Query 024134
Match_columns 272
No_of_seqs 397 out of 1167
Neff 12.0
Searched_HMMs 46136
Date Fri Mar 29 09:15:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024134.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024134hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02965 Probable pheophorbida 100.0 2.9E-40 6.3E-45 245.9 23.5 248 18-272 5-254 (255)
2 PLN02824 hydrolase, alpha/beta 100.0 1.2E-38 2.7E-43 242.2 20.8 248 15-271 28-294 (294)
3 PRK00870 haloalkane dehalogena 100.0 1.4E-38 3.1E-43 242.5 19.9 247 15-271 45-301 (302)
4 KOG4178 Soluble epoxide hydrol 100.0 8.1E-38 1.8E-42 226.6 20.6 254 13-272 41-321 (322)
5 PLN02211 methyl indole-3-aceta 100.0 2.7E-37 5.9E-42 230.8 23.1 260 5-270 7-269 (273)
6 TIGR02240 PHA_depoly_arom poly 100.0 5.1E-38 1.1E-42 236.6 18.9 242 15-271 24-266 (276)
7 PRK03592 haloalkane dehalogena 100.0 8.2E-38 1.8E-42 237.8 20.1 255 14-271 25-289 (295)
8 PRK03204 haloalkane dehalogena 100.0 3.7E-37 8.1E-42 232.2 21.5 248 14-268 32-285 (286)
9 PLN02679 hydrolase, alpha/beta 100.0 8.2E-37 1.8E-41 237.0 19.9 251 16-271 88-357 (360)
10 PRK10673 acyl-CoA esterase; Pr 100.0 2.5E-36 5.4E-41 225.4 21.0 235 14-270 14-254 (255)
11 TIGR03343 biphenyl_bphD 2-hydr 100.0 1.4E-36 3.1E-41 230.0 18.2 245 13-270 27-282 (282)
12 PRK10349 carboxylesterase BioH 100.0 3.3E-36 7.2E-41 224.6 18.6 235 14-270 10-255 (256)
13 PLN03087 BODYGUARD 1 domain co 100.0 6.5E-36 1.4E-40 234.9 19.9 252 16-270 201-478 (481)
14 TIGR03056 bchO_mg_che_rel puta 100.0 1.7E-35 3.8E-40 223.8 21.6 246 15-269 27-278 (278)
15 PLN03084 alpha/beta hydrolase 100.0 1.6E-35 3.5E-40 228.5 20.5 250 14-270 125-383 (383)
16 PLN02385 hydrolase; alpha/beta 100.0 1.5E-35 3.3E-40 229.7 18.8 241 15-271 86-345 (349)
17 PLN02578 hydrolase 100.0 1E-35 2.2E-40 230.8 17.6 249 14-269 84-353 (354)
18 TIGR03611 RutD pyrimidine util 100.0 3.3E-35 7.2E-40 219.7 19.6 242 14-270 11-257 (257)
19 KOG1454 Predicted hydrolase/ac 100.0 2.6E-35 5.6E-40 222.6 15.9 249 14-271 56-324 (326)
20 PRK11126 2-succinyl-6-hydroxy- 100.0 2.2E-34 4.8E-39 213.2 18.5 231 16-270 2-241 (242)
21 PRK06489 hypothetical protein; 100.0 3E-34 6.6E-39 223.2 19.8 249 16-271 69-357 (360)
22 TIGR02427 protocat_pcaD 3-oxoa 100.0 3.6E-34 7.9E-39 213.2 18.5 239 15-269 12-251 (251)
23 PHA02857 monoglyceride lipase; 100.0 5.4E-34 1.2E-38 215.0 19.2 239 14-271 23-273 (276)
24 PF12697 Abhydrolase_6: Alpha/ 100.0 1.3E-34 2.7E-39 212.6 14.2 226 19-263 1-228 (228)
25 TIGR01738 bioH putative pimelo 100.0 5.1E-34 1.1E-38 211.7 17.2 232 17-268 5-245 (245)
26 KOG4409 Predicted hydrolase/ac 100.0 1.2E-33 2.5E-38 205.6 17.4 250 14-271 88-364 (365)
27 PLN02298 hydrolase, alpha/beta 100.0 2.9E-33 6.3E-38 215.9 19.0 242 15-271 58-317 (330)
28 PRK10749 lysophospholipase L2; 100.0 2.9E-33 6.4E-38 215.1 18.3 248 14-271 52-329 (330)
29 TIGR03695 menH_SHCHC 2-succiny 100.0 2.1E-32 4.5E-37 203.6 20.6 238 16-269 1-251 (251)
30 TIGR01250 pro_imino_pep_2 prol 100.0 1.6E-32 3.4E-37 208.6 19.8 250 14-269 23-288 (288)
31 PRK07581 hypothetical protein; 100.0 1.4E-33 3E-38 218.4 14.1 252 16-271 41-336 (339)
32 PRK08775 homoserine O-acetyltr 100.0 5.6E-33 1.2E-37 214.8 16.8 242 16-271 57-339 (343)
33 PLN02894 hydrolase, alpha/beta 100.0 4.4E-32 9.5E-37 212.6 20.1 250 14-271 103-385 (402)
34 PRK14875 acetoin dehydrogenase 100.0 6.2E-31 1.3E-35 206.7 21.2 238 14-270 129-370 (371)
35 COG2267 PldB Lysophospholipase 100.0 7.5E-31 1.6E-35 196.6 19.2 244 17-271 35-294 (298)
36 TIGR01392 homoserO_Ac_trn homo 100.0 3.2E-32 6.9E-37 211.3 11.8 251 15-269 30-351 (351)
37 PRK00175 metX homoserine O-ace 100.0 2.8E-31 6E-36 207.4 16.3 252 16-271 48-374 (379)
38 PLN02652 hydrolase; alpha/beta 100.0 1.4E-30 3E-35 202.5 19.2 239 15-271 135-387 (395)
39 PLN02511 hydrolase 100.0 3.1E-30 6.8E-35 201.5 17.8 250 14-271 98-365 (388)
40 KOG1455 Lysophospholipase [Lip 100.0 6.2E-30 1.3E-34 182.9 16.0 240 16-270 54-311 (313)
41 PLN02980 2-oxoglutarate decarb 100.0 6.2E-30 1.3E-34 228.3 18.6 241 15-271 1370-1639(1655)
42 COG1647 Esterase/lipase [Gener 100.0 2.9E-29 6.4E-34 170.8 16.8 224 14-270 13-243 (243)
43 TIGR01249 pro_imino_pep_1 prol 100.0 6.9E-29 1.5E-33 189.3 18.0 105 15-121 26-131 (306)
44 KOG2382 Predicted alpha/beta h 100.0 9.4E-30 2E-34 185.0 12.0 244 14-271 50-313 (315)
45 TIGR01607 PST-A Plasmodium sub 100.0 1.6E-28 3.4E-33 188.3 17.2 244 9-270 14-332 (332)
46 PRK05855 short chain dehydroge 100.0 1.1E-28 2.3E-33 205.1 17.0 251 14-271 23-292 (582)
47 PRK10985 putative hydrolase; P 100.0 1.9E-27 4.2E-32 182.4 17.4 244 15-271 57-320 (324)
48 PRK05077 frsA fermentation/res 100.0 1.8E-26 4E-31 181.0 21.0 217 15-271 193-412 (414)
49 KOG2984 Predicted hydrolase [G 100.0 1.2E-28 2.6E-33 165.2 6.5 230 17-271 43-276 (277)
50 TIGR03100 hydr1_PEP hydrolase, 100.0 2E-26 4.3E-31 172.6 18.1 226 15-270 25-274 (274)
51 PRK06765 homoserine O-acetyltr 99.9 2E-27 4.4E-32 184.1 11.7 255 15-270 55-387 (389)
52 PRK13604 luxD acyl transferase 99.9 5.1E-26 1.1E-30 167.5 17.1 204 15-253 36-246 (307)
53 PRK11071 esterase YqiA; Provis 99.9 2.1E-25 4.5E-30 157.2 16.4 184 17-269 2-189 (190)
54 PF00561 Abhydrolase_1: alpha/ 99.9 1.4E-26 3.1E-31 170.2 9.4 214 44-265 1-229 (230)
55 TIGR01836 PHA_synth_III_C poly 99.9 5.8E-25 1.3E-29 170.6 16.3 248 15-270 61-349 (350)
56 TIGR01838 PHA_synth_I poly(R)- 99.9 1.3E-24 2.8E-29 173.0 18.0 234 15-258 187-462 (532)
57 PRK10566 esterase; Provisional 99.9 8.7E-25 1.9E-29 162.5 16.1 204 15-271 26-248 (249)
58 PLN02872 triacylglycerol lipas 99.9 2.3E-23 5E-28 161.6 17.3 255 15-271 73-389 (395)
59 PRK07868 acyl-CoA synthetase; 99.9 3.6E-23 7.8E-28 179.6 19.0 252 14-271 65-361 (994)
60 PF12695 Abhydrolase_5: Alpha/ 99.9 8.7E-23 1.9E-27 139.2 15.2 144 18-251 1-145 (145)
61 COG0596 MhpC Predicted hydrola 99.9 2.9E-22 6.3E-27 150.6 19.5 243 16-269 21-280 (282)
62 KOG2564 Predicted acetyltransf 99.9 5.1E-24 1.1E-28 150.3 7.7 105 14-119 72-181 (343)
63 KOG1552 Predicted alpha/beta h 99.9 5E-22 1.1E-26 139.8 14.6 189 16-270 60-251 (258)
64 COG3208 GrsT Predicted thioest 99.9 3.8E-22 8.2E-27 139.5 13.4 225 14-269 5-234 (244)
65 COG0429 Predicted hydrolase of 99.9 3.4E-22 7.3E-27 145.5 13.6 242 14-271 73-340 (345)
66 KOG4667 Predicted esterase [Li 99.9 2.3E-21 4.9E-26 131.8 15.4 210 14-256 31-244 (269)
67 PRK11460 putative hydrolase; P 99.9 4.8E-21 1E-25 139.7 15.2 173 14-267 14-208 (232)
68 TIGR03101 hydr2_PEP hydrolase, 99.9 2.6E-21 5.6E-26 142.1 12.2 105 16-121 25-135 (266)
69 PF06342 DUF1057: Alpha/beta h 99.9 3.9E-20 8.4E-25 132.1 17.1 235 17-269 36-297 (297)
70 KOG1838 Alpha/beta hydrolase [ 99.9 6.8E-20 1.5E-24 138.4 18.7 249 14-270 123-387 (409)
71 PLN02442 S-formylglutathione h 99.9 2.7E-19 5.8E-24 134.5 19.3 106 14-120 45-178 (283)
72 KOG4391 Predicted alpha/beta h 99.8 1.6E-20 3.4E-25 127.9 9.9 199 14-271 76-282 (300)
73 PF00326 Peptidase_S9: Prolyl 99.8 4.3E-20 9.3E-25 133.8 11.4 192 32-271 3-209 (213)
74 PLN00021 chlorophyllase 99.8 1.4E-18 3.1E-23 131.2 17.6 106 14-120 50-166 (313)
75 TIGR02821 fghA_ester_D S-formy 99.8 2.8E-18 6.2E-23 128.8 19.0 107 14-120 40-173 (275)
76 COG2021 MET2 Homoserine acetyl 99.8 6.7E-19 1.5E-23 130.6 14.3 253 15-270 50-367 (368)
77 PF02230 Abhydrolase_2: Phosph 99.8 9.8E-19 2.1E-23 126.6 14.4 178 14-271 12-215 (216)
78 COG1506 DAP2 Dipeptidyl aminop 99.8 3.6E-19 7.7E-24 147.2 12.6 206 17-271 395-616 (620)
79 TIGR01840 esterase_phb esteras 99.8 3E-18 6.5E-23 123.8 15.4 107 14-120 11-130 (212)
80 PF00975 Thioesterase: Thioest 99.8 6.4E-18 1.4E-22 124.1 15.4 221 17-268 1-229 (229)
81 PF01738 DLH: Dienelactone hyd 99.8 1.2E-17 2.7E-22 121.3 15.5 179 14-271 12-217 (218)
82 TIGR03230 lipo_lipase lipoprot 99.8 3E-18 6.5E-23 133.2 12.0 112 12-124 37-158 (442)
83 PF03096 Ndr: Ndr family; Int 99.8 1.6E-17 3.5E-22 120.3 13.1 241 14-271 21-279 (283)
84 KOG2931 Differentiation-relate 99.8 4.3E-16 9.4E-21 111.5 18.4 241 14-270 44-305 (326)
85 PF06821 Ser_hydrolase: Serine 99.8 3.3E-17 7.1E-22 112.7 12.4 156 19-257 1-159 (171)
86 PF10230 DUF2305: Uncharacteri 99.7 3.8E-16 8.3E-21 115.8 18.7 113 16-128 2-130 (266)
87 PF06500 DUF1100: Alpha/beta h 99.7 3.3E-17 7.1E-22 125.0 12.8 217 14-270 188-408 (411)
88 TIGR01849 PHB_depoly_PhaZ poly 99.7 1.4E-16 2.9E-21 122.7 16.3 246 16-271 102-406 (406)
89 TIGR01839 PHA_synth_II poly(R) 99.7 2E-16 4.3E-21 125.4 17.3 235 14-255 213-485 (560)
90 COG2945 Predicted hydrolase of 99.7 1.8E-16 3.9E-21 106.4 14.2 174 14-269 26-205 (210)
91 cd00707 Pancreat_lipase_like P 99.7 1.9E-17 4.2E-22 123.4 9.9 110 14-124 34-151 (275)
92 PRK10162 acetyl esterase; Prov 99.7 1.4E-15 3E-20 116.4 19.5 106 15-121 80-196 (318)
93 PF05448 AXE1: Acetyl xylan es 99.7 1.1E-15 2.4E-20 115.8 17.3 212 14-271 81-320 (320)
94 COG0400 Predicted esterase [Ge 99.7 7.4E-16 1.6E-20 108.4 14.2 171 14-271 16-205 (207)
95 PF08538 DUF1749: Protein of u 99.7 2E-16 4.3E-21 115.8 11.3 235 15-269 32-303 (303)
96 PF05728 UPF0227: Uncharacteri 99.7 5.7E-15 1.2E-19 102.7 16.1 181 19-268 2-186 (187)
97 COG4757 Predicted alpha/beta h 99.7 1.4E-15 3.1E-20 105.1 11.7 233 18-268 32-280 (281)
98 TIGR00976 /NonD putative hydro 99.7 5E-15 1.1E-19 121.6 17.1 105 14-120 20-132 (550)
99 COG0412 Dienelactone hydrolase 99.7 1E-14 2.2E-19 106.1 15.9 178 14-271 25-233 (236)
100 PRK10115 protease 2; Provision 99.6 9.1E-15 2E-19 122.1 16.2 193 14-252 443-654 (686)
101 PF12146 Hydrolase_4: Putative 99.6 5.1E-16 1.1E-20 92.1 5.0 72 8-79 7-79 (79)
102 KOG2565 Predicted hydrolases o 99.6 9E-15 1.9E-19 108.1 12.0 102 17-119 153-263 (469)
103 COG3571 Predicted hydrolase of 99.6 8.3E-14 1.8E-18 90.8 15.0 179 18-271 16-211 (213)
104 PRK10252 entF enterobactin syn 99.6 2.2E-14 4.8E-19 129.8 16.0 103 14-120 1066-1171(1296)
105 COG3319 Thioesterase domains o 99.6 4.1E-14 8.8E-19 102.7 14.0 101 17-121 1-104 (257)
106 TIGR03502 lipase_Pla1_cef extr 99.6 8.9E-15 1.9E-19 121.0 10.8 90 16-105 449-575 (792)
107 PF02273 Acyl_transf_2: Acyl t 99.6 5.4E-14 1.2E-18 98.3 11.7 216 6-257 20-242 (294)
108 PF09752 DUF2048: Uncharacteri 99.6 3.3E-13 7.2E-18 100.6 15.2 241 14-269 90-347 (348)
109 PF07859 Abhydrolase_3: alpha/ 99.6 2E-13 4.3E-18 99.0 13.9 94 19-120 1-110 (211)
110 COG3545 Predicted esterase of 99.5 5.2E-13 1.1E-17 88.9 13.8 173 16-270 2-178 (181)
111 COG3458 Acetyl esterase (deace 99.5 1.7E-13 3.6E-18 97.3 11.9 209 14-269 81-315 (321)
112 COG3243 PhaC Poly(3-hydroxyalk 99.5 1.5E-13 3.3E-18 103.8 12.5 231 15-256 106-375 (445)
113 PF12740 Chlorophyllase2: Chlo 99.5 7.3E-13 1.6E-17 95.6 14.3 106 14-120 15-131 (259)
114 PRK05371 x-prolyl-dipeptidyl a 99.5 7E-13 1.5E-17 111.7 16.2 218 35-271 271-519 (767)
115 KOG2624 Triglyceride lipase-ch 99.5 5.9E-13 1.3E-17 102.6 14.3 256 14-271 71-398 (403)
116 KOG2551 Phospholipase/carboxyh 99.5 2.9E-12 6.4E-17 88.6 14.9 173 15-269 4-218 (230)
117 PF03959 FSH1: Serine hydrolas 99.5 3.4E-13 7.4E-18 97.1 10.7 162 15-255 3-205 (212)
118 KOG3975 Uncharacterized conser 99.5 7E-12 1.5E-16 88.0 16.6 244 14-268 27-300 (301)
119 PF02129 Peptidase_S15: X-Pro 99.5 3.4E-12 7.3E-17 95.9 15.7 106 14-121 18-137 (272)
120 PF07819 PGAP1: PGAP1-like pro 99.5 9.6E-13 2.1E-17 95.1 11.5 103 15-121 3-124 (225)
121 PF06028 DUF915: Alpha/beta hy 99.5 2.1E-12 4.4E-17 94.3 12.7 204 14-268 9-252 (255)
122 KOG3043 Predicted hydrolase re 99.4 2.8E-12 6.1E-17 88.7 11.6 173 17-271 40-240 (242)
123 KOG1515 Arylacetamide deacetyl 99.4 7.5E-11 1.6E-15 89.3 19.5 223 14-271 88-335 (336)
124 KOG4627 Kynurenine formamidase 99.4 9.2E-13 2E-17 89.7 8.2 188 10-256 61-252 (270)
125 COG0657 Aes Esterase/lipase [L 99.4 3.7E-11 8.1E-16 92.3 17.8 105 15-123 78-194 (312)
126 PF07224 Chlorophyllase: Chlor 99.4 6.7E-12 1.5E-16 89.0 12.1 107 14-121 44-158 (307)
127 PF10503 Esterase_phd: Esteras 99.4 2E-11 4.4E-16 87.1 14.2 106 15-120 15-132 (220)
128 PF06057 VirJ: Bacterial virul 99.4 1.5E-11 3.3E-16 84.0 12.5 97 17-119 3-106 (192)
129 PTZ00472 serine carboxypeptida 99.4 8.5E-11 1.8E-15 94.0 17.7 108 14-122 75-218 (462)
130 PF03403 PAF-AH_p_II: Platelet 99.3 2.4E-11 5.1E-16 94.6 12.0 106 14-120 98-262 (379)
131 PF11339 DUF3141: Protein of u 99.3 3.1E-10 6.7E-15 88.4 17.8 81 34-121 92-176 (581)
132 KOG2112 Lysophospholipase [Lip 99.3 1.8E-11 3.8E-16 84.2 9.5 175 16-269 3-202 (206)
133 COG4188 Predicted dienelactone 99.3 1.3E-11 2.8E-16 92.6 7.1 94 15-108 70-182 (365)
134 PF01674 Lipase_2: Lipase (cla 99.3 2.3E-11 5E-16 86.6 7.7 88 17-106 2-96 (219)
135 PF00151 Lipase: Lipase; Inte 99.3 1.7E-11 3.7E-16 93.4 7.4 112 13-125 68-192 (331)
136 smart00824 PKS_TE Thioesterase 99.3 2.1E-10 4.6E-15 83.1 12.8 97 21-121 2-103 (212)
137 KOG2281 Dipeptidyl aminopeptid 99.2 2.4E-10 5.1E-15 90.9 11.7 207 14-271 640-867 (867)
138 PF08840 BAAT_C: BAAT / Acyl-C 99.2 1.1E-10 2.5E-15 83.9 9.3 49 71-120 6-56 (213)
139 PRK04940 hypothetical protein; 99.2 3.1E-09 6.6E-14 72.7 15.5 171 19-270 2-179 (180)
140 PLN02733 phosphatidylcholine-s 99.2 5.8E-11 1.3E-15 93.6 8.2 94 27-122 105-203 (440)
141 KOG2100 Dipeptidyl aminopeptid 99.2 7.6E-10 1.7E-14 93.4 14.0 201 15-269 525-745 (755)
142 PF12715 Abhydrolase_7: Abhydr 99.2 4.1E-11 8.9E-16 90.6 5.7 104 14-118 113-258 (390)
143 PF05990 DUF900: Alpha/beta hy 99.1 6.6E-10 1.4E-14 80.9 10.4 108 13-121 15-138 (233)
144 PF03583 LIP: Secretory lipase 99.1 3.2E-08 7E-13 74.7 16.9 45 210-254 218-267 (290)
145 KOG3847 Phospholipase A2 (plat 99.0 7.9E-09 1.7E-13 75.5 11.6 105 15-120 117-275 (399)
146 COG4814 Uncharacterized protei 99.0 1.4E-07 3E-12 67.1 15.8 104 18-121 47-177 (288)
147 KOG4840 Predicted hydrolases o 99.0 4E-08 8.7E-13 68.3 12.5 102 16-121 36-145 (299)
148 PF00450 Peptidase_S10: Serine 99.0 6.7E-08 1.5E-12 77.6 15.8 107 14-121 38-182 (415)
149 COG4099 Predicted peptidase [G 98.9 2.2E-08 4.9E-13 72.7 10.7 37 83-119 267-303 (387)
150 KOG1553 Predicted alpha/beta h 98.9 9.1E-09 2E-13 76.2 8.1 99 16-119 243-344 (517)
151 KOG3253 Predicted alpha/beta h 98.9 3.8E-08 8.1E-13 78.2 11.8 176 15-270 175-373 (784)
152 PLN02606 palmitoyl-protein thi 98.9 3.6E-07 7.8E-12 67.7 15.3 102 15-120 25-132 (306)
153 PF05705 DUF829: Eukaryotic pr 98.9 2.8E-07 6E-12 68.2 15.0 58 211-268 178-240 (240)
154 PF05057 DUF676: Putative seri 98.8 2.3E-08 5.1E-13 72.3 8.7 88 15-104 3-97 (217)
155 COG1075 LipA Predicted acetylt 98.8 1.4E-08 3E-13 78.3 7.6 102 16-121 59-165 (336)
156 PF04301 DUF452: Protein of un 98.8 2.5E-07 5.4E-12 65.4 12.4 81 14-120 9-90 (213)
157 COG3150 Predicted esterase [Ge 98.7 2.9E-07 6.2E-12 61.2 10.0 89 19-121 2-92 (191)
158 KOG1551 Uncharacterized conser 98.7 9.1E-07 2E-11 63.4 13.2 233 19-271 116-366 (371)
159 PF12048 DUF3530: Protein of u 98.7 3.1E-06 6.7E-11 64.5 17.2 108 14-121 85-230 (310)
160 PF10340 DUF2424: Protein of u 98.7 2E-06 4.4E-11 66.0 16.0 106 15-123 121-238 (374)
161 PRK10439 enterobactin/ferric e 98.7 1.1E-06 2.4E-11 69.6 15.1 105 15-119 208-322 (411)
162 PLN02633 palmitoyl protein thi 98.7 7.9E-07 1.7E-11 66.0 12.7 103 14-120 23-131 (314)
163 COG4782 Uncharacterized protei 98.7 1.8E-07 3.9E-12 70.2 8.8 106 14-119 114-233 (377)
164 PF05677 DUF818: Chlamydia CHL 98.7 2.8E-07 6E-12 68.8 9.3 90 14-107 135-237 (365)
165 COG3509 LpqC Poly(3-hydroxybut 98.6 4.1E-07 8.8E-12 66.5 9.8 105 15-120 60-179 (312)
166 COG2936 Predicted acyl esteras 98.6 1.2E-06 2.6E-11 70.5 13.3 108 14-121 43-160 (563)
167 PF08386 Abhydrolase_4: TAP-li 98.6 2.9E-07 6.2E-12 58.0 6.9 60 211-270 34-93 (103)
168 COG1073 Hydrolases of the alph 98.6 7.9E-07 1.7E-11 67.9 10.8 60 212-271 233-297 (299)
169 PF05577 Peptidase_S28: Serine 98.6 6.2E-07 1.3E-11 72.3 10.4 107 15-121 28-149 (434)
170 PF00756 Esterase: Putative es 98.6 2E-07 4.2E-12 69.6 6.9 107 14-120 22-150 (251)
171 PF02450 LCAT: Lecithin:choles 98.6 4.6E-07 9.9E-12 71.5 8.7 84 31-123 66-163 (389)
172 COG1770 PtrB Protease II [Amin 98.5 3E-06 6.6E-11 68.7 12.6 109 13-121 445-563 (682)
173 KOG3724 Negative regulator of 98.5 5.1E-07 1.1E-11 74.2 8.4 101 14-119 87-219 (973)
174 PLN02209 serine carboxypeptida 98.5 1.9E-05 4.2E-10 63.1 16.4 59 211-270 351-434 (437)
175 KOG3101 Esterase D [General fu 98.5 1.3E-06 2.9E-11 60.5 8.5 108 16-123 44-179 (283)
176 PLN03016 sinapoylglucose-malat 98.5 2E-05 4.3E-10 62.9 15.5 59 211-270 347-430 (433)
177 COG3946 VirJ Type IV secretory 98.4 3.4E-06 7.4E-11 64.3 10.3 86 17-108 261-349 (456)
178 PF02089 Palm_thioest: Palmito 98.4 1.2E-06 2.6E-11 64.4 6.7 105 15-120 4-116 (279)
179 KOG2541 Palmitoyl protein thio 98.3 3E-05 6.5E-10 56.1 12.6 99 15-119 22-127 (296)
180 cd00312 Esterase_lipase Estera 98.3 2.5E-06 5.3E-11 70.2 7.6 106 14-121 93-214 (493)
181 KOG2237 Predicted serine prote 98.3 6E-06 1.3E-10 66.7 8.9 109 13-121 467-585 (712)
182 PF10142 PhoPQ_related: PhoPQ- 98.3 1.8E-05 3.9E-10 61.2 11.3 149 83-271 170-320 (367)
183 COG2272 PnbA Carboxylesterase 98.2 3.2E-06 7E-11 66.5 6.5 107 14-121 92-218 (491)
184 COG4553 DepA Poly-beta-hydroxy 98.2 0.0004 8.6E-09 51.1 15.4 103 16-122 103-211 (415)
185 PLN02213 sinapoylglucose-malat 98.1 0.00045 9.8E-09 53.3 15.6 59 211-270 233-316 (319)
186 PF11144 DUF2920: Protein of u 98.1 0.00078 1.7E-08 52.5 16.0 36 85-120 184-219 (403)
187 PF07082 DUF1350: Protein of u 98.1 0.00077 1.7E-08 48.8 14.9 91 18-118 19-123 (250)
188 KOG3967 Uncharacterized conser 98.1 0.0001 2.2E-09 51.5 10.0 104 15-119 100-226 (297)
189 COG0627 Predicted esterase [Ge 98.0 2.9E-05 6.4E-10 59.0 7.4 109 15-123 53-190 (316)
190 PF00135 COesterase: Carboxyle 98.0 3E-05 6.4E-10 64.6 8.1 106 15-120 124-245 (535)
191 KOG1282 Serine carboxypeptidas 97.9 0.00068 1.5E-08 54.2 14.2 59 212-270 364-447 (454)
192 KOG2183 Prolylcarboxypeptidase 97.9 6.2E-05 1.4E-09 57.9 7.7 103 17-119 81-201 (492)
193 PLN02517 phosphatidylcholine-s 97.8 4.6E-05 9.9E-10 61.8 6.1 90 31-122 157-265 (642)
194 KOG2521 Uncharacterized conser 97.8 0.0021 4.5E-08 49.5 13.6 237 13-271 35-290 (350)
195 cd00741 Lipase Lipase. Lipase 97.8 6.3E-05 1.4E-09 51.4 5.1 51 70-120 10-67 (153)
196 KOG1202 Animal-type fatty acid 97.8 0.0014 3E-08 57.6 13.7 96 14-119 2121-2218(2376)
197 PF06259 Abhydrolase_8: Alpha/ 97.7 0.0011 2.3E-08 46.0 10.7 106 15-120 18-144 (177)
198 COG1505 Serine proteases of th 97.7 0.00027 5.8E-09 57.2 8.6 105 15-119 420-534 (648)
199 KOG2182 Hydrolytic enzymes of 97.6 0.00061 1.3E-08 54.0 9.2 107 14-120 84-207 (514)
200 PF01764 Lipase_3: Lipase (cla 97.5 0.00021 4.5E-09 48.0 4.7 37 69-106 49-85 (140)
201 KOG2369 Lecithin:cholesterol a 97.5 0.00025 5.4E-09 55.8 5.6 84 30-119 124-224 (473)
202 PF11187 DUF2974: Protein of u 97.4 0.00062 1.3E-08 49.4 6.0 36 85-120 84-123 (224)
203 COG2819 Predicted hydrolase of 97.3 0.0004 8.7E-09 50.8 4.5 38 83-120 135-172 (264)
204 PF11288 DUF3089: Protein of u 97.3 0.00055 1.2E-08 48.5 4.7 63 44-106 46-116 (207)
205 PF01083 Cutinase: Cutinase; 97.2 0.0016 3.5E-08 45.7 6.5 101 18-121 7-123 (179)
206 cd00519 Lipase_3 Lipase (class 97.2 0.00063 1.4E-08 50.0 4.7 24 83-106 126-149 (229)
207 COG2830 Uncharacterized protei 97.0 0.021 4.6E-07 38.3 9.5 79 16-120 11-90 (214)
208 KOG1516 Carboxylesterase and r 96.9 0.0035 7.5E-08 52.6 7.2 105 16-120 112-232 (545)
209 PLN02162 triacylglycerol lipas 96.9 0.0022 4.7E-08 51.0 5.4 34 70-104 264-297 (475)
210 COG2939 Carboxypeptidase C (ca 96.9 0.0057 1.2E-07 49.0 7.4 109 15-124 100-240 (498)
211 COG2382 Fes Enterochelin ester 96.9 0.0038 8.3E-08 46.6 6.0 53 68-120 156-212 (299)
212 PLN00413 triacylglycerol lipas 96.8 0.0029 6.3E-08 50.4 5.5 35 69-104 269-303 (479)
213 PF05277 DUF726: Protein of un 96.8 0.003 6.4E-08 48.8 5.1 40 83-122 218-262 (345)
214 PLN02571 triacylglycerol lipas 96.6 0.0029 6.3E-08 49.8 4.2 37 68-105 208-246 (413)
215 PLN02454 triacylglycerol lipas 96.6 0.003 6.5E-08 49.7 4.2 20 86-105 229-248 (414)
216 PLN02408 phospholipase A1 96.4 0.0048 1E-07 47.9 4.1 35 71-106 185-221 (365)
217 KOG4372 Predicted alpha/beta h 96.4 0.0082 1.8E-07 46.7 5.0 87 15-103 79-168 (405)
218 PLN02934 triacylglycerol lipas 96.3 0.0062 1.3E-07 49.1 4.3 35 69-104 306-340 (515)
219 PLN02310 triacylglycerol lipas 96.1 0.015 3.2E-07 45.9 5.4 36 70-105 191-229 (405)
220 PF07519 Tannase: Tannase and 96.1 0.042 9E-07 45.0 8.1 84 35-120 52-150 (474)
221 PF06850 PHB_depo_C: PHB de-po 96.1 0.015 3.3E-07 40.6 4.7 61 211-271 134-202 (202)
222 PLN02324 triacylglycerol lipas 96.0 0.0089 1.9E-07 47.1 4.0 35 71-105 200-235 (415)
223 COG4287 PqaA PhoPQ-activated p 95.8 0.024 5.2E-07 43.6 5.2 58 211-271 329-387 (507)
224 PLN02802 triacylglycerol lipas 95.8 0.013 2.8E-07 47.3 3.9 37 70-106 314-351 (509)
225 PLN03037 lipase class 3 family 95.8 0.013 2.7E-07 47.5 3.9 36 70-105 300-338 (525)
226 PF04083 Abhydro_lipase: Parti 95.7 0.0098 2.1E-07 33.4 2.1 19 14-32 41-59 (63)
227 PLN02753 triacylglycerol lipas 95.6 0.016 3.5E-07 47.0 3.9 35 71-105 294-332 (531)
228 PF09949 DUF2183: Uncharacteri 95.6 0.29 6.3E-06 30.6 9.1 84 31-115 12-97 (100)
229 PF05576 Peptidase_S37: PS-10 95.5 0.022 4.7E-07 44.7 4.0 103 14-119 61-168 (448)
230 PLN02719 triacylglycerol lipas 95.5 0.019 4.1E-07 46.4 3.8 21 85-105 298-318 (518)
231 COG4947 Uncharacterized protei 95.2 0.087 1.9E-06 36.0 5.7 104 15-120 25-136 (227)
232 PLN02761 lipase class 3 family 95.2 0.027 5.9E-07 45.7 3.9 20 85-104 294-313 (527)
233 PLN02847 triacylglycerol lipas 95.0 0.038 8.2E-07 45.6 4.2 23 83-105 249-271 (633)
234 KOG4569 Predicted lipase [Lipi 94.8 0.041 8.9E-07 42.9 3.9 37 68-105 155-191 (336)
235 PF08237 PE-PPE: PE-PPE domain 94.7 0.17 3.7E-06 37.0 6.6 64 43-106 2-69 (225)
236 KOG2029 Uncharacterized conser 94.5 0.077 1.7E-06 43.7 4.8 38 82-119 523-571 (697)
237 KOG1283 Serine carboxypeptidas 92.5 0.47 1E-05 36.2 5.7 107 14-122 29-168 (414)
238 PRK12467 peptide synthase; Pro 92.5 1.1 2.4E-05 47.2 9.9 99 17-119 3693-3794(3956)
239 KOG4540 Putative lipase essent 92.4 0.26 5.6E-06 36.8 4.2 32 76-107 267-298 (425)
240 COG5153 CVT17 Putative lipase 92.4 0.26 5.6E-06 36.8 4.2 32 76-107 267-298 (425)
241 COG1448 TyrB Aspartate/tyrosin 92.3 1.9 4E-05 34.0 8.8 86 16-118 171-263 (396)
242 KOG4388 Hormone-sensitive lipa 92.3 1.9 4.2E-05 36.0 9.2 97 16-119 396-507 (880)
243 KOG2385 Uncharacterized conser 91.8 0.27 5.8E-06 39.9 4.0 43 82-124 444-491 (633)
244 cd01714 ETF_beta The electron 89.5 2.6 5.6E-05 30.4 7.1 71 36-116 69-145 (202)
245 PF06309 Torsin: Torsin; Inte 88.6 3.7 8.1E-05 26.9 6.5 62 14-81 50-116 (127)
246 COG3340 PepE Peptidase E [Amin 88.5 1.2 2.6E-05 31.9 4.6 39 14-52 30-71 (224)
247 PF06792 UPF0261: Uncharacteri 88.4 9.7 0.00021 30.6 9.8 98 17-115 2-125 (403)
248 COG0529 CysC Adenylylsulfate k 88.1 7.3 0.00016 27.4 8.1 37 14-50 20-58 (197)
249 PF07519 Tannase: Tannase and 85.8 1.7 3.7E-05 35.9 4.8 60 211-270 353-426 (474)
250 PF01583 APS_kinase: Adenylyls 84.6 8.8 0.00019 26.4 7.0 36 16-51 1-38 (156)
251 PRK02399 hypothetical protein; 84.4 20 0.00043 29.0 10.2 98 17-115 4-127 (406)
252 cd03818 GT1_ExpC_like This fam 83.5 10 0.00022 30.6 8.3 38 19-58 2-39 (396)
253 COG2939 Carboxypeptidase C (ca 82.8 1.3 2.8E-05 36.2 2.8 59 211-270 425-490 (498)
254 PRK05282 (alpha)-aspartyl dipe 82.1 6.8 0.00015 29.0 6.1 88 15-103 30-130 (233)
255 PF00326 Peptidase_S9: Prolyl 81.0 6.9 0.00015 28.3 6.0 64 15-81 143-209 (213)
256 cd07225 Pat_PNPLA6_PNPLA7 Pata 81.0 2.6 5.7E-05 32.6 3.9 33 73-106 32-64 (306)
257 cd07198 Patatin Patatin-like p 80.4 3 6.6E-05 29.1 3.8 33 74-107 16-48 (172)
258 TIGR03709 PPK2_rel_1 polyphosp 80.2 11 0.00024 28.5 6.7 71 14-96 53-125 (264)
259 PF09994 DUF2235: Uncharacteri 79.9 22 0.00049 27.1 8.5 89 17-105 2-112 (277)
260 cd07207 Pat_ExoU_VipD_like Exo 79.7 3.1 6.8E-05 29.6 3.8 32 74-106 17-48 (194)
261 PF00448 SRP54: SRP54-type pro 78.7 22 0.00047 25.6 8.0 73 34-116 74-148 (196)
262 PF00698 Acyl_transf_1: Acyl t 78.4 1.7 3.6E-05 33.9 2.2 30 74-104 74-103 (318)
263 PRK10279 hypothetical protein; 78.3 3.3 7.2E-05 31.9 3.7 33 74-107 23-55 (300)
264 COG0426 FpaA Uncharacterized f 77.8 30 0.00064 27.9 8.6 90 2-110 232-332 (388)
265 cd07227 Pat_Fungal_NTE1 Fungal 77.6 3.9 8.6E-05 31.0 3.8 32 74-106 28-59 (269)
266 smart00827 PKS_AT Acyl transfe 77.5 3.2 6.9E-05 31.9 3.5 30 75-105 73-102 (298)
267 TIGR03707 PPK2_P_aer polyphosp 77.4 17 0.00037 26.9 6.9 71 14-97 28-101 (230)
268 TIGR00521 coaBC_dfp phosphopan 77.3 23 0.00049 28.7 8.1 73 17-92 113-193 (390)
269 cd07210 Pat_hypo_W_succinogene 76.5 4.9 0.00011 29.4 4.0 31 76-107 20-50 (221)
270 TIGR03131 malonate_mdcH malona 75.9 3.7 8.1E-05 31.6 3.5 30 75-105 67-96 (295)
271 PRK05579 bifunctional phosphop 75.9 32 0.0007 28.0 8.6 71 16-92 116-196 (399)
272 cd07228 Pat_NTE_like_bacteria 75.1 5.1 0.00011 28.0 3.7 31 76-107 20-50 (175)
273 TIGR03712 acc_sec_asp2 accesso 75.0 48 0.001 27.6 14.0 97 15-118 288-388 (511)
274 PF10081 Abhydrolase_9: Alpha/ 74.2 6.3 0.00014 29.9 4.0 54 68-121 90-148 (289)
275 cd03146 GAT1_Peptidase_E Type 74.0 20 0.00044 26.1 6.6 85 14-101 29-129 (212)
276 COG3673 Uncharacterized conser 73.7 37 0.0008 26.6 7.8 91 15-105 30-142 (423)
277 COG1752 RssA Predicted esteras 73.7 5.1 0.00011 31.1 3.7 33 74-107 29-61 (306)
278 cd07209 Pat_hypo_Ecoli_Z1214_l 73.7 5.7 0.00012 28.9 3.8 33 74-107 16-48 (215)
279 TIGR00128 fabD malonyl CoA-acy 71.5 5.1 0.00011 30.7 3.3 30 76-106 74-104 (290)
280 TIGR02069 cyanophycinase cyano 71.0 19 0.0004 27.1 5.9 39 14-52 26-66 (250)
281 PF13207 AAA_17: AAA domain; P 70.8 14 0.00031 23.7 4.9 37 19-57 1-40 (121)
282 cd07205 Pat_PNPLA6_PNPLA7_NTE1 70.8 8.4 0.00018 26.9 4.0 31 75-106 19-49 (175)
283 PF02230 Abhydrolase_2: Phosph 70.3 19 0.00042 26.1 5.9 57 16-80 155-214 (216)
284 cd07230 Pat_TGL4-5_like Triacy 70.0 3.3 7.2E-05 33.7 2.0 37 75-112 92-128 (421)
285 PF03610 EIIA-man: PTS system 69.9 26 0.00057 22.5 8.3 74 18-103 2-76 (116)
286 cd05312 NAD_bind_1_malic_enz N 69.7 22 0.00049 27.1 6.1 82 18-103 26-124 (279)
287 COG1506 DAP2 Dipeptidyl aminop 69.4 22 0.00047 30.9 6.8 64 14-80 549-615 (620)
288 COG3933 Transcriptional antite 68.8 36 0.00079 27.9 7.2 73 17-102 110-182 (470)
289 PF14253 AbiH: Bacteriophage a 68.3 5.7 0.00012 30.1 2.9 22 76-97 226-247 (270)
290 COG3727 Vsr DNA G:T-mismatch r 68.2 16 0.00035 24.1 4.3 15 35-49 100-114 (150)
291 PF08433 KTI12: Chromatin asso 67.7 24 0.00051 26.9 6.0 38 18-55 2-41 (270)
292 PRK07667 uridine kinase; Provi 67.1 30 0.00066 24.7 6.2 53 2-54 2-56 (193)
293 cd07232 Pat_PLPL Patain-like p 67.0 4.2 9.1E-05 32.9 2.0 38 75-113 86-123 (407)
294 COG1073 Hydrolases of the alph 66.7 0.37 8.1E-06 36.6 -3.8 91 14-107 47-154 (299)
295 cd07208 Pat_hypo_Ecoli_yjju_li 66.4 10 0.00022 28.7 3.9 33 76-109 18-51 (266)
296 PF05576 Peptidase_S37: PS-10 66.3 10 0.00022 30.6 3.8 55 211-267 351-410 (448)
297 COG0279 GmhA Phosphoheptose is 65.9 13 0.00029 25.6 3.9 73 20-97 44-121 (176)
298 PRK00726 murG undecaprenyldiph 65.8 42 0.00091 26.6 7.4 34 20-53 6-39 (357)
299 COG2240 PdxK Pyridoxal/pyridox 65.0 19 0.0004 27.5 4.8 85 36-124 21-117 (281)
300 PRK14974 cell division protein 64.9 68 0.0015 25.5 8.1 66 41-116 220-287 (336)
301 PF03976 PPK2: Polyphosphate k 64.8 6.2 0.00013 29.1 2.3 71 14-97 28-101 (228)
302 COG0218 Predicted GTPase [Gene 64.2 11 0.00025 26.9 3.4 56 211-270 135-198 (200)
303 PF10605 3HBOH: 3HB-oligomer h 63.6 5 0.00011 33.9 1.8 35 87-121 287-322 (690)
304 cd07231 Pat_SDP1-like Sugar-De 62.8 5.9 0.00013 30.7 2.0 33 76-109 88-120 (323)
305 PRK14729 miaA tRNA delta(2)-is 62.2 66 0.0014 25.0 7.4 75 17-93 4-101 (300)
306 cd07212 Pat_PNPLA9 Patatin-lik 61.8 16 0.00036 28.4 4.3 21 87-107 34-54 (312)
307 PF01012 ETF: Electron transfe 61.5 51 0.0011 22.7 8.1 81 14-106 31-113 (164)
308 cd07229 Pat_TGL3_like Triacylg 61.4 6.7 0.00015 31.5 2.2 37 76-113 103-139 (391)
309 PF07302 AroM: AroM protein; 61.3 41 0.00088 24.7 5.8 51 6-56 141-191 (221)
310 cd04951 GT1_WbdM_like This fam 61.0 78 0.0017 24.7 8.8 35 19-53 3-39 (360)
311 PF11713 Peptidase_C80: Peptid 60.7 6.9 0.00015 26.9 1.9 51 47-97 57-116 (157)
312 cd03785 GT1_MurG MurG is an N- 60.7 66 0.0014 25.3 7.7 32 20-51 2-35 (350)
313 COG0541 Ffh Signal recognition 60.3 71 0.0015 26.3 7.4 48 68-116 198-247 (451)
314 PF03205 MobB: Molybdopterin g 60.2 30 0.00065 23.2 4.8 41 18-58 1-43 (140)
315 PRK06731 flhF flagellar biosyn 59.7 77 0.0017 24.2 8.3 73 34-116 144-219 (270)
316 PRK13982 bifunctional SbtC-lik 59.6 1.1E+02 0.0023 25.8 9.5 99 16-119 180-305 (475)
317 TIGR01425 SRP54_euk signal rec 59.6 1E+02 0.0022 25.5 8.5 70 37-116 176-247 (429)
318 PRK07313 phosphopantothenoylcy 59.6 34 0.00073 24.3 5.2 60 15-79 112-179 (182)
319 KOG1200 Mitochondrial/plastidi 59.5 65 0.0014 23.3 6.4 33 18-52 15-47 (256)
320 PF03283 PAE: Pectinacetyleste 59.5 27 0.0006 27.9 5.2 39 81-119 152-194 (361)
321 TIGR02816 pfaB_fam PfaB family 59.5 12 0.00025 31.7 3.3 31 75-106 255-286 (538)
322 PF08484 Methyltransf_14: C-me 59.4 25 0.00054 24.3 4.4 52 67-118 50-102 (160)
323 PHA02114 hypothetical protein 59.0 18 0.00039 22.3 3.1 33 17-49 83-115 (127)
324 PF05724 TPMT: Thiopurine S-me 58.8 32 0.00068 25.3 5.1 31 16-51 37-67 (218)
325 PRK08762 molybdopterin biosynt 58.6 94 0.002 25.1 8.1 37 79-119 131-168 (376)
326 PRK00091 miaA tRNA delta(2)-is 56.8 61 0.0013 25.3 6.5 73 16-90 3-99 (307)
327 cd00006 PTS_IIA_man PTS_IIA, P 56.7 52 0.0011 21.4 7.7 71 18-100 3-73 (122)
328 cd07224 Pat_like Patatin-like 56.4 20 0.00043 26.6 3.8 31 76-107 19-51 (233)
329 COG2326 Uncharacterized conser 55.6 72 0.0016 24.1 6.3 76 6-94 63-141 (270)
330 PF04084 ORC2: Origin recognit 55.0 1E+02 0.0023 24.3 9.4 78 19-98 56-150 (326)
331 PF13439 Glyco_transf_4: Glyco 54.7 46 0.001 22.6 5.4 31 24-54 10-40 (177)
332 PF01656 CbiA: CobQ/CobB/MinD/ 54.3 29 0.00063 24.5 4.3 34 19-52 1-36 (195)
333 cd07206 Pat_TGL3-4-5_SDP1 Tria 53.3 19 0.00041 27.9 3.3 28 83-110 95-122 (298)
334 PF03853 YjeF_N: YjeF-related 52.7 45 0.00097 23.3 4.9 36 14-49 23-58 (169)
335 KOG1209 1-Acyl dihydroxyaceton 52.3 37 0.0008 24.9 4.3 38 14-52 4-41 (289)
336 TIGR03708 poly_P_AMP_trns poly 52.2 1E+02 0.0022 26.0 7.4 72 14-98 37-111 (493)
337 PF09419 PGP_phosphatase: Mito 52.0 77 0.0017 22.2 5.8 53 39-95 36-88 (168)
338 PRK13256 thiopurine S-methyltr 51.8 21 0.00046 26.3 3.3 30 18-52 45-74 (226)
339 COG3887 Predicted signaling pr 51.3 37 0.0008 29.0 4.8 101 15-119 257-377 (655)
340 PF14606 Lipase_GDSL_3: GDSL-l 50.7 70 0.0015 22.7 5.4 13 43-55 33-45 (178)
341 COG4850 Uncharacterized conser 50.3 87 0.0019 24.6 6.2 99 17-119 214-314 (373)
342 PF04244 DPRP: Deoxyribodipyri 49.9 66 0.0014 23.8 5.5 48 32-90 51-98 (224)
343 TIGR01361 DAHP_synth_Bsub phos 49.3 1.2E+02 0.0025 23.1 8.3 73 14-95 130-206 (260)
344 COG1092 Predicted SAM-dependen 48.8 70 0.0015 26.0 5.9 59 35-96 280-340 (393)
345 cd03145 GAT1_cyanophycinase Ty 48.4 1.1E+02 0.0023 22.5 6.5 87 15-102 28-133 (217)
346 cd07218 Pat_iPLA2 Calcium-inde 48.3 31 0.00068 25.8 3.8 22 86-107 31-52 (245)
347 TIGR02363 dhaK1 dihydroxyaceto 48.0 97 0.0021 24.5 6.3 36 14-49 251-291 (329)
348 PLN02748 tRNA dimethylallyltra 47.9 1.1E+02 0.0025 25.6 7.0 77 15-93 20-120 (468)
349 PRK14481 dihydroxyacetone kina 47.8 98 0.0021 24.5 6.3 36 14-49 250-290 (331)
350 cd07204 Pat_PNPLA_like Patatin 47.7 34 0.00074 25.6 3.9 21 87-107 33-53 (243)
351 PRK11613 folP dihydropteroate 47.4 1.3E+02 0.0028 23.2 7.6 58 33-99 166-225 (282)
352 cd01819 Patatin_and_cPLA2 Pata 47.3 35 0.00075 23.4 3.6 19 85-103 28-46 (155)
353 PF12242 Eno-Rase_NADH_b: NAD( 47.0 26 0.00057 20.6 2.5 24 83-106 38-61 (78)
354 cd07221 Pat_PNPLA3 Patatin-lik 46.9 35 0.00076 25.7 3.8 22 86-107 33-54 (252)
355 PF13478 XdhC_C: XdhC Rossmann 46.8 43 0.00092 22.4 3.9 30 21-53 2-31 (136)
356 PF09370 TIM-br_sig_trns: TIM- 46.8 54 0.0012 24.8 4.6 63 34-99 161-225 (268)
357 PRK11460 putative hydrolase; P 46.6 1.1E+02 0.0025 22.5 6.5 42 15-56 147-191 (232)
358 PRK00889 adenylylsulfate kinas 46.5 65 0.0014 22.4 5.0 36 16-51 3-40 (175)
359 PRK06849 hypothetical protein; 46.4 93 0.002 25.2 6.5 73 16-93 4-85 (389)
360 PTZ00317 NADP-dependent malic 46.2 55 0.0012 27.9 5.1 82 18-102 298-399 (559)
361 PF14488 DUF4434: Domain of un 46.2 77 0.0017 22.1 5.2 55 27-81 17-77 (166)
362 COG4822 CbiK Cobalamin biosynt 46.2 1.2E+02 0.0025 22.3 8.1 60 16-90 138-199 (265)
363 PLN02840 tRNA dimethylallyltra 46.2 1.4E+02 0.003 24.7 7.1 77 15-93 19-119 (421)
364 cd07220 Pat_PNPLA2 Patatin-lik 45.5 36 0.00079 25.6 3.7 22 86-107 37-58 (249)
365 TIGR03586 PseI pseudaminic aci 45.4 1.5E+02 0.0033 23.5 10.6 93 15-117 133-226 (327)
366 COG4667 Predicted esterase of 45.3 24 0.00052 26.6 2.7 40 73-114 29-69 (292)
367 PRK13398 3-deoxy-7-phosphohept 45.0 1.4E+02 0.003 22.8 8.6 76 14-95 132-208 (266)
368 PRK04148 hypothetical protein; 45.0 45 0.00098 22.3 3.7 32 83-118 16-47 (134)
369 COG3946 VirJ Type IV secretory 44.8 1.3E+02 0.0027 24.7 6.5 99 18-116 50-153 (456)
370 COG4551 Predicted protein tyro 44.4 66 0.0014 19.7 3.9 27 42-80 74-100 (109)
371 COG1763 MobB Molybdopterin-gua 44.4 69 0.0015 22.3 4.6 39 17-55 2-42 (161)
372 KOG2170 ATPase of the AAA+ sup 44.2 41 0.0009 26.1 3.8 19 14-32 107-125 (344)
373 PF00004 AAA: ATPase family as 44.0 85 0.0019 20.2 5.1 31 20-53 1-33 (132)
374 PRK11468 dihydroxyacetone kina 43.9 90 0.0019 24.9 5.6 35 15-49 275-314 (356)
375 cd01983 Fer4_NifH The Fer4_Nif 43.8 57 0.0012 19.4 4.0 31 20-50 2-34 (99)
376 PRK08220 2,3-dihydroxybenzoate 43.8 1.3E+02 0.0028 22.2 6.6 32 20-53 11-42 (252)
377 KOG2872 Uroporphyrinogen decar 43.6 65 0.0014 24.8 4.6 29 17-52 253-281 (359)
378 COG0331 FabD (acyl-carrier-pro 43.6 29 0.00063 27.1 3.0 22 83-104 83-104 (310)
379 PRK06696 uridine kinase; Valid 43.1 79 0.0017 23.2 5.2 41 14-54 19-61 (223)
380 TIGR03708 poly_P_AMP_trns poly 43.1 1.1E+02 0.0024 25.8 6.4 71 14-97 296-369 (493)
381 PF05577 Peptidase_S28: Serine 42.8 24 0.00052 29.0 2.7 42 211-255 376-417 (434)
382 PRK07933 thymidylate kinase; V 42.8 85 0.0018 22.9 5.2 39 19-57 2-42 (213)
383 TIGR00959 ffh signal recogniti 42.8 2E+02 0.0043 23.9 7.9 68 39-116 178-247 (428)
384 PF03358 FMN_red: NADPH-depend 42.4 44 0.00095 22.5 3.6 37 18-54 2-42 (152)
385 COG5441 Uncharacterized conser 41.8 1.7E+02 0.0036 22.9 7.8 97 18-114 3-122 (401)
386 PTZ00445 p36-lilke protein; Pr 41.7 1.2E+02 0.0026 22.3 5.6 66 30-95 29-102 (219)
387 KOG1411 Aspartate aminotransfe 41.3 71 0.0015 25.4 4.6 85 17-117 198-289 (427)
388 PF06792 UPF0261: Uncharacteri 41.1 78 0.0017 25.8 5.0 43 15-57 183-225 (403)
389 cd00401 AdoHcyase S-adenosyl-L 40.8 1.6E+02 0.0034 24.3 6.8 66 33-114 75-140 (413)
390 PF01734 Patatin: Patatin-like 40.8 34 0.00073 23.9 3.0 23 83-105 25-47 (204)
391 PF02590 SPOUT_MTase: Predicte 40.7 68 0.0015 22.1 4.2 44 42-95 66-109 (155)
392 KOG0781 Signal recognition par 40.6 1.7E+02 0.0036 24.8 6.7 75 20-104 442-517 (587)
393 PF00091 Tubulin: Tubulin/FtsZ 40.5 79 0.0017 23.1 4.8 15 83-97 122-136 (216)
394 TIGR00174 miaA tRNA isopenteny 40.3 1E+02 0.0022 23.8 5.5 73 19-93 1-97 (287)
395 COG1576 Uncharacterized conser 39.8 99 0.0021 21.3 4.7 56 35-102 60-115 (155)
396 PF03033 Glyco_transf_28: Glyc 39.7 37 0.00081 22.3 2.9 33 20-52 3-35 (139)
397 TIGR02362 dhaK1b probable dihy 39.6 1.1E+02 0.0023 24.2 5.4 36 14-49 247-287 (326)
398 TIGR03702 lip_kinase_YegS lipi 39.4 1.8E+02 0.0039 22.5 7.0 32 18-49 2-33 (293)
399 CHL00175 minD septum-site dete 38.8 75 0.0016 24.2 4.7 37 16-52 15-53 (281)
400 PRK03846 adenylylsulfate kinas 38.8 90 0.0019 22.3 4.8 37 14-50 21-59 (198)
401 PF06289 FlbD: Flagellar prote 38.7 53 0.0012 18.3 2.8 35 236-271 24-58 (60)
402 PRK02842 light-independent pro 38.7 2.3E+02 0.0049 23.5 8.1 77 15-96 96-178 (427)
403 PRK05571 ribose-5-phosphate is 38.6 1.3E+02 0.0028 20.6 5.7 74 33-118 16-90 (148)
404 PRK14483 DhaKLM operon coactiv 38.5 1.2E+02 0.0026 24.0 5.5 36 14-49 250-290 (329)
405 PRK10751 molybdopterin-guanine 38.5 1.1E+02 0.0025 21.5 5.0 42 15-56 4-47 (173)
406 cd07211 Pat_PNPLA8 Patatin-lik 38.5 46 0.00099 25.9 3.5 18 87-104 43-60 (308)
407 PF03681 UPF0150: Uncharacteri 38.5 24 0.00053 18.3 1.4 34 41-80 11-44 (48)
408 cd07222 Pat_PNPLA4 Patatin-lik 38.4 49 0.0011 24.8 3.5 23 87-110 33-55 (246)
409 COG1582 FlgEa Uncharacterized 38.4 65 0.0014 18.1 3.0 44 226-271 15-58 (67)
410 cd07213 Pat17_PNPLA8_PNPLA9_li 37.8 55 0.0012 25.2 3.8 20 87-106 36-55 (288)
411 TIGR03569 NeuB_NnaB N-acetylne 37.6 2.1E+02 0.0045 22.8 9.6 94 15-118 132-228 (329)
412 COG5023 Tubulin [Cytoskeleton] 37.6 86 0.0019 25.2 4.6 52 68-119 110-172 (443)
413 PF01075 Glyco_transf_9: Glyco 37.6 54 0.0012 24.3 3.7 37 14-50 103-144 (247)
414 COG1926 Predicted phosphoribos 37.4 1.3E+02 0.0028 22.1 5.1 46 69-114 9-55 (220)
415 COG1255 Uncharacterized protei 37.0 44 0.00095 21.6 2.5 22 31-52 24-45 (129)
416 TIGR01425 SRP54_euk signal rec 36.9 90 0.0019 25.8 4.9 37 15-51 98-136 (429)
417 PRK11168 glpC sn-glycerol-3-ph 36.5 1.9E+02 0.0042 23.5 6.9 42 15-56 160-204 (396)
418 TIGR03018 pepcterm_TyrKin exop 36.3 1.5E+02 0.0034 21.3 5.8 38 15-52 34-74 (207)
419 COG0859 RfaF ADP-heptose:LPS h 36.2 75 0.0016 25.1 4.4 35 16-50 175-215 (334)
420 PRK02399 hypothetical protein; 35.8 1.1E+02 0.0023 25.0 5.1 43 15-57 184-226 (406)
421 PF10561 UPF0565: Uncharacteri 35.4 66 0.0014 25.0 3.8 37 85-121 193-245 (303)
422 PRK13529 malate dehydrogenase; 35.3 1.9E+02 0.0042 24.9 6.6 82 18-102 296-400 (563)
423 PF10686 DUF2493: Protein of u 34.9 58 0.0013 18.9 2.7 31 16-49 31-63 (71)
424 PLN02925 4-hydroxy-3-methylbut 34.7 87 0.0019 27.6 4.6 41 44-91 630-670 (733)
425 cd07217 Pat17_PNPLA8_PNPLA9_li 34.6 35 0.00076 27.1 2.3 19 87-105 43-61 (344)
426 PF01751 Toprim: Toprim domain 34.6 1.1E+02 0.0025 18.8 4.3 35 227-261 8-42 (100)
427 PF15566 Imm18: Immunity prote 34.5 45 0.00098 17.9 2.0 30 67-97 4-33 (52)
428 PRK10867 signal recognition pa 34.5 2.7E+02 0.0059 23.2 9.0 69 37-115 177-247 (433)
429 cd01520 RHOD_YbbB Member of th 34.5 1.1E+02 0.0023 20.1 4.3 34 13-50 84-118 (128)
430 PRK11889 flhF flagellar biosyn 34.3 2.7E+02 0.0059 23.1 7.8 76 31-116 307-385 (436)
431 cd01406 SIR2-like Sir2-like: P 34.2 62 0.0014 24.1 3.5 31 74-104 169-199 (242)
432 TIGR00176 mobB molybdopterin-g 34.2 1E+02 0.0023 21.1 4.3 38 19-56 1-40 (155)
433 KOG0780 Signal recognition par 34.1 84 0.0018 25.5 4.2 35 14-48 98-134 (483)
434 COG2452 Predicted site-specifi 33.9 1.8E+02 0.0039 20.9 6.2 55 16-81 115-169 (193)
435 PRK14479 dihydroxyacetone kina 33.8 2E+02 0.0043 25.0 6.5 36 14-49 249-289 (568)
436 PRK05866 short chain dehydroge 33.8 2.2E+02 0.0048 21.9 6.9 32 19-52 42-73 (293)
437 cd08769 DAP_dppA_2 Peptidase M 33.7 1.6E+02 0.0036 22.5 5.5 50 211-266 147-198 (270)
438 PRK03482 phosphoglycerate muta 33.7 1.5E+02 0.0033 21.5 5.4 37 65-103 120-159 (215)
439 cd02033 BchX Chlorophyllide re 33.7 1.1E+02 0.0025 24.2 4.9 38 15-52 29-68 (329)
440 cd00762 NAD_bind_malic_enz NAD 33.6 1.7E+02 0.0037 22.2 5.5 84 18-104 26-126 (254)
441 TIGR03127 RuMP_HxlB 6-phospho 33.6 1.7E+02 0.0036 20.5 7.0 32 19-50 32-63 (179)
442 TIGR02113 coaC_strep phosphopa 33.4 1.4E+02 0.0031 21.1 4.9 37 15-51 111-150 (177)
443 PF03490 Varsurf_PPLC: Variant 33.4 40 0.00086 17.8 1.6 26 65-91 6-31 (51)
444 cd05007 SIS_Etherase N-acetylm 33.0 94 0.002 23.5 4.3 39 70-108 35-73 (257)
445 TIGR03607 patatin-related prot 33.0 62 0.0014 28.8 3.7 35 69-104 48-85 (739)
446 cd06292 PBP1_LacI_like_10 Liga 33.0 2.1E+02 0.0045 21.4 7.7 16 36-51 76-91 (273)
447 PLN02591 tryptophan synthase 32.9 2.2E+02 0.0047 21.6 8.5 75 17-107 80-155 (250)
448 PF13709 DUF4159: Domain of un 32.7 1.5E+02 0.0033 21.6 5.1 38 211-248 53-90 (207)
449 CHL00194 ycf39 Ycf39; Provisio 32.6 1.6E+02 0.0036 22.9 5.8 24 29-52 10-33 (317)
450 PRK06029 3-octaprenyl-4-hydrox 32.3 1.9E+02 0.0041 20.7 6.4 59 16-81 115-174 (185)
451 CHL00200 trpA tryptophan synth 32.2 2.3E+02 0.005 21.6 7.0 57 31-103 107-164 (263)
452 PF01341 Glyco_hydro_6: Glycos 32.1 88 0.0019 24.4 4.0 76 14-90 28-113 (298)
453 PLN02496 probable phosphopanto 32.1 2.1E+02 0.0045 21.0 6.1 61 16-80 132-199 (209)
454 COG2376 DAK1 Dihydroxyacetone 31.9 1.6E+02 0.0035 23.2 5.3 33 16-48 248-285 (323)
455 PRK13255 thiopurine S-methyltr 31.9 1.1E+02 0.0024 22.5 4.4 28 19-51 40-67 (218)
456 PF03949 Malic_M: Malic enzyme 31.9 1E+02 0.0022 23.4 4.1 85 18-105 26-127 (255)
457 PRK00865 glutamate racemase; P 31.7 1.5E+02 0.0033 22.5 5.2 52 211-265 5-57 (261)
458 TIGR01118 lacA galactose-6-pho 31.7 1.7E+02 0.0036 19.9 5.1 70 33-117 16-86 (141)
459 TIGR03840 TMPT_Se_Te thiopurin 31.6 73 0.0016 23.3 3.4 15 37-51 50-64 (213)
460 PRK10964 ADP-heptose:LPS hepto 31.5 94 0.002 24.3 4.3 33 16-48 178-215 (322)
461 PLN03050 pyridoxine (pyridoxam 31.5 1.3E+02 0.0028 22.7 4.7 34 17-50 61-94 (246)
462 PF03698 UPF0180: Uncharacteri 31.2 54 0.0012 19.6 2.2 19 32-50 10-28 (80)
463 PRK06490 glutamine amidotransf 31.2 2.3E+02 0.0049 21.3 7.1 83 16-102 8-102 (239)
464 PF08496 Peptidase_S49_N: Pept 31.2 1E+02 0.0023 21.2 3.8 48 44-98 98-145 (155)
465 PRK14581 hmsF outer membrane N 31.1 62 0.0013 28.5 3.3 78 14-92 46-142 (672)
466 PF12641 Flavodoxin_3: Flavodo 31.1 1.3E+02 0.0028 20.9 4.4 59 211-269 39-97 (160)
467 KOG0854 Alkyl hydroperoxide re 31.0 1.5E+02 0.0033 20.9 4.5 56 16-81 33-94 (224)
468 PRK13938 phosphoheptose isomer 31.0 1.3E+02 0.0028 21.7 4.5 26 82-107 43-68 (196)
469 TIGR00632 vsr DNA mismatch end 31.0 1.2E+02 0.0027 19.7 3.9 15 35-49 99-113 (117)
470 COG0337 AroB 3-dehydroquinate 31.0 2.9E+02 0.0062 22.4 7.4 67 17-91 34-100 (360)
471 PF13579 Glyco_trans_4_4: Glyc 30.8 1.3E+02 0.0027 19.9 4.4 32 72-104 61-92 (160)
472 PRK00771 signal recognition pa 30.7 3.2E+02 0.0069 22.8 9.4 38 15-52 93-132 (437)
473 PRK08263 short chain dehydroge 30.7 2.4E+02 0.0051 21.3 6.9 32 19-52 5-36 (275)
474 TIGR03371 cellulose_yhjQ cellu 30.6 1.2E+02 0.0026 22.4 4.6 38 18-55 3-42 (246)
475 cd01715 ETF_alpha The electron 30.5 1.9E+02 0.004 20.1 5.8 76 17-107 30-107 (168)
476 PRK05665 amidotransferase; Pro 30.3 84 0.0018 23.5 3.6 38 65-103 71-108 (240)
477 PRK04435 hypothetical protein; 30.2 1.8E+02 0.0039 19.8 6.5 76 17-92 68-146 (147)
478 TIGR00322 diphth2_R diphthamid 30.2 1.1E+02 0.0023 24.3 4.3 60 33-105 8-68 (332)
479 KOG0780 Signal recognition par 30.1 3.2E+02 0.0068 22.6 7.0 62 36-107 176-237 (483)
480 PLN02695 GDP-D-mannose-3',5'-e 30.0 2.9E+02 0.0064 22.2 9.1 36 15-53 20-55 (370)
481 COG4088 Predicted nucleotide k 29.9 69 0.0015 23.5 2.9 34 18-51 2-37 (261)
482 cd02034 CooC The accessory pro 29.9 1.4E+02 0.003 19.3 4.1 32 20-51 2-35 (116)
483 PF10412 TrwB_AAD_bind: Type I 29.8 97 0.0021 25.2 4.1 34 20-53 18-53 (386)
484 PLN02752 [acyl-carrier protein 29.7 38 0.00083 26.8 1.9 19 87-105 126-144 (343)
485 TIGR00421 ubiX_pad polyprenyl 29.6 2.1E+02 0.0045 20.3 5.9 59 16-81 112-171 (181)
486 PF05706 CDKN3: Cyclin-depende 29.6 1.4E+02 0.0031 20.9 4.3 22 74-97 123-144 (168)
487 PF14359 DUF4406: Domain of un 29.5 1.4E+02 0.0031 18.4 6.2 68 30-107 16-86 (92)
488 KOG1502 Flavonol reductase/cin 29.4 87 0.0019 24.7 3.6 32 16-49 5-36 (327)
489 PRK13054 lipid kinase; Reviewe 29.4 2.7E+02 0.0059 21.6 6.8 32 17-48 5-36 (300)
490 PRK06935 2-deoxy-D-gluconate 3 29.4 1.4E+02 0.003 22.2 4.8 48 1-52 1-48 (258)
491 PRK10416 signal recognition pa 29.2 2.9E+02 0.0063 21.8 9.5 78 32-116 186-267 (318)
492 PRK00131 aroK shikimate kinase 29.2 1.1E+02 0.0025 20.9 4.1 34 15-50 2-36 (175)
493 PRK05441 murQ N-acetylmuramic 29.2 1.2E+02 0.0025 23.7 4.3 37 71-107 49-85 (299)
494 PF02606 LpxK: Tetraacyldisacc 29.2 2.9E+02 0.0063 22.0 6.5 74 16-93 34-115 (326)
495 PRK12446 undecaprenyldiphospho 29.1 3E+02 0.0065 22.0 8.1 31 20-50 4-36 (352)
496 TIGR02193 heptsyl_trn_I lipopo 29.1 1.2E+02 0.0027 23.5 4.6 35 15-49 178-217 (319)
497 PRK12595 bifunctional 3-deoxy- 29.0 3.1E+02 0.0068 22.2 8.3 76 14-95 223-299 (360)
498 KOG0736 Peroxisome assembly fa 29.0 3.1E+02 0.0068 25.0 6.9 71 45-119 766-843 (953)
499 PF14252 DUF4347: Domain of un 28.9 1.4E+02 0.003 20.9 4.2 51 30-96 10-60 (165)
500 PRK14046 malate--CoA ligase su 28.9 60 0.0013 26.4 2.8 34 82-115 116-149 (392)
No 1
>PLN02965 Probable pheophorbidase
Probab=100.00 E-value=2.9e-40 Score=245.85 Aligned_cols=248 Identities=34% Similarity=0.534 Sum_probs=166.9
Q ss_pred eEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcCC-CcEEEEEeCcch
Q 024134 18 HFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSAD-EKVILVGHSFGG 96 (272)
Q Consensus 18 ~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~~-~~~~lvG~S~Gg 96 (272)
+|||+||++.+...|+.+++.|.+.||+|+++|+||||.|+.+....++++++++++.++++.+ +. ++++++||||||
T Consensus 5 ~vvllHG~~~~~~~w~~~~~~L~~~~~~via~Dl~G~G~S~~~~~~~~~~~~~a~dl~~~l~~l-~~~~~~~lvGhSmGG 83 (255)
T PLN02965 5 HFVFVHGASHGAWCWYKLATLLDAAGFKSTCVDLTGAGISLTDSNTVSSSDQYNRPLFALLSDL-PPDHKVILVGHSIGG 83 (255)
T ss_pred EEEEECCCCCCcCcHHHHHHHHhhCCceEEEecCCcCCCCCCCccccCCHHHHHHHHHHHHHhc-CCCCCEEEEecCcch
Confidence 5999999999999999999999878899999999999999865544578999999999999999 65 599999999999
Q ss_pred HHHHHHHhhCccceeeeeeeeccCCCCCCCchhhhhhcccCCchhhhhhhhhhccccCCCccchhhhhhhHHHHhhccCC
Q 024134 97 LSVALAADKFPHKISVAIFLTAFMPDTKHQPSYVVERFSESIPREERLDTQYSIIDESNPSRMSILFGHKFLTLKLYQLS 176 (272)
Q Consensus 97 ~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (272)
.+++.+|.++|++|+++|++++..................... ..+ ...+. ....................++...
T Consensus 84 ~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (255)
T PLN02965 84 GSVTEALCKFTDKISMAIYVAAAMVKPGSIISPRLKNVMEGTE-KIW-DYTFG--EGPDKPPTGIMMKPEFVRHYYYNQS 159 (255)
T ss_pred HHHHHHHHhCchheeEEEEEccccCCCCCCccHHHHhhhhccc-cce-eeeec--cCCCCCcchhhcCHHHHHHHHhcCC
Confidence 9999999999999999999998643222111101110000000 000 00000 0000000000111112222222222
Q ss_pred ChhHHHHHHHhccCCcc-chHHhhhcccccccccCCceeEEEEeCCCCCccHHHHHHHHhcCCCceEEEecCCCcccccC
Q 024134 177 PPEDLELAKMLVKPGLL-FTDELSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNNPVNEVMAIKGADHMAMLS 255 (272)
Q Consensus 177 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~ 255 (272)
................. ...... ........+++|+++|+|++|..+|+...+.+.+.+|++++++++++||++++|
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~vP~lvi~g~~D~~~~~~~~~~~~~~~~~a~~~~i~~~GH~~~~e 237 (255)
T PLN02965 160 PLEDYTLSSKLLRPAPVRAFQDLD--KLPPNPEAEKVPRVYIKTAKDNLFDPVRQDVMVENWPPAQTYVLEDSDHSAFFS 237 (255)
T ss_pred CHHHHHHHHHhcCCCCCcchhhhh--hccchhhcCCCCEEEEEcCCCCCCCHHHHHHHHHhCCcceEEEecCCCCchhhc
Confidence 22222222122111111 011111 011123457999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHhhC
Q 024134 256 KPQPLSDCFSQIAHKYA 272 (272)
Q Consensus 256 ~p~~~~~~i~~fl~~~~ 272 (272)
+|+++++.|.+|+++.+
T Consensus 238 ~p~~v~~~l~~~~~~~~ 254 (255)
T PLN02965 238 VPTTLFQYLLQAVSSLQ 254 (255)
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 99999999999998753
No 2
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=100.00 E-value=1.2e-38 Score=242.21 Aligned_cols=248 Identities=15% Similarity=0.178 Sum_probs=162.4
Q ss_pred CCCeEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCCCCCCCCcccc------cccchhhchHHHHHHHHHhcCCCcEE
Q 024134 15 KQKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQ------DVRSFYEYNEPLLEILASLSADEKVI 88 (272)
Q Consensus 15 ~~~~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~------~~~~~~~~~~~~~~~i~~l~~~~~~~ 88 (272)
.+++|||+||+++++..|+.+++.|+++ |+|+++|+||||.|+.+.. ..++++++++++.++++++ +.++++
T Consensus 28 ~~~~vlllHG~~~~~~~w~~~~~~L~~~-~~vi~~DlpG~G~S~~~~~~~~~~~~~~~~~~~a~~l~~~l~~l-~~~~~~ 105 (294)
T PLN02824 28 SGPALVLVHGFGGNADHWRKNTPVLAKS-HRVYAIDLLGYGYSDKPNPRSAPPNSFYTFETWGEQLNDFCSDV-VGDPAF 105 (294)
T ss_pred CCCeEEEECCCCCChhHHHHHHHHHHhC-CeEEEEcCCCCCCCCCCccccccccccCCHHHHHHHHHHHHHHh-cCCCeE
Confidence 4689999999999999999999999876 7999999999999986532 3479999999999999999 789999
Q ss_pred EEEeCcchHHHHHHHhhCccceeeeeeeeccCCCCCCCc-hhhhh----hcccCCchhhhhhhhhhccccCCCc------
Q 024134 89 LVGHSFGGLSVALAADKFPHKISVAIFLTAFMPDTKHQP-SYVVE----RFSESIPREERLDTQYSIIDESNPS------ 157 (272)
Q Consensus 89 lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~------ 157 (272)
++||||||.+++.+|.++|++|+++|++++......... ..... .+........+....+.........
T Consensus 106 lvGhS~Gg~va~~~a~~~p~~v~~lili~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (294)
T PLN02824 106 VICNSVGGVVGLQAAVDAPELVRGVMLINISLRGLHIKKQPWLGRPFIKAFQNLLRETAVGKAFFKSVATPETVKNILCQ 185 (294)
T ss_pred EEEeCHHHHHHHHHHHhChhheeEEEEECCCcccccccccchhhhHHHHHHHHHHhchhHHHHHHHhhcCHHHHHHHHHH
Confidence 999999999999999999999999999998642211100 00000 0000000000000000000000000
Q ss_pred --cchhhhhhhHHHHhhccCCChhHHHHHHHhccCCccchHHhhhcccccccccCCceeEEEEeCCCCCccHHHHHHHHh
Q 024134 158 --RMSILFGHKFLTLKLYQLSPPEDLELAKMLVKPGLLFTDELSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQ 235 (272)
Q Consensus 158 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~ 235 (272)
.......+.....................+... ............+++|+++|+|++|.++|.+.++.+.+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~i~~P~lvi~G~~D~~~~~~~~~~~~~ 258 (294)
T PLN02824 186 CYHDDSAVTDELVEAILRPGLEPGAVDVFLDFISY-------SGGPLPEELLPAVKCPVLIAWGEKDPWEPVELGRAYAN 258 (294)
T ss_pred hccChhhccHHHHHHHHhccCCchHHHHHHHHhcc-------ccccchHHHHhhcCCCeEEEEecCCCCCChHHHHHHHh
Confidence 000000011111100000000000000000000 00001112345679999999999999999999999888
Q ss_pred cCCCceEEEecCCCcccccCCCchHHHHHHHHHHhh
Q 024134 236 NNPVNEVMAIKGADHMAMLSKPQPLSDCFSQIAHKY 271 (272)
Q Consensus 236 ~~~~~~~~~~~~~gH~~~~~~p~~~~~~i~~fl~~~ 271 (272)
..+++++++++++||++++|+|+++++.|.+|++++
T Consensus 259 ~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~~ 294 (294)
T PLN02824 259 FDAVEDFIVLPGVGHCPQDEAPELVNPLIESFVARH 294 (294)
T ss_pred cCCccceEEeCCCCCChhhhCHHHHHHHHHHHHhcC
Confidence 888899999999999999999999999999999864
No 3
>PRK00870 haloalkane dehalogenase; Provisional
Probab=100.00 E-value=1.4e-38 Score=242.50 Aligned_cols=247 Identities=17% Similarity=0.092 Sum_probs=162.2
Q ss_pred CCCeEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCCCCCCCCcccc-cccchhhchHHHHHHHHHhcCCCcEEEEEeC
Q 024134 15 KQKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQ-DVRSFYEYNEPLLEILASLSADEKVILVGHS 93 (272)
Q Consensus 15 ~~~~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~-~~~~~~~~~~~~~~~i~~l~~~~~~~lvG~S 93 (272)
++|+|||+||++++...|..+++.|+++||+|+++|+||||.|+.+.. ..++++++++++.++++++ +.++++++|||
T Consensus 45 ~~~~lvliHG~~~~~~~w~~~~~~L~~~gy~vi~~Dl~G~G~S~~~~~~~~~~~~~~a~~l~~~l~~l-~~~~v~lvGhS 123 (302)
T PRK00870 45 DGPPVLLLHGEPSWSYLYRKMIPILAAAGHRVIAPDLIGFGRSDKPTRREDYTYARHVEWMRSWFEQL-DLTDVTLVCQD 123 (302)
T ss_pred CCCEEEEECCCCCchhhHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCcccCCHHHHHHHHHHHHHHc-CCCCEEEEEEC
Confidence 478999999999999999999999987899999999999999976542 3478999999999999999 88999999999
Q ss_pred cchHHHHHHHhhCccceeeeeeeeccCCCCCCCchhhhhhcccCCc--hhhhhhhhhhccccCCCccchhhhhhhHHHHh
Q 024134 94 FGGLSVALAADKFPHKISVAIFLTAFMPDTKHQPSYVVERFSESIP--REERLDTQYSIIDESNPSRMSILFGHKFLTLK 171 (272)
Q Consensus 94 ~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (272)
|||.+++.+|.++|++|+++|++++..+............+..... ............. ............
T Consensus 124 ~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ 196 (302)
T PRK00870 124 WGGLIGLRLAAEHPDRFARLVVANTGLPTGDGPMPDAFWAWRAFSQYSPVLPVGRLVNGGT-------VRDLSDAVRAAY 196 (302)
T ss_pred hHHHHHHHHHHhChhheeEEEEeCCCCCCccccchHHHhhhhcccccCchhhHHHHhhccc-------cccCCHHHHHHh
Confidence 9999999999999999999999987543222111101111110000 0000000000000 000111111111
Q ss_pred hccCCChhHH----HHHHHhccCCccchHHhhhcccccccccCCceeEEEEeCCCCCccHHHHHHHHhcCCCce---EEE
Q 024134 172 LYQLSPPEDL----ELAKMLVKPGLLFTDELSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNNPVNE---VMA 244 (272)
Q Consensus 172 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~---~~~ 244 (272)
......... ............................+++|+++|+|++|.++|... +.+.+.+++++ +++
T Consensus 197 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~-~~~~~~~~~~~~~~~~~ 274 (302)
T PRK00870 197 -DAPFPDESYKAGARAFPLLVPTSPDDPAVAANRAAWAVLERWDKPFLTAFSDSDPITGGGD-AILQKRIPGAAGQPHPT 274 (302)
T ss_pred -hcccCChhhhcchhhhhhcCCCCCCCcchHHHHHHHHhhhcCCCceEEEecCCCCcccCch-HHHHhhcccccccceee
Confidence 000000000 000000000000000000001112345679999999999999999866 88888888776 889
Q ss_pred ecCCCcccccCCCchHHHHHHHHHHhh
Q 024134 245 IKGADHMAMLSKPQPLSDCFSQIAHKY 271 (272)
Q Consensus 245 ~~~~gH~~~~~~p~~~~~~i~~fl~~~ 271 (272)
++++||++++|+|+++++.|.+|++++
T Consensus 275 i~~~gH~~~~e~p~~~~~~l~~fl~~~ 301 (302)
T PRK00870 275 IKGAGHFLQEDSGEELAEAVLEFIRAT 301 (302)
T ss_pred ecCCCccchhhChHHHHHHHHHHHhcC
Confidence 999999999999999999999999875
No 4
>KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism]
Probab=100.00 E-value=8.1e-38 Score=226.57 Aligned_cols=254 Identities=18% Similarity=0.205 Sum_probs=172.7
Q ss_pred ccCCCeEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCCCCCCCCcccc-cccchhhchHHHHHHHHHhcCCCcEEEEE
Q 024134 13 AKKQKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQ-DVRSFYEYNEPLLEILASLSADEKVILVG 91 (272)
Q Consensus 13 ~~~~~~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~-~~~~~~~~~~~~~~~i~~l~~~~~~~lvG 91 (272)
.+++|.|+++||++.+..+|+...+.|+.+||+|+++|+||+|.|+.+.. ..|++..++.|+..+++++ +.++++++|
T Consensus 41 ~~~gP~illlHGfPe~wyswr~q~~~la~~~~rviA~DlrGyG~Sd~P~~~~~Yt~~~l~~di~~lld~L-g~~k~~lvg 119 (322)
T KOG4178|consen 41 PGDGPIVLLLHGFPESWYSWRHQIPGLASRGYRVIAPDLRGYGFSDAPPHISEYTIDELVGDIVALLDHL-GLKKAFLVG 119 (322)
T ss_pred CCCCCEEEEEccCCccchhhhhhhhhhhhcceEEEecCCCCCCCCCCCCCcceeeHHHHHHHHHHHHHHh-ccceeEEEe
Confidence 36789999999999999999999999999999999999999999999887 6799999999999999999 899999999
Q ss_pred eCcchHHHHHHHhhCccceeeeeeeeccCCCCCCCchhhhhhcccCCchhhhhhhhhhccccCCCccchhhhhhhHHHHh
Q 024134 92 HSFGGLSVALAADKFPHKISVAIFLTAFMPDTKHQPSYVVERFSESIPREERLDTQYSIIDESNPSRMSILFGHKFLTLK 171 (272)
Q Consensus 92 ~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (272)
|+||+++|+.+|..+|++|+++|+++............ ..... ....+....+.......... .....+......
T Consensus 120 HDwGaivaw~la~~~Perv~~lv~~nv~~~~p~~~~~~---~~~~~-f~~~~y~~~fQ~~~~~E~~~-s~~~~~~~~~~~ 194 (322)
T KOG4178|consen 120 HDWGAIVAWRLALFYPERVDGLVTLNVPFPNPKLKPLD---SSKAI-FGKSYYICLFQEPGKPETEL-SKDDTEMLVKTF 194 (322)
T ss_pred ccchhHHHHHHHHhChhhcceEEEecCCCCCcccchhh---hhccc-cCccceeEeccccCcchhhh-ccchhHHhHHhh
Confidence 99999999999999999999999998765521111110 00000 00111111010000000000 000000000000
Q ss_pred h-----------------ccCCChhHHHHHHHhccCC-----ccchHHhhhccc--ccccccCCceeEEEEeCCCCCccH
Q 024134 172 L-----------------YQLSPPEDLELAKMLVKPG-----LLFTDELSKANE--FSNEGYGSVKRDFVGSDKDNCIPK 227 (272)
Q Consensus 172 ~-----------------~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~--~~~~~~~~~P~l~i~g~~D~~~~~ 227 (272)
. ......++.+......... -.+.+.+.+... ......+++|+++|+|++|.+.+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~w~t~edi~~~~~~f~~~g~~gplNyyrn~~r~w~a~~~~~~~i~iPv~fi~G~~D~v~~~ 274 (322)
T KOG4178|consen 195 RTRKTPGPLIVPKQPNENPLWLTEEDIAFYVSKFQIDGFTGPLNYYRNFRRNWEAAPWALAKITIPVLFIWGDLDPVLPY 274 (322)
T ss_pred hccccCCccccCCCCCCccchhhHHHHHHHHhccccccccccchhhHHHhhCchhccccccccccceEEEEecCcccccc
Confidence 0 0001122222222222111 112344444432 334566799999999999999886
Q ss_pred H-HHHHHHhcCCCc-eEEEecCCCcccccCCCchHHHHHHHHHHhhC
Q 024134 228 E-FQQWMIQNNPVN-EVMAIKGADHMAMLSKPQPLSDCFSQIAHKYA 272 (272)
Q Consensus 228 ~-~~~~~~~~~~~~-~~~~~~~~gH~~~~~~p~~~~~~i~~fl~~~~ 272 (272)
. ....+.+..|+. +.++++|+||+++.|+|+++++.+.+|++++.
T Consensus 275 p~~~~~~rk~vp~l~~~vv~~~~gH~vqqe~p~~v~~~i~~f~~~~~ 321 (322)
T KOG4178|consen 275 PIFGELYRKDVPRLTERVVIEGIGHFVQQEKPQEVNQAILGFINSFS 321 (322)
T ss_pred hhHHHHHHHhhccccceEEecCCcccccccCHHHHHHHHHHHHHhhc
Confidence 5 556666677765 88999999999999999999999999999863
No 5
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=100.00 E-value=2.7e-37 Score=230.76 Aligned_cols=260 Identities=35% Similarity=0.594 Sum_probs=176.0
Q ss_pred HHhhhhhhccCCCeEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcCC
Q 024134 5 EKVKKMTEAKKQKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSAD 84 (272)
Q Consensus 5 ~~~~~~~~~~~~~~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~~ 84 (272)
+.+.+++..+++|+|||+||++.++..|..+...|.++||+|+++|+||||.|.......++++++++++.++++++...
T Consensus 7 ~~~~~~~~~~~~p~vvliHG~~~~~~~w~~~~~~L~~~g~~vi~~dl~g~G~s~~~~~~~~~~~~~~~~l~~~i~~l~~~ 86 (273)
T PLN02211 7 EEVTDMKPNRQPPHFVLIHGISGGSWCWYKIRCLMENSGYKVTCIDLKSAGIDQSDADSVTTFDEYNKPLIDFLSSLPEN 86 (273)
T ss_pred cccccccccCCCCeEEEECCCCCCcCcHHHHHHHHHhCCCEEEEecccCCCCCCCCcccCCCHHHHHHHHHHHHHhcCCC
Confidence 45556666677899999999999999999999999888999999999999988654444479999999999999998335
Q ss_pred CcEEEEEeCcchHHHHHHHhhCccceeeeeeeeccCCCCCCCchhhhhhcccCCchhhhhhhhhh--ccccCCCccchhh
Q 024134 85 EKVILVGHSFGGLSVALAADKFPHKISVAIFLTAFMPDTKHQPSYVVERFSESIPREERLDTQYS--IIDESNPSRMSIL 162 (272)
Q Consensus 85 ~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 162 (272)
++++++||||||.+++.++.++|++|+++|++++.....+..... .+............... .............
T Consensus 87 ~~v~lvGhS~GG~v~~~~a~~~p~~v~~lv~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (273)
T PLN02211 87 EKVILVGHSAGGLSVTQAIHRFPKKICLAVYVAATMLKLGFQTDE---DMKDGVPDLSEFGDVYELGFGLGPDQPPTSAI 163 (273)
T ss_pred CCEEEEEECchHHHHHHHHHhChhheeEEEEeccccCCCCCCHHH---HHhccccchhhhccceeeeeccCCCCCCceee
Confidence 899999999999999999999999999999998764432222111 01000000000000000 0000000000111
Q ss_pred hhhhHHHHhhccCCChhHHHHHHHhccCCccchHHhhhccccccc-ccCCceeEEEEeCCCCCccHHHHHHHHhcCCCce
Q 024134 163 FGHKFLTLKLYQLSPPEDLELAKMLVKPGLLFTDELSKANEFSNE-GYGSVKRDFVGSDKDNCIPKEFQQWMIQNNPVNE 241 (272)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~ 241 (272)
..+++....++...+...........+..... .+......... +..++|+++|.|++|..+|++.++.+.+.+++.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~vP~l~I~g~~D~~ip~~~~~~m~~~~~~~~ 241 (273)
T PLN02211 164 IKKEFRRKILYQMSPQEDSTLAAMLLRPGPIL--ALRSARFEEETGDIDKVPRVYIKTLHDHVVKPEQQEAMIKRWPPSQ 241 (273)
T ss_pred eCHHHHHHHHhcCCCHHHHHHHHHhcCCcCcc--ccccccccccccccCccceEEEEeCCCCCCCHHHHHHHHHhCCccE
Confidence 22333344445555544444333333322111 11111111111 2227899999999999999999999999999999
Q ss_pred EEEecCCCcccccCCCchHHHHHHHHHHh
Q 024134 242 VMAIKGADHMAMLSKPQPLSDCFSQIAHK 270 (272)
Q Consensus 242 ~~~~~~~gH~~~~~~p~~~~~~i~~fl~~ 270 (272)
++.++ +||.+++++|+++++.|.++...
T Consensus 242 ~~~l~-~gH~p~ls~P~~~~~~i~~~a~~ 269 (273)
T PLN02211 242 VYELE-SDHSPFFSTPFLLFGLLIKAAAS 269 (273)
T ss_pred EEEEC-CCCCccccCHHHHHHHHHHHHHH
Confidence 99997 89999999999999999988764
No 6
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=100.00 E-value=5.1e-38 Score=236.62 Aligned_cols=242 Identities=12% Similarity=0.076 Sum_probs=160.7
Q ss_pred CCCeEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcCCCcEEEEEeCc
Q 024134 15 KQKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSADEKVILVGHSF 94 (272)
Q Consensus 15 ~~~~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~lvG~S~ 94 (272)
++++|||+||++++...|..+++.|.+ +|+|+++|+||||.|+.+.. .++++++++++.++++++ +.++++|+||||
T Consensus 24 ~~~plvllHG~~~~~~~w~~~~~~L~~-~~~vi~~Dl~G~G~S~~~~~-~~~~~~~~~~~~~~i~~l-~~~~~~LvG~S~ 100 (276)
T TIGR02240 24 GLTPLLIFNGIGANLELVFPFIEALDP-DLEVIAFDVPGVGGSSTPRH-PYRFPGLAKLAARMLDYL-DYGQVNAIGVSW 100 (276)
T ss_pred CCCcEEEEeCCCcchHHHHHHHHHhcc-CceEEEECCCCCCCCCCCCC-cCcHHHHHHHHHHHHHHh-CcCceEEEEECH
Confidence 457999999999999999999999975 59999999999999986543 478999999999999999 889999999999
Q ss_pred chHHHHHHHhhCccceeeeeeeeccCCCCCCCch-hhhhhcccCCchhhhhhhhhhccccCCCccchhhhhhhHHHHhhc
Q 024134 95 GGLSVALAADKFPHKISVAIFLTAFMPDTKHQPS-YVVERFSESIPREERLDTQYSIIDESNPSRMSILFGHKFLTLKLY 173 (272)
Q Consensus 95 Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (272)
||.+++.+|.++|++|+++|++++.......... ........ .........................+........
T Consensus 101 GG~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (276)
T TIGR02240 101 GGALAQQFAHDYPERCKKLILAATAAGAVMVPGKPKVLMMMAS---PRRYIQPSHGIHIAPDIYGGAFRRDPELAMAHAS 177 (276)
T ss_pred HHHHHHHHHHHCHHHhhheEEeccCCccccCCCchhHHHHhcC---chhhhccccccchhhhhccceeeccchhhhhhhh
Confidence 9999999999999999999999987532111110 00000000 0000000000000000000000000000000000
Q ss_pred cCCChhHHHHHHHhccCCccchHHhhhcccccccccCCceeEEEEeCCCCCccHHHHHHHHhcCCCceEEEecCCCcccc
Q 024134 174 QLSPPEDLELAKMLVKPGLLFTDELSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNNPVNEVMAIKGADHMAM 253 (272)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~ 253 (272)
.............. ... ........+..+++|+++|+|++|+++|++..+.+.+.+|++++++++ +||+++
T Consensus 178 ~~~~~~~~~~~~~~-------~~~-~~~~~~~~l~~i~~P~lii~G~~D~~v~~~~~~~l~~~~~~~~~~~i~-~gH~~~ 248 (276)
T TIGR02240 178 KVRSGGKLGYYWQL-------FAG-LGWTSIHWLHKIQQPTLVLAGDDDPIIPLINMRLLAWRIPNAELHIID-DGHLFL 248 (276)
T ss_pred hcccCCCchHHHHH-------HHH-cCCchhhHhhcCCCCEEEEEeCCCCcCCHHHHHHHHHhCCCCEEEEEc-CCCchh
Confidence 00000000000000 000 001112234567999999999999999999999999999999999998 599999
Q ss_pred cCCCchHHHHHHHHHHhh
Q 024134 254 LSKPQPLSDCFSQIAHKY 271 (272)
Q Consensus 254 ~~~p~~~~~~i~~fl~~~ 271 (272)
+|+|+++++.|.+|+++.
T Consensus 249 ~e~p~~~~~~i~~fl~~~ 266 (276)
T TIGR02240 249 ITRAEAVAPIIMKFLAEE 266 (276)
T ss_pred hccHHHHHHHHHHHHHHh
Confidence 999999999999999864
No 7
>PRK03592 haloalkane dehalogenase; Provisional
Probab=100.00 E-value=8.2e-38 Score=237.80 Aligned_cols=255 Identities=15% Similarity=0.188 Sum_probs=159.6
Q ss_pred cCCCeEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcCCCcEEEEEeC
Q 024134 14 KKQKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSADEKVILVGHS 93 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~lvG~S 93 (272)
+++++|||+||++++...|+.+++.|+++ ++|+++|+||||.|+.+.. .++++++++++.++++++ +.++++++|||
T Consensus 25 G~g~~vvllHG~~~~~~~w~~~~~~L~~~-~~via~D~~G~G~S~~~~~-~~~~~~~a~dl~~ll~~l-~~~~~~lvGhS 101 (295)
T PRK03592 25 GEGDPIVFLHGNPTSSYLWRNIIPHLAGL-GRCLAPDLIGMGASDKPDI-DYTFADHARYLDAWFDAL-GLDDVVLVGHD 101 (295)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhhC-CEEEEEcCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHh-CCCCeEEEEEC
Confidence 56789999999999999999999999877 5999999999999987654 379999999999999999 88999999999
Q ss_pred cchHHHHHHHhhCccceeeeeeeeccCCCCCCC-chhhhhhcccCCch----hhhhhhhhhccccCCCccchhhhhhhHH
Q 024134 94 FGGLSVALAADKFPHKISVAIFLTAFMPDTKHQ-PSYVVERFSESIPR----EERLDTQYSIIDESNPSRMSILFGHKFL 168 (272)
Q Consensus 94 ~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (272)
|||.+++.+|.++|++|+++|++++........ .............. ......................+.++..
T Consensus 102 ~Gg~ia~~~a~~~p~~v~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (295)
T PRK03592 102 WGSALGFDWAARHPDRVRGIAFMEAIVRPMTWDDFPPAVRELFQALRSPGEGEEMVLEENVFIERVLPGSILRPLSDEEM 181 (295)
T ss_pred HHHHHHHHHHHhChhheeEEEEECCCCCCcchhhcchhHHHHHHHHhCcccccccccchhhHHhhcccCcccccCCHHHH
Confidence 999999999999999999999999843221100 00000000000000 0000000000000000000000111111
Q ss_pred HHhhccCCChhHHHHHHHhccCCc--cchHHhh--hcccccccccCCceeEEEEeCCCCCccHH-HHHHHHhcCCCceEE
Q 024134 169 TLKLYQLSPPEDLELAKMLVKPGL--LFTDELS--KANEFSNEGYGSVKRDFVGSDKDNCIPKE-FQQWMIQNNPVNEVM 243 (272)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~P~l~i~g~~D~~~~~~-~~~~~~~~~~~~~~~ 243 (272)
....................+... ....... ..........+++|+|+|+|++|.++++. ..+.+.+..++++++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~~~~~~~~~ 261 (295)
T PRK03592 182 AVYRRPFPTPESRRPTLSWPRELPIDGEPADVVALVEEYAQWLATSDVPKLLINAEPGAILTTGAIRDWCRSWPNQLEIT 261 (295)
T ss_pred HHHHhhcCCchhhhhhhhhhhhcCCCCcchhhHhhhhHhHHHhccCCCCeEEEeccCCcccCcHHHHHHHHHhhhhccee
Confidence 111100001111111111100000 0000000 00011224557999999999999999544 444445567889999
Q ss_pred EecCCCcccccCCCchHHHHHHHHHHhh
Q 024134 244 AIKGADHMAMLSKPQPLSDCFSQIAHKY 271 (272)
Q Consensus 244 ~~~~~gH~~~~~~p~~~~~~i~~fl~~~ 271 (272)
+++++||+++.|+|+++++.|.+|+++.
T Consensus 262 ~i~~~gH~~~~e~p~~v~~~i~~fl~~~ 289 (295)
T PRK03592 262 VFGAGLHFAQEDSPEEIGAAIAAWLRRL 289 (295)
T ss_pred eccCcchhhhhcCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999864
No 8
>PRK03204 haloalkane dehalogenase; Provisional
Probab=100.00 E-value=3.7e-37 Score=232.18 Aligned_cols=248 Identities=12% Similarity=0.086 Sum_probs=156.5
Q ss_pred cCCCeEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcCCCcEEEEEeC
Q 024134 14 KKQKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSADEKVILVGHS 93 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~lvG~S 93 (272)
+++++|||+||++.+...|+.+.+.|.+ +|+|+++|+||||.|+.+....++.+++++++.++++++ +.++++++|||
T Consensus 32 G~~~~iv~lHG~~~~~~~~~~~~~~l~~-~~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~lvG~S 109 (286)
T PRK03204 32 GTGPPILLCHGNPTWSFLYRDIIVALRD-RFRCVAPDYLGFGLSERPSGFGYQIDEHARVIGEFVDHL-GLDRYLSMGQD 109 (286)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHHhC-CcEEEEECCCCCCCCCCCCccccCHHHHHHHHHHHHHHh-CCCCEEEEEEC
Confidence 4578999999999999999999999974 599999999999999876544478899999999999999 88999999999
Q ss_pred cchHHHHHHHhhCccceeeeeeeeccCCCCCCCchhhhhhcccCCc-hhhhhhh-hhhccccCCCccchhhhhhhHHHHh
Q 024134 94 FGGLSVALAADKFPHKISVAIFLTAFMPDTKHQPSYVVERFSESIP-REERLDT-QYSIIDESNPSRMSILFGHKFLTLK 171 (272)
Q Consensus 94 ~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (272)
|||.+++.++..+|++|+++|++++...............+..... ....... .+......... ....+.......
T Consensus 110 ~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 187 (286)
T PRK03204 110 WGGPISMAVAVERADRVRGVVLGNTWFWPADTLAMKAFSRVMSSPPVQYAILRRNFFVERLIPAGT--EHRPSSAVMAHY 187 (286)
T ss_pred ccHHHHHHHHHhChhheeEEEEECccccCCCchhHHHHHHHhccccchhhhhhhhHHHHHhccccc--cCCCCHHHHHHh
Confidence 9999999999999999999999887532111000000000000000 0000000 00000000000 000001111111
Q ss_pred hccCCChhHHHHHHHh---ccCCccchHHhhhcccccccccCCceeEEEEeCCCCCccHH-HHHHHHhcCCCceEEEecC
Q 024134 172 LYQLSPPEDLELAKML---VKPGLLFTDELSKANEFSNEGYGSVKRDFVGSDKDNCIPKE-FQQWMIQNNPVNEVMAIKG 247 (272)
Q Consensus 172 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~-~~~~~~~~~~~~~~~~~~~ 247 (272)
................ ..........+.. ... ...+++|+++|+|++|.++++. ..+.+.+.+|+++++++++
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~PtliI~G~~D~~~~~~~~~~~~~~~ip~~~~~~i~~ 264 (286)
T PRK03204 188 RAVQPNAAARRGVAEMPKQILAARPLLARLAR--EVP-ATLGTKPTLLVWGMKDVAFRPKTILPRLRATFPDHVLVELPN 264 (286)
T ss_pred cCCCCCHHHHHHHHHHHHhcchhhHHHHHhhh--hhh-hhcCCCCeEEEecCCCcccCcHHHHHHHHHhcCCCeEEEcCC
Confidence 0000000100000000 0000000011100 000 0112899999999999988654 6788899999999999999
Q ss_pred CCcccccCCCchHHHHHHHHH
Q 024134 248 ADHMAMLSKPQPLSDCFSQIA 268 (272)
Q Consensus 248 ~gH~~~~~~p~~~~~~i~~fl 268 (272)
+||++++|+|+++++.|.+||
T Consensus 265 aGH~~~~e~Pe~~~~~i~~~~ 285 (286)
T PRK03204 265 AKHFIQEDAPDRIAAAIIERF 285 (286)
T ss_pred CcccccccCHHHHHHHHHHhc
Confidence 999999999999999999997
No 9
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=100.00 E-value=8.2e-37 Score=236.98 Aligned_cols=251 Identities=16% Similarity=0.103 Sum_probs=157.9
Q ss_pred CCeEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcCCCcEEEEEeCcc
Q 024134 16 QKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSADEKVILVGHSFG 95 (272)
Q Consensus 16 ~~~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~lvG~S~G 95 (272)
+|+|||+||++++...|.++++.|++ +|+|+++|+||||.|+.+....++++++++++.++++++ +.++++|+|||||
T Consensus 88 gp~lvllHG~~~~~~~w~~~~~~L~~-~~~via~Dl~G~G~S~~~~~~~~~~~~~a~~l~~~l~~l-~~~~~~lvGhS~G 165 (360)
T PLN02679 88 GPPVLLVHGFGASIPHWRRNIGVLAK-NYTVYAIDLLGFGASDKPPGFSYTMETWAELILDFLEEV-VQKPTVLIGNSVG 165 (360)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc-CCEEEEECCCCCCCCCCCCCccccHHHHHHHHHHHHHHh-cCCCeEEEEECHH
Confidence 48999999999999999999999975 699999999999999876544579999999999999999 8899999999999
Q ss_pred hHHHHHHHh-hCccceeeeeeeeccCCCCCCCc-hhhhhhcccCCchhhhhhhhhhccccC----CCccchhhhhhhHHH
Q 024134 96 GLSVALAAD-KFPHKISVAIFLTAFMPDTKHQP-SYVVERFSESIPREERLDTQYSIIDES----NPSRMSILFGHKFLT 169 (272)
Q Consensus 96 g~~a~~~a~-~~p~~v~~lvl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 169 (272)
|.+++.++. .+|++|+++|++++......... ........ ................. .... ........+.
T Consensus 166 g~ia~~~a~~~~P~rV~~LVLi~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 242 (360)
T PLN02679 166 SLACVIAASESTRDLVRGLVLLNCAGGMNNKAVVDDWRIKLL--LPLLWLIDFLLKQRGIASALFNRVK-QRDNLKNILL 242 (360)
T ss_pred HHHHHHHHHhcChhhcCEEEEECCccccccccccchHHHhhh--cchHHHHHHHhhchhhHHHHHHHhc-CHHHHHHHHH
Confidence 999999887 47999999999998642211110 00000000 00000000000000000 0000 0000000000
Q ss_pred HhhccC--CChhHHHHHHHhccCCc---cchHHhh---hcccccccccCCceeEEEEeCCCCCccHHH-----HHHHHhc
Q 024134 170 LKLYQL--SPPEDLELAKMLVKPGL---LFTDELS---KANEFSNEGYGSVKRDFVGSDKDNCIPKEF-----QQWMIQN 236 (272)
Q Consensus 170 ~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~---~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~-----~~~~~~~ 236 (272)
..+... ................. .+..... ..........+++|+|+|+|++|.++|++. .+.+.+.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PtLii~G~~D~~~p~~~~~~~~~~~l~~~ 322 (360)
T PLN02679 243 SVYGNKEAVDDELVEIIRGPADDEGALDAFVSIVTGPPGPNPIKLIPRISLPILVLWGDQDPFTPLDGPVGKYFSSLPSQ 322 (360)
T ss_pred HhccCcccCCHHHHHHHHhhccCCChHHHHHHHHhcCCCCCHHHHhhhcCCCEEEEEeCCCCCcCchhhHHHHHHhhhcc
Confidence 000000 00111111100000000 0000000 011112345679999999999999998763 3456677
Q ss_pred CCCceEEEecCCCcccccCCCchHHHHHHHHHHhh
Q 024134 237 NPVNEVMAIKGADHMAMLSKPQPLSDCFSQIAHKY 271 (272)
Q Consensus 237 ~~~~~~~~~~~~gH~~~~~~p~~~~~~i~~fl~~~ 271 (272)
+|++++++++++||++++|+|+++++.|.+||++.
T Consensus 323 ip~~~l~~i~~aGH~~~~E~Pe~~~~~I~~FL~~~ 357 (360)
T PLN02679 323 LPNVTLYVLEGVGHCPHDDRPDLVHEKLLPWLAQL 357 (360)
T ss_pred CCceEEEEcCCCCCCccccCHHHHHHHHHHHHHhc
Confidence 89999999999999999999999999999999864
No 10
>PRK10673 acyl-CoA esterase; Provisional
Probab=100.00 E-value=2.5e-36 Score=225.44 Aligned_cols=235 Identities=15% Similarity=0.194 Sum_probs=161.1
Q ss_pred cCCCeEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcCCCcEEEEEeC
Q 024134 14 KKQKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSADEKVILVGHS 93 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~lvG~S 93 (272)
+++|+|||+||++++...|..+...|++ +|+|+++|+||||.|..+.. ++++++++|+.++++.+ +.++++++|||
T Consensus 14 ~~~~~iv~lhG~~~~~~~~~~~~~~l~~-~~~vi~~D~~G~G~s~~~~~--~~~~~~~~d~~~~l~~l-~~~~~~lvGhS 89 (255)
T PRK10673 14 HNNSPIVLVHGLFGSLDNLGVLARDLVN-DHDIIQVDMRNHGLSPRDPV--MNYPAMAQDLLDTLDAL-QIEKATFIGHS 89 (255)
T ss_pred CCCCCEEEECCCCCchhHHHHHHHHHhh-CCeEEEECCCCCCCCCCCCC--CCHHHHHHHHHHHHHHc-CCCceEEEEEC
Confidence 5678999999999999999999999974 59999999999999986543 79999999999999999 88899999999
Q ss_pred cchHHHHHHHhhCccceeeeeeeeccCCCCCCCchhhhhhcccCCchhhhhhhhhhccccCCCccchhhhhhhHHHHhhc
Q 024134 94 FGGLSVALAADKFPHKISVAIFLTAFMPDTKHQPSYVVERFSESIPREERLDTQYSIIDESNPSRMSILFGHKFLTLKLY 173 (272)
Q Consensus 94 ~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (272)
|||.+++.+|.++|++|+++|++++.......... .... ..+ ..... .. .. ........+....
T Consensus 90 ~Gg~va~~~a~~~~~~v~~lvli~~~~~~~~~~~~---~~~~-----~~~-~~~~~-~~-~~----~~~~~~~~~~~~~- 153 (255)
T PRK10673 90 MGGKAVMALTALAPDRIDKLVAIDIAPVDYHVRRH---DEIF-----AAI-NAVSE-AG-AT----TRQQAAAIMRQHL- 153 (255)
T ss_pred HHHHHHHHHHHhCHhhcceEEEEecCCCCccchhh---HHHH-----HHH-HHhhh-cc-cc----cHHHHHHHHHHhc-
Confidence 99999999999999999999999864221110000 0000 000 00000 00 00 0000000000000
Q ss_pred cCCChhHHHHHHHhccCCc------cchHHhhhcccccccccCCceeEEEEeCCCCCccHHHHHHHHhcCCCceEEEecC
Q 024134 174 QLSPPEDLELAKMLVKPGL------LFTDELSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNNPVNEVMAIKG 247 (272)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (272)
................. .....+...........+++|+|+|+|++|..++++..+.+.+.+++++++++++
T Consensus 154 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (255)
T PRK10673 154 --NEEGVIQFLLKSFVDGEWRFNVPVLWDQYPHIVGWEKIPAWPHPALFIRGGNSPYVTEAYRDDLLAQFPQARAHVIAG 231 (255)
T ss_pred --CCHHHHHHHHhcCCcceeEeeHHHHHHhHHHHhCCcccCCCCCCeEEEECCCCCCCCHHHHHHHHHhCCCcEEEEeCC
Confidence 00000001100000000 0011111111223344568999999999999999999999999999999999999
Q ss_pred CCcccccCCCchHHHHHHHHHHh
Q 024134 248 ADHMAMLSKPQPLSDCFSQIAHK 270 (272)
Q Consensus 248 ~gH~~~~~~p~~~~~~i~~fl~~ 270 (272)
+||++++++|+++++.|.+||++
T Consensus 232 ~gH~~~~~~p~~~~~~l~~fl~~ 254 (255)
T PRK10673 232 AGHWVHAEKPDAVLRAIRRYLND 254 (255)
T ss_pred CCCeeeccCHHHHHHHHHHHHhc
Confidence 99999999999999999999975
No 11
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=100.00 E-value=1.4e-36 Score=230.00 Aligned_cols=245 Identities=17% Similarity=0.154 Sum_probs=155.7
Q ss_pred ccCCCeEEEEecCCCcchhHHhh---HHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcCCCcEEE
Q 024134 13 AKKQKHFVLVHGSNHGAWCWYKV---KPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSADEKVIL 89 (272)
Q Consensus 13 ~~~~~~vv~lhG~~~~~~~~~~~---~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~l 89 (272)
.+++|+|||+||++.+...|..+ +..|.+.||+|+++|+||||.|+.+.........+++++.++++.+ +.+++++
T Consensus 27 ~g~~~~ivllHG~~~~~~~~~~~~~~~~~l~~~~~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~l~~~l~~l-~~~~~~l 105 (282)
T TIGR03343 27 AGNGEAVIMLHGGGPGAGGWSNYYRNIGPFVDAGYRVILKDSPGFNKSDAVVMDEQRGLVNARAVKGLMDAL-DIEKAHL 105 (282)
T ss_pred cCCCCeEEEECCCCCchhhHHHHHHHHHHHHhCCCEEEEECCCCCCCCCCCcCcccccchhHHHHHHHHHHc-CCCCeeE
Confidence 35778999999999888777643 4566667899999999999999865422122225688999999999 8899999
Q ss_pred EEeCcchHHHHHHHhhCccceeeeeeeeccCCCCCC--Cch-hhhhhcccC---CchhhhhhhhhhccccCCCccchhhh
Q 024134 90 VGHSFGGLSVALAADKFPHKISVAIFLTAFMPDTKH--QPS-YVVERFSES---IPREERLDTQYSIIDESNPSRMSILF 163 (272)
Q Consensus 90 vG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~--~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (272)
+||||||.+++.+|.++|++|+++|++++....... ... .....+... .....+ ...+..... . ....
T Consensus 106 vG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~---~~~~ 179 (282)
T TIGR03343 106 VGNSMGGATALNFALEYPDRIGKLILMGPGGLGPSLFAPMPMEGIKLLFKLYAEPSYETL-KQMLNVFLF--D---QSLI 179 (282)
T ss_pred EEECchHHHHHHHHHhChHhhceEEEECCCCCCccccccCchHHHHHHHHHhcCCCHHHH-HHHHhhCcc--C---cccC
Confidence 999999999999999999999999999875321100 000 000000000 000000 000000000 0 0000
Q ss_pred hhhHHHHhhcc-CCChhHH-HHHHHhccCCccchHHhhhcccccccccCCceeEEEEeCCCCCccHHHHHHHHhcCCCce
Q 024134 164 GHKFLTLKLYQ-LSPPEDL-ELAKMLVKPGLLFTDELSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNNPVNE 241 (272)
Q Consensus 164 ~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~ 241 (272)
........... ....... ...... ... .+...........+++|+++++|++|.++|++.++.+.+.+|+++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~l~~i~~Pvlli~G~~D~~v~~~~~~~~~~~~~~~~ 253 (282)
T TIGR03343 180 TEELLQGRWENIQRQPEHLKNFLISS-QKA-----PLSTWDVTARLGEIKAKTLVTWGRDDRFVPLDHGLKLLWNMPDAQ 253 (282)
T ss_pred cHHHHHhHHHHhhcCHHHHHHHHHhc-ccc-----ccccchHHHHHhhCCCCEEEEEccCCCcCCchhHHHHHHhCCCCE
Confidence 00100000000 0000000 000000 000 000111122345679999999999999999999999999999999
Q ss_pred EEEecCCCcccccCCCchHHHHHHHHHHh
Q 024134 242 VMAIKGADHMAMLSKPQPLSDCFSQIAHK 270 (272)
Q Consensus 242 ~~~~~~~gH~~~~~~p~~~~~~i~~fl~~ 270 (272)
+++++++||+++.|+|+++++.|.+|+++
T Consensus 254 ~~~i~~agH~~~~e~p~~~~~~i~~fl~~ 282 (282)
T TIGR03343 254 LHVFSRCGHWAQWEHADAFNRLVIDFLRN 282 (282)
T ss_pred EEEeCCCCcCCcccCHHHHHHHHHHHhhC
Confidence 99999999999999999999999999963
No 12
>PRK10349 carboxylesterase BioH; Provisional
Probab=100.00 E-value=3.3e-36 Score=224.58 Aligned_cols=235 Identities=17% Similarity=0.172 Sum_probs=151.8
Q ss_pred cCCC-eEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcCCCcEEEEEe
Q 024134 14 KKQK-HFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSADEKVILVGH 92 (272)
Q Consensus 14 ~~~~-~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~lvG~ 92 (272)
++++ +|||+||+++++..|..+.+.|.+. |+|+++|+||||.|+.+. .++++++++++. .+ ..++++++||
T Consensus 10 G~g~~~ivllHG~~~~~~~w~~~~~~L~~~-~~vi~~Dl~G~G~S~~~~--~~~~~~~~~~l~----~~-~~~~~~lvGh 81 (256)
T PRK10349 10 GQGNVHLVLLHGWGLNAEVWRCIDEELSSH-FTLHLVDLPGFGRSRGFG--ALSLADMAEAVL----QQ-APDKAIWLGW 81 (256)
T ss_pred CCCCCeEEEECCCCCChhHHHHHHHHHhcC-CEEEEecCCCCCCCCCCC--CCCHHHHHHHHH----hc-CCCCeEEEEE
Confidence 4454 6999999999999999999999755 999999999999997643 257776666554 35 5689999999
Q ss_pred CcchHHHHHHHhhCccceeeeeeeeccCCCCCCCc-hhhhhhcccCCchhhhhhhhhhccccCCCccchhhhhhhHHHHh
Q 024134 93 SFGGLSVALAADKFPHKISVAIFLTAFMPDTKHQP-SYVVERFSESIPREERLDTQYSIIDESNPSRMSILFGHKFLTLK 171 (272)
Q Consensus 93 S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (272)
||||.+++.+|.++|++|+++|++++......... ........ ..+....... .......++...
T Consensus 82 S~Gg~ia~~~a~~~p~~v~~lili~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~---------~~~~~~~~~~~~ 147 (256)
T PRK10349 82 SLGGLVASQIALTHPERVQALVTVASSPCFSARDEWPGIKPDVL-----AGFQQQLSDD---------FQRTVERFLALQ 147 (256)
T ss_pred CHHHHHHHHHHHhChHhhheEEEecCccceecCCCCCcccHHHH-----HHHHHHHHhc---------hHHHHHHHHHHH
Confidence 99999999999999999999999987532111000 00000000 0000000000 000000111000
Q ss_pred hccCCC-hhH-HHHHHHhcc-CCcc--c----hHHhhhcccccccccCCceeEEEEeCCCCCccHHHHHHHHhcCCCceE
Q 024134 172 LYQLSP-PED-LELAKMLVK-PGLL--F----TDELSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNNPVNEV 242 (272)
Q Consensus 172 ~~~~~~-~~~-~~~~~~~~~-~~~~--~----~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~ 242 (272)
...... ... ......... .... . ...+...+....+..+++|+++|+|++|.++|.+..+.+.+.++++++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~i~~~~~ 227 (256)
T PRK10349 148 TMGTETARQDARALKKTVLALPMPEVDVLNGGLEILKTVDLRQPLQNVSMPFLRLYGYLDGLVPRKVVPMLDKLWPHSES 227 (256)
T ss_pred HccCchHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhCccHHHHhhcCCCeEEEecCCCccCCHHHHHHHHHhCCCCeE
Confidence 000000 000 000000000 0000 0 011112222334566799999999999999999999999999999999
Q ss_pred EEecCCCcccccCCCchHHHHHHHHHHh
Q 024134 243 MAIKGADHMAMLSKPQPLSDCFSQIAHK 270 (272)
Q Consensus 243 ~~~~~~gH~~~~~~p~~~~~~i~~fl~~ 270 (272)
++++++||++++|+|++|++.|.+|-++
T Consensus 228 ~~i~~~gH~~~~e~p~~f~~~l~~~~~~ 255 (256)
T PRK10349 228 YIFAKAAHAPFISHPAEFCHLLVALKQR 255 (256)
T ss_pred EEeCCCCCCccccCHHHHHHHHHHHhcc
Confidence 9999999999999999999999998654
No 13
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=100.00 E-value=6.5e-36 Score=234.89 Aligned_cols=252 Identities=16% Similarity=0.166 Sum_probs=156.4
Q ss_pred CCeEEEEecCCCcchhHHh-hHHHHH---hCCCeEEEEcCCCCCCCCcccccccchhhchHHHH-HHHHHhcCCCcEEEE
Q 024134 16 QKHFVLVHGSNHGAWCWYK-VKPRLE---AAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLL-EILASLSADEKVILV 90 (272)
Q Consensus 16 ~~~vv~lhG~~~~~~~~~~-~~~~l~---~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~-~~i~~l~~~~~~~lv 90 (272)
+|+|||+||++++...|.. +++.|+ +++|+|+++|+||||.|+.+....++++++++++. .+++.+ +.++++++
T Consensus 201 k~~VVLlHG~~~s~~~W~~~~~~~L~~~~~~~yrVia~Dl~G~G~S~~p~~~~ytl~~~a~~l~~~ll~~l-g~~k~~LV 279 (481)
T PLN03087 201 KEDVLFIHGFISSSAFWTETLFPNFSDAAKSTYRLFAVDLLGFGRSPKPADSLYTLREHLEMIERSVLERY-KVKSFHIV 279 (481)
T ss_pred CCeEEEECCCCccHHHHHHHHHHHHHHHhhCCCEEEEECCCCCCCCcCCCCCcCCHHHHHHHHHHHHHHHc-CCCCEEEE
Confidence 5799999999999999985 456665 36899999999999999876555589999999994 889999 88999999
Q ss_pred EeCcchHHHHHHHhhCccceeeeeeeeccCCCCCCCchh---hhhhcccC-C-ch---hhhhhhhhhccccCCC-ccchh
Q 024134 91 GHSFGGLSVALAADKFPHKISVAIFLTAFMPDTKHQPSY---VVERFSES-I-PR---EERLDTQYSIIDESNP-SRMSI 161 (272)
Q Consensus 91 G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~---~~~~~~~~-~-~~---~~~~~~~~~~~~~~~~-~~~~~ 161 (272)
||||||.+++.+|.++|++|+++|+++++.......... ........ . .. .......+........ .....
T Consensus 280 GhSmGG~iAl~~A~~~Pe~V~~LVLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 359 (481)
T PLN03087 280 AHSLGCILALALAVKHPGAVKSLTLLAPPYYPVPKGVQATQYVMRKVAPRRVWPPIAFGASVACWYEHISRTICLVICKN 359 (481)
T ss_pred EECHHHHHHHHHHHhChHhccEEEEECCCccccccchhHHHHHHHHhcccccCCccccchhHHHHHHHHHhhhhcccccc
Confidence 999999999999999999999999999753321111000 00000000 0 00 0000000000000000 00000
Q ss_pred hhhhhHHHHhhccCCChhHHHHHHHhccC--Ccc--chHHhh------hccccc-ccccCCceeEEEEeCCCCCccHHHH
Q 024134 162 LFGHKFLTLKLYQLSPPEDLELAKMLVKP--GLL--FTDELS------KANEFS-NEGYGSVKRDFVGSDKDNCIPKEFQ 230 (272)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~------~~~~~~-~~~~~~~P~l~i~g~~D~~~~~~~~ 230 (272)
......+....... .... ......... ... ....+. ....+. ....+++|+|+|+|++|.++|++..
T Consensus 360 ~~~~~~~~~l~~~~-~~~~-~l~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~l~~l~~~I~vPtLII~Ge~D~ivP~~~~ 437 (481)
T PLN03087 360 HRLWEFLTRLLTRN-RMRT-FLIEGFFCHTHNAAWHTLHNIICGSGSKLDGYLDHVRDQLKCDVAIFHGGDDELIPVECS 437 (481)
T ss_pred hHHHHHHHHHhhhh-hhhH-HHHHHHHhccchhhHHHHHHHHhchhhhhhhHHHHHHHhCCCCEEEEEECCCCCCCHHHH
Confidence 00000000000000 0000 000000000 000 000000 000011 1224689999999999999999999
Q ss_pred HHHHhcCCCceEEEecCCCccccc-CCCchHHHHHHHHHHh
Q 024134 231 QWMIQNNPVNEVMAIKGADHMAML-SKPQPLSDCFSQIAHK 270 (272)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~gH~~~~-~~p~~~~~~i~~fl~~ 270 (272)
+.+++.+|++++++++++||++++ ++|+++++.|.+|.+.
T Consensus 438 ~~la~~iP~a~l~vI~~aGH~~~v~e~p~~fa~~L~~F~~~ 478 (481)
T PLN03087 438 YAVKAKVPRARVKVIDDKDHITIVVGRQKEFARELEEIWRR 478 (481)
T ss_pred HHHHHhCCCCEEEEeCCCCCcchhhcCHHHHHHHHHHHhhc
Confidence 999999999999999999999886 9999999999999864
No 14
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=100.00 E-value=1.7e-35 Score=223.75 Aligned_cols=246 Identities=13% Similarity=0.132 Sum_probs=160.4
Q ss_pred CCCeEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcCCCcEEEEEeCc
Q 024134 15 KQKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSADEKVILVGHSF 94 (272)
Q Consensus 15 ~~~~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~lvG~S~ 94 (272)
++|+|||+||++++...|..+.+.|++ +|+|+++|+||||.|+.+....++++++++++.++++++ +.++++++||||
T Consensus 27 ~~~~vv~~hG~~~~~~~~~~~~~~l~~-~~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~l~~~i~~~-~~~~~~lvG~S~ 104 (278)
T TIGR03056 27 AGPLLLLLHGTGASTHSWRDLMPPLAR-SFRVVAPDLPGHGFTRAPFRFRFTLPSMAEDLSALCAAE-GLSPDGVIGHSA 104 (278)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhh-CcEEEeecCCCCCCCCCccccCCCHHHHHHHHHHHHHHc-CCCCceEEEECc
Confidence 468999999999999999999999975 599999999999999876654579999999999999998 788999999999
Q ss_pred chHHHHHHHhhCccceeeeeeeeccCCCCCCCchhhhhhcccCCchhhhhhhhhhccccCCCccchhhhhhhHHHHhhcc
Q 024134 95 GGLSVALAADKFPHKISVAIFLTAFMPDTKHQPSYVVERFSESIPREERLDTQYSIIDESNPSRMSILFGHKFLTLKLYQ 174 (272)
Q Consensus 95 Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (272)
||.+++.+|.++|++++++|++++........................+.......... ... .. ....... ..
T Consensus 105 Gg~~a~~~a~~~p~~v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~-~~~~~~~-~~ 177 (278)
T TIGR03056 105 GAAIALRLALDGPVTPRMVVGINAALMPFEGMAGTLFPYMARVLACNPFTPPMMSRGAA-DQQ----RV-ERLIRDT-GS 177 (278)
T ss_pred cHHHHHHHHHhCCcccceEEEEcCcccccccccccccchhhHhhhhcccchHHHHhhcc-cCc----ch-hHHhhcc-cc
Confidence 99999999999999999999998754321110000000000000000000000000000 000 00 0000000 00
Q ss_pred CCChhHHHHHHHhccCCcc---chHHhh---hcccccccccCCceeEEEEeCCCCCccHHHHHHHHhcCCCceEEEecCC
Q 024134 175 LSPPEDLELAKMLVKPGLL---FTDELS---KANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNNPVNEVMAIKGA 248 (272)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~---~~~~~~---~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (272)
................... ....+. ........+.+++|+++|+|++|..+|++..+.+.+.+++++++.++++
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~g~~D~~vp~~~~~~~~~~~~~~~~~~~~~~ 257 (278)
T TIGR03056 178 LLDKAGMTYYGRLIRSPAHVDGALSMMAQWDLAPLNRDLPRITIPLHLIAGEEDKAVPPDESKRAATRVPTATLHVVPGG 257 (278)
T ss_pred ccccchhhHHHHhhcCchhhhHHHHHhhcccccchhhhcccCCCCEEEEEeCCCcccCHHHHHHHHHhccCCeEEEECCC
Confidence 0000000000000000000 000000 0001123455789999999999999999999999999999999999999
Q ss_pred CcccccCCCchHHHHHHHHHH
Q 024134 249 DHMAMLSKPQPLSDCFSQIAH 269 (272)
Q Consensus 249 gH~~~~~~p~~~~~~i~~fl~ 269 (272)
||++++|+|+++++.|.+|++
T Consensus 258 gH~~~~e~p~~~~~~i~~f~~ 278 (278)
T TIGR03056 258 GHLVHEEQADGVVGLILQAAE 278 (278)
T ss_pred CCcccccCHHHHHHHHHHHhC
Confidence 999999999999999999984
No 15
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=100.00 E-value=1.6e-35 Score=228.51 Aligned_cols=250 Identities=17% Similarity=0.153 Sum_probs=160.2
Q ss_pred cCCCeEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCCCCCCCCcccc---cccchhhchHHHHHHHHHhcCCCcEEEE
Q 024134 14 KKQKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQ---DVRSFYEYNEPLLEILASLSADEKVILV 90 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~---~~~~~~~~~~~~~~~i~~l~~~~~~~lv 90 (272)
+++++|||+||++++...|+.+++.|++ +|+|+++|+||||.|+.+.. ..++++++++++.++++++ +.++++++
T Consensus 125 ~~~~~ivllHG~~~~~~~w~~~~~~L~~-~~~Via~DlpG~G~S~~p~~~~~~~ys~~~~a~~l~~~i~~l-~~~~~~Lv 202 (383)
T PLN03084 125 NNNPPVLLIHGFPSQAYSYRKVLPVLSK-NYHAIAFDWLGFGFSDKPQPGYGFNYTLDEYVSSLESLIDEL-KSDKVSLV 202 (383)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhc-CCEEEEECCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHh-CCCCceEE
Confidence 3568999999999999999999999974 69999999999999987653 2479999999999999999 88999999
Q ss_pred EeCcchHHHHHHHhhCccceeeeeeeeccCCCCCCCchhhhhhcccCCchhhhhh-hhhhccccCCCccchhhhhhhHHH
Q 024134 91 GHSFGGLSVALAADKFPHKISVAIFLTAFMPDTKHQPSYVVERFSESIPREERLD-TQYSIIDESNPSRMSILFGHKFLT 169 (272)
Q Consensus 91 G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 169 (272)
|||+||.+++.+|.++|++|+++|++++...............+..... ..+.. ........................
T Consensus 203 G~s~GG~ia~~~a~~~P~~v~~lILi~~~~~~~~~~~p~~l~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 281 (383)
T PLN03084 203 VQGYFSPPVVKYASAHPDKIKKLILLNPPLTKEHAKLPSTLSEFSNFLL-GEIFSQDPLRASDKALTSCGPYAMKEDDAM 281 (383)
T ss_pred EECHHHHHHHHHHHhChHhhcEEEEECCCCccccccchHHHHHHHHHHh-hhhhhcchHHHHhhhhcccCccCCCHHHHH
Confidence 9999999999999999999999999998743221111111111100000 00000 000000000000000000011111
Q ss_pred HhhccCCChh----HHH-HHHHhccCCccchHHhhhcccccccccCCceeEEEEeCCCCCccHHHHHHHHhcCCCceEEE
Q 024134 170 LKLYQLSPPE----DLE-LAKMLVKPGLLFTDELSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNNPVNEVMA 244 (272)
Q Consensus 170 ~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~ 244 (272)
.......... ... ....+..........+... .....+++|+++|+|++|.+++.+..+.+.+. +++++++
T Consensus 282 ~~~~~~~~~~~~~~~l~~~~r~~~~~l~~~~~~l~~~---l~~~~i~vPvLiI~G~~D~~v~~~~~~~~a~~-~~a~l~v 357 (383)
T PLN03084 282 VYRRPYLTSGSSGFALNAISRSMKKELKKYIEEMRSI---LTDKNWKTPITVCWGLRDRWLNYDGVEDFCKS-SQHKLIE 357 (383)
T ss_pred HHhccccCCcchHHHHHHHHHHhhcccchhhHHHHhh---hccccCCCCEEEEeeCCCCCcCHHHHHHHHHh-cCCeEEE
Confidence 1100000000 000 0111110000111111110 01134689999999999999999988888887 5889999
Q ss_pred ecCCCcccccCCCchHHHHHHHHHHh
Q 024134 245 IKGADHMAMLSKPQPLSDCFSQIAHK 270 (272)
Q Consensus 245 ~~~~gH~~~~~~p~~~~~~i~~fl~~ 270 (272)
++++||+++.|+|+++++.|.+|+.+
T Consensus 358 Ip~aGH~~~~E~Pe~v~~~I~~Fl~~ 383 (383)
T PLN03084 358 LPMAGHHVQEDCGEELGGIISGILSK 383 (383)
T ss_pred ECCCCCCcchhCHHHHHHHHHHHhhC
Confidence 99999999999999999999999863
No 16
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=100.00 E-value=1.5e-35 Score=229.74 Aligned_cols=241 Identities=14% Similarity=0.127 Sum_probs=155.8
Q ss_pred CCCeEEEEecCCCcchh-HHhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhc-----CCCcEE
Q 024134 15 KQKHFVLVHGSNHGAWC-WYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLS-----ADEKVI 88 (272)
Q Consensus 15 ~~~~vv~lhG~~~~~~~-~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~-----~~~~~~ 88 (272)
.+++|||+||++++... |..+++.|++.||+|+++|+||||.|+.+.....+++++++|+.++++.+. ...+++
T Consensus 86 ~~~~iv~lHG~~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~~dv~~~l~~l~~~~~~~~~~~~ 165 (349)
T PLN02385 86 PKAAVCFCHGYGDTCTFFFEGIARKIASSGYGVFAMDYPGFGLSEGLHGYIPSFDDLVDDVIEHYSKIKGNPEFRGLPSF 165 (349)
T ss_pred CCeEEEEECCCCCccchHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHhccccCCCCEE
Confidence 45789999999988764 688999999889999999999999998765444588999999999998872 123799
Q ss_pred EEEeCcchHHHHHHHhhCccceeeeeeeeccCCCCCCC-chhhhhhcccCCchhhhhhhhhhcc-ccCCCccchhhhhhh
Q 024134 89 LVGHSFGGLSVALAADKFPHKISVAIFLTAFMPDTKHQ-PSYVVERFSESIPREERLDTQYSII-DESNPSRMSILFGHK 166 (272)
Q Consensus 89 lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 166 (272)
|+||||||++++.++.++|++++++|+++|........ .......+.. ......... ..+........+...
T Consensus 166 LvGhSmGG~val~~a~~~p~~v~glVLi~p~~~~~~~~~~~~~~~~~~~------~~~~~~p~~~~~~~~~~~~~~~~~~ 239 (349)
T PLN02385 166 LFGQSMGGAVALKVHLKQPNAWDGAILVAPMCKIADDVVPPPLVLQILI------LLANLLPKAKLVPQKDLAELAFRDL 239 (349)
T ss_pred EEEeccchHHHHHHHHhCcchhhheeEecccccccccccCchHHHHHHH------HHHHHCCCceecCCCccccccccCH
Confidence 99999999999999999999999999999864321110 0000000000 000000000 000000000000000
Q ss_pred ---HHHHh-hccCCChhHHHHHHHhccCCccchHHhhh-cccccccccCCceeEEEEeCCCCCccHHHHHHHHhcC--CC
Q 024134 167 ---FLTLK-LYQLSPPEDLELAKMLVKPGLLFTDELSK-ANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNN--PV 239 (272)
Q Consensus 167 ---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~--~~ 239 (272)
..... ............. ...+.. .........+++|+|+|+|++|.++|++.++.+.+.+ ++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~----------~~~l~~~~~~~~~l~~i~~P~Lii~G~~D~vv~~~~~~~l~~~~~~~~ 309 (349)
T PLN02385 240 KKRKMAEYNVIAYKDKPRLRTA----------VELLRTTQEIEMQLEEVSLPLLILHGEADKVTDPSVSKFLYEKASSSD 309 (349)
T ss_pred HHHHHhhcCcceeCCCcchHHH----------HHHHHHHHHHHHhcccCCCCEEEEEeCCCCccChHHHHHHHHHcCCCC
Confidence 00000 0000000000000 001110 0111234457999999999999999999999998877 56
Q ss_pred ceEEEecCCCcccccCCCch----HHHHHHHHHHhh
Q 024134 240 NEVMAIKGADHMAMLSKPQP----LSDCFSQIAHKY 271 (272)
Q Consensus 240 ~~~~~~~~~gH~~~~~~p~~----~~~~i~~fl~~~ 271 (272)
+++++++++||+++.|+|++ +.+.|.+||++.
T Consensus 310 ~~l~~i~~~gH~l~~e~p~~~~~~v~~~i~~wL~~~ 345 (349)
T PLN02385 310 KKLKLYEDAYHSILEGEPDEMIFQVLDDIISWLDSH 345 (349)
T ss_pred ceEEEeCCCeeecccCCChhhHHHHHHHHHHHHHHh
Confidence 89999999999999999987 788899999864
No 17
>PLN02578 hydrolase
Probab=100.00 E-value=1e-35 Score=230.76 Aligned_cols=249 Identities=16% Similarity=0.161 Sum_probs=159.7
Q ss_pred cCCCeEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcCCCcEEEEEeC
Q 024134 14 KKQKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSADEKVILVGHS 93 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~lvG~S 93 (272)
+++++|||+||++++...|..+++.|++ +|+|+++|+||||.|+.+... ++.+++++++.++++.+ ..++++++|||
T Consensus 84 g~g~~vvliHG~~~~~~~w~~~~~~l~~-~~~v~~~D~~G~G~S~~~~~~-~~~~~~a~~l~~~i~~~-~~~~~~lvG~S 160 (354)
T PLN02578 84 GEGLPIVLIHGFGASAFHWRYNIPELAK-KYKVYALDLLGFGWSDKALIE-YDAMVWRDQVADFVKEV-VKEPAVLVGNS 160 (354)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhc-CCEEEEECCCCCCCCCCcccc-cCHHHHHHHHHHHHHHh-ccCCeEEEEEC
Confidence 5678999999999999999999999975 599999999999999876543 78999999999999999 78999999999
Q ss_pred cchHHHHHHHhhCccceeeeeeeeccCCCCCCCchhh-----hhhcccC-C--chhhhhhhhhhccc-cCCCccchhhhh
Q 024134 94 FGGLSVALAADKFPHKISVAIFLTAFMPDTKHQPSYV-----VERFSES-I--PREERLDTQYSIID-ESNPSRMSILFG 164 (272)
Q Consensus 94 ~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~-----~~~~~~~-~--~~~~~~~~~~~~~~-~~~~~~~~~~~~ 164 (272)
+||.+++.+|.++|++|+++|++++............ ....... . .............. ..... ....
T Consensus 161 ~Gg~ia~~~A~~~p~~v~~lvLv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~- 237 (354)
T PLN02578 161 LGGFTALSTAVGYPELVAGVALLNSAGQFGSESREKEEAIVVEETVLTRFVVKPLKEWFQRVVLGFLFWQAKQ--PSRI- 237 (354)
T ss_pred HHHHHHHHHHHhChHhcceEEEECCCccccccccccccccccccchhhHHHhHHHHHHHHHHHHHHHHHHhcC--HHHH-
Confidence 9999999999999999999999987532211110000 0000000 0 00000000000000 00000 0000
Q ss_pred hhHHHHhhccCCChhHH--HHH-HHhccCC--ccchHHhh-------hcccccccccCCceeEEEEeCCCCCccHHHHHH
Q 024134 165 HKFLTLKLYQLSPPEDL--ELA-KMLVKPG--LLFTDELS-------KANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQW 232 (272)
Q Consensus 165 ~~~~~~~~~~~~~~~~~--~~~-~~~~~~~--~~~~~~~~-------~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~ 232 (272)
.......+......+.. ... ....... ..+...+. ..........+++|+++|+|++|.++|.+..+.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D~~v~~~~~~~ 317 (354)
T PLN02578 238 ESVLKSVYKDKSNVDDYLVESITEPAADPNAGEVYYRLMSRFLFNQSRYTLDSLLSKLSCPLLLLWGDLDPWVGPAKAEK 317 (354)
T ss_pred HHHHHHhcCCcccCCHHHHHHHHhcccCCchHHHHHHHHHHHhcCCCCCCHHHHhhcCCCCEEEEEeCCCCCCCHHHHHH
Confidence 00000000000000000 000 0000000 00000000 011112245679999999999999999999999
Q ss_pred HHhcCCCceEEEecCCCcccccCCCchHHHHHHHHHH
Q 024134 233 MIQNNPVNEVMAIKGADHMAMLSKPQPLSDCFSQIAH 269 (272)
Q Consensus 233 ~~~~~~~~~~~~~~~~gH~~~~~~p~~~~~~i~~fl~ 269 (272)
+.+.+|+++++++ ++||+++.|+|+++++.|.+|++
T Consensus 318 l~~~~p~a~l~~i-~~GH~~~~e~p~~~~~~I~~fl~ 353 (354)
T PLN02578 318 IKAFYPDTTLVNL-QAGHCPHDEVPEQVNKALLEWLS 353 (354)
T ss_pred HHHhCCCCEEEEe-CCCCCccccCHHHHHHHHHHHHh
Confidence 9999999999999 49999999999999999999986
No 18
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=100.00 E-value=3.3e-35 Score=219.69 Aligned_cols=242 Identities=14% Similarity=0.179 Sum_probs=161.8
Q ss_pred cCCCeEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcCCCcEEEEEeC
Q 024134 14 KKQKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSADEKVILVGHS 93 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~lvG~S 93 (272)
.++|+|||+||+++++..|..+++.|. ++|+|+++|+||||.|..+....++++++++++.++++.+ +.++++++|||
T Consensus 11 ~~~~~iv~lhG~~~~~~~~~~~~~~l~-~~~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~l~G~S 88 (257)
T TIGR03611 11 ADAPVVVLSSGLGGSGSYWAPQLDVLT-QRFHVVTYDHRGTGRSPGELPPGYSIAHMADDVLQLLDAL-NIERFHFVGHA 88 (257)
T ss_pred CCCCEEEEEcCCCcchhHHHHHHHHHH-hccEEEEEcCCCCCCCCCCCcccCCHHHHHHHHHHHHHHh-CCCcEEEEEec
Confidence 457899999999999999999999886 5699999999999999876555579999999999999999 88999999999
Q ss_pred cchHHHHHHHhhCccceeeeeeeeccCCCCCCCchhh--hhhcccCCchhhhhhhhhhccccCCCccchhhhhhhHHHHh
Q 024134 94 FGGLSVALAADKFPHKISVAIFLTAFMPDTKHQPSYV--VERFSESIPREERLDTQYSIIDESNPSRMSILFGHKFLTLK 171 (272)
Q Consensus 94 ~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (272)
|||.+++.++.++|++|+++|++++............ ...+........+..... .......++...
T Consensus 89 ~Gg~~a~~~a~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~ 157 (257)
T TIGR03611 89 LGGLIGLQLALRYPERLLSLVLINAWSRPDPHTRRCFDVRIALLQHAGPEAYVHAQA-----------LFLYPADWISEN 157 (257)
T ss_pred hhHHHHHHHHHHChHHhHHheeecCCCCCChhHHHHHHHHHHHHhccCcchhhhhhh-----------hhhccccHhhcc
Confidence 9999999999999999999999987543211100000 000000000000000000 000000000000
Q ss_pred hccCCChhHHHHHHHhccCCccc---hHHhhhcccccccccCCceeEEEEeCCCCCccHHHHHHHHhcCCCceEEEecCC
Q 024134 172 LYQLSPPEDLELAKMLVKPGLLF---TDELSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNNPVNEVMAIKGA 248 (272)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (272)
..... ........ ........ ...+...+.......+++|+++++|++|.++|++.++.+.+.+++++++.++++
T Consensus 158 ~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (257)
T TIGR03611 158 AARLA-ADEAHALA-HFPGKANVLRRINALEAFDVSARLDRIQHPVLLIANRDDMLVPYTQSLRLAAALPNAQLKLLPYG 235 (257)
T ss_pred chhhh-hhhhhccc-ccCccHHHHHHHHHHHcCCcHHHhcccCccEEEEecCcCcccCHHHHHHHHHhcCCceEEEECCC
Confidence 00000 00000000 00000000 011111112233456699999999999999999999999999999999999999
Q ss_pred CcccccCCCchHHHHHHHHHHh
Q 024134 249 DHMAMLSKPQPLSDCFSQIAHK 270 (272)
Q Consensus 249 gH~~~~~~p~~~~~~i~~fl~~ 270 (272)
||++++++|+++++.|.+||++
T Consensus 236 gH~~~~~~~~~~~~~i~~fl~~ 257 (257)
T TIGR03611 236 GHASNVTDPETFNRALLDFLKT 257 (257)
T ss_pred CCCccccCHHHHHHHHHHHhcC
Confidence 9999999999999999999863
No 19
>KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=100.00 E-value=2.6e-35 Score=222.59 Aligned_cols=249 Identities=23% Similarity=0.273 Sum_probs=162.7
Q ss_pred cCCCeEEEEecCCCcchhHHhhHHHHHhC-CCeEEEEcCCCCC-CCCcccccccchhhchHHHHHHHHHhcCCCcEEEEE
Q 024134 14 KKQKHFVLVHGSNHGAWCWYKVKPRLEAA-GHRVTAMDLAASG-INMKKIQDVRSFYEYNEPLLEILASLSADEKVILVG 91 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~~~~~~~~l~~~-g~~v~~~d~~G~G-~s~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~lvG 91 (272)
..+++||++||++++...|+.+++.|.+. |++|+++|++|+| .|..+....++..++++.+..+.... ...+++++|
T Consensus 56 ~~~~pvlllHGF~~~~~~w~~~~~~L~~~~~~~v~aiDl~G~g~~s~~~~~~~y~~~~~v~~i~~~~~~~-~~~~~~lvg 134 (326)
T KOG1454|consen 56 KDKPPVLLLHGFGASSFSWRRVVPLLSKAKGLRVLAIDLPGHGYSSPLPRGPLYTLRELVELIRRFVKEV-FVEPVSLVG 134 (326)
T ss_pred CCCCcEEEeccccCCcccHhhhccccccccceEEEEEecCCCCcCCCCCCCCceehhHHHHHHHHHHHhh-cCcceEEEE
Confidence 36899999999999999999999999765 4999999999999 56666666689999999999999999 788899999
Q ss_pred eCcchHHHHHHHhhCccceeeee---eeeccCCCCCCCchhhhhhcccCCchhh-hhhhhhhccccCCCccchhhhhhhH
Q 024134 92 HSFGGLSVALAADKFPHKISVAI---FLTAFMPDTKHQPSYVVERFSESIPREE-RLDTQYSIIDESNPSRMSILFGHKF 167 (272)
Q Consensus 92 ~S~Gg~~a~~~a~~~p~~v~~lv---l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (272)
||+||.+|+.+|+.+|+.|+++| ++++........................ +........ ...+....
T Consensus 135 hS~Gg~va~~~Aa~~P~~V~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~--------~~~~~~~~ 206 (326)
T KOG1454|consen 135 HSLGGIVALKAAAYYPETVDSLVLLDLLGPPVYSTPKGIKGLRRLLDKFLSALELLIPLSLTEP--------VRLVSEGL 206 (326)
T ss_pred eCcHHHHHHHHHHhCcccccceeeecccccccccCCcchhHHHHhhhhhccHhhhcCccccccc--------hhheeHhh
Confidence 99999999999999999999999 5555433222221111111110000000 000000000 00000000
Q ss_pred HHHhhccC-CChhHHHHHHHhccCC----------ccchHHhhh--cccccccccCC-ceeEEEEeCCCCCccHHHHHHH
Q 024134 168 LTLKLYQL-SPPEDLELAKMLVKPG----------LLFTDELSK--ANEFSNEGYGS-VKRDFVGSDKDNCIPKEFQQWM 233 (272)
Q Consensus 168 ~~~~~~~~-~~~~~~~~~~~~~~~~----------~~~~~~~~~--~~~~~~~~~~~-~P~l~i~g~~D~~~~~~~~~~~ 233 (272)
........ ................ ..+...... .......+.+. ||+++++|++|+++|.+.+..+
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~pvlii~G~~D~~~p~~~~~~~ 286 (326)
T KOG1454|consen 207 LRCLKVVYTDPSRLLEKLLHLLSRPVKEHFHRDARLSLFLELLGFDENLLSLIKKIWKCPVLIIWGDKDQIVPLELAEEL 286 (326)
T ss_pred hcceeeeccccccchhhhhhheecccccchhhhheeeEEEeccCccchHHHhhccccCCceEEEEcCcCCccCHHHHHHH
Confidence 00000000 0000000000000000 000000010 11222233444 9999999999999999999999
Q ss_pred HhcCCCceEEEecCCCcccccCCCchHHHHHHHHHHhh
Q 024134 234 IQNNPVNEVMAIKGADHMAMLSKPQPLSDCFSQIAHKY 271 (272)
Q Consensus 234 ~~~~~~~~~~~~~~~gH~~~~~~p~~~~~~i~~fl~~~ 271 (272)
.+.+|++++++++++||.+++|.|+++++.|..|+.+.
T Consensus 287 ~~~~pn~~~~~I~~~gH~~h~e~Pe~~~~~i~~Fi~~~ 324 (326)
T KOG1454|consen 287 KKKLPNAELVEIPGAGHLPHLERPEEVAALLRSFIARL 324 (326)
T ss_pred HhhCCCceEEEeCCCCcccccCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999864
No 20
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=100.00 E-value=2.2e-34 Score=213.24 Aligned_cols=231 Identities=14% Similarity=0.088 Sum_probs=146.3
Q ss_pred CCeEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcCCCcEEEEEeCcc
Q 024134 16 QKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSADEKVILVGHSFG 95 (272)
Q Consensus 16 ~~~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~lvG~S~G 95 (272)
+|+|||+||+++++..|..+.+.| + +|+|+++|+||||.|+.+.. .+++++++++.++++++ +.++++++|||||
T Consensus 2 ~p~vvllHG~~~~~~~w~~~~~~l-~-~~~vi~~D~~G~G~S~~~~~--~~~~~~~~~l~~~l~~~-~~~~~~lvG~S~G 76 (242)
T PRK11126 2 LPWLVFLHGLLGSGQDWQPVGEAL-P-DYPRLYIDLPGHGGSAAISV--DGFADVSRLLSQTLQSY-NILPYWLVGYSLG 76 (242)
T ss_pred CCEEEEECCCCCChHHHHHHHHHc-C-CCCEEEecCCCCCCCCCccc--cCHHHHHHHHHHHHHHc-CCCCeEEEEECHH
Confidence 578999999999999999999988 3 59999999999999987653 48999999999999999 8899999999999
Q ss_pred hHHHHHHHhhCccc-eeeeeeeeccCCCCCCCchhhhhhcccCCchhhhhhhhhhccccCCCccchhhhhhhHHHHhhcc
Q 024134 96 GLSVALAADKFPHK-ISVAIFLTAFMPDTKHQPSYVVERFSESIPREERLDTQYSIIDESNPSRMSILFGHKFLTLKLYQ 174 (272)
Q Consensus 96 g~~a~~~a~~~p~~-v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (272)
|.+++.+|.++|+. |+++|++++....... ........ ....|... +.. .. ....+ ..++......
T Consensus 77 g~va~~~a~~~~~~~v~~lvl~~~~~~~~~~--~~~~~~~~---~~~~~~~~-~~~-----~~-~~~~~-~~~~~~~~~~ 143 (242)
T PRK11126 77 GRIAMYYACQGLAGGLCGLIVEGGNPGLQNA--EERQARWQ---NDRQWAQR-FRQ-----EP-LEQVL-ADWYQQPVFA 143 (242)
T ss_pred HHHHHHHHHhCCcccccEEEEeCCCCCCCCH--HHHHHHHh---hhHHHHHH-hcc-----Cc-HHHHH-HHHHhcchhh
Confidence 99999999999764 9999998765321111 00000000 00011100 000 00 00000 0000000000
Q ss_pred CCCh-hHHHHHHHhccCCccc-hHHh------hhcccccccccCCceeEEEEeCCCCCccHHHHHHHHhcCCCceEEEec
Q 024134 175 LSPP-EDLELAKMLVKPGLLF-TDEL------SKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNNPVNEVMAIK 246 (272)
Q Consensus 175 ~~~~-~~~~~~~~~~~~~~~~-~~~~------~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~ 246 (272)
.... ................ ...+ ...........+++|+++|+|++|..+. .+.+. .++++++++
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~-----~~~~~-~~~~~~~i~ 217 (242)
T PRK11126 144 SLNAEQRQQLVAKRSNNNGAAVAAMLEATSLAKQPDLRPALQALTFPFYYLCGERDSKFQ-----ALAQQ-LALPLHVIP 217 (242)
T ss_pred ccCccHHHHHHHhcccCCHHHHHHHHHhcCcccCCcHHHHhhccCCCeEEEEeCCcchHH-----HHHHH-hcCeEEEeC
Confidence 0000 0000000000000000 0000 0011122345679999999999998553 22232 378999999
Q ss_pred CCCcccccCCCchHHHHHHHHHHh
Q 024134 247 GADHMAMLSKPQPLSDCFSQIAHK 270 (272)
Q Consensus 247 ~~gH~~~~~~p~~~~~~i~~fl~~ 270 (272)
++||++++|+|+++++.|.+|+++
T Consensus 218 ~~gH~~~~e~p~~~~~~i~~fl~~ 241 (242)
T PRK11126 218 NAGHNAHRENPAAFAASLAQILRL 241 (242)
T ss_pred CCCCchhhhChHHHHHHHHHHHhh
Confidence 999999999999999999999975
No 21
>PRK06489 hypothetical protein; Provisional
Probab=100.00 E-value=3e-34 Score=223.15 Aligned_cols=249 Identities=12% Similarity=0.115 Sum_probs=152.1
Q ss_pred CCeEEEEecCCCcchhHH--hhHHHH-------HhCCCeEEEEcCCCCCCCCccccc------ccchhhchHHHHHHH-H
Q 024134 16 QKHFVLVHGSNHGAWCWY--KVKPRL-------EAAGHRVTAMDLAASGINMKKIQD------VRSFYEYNEPLLEIL-A 79 (272)
Q Consensus 16 ~~~vv~lhG~~~~~~~~~--~~~~~l-------~~~g~~v~~~d~~G~G~s~~~~~~------~~~~~~~~~~~~~~i-~ 79 (272)
+|+|||+||++++...|. .+.+.| ..++|+|+++|+||||.|+.+... .++++++++++.+++ +
T Consensus 69 gpplvllHG~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~Via~Dl~GhG~S~~p~~~~~~~~~~~~~~~~a~~~~~~l~~ 148 (360)
T PRK06489 69 DNAVLVLHGTGGSGKSFLSPTFAGELFGPGQPLDASKYFIILPDGIGHGKSSKPSDGLRAAFPRYDYDDMVEAQYRLVTE 148 (360)
T ss_pred CCeEEEeCCCCCchhhhccchhHHHhcCCCCcccccCCEEEEeCCCCCCCCCCCCcCCCCCCCcccHHHHHHHHHHHHHH
Confidence 689999999999988885 555554 135699999999999999865431 378899999988865 7
Q ss_pred HhcCCCcEE-EEEeCcchHHHHHHHhhCccceeeeeeeeccCCCCCCCchhhhhhcccCCchhhhhhh-hhhccccCCCc
Q 024134 80 SLSADEKVI-LVGHSFGGLSVALAADKFPHKISVAIFLTAFMPDTKHQPSYVVERFSESIPREERLDT-QYSIIDESNPS 157 (272)
Q Consensus 80 ~l~~~~~~~-lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 157 (272)
++ +.++++ ++||||||++|+.+|.++|++|+++|++++........ ......... ...... .+.........
T Consensus 149 ~l-gi~~~~~lvG~SmGG~vAl~~A~~~P~~V~~LVLi~s~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 222 (360)
T PRK06489 149 GL-GVKHLRLILGTSMGGMHAWMWGEKYPDFMDALMPMASQPTEMSGR-NWMWRRMLI----ESIRNDPAWNNGNYTTQP 222 (360)
T ss_pred hc-CCCceeEEEEECHHHHHHHHHHHhCchhhheeeeeccCcccccHH-HHHHHHHHH----HHHHhCCCCCCCCCCCCH
Confidence 78 888885 89999999999999999999999999998753211110 000000000 000000 00000000000
Q ss_pred cchhhhhhhH--HH-----HhhccCCChh-HHHHHHHhc----cC-Cccch---HHhhhcccccccccCCceeEEEEeCC
Q 024134 158 RMSILFGHKF--LT-----LKLYQLSPPE-DLELAKMLV----KP-GLLFT---DELSKANEFSNEGYGSVKRDFVGSDK 221 (272)
Q Consensus 158 ~~~~~~~~~~--~~-----~~~~~~~~~~-~~~~~~~~~----~~-~~~~~---~~~~~~~~~~~~~~~~~P~l~i~g~~ 221 (272)
.......... .. .......... ......... .. ...+. ......+....+..+++|+|+|+|++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~L~~I~~PvLvI~G~~ 302 (360)
T PRK06489 223 PSLKRANPMFAIATSGGTLAYQAQAPTRAAADKLVDERLAAPVTADANDFLYQWDSSRDYNPSPDLEKIKAPVLAINSAD 302 (360)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHhcCChHHHHHHHHHHHHhhhhcCHHHHHHHHHHhhccChHHHHHhCCCCEEEEecCC
Confidence 0000000000 00 0000000000 000000000 00 00000 01111122334667899999999999
Q ss_pred CCCccHHHH--HHHHhcCCCceEEEecCC----CcccccCCCchHHHHHHHHHHhh
Q 024134 222 DNCIPKEFQ--QWMIQNNPVNEVMAIKGA----DHMAMLSKPQPLSDCFSQIAHKY 271 (272)
Q Consensus 222 D~~~~~~~~--~~~~~~~~~~~~~~~~~~----gH~~~~~~p~~~~~~i~~fl~~~ 271 (272)
|.++|++.. +.+++.+|++++++++++ ||+++ ++|+++++.|.+||+++
T Consensus 303 D~~~p~~~~~~~~la~~ip~a~l~~i~~a~~~~GH~~~-e~P~~~~~~i~~FL~~~ 357 (360)
T PRK06489 303 DERNPPETGVMEAALKRVKHGRLVLIPASPETRGHGTT-GSAKFWKAYLAEFLAQV 357 (360)
T ss_pred CcccChhhHHHHHHHHhCcCCeEEEECCCCCCCCcccc-cCHHHHHHHHHHHHHhc
Confidence 999998865 789999999999999986 99997 89999999999999864
No 22
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=100.00 E-value=3.6e-34 Score=213.21 Aligned_cols=239 Identities=16% Similarity=0.194 Sum_probs=158.4
Q ss_pred CCCeEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcCCCcEEEEEeCc
Q 024134 15 KQKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSADEKVILVGHSF 94 (272)
Q Consensus 15 ~~~~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~lvG~S~ 94 (272)
++|+|||+||++.+...|..+++.|. +||+|+++|+||||.|+.+.. .++++++++++.++++.+ +.++++++|||+
T Consensus 12 ~~~~li~~hg~~~~~~~~~~~~~~l~-~~~~v~~~d~~G~G~s~~~~~-~~~~~~~~~~~~~~i~~~-~~~~v~liG~S~ 88 (251)
T TIGR02427 12 GAPVLVFINSLGTDLRMWDPVLPALT-PDFRVLRYDKRGHGLSDAPEG-PYSIEDLADDVLALLDHL-GIERAVFCGLSL 88 (251)
T ss_pred CCCeEEEEcCcccchhhHHHHHHHhh-cccEEEEecCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHh-CCCceEEEEeCc
Confidence 56899999999999999999999996 679999999999999976543 469999999999999999 788999999999
Q ss_pred chHHHHHHHhhCccceeeeeeeeccCCCCCCCch-hhhhhcccCCchhhhhhhhhhccccCCCccchhhhhhhHHHHhhc
Q 024134 95 GGLSVALAADKFPHKISVAIFLTAFMPDTKHQPS-YVVERFSESIPREERLDTQYSIIDESNPSRMSILFGHKFLTLKLY 173 (272)
Q Consensus 95 Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (272)
||.+++.+|.++|++++++|++++.......... ........ ..................... ..............
T Consensus 89 Gg~~a~~~a~~~p~~v~~li~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 166 (251)
T TIGR02427 89 GGLIAQGLAARRPDRVRALVLSNTAAKIGTPESWNARIAAVRA-EGLAALADAVLERWFTPGFRE-AHPARLDLYRNMLV 166 (251)
T ss_pred hHHHHHHHHHHCHHHhHHHhhccCccccCchhhHHHHHhhhhh-ccHHHHHHHHHHHHccccccc-CChHHHHHHHHHHH
Confidence 9999999999999999999999875332111100 00000000 000000000000000000000 00000000000000
Q ss_pred cCCChhHHHHHHHhccCCccchHHhhhcccccccccCCceeEEEEeCCCCCccHHHHHHHHhcCCCceEEEecCCCcccc
Q 024134 174 QLSPPEDLELAKMLVKPGLLFTDELSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNNPVNEVMAIKGADHMAM 253 (272)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~ 253 (272)
.. ...... .....+...........+++|+++++|++|.++|.+..+.+.+.+++.+++.++++||+++
T Consensus 167 ~~-~~~~~~----------~~~~~~~~~~~~~~~~~~~~Pvlii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~ 235 (251)
T TIGR02427 167 RQ-PPDGYA----------GCCAAIRDADFRDRLGAIAVPTLCIAGDQDGSTPPELVREIADLVPGARFAEIRGAGHIPC 235 (251)
T ss_pred hc-CHHHHH----------HHHHHHhcccHHHHhhhcCCCeEEEEeccCCcCChHHHHHHHHhCCCceEEEECCCCCccc
Confidence 00 000000 0001111111122345568999999999999999999999999999999999999999999
Q ss_pred cCCCchHHHHHHHHHH
Q 024134 254 LSKPQPLSDCFSQIAH 269 (272)
Q Consensus 254 ~~~p~~~~~~i~~fl~ 269 (272)
+++|+++.+.|.+|++
T Consensus 236 ~~~p~~~~~~i~~fl~ 251 (251)
T TIGR02427 236 VEQPEAFNAALRDFLR 251 (251)
T ss_pred ccChHHHHHHHHHHhC
Confidence 9999999999999974
No 23
>PHA02857 monoglyceride lipase; Provisional
Probab=100.00 E-value=5.4e-34 Score=215.01 Aligned_cols=239 Identities=12% Similarity=0.082 Sum_probs=152.2
Q ss_pred cCCCeEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHh---cCCCcEEEE
Q 024134 14 KKQKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASL---SADEKVILV 90 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l---~~~~~~~lv 90 (272)
..++.|+++||+++++..|..+++.|+++||+|+++|+||||.|+.......++.++++|+.+.++.+ ....+++++
T Consensus 23 ~~~~~v~llHG~~~~~~~~~~~~~~l~~~g~~via~D~~G~G~S~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~lv 102 (276)
T PHA02857 23 YPKALVFISHGAGEHSGRYEELAENISSLGILVFSHDHIGHGRSNGEKMMIDDFGVYVRDVVQHVVTIKSTYPGVPVFLL 102 (276)
T ss_pred CCCEEEEEeCCCccccchHHHHHHHHHhCCCEEEEccCCCCCCCCCccCCcCCHHHHHHHHHHHHHHHHhhCCCCCEEEE
Confidence 34556777799999999999999999988999999999999999764433346666677777777654 134689999
Q ss_pred EeCcchHHHHHHHhhCccceeeeeeeeccCCCCCCCchhhhhhcccCCchhhhhhhhhhccccCCCccchhhhhhhHHH-
Q 024134 91 GHSFGGLSVALAADKFPHKISVAIFLTAFMPDTKHQPSYVVERFSESIPREERLDTQYSIIDESNPSRMSILFGHKFLT- 169 (272)
Q Consensus 91 G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 169 (272)
||||||.+++.+|.++|++++++|+++|............... .....+........ .....+......
T Consensus 103 G~S~GG~ia~~~a~~~p~~i~~lil~~p~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 172 (276)
T PHA02857 103 GHSMGATISILAAYKNPNLFTAMILMSPLVNAEAVPRLNLLAA---------KLMGIFYPNKIVGK-LCPESVSRDMDEV 172 (276)
T ss_pred EcCchHHHHHHHHHhCccccceEEEeccccccccccHHHHHHH---------HHHHHhCCCCccCC-CCHhhccCCHHHH
Confidence 9999999999999999999999999998643211100000000 00000000000000 000000000000
Q ss_pred -HhhccCC---ChhHHHHHHHhccCCccchHHhhhcccccccccCCceeEEEEeCCCCCccHHHHHHHHhcC-CCceEEE
Q 024134 170 -LKLYQLS---PPEDLELAKMLVKPGLLFTDELSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNN-PVNEVMA 244 (272)
Q Consensus 170 -~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~-~~~~~~~ 244 (272)
....... ......+..... .. .......+..+++|+|+|+|++|.++|++.++.+.+.+ +++++++
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~--------~~-~~~~~~~l~~i~~Pvliv~G~~D~i~~~~~~~~l~~~~~~~~~~~~ 243 (276)
T PHA02857 173 YKYQYDPLVNHEKIKAGFASQVL--------KA-TNKVRKIIPKIKTPILILQGTNNEISDVSGAYYFMQHANCNREIKI 243 (276)
T ss_pred HHHhcCCCccCCCccHHHHHHHH--------HH-HHHHHHhcccCCCCEEEEecCCCCcCChHHHHHHHHHccCCceEEE
Confidence 0000000 000000000000 00 00112234567999999999999999999999998876 4689999
Q ss_pred ecCCCcccccCCC---chHHHHHHHHHHhh
Q 024134 245 IKGADHMAMLSKP---QPLSDCFSQIAHKY 271 (272)
Q Consensus 245 ~~~~gH~~~~~~p---~~~~~~i~~fl~~~ 271 (272)
++++||+++.|++ +++.+.+.+||++.
T Consensus 244 ~~~~gH~~~~e~~~~~~~~~~~~~~~l~~~ 273 (276)
T PHA02857 244 YEGAKHHLHKETDEVKKSVMKEIETWIFNR 273 (276)
T ss_pred eCCCcccccCCchhHHHHHHHHHHHHHHHh
Confidence 9999999999977 46888999999863
No 24
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=100.00 E-value=1.3e-34 Score=212.55 Aligned_cols=226 Identities=23% Similarity=0.303 Sum_probs=151.2
Q ss_pred EEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCCCCCCCCcccc-cccchhhchHHHHHHHHHhcCCCcEEEEEeCcchH
Q 024134 19 FVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQ-DVRSFYEYNEPLLEILASLSADEKVILVGHSFGGL 97 (272)
Q Consensus 19 vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~-~~~~~~~~~~~~~~~i~~l~~~~~~~lvG~S~Gg~ 97 (272)
|||+||++++...|..+++.|+ +||+|+++|+||+|.|+.+.. ..++++++++++.++++++ +.++++++|||+||.
T Consensus 1 vv~~hG~~~~~~~~~~~~~~l~-~~~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~lvG~S~Gg~ 78 (228)
T PF12697_consen 1 VVFLHGFGGSSESWDPLAEALA-RGYRVIAFDLPGHGRSDPPPDYSPYSIEDYAEDLAELLDAL-GIKKVILVGHSMGGM 78 (228)
T ss_dssp EEEE-STTTTGGGGHHHHHHHH-TTSEEEEEECTTSTTSSSHSSGSGGSHHHHHHHHHHHHHHT-TTSSEEEEEETHHHH
T ss_pred eEEECCCCCCHHHHHHHHHHHh-CCCEEEEEecCCccccccccccCCcchhhhhhhhhhccccc-ccccccccccccccc
Confidence 7999999999999999999995 799999999999999987663 3478999999999999999 779999999999999
Q ss_pred HHHHHHhhCccceeeeeeeeccCCCCCCCchhhhhhcccCCchhhhhhhhhhccccCCCccchhhhhhhHHHHhhccCCC
Q 024134 98 SVALAADKFPHKISVAIFLTAFMPDTKHQPSYVVERFSESIPREERLDTQYSIIDESNPSRMSILFGHKFLTLKLYQLSP 177 (272)
Q Consensus 98 ~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (272)
+++.++.++|++|+++|+++|...............+.. .+....... ...+....+.... ..
T Consensus 79 ~a~~~a~~~p~~v~~~vl~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~---------~~~~~~~~~~~~~---~~ 141 (228)
T PF12697_consen 79 IALRLAARYPDRVKGLVLLSPPPPLPDSPSRSFGPSFIR-----RLLAWRSRS---------LRRLASRFFYRWF---DG 141 (228)
T ss_dssp HHHHHHHHSGGGEEEEEEESESSSHHHHHCHHHHHHHHH-----HHHHHHHHH---------HHHHHHHHHHHHH---TH
T ss_pred cccccccccccccccceeecccccccccccccccchhhh-----hhhhccccc---------ccccccccccccc---cc
Confidence 999999999999999999998753211000000000000 000000000 0000000000000 00
Q ss_pred hhHHHHHHHhccCCccchHH-hhhcccccccccCCceeEEEEeCCCCCccHHHHHHHHhcCCCceEEEecCCCcccccCC
Q 024134 178 PEDLELAKMLVKPGLLFTDE-LSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNNPVNEVMAIKGADHMAMLSK 256 (272)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~ 256 (272)
.................... ............+++|+++++|++|.+++.+..+.+.+.++++++++++++||++++++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvl~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~ 221 (228)
T PF12697_consen 142 DEPEDLIRSSRRALAEYLRSNLWQADLSEALPRIKVPVLVIHGEDDPIVPPESAEELADKLPNAELVVIPGAGHFLFLEQ 221 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGSSSEEEEEEETTSSSSHHHHHHHHHHHSTTEEEEEETTSSSTHHHHS
T ss_pred ccccccccccccccccccccccccccccccccccCCCeEEeecCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCccHHHC
Confidence 00000000000000000000 01112223345568999999999999999999999999999999999999999999999
Q ss_pred CchHHHH
Q 024134 257 PQPLSDC 263 (272)
Q Consensus 257 p~~~~~~ 263 (272)
|++++++
T Consensus 222 p~~~~~a 228 (228)
T PF12697_consen 222 PDEVAEA 228 (228)
T ss_dssp HHHHHHH
T ss_pred HHHHhcC
Confidence 9999864
No 25
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=100.00 E-value=5.1e-34 Score=211.72 Aligned_cols=232 Identities=18% Similarity=0.193 Sum_probs=147.0
Q ss_pred CeEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcCCCcEEEEEeCcch
Q 024134 17 KHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSADEKVILVGHSFGG 96 (272)
Q Consensus 17 ~~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~lvG~S~Gg 96 (272)
|+|||+||++++...|..+.+.|+ ++|+|+++|+||||.|+.... ++++++++++.+. ..++++++||||||
T Consensus 5 ~~iv~~HG~~~~~~~~~~~~~~l~-~~~~vi~~d~~G~G~s~~~~~--~~~~~~~~~~~~~-----~~~~~~lvG~S~Gg 76 (245)
T TIGR01738 5 VHLVLIHGWGMNAEVFRCLDEELS-AHFTLHLVDLPGHGRSRGFGP--LSLADAAEAIAAQ-----APDPAIWLGWSLGG 76 (245)
T ss_pred ceEEEEcCCCCchhhHHHHHHhhc-cCeEEEEecCCcCccCCCCCC--cCHHHHHHHHHHh-----CCCCeEEEEEcHHH
Confidence 899999999999999999999997 469999999999999875432 4666666655443 23799999999999
Q ss_pred HHHHHHHhhCccceeeeeeeeccCCCCCCCchhhhhhcccCCchhhhhhhhhhccccCCCccchhhhhhhHHHHh-hccC
Q 024134 97 LSVALAADKFPHKISVAIFLTAFMPDTKHQPSYVVERFSESIPREERLDTQYSIIDESNPSRMSILFGHKFLTLK-LYQL 175 (272)
Q Consensus 97 ~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 175 (272)
.+++.+|.++|++++++|++++......... . .... . ............. . .......+.... ....
T Consensus 77 ~~a~~~a~~~p~~v~~~il~~~~~~~~~~~~-~-~~~~----~-~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~ 144 (245)
T TIGR01738 77 LVALHIAATHPDRVRALVTVASSPCFSARED-W-PEGI----K-PDVLTGFQQQLSD-D----YQRTIERFLALQTLGTP 144 (245)
T ss_pred HHHHHHHHHCHHhhheeeEecCCcccccCCc-c-cccC----C-HHHHHHHHHHhhh-h----HHHHHHHHHHHHHhcCC
Confidence 9999999999999999999987632211100 0 0000 0 0000000000000 0 000000000000 0000
Q ss_pred CChhHH-HHHHHhccCC-c---cc---hHHhhhcccccccccCCceeEEEEeCCCCCccHHHHHHHHhcCCCceEEEecC
Q 024134 176 SPPEDL-ELAKMLVKPG-L---LF---TDELSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNNPVNEVMAIKG 247 (272)
Q Consensus 176 ~~~~~~-~~~~~~~~~~-~---~~---~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (272)
...... .....+.... . .. ...+...+.......+++|+++++|++|.++|++..+.+.+.+|+++++++++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (245)
T TIGR01738 145 TARQDARALKQTLLARPTPNVQVLQAGLEILATVDLRQPLQNISVPFLRLYGYLDGLVPAKVVPYLDKLAPHSELYIFAK 224 (245)
T ss_pred ccchHHHHHHHHhhccCCCCHHHHHHHHHHhhcccHHHHHhcCCCCEEEEeecCCcccCHHHHHHHHHhCCCCeEEEeCC
Confidence 000000 0000000000 0 00 01111111222345679999999999999999999999999999999999999
Q ss_pred CCcccccCCCchHHHHHHHHH
Q 024134 248 ADHMAMLSKPQPLSDCFSQIA 268 (272)
Q Consensus 248 ~gH~~~~~~p~~~~~~i~~fl 268 (272)
+||++++|+|+++++.|.+|+
T Consensus 225 ~gH~~~~e~p~~~~~~i~~fi 245 (245)
T TIGR01738 225 AAHAPFLSHAEAFCALLVAFK 245 (245)
T ss_pred CCCCccccCHHHHHHHHHhhC
Confidence 999999999999999999985
No 26
>KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=100.00 E-value=1.2e-33 Score=205.65 Aligned_cols=250 Identities=20% Similarity=0.233 Sum_probs=157.1
Q ss_pred cCCCeEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCCCCCCCCcccc---cccchhhchHHHHHHHHHhcCCCcEEEE
Q 024134 14 KKQKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQ---DVRSFYEYNEPLLEILASLSADEKVILV 90 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~---~~~~~~~~~~~~~~~i~~l~~~~~~~lv 90 (272)
.+++++|||||+|.+...|..-.+.|++ .+.|+++|++|+|.|+.|.- .......+++.+.++.... ++.+.+|+
T Consensus 88 ~~~~plVliHGyGAg~g~f~~Nf~~La~-~~~vyaiDllG~G~SSRP~F~~d~~~~e~~fvesiE~WR~~~-~L~Kmilv 165 (365)
T KOG4409|consen 88 ANKTPLVLIHGYGAGLGLFFRNFDDLAK-IRNVYAIDLLGFGRSSRPKFSIDPTTAEKEFVESIEQWRKKM-GLEKMILV 165 (365)
T ss_pred cCCCcEEEEeccchhHHHHHHhhhhhhh-cCceEEecccCCCCCCCCCCCCCcccchHHHHHHHHHHHHHc-CCcceeEe
Confidence 4678999999999999999999999986 59999999999999987753 2234457788888998888 99999999
Q ss_pred EeCcchHHHHHHHhhCccceeeeeeeeccCCCCCC-Cchhhhh---hcccCCch--hhhhhhhhhccccCCCccchhhhh
Q 024134 91 GHSFGGLSVALAADKFPHKISVAIFLTAFMPDTKH-QPSYVVE---RFSESIPR--EERLDTQYSIIDESNPSRMSILFG 164 (272)
Q Consensus 91 G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~-~~~~~~~---~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 164 (272)
|||+||.++..+|.+||++|+.|||++|....... ....... .+...... ..+-........++..+.....+.
T Consensus 166 GHSfGGYLaa~YAlKyPerV~kLiLvsP~Gf~~~~~~~~~~~~~~~~w~~~~~~~~~~~nPl~~LR~~Gp~Gp~Lv~~~~ 245 (365)
T KOG4409|consen 166 GHSFGGYLAAKYALKYPERVEKLILVSPWGFPEKPDSEPEFTKPPPEWYKALFLVATNFNPLALLRLMGPLGPKLVSRLR 245 (365)
T ss_pred eccchHHHHHHHHHhChHhhceEEEecccccccCCCcchhhcCCChHHHhhhhhhhhcCCHHHHHHhccccchHHHhhhh
Confidence 99999999999999999999999999998654422 1110000 00000000 000000001111111111111111
Q ss_pred hh------------HHHHhhcc--CCChhHHHHHHHhccCCccchHHhhhcccccccccC--CceeEEEEeCCCCCccHH
Q 024134 165 HK------------FLTLKLYQ--LSPPEDLELAKMLVKPGLLFTDELSKANEFSNEGYG--SVKRDFVGSDKDNCIPKE 228 (272)
Q Consensus 165 ~~------------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~P~l~i~g~~D~~~~~~ 228 (272)
++ ++-++.+. ...+........+........+-+ ....... +||+++|+|++|.+ ...
T Consensus 246 ~d~~~k~~~~~~ed~l~~YiY~~n~~~psgE~~fk~l~~~~g~Ar~Pm-----~~r~~~l~~~~pv~fiyG~~dWm-D~~ 319 (365)
T KOG4409|consen 246 PDRFRKFPSLIEEDFLHEYIYHCNAQNPSGETAFKNLFEPGGWARRPM-----IQRLRELKKDVPVTFIYGDRDWM-DKN 319 (365)
T ss_pred HHHHHhccccchhHHHHHHHHHhcCCCCcHHHHHHHHHhccchhhhhH-----HHHHHhhccCCCEEEEecCcccc-cch
Confidence 11 11222111 111112222222222221111111 1111111 69999999999955 444
Q ss_pred HHHHHHhc--CCCceEEEecCCCcccccCCCchHHHHHHHHHHhh
Q 024134 229 FQQWMIQN--NPVNEVMAIKGADHMAMLSKPQPLSDCFSQIAHKY 271 (272)
Q Consensus 229 ~~~~~~~~--~~~~~~~~~~~~gH~~~~~~p~~~~~~i~~fl~~~ 271 (272)
....+.+. ...++.++++++||.+++++|+.|++.|.++++++
T Consensus 320 ~g~~~~~~~~~~~~~~~~v~~aGHhvylDnp~~Fn~~v~~~~~~~ 364 (365)
T KOG4409|consen 320 AGLEVTKSLMKEYVEIIIVPGAGHHVYLDNPEFFNQIVLEECDKV 364 (365)
T ss_pred hHHHHHHHhhcccceEEEecCCCceeecCCHHHHHHHHHHHHhcc
Confidence 44444442 23589999999999999999999999999998864
No 27
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=100.00 E-value=2.9e-33 Score=215.88 Aligned_cols=242 Identities=12% Similarity=0.109 Sum_probs=150.9
Q ss_pred CCCeEEEEecCCCcc-hhHHhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhc-----CCCcEE
Q 024134 15 KQKHFVLVHGSNHGA-WCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLS-----ADEKVI 88 (272)
Q Consensus 15 ~~~~vv~lhG~~~~~-~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~-----~~~~~~ 88 (272)
.+++|||+||++.+. ..|..+...|+++||+|+++|+||||.|+.......+++++++|+.++++.+. ...+++
T Consensus 58 ~~~~VvllHG~~~~~~~~~~~~~~~L~~~Gy~V~~~D~rGhG~S~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~~~~~i~ 137 (330)
T PLN02298 58 PRALIFMVHGYGNDISWTFQSTAIFLAQMGFACFALDLEGHGRSEGLRAYVPNVDLVVEDCLSFFNSVKQREEFQGLPRF 137 (330)
T ss_pred CceEEEEEcCCCCCcceehhHHHHHHHhCCCEEEEecCCCCCCCCCccccCCCHHHHHHHHHHHHHHHHhcccCCCCCEE
Confidence 356799999998664 35677788898899999999999999997654434588899999999999872 124799
Q ss_pred EEEeCcchHHHHHHHhhCccceeeeeeeeccCCCCCCCc-hhhhhhcccCCchhhhhhhhhhccc-cCCCccchhhhh--
Q 024134 89 LVGHSFGGLSVALAADKFPHKISVAIFLTAFMPDTKHQP-SYVVERFSESIPREERLDTQYSIID-ESNPSRMSILFG-- 164 (272)
Q Consensus 89 lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-- 164 (272)
|+||||||.+++.++.++|++|+++|+++|......... ........ .+......... ............
T Consensus 138 l~GhSmGG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (330)
T PLN02298 138 LYGESMGGAICLLIHLANPEGFDGAVLVAPMCKISDKIRPPWPIPQIL------TFVARFLPTLAIVPTADLLEKSVKVP 211 (330)
T ss_pred EEEecchhHHHHHHHhcCcccceeEEEecccccCCcccCCchHHHHHH------HHHHHHCCCCccccCCCcccccccCH
Confidence 999999999999999999999999999998643221100 00000000 00000000000 000000000000
Q ss_pred -hhHHHH-hhccCCChhHHHHHHHhccCCccchHHhhhcccccccccCCceeEEEEeCCCCCccHHHHHHHHhcCC--Cc
Q 024134 165 -HKFLTL-KLYQLSPPEDLELAKMLVKPGLLFTDELSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNNP--VN 240 (272)
Q Consensus 165 -~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~--~~ 240 (272)
...+.. .................. .... ........+++|+|+|+|++|.++|++..+.+.+.++ ++
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~--~~~~~l~~i~~PvLii~G~~D~ivp~~~~~~l~~~i~~~~~ 282 (330)
T PLN02298 212 AKKIIAKRNPMRYNGKPRLGTVVELL-------RVTD--YLGKKLKDVSIPFIVLHGSADVVTDPDVSRALYEEAKSEDK 282 (330)
T ss_pred HHHHHHHhCccccCCCccHHHHHHHH-------HHHH--HHHHhhhhcCCCEEEEecCCCCCCCHHHHHHHHHHhccCCc
Confidence 000000 000000000000000000 0000 0112345568999999999999999999999888764 78
Q ss_pred eEEEecCCCcccccCCCch----HHHHHHHHHHhh
Q 024134 241 EVMAIKGADHMAMLSKPQP----LSDCFSQIAHKY 271 (272)
Q Consensus 241 ~~~~~~~~gH~~~~~~p~~----~~~~i~~fl~~~ 271 (272)
++++++++||++++++|+. +.+.|.+||++.
T Consensus 283 ~l~~~~~a~H~~~~e~pd~~~~~~~~~i~~fl~~~ 317 (330)
T PLN02298 283 TIKIYDGMMHSLLFGEPDENIEIVRRDILSWLNER 317 (330)
T ss_pred eEEEcCCcEeeeecCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999998864 667788888764
No 28
>PRK10749 lysophospholipase L2; Provisional
Probab=100.00 E-value=2.9e-33 Score=215.13 Aligned_cols=248 Identities=13% Similarity=0.143 Sum_probs=155.4
Q ss_pred cCCCeEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCCCCCCCCcccc-----cccchhhchHHHHHHHHHhc---CCC
Q 024134 14 KKQKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQ-----DVRSFYEYNEPLLEILASLS---ADE 85 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~-----~~~~~~~~~~~~~~~i~~l~---~~~ 85 (272)
.++++||++||++.+...|..++..|.+.||+|+++|+||||.|+.+.. ...+++++++|+.++++.+. +..
T Consensus 52 ~~~~~vll~HG~~~~~~~y~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 131 (330)
T PRK10749 52 HHDRVVVICPGRIESYVKYAELAYDLFHLGYDVLIIDHRGQGRSGRLLDDPHRGHVERFNDYVDDLAAFWQQEIQPGPYR 131 (330)
T ss_pred CCCcEEEEECCccchHHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCCCCCCCcCccccHHHHHHHHHHHHHHHHhcCCCC
Confidence 3467999999999999999999999988999999999999999975422 22478999999999998761 457
Q ss_pred cEEEEEeCcchHHHHHHHhhCccceeeeeeeeccCCCCCCCchhhhhhcccCCchhhhhhhhhhcccc--CCCccchh--
Q 024134 86 KVILVGHSFGGLSVALAADKFPHKISVAIFLTAFMPDTKHQPSYVVERFSESIPREERLDTQYSIIDE--SNPSRMSI-- 161 (272)
Q Consensus 86 ~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-- 161 (272)
+++++||||||.+++.+|.++|++++++|+++|...............+................... ........
T Consensus 132 ~~~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 211 (330)
T PRK10749 132 KRYALAHSMGGAILTLFLQRHPGVFDAIALCAPMFGIVLPLPSWMARRILNWAEGHPRIRDGYAIGTGRWRPLPFAINVL 211 (330)
T ss_pred CeEEEEEcHHHHHHHHHHHhCCCCcceEEEECchhccCCCCCcHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCcCCCCC
Confidence 89999999999999999999999999999999864322111111111100000000000000000000 00000000
Q ss_pred hhhhhHHH---HhhccCCCh----hHHHHHHHhccCCccchHHhhh-cccccccccCCceeEEEEeCCCCCccHHHHHHH
Q 024134 162 LFGHKFLT---LKLYQLSPP----EDLELAKMLVKPGLLFTDELSK-ANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWM 233 (272)
Q Consensus 162 ~~~~~~~~---~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~ 233 (272)
...+.... ..+...... ...... ...+.. .........+++|+|+|+|++|.+++++.++.+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~i~~P~Lii~G~~D~vv~~~~~~~~ 281 (330)
T PRK10749 212 THSRERYRRNLRFYADDPELRVGGPTYHWV----------RESILAGEQVLAGAGDITTPLLLLQAEEERVVDNRMHDRF 281 (330)
T ss_pred CCCHHHHHHHHHHHHhCCCcccCCCcHHHH----------HHHHHHHHHHHhhccCCCCCEEEEEeCCCeeeCHHHHHHH
Confidence 00000000 000000000 000000 001100 011123455689999999999999999988888
Q ss_pred HhcC-------CCceEEEecCCCcccccCCC---chHHHHHHHHHHhh
Q 024134 234 IQNN-------PVNEVMAIKGADHMAMLSKP---QPLSDCFSQIAHKY 271 (272)
Q Consensus 234 ~~~~-------~~~~~~~~~~~gH~~~~~~p---~~~~~~i~~fl~~~ 271 (272)
.+.+ +++++++++|+||.++.|.+ +.+.+.|.+||++.
T Consensus 282 ~~~l~~~~~~~~~~~l~~~~gagH~~~~E~~~~r~~v~~~i~~fl~~~ 329 (330)
T PRK10749 282 CEARTAAGHPCEGGKPLVIKGAYHEILFEKDAMRSVALNAIVDFFNRH 329 (330)
T ss_pred HHHHhhcCCCCCCceEEEeCCCcchhhhCCcHHHHHHHHHHHHHHhhc
Confidence 7765 35689999999999999887 56888899999875
No 29
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=100.00 E-value=2.1e-32 Score=203.64 Aligned_cols=238 Identities=17% Similarity=0.156 Sum_probs=153.1
Q ss_pred CCeEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCCCCCCCCcccc-cccchhhchHH-HHHHHHHhcCCCcEEEEEeC
Q 024134 16 QKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQ-DVRSFYEYNEP-LLEILASLSADEKVILVGHS 93 (272)
Q Consensus 16 ~~~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~-~~~~~~~~~~~-~~~~i~~l~~~~~~~lvG~S 93 (272)
+|+|||+||++++...|..+.+.|+ +||+|+++|+||||.|+.+.. ...++++.+++ +..+++.+ +.++++++|||
T Consensus 1 ~~~vv~~hG~~~~~~~~~~~~~~L~-~~~~v~~~d~~g~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~G~S 78 (251)
T TIGR03695 1 KPVLVFLHGFLGSGADWQALIELLG-PHFRCLAIDLPGHGSSQSPDEIERYDFEEAAQDILATLLDQL-GIEPFFLVGYS 78 (251)
T ss_pred CCEEEEEcCCCCchhhHHHHHHHhc-ccCeEEEEcCCCCCCCCCCCccChhhHHHHHHHHHHHHHHHc-CCCeEEEEEec
Confidence 4789999999999999999999998 789999999999999976543 34688899988 77788888 78899999999
Q ss_pred cchHHHHHHHhhCccceeeeeeeeccCCCCCCCchhhhhhccc-----C---CchhhhhhhhhhccccCCCccchhhhhh
Q 024134 94 FGGLSVALAADKFPHKISVAIFLTAFMPDTKHQPSYVVERFSE-----S---IPREERLDTQYSIIDESNPSRMSILFGH 165 (272)
Q Consensus 94 ~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~-----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (272)
+||.+++.+|.++|++|++++++++......... ........ . .....+....... .... ......+
T Consensus 79 ~Gg~ia~~~a~~~~~~v~~lil~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~ 153 (251)
T TIGR03695 79 MGGRIALYYALQYPERVQGLILESGSPGLATEEE-RAARRQNDEQLAQRFEQEGLEAFLDDWYQQ---PLFA-SQKNLPP 153 (251)
T ss_pred cHHHHHHHHHHhCchheeeeEEecCCCCcCchHh-hhhhhhcchhhhhHHHhcCccHHHHHHhcC---ceee-ecccCCh
Confidence 9999999999999999999999987532211100 00000000 0 0000000000000 0000 0000000
Q ss_pred hHH---HHhhccCCChhHHHHHHHhccCCccchHHhhhcccccccccCCceeEEEEeCCCCCccHHHHHHHHhcCCCceE
Q 024134 166 KFL---TLKLYQLSPPEDLELAKMLVKPGLLFTDELSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNNPVNEV 242 (272)
Q Consensus 166 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~ 242 (272)
... .................... .............+++|+++++|++|..++ +..+.+.+..+++++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~-~~~~~~~~~~~~~~~ 224 (251)
T TIGR03695 154 EQRQALRAKRLANNPEGLAKMLRATG--------LGKQPSLWPKLQALTIPVLYLCGEKDEKFV-QIAKEMQKLLPNLTL 224 (251)
T ss_pred HHhHHHHHhcccccchHHHHHHHHhh--------hhcccchHHHhhCCCCceEEEeeCcchHHH-HHHHHHHhcCCCCcE
Confidence 000 00000000000000000000 000011112244568999999999998764 566778888899999
Q ss_pred EEecCCCcccccCCCchHHHHHHHHHH
Q 024134 243 MAIKGADHMAMLSKPQPLSDCFSQIAH 269 (272)
Q Consensus 243 ~~~~~~gH~~~~~~p~~~~~~i~~fl~ 269 (272)
+.++++||++++++|+++++.|.+|++
T Consensus 225 ~~~~~~gH~~~~e~~~~~~~~i~~~l~ 251 (251)
T TIGR03695 225 VIIANAGHNIHLENPEAFAKILLAFLE 251 (251)
T ss_pred EEEcCCCCCcCccChHHHHHHHHHHhC
Confidence 999999999999999999999999984
No 30
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=100.00 E-value=1.6e-32 Score=208.55 Aligned_cols=250 Identities=17% Similarity=0.179 Sum_probs=153.3
Q ss_pred cCCCeEEEEecCCCcchh-HHhhHHHHHhCCCeEEEEcCCCCCCCCccccc--ccchhhchHHHHHHHHHhcCCCcEEEE
Q 024134 14 KKQKHFVLVHGSNHGAWC-WYKVKPRLEAAGHRVTAMDLAASGINMKKIQD--VRSFYEYNEPLLEILASLSADEKVILV 90 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~-~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~--~~~~~~~~~~~~~~i~~l~~~~~~~lv 90 (272)
+.+++|||+||++++... |..+...|.+.||+|+++|+||||.|..+... .++++++++++.++++++ +.++++++
T Consensus 23 ~~~~~vl~~hG~~g~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~li 101 (288)
T TIGR01250 23 GEKIKLLLLHGGPGMSHEYLENLRELLKEEGREVIMYDQLGCGYSDQPDDSDELWTIDYFVDELEEVREKL-GLDKFYLL 101 (288)
T ss_pred CCCCeEEEEcCCCCccHHHHHHHHHHHHhcCCEEEEEcCCCCCCCCCCCcccccccHHHHHHHHHHHHHHc-CCCcEEEE
Confidence 346899999998666544 56666666655899999999999999865433 378999999999999999 78889999
Q ss_pred EeCcchHHHHHHHhhCccceeeeeeeeccCCCCCCCchhhhhhcccCCchhhhhhhhhhcc--ccCCCccchhhhhhhHH
Q 024134 91 GHSFGGLSVALAADKFPHKISVAIFLTAFMPDTKHQPSYVVERFSESIPREERLDTQYSII--DESNPSRMSILFGHKFL 168 (272)
Q Consensus 91 G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 168 (272)
||||||.+++.+|.++|++++++|++++........ ........... ........... ....... .......+.
T Consensus 102 G~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 177 (288)
T TIGR01250 102 GHSWGGMLAQEYALKYGQHLKGLIISSMLDSAPEYV--KELNRLRKELP-PEVRAAIKRCEASGDYDNPE-YQEAVEVFY 177 (288)
T ss_pred EeehHHHHHHHHHHhCccccceeeEecccccchHHH--HHHHHHHhhcC-hhHHHHHHHHHhccCcchHH-HHHHHHHHH
Confidence 999999999999999999999999998754221100 00001100000 00000000000 0000000 000000000
Q ss_pred HHhhcc-CCChhHHH-H--------HHHhccCCccc-hHHhhhcccccccccCCceeEEEEeCCCCCccHHHHHHHHhcC
Q 024134 169 TLKLYQ-LSPPEDLE-L--------AKMLVKPGLLF-TDELSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNN 237 (272)
Q Consensus 169 ~~~~~~-~~~~~~~~-~--------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~ 237 (272)
...... ........ . ........... ...+...........+++|+++++|++|.+ ++...+.+.+.+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~-~~~~~~~~~~~~ 256 (288)
T TIGR01250 178 HHLLCRTRKWPEALKHLKSGMNTNVYNIMQGPNEFTITGNLKDWDITDKLSEIKVPTLLTVGEFDTM-TPEAAREMQELI 256 (288)
T ss_pred HHhhcccccchHHHHHHhhccCHHHHhcccCCccccccccccccCHHHHhhccCCCEEEEecCCCcc-CHHHHHHHHHhc
Confidence 000000 00000000 0 00000000000 000111112223456799999999999985 667788888889
Q ss_pred CCceEEEecCCCcccccCCCchHHHHHHHHHH
Q 024134 238 PVNEVMAIKGADHMAMLSKPQPLSDCFSQIAH 269 (272)
Q Consensus 238 ~~~~~~~~~~~gH~~~~~~p~~~~~~i~~fl~ 269 (272)
+++++++++++||++++|+|+++++.|.+||+
T Consensus 257 ~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fl~ 288 (288)
T TIGR01250 257 AGSRLVVFPDGSHMTMIEDPEVYFKLLSDFIR 288 (288)
T ss_pred cCCeEEEeCCCCCCcccCCHHHHHHHHHHHhC
Confidence 99999999999999999999999999999984
No 31
>PRK07581 hypothetical protein; Validated
Probab=100.00 E-value=1.4e-33 Score=218.35 Aligned_cols=252 Identities=11% Similarity=0.039 Sum_probs=148.0
Q ss_pred CCeEEEEecCCCcchhHHhhH---HHHHhCCCeEEEEcCCCCCCCCcccc--cccchhh-----chHHHHH----HHHHh
Q 024134 16 QKHFVLVHGSNHGAWCWYKVK---PRLEAAGHRVTAMDLAASGINMKKIQ--DVRSFYE-----YNEPLLE----ILASL 81 (272)
Q Consensus 16 ~~~vv~lhG~~~~~~~~~~~~---~~l~~~g~~v~~~d~~G~G~s~~~~~--~~~~~~~-----~~~~~~~----~i~~l 81 (272)
.|+||++||++++...|..++ +.|...+|+||++|+||||.|+.+.. ..+++++ +++++.+ +++++
T Consensus 41 ~~~vll~~~~~~~~~~~~~~~~~~~~l~~~~~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 120 (339)
T PRK07581 41 DNAILYPTWYSGTHQDNEWLIGPGRALDPEKYFIIIPNMFGNGLSSSPSNTPAPFNAARFPHVTIYDNVRAQHRLLTEKF 120 (339)
T ss_pred CCEEEEeCCCCCCcccchhhccCCCccCcCceEEEEecCCCCCCCCCCCCCCCCCCCCCCCceeHHHHHHHHHHHHHHHh
Confidence 356777777776766665443 46755679999999999999976542 1245443 4566655 66788
Q ss_pred cCCCc-EEEEEeCcchHHHHHHHhhCccceeeeeeeeccCCCCCCCchhhhhhcccCCch-hhhhhhhhhccccCCCc--
Q 024134 82 SADEK-VILVGHSFGGLSVALAADKFPHKISVAIFLTAFMPDTKHQPSYVVERFSESIPR-EERLDTQYSIIDESNPS-- 157 (272)
Q Consensus 82 ~~~~~-~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-- 157 (272)
+.++ ++||||||||++|+.+|.++|++|+++|++++........ ..........+.. ..|....... .+...
T Consensus 121 -gi~~~~~lvG~S~GG~va~~~a~~~P~~V~~Lvli~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~ 196 (339)
T PRK07581 121 -GIERLALVVGWSMGAQQTYHWAVRYPDMVERAAPIAGTAKTTPHN-FVFLEGLKAALTADPAFNGGWYAE--PPERGLR 196 (339)
T ss_pred -CCCceEEEEEeCHHHHHHHHHHHHCHHHHhhheeeecCCCCCHHH-HHHHHHHHHHHHhCCCCCCCCCCC--cHHHHHH
Confidence 8899 5799999999999999999999999999998754321100 0000000000000 0000000000 00000
Q ss_pred -----cchhhhhhhHHHHhhccCCC----hhHH-HHHHHhc-cCC-ccchHH---hh------h----cccccccccCCc
Q 024134 158 -----RMSILFGHKFLTLKLYQLSP----PEDL-ELAKMLV-KPG-LLFTDE---LS------K----ANEFSNEGYGSV 212 (272)
Q Consensus 158 -----~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~-~~~-~~~~~~---~~------~----~~~~~~~~~~~~ 212 (272)
.....+.+.++......... .... ....... ... ...... +. . .+....+..+++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~L~~I~~ 276 (339)
T PRK07581 197 AHARVYAGWGFSQAFYRQELWRAMGYASLEDFLVGFWEGNFLPRDPNNLLAMLWTWQRGDISRNPAYGGDLAAALGSITA 276 (339)
T ss_pred HHHHHHHHHHhHHHHHHhhhccccChhhHHHHHHHHHHHhhcccCcccHHHHHHHhhhcccccCcccCCCHHHHHhcCCC
Confidence 00000001111110000000 0000 0000000 000 000000 00 0 011223556799
Q ss_pred eeEEEEeCCCCCccHHHHHHHHhcCCCceEEEecC-CCcccccCCCchHHHHHHHHHHhh
Q 024134 213 KRDFVGSDKDNCIPKEFQQWMIQNNPVNEVMAIKG-ADHMAMLSKPQPLSDCFSQIAHKY 271 (272)
Q Consensus 213 P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~-~gH~~~~~~p~~~~~~i~~fl~~~ 271 (272)
|+|+|+|++|..+|+...+.+.+.+|+++++++++ +||++++++|++++..|.+||+++
T Consensus 277 PtLvI~G~~D~~~p~~~~~~l~~~ip~a~l~~i~~~~GH~~~~~~~~~~~~~~~~~~~~~ 336 (339)
T PRK07581 277 KTFVMPISTDLYFPPEDCEAEAALIPNAELRPIESIWGHLAGFGQNPADIAFIDAALKEL 336 (339)
T ss_pred CEEEEEeCCCCCCCHHHHHHHHHhCCCCeEEEeCCCCCccccccCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998 999999999999999999999985
No 32
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=100.00 E-value=5.6e-33 Score=214.83 Aligned_cols=242 Identities=12% Similarity=0.102 Sum_probs=150.3
Q ss_pred CCeEEEEecCCCcch------------hHHhhHH---HHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHH
Q 024134 16 QKHFVLVHGSNHGAW------------CWYKVKP---RLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILAS 80 (272)
Q Consensus 16 ~~~vv~lhG~~~~~~------------~~~~~~~---~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~ 80 (272)
++++||+||++++.. .|..++. .|..++|+|+++|+||||.|... .++++++++++.+++++
T Consensus 57 ~~p~vll~g~~~~~~~~~~~~~~~~~~~w~~~v~~~~~L~~~~~~Vi~~Dl~G~g~s~~~---~~~~~~~a~dl~~ll~~ 133 (343)
T PRK08775 57 GAPVVFVAGGISAHRHVAATATFPEKGWWEGLVGSGRALDPARFRLLAFDFIGADGSLDV---PIDTADQADAIALLLDA 133 (343)
T ss_pred CCCEEEEecCCCcccccccccCCCCCCcchhccCCCCccCccccEEEEEeCCCCCCCCCC---CCCHHHHHHHHHHHHHH
Confidence 556888877776665 6888886 57434699999999999988432 36789999999999999
Q ss_pred hcCCCc-EEEEEeCcchHHHHHHHhhCccceeeeeeeeccCCCCCCCchhhhh--hc-ccCCc----hhhhhh--hhhhc
Q 024134 81 LSADEK-VILVGHSFGGLSVALAADKFPHKISVAIFLTAFMPDTKHQPSYVVE--RF-SESIP----REERLD--TQYSI 150 (272)
Q Consensus 81 l~~~~~-~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~--~~-~~~~~----~~~~~~--~~~~~ 150 (272)
+ +.++ ++++||||||++++.+|.++|++|+++|++++..... ........ .. ..... ...... .....
T Consensus 134 l-~l~~~~~lvG~SmGG~vA~~~A~~~P~~V~~LvLi~s~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (343)
T PRK08775 134 L-GIARLHAFVGYSYGALVGLQFASRHPARVRTLVVVSGAHRAH-PYAAAWRALQRRAVALGQLQCAEKHGLALARQLAM 211 (343)
T ss_pred c-CCCcceEEEEECHHHHHHHHHHHHChHhhheEEEECccccCC-HHHHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHH
Confidence 9 7766 4799999999999999999999999999999863321 10000000 00 00000 000000 00000
Q ss_pred cccCCCccchhhhhhhHHHHhhccCCC-------hhHHHHHH----HhccC--CccchHHhhhcc-cccccccCCceeEE
Q 024134 151 IDESNPSRMSILFGHKFLTLKLYQLSP-------PEDLELAK----MLVKP--GLLFTDELSKAN-EFSNEGYGSVKRDF 216 (272)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~----~~~~~--~~~~~~~~~~~~-~~~~~~~~~~P~l~ 216 (272)
........+...+..... ........ ..... ...+........ .......+++|+|+
T Consensus 212 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~I~~PtLv 282 (343)
T PRK08775 212 ---------LSYRTPEEFEERFDAPPEVINGRVRVAAEDYLDAAGAQYVARTPVNAYLRLSESIDLHRVDPEAIRVPTVV 282 (343)
T ss_pred ---------HHcCCHHHHHHHhCCCccccCCCccchHHHHHHHHHHHHHHhcChhHHHHHHHHHhhcCCChhcCCCCeEE
Confidence 000000001111110000 00000000 00000 000001000000 11224567999999
Q ss_pred EEeCCCCCccHHHHHHHHhcC-CCceEEEecC-CCcccccCCCchHHHHHHHHHHhh
Q 024134 217 VGSDKDNCIPKEFQQWMIQNN-PVNEVMAIKG-ADHMAMLSKPQPLSDCFSQIAHKY 271 (272)
Q Consensus 217 i~g~~D~~~~~~~~~~~~~~~-~~~~~~~~~~-~gH~~~~~~p~~~~~~i~~fl~~~ 271 (272)
|+|++|.++|++..+.+.+.+ |+++++++++ +||++++|+|++|++.|.+||++.
T Consensus 283 i~G~~D~~~p~~~~~~~~~~i~p~a~l~~i~~~aGH~~~lE~Pe~~~~~l~~FL~~~ 339 (343)
T PRK08775 283 VAVEGDRLVPLADLVELAEGLGPRGSLRVLRSPYGHDAFLKETDRIDAILTTALRST 339 (343)
T ss_pred EEeCCCEeeCHHHHHHHHHHcCCCCeEEEEeCCccHHHHhcCHHHHHHHHHHHHHhc
Confidence 999999999999888888877 6999999985 999999999999999999999864
No 33
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=100.00 E-value=4.4e-32 Score=212.60 Aligned_cols=250 Identities=16% Similarity=0.164 Sum_probs=149.3
Q ss_pred cCCCeEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCCCCCCCCcccccccch----hhchHHHHHHHHHhcCCCcEEE
Q 024134 14 KKQKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSF----YEYNEPLLEILASLSADEKVIL 89 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~----~~~~~~~~~~i~~l~~~~~~~l 89 (272)
+++|+|||+||++++...|...++.|++ +|+|+++|+||||.|+.+.....+. +.+++++.++++.+ +.+++++
T Consensus 103 ~~~p~vvllHG~~~~~~~~~~~~~~L~~-~~~vi~~D~rG~G~S~~~~~~~~~~~~~~~~~~~~i~~~~~~l-~~~~~~l 180 (402)
T PLN02894 103 EDAPTLVMVHGYGASQGFFFRNFDALAS-RFRVIAIDQLGWGGSSRPDFTCKSTEETEAWFIDSFEEWRKAK-NLSNFIL 180 (402)
T ss_pred CCCCEEEEECCCCcchhHHHHHHHHHHh-CCEEEEECCCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHc-CCCCeEE
Confidence 4678999999999999999888899975 5999999999999997654221121 23566777888888 7889999
Q ss_pred EEeCcchHHHHHHHhhCccceeeeeeeeccCCCCCCCch-hhhhhcccCCchhhhhhhhhhcc-ccCCCc--------cc
Q 024134 90 VGHSFGGLSVALAADKFPHKISVAIFLTAFMPDTKHQPS-YVVERFSESIPREERLDTQYSII-DESNPS--------RM 159 (272)
Q Consensus 90 vG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--------~~ 159 (272)
+||||||.+++.+|.++|++|+++|+++|.......... ....... ..|....+... .....+ +.
T Consensus 181 vGhS~GG~la~~~a~~~p~~v~~lvl~~p~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~p~~~~~~~gp~ 255 (402)
T PLN02894 181 LGHSFGGYVAAKYALKHPEHVQHLILVGPAGFSSESDDKSEWLTKFR-----ATWKGAVLNHLWESNFTPQKIIRGLGPW 255 (402)
T ss_pred EEECHHHHHHHHHHHhCchhhcEEEEECCccccCCcchhHHHHhhcc-----hhHHHHHHHHHhhcCCCHHHHHHhccch
Confidence 999999999999999999999999999876432221110 0000000 00100000000 000000 00
Q ss_pred hhhhhhhHHHHhhccC-----CChhHHH-HHHHh-----ccCCccc-h------HHhhhcccccccccCCceeEEEEeCC
Q 024134 160 SILFGHKFLTLKLYQL-----SPPEDLE-LAKML-----VKPGLLF-T------DELSKANEFSNEGYGSVKRDFVGSDK 221 (272)
Q Consensus 160 ~~~~~~~~~~~~~~~~-----~~~~~~~-~~~~~-----~~~~~~~-~------~~~~~~~~~~~~~~~~~P~l~i~g~~ 221 (272)
...+...+....+... ....... ..... ....... . ......+.......+++|+++|+|++
T Consensus 256 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~I~vP~liI~G~~ 335 (402)
T PLN02894 256 GPNLVRRYTTARFGAHSTGDILSEEESKLLTDYVYHTLAAKASGELCLKYIFSFGAFARKPLLESASEWKVPTTFIYGRH 335 (402)
T ss_pred hHHHHHHHHHHHhhhcccccccCcchhhHHHHHHHHhhcCCCchHHHHHHhccCchhhcchHhhhcccCCCCEEEEEeCC
Confidence 0000000000000000 0000000 00000 0000000 0 00111122233556799999999999
Q ss_pred CCCccHHHHHHHHhcC-CCceEEEecCCCcccccCCCchHHHHHHHHHHhh
Q 024134 222 DNCIPKEFQQWMIQNN-PVNEVMAIKGADHMAMLSKPQPLSDCFSQIAHKY 271 (272)
Q Consensus 222 D~~~~~~~~~~~~~~~-~~~~~~~~~~~gH~~~~~~p~~~~~~i~~fl~~~ 271 (272)
|.+.+ .....+.+.. +.+++++++++||+++.|+|++|++.|.+|++.+
T Consensus 336 D~i~~-~~~~~~~~~~~~~~~~~~i~~aGH~~~~E~P~~f~~~l~~~~~~~ 385 (402)
T PLN02894 336 DWMNY-EGAVEARKRMKVPCEIIRVPQGGHFVFLDNPSGFHSAVLYACRKY 385 (402)
T ss_pred CCCCc-HHHHHHHHHcCCCCcEEEeCCCCCeeeccCHHHHHHHHHHHHHHh
Confidence 98776 4444444444 4689999999999999999999999999998765
No 34
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=100.00 E-value=6.2e-31 Score=206.68 Aligned_cols=238 Identities=21% Similarity=0.257 Sum_probs=154.1
Q ss_pred cCCCeEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcCCCcEEEEEeC
Q 024134 14 KKQKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSADEKVILVGHS 93 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~lvG~S 93 (272)
+++++|||+||++++...|..+.+.|.+ +|+|+++|+||||.|..... ..+++++++++.++++.+ +..+++++|||
T Consensus 129 ~~~~~vl~~HG~~~~~~~~~~~~~~l~~-~~~v~~~d~~g~G~s~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~lvG~S 205 (371)
T PRK14875 129 GDGTPVVLIHGFGGDLNNWLFNHAALAA-GRPVIALDLPGHGASSKAVG-AGSLDELAAAVLAFLDAL-GIERAHLVGHS 205 (371)
T ss_pred CCCCeEEEECCCCCccchHHHHHHHHhc-CCEEEEEcCCCCCCCCCCCC-CCCHHHHHHHHHHHHHhc-CCccEEEEeec
Confidence 4568999999999999999999999975 59999999999999965433 368999999999999999 77899999999
Q ss_pred cchHHHHHHHhhCccceeeeeeeeccCCCCCCCchhhhhhcccCCchhhhhhhhhhccccCCCccchhhhhhhHHHHhhc
Q 024134 94 FGGLSVALAADKFPHKISVAIFLTAFMPDTKHQPSYVVERFSESIPREERLDTQYSIIDESNPSRMSILFGHKFLTLKLY 173 (272)
Q Consensus 94 ~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (272)
+||.+++.+|.++|+++.++|++++......... .....+........+.......... ...+...+......
T Consensus 206 ~Gg~~a~~~a~~~~~~v~~lv~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 278 (371)
T PRK14875 206 MGGAVALRLAARAPQRVASLTLIAPAGLGPEING-DYIDGFVAAESRRELKPVLELLFAD------PALVTRQMVEDLLK 278 (371)
T ss_pred hHHHHHHHHHHhCchheeEEEEECcCCcCcccch-hHHHHhhcccchhHHHHHHHHHhcC------hhhCCHHHHHHHHH
Confidence 9999999999999999999999987632221111 0111111100000000000000000 00011111111110
Q ss_pred cCC--C-hhHHH-HHHHhccCCccchHHhhhcccccccccCCceeEEEEeCCCCCccHHHHHHHHhcCCCceEEEecCCC
Q 024134 174 QLS--P-PEDLE-LAKMLVKPGLLFTDELSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNNPVNEVMAIKGAD 249 (272)
Q Consensus 174 ~~~--~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~g 249 (272)
... . ..... .......... ...........+++|+++++|++|.++|++..+.+ .+++++.+++++|
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~i~~Pvlii~g~~D~~vp~~~~~~l---~~~~~~~~~~~~g 349 (371)
T PRK14875 279 YKRLDGVDDALRALADALFAGGR------QRVDLRDRLASLAIPVLVIWGEQDRIIPAAHAQGL---PDGVAVHVLPGAG 349 (371)
T ss_pred HhccccHHHHHHHHHHHhccCcc------cchhHHHHHhcCCCCEEEEEECCCCccCHHHHhhc---cCCCeEEEeCCCC
Confidence 000 0 00000 0000000000 00011112345689999999999999998766543 3468999999999
Q ss_pred cccccCCCchHHHHHHHHHHh
Q 024134 250 HMAMLSKPQPLSDCFSQIAHK 270 (272)
Q Consensus 250 H~~~~~~p~~~~~~i~~fl~~ 270 (272)
|++++++|+++++.|.+||++
T Consensus 350 H~~~~e~p~~~~~~i~~fl~~ 370 (371)
T PRK14875 350 HMPQMEAAADVNRLLAEFLGK 370 (371)
T ss_pred CChhhhCHHHHHHHHHHHhcc
Confidence 999999999999999999975
No 35
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=99.98 E-value=7.5e-31 Score=196.62 Aligned_cols=244 Identities=16% Similarity=0.182 Sum_probs=158.6
Q ss_pred CeEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCCCCCCCC-cccccccchhhchHHHHHHHHHhc---CCCcEEEEEe
Q 024134 17 KHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINM-KKIQDVRSFYEYNEPLLEILASLS---ADEKVILVGH 92 (272)
Q Consensus 17 ~~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~-~~~~~~~~~~~~~~~~~~~i~~l~---~~~~~~lvG~ 92 (272)
.+||++||++.+...|..++..|..+||.|+++|+||||.|. .......++.++.+|+..+++... ...+++++||
T Consensus 35 g~Vvl~HG~~Eh~~ry~~la~~l~~~G~~V~~~D~RGhG~S~r~~rg~~~~f~~~~~dl~~~~~~~~~~~~~~p~~l~gH 114 (298)
T COG2267 35 GVVVLVHGLGEHSGRYEELADDLAARGFDVYALDLRGHGRSPRGQRGHVDSFADYVDDLDAFVETIAEPDPGLPVFLLGH 114 (298)
T ss_pred cEEEEecCchHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCcCCchhHHHHHHHHHHHHHHHhccCCCCCeEEEEe
Confidence 799999999999999999999999999999999999999998 666665679999999999999882 4689999999
Q ss_pred CcchHHHHHHHhhCccceeeeeeeeccCCCCCCCchhhhhhcccCCchhhhhh-hhhhccccCCCccchhhhhhhHHHHh
Q 024134 93 SFGGLSVALAADKFPHKISVAIFLTAFMPDTKHQPSYVVERFSESIPREERLD-TQYSIIDESNPSRMSILFGHKFLTLK 171 (272)
Q Consensus 93 S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (272)
||||.+++.++.+++..|+++||.+|..................... ..+.. ..+.. . ..........+.......
T Consensus 115 SmGg~Ia~~~~~~~~~~i~~~vLssP~~~l~~~~~~~~~~~~~~~~~-~~~~p~~~~~~-~-~~~~~~~~~~sr~~~~~~ 191 (298)
T COG2267 115 SMGGLIALLYLARYPPRIDGLVLSSPALGLGGAILRLILARLALKLL-GRIRPKLPVDS-N-LLEGVLTDDLSRDPAEVA 191 (298)
T ss_pred CcHHHHHHHHHHhCCccccEEEEECccccCChhHHHHHHHHHhcccc-cccccccccCc-c-cccCcCcchhhcCHHHHH
Confidence 99999999999999999999999999865443000000011000000 00000 00000 0 000000011111110111
Q ss_pred hccCCCh-----hHHHHHHHhccCCccchHHhhhcccccccccCCceeEEEEeCCCCCcc-HHHHHHHHhcC--CCceEE
Q 024134 172 LYQLSPP-----EDLELAKMLVKPGLLFTDELSKANEFSNEGYGSVKRDFVGSDKDNCIP-KEFQQWMIQNN--PVNEVM 243 (272)
Q Consensus 172 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~-~~~~~~~~~~~--~~~~~~ 243 (272)
.+...+. ....+....... . ..........+++|+|+++|++|.+++ .+...++.+.. ++.+++
T Consensus 192 ~~~~dP~~~~~~~~~~w~~~~~~a-------~-~~~~~~~~~~~~~PvLll~g~~D~vv~~~~~~~~~~~~~~~~~~~~~ 263 (298)
T COG2267 192 AYEADPLIGVGGPVSRWVDLALLA-------G-RVPALRDAPAIALPVLLLQGGDDRVVDNVEGLARFFERAGSPDKELK 263 (298)
T ss_pred HHhcCCccccCCccHHHHHHHHHh-------h-cccchhccccccCCEEEEecCCCccccCcHHHHHHHHhcCCCCceEE
Confidence 1111110 000111111100 0 011223345568999999999999999 67776666554 567899
Q ss_pred EecCCCcccccCCC---chHHHHHHHHHHhh
Q 024134 244 AIKGADHMAMLSKP---QPLSDCFSQIAHKY 271 (272)
Q Consensus 244 ~~~~~gH~~~~~~p---~~~~~~i~~fl~~~ 271 (272)
+++|+.|.++.|.+ +++.+.+.+|+.+.
T Consensus 264 ~~~g~~He~~~E~~~~r~~~~~~~~~~l~~~ 294 (298)
T COG2267 264 VIPGAYHELLNEPDRAREEVLKDILAWLAEA 294 (298)
T ss_pred ecCCcchhhhcCcchHHHHHHHHHHHHHHhh
Confidence 99999999998755 57888888888764
No 36
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=99.98 E-value=3.2e-32 Score=211.29 Aligned_cols=251 Identities=12% Similarity=0.101 Sum_probs=152.3
Q ss_pred CCCeEEEEecCCCcch-----------hHHhhH---HHHHhCCCeEEEEcCCC--CCCCCcc----c-------ccccch
Q 024134 15 KQKHFVLVHGSNHGAW-----------CWYKVK---PRLEAAGHRVTAMDLAA--SGINMKK----I-------QDVRSF 67 (272)
Q Consensus 15 ~~~~vv~lhG~~~~~~-----------~~~~~~---~~l~~~g~~v~~~d~~G--~G~s~~~----~-------~~~~~~ 67 (272)
++++|||+||++++.. .|..++ ..|..++|+|+++|+|| ||.|... . ...+++
T Consensus 30 ~~~~vll~Hg~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~D~~G~~~g~s~~~~~~~~~~~~~~~~~~~~~ 109 (351)
T TIGR01392 30 RSNAVLVCHALTGDAHVAGYHDDGDPGWWDDLIGPGRAIDTDRYFVVCSNVLGGCYGSTGPSSINPGGRPYGSDFPLITI 109 (351)
T ss_pred CCCEEEEcCCcCcchhhcccCCCCCCCchhhccCCCCCcCCCceEEEEecCCCCCCCCCCCCCCCCCCCcCCCCCCCCcH
Confidence 3579999999999764 377665 25545779999999999 5655431 1 113789
Q ss_pred hhchHHHHHHHHHhcCCCc-EEEEEeCcchHHHHHHHhhCccceeeeeeeeccCCCCCCCchhh--h-hhcccCCchhhh
Q 024134 68 YEYNEPLLEILASLSADEK-VILVGHSFGGLSVALAADKFPHKISVAIFLTAFMPDTKHQPSYV--V-ERFSESIPREER 143 (272)
Q Consensus 68 ~~~~~~~~~~i~~l~~~~~-~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~ 143 (272)
+++++++.++++++ +.++ ++++||||||++++.+|.++|++|+++|++++............ . ...... ..+
T Consensus 110 ~~~~~~~~~~~~~l-~~~~~~~l~G~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 185 (351)
T TIGR01392 110 RDDVKAQKLLLDHL-GIEQIAAVVGGSMGGMQALEWAIDYPERVRAIVVLATSARHSAWCIAFNEVQRQAILAD---PNW 185 (351)
T ss_pred HHHHHHHHHHHHHc-CCCCceEEEEECHHHHHHHHHHHHChHhhheEEEEccCCcCCHHHHHHHHHHHHHHHhC---CCC
Confidence 99999999999999 8888 99999999999999999999999999999998643221110000 0 000000 000
Q ss_pred hhhhhhccccCCC-ccc------hhhhhhhHHHHhhccCCCh--------------hHHH--HHHHhcc---CCc--cch
Q 024134 144 LDTQYSIIDESNP-SRM------SILFGHKFLTLKLYQLSPP--------------EDLE--LAKMLVK---PGL--LFT 195 (272)
Q Consensus 144 ~~~~~~~~~~~~~-~~~------~~~~~~~~~~~~~~~~~~~--------------~~~~--~~~~~~~---~~~--~~~ 195 (272)
..........+.. ... ........+...+...... .... ....+.. ... ...
T Consensus 186 ~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 265 (351)
T TIGR01392 186 NDGDYYEDGQPDRGLALARMLAHLTYRSEESMAERFGRAPQSGESPASGFDTRFQVESYLRYQGDKFVDRFDANSYLYLT 265 (351)
T ss_pred CCCCCCCCCChhhHHHHHHHHHHHhcCCHHHHHHHhCcCcccccccccccCccchHHHHHHHHHHHHHhhcCcchHHHHH
Confidence 0000000000000 000 0000011111111110000 0000 0000000 000 000
Q ss_pred HHhhhcc-------cccccccCCceeEEEEeCCCCCccHHHHHHHHhcCCCceEE-----EecCCCcccccCCCchHHHH
Q 024134 196 DELSKAN-------EFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNNPVNEVM-----AIKGADHMAMLSKPQPLSDC 263 (272)
Q Consensus 196 ~~~~~~~-------~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~-----~~~~~gH~~~~~~p~~~~~~ 263 (272)
..+...+ ....+..+++|+|+|+|++|.++|++..+.+++.+|+++++ +++++||++++++|+++++.
T Consensus 266 ~~l~~~d~~~~~~~~~~~l~~I~~P~Lvi~G~~D~~~p~~~~~~~a~~i~~~~~~v~~~~i~~~~GH~~~le~p~~~~~~ 345 (351)
T TIGR01392 266 RALDTHDLGRGRGSLTEALSRIKAPFLVVSITSDWLFPPAESRELAKALPAAGLRVTYVEIESPYGHDAFLVETDQVEEL 345 (351)
T ss_pred HHHHhcCCcCCCCCHHHHHhhCCCCEEEEEeCCccccCHHHHHHHHHHHhhcCCceEEEEeCCCCCcchhhcCHHHHHHH
Confidence 1111111 12346677999999999999999999999999999988765 56789999999999999999
Q ss_pred HHHHHH
Q 024134 264 FSQIAH 269 (272)
Q Consensus 264 i~~fl~ 269 (272)
|.+||+
T Consensus 346 l~~FL~ 351 (351)
T TIGR01392 346 IRGFLR 351 (351)
T ss_pred HHHHhC
Confidence 999985
No 37
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=99.98 E-value=2.8e-31 Score=207.42 Aligned_cols=252 Identities=11% Similarity=0.088 Sum_probs=151.2
Q ss_pred CCeEEEEecCCCcchh-------------HHhhHH---HHHhCCCeEEEEcCCCC-CCCCcccc-------------ccc
Q 024134 16 QKHFVLVHGSNHGAWC-------------WYKVKP---RLEAAGHRVTAMDLAAS-GINMKKIQ-------------DVR 65 (272)
Q Consensus 16 ~~~vv~lhG~~~~~~~-------------~~~~~~---~l~~~g~~v~~~d~~G~-G~s~~~~~-------------~~~ 65 (272)
+|+|||+||++++... |..++. .|...+|+|+++|++|+ |.|+.+.. ..+
T Consensus 48 ~p~vvl~HG~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~Dl~G~~~~s~~~~~~~~~~~~~~~~~~~~~ 127 (379)
T PRK00175 48 SNAVLICHALTGDHHVAGPHSPDDPKPGWWDNMVGPGKPIDTDRYFVICSNVLGGCKGSTGPSSINPDTGKPYGSDFPVI 127 (379)
T ss_pred CCEEEEeCCcCCchhhcccccccCCCCcchhhccCCCCccCccceEEEeccCCCCCCCCCCCCCCCCCCCCcccCCCCcC
Confidence 6899999999999985 555552 33245799999999983 54432210 147
Q ss_pred chhhchHHHHHHHHHhcCCCc-EEEEEeCcchHHHHHHHhhCccceeeeeeeeccCCCCCCCchh---hhhhcccCCchh
Q 024134 66 SFYEYNEPLLEILASLSADEK-VILVGHSFGGLSVALAADKFPHKISVAIFLTAFMPDTKHQPSY---VVERFSESIPRE 141 (272)
Q Consensus 66 ~~~~~~~~~~~~i~~l~~~~~-~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~---~~~~~~~~~~~~ 141 (272)
+++++++++.++++++ +.++ ++++||||||++++.+|.++|++|+++|++++........... ........ .
T Consensus 128 ~~~~~~~~~~~~l~~l-~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~i~~~---~ 203 (379)
T PRK00175 128 TIRDWVRAQARLLDAL-GITRLAAVVGGSMGGMQALEWAIDYPDRVRSALVIASSARLSAQNIAFNEVARQAILAD---P 203 (379)
T ss_pred CHHHHHHHHHHHHHHh-CCCCceEEEEECHHHHHHHHHHHhChHhhhEEEEECCCcccCHHHHHHHHHHHHHHHhC---C
Confidence 8999999999999999 8888 5899999999999999999999999999999764322111000 00000000 0
Q ss_pred hhhhhhhhc-cccCCCcc-c------hhhhhhhHHHHhhccC----CC------hhHHH-HH----HHhc-cCCc-cc--
Q 024134 142 ERLDTQYSI-IDESNPSR-M------SILFGHKFLTLKLYQL----SP------PEDLE-LA----KMLV-KPGL-LF-- 194 (272)
Q Consensus 142 ~~~~~~~~~-~~~~~~~~-~------~~~~~~~~~~~~~~~~----~~------~~~~~-~~----~~~~-~~~~-~~-- 194 (272)
.|....... ...+.... . ....+...+...+... .. ..... .. .... .... .+
T Consensus 204 ~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~s~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~~~~~ 283 (379)
T PRK00175 204 DWHGGDYYEHGVVPERGLAVARMIGHITYLSDDELDEKFGRELQSGELPFGFDVEFQVESYLRYQGDKFVERFDANSYLY 283 (379)
T ss_pred CCCCCCcccCCCChhHHHHHHHHHHHHHhcCHHHHHhhcCccccccccccCCCccchHHHHHHHHHHHHhhccCchHHHH
Confidence 000000000 00000000 0 0000000000000000 00 00000 00 0000 0000 00
Q ss_pred -hHHhhhc--------ccccccccCCceeEEEEeCCCCCccHHHHHHHHhcCCCc----eEEEec-CCCcccccCCCchH
Q 024134 195 -TDELSKA--------NEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNNPVN----EVMAIK-GADHMAMLSKPQPL 260 (272)
Q Consensus 195 -~~~~~~~--------~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~----~~~~~~-~~gH~~~~~~p~~~ 260 (272)
...+... +....+..|++|+|+|+|++|.++|++..+.+++.++++ ++++++ ++||++++|+|+++
T Consensus 284 ~~~~~~~~d~~~~~~~d~~~~l~~I~~PtLvI~G~~D~~~p~~~~~~la~~i~~a~~~~~l~~i~~~~GH~~~le~p~~~ 363 (379)
T PRK00175 284 LTRALDYFDPARGRGGDLAAALARIKARFLVVSFTSDWLFPPARSREIVDALLAAGADVSYAEIDSPYGHDAFLLDDPRY 363 (379)
T ss_pred HHHHHHhccccCCCCCCHHHHHhcCCCCEEEEEECCccccCHHHHHHHHHHHHhcCCCeEEEEeCCCCCchhHhcCHHHH
Confidence 0001010 112335677999999999999999999999999999887 777775 89999999999999
Q ss_pred HHHHHHHHHhh
Q 024134 261 SDCFSQIAHKY 271 (272)
Q Consensus 261 ~~~i~~fl~~~ 271 (272)
++.|.+||++.
T Consensus 364 ~~~L~~FL~~~ 374 (379)
T PRK00175 364 GRLVRAFLERA 374 (379)
T ss_pred HHHHHHHHHhh
Confidence 99999999864
No 38
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=99.97 E-value=1.4e-30 Score=202.47 Aligned_cols=239 Identities=16% Similarity=0.127 Sum_probs=153.3
Q ss_pred CCCeEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhc---CCCcEEEEE
Q 024134 15 KQKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLS---ADEKVILVG 91 (272)
Q Consensus 15 ~~~~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~---~~~~~~lvG 91 (272)
.+++|||+||++++...|..+++.|+++||+|+++|+||||.|+.......+++.+++|+.++++.+. ...+++++|
T Consensus 135 ~~~~Vl~lHG~~~~~~~~~~~a~~L~~~Gy~V~~~D~rGhG~S~~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lvG 214 (395)
T PLN02652 135 MRGILIIIHGLNEHSGRYLHFAKQLTSCGFGVYAMDWIGHGGSDGLHGYVPSLDYVVEDTEAFLEKIRSENPGVPCFLFG 214 (395)
T ss_pred CceEEEEECCchHHHHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 45689999999999999999999999999999999999999998765444578888999999999872 234799999
Q ss_pred eCcchHHHHHHHhhCcc---ceeeeeeeeccCCCCCCCchhhhhhcccCCchhhhhhhhhhccccCCCcc--chhhhhhh
Q 024134 92 HSFGGLSVALAADKFPH---KISVAIFLTAFMPDTKHQPSYVVERFSESIPREERLDTQYSIIDESNPSR--MSILFGHK 166 (272)
Q Consensus 92 ~S~Gg~~a~~~a~~~p~---~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 166 (272)
|||||.+++.++ .+|+ +++++|+.+|......... ....+ .................. ......+.
T Consensus 215 hSmGG~ial~~a-~~p~~~~~v~glVL~sP~l~~~~~~~--~~~~~------~~l~~~~~p~~~~~~~~~~~~~~s~~~~ 285 (395)
T PLN02652 215 HSTGGAVVLKAA-SYPSIEDKLEGIVLTSPALRVKPAHP--IVGAV------APIFSLVAPRFQFKGANKRGIPVSRDPA 285 (395)
T ss_pred ECHHHHHHHHHH-hccCcccccceEEEECcccccccchH--HHHHH------HHHHHHhCCCCcccCcccccCCcCCCHH
Confidence 999999999877 4664 7999999988643221110 00000 000000000000000000 00000011
Q ss_pred HHHHhhccCCC---hhHHHHHHHhccCCccchHHhhhcccccccccCCceeEEEEeCCCCCccHHHHHHHHhcCC--Cce
Q 024134 167 FLTLKLYQLSP---PEDLELAKMLVKPGLLFTDELSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNNP--VNE 241 (272)
Q Consensus 167 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~--~~~ 241 (272)
........... .......... ... . .........+++|+|+++|++|.++|++.++.+.+..+ +.+
T Consensus 286 ~~~~~~~dp~~~~g~i~~~~~~~~-------~~~-~-~~l~~~L~~I~vPvLIi~G~~D~vvp~~~a~~l~~~~~~~~k~ 356 (395)
T PLN02652 286 ALLAKYSDPLVYTGPIRVRTGHEI-------LRI-S-SYLTRNFKSVTVPFMVLHGTADRVTDPLASQDLYNEAASRHKD 356 (395)
T ss_pred HHHHHhcCCCcccCCchHHHHHHH-------HHH-H-HHHHhhcccCCCCEEEEEeCCCCCCCHHHHHHHHHhcCCCCce
Confidence 11010000000 0000000000 000 0 00122345669999999999999999999999988764 478
Q ss_pred EEEecCCCcccccC-CCchHHHHHHHHHHhh
Q 024134 242 VMAIKGADHMAMLS-KPQPLSDCFSQIAHKY 271 (272)
Q Consensus 242 ~~~~~~~gH~~~~~-~p~~~~~~i~~fl~~~ 271 (272)
++++++++|.++.| +++++.+.+.+||++.
T Consensus 357 l~~~~ga~H~l~~e~~~e~v~~~I~~FL~~~ 387 (395)
T PLN02652 357 IKLYDGFLHDLLFEPEREEVGRDIIDWMEKR 387 (395)
T ss_pred EEEECCCeEEeccCCCHHHHHHHHHHHHHHH
Confidence 99999999999887 6899999999999853
No 39
>PLN02511 hydrolase
Probab=99.97 E-value=3.1e-30 Score=201.46 Aligned_cols=250 Identities=12% Similarity=0.065 Sum_probs=149.9
Q ss_pred cCCCeEEEEecCCCcchh-H-HhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhc---CCCcEE
Q 024134 14 KKQKHFVLVHGSNHGAWC-W-YKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLS---ADEKVI 88 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~-~-~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~---~~~~~~ 88 (272)
..+|+||++||+++++.. | ..++..+.++||+|+++|+||||.|+..... .....+++|+.++++++. +..+++
T Consensus 98 ~~~p~vvllHG~~g~s~~~y~~~~~~~~~~~g~~vv~~d~rG~G~s~~~~~~-~~~~~~~~Dl~~~i~~l~~~~~~~~~~ 176 (388)
T PLN02511 98 ADAPVLILLPGLTGGSDDSYVRHMLLRARSKGWRVVVFNSRGCADSPVTTPQ-FYSASFTGDLRQVVDHVAGRYPSANLY 176 (388)
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEEecCCCCCCCCCCcC-EEcCCchHHHHHHHHHHHHHCCCCCEE
Confidence 457899999999776643 4 5677777789999999999999999764333 234677888888888872 236899
Q ss_pred EEEeCcchHHHHHHHhhCccc--eeeeeeeeccCCCCCCCchhhhhhcccCCchhhhhhhhhhccccCCCccchhhhh--
Q 024134 89 LVGHSFGGLSVALAADKFPHK--ISVAIFLTAFMPDTKHQPSYVVERFSESIPREERLDTQYSIIDESNPSRMSILFG-- 164 (272)
Q Consensus 89 lvG~S~Gg~~a~~~a~~~p~~--v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 164 (272)
++||||||.+++.++.++|++ |.++++++++...... ...+.... .......+..............+.
T Consensus 177 lvG~SlGg~i~~~yl~~~~~~~~v~~~v~is~p~~l~~~-----~~~~~~~~--~~~y~~~~~~~l~~~~~~~~~~~~~~ 249 (388)
T PLN02511 177 AAGWSLGANILVNYLGEEGENCPLSGAVSLCNPFDLVIA-----DEDFHKGF--NNVYDKALAKALRKIFAKHALLFEGL 249 (388)
T ss_pred EEEechhHHHHHHHHHhcCCCCCceEEEEECCCcCHHHH-----HHHHhccH--HHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999987 8888888765321000 00000000 000000000000000000000000
Q ss_pred hhHH-HHhhccCCChhHHH-HHHHhccCCccchHHhhhcccccccccCCceeEEEEeCCCCCccHHHH-HHHHhcCCCce
Q 024134 165 HKFL-TLKLYQLSPPEDLE-LAKMLVKPGLLFTDELSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQ-QWMIQNNPVNE 241 (272)
Q Consensus 165 ~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~-~~~~~~~~~~~ 241 (272)
+..+ .............. ...............+...+....+..+++|+|+|+|++|+++|.... ....+..|+++
T Consensus 250 ~~~~~~~~~~~~~~~~~fd~~~t~~~~gf~~~~~yy~~~s~~~~L~~I~vPtLiI~g~dDpi~p~~~~~~~~~~~~p~~~ 329 (388)
T PLN02511 250 GGEYNIPLVANAKTVRDFDDGLTRVSFGFKSVDAYYSNSSSSDSIKHVRVPLLCIQAANDPIAPARGIPREDIKANPNCL 329 (388)
T ss_pred CCccCHHHHHhCCCHHHHHHhhhhhcCCCCCHHHHHHHcCchhhhccCCCCeEEEEcCCCCcCCcccCcHhHHhcCCCEE
Confidence 0000 00000000000000 000000011111111223334455677899999999999999998754 45667789999
Q ss_pred EEEecCCCcccccCCCch------HHHHHHHHHHhh
Q 024134 242 VMAIKGADHMAMLSKPQP------LSDCFSQIAHKY 271 (272)
Q Consensus 242 ~~~~~~~gH~~~~~~p~~------~~~~i~~fl~~~ 271 (272)
+++++++||+.++|+|+. +.+.+.+||+.+
T Consensus 330 l~~~~~gGH~~~~E~p~~~~~~~w~~~~i~~Fl~~~ 365 (388)
T PLN02511 330 LIVTPSGGHLGWVAGPEAPFGAPWTDPVVMEFLEAL 365 (388)
T ss_pred EEECCCcceeccccCCCCCCCCccHHHHHHHHHHHH
Confidence 999999999999999976 489999999754
No 40
>KOG1455 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=99.97 E-value=6.2e-30 Score=182.92 Aligned_cols=240 Identities=16% Similarity=0.118 Sum_probs=160.3
Q ss_pred CCeEEEEecCCCcc-hhHHhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHh-----cCCCcEEE
Q 024134 16 QKHFVLVHGSNHGA-WCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASL-----SADEKVIL 89 (272)
Q Consensus 16 ~~~vv~lhG~~~~~-~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l-----~~~~~~~l 89 (272)
+..|+++||++... ..|..++..|+..||.|+++|++|||.|++-.....+++..++|+.+..+.. ....+..+
T Consensus 54 r~lv~~~HG~g~~~s~~~~~~a~~l~~~g~~v~a~D~~GhG~SdGl~~yi~~~d~~v~D~~~~~~~i~~~~e~~~lp~FL 133 (313)
T KOG1455|consen 54 RGLVFLCHGYGEHSSWRYQSTAKRLAKSGFAVYAIDYEGHGRSDGLHAYVPSFDLVVDDVISFFDSIKEREENKGLPRFL 133 (313)
T ss_pred ceEEEEEcCCcccchhhHHHHHHHHHhCCCeEEEeeccCCCcCCCCcccCCcHHHHHHHHHHHHHHHhhccccCCCCeee
Confidence 44799999998776 7789999999999999999999999999988877789999999999999864 35578999
Q ss_pred EEeCcchHHHHHHHhhCccceeeeeeeeccCCCCCCCc-hhhhhhcccCCchhhhhhhhhhccc-cCCCccchhhhhhhH
Q 024134 90 VGHSFGGLSVALAADKFPHKISVAIFLTAFMPDTKHQP-SYVVERFSESIPREERLDTQYSIID-ESNPSRMSILFGHKF 167 (272)
Q Consensus 90 vG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 167 (272)
+||||||.+++.++.+.|+..+++|+++|......... ......+.. .+...+-.+. .+........+....
T Consensus 134 ~GeSMGGAV~Ll~~~k~p~~w~G~ilvaPmc~i~~~~kp~p~v~~~l~------~l~~liP~wk~vp~~d~~~~~~kdp~ 207 (313)
T KOG1455|consen 134 FGESMGGAVALLIALKDPNFWDGAILVAPMCKISEDTKPHPPVISILT------LLSKLIPTWKIVPTKDIIDVAFKDPE 207 (313)
T ss_pred eecCcchHHHHHHHhhCCcccccceeeecccccCCccCCCcHHHHHHH------HHHHhCCceeecCCccccccccCCHH
Confidence 99999999999999999999999999999865443321 111111100 0000000000 000000011111122
Q ss_pred HHHhhccC----CChhHHHHHHHhccCCccchHHhhhcccccccccCCceeEEEEeCCCCCccHHHHHHHHhcCC--Cce
Q 024134 168 LTLKLYQL----SPPEDLELAKMLVKPGLLFTDELSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNNP--VNE 241 (272)
Q Consensus 168 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~--~~~ 241 (272)
.+...+.. ...........+++.. ......+..+++|.+++||+.|.++.++.++.+.+..+ +.+
T Consensus 208 ~r~~~~~npl~y~g~pRl~T~~ElLr~~---------~~le~~l~~vtvPflilHG~dD~VTDp~~Sk~Lye~A~S~DKT 278 (313)
T KOG1455|consen 208 KRKILRSDPLCYTGKPRLKTAYELLRVT---------ADLEKNLNEVTVPFLILHGTDDKVTDPKVSKELYEKASSSDKT 278 (313)
T ss_pred HHHHhhcCCceecCCccHHHHHHHHHHH---------HHHHHhcccccccEEEEecCCCcccCcHHHHHHHHhccCCCCc
Confidence 22211111 0111111111111111 01112244569999999999999999999999999875 679
Q ss_pred EEEecCCCccccc-CCC---chHHHHHHHHHHh
Q 024134 242 VMAIKGADHMAML-SKP---QPLSDCFSQIAHK 270 (272)
Q Consensus 242 ~~~~~~~gH~~~~-~~p---~~~~~~i~~fl~~ 270 (272)
+.++||.-|.++. |-+ +.|...|.+||++
T Consensus 279 lKlYpGm~H~Ll~gE~~en~e~Vf~DI~~Wl~~ 311 (313)
T KOG1455|consen 279 LKLYPGMWHSLLSGEPDENVEIVFGDIISWLDE 311 (313)
T ss_pred eeccccHHHHhhcCCCchhHHHHHHHHHHHHHh
Confidence 9999999999886 333 4566778888875
No 41
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=99.97 E-value=6.2e-30 Score=228.32 Aligned_cols=241 Identities=16% Similarity=0.208 Sum_probs=154.5
Q ss_pred CCCeEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCCCCCCCCccc-------ccccchhhchHHHHHHHHHhcCCCcE
Q 024134 15 KQKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKI-------QDVRSFYEYNEPLLEILASLSADEKV 87 (272)
Q Consensus 15 ~~~~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~-------~~~~~~~~~~~~~~~~i~~l~~~~~~ 87 (272)
++++|||+||++++...|..+++.|.+ +|+|+++|+||||.|.... ...++++++++++.++++++ +.+++
T Consensus 1370 ~~~~vVllHG~~~s~~~w~~~~~~L~~-~~rVi~~Dl~G~G~S~~~~~~~~~~~~~~~si~~~a~~l~~ll~~l-~~~~v 1447 (1655)
T PLN02980 1370 EGSVVLFLHGFLGTGEDWIPIMKAISG-SARCISIDLPGHGGSKIQNHAKETQTEPTLSVELVADLLYKLIEHI-TPGKV 1447 (1655)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC-CCEEEEEcCCCCCCCCCccccccccccccCCHHHHHHHHHHHHHHh-CCCCE
Confidence 468999999999999999999999975 5999999999999997543 12468899999999999999 88999
Q ss_pred EEEEeCcchHHHHHHHhhCccceeeeeeeeccCCCCCCCchhhhhhcccCCchhhhhhhhhhccccCCCccchhhhhhhH
Q 024134 88 ILVGHSFGGLSVALAADKFPHKISVAIFLTAFMPDTKHQPSYVVERFSESIPREERLDTQYSIIDESNPSRMSILFGHKF 167 (272)
Q Consensus 88 ~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (272)
+++||||||.+++.++.++|++|+++|++++........ ......... ......... .. ...+...+
T Consensus 1448 ~LvGhSmGG~iAl~~A~~~P~~V~~lVlis~~p~~~~~~-~~~~~~~~~----~~~~~~l~~-~g-------~~~~~~~~ 1514 (1655)
T PLN02980 1448 TLVGYSMGARIALYMALRFSDKIEGAVIISGSPGLKDEV-ARKIRSAKD----DSRARMLID-HG-------LEIFLENW 1514 (1655)
T ss_pred EEEEECHHHHHHHHHHHhChHhhCEEEEECCCCccCchH-HHHHHhhhh----hHHHHHHHh-hh-------HHHHHHHh
Confidence 999999999999999999999999999998653211110 000000000 000000000 00 00000000
Q ss_pred HHHhhcc-C-CChhHHHHHHHhc-cCCc-cc---hHHhh---hcccccccccCCceeEEEEeCCCCCccHHHHHHHHhcC
Q 024134 168 LTLKLYQ-L-SPPEDLELAKMLV-KPGL-LF---TDELS---KANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNN 237 (272)
Q Consensus 168 ~~~~~~~-~-~~~~~~~~~~~~~-~~~~-~~---~~~~~---~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~ 237 (272)
+...... . ............. .... .. ...+. ..+....+..+++|+|+|+|++|..++ ..++++.+.+
T Consensus 1515 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~dl~~~L~~I~~PtLlI~Ge~D~~~~-~~a~~~~~~i 1593 (1655)
T PLN02980 1515 YSGELWKSLRNHPHFNKIVASRLLHKDVPSLAKLLSDLSIGRQPSLWEDLKQCDTPLLLVVGEKDVKFK-QIAQKMYREI 1593 (1655)
T ss_pred ccHHHhhhhccCHHHHHHHHHHHhcCCHHHHHHHHHHhhhcccchHHHHHhhCCCCEEEEEECCCCccH-HHHHHHHHHc
Confidence 0000000 0 0000000000000 0000 00 00110 111123356679999999999999875 5666677766
Q ss_pred CC------------ceEEEecCCCcccccCCCchHHHHHHHHHHhh
Q 024134 238 PV------------NEVMAIKGADHMAMLSKPQPLSDCFSQIAHKY 271 (272)
Q Consensus 238 ~~------------~~~~~~~~~gH~~~~~~p~~~~~~i~~fl~~~ 271 (272)
++ +++++++++||++++|+|+++++.|.+||++.
T Consensus 1594 ~~a~~~~~~~~~~~a~lvvI~~aGH~~~lE~Pe~f~~~I~~FL~~~ 1639 (1655)
T PLN02980 1594 GKSKESGNDKGKEIIEIVEIPNCGHAVHLENPLPVIRALRKFLTRL 1639 (1655)
T ss_pred cccccccccccccceEEEEECCCCCchHHHCHHHHHHHHHHHHHhc
Confidence 65 48999999999999999999999999999864
No 42
>COG1647 Esterase/lipase [General function prediction only]
Probab=99.97 E-value=2.9e-29 Score=170.84 Aligned_cols=224 Identities=15% Similarity=0.141 Sum_probs=157.0
Q ss_pred cCCCeEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHh--cCCCcEEEEE
Q 024134 14 KKQKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASL--SADEKVILVG 91 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l--~~~~~~~lvG 91 (272)
+++..|+||||+.+++...+.+.+.|.++||.|.+|.+||||..+...-. ++.++|.+++.+..++| .+.+.|.++|
T Consensus 13 ~G~~AVLllHGFTGt~~Dvr~Lgr~L~e~GyTv~aP~ypGHG~~~e~fl~-t~~~DW~~~v~d~Y~~L~~~gy~eI~v~G 91 (243)
T COG1647 13 GGNRAVLLLHGFTGTPRDVRMLGRYLNENGYTVYAPRYPGHGTLPEDFLK-TTPRDWWEDVEDGYRDLKEAGYDEIAVVG 91 (243)
T ss_pred cCCEEEEEEeccCCCcHHHHHHHHHHHHCCceEecCCCCCCCCCHHHHhc-CCHHHHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 34489999999999999999999999999999999999999998654433 68899999888888877 3678999999
Q ss_pred eCcchHHHHHHHhhCccceeeeeeeeccCCCCCCCchhhhhhcccCCchhhhhhhhhhccccCCCccchhhhhhhHHHHh
Q 024134 92 HSFGGLSVALAADKFPHKISVAIFLTAFMPDTKHQPSYVVERFSESIPREERLDTQYSIIDESNPSRMSILFGHKFLTLK 171 (272)
Q Consensus 92 ~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (272)
.||||.+++.+|..+| ++++|.++++...... ....+.+.. +... ... ....+.+.+...
T Consensus 92 lSmGGv~alkla~~~p--~K~iv~m~a~~~~k~~--~~iie~~l~------y~~~-~kk---------~e~k~~e~~~~e 151 (243)
T COG1647 92 LSMGGVFALKLAYHYP--PKKIVPMCAPVNVKSW--RIIIEGLLE------YFRN-AKK---------YEGKDQEQIDKE 151 (243)
T ss_pred ecchhHHHHHHHhhCC--ccceeeecCCcccccc--hhhhHHHHH------HHHH-hhh---------ccCCCHHHHHHH
Confidence 9999999999999998 8999999986442221 111122110 1100 000 001112222222
Q ss_pred hccCC--ChhHHHHHHHhccCCccchHHhhhcccccccccCCceeEEEEeCCCCCccHHHHHHHHhcCC--CceEEEecC
Q 024134 172 LYQLS--PPEDLELAKMLVKPGLLFTDELSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNNP--VNEVMAIKG 247 (272)
Q Consensus 172 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~--~~~~~~~~~ 247 (272)
+.... +.........+. .........|..|+++++|.+|.++|.+.+..+..... ..++.++++
T Consensus 152 ~~~~~~~~~~~~~~~~~~i------------~~~~~~~~~I~~pt~vvq~~~D~mv~~~sA~~Iy~~v~s~~KeL~~~e~ 219 (243)
T COG1647 152 MKSYKDTPMTTTAQLKKLI------------KDARRSLDKIYSPTLVVQGRQDEMVPAESANFIYDHVESDDKELKWLEG 219 (243)
T ss_pred HHHhhcchHHHHHHHHHHH------------HHHHhhhhhcccchhheecccCCCCCHHHHHHHHHhccCCcceeEEEcc
Confidence 21111 111111111111 11222345568999999999999999999999888763 569999999
Q ss_pred CCcccccCC-CchHHHHHHHHHHh
Q 024134 248 ADHMAMLSK-PQPLSDCFSQIAHK 270 (272)
Q Consensus 248 ~gH~~~~~~-p~~~~~~i~~fl~~ 270 (272)
+||.+..+. .+.+.+.|..||+.
T Consensus 220 SgHVIt~D~Erd~v~e~V~~FL~~ 243 (243)
T COG1647 220 SGHVITLDKERDQVEEDVITFLEK 243 (243)
T ss_pred CCceeecchhHHHHHHHHHHHhhC
Confidence 999988754 58899999999973
No 43
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=99.97 E-value=6.9e-29 Score=189.33 Aligned_cols=105 Identities=13% Similarity=0.193 Sum_probs=87.6
Q ss_pred CCCeEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCCCCCCCCcccc-cccchhhchHHHHHHHHHhcCCCcEEEEEeC
Q 024134 15 KQKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQ-DVRSFYEYNEPLLEILASLSADEKVILVGHS 93 (272)
Q Consensus 15 ~~~~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~-~~~~~~~~~~~~~~~i~~l~~~~~~~lvG~S 93 (272)
++++|||+||++++...+ .+...+...+|+|+++|+||||.|+.+.. ..++.+++++++..+++++ +.++++++|||
T Consensus 26 ~~~~lvllHG~~~~~~~~-~~~~~~~~~~~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~dl~~l~~~l-~~~~~~lvG~S 103 (306)
T TIGR01249 26 DGKPVVFLHGGPGSGTDP-GCRRFFDPETYRIVLFDQRGCGKSTPHACLEENTTWDLVADIEKLREKL-GIKNWLVFGGS 103 (306)
T ss_pred CCCEEEEECCCCCCCCCH-HHHhccCccCCEEEEECCCCCCCCCCCCCcccCCHHHHHHHHHHHHHHc-CCCCEEEEEEC
Confidence 367899999987776543 34444545679999999999999986542 2357789999999999999 88899999999
Q ss_pred cchHHHHHHHhhCccceeeeeeeeccCC
Q 024134 94 FGGLSVALAADKFPHKISVAIFLTAFMP 121 (272)
Q Consensus 94 ~Gg~~a~~~a~~~p~~v~~lvl~~~~~~ 121 (272)
|||.+++.++.++|++|+++|++++...
T Consensus 104 ~GG~ia~~~a~~~p~~v~~lvl~~~~~~ 131 (306)
T TIGR01249 104 WGSTLALAYAQTHPEVVTGLVLRGIFLL 131 (306)
T ss_pred HHHHHHHHHHHHChHhhhhheeeccccC
Confidence 9999999999999999999999987643
No 44
>KOG2382 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=99.97 E-value=9.4e-30 Score=184.97 Aligned_cols=244 Identities=18% Similarity=0.195 Sum_probs=162.2
Q ss_pred cCCCeEEEEecCCCcchhHHhhHHHHHhC-CCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhc---CCCcEEE
Q 024134 14 KKQKHFVLVHGSNHGAWCWYKVKPRLEAA-GHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLS---ADEKVIL 89 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~~~~~~~~l~~~-g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~---~~~~~~l 89 (272)
...|+++++||+.++...|+.+...|+.+ +..++++|.|.||.|+.... .+.+++++|+..+|+... ...++++
T Consensus 50 ~~~Pp~i~lHGl~GS~~Nw~sv~k~Ls~~l~~~v~~vd~RnHG~Sp~~~~--h~~~~ma~dv~~Fi~~v~~~~~~~~~~l 127 (315)
T KOG2382|consen 50 ERAPPAIILHGLLGSKENWRSVAKNLSRKLGRDVYAVDVRNHGSSPKITV--HNYEAMAEDVKLFIDGVGGSTRLDPVVL 127 (315)
T ss_pred CCCCceEEecccccCCCCHHHHHHHhcccccCceEEEecccCCCCccccc--cCHHHHHHHHHHHHHHcccccccCCcee
Confidence 46799999999999999999999999854 67899999999999987665 579999999999999883 3678999
Q ss_pred EEeCcch-HHHHHHHhhCccceeeeeeeeccCCCCCCCchhhhhhcccCCchh---------hhhhhhhhccccCCCccc
Q 024134 90 VGHSFGG-LSVALAADKFPHKISVAIFLTAFMPDTKHQPSYVVERFSESIPRE---------ERLDTQYSIIDESNPSRM 159 (272)
Q Consensus 90 vG~S~Gg-~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~ 159 (272)
+|||||| .+++..+...|+.+..+|+++-..............-+....... .+....+....
T Consensus 128 ~GHsmGG~~~~m~~t~~~p~~~~rliv~D~sP~~~~~~~~e~~e~i~~m~~~d~~~~~~~~rke~~~~l~~~~------- 200 (315)
T KOG2382|consen 128 LGHSMGGVKVAMAETLKKPDLIERLIVEDISPGGVGRSYGEYRELIKAMIQLDLSIGVSRGRKEALKSLIEVG------- 200 (315)
T ss_pred cccCcchHHHHHHHHHhcCcccceeEEEecCCccCCcccchHHHHHHHHHhccccccccccHHHHHHHHHHHh-------
Confidence 9999999 888888889999999999998653322222221111111100000 00000000000
Q ss_pred hhhhhhhHHHHhhccCCChh------HHHHHHHhccCCccchHHhhhcccccccccCCceeEEEEeCCCCCccHHHHHHH
Q 024134 160 SILFGHKFLTLKLYQLSPPE------DLELAKMLVKPGLLFTDELSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWM 233 (272)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~ 233 (272)
.......++...+....... +......++.. ............ .....||+++.|.++..++.+...++
T Consensus 201 ~d~~~~~fi~~nl~~~~~~~s~~w~~nl~~i~~~~~~----~~~~s~~~~l~~-~~~~~pvlfi~g~~S~fv~~~~~~~~ 275 (315)
T KOG2382|consen 201 FDNLVRQFILTNLKKSPSDGSFLWRVNLDSIASLLDE----YEILSYWADLED-GPYTGPVLFIKGLQSKFVPDEHYPRM 275 (315)
T ss_pred cchHHHHHHHHhcCcCCCCCceEEEeCHHHHHHHHHH----HHhhcccccccc-cccccceeEEecCCCCCcChhHHHHH
Confidence 00000111111111100000 00001111000 000111111112 33378999999999999999999999
Q ss_pred HhcCCCceEEEecCCCcccccCCCchHHHHHHHHHHhh
Q 024134 234 IQNNPVNEVMAIKGADHMAMLSKPQPLSDCFSQIAHKY 271 (272)
Q Consensus 234 ~~~~~~~~~~~~~~~gH~~~~~~p~~~~~~i~~fl~~~ 271 (272)
.+.+|+++++.++++||+.+.|+|+++.+.|.+|+.+.
T Consensus 276 ~~~fp~~e~~~ld~aGHwVh~E~P~~~~~~i~~Fl~~~ 313 (315)
T KOG2382|consen 276 EKIFPNVEVHELDEAGHWVHLEKPEEFIESISEFLEEP 313 (315)
T ss_pred HHhccchheeecccCCceeecCCHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999764
No 45
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=99.96 E-value=1.6e-28 Score=188.34 Aligned_cols=244 Identities=13% Similarity=0.096 Sum_probs=148.6
Q ss_pred hhhhccCCCeEEEEecCCCcch-hH-------------------------HhhHHHHHhCCCeEEEEcCCCCCCCCccc-
Q 024134 9 KMTEAKKQKHFVLVHGSNHGAW-CW-------------------------YKVKPRLEAAGHRVTAMDLAASGINMKKI- 61 (272)
Q Consensus 9 ~~~~~~~~~~vv~lhG~~~~~~-~~-------------------------~~~~~~l~~~g~~v~~~d~~G~G~s~~~~- 61 (272)
.|.....+.+|+++||++.+.. .| ..+++.|.++||+|+++|+||||.|....
T Consensus 14 ~~~~~~~kg~v~i~HG~~eh~~~~~~~~~~~~~~~~~~~~~~~~ry~~y~~~~~~~l~~~G~~V~~~D~rGHG~S~~~~~ 93 (332)
T TIGR01607 14 SWIVKNAIGIIVLIHGLKSHLRLQFLKINAKIVNNDRAVLIDTDNYYIYKDSWIENFNKNGYSVYGLDLQGHGESDGLQN 93 (332)
T ss_pred eeeccCCeEEEEEECCCchhhhhhhhhcCcccCCCCeeEEEcCCcceEeeHHHHHHHHHCCCcEEEecccccCCCccccc
Confidence 3444455679999999998885 11 46789999999999999999999997542
Q ss_pred --ccccchhhchHHHHHHHHHhc----------------------C-CCcEEEEEeCcchHHHHHHHhhCcc--------
Q 024134 62 --QDVRSFYEYNEPLLEILASLS----------------------A-DEKVILVGHSFGGLSVALAADKFPH-------- 108 (272)
Q Consensus 62 --~~~~~~~~~~~~~~~~i~~l~----------------------~-~~~~~lvG~S~Gg~~a~~~a~~~p~-------- 108 (272)
....+++++++|+.++++.+. . ..|++++||||||.+++.++.++++
T Consensus 94 ~~g~~~~~~~~v~Dl~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~GhSmGg~i~~~~~~~~~~~~~~~~~~ 173 (332)
T TIGR01607 94 LRGHINCFDDLVYDVIQYMNRINDSIILENETKSDDESYDIVNTKENRLPMYIIGLSMGGNIALRLLELLGKSNENNDKL 173 (332)
T ss_pred cccchhhHHHHHHHHHHHHHHhhhhhccccccccccccccccccccCCCceeEeeccCccHHHHHHHHHhcccccccccc
Confidence 222488999999999998641 1 4589999999999999999876643
Q ss_pred ceeeeeeeeccCCCCCCC------chhhhhhcccCCchhhhhhhhhhccccCCCccchhhhhhhHHHHhhcc----CCCh
Q 024134 109 KISVAIFLTAFMPDTKHQ------PSYVVERFSESIPREERLDTQYSIIDESNPSRMSILFGHKFLTLKLYQ----LSPP 178 (272)
Q Consensus 109 ~v~~lvl~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 178 (272)
.++++|+++|........ .......+.. ............... ....++.. .+.... ....
T Consensus 174 ~i~g~i~~s~~~~i~~~~~~~~~~~~~~~~~l~~------~~~~~~p~~~~~~~~--~~~~~~~~-~~~~~~Dp~~~~~~ 244 (332)
T TIGR01607 174 NIKGCISLSGMISIKSVGSDDSFKFKYFYLPVMN------FMSRVFPTFRISKKI--RYEKSPYV-NDIIKFDKFRYDGG 244 (332)
T ss_pred ccceEEEeccceEEecccCCCcchhhhhHHHHHH------HHHHHCCcccccCcc--ccccChhh-hhHHhcCccccCCc
Confidence 589999888864221100 0000000000 000000000000000 00000010 010000 0000
Q ss_pred hHHHHHHHhccCCccchHHhhhcccccccccC--CceeEEEEeCCCCCccHHHHHHHHhcC--CCceEEEecCCCccccc
Q 024134 179 EDLELAKMLVKPGLLFTDELSKANEFSNEGYG--SVKRDFVGSDKDNCIPKEFQQWMIQNN--PVNEVMAIKGADHMAML 254 (272)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~P~l~i~g~~D~~~~~~~~~~~~~~~--~~~~~~~~~~~gH~~~~ 254 (272)
........+... .... ......+ ++|+|+++|++|.+++++.++.+.+.. ++.+++++++++|.++.
T Consensus 245 ~s~~~~~~l~~~-------~~~~--~~~~~~i~~~~P~Lii~G~~D~vv~~~~~~~~~~~~~~~~~~l~~~~g~~H~i~~ 315 (332)
T TIGR01607 245 ITFNLASELIKA-------TDTL--DCDIDYIPKDIPILFIHSKGDCVCSYEGTVSFYNKLSISNKELHTLEDMDHVITI 315 (332)
T ss_pred ccHHHHHHHHHH-------HHHH--HhhHhhCCCCCCEEEEEeCCCCccCHHHHHHHHHhccCCCcEEEEECCCCCCCcc
Confidence 011111111110 0000 0012222 789999999999999999988887665 57899999999999999
Q ss_pred CC-CchHHHHHHHHHHh
Q 024134 255 SK-PQPLSDCFSQIAHK 270 (272)
Q Consensus 255 ~~-p~~~~~~i~~fl~~ 270 (272)
|. ++++.+.|.+||++
T Consensus 316 E~~~~~v~~~i~~wL~~ 332 (332)
T TIGR01607 316 EPGNEEVLKKIIEWISN 332 (332)
T ss_pred CCCHHHHHHHHHHHhhC
Confidence 85 58899999999863
No 46
>PRK05855 short chain dehydrogenase; Validated
Probab=99.96 E-value=1.1e-28 Score=205.06 Aligned_cols=251 Identities=16% Similarity=0.189 Sum_probs=148.3
Q ss_pred cCCCeEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCCCCCCCCccc-ccccchhhchHHHHHHHHHhcCCC-cEEEEE
Q 024134 14 KKQKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKI-QDVRSFYEYNEPLLEILASLSADE-KVILVG 91 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~-~~~~~~~~~~~~~~~~i~~l~~~~-~~~lvG 91 (272)
.++|+|||+||++++...|..+.+.|. ++|+|+++|+||||.|+.+. ...++++++++|+.++++++ +.. +++++|
T Consensus 23 ~~~~~ivllHG~~~~~~~w~~~~~~L~-~~~~Vi~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~i~~l-~~~~~~~lvG 100 (582)
T PRK05855 23 PDRPTVVLVHGYPDNHEVWDGVAPLLA-DRFRVVAYDVRGAGRSSAPKRTAAYTLARLADDFAAVIDAV-SPDRPVHLLA 100 (582)
T ss_pred CCCCeEEEEcCCCchHHHHHHHHHHhh-cceEEEEecCCCCCCCCCCCcccccCHHHHHHHHHHHHHHh-CCCCcEEEEe
Confidence 357899999999999999999999994 67999999999999998644 23478999999999999999 544 599999
Q ss_pred eCcchHHHHHHHhh--CccceeeeeeeeccCCCCCCCchhhhhhcccCCchhhh---hhhhhh-----ccccCCCccc--
Q 024134 92 HSFGGLSVALAADK--FPHKISVAIFLTAFMPDTKHQPSYVVERFSESIPREER---LDTQYS-----IIDESNPSRM-- 159 (272)
Q Consensus 92 ~S~Gg~~a~~~a~~--~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-----~~~~~~~~~~-- 159 (272)
|||||.+++.++.+ .++++..++.++++... ........... ......+ ...... ....+.....
T Consensus 101 hS~Gg~~a~~~a~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (582)
T PRK05855 101 HDWGSIQGWEAVTRPRAAGRIASFTSVSGPSLD--HVGFWLRSGLR-RPTPRRLARALGQLLRSWYIYLFHLPVLPELLW 177 (582)
T ss_pred cChHHHHHHHHHhCccchhhhhhheeccCCchH--HHHHHHhhccc-ccchhhhhHHHHHHhhhHHHHHHhCCCCcHHHh
Confidence 99999999888865 23445544444432110 00000000000 0000000 000000 0000000000
Q ss_pred hhhhhhhHHHHhhc--cCCChhHHHHHHH---hccCCccchHHhhhcccccccccCCceeEEEEeCCCCCccHHHHHHHH
Q 024134 160 SILFGHKFLTLKLY--QLSPPEDLELAKM---LVKPGLLFTDELSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMI 234 (272)
Q Consensus 160 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~ 234 (272)
...... ....... ............. .......+...............+++|+++|+|++|.++|+...+.+.
T Consensus 178 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~v~~~~~~~~~ 256 (582)
T PRK05855 178 RLGLGR-AWPRLLRRVEGTPVDPIPTQTTLSDGAHGVKLYRANMIRSLSRPRERYTDVPVQLIVPTGDPYVRPALYDDLS 256 (582)
T ss_pred ccchhh-HHHHhhhhccCCCcchhhhhhhhccccchHHHHHhhhhhhhccCccCCccCceEEEEeCCCcccCHHHhcccc
Confidence 000000 0000000 0000000000000 000000000000011111123446899999999999999999999998
Q ss_pred hcCCCceEEEecCCCcccccCCCchHHHHHHHHHHhh
Q 024134 235 QNNPVNEVMAIKGADHMAMLSKPQPLSDCFSQIAHKY 271 (272)
Q Consensus 235 ~~~~~~~~~~~~~~gH~~~~~~p~~~~~~i~~fl~~~ 271 (272)
+..++.++++++ +||++++|+|+++.+.|.+|+++.
T Consensus 257 ~~~~~~~~~~~~-~gH~~~~e~p~~~~~~i~~fl~~~ 292 (582)
T PRK05855 257 RWVPRLWRREIK-AGHWLPMSHPQVLAAAVAEFVDAV 292 (582)
T ss_pred ccCCcceEEEcc-CCCcchhhChhHHHHHHHHHHHhc
Confidence 888888888887 799999999999999999999864
No 47
>PRK10985 putative hydrolase; Provisional
Probab=99.96 E-value=1.9e-27 Score=182.40 Aligned_cols=244 Identities=13% Similarity=0.052 Sum_probs=141.4
Q ss_pred CCCeEEEEecCCCcchh--HHhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHh---cCCCcEEE
Q 024134 15 KQKHFVLVHGSNHGAWC--WYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASL---SADEKVIL 89 (272)
Q Consensus 15 ~~~~vv~lhG~~~~~~~--~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l---~~~~~~~l 89 (272)
.+|+||++||++++... +..+++.|.++||+|+++|+||||.++......+.. ...+|+..+++.+ .+..++++
T Consensus 57 ~~p~vll~HG~~g~~~~~~~~~~~~~l~~~G~~v~~~d~rG~g~~~~~~~~~~~~-~~~~D~~~~i~~l~~~~~~~~~~~ 135 (324)
T PRK10985 57 HKPRLVLFHGLEGSFNSPYAHGLLEAAQKRGWLGVVMHFRGCSGEPNRLHRIYHS-GETEDARFFLRWLQREFGHVPTAA 135 (324)
T ss_pred CCCEEEEeCCCCCCCcCHHHHHHHHHHHHCCCEEEEEeCCCCCCCccCCcceECC-CchHHHHHHHHHHHHhCCCCCEEE
Confidence 46899999999877543 467889999999999999999999875432221221 2244444444333 15678999
Q ss_pred EEeCcchHHHHHHHhhCccc--eeeeeeeeccCCCCCCCchhhhhhcccCCchhhhhhhhhh-----ccccCCCccchhh
Q 024134 90 VGHSFGGLSVALAADKFPHK--ISVAIFLTAFMPDTKHQPSYVVERFSESIPREERLDTQYS-----IIDESNPSRMSIL 162 (272)
Q Consensus 90 vG~S~Gg~~a~~~a~~~p~~--v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 162 (272)
+||||||.+++.++.++++. +.++|+++++....... .......... ....+...+. ....... ...
T Consensus 136 vG~S~GG~i~~~~~~~~~~~~~~~~~v~i~~p~~~~~~~--~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~---~~~ 209 (324)
T PRK10985 136 VGYSLGGNMLACLLAKEGDDLPLDAAVIVSAPLMLEACS--YRMEQGFSRV-YQRYLLNLLKANAARKLAAYPG---TLP 209 (324)
T ss_pred EEecchHHHHHHHHHhhCCCCCccEEEEEcCCCCHHHHH--HHHhhhHHHH-HHHHHHHHHHHHHHHHHHhccc---ccc
Confidence 99999999888888777654 88999998864321100 0000000000 0000000000 0000000 000
Q ss_pred hhhhHHHHhhccCCChhHHHHHHHhccC---CccchHHhhhcccccccccCCceeEEEEeCCCCCccHHHHHHHHhcCCC
Q 024134 163 FGHKFLTLKLYQLSPPEDLELAKMLVKP---GLLFTDELSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNNPV 239 (272)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~ 239 (272)
.+.+. ........ ++......+ .....+.+...........+++|+++|+|++|++++++....+.+..++
T Consensus 210 ~~~~~----~~~~~~~~--~fd~~~~~~~~g~~~~~~~y~~~~~~~~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~ 283 (324)
T PRK10985 210 INLAQ----LKSVRRLR--EFDDLITARIHGFADAIDYYRQCSALPLLNQIRKPTLIIHAKDDPFMTHEVIPKPESLPPN 283 (324)
T ss_pred CCHHH----HhcCCcHH--HHhhhheeccCCCCCHHHHHHHCChHHHHhCCCCCEEEEecCCCCCCChhhChHHHHhCCC
Confidence 00000 00000000 000011111 1111222333333444667799999999999999999888877778889
Q ss_pred ceEEEecCCCcccccCCC-----chHHHHHHHHHHhh
Q 024134 240 NEVMAIKGADHMAMLSKP-----QPLSDCFSQIAHKY 271 (272)
Q Consensus 240 ~~~~~~~~~gH~~~~~~p-----~~~~~~i~~fl~~~ 271 (272)
+++++++++||+.+++.. ....+.+.+|++.+
T Consensus 284 ~~~~~~~~~GH~~~~~g~~~~~~~w~~~~~~~~~~~~ 320 (324)
T PRK10985 284 VEYQLTEHGGHVGFVGGTLLKPQMWLEQRIPDWLTTY 320 (324)
T ss_pred eEEEECCCCCceeeCCCCCCCCCccHHHHHHHHHHHh
Confidence 999999999999998742 35667788888654
No 48
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=99.95 E-value=1.8e-26 Score=181.00 Aligned_cols=217 Identities=13% Similarity=0.095 Sum_probs=139.1
Q ss_pred CCCeEEEEecCCCcc-hhHHhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhc--CCCcEEEEE
Q 024134 15 KQKHFVLVHGSNHGA-WCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLS--ADEKVILVG 91 (272)
Q Consensus 15 ~~~~vv~lhG~~~~~-~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~--~~~~~~lvG 91 (272)
..|+||+.||+++.. ..|..+.+.|+++||.|+++|+||+|.|...... .+.......+.+.+.... +.+++.++|
T Consensus 193 ~~P~Vli~gG~~~~~~~~~~~~~~~La~~Gy~vl~~D~pG~G~s~~~~~~-~d~~~~~~avld~l~~~~~vd~~ri~l~G 271 (414)
T PRK05077 193 PFPTVLVCGGLDSLQTDYYRLFRDYLAPRGIAMLTIDMPSVGFSSKWKLT-QDSSLLHQAVLNALPNVPWVDHTRVAAFG 271 (414)
T ss_pred CccEEEEeCCcccchhhhHHHHHHHHHhCCCEEEEECCCCCCCCCCCCcc-ccHHHHHHHHHHHHHhCcccCcccEEEEE
Confidence 456666666666553 5688889999999999999999999999653211 233344455555555442 457899999
Q ss_pred eCcchHHHHHHHhhCccceeeeeeeeccCCCCCCCchhhhhhcccCCchhhhhhhhhhccccCCCccchhhhhhhHHHHh
Q 024134 92 HSFGGLSVALAADKFPHKISVAIFLTAFMPDTKHQPSYVVERFSESIPREERLDTQYSIIDESNPSRMSILFGHKFLTLK 171 (272)
Q Consensus 92 ~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (272)
|||||.+++.+|..+|++|+++|+++++......... ..... . ... ...+...
T Consensus 272 ~S~GG~~Al~~A~~~p~ri~a~V~~~~~~~~~~~~~~-~~~~~----p--~~~--------------------~~~la~~ 324 (414)
T PRK05077 272 FRFGANVAVRLAYLEPPRLKAVACLGPVVHTLLTDPK-RQQQV----P--EMY--------------------LDVLASR 324 (414)
T ss_pred EChHHHHHHHHHHhCCcCceEEEEECCccchhhcchh-hhhhc----h--HHH--------------------HHHHHHH
Confidence 9999999999999999999999999887431111000 00000 0 000 0000000
Q ss_pred hccCCChhHHHHHHHhccCCccchHHhhhcccccccccCCceeEEEEeCCCCCccHHHHHHHHhcCCCceEEEecCCCcc
Q 024134 172 LYQLSPPEDLELAKMLVKPGLLFTDELSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNNPVNEVMAIKGADHM 251 (272)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~ 251 (272)
+. ............+ .... +...... ...+++|+|+|+|++|.++|++.++.+.+..++.++++++++
T Consensus 325 lg-~~~~~~~~l~~~l-~~~s-----l~~~~~l--~~~i~~PvLiI~G~~D~ivP~~~a~~l~~~~~~~~l~~i~~~--- 392 (414)
T PRK05077 325 LG-MHDASDEALRVEL-NRYS-----LKVQGLL--GRRCPTPMLSGYWKNDPFSPEEDSRLIASSSADGKLLEIPFK--- 392 (414)
T ss_pred hC-CCCCChHHHHHHh-hhcc-----chhhhhh--ccCCCCcEEEEecCCCCCCCHHHHHHHHHhCCCCeEEEccCC---
Confidence 00 0000000011100 0000 0000000 134689999999999999999999999999999999999976
Q ss_pred cccCCCchHHHHHHHHHHhh
Q 024134 252 AMLSKPQPLSDCFSQIAHKY 271 (272)
Q Consensus 252 ~~~~~p~~~~~~i~~fl~~~ 271 (272)
++.+.++++.+.+.+||++.
T Consensus 393 ~~~e~~~~~~~~i~~wL~~~ 412 (414)
T PRK05077 393 PVYRNFDKALQEISDWLEDR 412 (414)
T ss_pred CccCCHHHHHHHHHHHHHHH
Confidence 45688999999999999864
No 49
>KOG2984 consensus Predicted hydrolase [General function prediction only]
Probab=99.95 E-value=1.2e-28 Score=165.20 Aligned_cols=230 Identities=11% Similarity=0.021 Sum_probs=157.7
Q ss_pred CeEEEEecCCCcc-hhHHhhHHHHHhC-CCeEEEEcCCCCCCCCccccc--ccchhhchHHHHHHHHHhcCCCcEEEEEe
Q 024134 17 KHFVLVHGSNHGA-WCWYKVKPRLEAA-GHRVTAMDLAASGINMKKIQD--VRSFYEYNEPLLEILASLSADEKVILVGH 92 (272)
Q Consensus 17 ~~vv~lhG~~~~~-~~~~~~~~~l~~~-g~~v~~~d~~G~G~s~~~~~~--~~~~~~~~~~~~~~i~~l~~~~~~~lvG~ 92 (272)
..|++++|.-++. ..|.+.+..|-+. -+.|+++|.||+|.|.+|... ..-+..-+++..++++.| ..+++.++||
T Consensus 43 ~~iLlipGalGs~~tDf~pql~~l~k~l~~TivawDPpGYG~SrPP~Rkf~~~ff~~Da~~avdLM~aL-k~~~fsvlGW 121 (277)
T KOG2984|consen 43 NYILLIPGALGSYKTDFPPQLLSLFKPLQVTIVAWDPPGYGTSRPPERKFEVQFFMKDAEYAVDLMEAL-KLEPFSVLGW 121 (277)
T ss_pred ceeEecccccccccccCCHHHHhcCCCCceEEEEECCCCCCCCCCCcccchHHHHHHhHHHHHHHHHHh-CCCCeeEeee
Confidence 4789999986555 4587777666543 289999999999999877653 224455677888899999 8999999999
Q ss_pred CcchHHHHHHHhhCccceeeeeeeeccCCCCCCCchhhhhhcccCCchhhhhhhhhhccccCCCccchhhhhhhHHHHhh
Q 024134 93 SFGGLSVALAADKFPHKISVAIFLTAFMPDTKHQPSYVVERFSESIPREERLDTQYSIIDESNPSRMSILFGHKFLTLKL 172 (272)
Q Consensus 93 S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (272)
|=||..++..|+++++.|.++|..++........ ......+ .....|...... +....+.++.++...
T Consensus 122 SdGgiTalivAak~~e~v~rmiiwga~ayvn~~~-~ma~kgi---Rdv~kWs~r~R~--------P~e~~Yg~e~f~~~w 189 (277)
T KOG2984|consen 122 SDGGITALIVAAKGKEKVNRMIIWGAAAYVNHLG-AMAFKGI---RDVNKWSARGRQ--------PYEDHYGPETFRTQW 189 (277)
T ss_pred cCCCeEEEEeeccChhhhhhheeecccceecchh-HHHHhch---HHHhhhhhhhcc--------hHHHhcCHHHHHHHH
Confidence 9999999999999999999999998764322111 0111111 111122211111 112222333333322
Q ss_pred ccCCChhHHHHHHHhccCCccchHHhhhcccccccccCCceeEEEEeCCCCCccHHHHHHHHhcCCCceEEEecCCCccc
Q 024134 173 YQLSPPEDLELAKMLVKPGLLFTDELSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNNPVNEVMAIKGADHMA 252 (272)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~ 252 (272)
.... +....+.... ...-....+.+++||++|++|++|++++...+..+....+.+++.++|.++|.+
T Consensus 190 a~wv-----D~v~qf~~~~-------dG~fCr~~lp~vkcPtli~hG~kDp~~~~~hv~fi~~~~~~a~~~~~peGkHn~ 257 (277)
T KOG2984|consen 190 AAWV-----DVVDQFHSFC-------DGRFCRLVLPQVKCPTLIMHGGKDPFCGDPHVCFIPVLKSLAKVEIHPEGKHNF 257 (277)
T ss_pred HHHH-----HHHHHHhhcC-------CCchHhhhcccccCCeeEeeCCcCCCCCCCCccchhhhcccceEEEccCCCcce
Confidence 1110 1111111000 001122335667999999999999999999999999999999999999999999
Q ss_pred ccCCCchHHHHHHHHHHhh
Q 024134 253 MLSKPQPLSDCFSQIAHKY 271 (272)
Q Consensus 253 ~~~~p~~~~~~i~~fl~~~ 271 (272)
++..+++|+..+.+||++.
T Consensus 258 hLrya~eFnklv~dFl~~~ 276 (277)
T KOG2984|consen 258 HLRYAKEFNKLVLDFLKST 276 (277)
T ss_pred eeechHHHHHHHHHHHhcc
Confidence 9999999999999999874
No 50
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=99.95 E-value=2e-26 Score=172.59 Aligned_cols=226 Identities=14% Similarity=0.074 Sum_probs=137.1
Q ss_pred CCCeEEEEecCCC----cchhHHhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhc----CCCc
Q 024134 15 KQKHFVLVHGSNH----GAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLS----ADEK 86 (272)
Q Consensus 15 ~~~~vv~lhG~~~----~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~----~~~~ 86 (272)
++++||++||++. +...|..+++.|+++||+|+++|+||||.|.... .+++++.+|+.++++.+. +.++
T Consensus 25 ~~~~vv~i~gg~~~~~g~~~~~~~la~~l~~~G~~v~~~Dl~G~G~S~~~~---~~~~~~~~d~~~~~~~l~~~~~g~~~ 101 (274)
T TIGR03100 25 HTTGVLIVVGGPQYRVGSHRQFVLLARRLAEAGFPVLRFDYRGMGDSEGEN---LGFEGIDADIAAAIDAFREAAPHLRR 101 (274)
T ss_pred CCCeEEEEeCCccccCCchhHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCC---CCHHHHHHHHHHHHHHHHhhCCCCCc
Confidence 4568888888653 3344677889999999999999999999987542 466777888888888772 3467
Q ss_pred EEEEEeCcchHHHHHHHhhCccceeeeeeeeccCCCCCCCchhhhhhcccCCchhhhhhhhhhccccCCCccchhhhhhh
Q 024134 87 VILVGHSFGGLSVALAADKFPHKISVAIFLTAFMPDTKHQPSYVVERFSESIPREERLDTQYSIIDESNPSRMSILFGHK 166 (272)
Q Consensus 87 ~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (272)
++++|||+||.+++.+|.. +.+|+++|+++|...............+.. ..... ..
T Consensus 102 i~l~G~S~Gg~~a~~~a~~-~~~v~~lil~~p~~~~~~~~~~~~~~~~~~----~~~~~-------------------~~ 157 (274)
T TIGR03100 102 IVAWGLCDAASAALLYAPA-DLRVAGLVLLNPWVRTEAAQAASRIRHYYL----GQLLS-------------------AD 157 (274)
T ss_pred EEEEEECHHHHHHHHHhhh-CCCccEEEEECCccCCcccchHHHHHHHHH----HHHhC-------------------hH
Confidence 9999999999999999864 568999999998743222111111100000 00000 00
Q ss_pred HHHHhhccCCChh--HHHHHHH---h--ccCCccchHHhhhcccccccccCCceeEEEEeCCCCCccHHHH------HHH
Q 024134 167 FLTLKLYQLSPPE--DLELAKM---L--VKPGLLFTDELSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQ------QWM 233 (272)
Q Consensus 167 ~~~~~~~~~~~~~--~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~------~~~ 233 (272)
+............ ....... . ........ .+ .......+..+++|+++++|++|...+ ... ..+
T Consensus 158 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~l~~~~~P~ll~~g~~D~~~~-~~~~~~~~~~~~ 234 (274)
T TIGR03100 158 FWRKLLSGEVNLGSSLRGLGDALLKARQKGDEVAHG-GL-AERMKAGLERFQGPVLFILSGNDLTAQ-EFADSVLGEPAW 234 (274)
T ss_pred HHHHhcCCCccHHHHHHHHHHHHHhhhhcCCCcccc-hH-HHHHHHHHHhcCCcEEEEEcCcchhHH-HHHHHhccChhh
Confidence 0000000000000 0000000 0 00000000 00 111112233458999999999998764 222 444
Q ss_pred HhcC--CCceEEEecCCCcccccCCC-chHHHHHHHHHHh
Q 024134 234 IQNN--PVNEVMAIKGADHMAMLSKP-QPLSDCFSQIAHK 270 (272)
Q Consensus 234 ~~~~--~~~~~~~~~~~gH~~~~~~p-~~~~~~i~~fl~~ 270 (272)
.+.+ ++++++.+++++|++..+.+ +++.+.|.+||++
T Consensus 235 ~~~l~~~~v~~~~~~~~~H~l~~e~~~~~v~~~i~~wL~~ 274 (274)
T TIGR03100 235 RGALEDPGIERVEIDGADHTFSDRVWREWVAARTTEWLRR 274 (274)
T ss_pred HHHhhcCCeEEEecCCCCcccccHHHHHHHHHHHHHHHhC
Confidence 5544 78999999999999866555 8999999999963
No 51
>PRK06765 homoserine O-acetyltransferase; Provisional
Probab=99.95 E-value=2e-27 Score=184.14 Aligned_cols=255 Identities=13% Similarity=0.114 Sum_probs=152.1
Q ss_pred CCCeEEEEecCCCcchh-------------HHhhH---HHHHhCCCeEEEEcCCCCCCCCcc-----------c------
Q 024134 15 KQKHFVLVHGSNHGAWC-------------WYKVK---PRLEAAGHRVTAMDLAASGINMKK-----------I------ 61 (272)
Q Consensus 15 ~~~~vv~lhG~~~~~~~-------------~~~~~---~~l~~~g~~v~~~d~~G~G~s~~~-----------~------ 61 (272)
..+.||++|++.+++.. |..++ ..|-..-|.||++|..|-|.|..| +
T Consensus 55 ~~n~vlv~h~~tg~~h~~~~~~~~~~~~gww~~~iG~g~~lDt~~yfvi~~n~lG~~~~~~p~~g~tgp~s~~p~tg~~~ 134 (389)
T PRK06765 55 KSNVILITHYFSATSHAAGKYTADDEESGYWDGLIGPGKAIDTNKYFVISTDTLCNVQVKDPNVITTGPASINPKTGKPY 134 (389)
T ss_pred CCCEEEEeCCCCCchhhcccccccCCCcccHHhccCCCCCcCCCceEEEEecccCCCcCCCCCCCCCCCCCCCcCCCCcc
Confidence 35799999999886532 55444 234334599999999987653211 1
Q ss_pred ---ccccchhhchHHHHHHHHHhcCCCcEE-EEEeCcchHHHHHHHhhCccceeeeeeeeccCCCCCCCchhhhhhcccC
Q 024134 62 ---QDVRSFYEYNEPLLEILASLSADEKVI-LVGHSFGGLSVALAADKFPHKISVAIFLTAFMPDTKHQPSYVVERFSES 137 (272)
Q Consensus 62 ---~~~~~~~~~~~~~~~~i~~l~~~~~~~-lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~ 137 (272)
...++++++++++.++++++ +.++++ ++||||||++++.+|.++|++|+++|++++.............+.....
T Consensus 135 ~~~fP~~t~~d~~~~~~~ll~~l-gi~~~~~vvG~SmGG~ial~~a~~~P~~v~~lv~ia~~~~~~~~~~~~~~~~~~~a 213 (389)
T PRK06765 135 GMDFPVVTILDFVRVQKELIKSL-GIARLHAVMGPSMGGMQAQEWAVHYPHMVERMIGVIGNPQNDAWTSVNVLQNWAEA 213 (389)
T ss_pred CCCCCcCcHHHHHHHHHHHHHHc-CCCCceEEEEECHHHHHHHHHHHHChHhhheEEEEecCCCCChhHHHHHHHHHHHH
Confidence 12378999999999999999 889986 9999999999999999999999999999876433221101111101000
Q ss_pred C-chhhhhhhhhhccccCCC-------ccchhhhhhhHHHHhhccCC--Ch---------hHH-HHHH----HhccC---
Q 024134 138 I-PREERLDTQYSIIDESNP-------SRMSILFGHKFLTLKLYQLS--PP---------EDL-ELAK----MLVKP--- 190 (272)
Q Consensus 138 ~-~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~--~~---------~~~-~~~~----~~~~~--- 190 (272)
+ ....|....+.....+.. ........++++...+.... .. ... .+.. .+...
T Consensus 214 i~~dp~~~~G~y~~~~~p~~Gl~~a~~~~~~~~~s~~~~~~~f~r~~~~~~~~~~~~~~~~~~e~yl~~~~~~~~~~~Da 293 (389)
T PRK06765 214 IRLDPNWKGGKYYGEEQPMKGLTLALRMMTMNAFDEHFYETTFPRNASIEVDPYEKVSTLTSFEKEINKATYRRAELVDA 293 (389)
T ss_pred HHhCCCCCCCCCCCCCCchHHHHHHHHHHHHHcCCHHHHHHHcCcCccccccccccccchhhHHHHHHHHHHHhhhccCh
Confidence 0 000000000000000000 00011112222222221110 00 000 0000 00000
Q ss_pred Cccc--hHHhhhc-------ccccccccCCceeEEEEeCCCCCccHHHHHHHHhcCC----CceEEEecC-CCcccccCC
Q 024134 191 GLLF--TDELSKA-------NEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNNP----VNEVMAIKG-ADHMAMLSK 256 (272)
Q Consensus 191 ~~~~--~~~~~~~-------~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~~-~gH~~~~~~ 256 (272)
.... .+.+... +....+..+++|+|+|+|++|.++|++..+.+.+.++ +++++++++ +||+.++++
T Consensus 294 n~~l~l~~a~~~~d~g~~~~dl~~~L~~I~~PtLvI~G~~D~l~p~~~~~~la~~lp~~~~~a~l~~I~s~~GH~~~le~ 373 (389)
T PRK06765 294 NHWLYLAKAVQLFDAGHGFSSLEEALSNIEANVLMIPCKQDLLQPPRYNYKMVDILQKQGKYAEVYEIESINGHMAGVFD 373 (389)
T ss_pred hhHHHHHHHHHhcCCccccCCHHHHHhcCCCCEEEEEeCCCCCCCHHHHHHHHHHhhhcCCCeEEEEECCCCCcchhhcC
Confidence 0000 0111111 1223355679999999999999999999998988886 689999985 899999999
Q ss_pred CchHHHHHHHHHHh
Q 024134 257 PQPLSDCFSQIAHK 270 (272)
Q Consensus 257 p~~~~~~i~~fl~~ 270 (272)
|+++++.|.+||++
T Consensus 374 p~~~~~~I~~FL~~ 387 (389)
T PRK06765 374 IHLFEKKIYEFLNR 387 (389)
T ss_pred HHHHHHHHHHHHcc
Confidence 99999999999975
No 52
>PRK13604 luxD acyl transferase; Provisional
Probab=99.95 E-value=5.1e-26 Score=167.51 Aligned_cols=204 Identities=12% Similarity=0.062 Sum_probs=128.7
Q ss_pred CCCeEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCCCC-CCCCcccccccchhhchHHHHHHHHHh--cCCCcEEEEE
Q 024134 15 KQKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAAS-GINMKKIQDVRSFYEYNEPLLEILASL--SADEKVILVG 91 (272)
Q Consensus 15 ~~~~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~-G~s~~~~~~~~~~~~~~~~~~~~i~~l--~~~~~~~lvG 91 (272)
+.++||++||++.+...+..+++.|+++||.|+.+|+||+ |.|++.... .+......|+.++++.+ ....++.|+|
T Consensus 36 ~~~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrfD~rg~~GeS~G~~~~-~t~s~g~~Dl~aaid~lk~~~~~~I~LiG 114 (307)
T PRK13604 36 KNNTILIASGFARRMDHFAGLAEYLSSNGFHVIRYDSLHHVGLSSGTIDE-FTMSIGKNSLLTVVDWLNTRGINNLGLIA 114 (307)
T ss_pred CCCEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccc-CcccccHHHHHHHHHHHHhcCCCceEEEE
Confidence 3478999999999887799999999999999999999988 999765433 34444567776666666 1457899999
Q ss_pred eCcchHHHHHHHhhCccceeeeeeeeccCCCCCCCchhhhhhcccCCchhhhhhhhhhccccCCCc-cchhhh-hhhHHH
Q 024134 92 HSFGGLSVALAADKFPHKISVAIFLTAFMPDTKHQPSYVVERFSESIPREERLDTQYSIIDESNPS-RMSILF-GHKFLT 169 (272)
Q Consensus 92 ~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~ 169 (272)
|||||.+++..|... .++++|+.+|+.... ...+..... .+. .+.....+... .....+ ...++.
T Consensus 115 ~SmGgava~~~A~~~--~v~~lI~~sp~~~l~-----d~l~~~~~~----~~~--~~p~~~lp~~~d~~g~~l~~~~f~~ 181 (307)
T PRK13604 115 ASLSARIAYEVINEI--DLSFLITAVGVVNLR-----DTLERALGY----DYL--SLPIDELPEDLDFEGHNLGSEVFVT 181 (307)
T ss_pred ECHHHHHHHHHhcCC--CCCEEEEcCCcccHH-----HHHHHhhhc----ccc--cCcccccccccccccccccHHHHHH
Confidence 999999998777643 389999998874421 111110000 000 00000000000 000000 011111
Q ss_pred HhhccCCChhHHHHHHHhccCCccchHHhhhcccccccccCCceeEEEEeCCCCCccHHHHHHHHhcCC--CceEEEecC
Q 024134 170 LKLYQLSPPEDLELAKMLVKPGLLFTDELSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNNP--VNEVMAIKG 247 (272)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~--~~~~~~~~~ 247 (272)
..+.. ... ...........+++|+|+|||++|.++|.+.++.+.+.++ +++++.++|
T Consensus 182 ~~~~~--------------~~~-------~~~s~i~~~~~l~~PvLiIHG~~D~lVp~~~s~~l~e~~~s~~kkl~~i~G 240 (307)
T PRK13604 182 DCFKH--------------GWD-------TLDSTINKMKGLDIPFIAFTANNDSWVKQSEVIDLLDSIRSEQCKLYSLIG 240 (307)
T ss_pred HHHhc--------------Ccc-------ccccHHHHHhhcCCCEEEEEcCCCCccCHHHHHHHHHHhccCCcEEEEeCC
Confidence 00000 000 0001111233347999999999999999999999998775 789999999
Q ss_pred CCcccc
Q 024134 248 ADHMAM 253 (272)
Q Consensus 248 ~gH~~~ 253 (272)
++|.+.
T Consensus 241 a~H~l~ 246 (307)
T PRK13604 241 SSHDLG 246 (307)
T ss_pred CccccC
Confidence 999973
No 53
>PRK11071 esterase YqiA; Provisional
Probab=99.94 E-value=2.1e-25 Score=157.20 Aligned_cols=184 Identities=11% Similarity=0.070 Sum_probs=126.2
Q ss_pred CeEEEEecCCCcchhHHh--hHHHHHh--CCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcCCCcEEEEEe
Q 024134 17 KHFVLVHGSNHGAWCWYK--VKPRLEA--AGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSADEKVILVGH 92 (272)
Q Consensus 17 ~~vv~lhG~~~~~~~~~~--~~~~l~~--~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~lvG~ 92 (272)
|+||++||++++...|.. +.+.|.+ .+|+|+++|+||++ ++.++++.++++++ +.++++++||
T Consensus 2 p~illlHGf~ss~~~~~~~~~~~~l~~~~~~~~v~~~dl~g~~------------~~~~~~l~~l~~~~-~~~~~~lvG~ 68 (190)
T PRK11071 2 STLLYLHGFNSSPRSAKATLLKNWLAQHHPDIEMIVPQLPPYP------------ADAAELLESLVLEH-GGDPLGLVGS 68 (190)
T ss_pred CeEEEECCCCCCcchHHHHHHHHHHHHhCCCCeEEeCCCCCCH------------HHHHHHHHHHHHHc-CCCCeEEEEE
Confidence 689999999999999874 4466654 36999999999984 35778888999988 7889999999
Q ss_pred CcchHHHHHHHhhCccceeeeeeeeccCCCCCCCchhhhhhcccCCchhhhhhhhhhccccCCCccchhhhhhhHHHHhh
Q 024134 93 SFGGLSVALAADKFPHKISVAIFLTAFMPDTKHQPSYVVERFSESIPREERLDTQYSIIDESNPSRMSILFGHKFLTLKL 172 (272)
Q Consensus 93 S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (272)
||||.+++.+|.++|. ++|+++|.... ......+.... .. .... ....++..++.
T Consensus 69 S~Gg~~a~~~a~~~~~---~~vl~~~~~~~-----~~~~~~~~~~~---------~~----~~~~-~~~~~~~~~~~--- 123 (190)
T PRK11071 69 SLGGYYATWLSQCFML---PAVVVNPAVRP-----FELLTDYLGEN---------EN----PYTG-QQYVLESRHIY--- 123 (190)
T ss_pred CHHHHHHHHHHHHcCC---CEEEECCCCCH-----HHHHHHhcCCc---------cc----ccCC-CcEEEcHHHHH---
Confidence 9999999999999983 46888875331 01111111100 00 0000 00001111111
Q ss_pred ccCCChhHHHHHHHhccCCccchHHhhhcccccccccCCceeEEEEeCCCCCccHHHHHHHHhcCCCceEEEecCCCccc
Q 024134 173 YQLSPPEDLELAKMLVKPGLLFTDELSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNNPVNEVMAIKGADHMA 252 (272)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~ 252 (272)
++..... .... ..+|+++++|++|.++|++.+.++.+. ++.++++|++|.+
T Consensus 124 ------------------------d~~~~~~-~~i~-~~~~v~iihg~~De~V~~~~a~~~~~~---~~~~~~~ggdH~f 174 (190)
T PRK11071 124 ------------------------DLKVMQI-DPLE-SPDLIWLLQQTGDEVLDYRQAVAYYAA---CRQTVEEGGNHAF 174 (190)
T ss_pred ------------------------HHHhcCC-ccCC-ChhhEEEEEeCCCCcCCHHHHHHHHHh---cceEEECCCCcch
Confidence 1111111 1111 377899999999999999999998884 5778889999997
Q ss_pred ccCCCchHHHHHHHHHH
Q 024134 253 MLSKPQPLSDCFSQIAH 269 (272)
Q Consensus 253 ~~~~p~~~~~~i~~fl~ 269 (272)
+..+++.+.+.+|++
T Consensus 175 --~~~~~~~~~i~~fl~ 189 (190)
T PRK11071 175 --VGFERYFNQIVDFLG 189 (190)
T ss_pred --hhHHHhHHHHHHHhc
Confidence 445888899999875
No 54
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=99.94 E-value=1.4e-26 Score=170.21 Aligned_cols=214 Identities=14% Similarity=0.137 Sum_probs=131.8
Q ss_pred CeEEEEcCCCCCCCCc---ccccccchhhchHHHHHHHHHhcCCCcEEEEEeCcchHHHHHHHhhCccceeeeeeeeccC
Q 024134 44 HRVTAMDLAASGINMK---KIQDVRSFYEYNEPLLEILASLSADEKVILVGHSFGGLSVALAADKFPHKISVAIFLTAFM 120 (272)
Q Consensus 44 ~~v~~~d~~G~G~s~~---~~~~~~~~~~~~~~~~~~i~~l~~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~ 120 (272)
|+|+++|+||+|.|++ .....++..++++++..+++.+ +.++++++||||||.+++.+|.++|++|+++|+++++.
T Consensus 1 f~vi~~d~rG~g~S~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~vG~S~Gg~~~~~~a~~~p~~v~~lvl~~~~~ 79 (230)
T PF00561_consen 1 FDVILFDLRGFGYSSPHWDPDFPDYTTDDLAADLEALREAL-GIKKINLVGHSMGGMLALEYAAQYPERVKKLVLISPPP 79 (230)
T ss_dssp EEEEEEECTTSTTSSSCCGSGSCTHCHHHHHHHHHHHHHHH-TTSSEEEEEETHHHHHHHHHHHHSGGGEEEEEEESESS
T ss_pred CEEEEEeCCCCCCCCCCccCCcccccHHHHHHHHHHHHHHh-CCCCeEEEEECCChHHHHHHHHHCchhhcCcEEEeeec
Confidence 6899999999999995 4556689999999999999999 88889999999999999999999999999999999852
Q ss_pred CCCCCCchhhhhhcccC-CchhhhhhhhhhccccCCCccchhhhh--hhHHHHhhccCCChhHHHHHHHhccCC------
Q 024134 121 PDTKHQPSYVVERFSES-IPREERLDTQYSIIDESNPSRMSILFG--HKFLTLKLYQLSPPEDLELAKMLVKPG------ 191 (272)
Q Consensus 121 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 191 (272)
... .......... .................. ........ ......... ................
T Consensus 80 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 152 (230)
T PF00561_consen 80 DLP----DGLWNRIWPRGNLQGQLLDNFFNFLSDPI-KPLLGRWPKQFFAYDREFV--EDFLKQFQSQQYARFAETDAFD 152 (230)
T ss_dssp HHH----HHHHHHCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH--HTHHHHHHHHHHHHTCHHHHHH
T ss_pred cch----hhhhHHHHhhhhhhhhHHHhhhccccccc-hhhhhhhhhheeeccCccc--cchhhccchhhhhHHHHHHHHh
Confidence 000 0000000000 000000000000000000 00000000 000000000 0000000000000000
Q ss_pred ---ccchHHhhhcccccccccCCceeEEEEeCCCCCccHHHHHHHHhcCCCceEEEecCCCcccccCCCchHHHHHH
Q 024134 192 ---LLFTDELSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNNPVNEVMAIKGADHMAMLSKPQPLSDCFS 265 (272)
Q Consensus 192 ---~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~p~~~~~~i~ 265 (272)
..................+++|+++++|++|.++|++....+.+.+|+.++++++++||+.++++|+++++.|.
T Consensus 153 ~~~~~~~~~~~~~~~~~~l~~i~~p~l~i~~~~D~~~p~~~~~~~~~~~~~~~~~~~~~~GH~~~~~~~~~~~~~i~ 229 (230)
T PF00561_consen 153 NMFWNALGYFSVWDPSPALSNIKVPTLIIWGEDDPLVPPESSEQLAKLIPNSQLVLIEGSGHFAFLEGPDEFNEIII 229 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTSEEEEEEETTCSSSHHHHHHHHHHHSTTEEEEEETTCCSTHHHHSHHHHHHHHH
T ss_pred hhccccccccccccccccccccCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCEEEECCCCChHHHhcCHHhhhhhhc
Confidence 00011122222233355679999999999999999999999999999999999999999999999999998875
No 55
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=99.93 E-value=5.8e-25 Score=170.63 Aligned_cols=248 Identities=10% Similarity=0.095 Sum_probs=143.3
Q ss_pred CCCeEEEEecCCCcchhH-----HhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHH-HHHHHHHh---cCCC
Q 024134 15 KQKHFVLVHGSNHGAWCW-----YKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEP-LLEILASL---SADE 85 (272)
Q Consensus 15 ~~~~vv~lhG~~~~~~~~-----~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~-~~~~i~~l---~~~~ 85 (272)
.+++||++||+..+...+ +.+++.|.++||+|+++|++|+|.|... .++++++.+ +.++++.+ .+.+
T Consensus 61 ~~~pvl~v~~~~~~~~~~d~~~~~~~~~~L~~~G~~V~~~D~~g~g~s~~~----~~~~d~~~~~~~~~v~~l~~~~~~~ 136 (350)
T TIGR01836 61 HKTPLLIVYALVNRPYMLDLQEDRSLVRGLLERGQDVYLIDWGYPDRADRY----LTLDDYINGYIDKCVDYICRTSKLD 136 (350)
T ss_pred CCCcEEEeccccccceeccCCCCchHHHHHHHCCCeEEEEeCCCCCHHHhc----CCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 356899999987666554 5899999999999999999999987532 356666533 44444433 2678
Q ss_pred cEEEEEeCcchHHHHHHHhhCccceeeeeeeeccCCCCCCCchhhhhhcccCCch-----------hhhhhhhhhccccC
Q 024134 86 KVILVGHSFGGLSVALAADKFPHKISVAIFLTAFMPDTKHQPSYVVERFSESIPR-----------EERLDTQYSIIDES 154 (272)
Q Consensus 86 ~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~ 154 (272)
+++++||||||.+++.++..+|++|+++|+++++........ ....+...... ..+....+... .+
T Consensus 137 ~i~lvGhS~GG~i~~~~~~~~~~~v~~lv~~~~p~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~p~~~~~~~f~~l-~p 213 (350)
T TIGR01836 137 QISLLGICQGGTFSLCYAALYPDKIKNLVTMVTPVDFETPGN--MLSNWARHVDIDLAVDTMGNIPGELLNLTFLML-KP 213 (350)
T ss_pred cccEEEECHHHHHHHHHHHhCchheeeEEEeccccccCCCCc--hhhhhccccCHHHHHHhcCCCCHHHHHHHHHhc-Cc
Confidence 999999999999999999999999999999998764322111 01111111000 00101000000 00
Q ss_pred CCccchhh-------hhhhHHHHh-----hccCCChh----HHHHHHHhccCCccchHHhhhcccccccccCCceeEEEE
Q 024134 155 NPSRMSIL-------FGHKFLTLK-----LYQLSPPE----DLELAKMLVKPGLLFTDELSKANEFSNEGYGSVKRDFVG 218 (272)
Q Consensus 155 ~~~~~~~~-------~~~~~~~~~-----~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~ 218 (272)
........ .+++..... ........ .......++.........+.-......+..+++|+++++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~d~~~~~~~~~~~~~~~~~~~n~l~~g~~~~~~~~~~l~~i~~Pvliv~ 293 (350)
T TIGR01836 214 FSLGYQKYVNLVDILEDERKVENFLRMEKWIFDSPDQAGEAFRQFVKDFYQQNGLINGEVEIGGRKVDLKNIKMPILNIY 293 (350)
T ss_pred chhhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCcCccHHHHHHHHHHHHhcCcccCCeeEECCEEccHHhCCCCeEEEe
Confidence 00000000 000100000 00000000 001111111111100000000011123556799999999
Q ss_pred eCCCCCccHHHHHHHHhcCCC--ceEEEecCCCcccccCCC---chHHHHHHHHHHh
Q 024134 219 SDKDNCIPKEFQQWMIQNNPV--NEVMAIKGADHMAMLSKP---QPLSDCFSQIAHK 270 (272)
Q Consensus 219 g~~D~~~~~~~~~~~~~~~~~--~~~~~~~~~gH~~~~~~p---~~~~~~i~~fl~~ 270 (272)
|++|.++|++..+.+.+.+++ .++++++ +||..++..+ +++.+.|.+||++
T Consensus 294 G~~D~i~~~~~~~~~~~~~~~~~~~~~~~~-~gH~~~~~~~~~~~~v~~~i~~wl~~ 349 (350)
T TIGR01836 294 AERDHLVPPDASKALNDLVSSEDYTELSFP-GGHIGIYVSGKAQKEVPPAIGKWLQA 349 (350)
T ss_pred cCCCCcCCHHHHHHHHHHcCCCCeEEEEcC-CCCEEEEECchhHhhhhHHHHHHHHh
Confidence 999999999999999888764 4667777 8998877654 7888999999975
No 56
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=99.93 E-value=1.3e-24 Score=173.04 Aligned_cols=234 Identities=15% Similarity=0.097 Sum_probs=144.1
Q ss_pred CCCeEEEEecCCCcchhHH-----hhHHHHHhCCCeEEEEcCCCCCCCCcccc-cccchhhchHHHHHHHHHhcCCCcEE
Q 024134 15 KQKHFVLVHGSNHGAWCWY-----KVKPRLEAAGHRVTAMDLAASGINMKKIQ-DVRSFYEYNEPLLEILASLSADEKVI 88 (272)
Q Consensus 15 ~~~~vv~lhG~~~~~~~~~-----~~~~~l~~~g~~v~~~d~~G~G~s~~~~~-~~~~~~~~~~~~~~~i~~l~~~~~~~ 88 (272)
.++|||++||+......|+ .+++.|.++||+|+++|++|+|.+..... ..+..+.+.+.+..+++.+ +.++++
T Consensus 187 ~~~PlLiVp~~i~k~yilDL~p~~Slv~~L~~qGf~V~~iDwrgpg~s~~~~~~ddY~~~~i~~al~~v~~~~-g~~kv~ 265 (532)
T TIGR01838 187 HKTPLLIVPPWINKYYILDLRPQNSLVRWLVEQGHTVFVISWRNPDASQADKTFDDYIRDGVIAALEVVEAIT-GEKQVN 265 (532)
T ss_pred CCCcEEEECcccccceeeecccchHHHHHHHHCCcEEEEEECCCCCcccccCChhhhHHHHHHHHHHHHHHhc-CCCCeE
Confidence 4689999999988888775 79999999999999999999998854321 1233344555566666666 789999
Q ss_pred EEEeCcchHHHH----HHHhhC-ccceeeeeeeeccCCCCCCCchhhhhhcccCCc--------------hhhhhhhhhh
Q 024134 89 LVGHSFGGLSVA----LAADKF-PHKISVAIFLTAFMPDTKHQPSYVVERFSESIP--------------REERLDTQYS 149 (272)
Q Consensus 89 lvG~S~Gg~~a~----~~a~~~-p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~ 149 (272)
++|||+||.++. .+++.. +++|++++++++........ ....+..... ....+...|.
T Consensus 266 lvG~cmGGtl~a~ala~~aa~~~~~rv~slvll~t~~Df~~~G---~l~~f~~~~~~~~~e~~~~~~G~lpg~~m~~~F~ 342 (532)
T TIGR01838 266 CVGYCIGGTLLSTALAYLAARGDDKRIKSATFFTTLLDFSDPG---ELGVFVDEEIVAGIERQNGGGGYLDGRQMAVTFS 342 (532)
T ss_pred EEEECcCcHHHHHHHHHHHHhCCCCccceEEEEecCcCCCCcc---hhhhhcCchhHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 999999999852 244454 78999999999875433221 1111111100 0011111111
Q ss_pred ccccCCCccchhhhhhhHHHHhhccCCCh-----------------hHHHHHHHhccCCccchHHhhhcccccccccCCc
Q 024134 150 IIDESNPSRMSILFGHKFLTLKLYQLSPP-----------------EDLELAKMLVKPGLLFTDELSKANEFSNEGYGSV 212 (272)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (272)
... +. ...-..++..++....+. ...+....++..+......+.-......+..+++
T Consensus 343 ~lr-p~-----~l~w~~~v~~yl~g~~~~~fdll~Wn~D~t~lP~~~~~~~lr~ly~~N~L~~G~~~v~g~~~dL~~I~v 416 (532)
T TIGR01838 343 LLR-EN-----DLIWNYYVDNYLKGKSPVPFDLLFWNSDSTNLPGKMHNFYLRNLYLQNALTTGGLEVCGVRLDLSKVKV 416 (532)
T ss_pred hcC-hh-----hHHHHHHHHHHhcCCCccchhHHHHhccCccchHHHHHHHHHHHHhcCCCcCCeeEECCEecchhhCCC
Confidence 110 00 000011111111111110 0111222222222221122222223345677899
Q ss_pred eeEEEEeCCCCCccHHHHHHHHhcCCCceEEEecCCCcccccCCCc
Q 024134 213 KRDFVGSDKDNCIPKEFQQWMIQNNPVNEVMAIKGADHMAMLSKPQ 258 (272)
Q Consensus 213 P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~p~ 258 (272)
|+++|+|++|.++|++.++.+.+.+++.+..+++++||.+++++|.
T Consensus 417 PvLvV~G~~D~IvP~~sa~~l~~~i~~~~~~vL~~sGHi~~ienPp 462 (532)
T TIGR01838 417 PVYIIATREDHIAPWQSAYRGAALLGGPKTFVLGESGHIAGVVNPP 462 (532)
T ss_pred CEEEEeeCCCCcCCHHHHHHHHHHCCCCEEEEECCCCCchHhhCCC
Confidence 9999999999999999999999999999999999999999999874
No 57
>PRK10566 esterase; Provisional
Probab=99.93 E-value=8.7e-25 Score=162.46 Aligned_cols=204 Identities=13% Similarity=0.079 Sum_probs=125.7
Q ss_pred CCCeEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCCCCCCCCcccccccch-------hhchHHHHHHHHHh-----c
Q 024134 15 KQKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSF-------YEYNEPLLEILASL-----S 82 (272)
Q Consensus 15 ~~~~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~-------~~~~~~~~~~i~~l-----~ 82 (272)
..|+||++||++++...|..+...|+++||+|+++|+||||.+...... .++ .+..+++.++++.+ .
T Consensus 26 ~~p~vv~~HG~~~~~~~~~~~~~~l~~~G~~v~~~d~~g~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 104 (249)
T PRK10566 26 PLPTVFFYHGFTSSKLVYSYFAVALAQAGFRVIMPDAPMHGARFSGDEA-RRLNHFWQILLQNMQEFPTLRAAIREEGWL 104 (249)
T ss_pred CCCEEEEeCCCCcccchHHHHHHHHHhCCCEEEEecCCcccccCCCccc-cchhhHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 4589999999999998999999999999999999999999986432111 111 12234444444443 1
Q ss_pred CCCcEEEEEeCcchHHHHHHHhhCccceeeeeeeeccCCCCCCCchhhhhhcccCCchhhhhhhhhhccccCCCccchhh
Q 024134 83 ADEKVILVGHSFGGLSVALAADKFPHKISVAIFLTAFMPDTKHQPSYVVERFSESIPREERLDTQYSIIDESNPSRMSIL 162 (272)
Q Consensus 83 ~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (272)
+.++++++|||+||.+++.++.++|+....++++++... ..+. ...+.. ... ...
T Consensus 105 ~~~~i~v~G~S~Gg~~al~~~~~~~~~~~~~~~~~~~~~----------~~~~---------~~~~~~----~~~--~~~ 159 (249)
T PRK10566 105 LDDRLAVGGASMGGMTALGIMARHPWVKCVASLMGSGYF----------TSLA---------RTLFPP----LIP--ETA 159 (249)
T ss_pred CccceeEEeecccHHHHHHHHHhCCCeeEEEEeeCcHHH----------HHHH---------HHhccc----ccc--ccc
Confidence 457899999999999999999988874444444433210 0000 000000 000 000
Q ss_pred hhhhHHHHhhccCCChhHHHHHHHhccCCccchHHhhhcccccccccC-CceeEEEEeCCCCCccHHHHHHHHhcCC---
Q 024134 163 FGHKFLTLKLYQLSPPEDLELAKMLVKPGLLFTDELSKANEFSNEGYG-SVKRDFVGSDKDNCIPKEFQQWMIQNNP--- 238 (272)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~P~l~i~g~~D~~~~~~~~~~~~~~~~--- 238 (272)
...... .... ..+...+.......+ ++|+|+++|++|.++|++..+.+.+.++
T Consensus 160 ~~~~~~------------~~~~-----------~~~~~~~~~~~~~~i~~~P~Lii~G~~D~~v~~~~~~~l~~~l~~~g 216 (249)
T PRK10566 160 AQQAEF------------NNIV-----------APLAEWEVTHQLEQLADRPLLLWHGLADDVVPAAESLRLQQALRERG 216 (249)
T ss_pred ccHHHH------------HHHH-----------HHHhhcChhhhhhhcCCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcC
Confidence 000000 0000 000011111112223 6899999999999999999888887664
Q ss_pred ---CceEEEecCCCcccccCCCchHHHHHHHHHHhh
Q 024134 239 ---VNEVMAIKGADHMAMLSKPQPLSDCFSQIAHKY 271 (272)
Q Consensus 239 ---~~~~~~~~~~gH~~~~~~p~~~~~~i~~fl~~~ 271 (272)
++++..++++||.+. ....+.+.+||++.
T Consensus 217 ~~~~~~~~~~~~~~H~~~----~~~~~~~~~fl~~~ 248 (249)
T PRK10566 217 LDKNLTCLWEPGVRHRIT----PEALDAGVAFFRQH 248 (249)
T ss_pred CCcceEEEecCCCCCccC----HHHHHHHHHHHHhh
Confidence 257778999999863 34668888999864
No 58
>PLN02872 triacylglycerol lipase
Probab=99.92 E-value=2.3e-23 Score=161.60 Aligned_cols=255 Identities=15% Similarity=0.136 Sum_probs=149.2
Q ss_pred CCCeEEEEecCCCcchhHH------hhHHHHHhCCCeEEEEcCCCCCCCCcc-----c-c--cccchhhch-HHHHHHHH
Q 024134 15 KQKHFVLVHGSNHGAWCWY------KVKPRLEAAGHRVTAMDLAASGINMKK-----I-Q--DVRSFYEYN-EPLLEILA 79 (272)
Q Consensus 15 ~~~~vv~lhG~~~~~~~~~------~~~~~l~~~g~~v~~~d~~G~G~s~~~-----~-~--~~~~~~~~~-~~~~~~i~ 79 (272)
.+|+|+|+||+++++..|. .+...|+++||+|+++|+||++.|.+. . . ..+++++++ .|+.++++
T Consensus 73 ~~~~Vll~HGl~~ss~~w~~~~~~~sla~~La~~GydV~l~n~RG~~~s~gh~~~~~~~~~fw~~s~~e~a~~Dl~a~id 152 (395)
T PLN02872 73 RGPPVLLQHGLFMAGDAWFLNSPEQSLGFILADHGFDVWVGNVRGTRWSYGHVTLSEKDKEFWDWSWQELALYDLAEMIH 152 (395)
T ss_pred CCCeEEEeCcccccccceeecCcccchHHHHHhCCCCcccccccccccccCCCCCCccchhccCCcHHHHHHHHHHHHHH
Confidence 4689999999999998883 355678889999999999998765321 1 1 135788888 79999999
Q ss_pred Hhc--CCCcEEEEEeCcchHHHHHHHhhCcc---ceeeeeeeeccCCCCCCCchhhhhhcccC--------C------ch
Q 024134 80 SLS--ADEKVILVGHSFGGLSVALAADKFPH---KISVAIFLTAFMPDTKHQPSYVVERFSES--------I------PR 140 (272)
Q Consensus 80 ~l~--~~~~~~lvG~S~Gg~~a~~~a~~~p~---~v~~lvl~~~~~~~~~~~~~~~~~~~~~~--------~------~~ 140 (272)
++. ..++++++|||+||.+++.++ .+|+ +|+.+++++|.......... ....+... . ..
T Consensus 153 ~i~~~~~~~v~~VGhS~Gg~~~~~~~-~~p~~~~~v~~~~~l~P~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~ 230 (395)
T PLN02872 153 YVYSITNSKIFIVGHSQGTIMSLAAL-TQPNVVEMVEAAALLCPISYLDHVTAP-LVLRMVFMHLDQMVVAMGIHQLNFR 230 (395)
T ss_pred HHHhccCCceEEEEECHHHHHHHHHh-hChHHHHHHHHHHHhcchhhhccCCCH-HHHHHHHHhHHHHHHHhcCceecCC
Confidence 861 347999999999999998655 6776 68889999987543221111 11100000 0 00
Q ss_pred hhhhhhhhhccccCCCcc---c------hhhhhhhHHHHhhcc---CCChhHHHHHHHhccCCcc--c----hHH---hh
Q 024134 141 EERLDTQYSIIDESNPSR---M------SILFGHKFLTLKLYQ---LSPPEDLELAKMLVKPGLL--F----TDE---LS 199 (272)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~---~------~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~----~~~---~~ 199 (272)
...........-...... . ...++...+...... ........-...+.+.... + ... +.
T Consensus 231 ~~~~~~~~~~~C~~~~~c~~~~~~~~g~~~~~n~~~~~~~~~~~pagtS~k~~~H~~Q~~~s~~f~~yDyg~~~n~~~Yg 310 (395)
T PLN02872 231 SDVLVKLLDSICEGHMDCNDLLTSITGTNCCFNASRIDYYLEYEPHPSSVKNLRHLFQMIRKGTFAHYDYGIFKNLKLYG 310 (395)
T ss_pred cHHHHHHHHHHccCchhHHHHHHHHhCCCcccchhhhhHHHhcCCCcchHHHHHHHHHHHhcCCcccCCCCchhhHHHhC
Confidence 000000000000000000 0 000011111111100 0011111111111111111 1 011 11
Q ss_pred h-cccccccccC--CceeEEEEeCCCCCccHHHHHHHHhcCCC-ceEEEecCCCcc---cccCCCchHHHHHHHHHHhh
Q 024134 200 K-ANEFSNEGYG--SVKRDFVGSDKDNCIPKEFQQWMIQNNPV-NEVMAIKGADHM---AMLSKPQPLSDCFSQIAHKY 271 (272)
Q Consensus 200 ~-~~~~~~~~~~--~~P~l~i~g~~D~~~~~~~~~~~~~~~~~-~~~~~~~~~gH~---~~~~~p~~~~~~i~~fl~~~ 271 (272)
. ..+.-.+..+ ++|+++++|++|.+++++..+.+.+.+++ .+++.++++||. ...+.|+++.+.|.+|++++
T Consensus 311 ~~~pP~Y~l~~i~~~~Pv~i~~G~~D~lv~~~dv~~l~~~Lp~~~~l~~l~~~gH~dfi~~~eape~V~~~Il~fL~~~ 389 (395)
T PLN02872 311 QVNPPAFDLSLIPKSLPLWMGYGGTDGLADVTDVEHTLAELPSKPELLYLENYGHIDFLLSTSAKEDVYNHMIQFFRSL 389 (395)
T ss_pred CCCCCCcCcccCCCCccEEEEEcCCCCCCCHHHHHHHHHHCCCccEEEEcCCCCCHHHHhCcchHHHHHHHHHHHHHHh
Confidence 1 1222335555 57999999999999999999999998887 688899999996 34488999999999999864
No 59
>PRK07868 acyl-CoA synthetase; Validated
Probab=99.91 E-value=3.6e-23 Score=179.61 Aligned_cols=252 Identities=14% Similarity=0.038 Sum_probs=146.0
Q ss_pred cCCCeEEEEecCCCcchhHHhh-----HHHHHhCCCeEEEEcCCCCCCCCcccc-cccchhhchHHHHHHHHHh--cCCC
Q 024134 14 KKQKHFVLVHGSNHGAWCWYKV-----KPRLEAAGHRVTAMDLAASGINMKKIQ-DVRSFYEYNEPLLEILASL--SADE 85 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~~~~~-----~~~l~~~g~~v~~~d~~G~G~s~~~~~-~~~~~~~~~~~~~~~i~~l--~~~~ 85 (272)
..+++|||+||++.+...|+.. ++.|.++||+|+++|+ |.|+.+.. ...++.+++..+.+.++.+ ...+
T Consensus 65 ~~~~plllvhg~~~~~~~~d~~~~~s~v~~L~~~g~~v~~~d~---G~~~~~~~~~~~~l~~~i~~l~~~l~~v~~~~~~ 141 (994)
T PRK07868 65 PVGPPVLMVHPMMMSADMWDVTRDDGAVGILHRAGLDPWVIDF---GSPDKVEGGMERNLADHVVALSEAIDTVKDVTGR 141 (994)
T ss_pred CCCCcEEEECCCCCCccceecCCcccHHHHHHHCCCEEEEEcC---CCCChhHcCccCCHHHHHHHHHHHHHHHHHhhCC
Confidence 3568999999999999999865 8899989999999995 66554432 1246667766666666542 1347
Q ss_pred cEEEEEeCcchHHHHHHHhhC-ccceeeeeeeeccCCCCCCCchhhhh------------hcccCCchhhhhhhhhhccc
Q 024134 86 KVILVGHSFGGLSVALAADKF-PHKISVAIFLTAFMPDTKHQPSYVVE------------RFSESIPREERLDTQYSIID 152 (272)
Q Consensus 86 ~~~lvG~S~Gg~~a~~~a~~~-p~~v~~lvl~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~ 152 (272)
+++++||||||.+++.+++.+ +++|+++|+++++............. .+........+.........
T Consensus 142 ~v~lvG~s~GG~~a~~~aa~~~~~~v~~lvl~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l 221 (994)
T PRK07868 142 DVHLVGYSQGGMFCYQAAAYRRSKDIASIVTFGSPVDTLAALPMGIPAGLAAAAADFMADHVFNRLDIPGWMARTGFQML 221 (994)
T ss_pred ceEEEEEChhHHHHHHHHHhcCCCccceEEEEecccccCCCCcccchhhhhhcccccchhhhhhcCCCCHHHHHHHHHhc
Confidence 899999999999999998755 56899999988874322110000000 00000000011000000000
Q ss_pred cCCCccchhhhhhhHHHHhhccC--CChhHHHHHHHhc----cCC---ccchHHhhhc-----------ccccccccCCc
Q 024134 153 ESNPSRMSILFGHKFLTLKLYQL--SPPEDLELAKMLV----KPG---LLFTDELSKA-----------NEFSNEGYGSV 212 (272)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~----~~~---~~~~~~~~~~-----------~~~~~~~~~~~ 212 (272)
.+... ...-..+........ .+.+......... .+. ..+...+... .....+..+++
T Consensus 222 ~p~~~---~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~w~~~~g~~~~~~~~~~~~~n~~~~g~~~~~~~~~~L~~i~~ 298 (994)
T PRK07868 222 DPVKT---AKARVDFLRQLHDREALLPREQQRRFLESEGWIAWSGPAISELLKQFIAHNRMMTGGFAINGQMVTLADITC 298 (994)
T ss_pred ChhHH---HHHHHHHHHhcCchhhhccchhhHhHHHHhhccccchHHHHHHHHHHHHhCcccCceEEECCEEcchhhCCC
Confidence 00000 000000000000000 0000000000000 000 0011111110 01123677899
Q ss_pred eeEEEEeCCCCCccHHHHHHHHhcCCCceE-EEecCCCcccccC---CCchHHHHHHHHHHhh
Q 024134 213 KRDFVGSDKDNCIPKEFQQWMIQNNPVNEV-MAIKGADHMAMLS---KPQPLSDCFSQIAHKY 271 (272)
Q Consensus 213 P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~-~~~~~~gH~~~~~---~p~~~~~~i~~fl~~~ 271 (272)
|+|+|+|++|.++|++..+.+.+.++++++ .+++++||+.++- .++++...|.+||++.
T Consensus 299 P~L~i~G~~D~ivp~~~~~~l~~~i~~a~~~~~~~~~GH~g~~~g~~a~~~~wp~i~~wl~~~ 361 (994)
T PRK07868 299 PVLAFVGEVDDIGQPASVRGIRRAAPNAEVYESLIRAGHFGLVVGSRAAQQTWPTVADWVKWL 361 (994)
T ss_pred CEEEEEeCCCCCCCHHHHHHHHHhCCCCeEEEEeCCCCCEeeeechhhhhhhChHHHHHHHHh
Confidence 999999999999999999999999999987 6789999998763 4578889999999863
No 60
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=99.91 E-value=8.7e-23 Score=139.16 Aligned_cols=144 Identities=24% Similarity=0.361 Sum_probs=111.9
Q ss_pred eEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcCCCcEEEEEeCcchH
Q 024134 18 HFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSADEKVILVGHSFGGL 97 (272)
Q Consensus 18 ~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~lvG~S~Gg~ 97 (272)
+||++||++++...|..+.+.|+++||.|+++|+|++|.+.... ..+++.+++. ....+.++++++|||+||.
T Consensus 1 ~vv~~HG~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~----~~~~~~~~~~---~~~~~~~~i~l~G~S~Gg~ 73 (145)
T PF12695_consen 1 VVVLLHGWGGSRRDYQPLAEALAEQGYAVVAFDYPGHGDSDGAD----AVERVLADIR---AGYPDPDRIILIGHSMGGA 73 (145)
T ss_dssp EEEEECTTTTTTHHHHHHHHHHHHTTEEEEEESCTTSTTSHHSH----HHHHHHHHHH---HHHCTCCEEEEEEETHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEecCCCCccchhH----HHHHHHHHHH---hhcCCCCcEEEEEEccCcH
Confidence 68999999999999999999999999999999999999983211 2222222222 2122678999999999999
Q ss_pred HHHHHHhhCccceeeeeeeeccCCCCCCCchhhhhhcccCCchhhhhhhhhhccccCCCccchhhhhhhHHHHhhccCCC
Q 024134 98 SVALAADKFPHKISVAIFLTAFMPDTKHQPSYVVERFSESIPREERLDTQYSIIDESNPSRMSILFGHKFLTLKLYQLSP 177 (272)
Q Consensus 98 ~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (272)
+++.++.+. .+++++|++++. +. ...+
T Consensus 74 ~a~~~~~~~-~~v~~~v~~~~~-~~--------~~~~------------------------------------------- 100 (145)
T PF12695_consen 74 IAANLAARN-PRVKAVVLLSPY-PD--------SEDL------------------------------------------- 100 (145)
T ss_dssp HHHHHHHHS-TTESEEEEESES-SG--------CHHH-------------------------------------------
T ss_pred HHHHHhhhc-cceeEEEEecCc-cc--------hhhh-------------------------------------------
Confidence 999999988 789999999982 00 0000
Q ss_pred hhHHHHHHHhccCCccchHHhhhcccccccccCCceeEEEEeCCCCCccHHHHHHHHhcCC-CceEEEecCCCcc
Q 024134 178 PEDLELAKMLVKPGLLFTDELSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNNP-VNEVMAIKGADHM 251 (272)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~-~~~~~~~~~~gH~ 251 (272)
...+.|+++++|++|..++.+..+.+.+.++ +.+++++++++|+
T Consensus 101 ------------------------------~~~~~pv~~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~i~g~~H~ 145 (145)
T PF12695_consen 101 ------------------------------AKIRIPVLFIHGENDPLVPPEQVRRLYEALPGPKELYIIPGAGHF 145 (145)
T ss_dssp ------------------------------TTTTSEEEEEEETT-SSSHHHHHHHHHHHHCSSEEEEEETTS-TT
T ss_pred ------------------------------hccCCcEEEEEECCCCcCCHHHHHHHHHHcCCCcEEEEeCCCcCc
Confidence 0015699999999999999999999888776 5799999999996
No 61
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.91 E-value=2.9e-22 Score=150.56 Aligned_cols=243 Identities=18% Similarity=0.181 Sum_probs=143.7
Q ss_pred CCeEEEEecCCCcchhHHhhHHHHHhCC--CeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcCCCcEEEEEeC
Q 024134 16 QKHFVLVHGSNHGAWCWYKVKPRLEAAG--HRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSADEKVILVGHS 93 (272)
Q Consensus 16 ~~~vv~lhG~~~~~~~~~~~~~~l~~~g--~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~lvG~S 93 (272)
+|+++++||++++...|......+.... |+++.+|+||||.|. .. ..+...+++++..+++.+ +..+++++|||
T Consensus 21 ~~~i~~~hg~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~g~s~-~~--~~~~~~~~~~~~~~~~~~-~~~~~~l~G~S 96 (282)
T COG0596 21 GPPLVLLHGFPGSSSVWRPVFKVLPALAARYRVIAPDLRGHGRSD-PA--GYSLSAYADDLAALLDAL-GLEKVVLVGHS 96 (282)
T ss_pred CCeEEEeCCCCCchhhhHHHHHHhhccccceEEEEecccCCCCCC-cc--cccHHHHHHHHHHHHHHh-CCCceEEEEec
Confidence 5589999999999999987434443321 899999999999997 11 234455589999999999 77789999999
Q ss_pred cchHHHHHHHhhCccceeeeeeeeccCCCCCCCch----------hhhhhcccCCchhhhhhhhhhccccCCCccchhhh
Q 024134 94 FGGLSVALAADKFPHKISVAIFLTAFMPDTKHQPS----------YVVERFSESIPREERLDTQYSIIDESNPSRMSILF 163 (272)
Q Consensus 94 ~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (272)
+||.+++.++.++|++++++|++++.......... ........................ ....
T Consensus 97 ~Gg~~~~~~~~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 169 (282)
T COG0596 97 MGGAVALALALRHPDRVRGLVLIGPAPPPGLLEAALRQPAGAAPLAALADLLLGLDAAAFAALLAALGL-------LAAL 169 (282)
T ss_pred ccHHHHHHHHHhcchhhheeeEecCCCCcccccCccccCccccchhhhhhhhhccchhhhhhhhhcccc-------cccc
Confidence 99999999999999999999999976431100000 000000000000000000000000 0000
Q ss_pred hhhHH--HHhhccCCChhHHH-HHHHhcc-CCccchHHhhhcccccccccCCceeEEEEeCCCCCccHHHHHHHHhcCCC
Q 024134 164 GHKFL--TLKLYQLSPPEDLE-LAKMLVK-PGLLFTDELSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNNPV 239 (272)
Q Consensus 164 ~~~~~--~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~ 239 (272)
..... .............. ....... ....................+++|+++++|++|.+.|......+.+..++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~d~~~~~~~~~~~~~~~~~ 249 (282)
T COG0596 170 AAAARAGLAEALRAPLLGAAAAAFARAARADLAAALLALLDRDLRAALARITVPTLIIHGEDDPVVPAELARRLAAALPN 249 (282)
T ss_pred cccchhccccccccccchhHhhhhhhhcccccchhhhcccccccchhhccCCCCeEEEecCCCCcCCHHHHHHHHhhCCC
Confidence 00000 00000000000000 0000000 00000000001012233455589999999999977777666777777775
Q ss_pred -ceEEEecCCCcccccCCCchHHHHHHHHHH
Q 024134 240 -NEVMAIKGADHMAMLSKPQPLSDCFSQIAH 269 (272)
Q Consensus 240 -~~~~~~~~~gH~~~~~~p~~~~~~i~~fl~ 269 (272)
.++++++++||++++++|+.+.+.+.+|++
T Consensus 250 ~~~~~~~~~~gH~~~~~~p~~~~~~i~~~~~ 280 (282)
T COG0596 250 DARLVVIPGAGHFPHLEAPEAFAAALLAFLE 280 (282)
T ss_pred CceEEEeCCCCCcchhhcHHHHHHHHHHHHh
Confidence 899999999999999999999999888554
No 62
>KOG2564 consensus Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=99.90 E-value=5.1e-24 Score=150.26 Aligned_cols=105 Identities=22% Similarity=0.352 Sum_probs=90.4
Q ss_pred cCCCeEEEEecCCCcchhHHhhHHHHHhC-CCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHh--cCCCcEEEE
Q 024134 14 KKQKHFVLVHGSNHGAWCWYKVKPRLEAA-GHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASL--SADEKVILV 90 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~~~~~~~~l~~~-g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l--~~~~~~~lv 90 (272)
..+|.++++||.|.+.-.|..++..|..+ ..+|+++|+||||++...+....+.+.++.|+.++++.+ ....+++||
T Consensus 72 t~gpil~l~HG~G~S~LSfA~~a~el~s~~~~r~~a~DlRgHGeTk~~~e~dlS~eT~~KD~~~~i~~~fge~~~~iilV 151 (343)
T KOG2564|consen 72 TEGPILLLLHGGGSSALSFAIFASELKSKIRCRCLALDLRGHGETKVENEDDLSLETMSKDFGAVIKELFGELPPQIILV 151 (343)
T ss_pred CCccEEEEeecCcccchhHHHHHHHHHhhcceeEEEeeccccCccccCChhhcCHHHHHHHHHHHHHHHhccCCCceEEE
Confidence 47899999999999999999999888753 467888999999999887777789999999999999998 346789999
Q ss_pred EeCcchHHHHHHHhh--Cccceeeeeeeecc
Q 024134 91 GHSFGGLSVALAADK--FPHKISVAIFLTAF 119 (272)
Q Consensus 91 G~S~Gg~~a~~~a~~--~p~~v~~lvl~~~~ 119 (272)
||||||.++...|.. .|. +.+++.++-.
T Consensus 152 GHSmGGaIav~~a~~k~lps-l~Gl~viDVV 181 (343)
T KOG2564|consen 152 GHSMGGAIAVHTAASKTLPS-LAGLVVIDVV 181 (343)
T ss_pred eccccchhhhhhhhhhhchh-hhceEEEEEe
Confidence 999999999888754 455 8899988854
No 63
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=99.89 E-value=5e-22 Score=139.80 Aligned_cols=189 Identities=13% Similarity=0.167 Sum_probs=135.6
Q ss_pred CCeEEEEecCCCcchhHHhhHHHHHh-CCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhc-CCCcEEEEEeC
Q 024134 16 QKHFVLVHGSNHGAWCWYKVKPRLEA-AGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLS-ADEKVILVGHS 93 (272)
Q Consensus 16 ~~~vv~lhG~~~~~~~~~~~~~~l~~-~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~-~~~~~~lvG~S 93 (272)
.+++++.||...+......+...|.. -+++++.+|++|+|.|.+.+.+. +..+.++.+-+.++.-. +.++++|+|+|
T Consensus 60 ~~~lly~hGNa~Dlgq~~~~~~~l~~~ln~nv~~~DYSGyG~S~G~psE~-n~y~Di~avye~Lr~~~g~~~~Iil~G~S 138 (258)
T KOG1552|consen 60 HPTLLYSHGNAADLGQMVELFKELSIFLNCNVVSYDYSGYGRSSGKPSER-NLYADIKAVYEWLRNRYGSPERIILYGQS 138 (258)
T ss_pred ceEEEEcCCcccchHHHHHHHHHHhhcccceEEEEecccccccCCCcccc-cchhhHHHHHHHHHhhcCCCceEEEEEec
Confidence 48999999996666554445555543 36999999999999999887653 44444555555555553 46899999999
Q ss_pred cchHHHHHHHhhCccceeeeeeeeccCCCCCCCchhhhhhcccCCchhhhhhhhhhccccCCCccchhhhhhhHHHHhhc
Q 024134 94 FGGLSVALAADKFPHKISVAIFLTAFMPDTKHQPSYVVERFSESIPREERLDTQYSIIDESNPSRMSILFGHKFLTLKLY 173 (272)
Q Consensus 94 ~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (272)
+|+..++.+|.+.| ++++||.+|....... +........|
T Consensus 139 iGt~~tv~Lasr~~--~~alVL~SPf~S~~rv--------~~~~~~~~~~------------------------------ 178 (258)
T KOG1552|consen 139 IGTVPTVDLASRYP--LAAVVLHSPFTSGMRV--------AFPDTKTTYC------------------------------ 178 (258)
T ss_pred CCchhhhhHhhcCC--cceEEEeccchhhhhh--------hccCcceEEe------------------------------
Confidence 99999999999998 9999999997432110 0000000000
Q ss_pred cCCChhHHHHHHHhccCCccchHHhhhcccccccccCCceeEEEEeCCCCCccHHHHHHHHhcCCCc-eEEEecCCCccc
Q 024134 174 QLSPPEDLELAKMLVKPGLLFTDELSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNNPVN-EVMAIKGADHMA 252 (272)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~-~~~~~~~~gH~~ 252 (272)
+.........+.++||+|++||++|.++|....+++.+..++. +-.++.|+||.-
T Consensus 179 ------------------------~d~f~~i~kI~~i~~PVLiiHgtdDevv~~sHg~~Lye~~k~~~epl~v~g~gH~~ 234 (258)
T KOG1552|consen 179 ------------------------FDAFPNIEKISKITCPVLIIHGTDDEVVDFSHGKALYERCKEKVEPLWVKGAGHND 234 (258)
T ss_pred ------------------------eccccccCcceeccCCEEEEecccCceecccccHHHHHhccccCCCcEEecCCCcc
Confidence 0000013345567999999999999999999999999998865 888999999997
Q ss_pred ccCCCchHHHHHHHHHHh
Q 024134 253 MLSKPQPLSDCFSQIAHK 270 (272)
Q Consensus 253 ~~~~p~~~~~~i~~fl~~ 270 (272)
..- ..++.+.+..|+..
T Consensus 235 ~~~-~~~yi~~l~~f~~~ 251 (258)
T KOG1552|consen 235 IEL-YPEYIEHLRRFISS 251 (258)
T ss_pred ccc-CHHHHHHHHHHHHH
Confidence 444 45677888888764
No 64
>COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.89 E-value=3.8e-22 Score=139.52 Aligned_cols=225 Identities=12% Similarity=0.096 Sum_probs=152.2
Q ss_pred cCCCeEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHH-HhcCCCcEEEEEe
Q 024134 14 KKQKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILA-SLSADEKVILVGH 92 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~-~l~~~~~~~lvG~ 92 (272)
+.++.++++|-.|+++..|+.+...|.. ...++++++||+|..-..+.. .+++++++.+...+. -. ..+++.+.||
T Consensus 5 ~~~~~L~cfP~AGGsa~~fr~W~~~lp~-~iel~avqlPGR~~r~~ep~~-~di~~Lad~la~el~~~~-~d~P~alfGH 81 (244)
T COG3208 5 GARLRLFCFPHAGGSASLFRSWSRRLPA-DIELLAVQLPGRGDRFGEPLL-TDIESLADELANELLPPL-LDAPFALFGH 81 (244)
T ss_pred CCCceEEEecCCCCCHHHHHHHHhhCCc-hhheeeecCCCcccccCCccc-ccHHHHHHHHHHHhcccc-CCCCeeeccc
Confidence 4567899999999999999999999965 399999999999987544433 699999999998888 45 6789999999
Q ss_pred CcchHHHHHHHhhCcc---ceeeeeeeeccCCCCCCCchhhhhhcccCCchhhhhhhhhhccccCCCccchhhhhhhHHH
Q 024134 93 SFGGLSVALAADKFPH---KISVAIFLTAFMPDTKHQPSYVVERFSESIPREERLDTQYSIIDESNPSRMSILFGHKFLT 169 (272)
Q Consensus 93 S~Gg~~a~~~a~~~p~---~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (272)
||||++|.++|.+... ....+.+.++..|.... .+.........++.......+.+. ..+.
T Consensus 82 SmGa~lAfEvArrl~~~g~~p~~lfisg~~aP~~~~------~~~i~~~~D~~~l~~l~~lgG~p~-----e~le----- 145 (244)
T COG3208 82 SMGAMLAFEVARRLERAGLPPRALFISGCRAPHYDR------GKQIHHLDDADFLADLVDLGGTPP-----ELLE----- 145 (244)
T ss_pred chhHHHHHHHHHHHHHcCCCcceEEEecCCCCCCcc------cCCccCCCHHHHHHHHHHhCCCCh-----HHhc-----
Confidence 9999999999987532 25566666655442111 111111121223332222211110 0010
Q ss_pred HhhccCCChhHHHHHHHhccCCccchHHhhhcccccccccCCceeEEEEeCCCCCccHHHHHHHHhcCC-CceEEEecCC
Q 024134 170 LKLYQLSPPEDLELAKMLVKPGLLFTDELSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNNP-VNEVMAIKGA 248 (272)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~-~~~~~~~~~~ 248 (272)
..+.........+......+.+.... ...++||+.++.|++|..+..+....+.+... ..++++++ +
T Consensus 146 -------d~El~~l~LPilRAD~~~~e~Y~~~~----~~pl~~pi~~~~G~~D~~vs~~~~~~W~~~t~~~f~l~~fd-G 213 (244)
T COG3208 146 -------DPELMALFLPILRADFRALESYRYPP----PAPLACPIHAFGGEKDHEVSRDELGAWREHTKGDFTLRVFD-G 213 (244)
T ss_pred -------CHHHHHHHHHHHHHHHHHhcccccCC----CCCcCcceEEeccCcchhccHHHHHHHHHhhcCCceEEEec-C
Confidence 11112222222222111112222211 13359999999999999999999998888876 67999999 8
Q ss_pred CcccccCCCchHHHHHHHHHH
Q 024134 249 DHMAMLSKPQPLSDCFSQIAH 269 (272)
Q Consensus 249 gH~~~~~~p~~~~~~i~~fl~ 269 (272)
||+...++.+++.+.|.+.+.
T Consensus 214 gHFfl~~~~~~v~~~i~~~l~ 234 (244)
T COG3208 214 GHFFLNQQREEVLARLEQHLA 234 (244)
T ss_pred cceehhhhHHHHHHHHHHHhh
Confidence 999999999999999988885
No 65
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=99.89 E-value=3.4e-22 Score=145.46 Aligned_cols=242 Identities=14% Similarity=0.064 Sum_probs=140.1
Q ss_pred cCCCeEEEEecCCCcchh--HHhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHh---cCCCcEE
Q 024134 14 KKQKHFVLVHGSNHGAWC--WYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASL---SADEKVI 88 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~--~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l---~~~~~~~ 88 (272)
..+|.||++||+.+++.. -+.+++.+.++||.++++++|||+.+.......++.- ..+|+..+++.+ ....++.
T Consensus 73 ~~~P~vVl~HGL~G~s~s~y~r~L~~~~~~rg~~~Vv~~~Rgcs~~~n~~p~~yh~G-~t~D~~~~l~~l~~~~~~r~~~ 151 (345)
T COG0429 73 AKKPLVVLFHGLEGSSNSPYARGLMRALSRRGWLVVVFHFRGCSGEANTSPRLYHSG-ETEDIRFFLDWLKARFPPRPLY 151 (345)
T ss_pred cCCceEEEEeccCCCCcCHHHHHHHHHHHhcCCeEEEEecccccCCcccCcceeccc-chhHHHHHHHHHHHhCCCCceE
Confidence 456899999999766544 4678899999999999999999999876443323222 225666666555 4778999
Q ss_pred EEEeCcch-HHHHHHHhhCcc-ceeeeeeeeccCCCCCCCchhhhhhcccCCchhhhhhhhhhccccCCCccchhhhhhh
Q 024134 89 LVGHSFGG-LSVALAADKFPH-KISVAIFLTAFMPDTKHQPSYVVERFSESIPREERLDTQYSIIDESNPSRMSILFGHK 166 (272)
Q Consensus 89 lvG~S~Gg-~~a~~~a~~~p~-~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (272)
.+|.|+|| +++..++.+-.+ .+.+.+.++.+..... ....+..... ...+...+.... ......
T Consensus 152 avG~SLGgnmLa~ylgeeg~d~~~~aa~~vs~P~Dl~~-----~~~~l~~~~s-~~ly~r~l~~~L--------~~~~~~ 217 (345)
T COG0429 152 AVGFSLGGNMLANYLGEEGDDLPLDAAVAVSAPFDLEA-----CAYRLDSGFS-LRLYSRYLLRNL--------KRNAAR 217 (345)
T ss_pred EEEecccHHHHHHHHHhhccCcccceeeeeeCHHHHHH-----HHHHhcCchh-hhhhHHHHHHHH--------HHHHHH
Confidence 99999999 555555543222 2444444443321100 0000000000 000110000000 000000
Q ss_pred HHHHhhccCCChh---HHHHHHHhcc----------CCccchHHhhhcccccccccCCceeEEEEeCCCCCccHHHHHHH
Q 024134 167 FLTLKLYQLSPPE---DLELAKMLVK----------PGLLFTDELSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWM 233 (272)
Q Consensus 167 ~~~~~~~~~~~~~---~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~ 233 (272)
.+... ....+.. ..+....+.. ......+.+...+....+..|.+|+|+|++.+|++++++.....
T Consensus 218 kl~~l-~~~~p~~~~~~ik~~~ti~eFD~~~Tap~~Gf~da~dYYr~aSs~~~L~~Ir~PtLii~A~DDP~~~~~~iP~~ 296 (345)
T COG0429 218 KLKEL-EPSLPGTVLAAIKRCRTIREFDDLLTAPLHGFADAEDYYRQASSLPLLPKIRKPTLIINAKDDPFMPPEVIPKL 296 (345)
T ss_pred HHHhc-CcccCcHHHHHHHhhchHHhccceeeecccCCCcHHHHHHhccccccccccccceEEEecCCCCCCChhhCCcc
Confidence 00000 0001111 1111111111 11111344667777888899999999999999999999877666
Q ss_pred Hh-cCCCceEEEecCCCcccccC----CCc-hHHHHHHHHHHhh
Q 024134 234 IQ-NNPVNEVMAIKGADHMAMLS----KPQ-PLSDCFSQIAHKY 271 (272)
Q Consensus 234 ~~-~~~~~~~~~~~~~gH~~~~~----~p~-~~~~~i~~fl~~~ 271 (272)
.. ..|++.+..-+.+||..++. +|. ...+.+.+|++.+
T Consensus 297 ~~~~np~v~l~~t~~GGHvGfl~~~~~~~~~W~~~ri~~~l~~~ 340 (345)
T COG0429 297 QEMLNPNVLLQLTEHGGHVGFLGGKLLHPQMWLEQRILDWLDPF 340 (345)
T ss_pred hhcCCCceEEEeecCCceEEeccCccccchhhHHHHHHHHHHHH
Confidence 65 67899999999999999987 332 4567778887654
No 66
>KOG4667 consensus Predicted esterase [Lipid transport and metabolism]
Probab=99.89 E-value=2.3e-21 Score=131.76 Aligned_cols=210 Identities=19% Similarity=0.183 Sum_probs=134.7
Q ss_pred cCCCeEEEEecCCCcchh--HHhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcCCCc--EEE
Q 024134 14 KKQKHFVLVHGSNHGAWC--WYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSADEK--VIL 89 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~--~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~~~~--~~l 89 (272)
++...+|++||+-++... ...++..|++.|+.++.+|++|.|+|...... -.....++|+..+++++.+..+ .++
T Consensus 31 gs~e~vvlcHGfrS~Kn~~~~~~vA~~~e~~gis~fRfDF~GnGeS~gsf~~-Gn~~~eadDL~sV~q~~s~~nr~v~vi 109 (269)
T KOG4667|consen 31 GSTEIVVLCHGFRSHKNAIIMKNVAKALEKEGISAFRFDFSGNGESEGSFYY-GNYNTEADDLHSVIQYFSNSNRVVPVI 109 (269)
T ss_pred CCceEEEEeeccccccchHHHHHHHHHHHhcCceEEEEEecCCCCcCCcccc-CcccchHHHHHHHHHHhccCceEEEEE
Confidence 566799999999877654 46788999999999999999999999876543 2455667999999999944444 368
Q ss_pred EEeCcchHHHHHHHhhCccceeeeeeeeccCCCCCCCchhhhhhcccCCchhhhhhhhhhccccCCCccchhhhhhhHHH
Q 024134 90 VGHSFGGLSVALAADKFPHKISVAIFLTAFMPDTKHQPSYVVERFSESIPREERLDTQYSIIDESNPSRMSILFGHKFLT 169 (272)
Q Consensus 90 vG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (272)
+|||-||.+++.+|.++++ ++-+|-+++-......- ..++.. ..........+-.. .+........+.++-+.
T Consensus 110 ~gHSkGg~Vvl~ya~K~~d-~~~viNcsGRydl~~~I----~eRlg~-~~l~~ike~Gfid~-~~rkG~y~~rvt~eSlm 182 (269)
T KOG4667|consen 110 LGHSKGGDVVLLYASKYHD-IRNVINCSGRYDLKNGI----NERLGE-DYLERIKEQGFIDV-GPRKGKYGYRVTEESLM 182 (269)
T ss_pred EeecCccHHHHHHHHhhcC-chheEEcccccchhcch----hhhhcc-cHHHHHHhCCceec-CcccCCcCceecHHHHH
Confidence 9999999999999999987 77777666543221110 001100 00000111111000 00000001111111111
Q ss_pred HhhccCCChhHHHHHHHhccCCccchHHhhhcccccccccCCceeEEEEeCCCCCccHHHHHHHHhcCCCceEEEecCCC
Q 024134 170 LKLYQLSPPEDLELAKMLVKPGLLFTDELSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNNPVNEVMAIKGAD 249 (272)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~g 249 (272)
..+.. ++.... ... ..+||||-+||..|.++|.+.++.+++.+|+-++.++||+.
T Consensus 183 drLnt----------------------d~h~ac--lkI-d~~C~VLTvhGs~D~IVPve~AkefAk~i~nH~L~iIEgAD 237 (269)
T KOG4667|consen 183 DRLNT----------------------DIHEAC--LKI-DKQCRVLTVHGSEDEIVPVEDAKEFAKIIPNHKLEIIEGAD 237 (269)
T ss_pred HHHhc----------------------hhhhhh--cCc-CccCceEEEeccCCceeechhHHHHHHhccCCceEEecCCC
Confidence 11100 000000 001 12899999999999999999999999999999999999999
Q ss_pred cccccCC
Q 024134 250 HMAMLSK 256 (272)
Q Consensus 250 H~~~~~~ 256 (272)
|.....+
T Consensus 238 Hnyt~~q 244 (269)
T KOG4667|consen 238 HNYTGHQ 244 (269)
T ss_pred cCccchh
Confidence 9876543
No 67
>PRK11460 putative hydrolase; Provisional
Probab=99.87 E-value=4.8e-21 Score=139.67 Aligned_cols=173 Identities=10% Similarity=0.035 Sum_probs=115.5
Q ss_pred cCCCeEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCCCCCCCCcccc----------c---ccchhhchHHHHHHHHH
Q 024134 14 KKQKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQ----------D---VRSFYEYNEPLLEILAS 80 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~----------~---~~~~~~~~~~~~~~i~~ 80 (272)
..+++||++||+|++...|..+.+.|.+.++.+..++.+|...+..... . ..++.+..+.+.++++.
T Consensus 14 ~~~~~vIlLHG~G~~~~~~~~l~~~l~~~~~~~~~i~~~g~~~~~~~~g~~W~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 93 (232)
T PRK11460 14 PAQQLLLLFHGVGDNPVAMGEIGSWFAPAFPDALVVSVGGPEPSGNGAGRQWFSVQGITEDNRQARVAAIMPTFIETVRY 93 (232)
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHCCCCEEECCCCCCCcCCCCCcccccCCCCCccchHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999999999987766666666666543211100 0 01122223334444443
Q ss_pred h-----cCCCcEEEEEeCcchHHHHHHHhhCccceeeeeeeeccCCCCCCCchhhhhhcccCCchhhhhhhhhhccccCC
Q 024134 81 L-----SADEKVILVGHSFGGLSVALAADKFPHKISVAIFLTAFMPDTKHQPSYVVERFSESIPREERLDTQYSIIDESN 155 (272)
Q Consensus 81 l-----~~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (272)
+ ...++++++|||+||.+++.++.++|+.+.++|.+++..+. .
T Consensus 94 ~~~~~~~~~~~i~l~GfS~Gg~~al~~a~~~~~~~~~vv~~sg~~~~-----------~--------------------- 141 (232)
T PRK11460 94 WQQQSGVGASATALIGFSQGAIMALEAVKAEPGLAGRVIAFSGRYAS-----------L--------------------- 141 (232)
T ss_pred HHHhcCCChhhEEEEEECHHHHHHHHHHHhCCCcceEEEEecccccc-----------c---------------------
Confidence 2 13367999999999999999999999888887766542110 0
Q ss_pred CccchhhhhhhHHHHhhccCCChhHHHHHHHhccCCccchHHhhhcccccccccCCceeEEEEeCCCCCccHHHHHHHHh
Q 024134 156 PSRMSILFGHKFLTLKLYQLSPPEDLELAKMLVKPGLLFTDELSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQ 235 (272)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~ 235 (272)
+. ....+.|+++++|++|+++|.+.++++.+
T Consensus 142 ---------~~----------------------------------------~~~~~~pvli~hG~~D~vvp~~~~~~~~~ 172 (232)
T PRK11460 142 ---------PE----------------------------------------TAPTATTIHLIHGGEDPVIDVAHAVAAQE 172 (232)
T ss_pred ---------cc----------------------------------------cccCCCcEEEEecCCCCccCHHHHHHHHH
Confidence 00 00016799999999999999998887776
Q ss_pred cCC----CceEEEecCCCcccccCCCchHHHHHHHH
Q 024134 236 NNP----VNEVMAIKGADHMAMLSKPQPLSDCFSQI 267 (272)
Q Consensus 236 ~~~----~~~~~~~~~~gH~~~~~~p~~~~~~i~~f 267 (272)
.+. +++++.++++||.+..+.-+.+.+.+.++
T Consensus 173 ~L~~~g~~~~~~~~~~~gH~i~~~~~~~~~~~l~~~ 208 (232)
T PRK11460 173 ALISLGGDVTLDIVEDLGHAIDPRLMQFALDRLRYT 208 (232)
T ss_pred HHHHCCCCeEEEEECCCCCCCCHHHHHHHHHHHHHH
Confidence 653 46888999999998543333333333333
No 68
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=99.87 E-value=2.6e-21 Score=142.08 Aligned_cols=105 Identities=15% Similarity=0.140 Sum_probs=87.5
Q ss_pred CCeEEEEecCCCc----chhHHhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHh--cCCCcEEE
Q 024134 16 QKHFVLVHGSNHG----AWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASL--SADEKVIL 89 (272)
Q Consensus 16 ~~~vv~lhG~~~~----~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l--~~~~~~~l 89 (272)
+++|||+||++.. ...|..+++.|+++||+|+++|+||||.|...... .+++++++|+..+++.+ .+..++++
T Consensus 25 ~~~VlllHG~g~~~~~~~~~~~~la~~La~~Gy~Vl~~Dl~G~G~S~g~~~~-~~~~~~~~Dv~~ai~~L~~~~~~~v~L 103 (266)
T TIGR03101 25 RGVVIYLPPFAEEMNKSRRMVALQARAFAAGGFGVLQIDLYGCGDSAGDFAA-ARWDVWKEDVAAAYRWLIEQGHPPVTL 103 (266)
T ss_pred ceEEEEECCCcccccchhHHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccc-CCHHHHHHHHHHHHHHHHhcCCCCEEE
Confidence 5789999999864 34577788999989999999999999999765443 47778888877765554 15689999
Q ss_pred EEeCcchHHHHHHHhhCccceeeeeeeeccCC
Q 024134 90 VGHSFGGLSVALAADKFPHKISVAIFLTAFMP 121 (272)
Q Consensus 90 vG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~ 121 (272)
+||||||.+++.+|.++|++++++|+++|...
T Consensus 104 vG~SmGG~vAl~~A~~~p~~v~~lVL~~P~~~ 135 (266)
T TIGR03101 104 WGLRLGALLALDAANPLAAKCNRLVLWQPVVS 135 (266)
T ss_pred EEECHHHHHHHHHHHhCccccceEEEeccccc
Confidence 99999999999999999999999999998643
No 69
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=99.86 E-value=3.9e-20 Score=132.08 Aligned_cols=235 Identities=14% Similarity=0.100 Sum_probs=150.1
Q ss_pred CeEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcCCCcEEEEEeCcch
Q 024134 17 KHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSADEKVILVGHSFGG 96 (272)
Q Consensus 17 ~~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~lvG~S~Gg 96 (272)
.|||-+||.+++...|+.+.+.|.+.|.|+|.+++||+|.+++++...++-++...-+.++++.+.-.++++.+|||.||
T Consensus 36 gTVv~~hGsPGSH~DFkYi~~~l~~~~iR~I~iN~PGf~~t~~~~~~~~~n~er~~~~~~ll~~l~i~~~~i~~gHSrGc 115 (297)
T PF06342_consen 36 GTVVAFHGSPGSHNDFKYIRPPLDEAGIRFIGINYPGFGFTPGYPDQQYTNEERQNFVNALLDELGIKGKLIFLGHSRGC 115 (297)
T ss_pred eeEEEecCCCCCccchhhhhhHHHHcCeEEEEeCCCCCCCCCCCcccccChHHHHHHHHHHHHHcCCCCceEEEEeccch
Confidence 48999999999999999999999999999999999999999998887789999999999999999545778999999999
Q ss_pred HHHHHHHhhCccceeeeeeeeccCCCCCCCchhhhhhcccCCchhhhhhhhhhccccCCCccchhhhhhhHHHHhhccCC
Q 024134 97 LSVALAADKFPHKISVAIFLTAFMPDTKHQPSYVVERFSESIPREERLDTQYSIIDESNPSRMSILFGHKFLTLKLYQLS 176 (272)
Q Consensus 97 ~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (272)
-.|+.+|..+| +.++++++|+........... .++ ..-.++...+.. .....+....++..-.+..
T Consensus 116 enal~la~~~~--~~g~~lin~~G~r~HkgIrp~-~r~----~~i~~l~~~lp~-------~~~~~i~~~~y~~iG~KV~ 181 (297)
T PF06342_consen 116 ENALQLAVTHP--LHGLVLINPPGLRPHKGIRPL-SRM----ETINYLYDLLPR-------FIINAIMYFYYRMIGFKVS 181 (297)
T ss_pred HHHHHHHhcCc--cceEEEecCCccccccCcCHH-HHH----HHHHHHHHHhhH-------HHHHHHHHHHHHHhCeeec
Confidence 99999999996 679999999754332221110 000 001111110000 0001111111111111211
Q ss_pred ChhHHHHHHHhccCCccchHHhhhcccccccccCCceeEEEEeCCCCCccHHHHHHHHhcCC------------------
Q 024134 177 PPEDLELAKMLVKPGLLFTDELSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNNP------------------ 238 (272)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~------------------ 238 (272)
..+ +....+.......+.. ....+......++|+++++|.+|.++-.+...+++..+.
T Consensus 182 ~Ge--eA~na~r~m~~~df~~--q~~~I~~ln~~~ikvli~ygg~DhLIEeeI~~E~a~~f~~l~Hf~~~~~~seee~~k 257 (297)
T PF06342_consen 182 DGE--EAINAMRSMQNCDFEE--QKEYIDKLNKKPIKVLIAYGGKDHLIEEEISFEFAMKFKGLDHFNIEKEISEEEKPK 257 (297)
T ss_pred ChH--HHHHHHHHHHhcCHHH--HHHHHHHhccCCCcEEEEEcCcchhhHHHHHHHHHHHhCCccceeeecCCChhHHHH
Confidence 111 1111111000000000 011111222236899999999999987776655543321
Q ss_pred ---------CceEEEecCCCcccccCCCchHHHHHHHHHH
Q 024134 239 ---------VNEVMAIKGADHMAMLSKPQPLSDCFSQIAH 269 (272)
Q Consensus 239 ---------~~~~~~~~~~gH~~~~~~p~~~~~~i~~fl~ 269 (272)
...-+.+.+.||+.+-.+++-+++.+...|+
T Consensus 258 I~~~f~~~~~~~sv~f~~dgHf~qK~~A~lIA~~i~~mfe 297 (297)
T PF06342_consen 258 ILKSFASGQKGASVFFAKDGHFQQKFRADLIAEAIKKMFE 297 (297)
T ss_pred HHHHHhcCCceeEEEEecCChHHhHHHHHHHHHHHHHhhC
Confidence 1224567779999999999999998887663
No 70
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=99.86 E-value=6.8e-20 Score=138.41 Aligned_cols=249 Identities=14% Similarity=0.088 Sum_probs=145.9
Q ss_pred cCCCeEEEEecCCCcchh-H-HhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHh---cCCCcEE
Q 024134 14 KKQKHFVLVHGSNHGAWC-W-YKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASL---SADEKVI 88 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~-~-~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l---~~~~~~~ 88 (272)
+..|+||++||+.+++.. | +.++..+.++||+|++++.||+|.|+-.....++ ..+.+|+.++++++ ....+..
T Consensus 123 ~~~P~vvilpGltg~S~~~YVr~lv~~a~~~G~r~VVfN~RG~~g~~LtTpr~f~-ag~t~Dl~~~v~~i~~~~P~a~l~ 201 (409)
T KOG1838|consen 123 GTDPIVVILPGLTGGSHESYVRHLVHEAQRKGYRVVVFNHRGLGGSKLTTPRLFT-AGWTEDLREVVNHIKKRYPQAPLF 201 (409)
T ss_pred CCCcEEEEecCCCCCChhHHHHHHHHHHHhCCcEEEEECCCCCCCCccCCCceee-cCCHHHHHHHHHHHHHhCCCCceE
Confidence 466999999999766544 4 6788888899999999999999999766554332 33455666666655 3667899
Q ss_pred EEEeCcchHHHHHHHhhCcc---ceeeeeeeeccCCCCCCCchhhhhhcccCCchhhhhhhhhhccccCCCccchh-hhh
Q 024134 89 LVGHSFGGLSVALAADKFPH---KISVAIFLTAFMPDTKHQPSYVVERFSESIPREERLDTQYSIIDESNPSRMSI-LFG 164 (272)
Q Consensus 89 lvG~S~Gg~~a~~~a~~~p~---~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 164 (272)
.+|.||||++...+..+..+ .+.++.+.+|+-.. .............++...+............. .+.
T Consensus 202 avG~S~Gg~iL~nYLGE~g~~~~l~~a~~v~~Pwd~~-------~~~~~~~~~~~~~~y~~~l~~~l~~~~~~~r~~~~~ 274 (409)
T KOG1838|consen 202 AVGFSMGGNILTNYLGEEGDNTPLIAAVAVCNPWDLL-------AASRSIETPLYRRFYNRALTLNLKRIVLRHRHTLFE 274 (409)
T ss_pred EEEecchHHHHHHHhhhccCCCCceeEEEEeccchhh-------hhhhHHhcccchHHHHHHHHHhHHHHHhhhhhhhhh
Confidence 99999999999999887654 35566666665321 01111111111111111111100000000000 000
Q ss_pred hhHHHHhhccCCChhHH-HHHHHhccCCccchHHhhhcccccccccCCceeEEEEeCCCCCccHHH-HHHHHhcCCCceE
Q 024134 165 HKFLTLKLYQLSPPEDL-ELAKMLVKPGLLFTDELSKANEFSNEGYGSVKRDFVGSDKDNCIPKEF-QQWMIQNNPVNEV 242 (272)
Q Consensus 165 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~-~~~~~~~~~~~~~ 242 (272)
+....+...+.....+. +......-......+.+.+.........|++|+|+|++.+|+++|+.. -.......|++-+
T Consensus 275 ~~vd~d~~~~~~SvreFD~~~t~~~~gf~~~deYY~~aSs~~~v~~I~VP~L~ina~DDPv~p~~~ip~~~~~~np~v~l 354 (409)
T KOG1838|consen 275 DPVDFDVILKSRSVREFDEALTRPMFGFKSVDEYYKKASSSNYVDKIKVPLLCINAADDPVVPEEAIPIDDIKSNPNVLL 354 (409)
T ss_pred ccchhhhhhhcCcHHHHHhhhhhhhcCCCcHHHHHhhcchhhhcccccccEEEEecCCCCCCCcccCCHHHHhcCCcEEE
Confidence 00000111111111111 111111112222344456666777788899999999999999999853 3455566788888
Q ss_pred EEecCCCcccccCC----CchHHHH-HHHHHHh
Q 024134 243 MAIKGADHMAMLSK----PQPLSDC-FSQIAHK 270 (272)
Q Consensus 243 ~~~~~~gH~~~~~~----p~~~~~~-i~~fl~~ 270 (272)
++-..+||..++|. +....+. +.+|+..
T Consensus 355 ~~T~~GGHlgfleg~~p~~~~w~~~~l~ef~~~ 387 (409)
T KOG1838|consen 355 VITSHGGHLGFLEGLWPSARTWMDKLLVEFLGN 387 (409)
T ss_pred EEeCCCceeeeeccCCCccchhHHHHHHHHHHH
Confidence 99999999999986 2333333 7777654
No 71
>PLN02442 S-formylglutathione hydrolase
Probab=99.85 E-value=2.7e-19 Score=134.47 Aligned_cols=106 Identities=17% Similarity=0.148 Sum_probs=74.8
Q ss_pred cCCCeEEEEecCCCcchhHHh---hHHHHHhCCCeEEEEcCCCCCC-----CCc---c-c---------c-----c--cc
Q 024134 14 KKQKHFVLVHGSNHGAWCWYK---VKPRLEAAGHRVTAMDLAASGI-----NMK---K-I---------Q-----D--VR 65 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~~~~---~~~~l~~~g~~v~~~d~~G~G~-----s~~---~-~---------~-----~--~~ 65 (272)
...|+|+|+||++++...|.. +...+...|+.|+.+|..++|. +.. . . . . .+
T Consensus 45 ~~~Pvv~~lHG~~~~~~~~~~~~~~~~~~~~~g~~Vv~pd~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (283)
T PLN02442 45 GKVPVLYWLSGLTCTDENFIQKSGAQRAAAARGIALVAPDTSPRGLNVEGEADSWDFGVGAGFYLNATQEKWKNWRMYDY 124 (283)
T ss_pred CCCCEEEEecCCCcChHHHHHhhhHHHHHhhcCeEEEecCCCCCCCCCCCCccccccCCCcceeeccccCCCcccchhhh
Confidence 356899999999988877743 4466667799999999887762 110 0 0 0 0 00
Q ss_pred chhhchHHHHHHHHHhcCCCcEEEEEeCcchHHHHHHHhhCccceeeeeeeeccC
Q 024134 66 SFYEYNEPLLEILASLSADEKVILVGHSFGGLSVALAADKFPHKISVAIFLTAFM 120 (272)
Q Consensus 66 ~~~~~~~~~~~~i~~l~~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~ 120 (272)
-.+++.+.+....+.+ +.++++++||||||..++.++.++|+++++++.+++..
T Consensus 125 ~~~~l~~~i~~~~~~~-~~~~~~i~G~S~GG~~a~~~a~~~p~~~~~~~~~~~~~ 178 (283)
T PLN02442 125 VVKELPKLLSDNFDQL-DTSRASIFGHSMGGHGALTIYLKNPDKYKSVSAFAPIA 178 (283)
T ss_pred HHHHHHHHHHHHHHhc-CCCceEEEEEChhHHHHHHHHHhCchhEEEEEEECCcc
Confidence 1222233333333444 66889999999999999999999999999999998864
No 72
>KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only]
Probab=99.84 E-value=1.6e-20 Score=127.93 Aligned_cols=199 Identities=14% Similarity=0.164 Sum_probs=137.2
Q ss_pred cCCCeEEEEecCCCcchhHHhhHHHHH-hCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHh-----cCCCcE
Q 024134 14 KKQKHFVLVHGSNHGAWCWYKVKPRLE-AAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASL-----SADEKV 87 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~~~~~~~~l~-~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l-----~~~~~~ 87 (272)
.+.|+++++||..++-...-+.+.-+- .-+.+|+.+++||+|.|.+.+.+ +.+.-|-..+++++ ....++
T Consensus 76 ~S~pTlLyfh~NAGNmGhr~~i~~~fy~~l~mnv~ivsYRGYG~S~GspsE----~GL~lDs~avldyl~t~~~~dktki 151 (300)
T KOG4391|consen 76 SSRPTLLYFHANAGNMGHRLPIARVFYVNLKMNVLIVSYRGYGKSEGSPSE----EGLKLDSEAVLDYLMTRPDLDKTKI 151 (300)
T ss_pred CCCceEEEEccCCCcccchhhHHHHHHHHcCceEEEEEeeccccCCCCccc----cceeccHHHHHHHHhcCccCCcceE
Confidence 578999999999988877665555443 34689999999999999887643 22333444555555 256789
Q ss_pred EEEEeCcchHHHHHHHhhCccceeeeeeeeccCCCCCCCchhhhhhcccCCchhhhhhhhhhccccCCCccchhhhhhhH
Q 024134 88 ILVGHSFGGLSVALAADKFPHKISVAIFLTAFMPDTKHQPSYVVERFSESIPREERLDTQYSIIDESNPSRMSILFGHKF 167 (272)
Q Consensus 88 ~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (272)
++.|-|+||.+|+.+|++..+++.++|+-+.+...+... -... +. +.-..
T Consensus 152 vlfGrSlGGAvai~lask~~~ri~~~ivENTF~SIp~~~-----i~~v------------~p-------------~~~k~ 201 (300)
T KOG4391|consen 152 VLFGRSLGGAVAIHLASKNSDRISAIIVENTFLSIPHMA-----IPLV------------FP-------------FPMKY 201 (300)
T ss_pred EEEecccCCeeEEEeeccchhheeeeeeechhccchhhh-----hhee------------cc-------------chhhH
Confidence 999999999999999999999999999998764321110 0000 00 00000
Q ss_pred HHHhhccCCChhHHHHHHHhccCCccchHHhhhcccccccccCCceeEEEEeCCCCCccHHHHHHHHhcCC--CceEEEe
Q 024134 168 LTLKLYQLSPPEDLELAKMLVKPGLLFTDELSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNNP--VNEVMAI 245 (272)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~--~~~~~~~ 245 (272)
+....+. ..+.. .......+.|.|+|.|.+|.++||.+.+++.+.+| ..++..+
T Consensus 202 i~~lc~k-----------n~~~S-------------~~ki~~~~~P~LFiSGlkDelVPP~~Mr~Ly~~c~S~~Krl~eF 257 (300)
T KOG4391|consen 202 IPLLCYK-----------NKWLS-------------YRKIGQCRMPFLFISGLKDELVPPVMMRQLYELCPSRTKRLAEF 257 (300)
T ss_pred HHHHHHH-----------hhhcc-------------hhhhccccCceEEeecCccccCCcHHHHHHHHhCchhhhhheeC
Confidence 0000000 00000 00011237899999999999999999999999987 4589999
Q ss_pred cCCCcccccCCCchHHHHHHHHHHhh
Q 024134 246 KGADHMAMLSKPQPLSDCFSQIAHKY 271 (272)
Q Consensus 246 ~~~gH~~~~~~p~~~~~~i~~fl~~~ 271 (272)
|++.|.-.+- -+-..++|.+||.+.
T Consensus 258 P~gtHNDT~i-~dGYfq~i~dFlaE~ 282 (300)
T KOG4391|consen 258 PDGTHNDTWI-CDGYFQAIEDFLAEV 282 (300)
T ss_pred CCCccCceEE-eccHHHHHHHHHHHh
Confidence 9999986554 356789999999875
No 73
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=99.83 E-value=4.3e-20 Score=133.82 Aligned_cols=192 Identities=14% Similarity=0.086 Sum_probs=116.0
Q ss_pred HHhhHHHHHhCCCeEEEEcCCCCCCCCcccc---cccchhhchHHHHHHHHHh-----cCCCcEEEEEeCcchHHHHHHH
Q 024134 32 WYKVKPRLEAAGHRVTAMDLAASGINMKKIQ---DVRSFYEYNEPLLEILASL-----SADEKVILVGHSFGGLSVALAA 103 (272)
Q Consensus 32 ~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~---~~~~~~~~~~~~~~~i~~l-----~~~~~~~lvG~S~Gg~~a~~~a 103 (272)
|......|+++||.|+.+|+||.+....... ....-...++|+.+.++.+ .+.+++.++|+|+||.+++.++
T Consensus 3 f~~~~~~la~~Gy~v~~~~~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~iD~~ri~i~G~S~GG~~a~~~~ 82 (213)
T PF00326_consen 3 FNWNAQLLASQGYAVLVPNYRGSGGYGKDFHEAGRGDWGQADVDDVVAAIEYLIKQYYIDPDRIGIMGHSYGGYLALLAA 82 (213)
T ss_dssp -SHHHHHHHTTT-EEEEEE-TTSSSSHHHHHHTTTTGTTHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETHHHHHHHHHH
T ss_pred eeHHHHHHHhCCEEEEEEcCCCCCccchhHHHhhhccccccchhhHHHHHHHHhccccccceeEEEEcccccccccchhh
Confidence 4456677889999999999999886433211 1011123355566555555 2457899999999999999999
Q ss_pred hhCccceeeeeeeeccCCCCCCCchhhhhhcccCCchhhhhhhhhhccccCCCccchhhhhhhHHHHhhccCCChhHHHH
Q 024134 104 DKFPHKISVAIFLTAFMPDTKHQPSYVVERFSESIPREERLDTQYSIIDESNPSRMSILFGHKFLTLKLYQLSPPEDLEL 183 (272)
Q Consensus 104 ~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (272)
.++|++++++|..+|.......... ... +....................
T Consensus 83 ~~~~~~f~a~v~~~g~~d~~~~~~~---~~~----------------------------~~~~~~~~~~~~~~~~~~~~~ 131 (213)
T PF00326_consen 83 TQHPDRFKAAVAGAGVSDLFSYYGT---TDI----------------------------YTKAEYLEYGDPWDNPEFYRE 131 (213)
T ss_dssp HHTCCGSSEEEEESE-SSTTCSBHH---TCC----------------------------HHHGHHHHHSSTTTSHHHHHH
T ss_pred cccceeeeeeeccceecchhccccc---ccc----------------------------cccccccccCccchhhhhhhh
Confidence 9999999999999886432211100 000 000000000000001111111
Q ss_pred HHHhccCCccchHHhhhccccccccc--CCceeEEEEeCCCCCccHHHHHHHHhcC----CCceEEEecCCCccccc-CC
Q 024134 184 AKMLVKPGLLFTDELSKANEFSNEGY--GSVKRDFVGSDKDNCIPKEFQQWMIQNN----PVNEVMAIKGADHMAML-SK 256 (272)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~P~l~i~g~~D~~~~~~~~~~~~~~~----~~~~~~~~~~~gH~~~~-~~ 256 (272)
..+...... +++|+|+++|++|..+|++.+..+.+.+ ..++++++|++||.+.. +.
T Consensus 132 -----------------~s~~~~~~~~~~~~P~li~hG~~D~~Vp~~~s~~~~~~L~~~g~~~~~~~~p~~gH~~~~~~~ 194 (213)
T PF00326_consen 132 -----------------LSPISPADNVQIKPPVLIIHGENDPRVPPSQSLRLYNALRKAGKPVELLIFPGEGHGFGNPEN 194 (213)
T ss_dssp -----------------HHHGGGGGGCGGGSEEEEEEETTBSSSTTHHHHHHHHHHHHTTSSEEEEEETT-SSSTTSHHH
T ss_pred -----------------hccccccccccCCCCEEEEccCCCCccCHHHHHHHHHHHHhcCCCEEEEEcCcCCCCCCCchh
Confidence 111111112 4899999999999999998777776554 35899999999996543 34
Q ss_pred CchHHHHHHHHHHhh
Q 024134 257 PQPLSDCFSQIAHKY 271 (272)
Q Consensus 257 p~~~~~~i~~fl~~~ 271 (272)
..+..+.+.+|++++
T Consensus 195 ~~~~~~~~~~f~~~~ 209 (213)
T PF00326_consen 195 RRDWYERILDFFDKY 209 (213)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 457788888998875
No 74
>PLN00021 chlorophyllase
Probab=99.82 E-value=1.4e-18 Score=131.20 Aligned_cols=106 Identities=20% Similarity=0.106 Sum_probs=77.8
Q ss_pred cCCCeEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHh------cCCCcE
Q 024134 14 KKQKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASL------SADEKV 87 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l------~~~~~~ 87 (272)
+..|+|||+||++.+...|..+++.|+++||.|+++|++|++.+.. .....+..+..+.+.+.++.+ .+.+++
T Consensus 50 g~~PvVv~lHG~~~~~~~y~~l~~~Las~G~~VvapD~~g~~~~~~-~~~i~d~~~~~~~l~~~l~~~l~~~~~~d~~~v 128 (313)
T PLN00021 50 GTYPVLLFLHGYLLYNSFYSQLLQHIASHGFIVVAPQLYTLAGPDG-TDEIKDAAAVINWLSSGLAAVLPEGVRPDLSKL 128 (313)
T ss_pred CCCCEEEEECCCCCCcccHHHHHHHHHhCCCEEEEecCCCcCCCCc-hhhHHHHHHHHHHHHhhhhhhcccccccChhhe
Confidence 5568999999999999999999999999999999999998754321 111112222233333322221 134689
Q ss_pred EEEEeCcchHHHHHHHhhCcc-----ceeeeeeeeccC
Q 024134 88 ILVGHSFGGLSVALAADKFPH-----KISVAIFLTAFM 120 (272)
Q Consensus 88 ~lvG~S~Gg~~a~~~a~~~p~-----~v~~lvl~~~~~ 120 (272)
+++|||+||.+++.+|..+++ +++++|+++|..
T Consensus 129 ~l~GHS~GG~iA~~lA~~~~~~~~~~~v~ali~ldPv~ 166 (313)
T PLN00021 129 ALAGHSRGGKTAFALALGKAAVSLPLKFSALIGLDPVD 166 (313)
T ss_pred EEEEECcchHHHHHHHhhccccccccceeeEEeecccc
Confidence 999999999999999998874 588999998863
No 75
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=99.82 E-value=2.8e-18 Score=128.75 Aligned_cols=107 Identities=18% Similarity=0.201 Sum_probs=77.3
Q ss_pred cCCCeEEEEecCCCcchhHHhh--HHHH-HhCCCeEEEEcC--CCCCCCCccc-------------------ccccchhh
Q 024134 14 KKQKHFVLVHGSNHGAWCWYKV--KPRL-EAAGHRVTAMDL--AASGINMKKI-------------------QDVRSFYE 69 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~~~~~--~~~l-~~~g~~v~~~d~--~G~G~s~~~~-------------------~~~~~~~~ 69 (272)
++.|+|+++||++++...|... ...+ .+.|+.|+++|. +|+|.+.... ...++..+
T Consensus 40 ~~~P~vvllHG~~~~~~~~~~~~~~~~la~~~g~~Vv~Pd~~~~g~~~~~~~~~w~~g~~~~~~~d~~~~~~~~~~~~~~ 119 (275)
T TIGR02821 40 GPVPVLWYLSGLTCTHENFMIKAGAQRFAAEHGLALVAPDTSPRGTGIAGEDDAWDFGKGAGFYVDATEEPWSQHYRMYS 119 (275)
T ss_pred CCCCEEEEccCCCCCccHHHhhhHHHHHHhhcCcEEEEeCCCCCcCCCCCCcccccccCCccccccCCcCcccccchHHH
Confidence 3468999999999998887532 3344 446899999998 5555332100 00122233
Q ss_pred -chHHHHHHHHHh--cCCCcEEEEEeCcchHHHHHHHhhCccceeeeeeeeccC
Q 024134 70 -YNEPLLEILASL--SADEKVILVGHSFGGLSVALAADKFPHKISVAIFLTAFM 120 (272)
Q Consensus 70 -~~~~~~~~i~~l--~~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~ 120 (272)
+++++..+++.. .+.++++++||||||.+++.++.++|+.+++++++++..
T Consensus 120 ~~~~~l~~~~~~~~~~~~~~~~~~G~S~GG~~a~~~a~~~p~~~~~~~~~~~~~ 173 (275)
T TIGR02821 120 YIVQELPALVAAQFPLDGERQGITGHSMGGHGALVIALKNPDRFKSVSAFAPIV 173 (275)
T ss_pred HHHHHHHHHHHhhCCCCCCceEEEEEChhHHHHHHHHHhCcccceEEEEECCcc
Confidence 356777777762 155789999999999999999999999999999998864
No 76
>COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism]
Probab=99.82 E-value=6.7e-19 Score=130.57 Aligned_cols=253 Identities=13% Similarity=0.076 Sum_probs=151.7
Q ss_pred CCCeEEEEecCCCcchhHHh-------hHHHH-------HhCCCeEEEEcCCCCC-CCCcccc------------cccch
Q 024134 15 KQKHFVLVHGSNHGAWCWYK-------VKPRL-------EAAGHRVTAMDLAASG-INMKKIQ------------DVRSF 67 (272)
Q Consensus 15 ~~~~vv~lhG~~~~~~~~~~-------~~~~l-------~~~g~~v~~~d~~G~G-~s~~~~~------------~~~~~ 67 (272)
....|+++|++.+++..... +.+.| ....|.||+.|-.|.+ .|++|.. ...++
T Consensus 50 ~~NaVli~HaLtG~~h~~~~~~~~~~GWW~~liGpG~~iDt~r~fvIc~NvlG~c~GStgP~s~~p~g~~yg~~FP~~ti 129 (368)
T COG2021 50 KDNAVLICHALTGDSHAAGTADDGEKGWWDDLIGPGKPIDTERFFVICTNVLGGCKGSTGPSSINPGGKPYGSDFPVITI 129 (368)
T ss_pred CCceEEEeccccCcccccccCCCCCCccHHHhcCCCCCCCccceEEEEecCCCCCCCCCCCCCcCCCCCccccCCCcccH
Confidence 35689999999986654321 23333 2334899999998876 4443321 34688
Q ss_pred hhchHHHHHHHHHhcCCCcEE-EEEeCcchHHHHHHHhhCccceeeeeeeeccCCCCCCCchhhhhhcccC--Cchhhhh
Q 024134 68 YEYNEPLLEILASLSADEKVI-LVGHSFGGLSVALAADKFPHKISVAIFLTAFMPDTKHQPSYVVERFSES--IPREERL 144 (272)
Q Consensus 68 ~~~~~~~~~~i~~l~~~~~~~-lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 144 (272)
.|++..-..+++++ +++++. +||-||||+.+++++..||++|+++|.+++......... ......+. .....|.
T Consensus 130 ~D~V~aq~~ll~~L-GI~~l~avvGgSmGGMqaleWa~~yPd~V~~~i~ia~~~r~s~~~i--a~~~~~r~AI~~DP~~n 206 (368)
T COG2021 130 RDMVRAQRLLLDAL-GIKKLAAVVGGSMGGMQALEWAIRYPDRVRRAIPIATAARLSAQNI--AFNEVQRQAIEADPDWN 206 (368)
T ss_pred HHHHHHHHHHHHhc-CcceEeeeeccChHHHHHHHHHHhChHHHhhhheecccccCCHHHH--HHHHHHHHHHHhCCCcc
Confidence 89999888999999 999987 899999999999999999999999999988643322111 11111100 0001110
Q ss_pred hhhhhccccCCCc-------cchhhhhhhHHHHhhccCC-----C----hhHHHH--------HHHhccCCccc--hHHh
Q 024134 145 DTQYSIIDESNPS-------RMSILFGHKFLTLKLYQLS-----P----PEDLEL--------AKMLVKPGLLF--TDEL 198 (272)
Q Consensus 145 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~-----~----~~~~~~--------~~~~~~~~~~~--~~~~ 198 (272)
...+.....+... ....+.++..+.+.+.+.. . ....+. ....+..+... .+.+
T Consensus 207 ~G~Y~~~~~P~~GL~~AR~l~~ltYrS~~~~~~rF~r~~~~~~~~~~~~~f~vESYL~~qg~kf~~rfDaNsYL~lt~al 286 (368)
T COG2021 207 GGDYYEGTQPERGLRLARMLAHLTYRSEEELDERFGRRLQADPLRGGGVRFAVESYLDYQGDKFVARFDANSYLYLTRAL 286 (368)
T ss_pred CCCccCCCCcchhHHHHHHHHHHHccCHHHHHHHhcccccccccCCCchhHHHHHHHHHHHHHHHhccCcchHHHHHHHH
Confidence 0000000000000 0011122233333222211 0 000000 00011111111 2222
Q ss_pred hhccccc-------ccccCCceeEEEEeCCCCCccHHHHHHHHhcCCCce-EEEec-CCCcccccCCCchHHHHHHHHHH
Q 024134 199 SKANEFS-------NEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNNPVNE-VMAIK-GADHMAMLSKPQPLSDCFSQIAH 269 (272)
Q Consensus 199 ~~~~~~~-------~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~-~~~~~-~~gH~~~~~~p~~~~~~i~~fl~ 269 (272)
...+... .+..+++|++++.-+.|...|++..+.+.+.++.+. +++++ ..||..++...+.+...|.+||+
T Consensus 287 d~~D~s~~~~~l~~al~~i~~~~lv~gi~sD~lfp~~~~~~~~~~L~~~~~~~~i~S~~GHDaFL~e~~~~~~~i~~fL~ 366 (368)
T COG2021 287 DYHDVSRGRGDLTAALARIKAPVLVVGITSDWLFPPELQRALAEALPAAGALREIDSPYGHDAFLVESEAVGPLIRKFLA 366 (368)
T ss_pred HhcCCCCCcCcHHHHHhcCccCEEEEEecccccCCHHHHHHHHHhccccCceEEecCCCCchhhhcchhhhhHHHHHHhh
Confidence 2222222 266789999999999999999999999999998776 76664 67999999888899999999997
Q ss_pred h
Q 024134 270 K 270 (272)
Q Consensus 270 ~ 270 (272)
.
T Consensus 367 ~ 367 (368)
T COG2021 367 L 367 (368)
T ss_pred c
Confidence 5
No 77
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=99.81 E-value=9.8e-19 Score=126.65 Aligned_cols=178 Identities=16% Similarity=0.178 Sum_probs=107.6
Q ss_pred cCCCeEEEEecCCCcchhHHhhHH-HHHhCCCeEEEEcCCC------CCC---CCcc-----cc---cccchhhchHHHH
Q 024134 14 KKQKHFVLVHGSNHGAWCWYKVKP-RLEAAGHRVTAMDLAA------SGI---NMKK-----IQ---DVRSFYEYNEPLL 75 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~~~~~~~-~l~~~g~~v~~~d~~G------~G~---s~~~-----~~---~~~~~~~~~~~~~ 75 (272)
...++|||+||+|++...|..+.. .+.....+++++.-|. .|. +..+ .. ....+.+.++.+.
T Consensus 12 ~~~~lvi~LHG~G~~~~~~~~~~~~~~~~~~~~~i~p~ap~~~~~~~~g~~~~~Wf~~~~~~~~~~~~~~~i~~s~~~l~ 91 (216)
T PF02230_consen 12 KAKPLVILLHGYGDSEDLFALLAELNLALPNTRFISPRAPSRPVTVPGGYRMPAWFDIYDFDPEGPEDEAGIEESAERLD 91 (216)
T ss_dssp T-SEEEEEE--TTS-HHHHHHHHHHHTCSTTEEEEEE---EEE-GGGTT-EEE-SS-BSCSSSSSEB-HHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCcchhHHHHhhcccCCceEEEeccCCCCCcccccccCCCceeeccCCCcchhhhHHHHHHHHHHHH
Confidence 456899999999999977766555 2222346677765442 222 1110 00 1123344455566
Q ss_pred HHHHHh----cCCCcEEEEEeCcchHHHHHHHhhCccceeeeeeeeccCCCCCCCchhhhhhcccCCchhhhhhhhhhcc
Q 024134 76 EILASL----SADEKVILVGHSFGGLSVALAADKFPHKISVAIFLTAFMPDTKHQPSYVVERFSESIPREERLDTQYSII 151 (272)
Q Consensus 76 ~~i~~l----~~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (272)
++++.. ...+++++.|+|.||++++.++.++|+.+.++|.+++..+...... ..
T Consensus 92 ~li~~~~~~~i~~~ri~l~GFSQGa~~al~~~l~~p~~~~gvv~lsG~~~~~~~~~-----~~----------------- 149 (216)
T PF02230_consen 92 ELIDEEVAYGIDPSRIFLGGFSQGAAMALYLALRYPEPLAGVVALSGYLPPESELE-----DR----------------- 149 (216)
T ss_dssp HHHHHHHHTT--GGGEEEEEETHHHHHHHHHHHCTSSTSSEEEEES---TTGCCCH-----CC-----------------
T ss_pred HHHHHHHHcCCChhheehhhhhhHHHHHHHHHHHcCcCcCEEEEeecccccccccc-----cc-----------------
Confidence 666643 2457899999999999999999999999999999998754221100 00
Q ss_pred ccCCCccchhhhhhhHHHHhhccCCChhHHHHHHHhccCCccchHHhhhcccccccccCCceeEEEEeCCCCCccHHHHH
Q 024134 152 DESNPSRMSILFGHKFLTLKLYQLSPPEDLELAKMLVKPGLLFTDELSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQ 231 (272)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~ 231 (272)
. ....++|++++||++|+++|.+.++
T Consensus 150 ----------------------------------------------------~--~~~~~~pi~~~hG~~D~vvp~~~~~ 175 (216)
T PF02230_consen 150 ----------------------------------------------------P--EALAKTPILIIHGDEDPVVPFEWAE 175 (216)
T ss_dssp ----------------------------------------------------H--CCCCTS-EEEEEETT-SSSTHHHHH
T ss_pred ----------------------------------------------------c--cccCCCcEEEEecCCCCcccHHHHH
Confidence 0 0001679999999999999988776
Q ss_pred HHHhcC----CCceEEEecCCCcccccCCCchHHHHHHHHHHhh
Q 024134 232 WMIQNN----PVNEVMAIKGADHMAMLSKPQPLSDCFSQIAHKY 271 (272)
Q Consensus 232 ~~~~~~----~~~~~~~~~~~gH~~~~~~p~~~~~~i~~fl~~~ 271 (272)
...+.+ .+++++.++++||.+. .+..+.+.+||++.
T Consensus 176 ~~~~~L~~~~~~v~~~~~~g~gH~i~----~~~~~~~~~~l~~~ 215 (216)
T PF02230_consen 176 KTAEFLKAAGANVEFHEYPGGGHEIS----PEELRDLREFLEKH 215 (216)
T ss_dssp HHHHHHHCTT-GEEEEEETT-SSS------HHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCEEEEEcCCCCCCCC----HHHHHHHHHHHhhh
Confidence 666544 3578999999999874 35667788888864
No 78
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=99.81 E-value=3.6e-19 Score=147.19 Aligned_cols=206 Identities=15% Similarity=0.077 Sum_probs=131.5
Q ss_pred CeEEEEecCCCcchh--HHhhHHHHHhCCCeEEEEcCCCCCCCCc---c--c--ccccchhhchHHHHHHHHHhc--CCC
Q 024134 17 KHFVLVHGSNHGAWC--WYKVKPRLEAAGHRVTAMDLAASGINMK---K--I--QDVRSFYEYNEPLLEILASLS--ADE 85 (272)
Q Consensus 17 ~~vv~lhG~~~~~~~--~~~~~~~l~~~g~~v~~~d~~G~G~s~~---~--~--~~~~~~~~~~~~~~~~i~~l~--~~~ 85 (272)
|+||++||.+..... |......|+.+||.|+.+++||.+.-.. . . ......+|+.+.+. ++.... +.+
T Consensus 395 P~i~~~hGGP~~~~~~~~~~~~q~~~~~G~~V~~~n~RGS~GyG~~F~~~~~~~~g~~~~~D~~~~~~-~l~~~~~~d~~ 473 (620)
T COG1506 395 PLIVYIHGGPSAQVGYSFNPEIQVLASAGYAVLAPNYRGSTGYGREFADAIRGDWGGVDLEDLIAAVD-ALVKLPLVDPE 473 (620)
T ss_pred CEEEEeCCCCccccccccchhhHHHhcCCeEEEEeCCCCCCccHHHHHHhhhhccCCccHHHHHHHHH-HHHhCCCcChH
Confidence 799999999755544 6677888999999999999997554211 1 1 11135555555555 444442 345
Q ss_pred cEEEEEeCcchHHHHHHHhhCccceeeeeeeeccCCCCCCCchhhhhhcccCCchhhhhhhhhhccccCCCccchhhhhh
Q 024134 86 KVILVGHSFGGLSVALAADKFPHKISVAIFLTAFMPDTKHQPSYVVERFSESIPREERLDTQYSIIDESNPSRMSILFGH 165 (272)
Q Consensus 86 ~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (272)
++.+.|||.||.+++.++.+.| ++++.+...+......... .. . ..+... .
T Consensus 474 ri~i~G~SyGGymtl~~~~~~~-~f~a~~~~~~~~~~~~~~~-----~~--~---~~~~~~------------------~ 524 (620)
T COG1506 474 RIGITGGSYGGYMTLLAATKTP-RFKAAVAVAGGVDWLLYFG-----ES--T---EGLRFD------------------P 524 (620)
T ss_pred HeEEeccChHHHHHHHHHhcCc-hhheEEeccCcchhhhhcc-----cc--c---hhhcCC------------------H
Confidence 8999999999999999998888 6777766665422110000 00 0 000000 0
Q ss_pred hHHHHhhccCCChhHHHHHHHhccCCccchHHhhhcccccccccCCceeEEEEeCCCCCccHHHHHHHHhcCC----Cce
Q 024134 166 KFLTLKLYQLSPPEDLELAKMLVKPGLLFTDELSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNNP----VNE 241 (272)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~----~~~ 241 (272)
. ..... +. . -...+....+.....++++|+|+|||++|..+|.+.+.++.+.+. .++
T Consensus 525 ~---~~~~~--~~-------------~-~~~~~~~~sp~~~~~~i~~P~LliHG~~D~~v~~~q~~~~~~aL~~~g~~~~ 585 (620)
T COG1506 525 E---ENGGG--PP-------------E-DREKYEDRSPIFYADNIKTPLLLIHGEEDDRVPIEQAEQLVDALKRKGKPVE 585 (620)
T ss_pred H---HhCCC--cc-------------c-ChHHHHhcChhhhhcccCCCEEEEeecCCccCChHHHHHHHHHHHHcCceEE
Confidence 0 00000 00 0 011233344455566679999999999999999998887776653 579
Q ss_pred EEEecCCCccccc-CCCchHHHHHHHHHHhh
Q 024134 242 VMAIKGADHMAML-SKPQPLSDCFSQIAHKY 271 (272)
Q Consensus 242 ~~~~~~~gH~~~~-~~p~~~~~~i~~fl~~~ 271 (272)
++++|+.+|.+.- ++-..+.+.+.+|++++
T Consensus 586 ~~~~p~e~H~~~~~~~~~~~~~~~~~~~~~~ 616 (620)
T COG1506 586 LVVFPDEGHGFSRPENRVKVLKEILDWFKRH 616 (620)
T ss_pred EEEeCCCCcCCCCchhHHHHHHHHHHHHHHH
Confidence 9999999999776 33455667777787764
No 79
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=99.80 E-value=3e-18 Score=123.81 Aligned_cols=107 Identities=14% Similarity=0.122 Sum_probs=76.0
Q ss_pred cCCCeEEEEecCCCcchhHH---hhHHHHHhCCCeEEEEcCCCCCCCCcccc-----cccchhhchHHHHHHHHHh----
Q 024134 14 KKQKHFVLVHGSNHGAWCWY---KVKPRLEAAGHRVTAMDLAASGINMKKIQ-----DVRSFYEYNEPLLEILASL---- 81 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~~~---~~~~~l~~~g~~v~~~d~~G~G~s~~~~~-----~~~~~~~~~~~~~~~i~~l---- 81 (272)
+..|+||++||.+++...+. .+...+.+.||.|+++|++|++.+..... ..........++.++++.+
T Consensus 11 ~~~P~vv~lHG~~~~~~~~~~~~~~~~~a~~~g~~Vv~Pd~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 90 (212)
T TIGR01840 11 GPRALVLALHGCGQTASAYVIDWGWKAAADRYGFVLVAPEQTSYNSSNNCWDWFFTHHRARGTGEVESLHQLIDAVKANY 90 (212)
T ss_pred CCCCEEEEeCCCCCCHHHHhhhcChHHHHHhCCeEEEecCCcCccccCCCCCCCCccccCCCCccHHHHHHHHHHHHHhc
Confidence 45789999999998887765 35555556799999999999875432110 0000112233444444444
Q ss_pred -cCCCcEEEEEeCcchHHHHHHHhhCccceeeeeeeeccC
Q 024134 82 -SADEKVILVGHSFGGLSVALAADKFPHKISVAIFLTAFM 120 (272)
Q Consensus 82 -~~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~ 120 (272)
.+.++++|+|||+||.+++.++.++|+.+.+++.+++..
T Consensus 91 ~id~~~i~l~G~S~Gg~~a~~~a~~~p~~~~~~~~~~g~~ 130 (212)
T TIGR01840 91 SIDPNRVYVTGLSAGGGMTAVLGCTYPDVFAGGASNAGLP 130 (212)
T ss_pred CcChhheEEEEECHHHHHHHHHHHhCchhheEEEeecCCc
Confidence 133689999999999999999999999999998888754
No 80
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=99.79 E-value=6.4e-18 Score=124.07 Aligned_cols=221 Identities=16% Similarity=0.130 Sum_probs=133.3
Q ss_pred CeEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcCCCcEEEEEeCcch
Q 024134 17 KHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSADEKVILVGHSFGG 96 (272)
Q Consensus 17 ~~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~lvG~S~Gg 96 (272)
++|+|+|+.+++...|..+++.|...++.|+.++.+|.+....+. .+++++++...+.|.......|++|+|||+||
T Consensus 1 ~~lf~~p~~gG~~~~y~~la~~l~~~~~~v~~i~~~~~~~~~~~~---~si~~la~~y~~~I~~~~~~gp~~L~G~S~Gg 77 (229)
T PF00975_consen 1 RPLFCFPPAGGSASSYRPLARALPDDVIGVYGIEYPGRGDDEPPP---DSIEELASRYAEAIRARQPEGPYVLAGWSFGG 77 (229)
T ss_dssp -EEEEESSTTCSGGGGHHHHHHHTTTEEEEEEECSTTSCTTSHEE---SSHHHHHHHHHHHHHHHTSSSSEEEEEETHHH
T ss_pred CeEEEEcCCccCHHHHHHHHHhCCCCeEEEEEEecCCCCCCCCCC---CCHHHHHHHHHHHhhhhCCCCCeeehccCccH
Confidence 479999999999999999999996434899999999998433322 59999999999988887344599999999999
Q ss_pred HHHHHHHhhC---ccceeeeeeeeccCCCCCCCchhhhhhcccCCchhhhhhhhhhccccCCCccchhhhhhhHHHHhhc
Q 024134 97 LSVALAADKF---PHKISVAIFLTAFMPDTKHQPSYVVERFSESIPREERLDTQYSIIDESNPSRMSILFGHKFLTLKLY 173 (272)
Q Consensus 97 ~~a~~~a~~~---p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (272)
.+|+++|.+. ...+..++++++..+............. ..... .+.... ..
T Consensus 78 ~lA~E~A~~Le~~G~~v~~l~liD~~~p~~~~~~~~~~~~~------~~~~~-~~~~~~-------------------~~ 131 (229)
T PF00975_consen 78 ILAFEMARQLEEAGEEVSRLILIDSPPPSIKERPRSREPSD------EQFIE-ELRRIG-------------------GT 131 (229)
T ss_dssp HHHHHHHHHHHHTT-SESEEEEESCSSTTCHSCHHHHHCHH------HHHHH-HHHHHC-------------------HH
T ss_pred HHHHHHHHHHHHhhhccCceEEecCCCCCcccchhhhhhhH------HHHHH-HHHHhc-------------------CC
Confidence 9999999764 3458999999976543311110000000 00000 000000 00
Q ss_pred cCCChhHHHHHHHhccCCccchHHhhhcccccccccCCceeEEEEeCCCCCccHH---HHHHHHhcCC-CceEEEecCCC
Q 024134 174 QLSPPEDLELAKMLVKPGLLFTDELSKANEFSNEGYGSVKRDFVGSDKDNCIPKE---FQQWMIQNNP-VNEVMAIKGAD 249 (272)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~---~~~~~~~~~~-~~~~~~~~~~g 249 (272)
.............+..........+.... ........+|.++.....|+..... ....+.+..+ ..+++.++ ++
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~v~-G~ 209 (229)
T PF00975_consen 132 PDASLEDEELLARLLRALRDDFQALENYS-IRPIDKQKVPITLFYALDDPLVSMDRLEEADRWWDYTSGDVEVHDVP-GD 209 (229)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHTCS--TTSSSESSEEEEEEECSSSSSSHHCGGHHCHHHGCBSSSEEEEEES-SE
T ss_pred chhhhcCHHHHHHHHHHHHHHHHHHhhcc-CCccccCCCcEEEEecCCCccccchhhhhHHHHHHhcCCCcEEEEEc-CC
Confidence 00000000011111111111111111111 0011111467889999999887765 3444666665 45788888 89
Q ss_pred cccccC-CCchHHHHHHHHH
Q 024134 250 HMAMLS-KPQPLSDCFSQIA 268 (272)
Q Consensus 250 H~~~~~-~p~~~~~~i~~fl 268 (272)
|+.++. +..++++.|.++|
T Consensus 210 H~~~l~~~~~~i~~~I~~~~ 229 (229)
T PF00975_consen 210 HFSMLKPHVAEIAEKIAEWL 229 (229)
T ss_dssp TTGHHSTTHHHHHHHHHHHH
T ss_pred CcEecchHHHHHHHHHhccC
Confidence 999987 5577888887765
No 81
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=99.78 E-value=1.2e-17 Score=121.31 Aligned_cols=179 Identities=16% Similarity=0.045 Sum_probs=113.7
Q ss_pred cCCCeEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCCCCCC-CCcc-ccccc--------chhhchHHHHHHHHHhc-
Q 024134 14 KKQKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGI-NMKK-IQDVR--------SFYEYNEPLLEILASLS- 82 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~-s~~~-~~~~~--------~~~~~~~~~~~~i~~l~- 82 (272)
++.|.||++|++.+-....+.+++.|+++||.|+++|+-+... .... ..... ..+...+++.+.++.+.
T Consensus 12 ~~~~~Vvv~~d~~G~~~~~~~~ad~lA~~Gy~v~~pD~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~ 91 (218)
T PF01738_consen 12 GPRPAVVVIHDIFGLNPNIRDLADRLAEEGYVVLAPDLFGGRGAPPSDPEEAFAAMRELFAPRPEQVAADLQAAVDYLRA 91 (218)
T ss_dssp SSEEEEEEE-BTTBS-HHHHHHHHHHHHTT-EEEEE-CCCCTS--CCCHHCHHHHHHHCHHHSHHHHHHHHHHHHHHHHC
T ss_pred CCCCEEEEEcCCCCCchHHHHHHHHHHhcCCCEEecccccCCCCCccchhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Confidence 4678999999998888888899999999999999999754433 1111 11000 12345667766677662
Q ss_pred ----CCCcEEEEEeCcchHHHHHHHhhCccceeeeeeeeccCCCCCCCchhhhhhcccCCchhhhhhhhhhccccCCCcc
Q 024134 83 ----ADEKVILVGHSFGGLSVALAADKFPHKISVAIFLTAFMPDTKHQPSYVVERFSESIPREERLDTQYSIIDESNPSR 158 (272)
Q Consensus 83 ----~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (272)
..+++.++|+|+||.+++.+|.+. +.+++.|..-|....
T Consensus 92 ~~~~~~~kig~vGfc~GG~~a~~~a~~~-~~~~a~v~~yg~~~~------------------------------------ 134 (218)
T PF01738_consen 92 QPEVDPGKIGVVGFCWGGKLALLLAARD-PRVDAAVSFYGGSPP------------------------------------ 134 (218)
T ss_dssp TTTCEEEEEEEEEETHHHHHHHHHHCCT-TTSSEEEEES-SSSG------------------------------------
T ss_pred ccccCCCcEEEEEEecchHHhhhhhhhc-cccceEEEEcCCCCC------------------------------------
Confidence 235899999999999999999877 578888766651000
Q ss_pred chhhhhhhHHHHhhccCCChhHHHHHHHhccCCccchHHhhhcccccccccCCceeEEEEeCCCCCccHHHHHHHHhcC-
Q 024134 159 MSILFGHKFLTLKLYQLSPPEDLELAKMLVKPGLLFTDELSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNN- 237 (272)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~- 237 (272)
.. .......+++|+++++|++|+.++.+..+.+.+.+
T Consensus 135 ------~~------------------------------------~~~~~~~~~~P~l~~~g~~D~~~~~~~~~~~~~~l~ 172 (218)
T PF01738_consen 135 ------PP------------------------------------PLEDAPKIKAPVLILFGENDPFFPPEEVEALEEALK 172 (218)
T ss_dssp ------GG------------------------------------HHHHGGG--S-EEEEEETT-TTS-HHHHHHHHHHHH
T ss_pred ------Cc------------------------------------chhhhcccCCCEeecCccCCCCCChHHHHHHHHHHH
Confidence 00 00001123899999999999999988766555444
Q ss_pred ---CCceEEEecCCCcccccCCCc--------hHHHHHHHHHHhh
Q 024134 238 ---PVNEVMAIKGADHMAMLSKPQ--------PLSDCFSQIAHKY 271 (272)
Q Consensus 238 ---~~~~~~~~~~~gH~~~~~~p~--------~~~~~i~~fl~~~ 271 (272)
...++++++|++|.+...... +-.+.+.+||+++
T Consensus 173 ~~~~~~~~~~y~ga~HgF~~~~~~~~~~~aa~~a~~~~~~ff~~~ 217 (218)
T PF01738_consen 173 AAGVDVEVHVYPGAGHGFANPSRPPYDPAAAEDAWQRTLAFFKRH 217 (218)
T ss_dssp CTTTTEEEEEETT--TTTTSTTSTT--HHHHHHHHHHHHHHHCC-
T ss_pred hcCCcEEEEECCCCcccccCCCCcccCHHHHHHHHHHHHHHHHhc
Confidence 578999999999988765433 2345567777654
No 82
>TIGR03230 lipo_lipase lipoprotein lipase. Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.
Probab=99.78 E-value=3e-18 Score=133.20 Aligned_cols=112 Identities=16% Similarity=0.178 Sum_probs=87.0
Q ss_pred hccCCCeEEEEecCCCcc--hhHHh-hHHHHHh--CCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhc----
Q 024134 12 EAKKQKHFVLVHGSNHGA--WCWYK-VKPRLEA--AGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLS---- 82 (272)
Q Consensus 12 ~~~~~~~vv~lhG~~~~~--~~~~~-~~~~l~~--~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~---- 82 (272)
-+.++|++|++||++.+. ..|.. +.+.|.. ..++|+++|++|+|.|..+... .....+++++.++++.+.
T Consensus 37 Fn~~~ptvIlIHG~~~s~~~~~w~~~l~~al~~~~~d~nVI~VDw~g~g~s~y~~a~-~~t~~vg~~la~lI~~L~~~~g 115 (442)
T TIGR03230 37 FNHETKTFIVIHGWTVTGMFESWVPKLVAALYEREPSANVIVVDWLSRAQQHYPTSA-AYTKLVGKDVAKFVNWMQEEFN 115 (442)
T ss_pred cCCCCCeEEEECCCCcCCcchhhHHHHHHHHHhccCCCEEEEEECCCcCCCCCcccc-ccHHHHHHHHHHHHHHHHHhhC
Confidence 346789999999998754 34654 5555542 2599999999999988765433 344666777777777651
Q ss_pred -CCCcEEEEEeCcchHHHHHHHhhCccceeeeeeeeccCCCCC
Q 024134 83 -ADEKVILVGHSFGGLSVALAADKFPHKISVAIFLTAFMPDTK 124 (272)
Q Consensus 83 -~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~ 124 (272)
+.++++||||||||.+|..++..+|++|.++++++|+.+...
T Consensus 116 l~l~~VhLIGHSLGAhIAg~ag~~~p~rV~rItgLDPAgP~F~ 158 (442)
T TIGR03230 116 YPWDNVHLLGYSLGAHVAGIAGSLTKHKVNRITGLDPAGPTFE 158 (442)
T ss_pred CCCCcEEEEEECHHHHHHHHHHHhCCcceeEEEEEcCCCCccc
Confidence 368999999999999999999999999999999999866543
No 83
>PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3. Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A.
Probab=99.77 E-value=1.6e-17 Score=120.33 Aligned_cols=241 Identities=11% Similarity=0.075 Sum_probs=130.4
Q ss_pred cCCCeEEEEecCCCcchh-HHhhH-----HHHHhCCCeEEEEcCCCCCCCCccc--c-cccchhhchHHHHHHHHHhcCC
Q 024134 14 KKQKHFVLVHGSNHGAWC-WYKVK-----PRLEAAGHRVTAMDLAASGINMKKI--Q-DVRSFYEYNEPLLEILASLSAD 84 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~-~~~~~-----~~l~~~g~~v~~~d~~G~G~s~~~~--~-~~~~~~~~~~~~~~~i~~l~~~ 84 (272)
+++|++|=.|-.|-+... |..+. ..+. +.+.++=+|.||+..-.... + ...+++++++++.++++++ +.
T Consensus 21 ~~kp~ilT~HDvGlNh~scF~~ff~~~~m~~i~-~~f~i~Hi~aPGqe~ga~~~p~~y~yPsmd~LAe~l~~Vl~~f-~l 98 (283)
T PF03096_consen 21 GNKPAILTYHDVGLNHKSCFQGFFNFEDMQEIL-QNFCIYHIDAPGQEEGAATLPEGYQYPSMDQLAEMLPEVLDHF-GL 98 (283)
T ss_dssp TTS-EEEEE--TT--HHHHCHHHHCSHHHHHHH-TTSEEEEEE-TTTSTT-----TT-----HHHHHCTHHHHHHHH-T-
T ss_pred CCCceEEEeccccccchHHHHHHhcchhHHHHh-hceEEEEEeCCCCCCCcccccccccccCHHHHHHHHHHHHHhC-Cc
Confidence 358999999999988766 55443 4454 45999999999998754332 2 2359999999999999999 99
Q ss_pred CcEEEEEeCcchHHHHHHHhhCccceeeeeeeeccCCCCCCCchhhhhhcccCCchhhhhhhhhhccccCCCccchhhhh
Q 024134 85 EKVILVGHSFGGLSVALAADKFPHKISVAIFLTAFMPDTKHQPSYVVERFSESIPREERLDTQYSIIDESNPSRMSILFG 164 (272)
Q Consensus 85 ~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (272)
+.++.+|--.||.+-..+|..+|++|.++||+++.....+... +...++.. ..+........ ....+.
T Consensus 99 k~vIg~GvGAGAnIL~rfAl~~p~~V~GLiLvn~~~~~~gw~E-w~~~K~~~---------~~L~~~gmt~~--~~d~Ll 166 (283)
T PF03096_consen 99 KSVIGFGVGAGANILARFALKHPERVLGLILVNPTCTAAGWME-WFYQKLSS---------WLLYSYGMTSS--VKDYLL 166 (283)
T ss_dssp --EEEEEETHHHHHHHHHHHHSGGGEEEEEEES---S---HHH-HHHHHHH----------------CTTS---HHHHHH
T ss_pred cEEEEEeeccchhhhhhccccCccceeEEEEEecCCCCccHHH-HHHHHHhc---------ccccccccccc--hHHhhh
Confidence 9999999999999999999999999999999998744332211 11111110 00000000000 011111
Q ss_pred hhHHHHhhccCCChhHHHHH-HHhccC-----CccchHHhhhcccc-cccccCCceeEEEEeCCCCCccHHHHHHHHhcC
Q 024134 165 HKFLTLKLYQLSPPEDLELA-KMLVKP-----GLLFTDELSKANEF-SNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNN 237 (272)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~ 237 (272)
...+....... ..+..... ..+.+. ...+.+.+..+..+ ...+...||+|++.|+..+... .+..+.+++
T Consensus 167 ~h~Fg~~~~~~-n~Dlv~~yr~~l~~~~Np~Nl~~f~~sy~~R~DL~~~~~~~~c~vLlvvG~~Sp~~~--~vv~~ns~L 243 (283)
T PF03096_consen 167 WHYFGKEEEEN-NSDLVQTYRQHLDERINPKNLALFLNSYNSRTDLSIERPSLGCPVLLVVGDNSPHVD--DVVEMNSKL 243 (283)
T ss_dssp HHHS-HHHHHC-T-HHHHHHHHHHHT-TTHHHHHHHHHHHHT-----SECTTCCS-EEEEEETTSTTHH--HHHHHHHHS
T ss_pred hcccccccccc-cHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccchhhcCCCCCCeEEEEecCCcchh--hHHHHHhhc
Confidence 11111111111 11111111 111111 11223333333322 2234447999999999987753 444566655
Q ss_pred C--CceEEEecCCCcccccCCCchHHHHHHHHHHhh
Q 024134 238 P--VNEVMAIKGADHMAMLSKPQPLSDCFSQIAHKY 271 (272)
Q Consensus 238 ~--~~~~~~~~~~gH~~~~~~p~~~~~~i~~fl~~~ 271 (272)
. +.++..++++|=.+..|+|+.+++.+.-|++..
T Consensus 244 dp~~ttllkv~dcGglV~eEqP~klaea~~lFlQG~ 279 (283)
T PF03096_consen 244 DPTKTTLLKVADCGGLVLEEQPGKLAEAFKLFLQGM 279 (283)
T ss_dssp -CCCEEEEEETT-TT-HHHH-HHHHHHHHHHHHHHT
T ss_pred CcccceEEEecccCCcccccCcHHHHHHHHHHHccC
Confidence 3 568999999999999999999999999999754
No 84
>KOG2931 consensus Differentiation-related gene 1 protein (NDR1 protein), related proteins [Function unknown]
Probab=99.75 E-value=4.3e-16 Score=111.46 Aligned_cols=241 Identities=11% Similarity=0.061 Sum_probs=148.6
Q ss_pred cCCCeEEEEecCCCcchh-HHhh-----HHHHHhCCCeEEEEcCCCCCCCCccc--c-cccchhhchHHHHHHHHHhcCC
Q 024134 14 KKQKHFVLVHGSNHGAWC-WYKV-----KPRLEAAGHRVTAMDLAASGINMKKI--Q-DVRSFYEYNEPLLEILASLSAD 84 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~-~~~~-----~~~l~~~g~~v~~~d~~G~G~s~~~~--~-~~~~~~~~~~~~~~~i~~l~~~ 84 (272)
+++|++|=.|.++.+... |..+ +..+.++ +.++-+|.|||-...... + ...+.+++++++..+++++ +.
T Consensus 44 ~~kpaiiTyhDlglN~~scFq~ff~~p~m~ei~~~-fcv~HV~~PGqe~gAp~~p~~y~yPsmd~LAd~l~~VL~~f-~l 121 (326)
T KOG2931|consen 44 GNKPAIITYHDLGLNHKSCFQGFFNFPDMAEILEH-FCVYHVDAPGQEDGAPSFPEGYPYPSMDDLADMLPEVLDHF-GL 121 (326)
T ss_pred CCCceEEEecccccchHhHhHHhhcCHhHHHHHhh-eEEEecCCCccccCCccCCCCCCCCCHHHHHHHHHHHHHhc-Cc
Confidence 458899999999988766 5443 3455556 999999999997654322 2 2358999999999999999 99
Q ss_pred CcEEEEEeCcchHHHHHHHhhCccceeeeeeeeccCCCCCCCchhhhhhcccCCc----hh-hhhhhhhhccccCCCccc
Q 024134 85 EKVILVGHSFGGLSVALAADKFPHKISVAIFLTAFMPDTKHQPSYVVERFSESIP----RE-ERLDTQYSIIDESNPSRM 159 (272)
Q Consensus 85 ~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~ 159 (272)
+.++-+|.-.|+.+...+|..||++|-++||+++.....+. ..+...++..... .. ...+..+....+......
T Consensus 122 k~vIg~GvGAGAyIL~rFAl~hp~rV~GLvLIn~~~~a~gw-iew~~~K~~s~~l~~~Gmt~~~~d~ll~H~Fg~e~~~~ 200 (326)
T KOG2931|consen 122 KSVIGMGVGAGAYILARFALNHPERVLGLVLINCDPCAKGW-IEWAYNKVSSNLLYYYGMTQGVKDYLLAHHFGKEELGN 200 (326)
T ss_pred ceEEEecccccHHHHHHHHhcChhheeEEEEEecCCCCchH-HHHHHHHHHHHHHHhhchhhhHHHHHHHHHhccccccc
Confidence 99999999999999999999999999999999986432221 1122222221100 00 001111111111010000
Q ss_pred hhhhhhhHHHHhhccCCChhHHHHHHHhccCCccchHHhhhcccccc-c----ccCCceeEEEEeCCCCCccHHHHHHHH
Q 024134 160 SILFGHKFLTLKLYQLSPPEDLELAKMLVKPGLLFTDELSKANEFSN-E----GYGSVKRDFVGSDKDNCIPKEFQQWMI 234 (272)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~P~l~i~g~~D~~~~~~~~~~~~ 234 (272)
...+..+ ++..+.+......... +++.+....++.. . ...+||+|++.|++.+.+ +....+.
T Consensus 201 ~~diVq~-Yr~~l~~~~N~~Nl~~----------fl~ayn~R~DL~~~r~~~~~tlkc~vllvvGd~Sp~~--~~vv~~n 267 (326)
T KOG2931|consen 201 NSDIVQE-YRQHLGERLNPKNLAL----------FLNAYNGRRDLSIERPKLGTTLKCPVLLVVGDNSPHV--SAVVECN 267 (326)
T ss_pred cHHHHHH-HHHHHHhcCChhHHHH----------HHHHhcCCCCccccCCCcCccccccEEEEecCCCchh--hhhhhhh
Confidence 0001011 1111111112111111 1222222222211 1 133699999999998765 3444555
Q ss_pred hcCC--CceEEEecCCCcccccCCCchHHHHHHHHHHh
Q 024134 235 QNNP--VNEVMAIKGADHMAMLSKPQPLSDCFSQIAHK 270 (272)
Q Consensus 235 ~~~~--~~~~~~~~~~gH~~~~~~p~~~~~~i~~fl~~ 270 (272)
..+. +..+..+.++|-.+..++|..+++.+.-|++-
T Consensus 268 ~~Ldp~~ttllk~~d~g~l~~e~qP~kl~ea~~~FlqG 305 (326)
T KOG2931|consen 268 SKLDPTYTTLLKMADCGGLVQEEQPGKLAEAFKYFLQG 305 (326)
T ss_pred cccCcccceEEEEcccCCcccccCchHHHHHHHHHHcc
Confidence 5552 57889999999999999999999999999864
No 85
>PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic. The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A.
Probab=99.75 E-value=3.3e-17 Score=112.74 Aligned_cols=156 Identities=24% Similarity=0.298 Sum_probs=101.1
Q ss_pred EEEEecCCCcchh-HHhh-HHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcCCCcEEEEEeCcch
Q 024134 19 FVLVHGSNHGAWC-WYKV-KPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSADEKVILVGHSFGG 96 (272)
Q Consensus 19 vv~lhG~~~~~~~-~~~~-~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~lvG~S~Gg 96 (272)
|+++||++++... |... .+.|... ++|..+++ ...+.+++.+.+.+.+..+ .+++++||||+|+
T Consensus 1 v~IvhG~~~s~~~HW~~wl~~~l~~~-~~V~~~~~-----------~~P~~~~W~~~l~~~i~~~--~~~~ilVaHSLGc 66 (171)
T PF06821_consen 1 VLIVHGYGGSPPDHWQPWLERQLENS-VRVEQPDW-----------DNPDLDEWVQALDQAIDAI--DEPTILVAHSLGC 66 (171)
T ss_dssp EEEE--TTSSTTTSTHHHHHHHHTTS-EEEEEC-------------TS--HHHHHHHHHHCCHC---TTTEEEEEETHHH
T ss_pred CEEeCCCCCCCccHHHHHHHHhCCCC-eEEecccc-----------CCCCHHHHHHHHHHHHhhc--CCCeEEEEeCHHH
Confidence 6899999888644 6554 4556444 67776665 1137778888888877765 3679999999999
Q ss_pred HHHHHHH-hhCccceeeeeeeeccCCCCCCCchhhhhhcccCCchhhhhhhhhhccccCCCccchhhhhhhHHHHhhccC
Q 024134 97 LSVALAA-DKFPHKISVAIFLTAFMPDTKHQPSYVVERFSESIPREERLDTQYSIIDESNPSRMSILFGHKFLTLKLYQL 175 (272)
Q Consensus 97 ~~a~~~a-~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (272)
..++.++ .....+|++++|++|+........ ...+ ..
T Consensus 67 ~~~l~~l~~~~~~~v~g~lLVAp~~~~~~~~~---~~~~--------------~~------------------------- 104 (171)
T PF06821_consen 67 LTALRWLAEQSQKKVAGALLVAPFDPDDPEPF---PPEL--------------DG------------------------- 104 (171)
T ss_dssp HHHHHHHHHTCCSSEEEEEEES--SCGCHHCC---TCGG--------------CC-------------------------
T ss_pred HHHHHHHhhcccccccEEEEEcCCCcccccch---hhhc--------------cc-------------------------
Confidence 9999999 778889999999999743200000 0000 00
Q ss_pred CChhHHHHHHHhccCCccchHHhhhcccccccccCCceeEEEEeCCCCCccHHHHHHHHhcCCCceEEEecCCCcccccC
Q 024134 176 SPPEDLELAKMLVKPGLLFTDELSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNNPVNEVMAIKGADHMAMLS 255 (272)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~ 255 (272)
..... .....+|.++|.+++|+++|.+.++.+++.+ +++++.++++||+.--+
T Consensus 105 -------------------------f~~~p-~~~l~~~~~viaS~nDp~vp~~~a~~~A~~l-~a~~~~~~~~GHf~~~~ 157 (171)
T PF06821_consen 105 -------------------------FTPLP-RDPLPFPSIVIASDNDPYVPFERAQRLAQRL-GAELIILGGGGHFNAAS 157 (171)
T ss_dssp -------------------------CTTSH-CCHHHCCEEEEEETTBSSS-HHHHHHHHHHH-T-EEEEETS-TTSSGGG
T ss_pred -------------------------cccCc-ccccCCCeEEEEcCCCCccCHHHHHHHHHHc-CCCeEECCCCCCccccc
Confidence 00000 0001567799999999999999999999998 89999999999997655
Q ss_pred CC
Q 024134 256 KP 257 (272)
Q Consensus 256 ~p 257 (272)
.-
T Consensus 158 G~ 159 (171)
T PF06821_consen 158 GF 159 (171)
T ss_dssp TH
T ss_pred CC
Confidence 43
No 86
>PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function.
Probab=99.75 E-value=3.8e-16 Score=115.76 Aligned_cols=113 Identities=17% Similarity=0.264 Sum_probs=96.8
Q ss_pred CCeEEEEecCCCcchhHHhhHHHHHhC---CCeEEEEcCCCCCCCCcc-----cccccchhhchHHHHHHHHHh-c----
Q 024134 16 QKHFVLVHGSNHGAWCWYKVKPRLEAA---GHRVTAMDLAASGINMKK-----IQDVRSFYEYNEPLLEILASL-S---- 82 (272)
Q Consensus 16 ~~~vv~lhG~~~~~~~~~~~~~~l~~~---g~~v~~~d~~G~G~s~~~-----~~~~~~~~~~~~~~~~~i~~l-~---- 82 (272)
+..++||+|.+|-...|..++..|.++ .+.|+++.+.||..++.. ....++++++++...++++++ .
T Consensus 2 ~~li~~IPGNPGlv~fY~~Fl~~L~~~l~~~~~i~~ish~Gh~~~~~~~~~~~~~~~~sL~~QI~hk~~~i~~~~~~~~~ 81 (266)
T PF10230_consen 2 RPLIVFIPGNPGLVEFYEEFLSALYEKLNPQFEILGISHAGHSTSPSNSKFSPNGRLFSLQDQIEHKIDFIKELIPQKNK 81 (266)
T ss_pred cEEEEEECCCCChHHHHHHHHHHHHHhCCCCCeeEEecCCCCcCCcccccccCCCCccCHHHHHHHHHHHHHHHhhhhcC
Confidence 467999999999999999999998744 699999999999887765 345689999999999999887 2
Q ss_pred CCCcEEEEEeCcchHHHHHHHhhCc---cceeeeeeeeccCCCCCCCch
Q 024134 83 ADEKVILVGHSFGGLSVALAADKFP---HKISVAIFLTAFMPDTKHQPS 128 (272)
Q Consensus 83 ~~~~~~lvG~S~Gg~~a~~~a~~~p---~~v~~lvl~~~~~~~~~~~~~ 128 (272)
...+++++|||.|+.++++++.+.+ .+|.+++++-|+......++.
T Consensus 82 ~~~~liLiGHSIGayi~levl~r~~~~~~~V~~~~lLfPTi~~ia~Sp~ 130 (266)
T PF10230_consen 82 PNVKLILIGHSIGAYIALEVLKRLPDLKFRVKKVILLFPTIEDIAKSPN 130 (266)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHhccccCCceeEEEEeCCccccccCCch
Confidence 5678999999999999999999999 789999999998765555443
No 87
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=99.75 E-value=3.3e-17 Score=124.98 Aligned_cols=217 Identities=16% Similarity=0.150 Sum_probs=118.3
Q ss_pred cCCCeEEEEecCCCcchhH-HhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhc--CCCcEEEE
Q 024134 14 KKQKHFVLVHGSNHGAWCW-YKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLS--ADEKVILV 90 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~~-~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~--~~~~~~lv 90 (272)
+..|+||++.|+-+-...+ ..+.+.|+++|+.++++|.||.|.|....-. .+.+.+-..+.+.+.... +..+|.++
T Consensus 188 ~p~P~VIv~gGlDs~qeD~~~l~~~~l~~rGiA~LtvDmPG~G~s~~~~l~-~D~~~l~~aVLd~L~~~p~VD~~RV~~~ 266 (411)
T PF06500_consen 188 KPYPTVIVCGGLDSLQEDLYRLFRDYLAPRGIAMLTVDMPGQGESPKWPLT-QDSSRLHQAVLDYLASRPWVDHTRVGAW 266 (411)
T ss_dssp S-EEEEEEE--TTS-GGGGHHHHHCCCHHCT-EEEEE--TTSGGGTTT-S--S-CCHHHHHHHHHHHHSTTEEEEEEEEE
T ss_pred CCCCEEEEeCCcchhHHHHHHHHHHHHHhCCCEEEEEccCCCcccccCCCC-cCHHHHHHHHHHHHhcCCccChhheEEE
Confidence 4457788888877777564 4555778899999999999999998643322 234455566666666652 44689999
Q ss_pred EeCcchHHHHHHHhhCccceeeeeeeeccCCCCCCCchhhhhhcccCCchhhhhhhhhhccccCCCccchhhhhhhHHHH
Q 024134 91 GHSFGGLSVALAADKFPHKISVAIFLTAFMPDTKHQPSYVVERFSESIPREERLDTQYSIIDESNPSRMSILFGHKFLTL 170 (272)
Q Consensus 91 G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (272)
|.|+||.+|..+|..+++|++++|..++++....... ......+ . .+ ...+..
T Consensus 267 G~SfGGy~AvRlA~le~~RlkavV~~Ga~vh~~ft~~-----~~~~~~P-~--------------------my-~d~LA~ 319 (411)
T PF06500_consen 267 GFSFGGYYAVRLAALEDPRLKAVVALGAPVHHFFTDP-----EWQQRVP-D--------------------MY-LDVLAS 319 (411)
T ss_dssp EETHHHHHHHHHHHHTTTT-SEEEEES---SCGGH-H-----HHHTTS--H--------------------HH-HHHHHH
T ss_pred EeccchHHHHHHHHhcccceeeEeeeCchHhhhhccH-----HHHhcCC-H--------------------HH-HHHHHH
Confidence 9999999999999999999999999998743221110 0000000 0 00 011111
Q ss_pred hhccCCChhHHHHHHHhccCCccchHHhhhcccccccccCCceeEEEEeCCCCCccHHHHHHHHhcCCCceEEEecCCC-
Q 024134 171 KLYQLSPPEDLELAKMLVKPGLLFTDELSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNNPVNEVMAIKGAD- 249 (272)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~g- 249 (272)
.+... ..+...+...+ ...... ...+...++..+|+|.+.|++|+++|.+..+-++..-.+.+...++...
T Consensus 320 rlG~~-~~~~~~l~~el-~~~SLk------~qGlL~~rr~~~plL~i~~~~D~v~P~eD~~lia~~s~~gk~~~~~~~~~ 391 (411)
T PF06500_consen 320 RLGMA-AVSDESLRGEL-NKFSLK------TQGLLSGRRCPTPLLAINGEDDPVSPIEDSRLIAESSTDGKALRIPSKPL 391 (411)
T ss_dssp HCT-S-CE-HHHHHHHG-GGGSTT------TTTTTTSS-BSS-EEEEEETT-SSS-HHHHHHHHHTBTT-EEEEE-SSSH
T ss_pred HhCCc-cCCHHHHHHHH-HhcCcc------hhccccCCCCCcceEEeecCCCCCCCHHHHHHHHhcCCCCceeecCCCcc
Confidence 11100 11111111111 111000 0001112344889999999999999999999988887778888888554
Q ss_pred cccccCCCchHHHHHHHHHHh
Q 024134 250 HMAMLSKPQPLSDCFSQIAHK 270 (272)
Q Consensus 250 H~~~~~~p~~~~~~i~~fl~~ 270 (272)
|..+. .-...+.+||++
T Consensus 392 ~~gy~----~al~~~~~Wl~~ 408 (411)
T PF06500_consen 392 HMGYP----QALDEIYKWLED 408 (411)
T ss_dssp HHHHH----HHHHHHHHHHHH
T ss_pred ccchH----HHHHHHHHHHHH
Confidence 44332 455667777764
No 88
>TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some
Probab=99.75 E-value=1.4e-16 Score=122.74 Aligned_cols=246 Identities=11% Similarity=0.069 Sum_probs=146.3
Q ss_pred CCeEEEEecCCCcchhH-HhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcCCCcEEEEEeCc
Q 024134 16 QKHFVLVHGSNHGAWCW-YKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSADEKVILVGHSF 94 (272)
Q Consensus 16 ~~~vv~lhG~~~~~~~~-~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~lvG~S~ 94 (272)
.|+||++..+.+....+ +.+++.|.+ |+.|+..|+..-+..+..... .+++|+++-+.++++++ +.+ ++++|+|+
T Consensus 102 ~~pvLiV~Pl~g~~~~L~RS~V~~Ll~-g~dVYl~DW~~p~~vp~~~~~-f~ldDYi~~l~~~i~~~-G~~-v~l~GvCq 177 (406)
T TIGR01849 102 GPAVLIVAPMSGHYATLLRSTVEALLP-DHDVYITDWVNARMVPLSAGK-FDLEDYIDYLIEFIRFL-GPD-IHVIAVCQ 177 (406)
T ss_pred CCcEEEEcCCchHHHHHHHHHHHHHhC-CCcEEEEeCCCCCCCchhcCC-CCHHHHHHHHHHHHHHh-CCC-CcEEEEch
Confidence 37999999887655543 678899987 999999999877755433333 79999999999999998 655 99999999
Q ss_pred chHHHHHHHhhC-----ccceeeeeeeeccCCCCCCCchhhhhhcccCCchhhhh------------------------h
Q 024134 95 GGLSVALAADKF-----PHKISVAIFLTAFMPDTKHQPSYVVERFSESIPREERL------------------------D 145 (272)
Q Consensus 95 Gg~~a~~~a~~~-----p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~ 145 (272)
||..++.+++.. |.+++++++++++......+ .....+........+. .
T Consensus 178 gG~~~laa~Al~a~~~~p~~~~sltlm~~PID~~~~p--~~v~~~a~~~~i~~~~~~~i~~vp~~~~g~gr~v~PG~~~~ 255 (406)
T TIGR01849 178 PAVPVLAAVALMAENEPPAQPRSMTLMGGPIDARASP--TVVNELAREKPIEWFQHNVIMRVPFPYPGAGRLVYPGFLQL 255 (406)
T ss_pred hhHHHHHHHHHHHhcCCCCCcceEEEEecCccCCCCC--chHHHHhhcccHHHHHHHhhhccCccccCCCCcccCHHHHH
Confidence 999877666554 66799999999876544321 1112221111101111 1
Q ss_pred hhhhccccCCCccchhhhhhhHHHHhhccCC-ChhHHH-HHH------------------HhccCCccchHHhhhccccc
Q 024134 146 TQYSIIDESNPSRMSILFGHKFLTLKLYQLS-PPEDLE-LAK------------------MLVKPGLLFTDELSKANEFS 205 (272)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~------------------~~~~~~~~~~~~~~~~~~~~ 205 (272)
..|... .+.. ....-.+++........ ...+.. ... .++.........+.-.....
T Consensus 256 ~~F~~m-np~r---~~~~~~~~~~~l~~gd~~~~~~~~~f~~~y~d~~dlpge~y~~~v~~vf~~n~L~~G~l~v~G~~V 331 (406)
T TIGR01849 256 AGFISM-NLDR---HTKAHSDFFLHLVKGDGQEADKHRIFYDEYLAVMDMTAEFYLQTIDVVFQQFLLPQGKFIVEGKRV 331 (406)
T ss_pred HHHHHc-Ccch---HHHHHHHHHHHHhcCCcchHHHHHHHHHHhhhccCCcHHHHHHHHHHHHHhCCccCCcEEECCEEe
Confidence 111000 0000 00000011111110010 000111 111 11111111111111111223
Q ss_pred ccccCC-ceeEEEEeCCCCCccHHHHHHHHhcC---C--CceEEEecCCCcccccCC---CchHHHHHHHHHHhh
Q 024134 206 NEGYGS-VKRDFVGSDKDNCIPKEFQQWMIQNN---P--VNEVMAIKGADHMAMLSK---PQPLSDCFSQIAHKY 271 (272)
Q Consensus 206 ~~~~~~-~P~l~i~g~~D~~~~~~~~~~~~~~~---~--~~~~~~~~~~gH~~~~~~---p~~~~~~i~~fl~~~ 271 (272)
++..|+ +|++.+.|++|.++|+...+.+.+.+ + +.+.+..+++||...+-- .+++.-.|.+||.++
T Consensus 332 dl~~I~~~pll~V~ge~D~I~p~~qt~aa~~l~~~~~s~~k~~~~~~~~GH~Gvf~G~r~~~~i~P~i~~wl~~~ 406 (406)
T TIGR01849 332 DPGAITRVALLTVEGENDDISGLGQTKAALRLCTGIPEDMKRHHLQPGVGHYGVFSGSRFREEIYPLVREFIRRN 406 (406)
T ss_pred cHHHCcccceEEEeccCCCcCCHHHhHHHHHHhhcCChhhceEeecCCCCeEEEeeChhhhhhhchHHHHHHHhC
Confidence 356778 99999999999999999998888864 4 345677778999987743 377889999999763
No 89
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=99.74 E-value=2e-16 Score=125.40 Aligned_cols=235 Identities=11% Similarity=0.086 Sum_probs=137.0
Q ss_pred cCCCeEEEEecCCCcchhH-----HhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHh---cCCC
Q 024134 14 KKQKHFVLVHGSNHGAWCW-----YKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASL---SADE 85 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~~-----~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l---~~~~ 85 (272)
..++|||++|.+-.....+ +.+++.|.++|+.|+++|+++-+.+. ...+++++++.+.+.++.+ .+.+
T Consensus 213 v~~~PLLIVPp~INK~YIlDL~P~~SlVr~lv~qG~~VflIsW~nP~~~~----r~~~ldDYv~~i~~Ald~V~~~tG~~ 288 (560)
T TIGR01839 213 QHARPLLVVPPQINKFYIFDLSPEKSFVQYCLKNQLQVFIISWRNPDKAH----REWGLSTYVDALKEAVDAVRAITGSR 288 (560)
T ss_pred cCCCcEEEechhhhhhheeecCCcchHHHHHHHcCCeEEEEeCCCCChhh----cCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 3457999999998666666 57999999999999999999866553 2368888888777777766 4678
Q ss_pred cEEEEEeCcchHHHHH----HHhhCcc-ceeeeeeeeccCCCCCCCchhhh---------hhccc--CCchhhhhhhhhh
Q 024134 86 KVILVGHSFGGLSVAL----AADKFPH-KISVAIFLTAFMPDTKHQPSYVV---------ERFSE--SIPREERLDTQYS 149 (272)
Q Consensus 86 ~~~lvG~S~Gg~~a~~----~a~~~p~-~v~~lvl~~~~~~~~~~~~~~~~---------~~~~~--~~~~~~~~~~~~~ 149 (272)
++.++|+|+||.++.. +++++++ +|++++++.+............. +.... .......+...|.
T Consensus 289 ~vnl~GyC~GGtl~a~~~a~~aA~~~~~~V~sltllatplDf~~~g~l~~f~~e~~~~~~e~~~~~~G~lpg~~ma~~F~ 368 (560)
T TIGR01839 289 DLNLLGACAGGLTCAALVGHLQALGQLRKVNSLTYLVSLLDSTMESPAALFADEQTLEAAKRRSYQAGVLDGSEMAKVFA 368 (560)
T ss_pred CeeEEEECcchHHHHHHHHHHHhcCCCCceeeEEeeecccccCCCCcchhccChHHHHHHHHHHHhcCCcCHHHHHHHHH
Confidence 9999999999999886 7888886 89999999887654322211000 00000 0011112222222
Q ss_pred ccccCCCccchhhhhhhHH-------H--HhhccCCChhH---HHHHHHhccCCccch-HHhhhcccccccccCCceeEE
Q 024134 150 IIDESNPSRMSILFGHKFL-------T--LKLYQLSPPED---LELAKMLVKPGLLFT-DELSKANEFSNEGYGSVKRDF 216 (272)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~-------~--~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~P~l~ 216 (272)
....... ...++...++ . ..+......-. ......++..+.... ..+.-.....++..|+||+++
T Consensus 369 ~LrP~dl--iw~y~v~~yllg~~p~~fdll~Wn~D~t~lPg~~~~e~l~ly~~N~L~~pG~l~v~G~~idL~~I~~Pvl~ 446 (560)
T TIGR01839 369 WMRPNDL--IWNYWVNNYLLGNEPPAFDILYWNNDTTRLPAAFHGDLLDMFKSNPLTRPDALEVCGTPIDLKKVKCDSFS 446 (560)
T ss_pred hcCchhh--hHHHHHHHhhcCCCcchhhHHHHhCcCccchHHHHHHHHHHHhcCCCCCCCCEEECCEEechhcCCCCeEE
Confidence 1110000 0000000000 0 00000000000 000111111111111 111112223346788999999
Q ss_pred EEeCCCCCccHHHHHHHHhcCC-CceEEEecCCCcccccC
Q 024134 217 VGSDKDNCIPKEFQQWMIQNNP-VNEVMAIKGADHMAMLS 255 (272)
Q Consensus 217 i~g~~D~~~~~~~~~~~~~~~~-~~~~~~~~~~gH~~~~~ 255 (272)
+.|+.|.++|++.+..+.+.+. +.+++..+ +||..-.=
T Consensus 447 va~~~DHIvPw~s~~~~~~l~gs~~~fvl~~-gGHIggiv 485 (560)
T TIGR01839 447 VAGTNDHITPWDAVYRSALLLGGKRRFVLSN-SGHIQSIL 485 (560)
T ss_pred EecCcCCcCCHHHHHHHHHHcCCCeEEEecC-CCcccccc
Confidence 9999999999999999988876 45666665 89975443
No 90
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=99.74 E-value=1.8e-16 Score=106.45 Aligned_cols=174 Identities=17% Similarity=0.116 Sum_probs=120.9
Q ss_pred cCCCeEEEEecCC-----CcchhHHhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcCCCcE-
Q 024134 14 KKQKHFVLVHGSN-----HGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSADEKV- 87 (272)
Q Consensus 14 ~~~~~vv~lhG~~-----~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~- 87 (272)
.+.|..|++|.-+ .+...-..++..|.++||.++.+|+||-|.|.+..+....-.+-+....++++......+.
T Consensus 26 ~~~~iAli~HPHPl~gGtm~nkvv~~la~~l~~~G~atlRfNfRgVG~S~G~fD~GiGE~~Da~aaldW~~~~hp~s~~~ 105 (210)
T COG2945 26 PAAPIALICHPHPLFGGTMNNKVVQTLARALVKRGFATLRFNFRGVGRSQGEFDNGIGELEDAAAALDWLQARHPDSASC 105 (210)
T ss_pred CCCceEEecCCCccccCccCCHHHHHHHHHHHhCCceEEeecccccccccCcccCCcchHHHHHHHHHHHHhhCCCchhh
Confidence 4567778888643 2233456778889999999999999999999887664332223334445555555233343
Q ss_pred EEEEeCcchHHHHHHHhhCccceeeeeeeeccCCCCCCCchhhhhhcccCCchhhhhhhhhhccccCCCccchhhhhhhH
Q 024134 88 ILVGHSFGGLSVALAADKFPHKISVAIFLTAFMPDTKHQPSYVVERFSESIPREERLDTQYSIIDESNPSRMSILFGHKF 167 (272)
Q Consensus 88 ~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (272)
.+.|+|+|+.+++.+|.+.|+ ....+.+.|... .. .+
T Consensus 106 ~l~GfSFGa~Ia~~la~r~~e-~~~~is~~p~~~--~~-------df--------------------------------- 142 (210)
T COG2945 106 WLAGFSFGAYIAMQLAMRRPE-ILVFISILPPIN--AY-------DF--------------------------------- 142 (210)
T ss_pred hhcccchHHHHHHHHHHhccc-ccceeeccCCCC--ch-------hh---------------------------------
Confidence 688999999999999998876 334443443311 00 00
Q ss_pred HHHhhccCCChhHHHHHHHhccCCccchHHhhhcccccccccCCceeEEEEeCCCCCccHHHHHHHHhcCCCceEEEecC
Q 024134 168 LTLKLYQLSPPEDLELAKMLVKPGLLFTDELSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNNPVNEVMAIKG 247 (272)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (272)
.. .....+|.++|+|+.|.+++.....++.+. ...+++.+++
T Consensus 143 ------------------s~-------------------l~P~P~~~lvi~g~~Ddvv~l~~~l~~~~~-~~~~~i~i~~ 184 (210)
T COG2945 143 ------------------SF-------------------LAPCPSPGLVIQGDADDVVDLVAVLKWQES-IKITVITIPG 184 (210)
T ss_pred ------------------hh-------------------ccCCCCCceeEecChhhhhcHHHHHHhhcC-CCCceEEecC
Confidence 00 000167899999999999998888888776 4678999999
Q ss_pred CCcccccCCCchHHHHHHHHHH
Q 024134 248 ADHMAMLSKPQPLSDCFSQIAH 269 (272)
Q Consensus 248 ~gH~~~~~~p~~~~~~i~~fl~ 269 (272)
++||++-. -..+.+.|.+|+.
T Consensus 185 a~HFF~gK-l~~l~~~i~~~l~ 205 (210)
T COG2945 185 ADHFFHGK-LIELRDTIADFLE 205 (210)
T ss_pred CCceeccc-HHHHHHHHHHHhh
Confidence 99998654 5678889998884
No 91
>cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=99.73 E-value=1.9e-17 Score=123.44 Aligned_cols=110 Identities=18% Similarity=0.203 Sum_probs=82.8
Q ss_pred cCCCeEEEEecCCCcc-hhHHh-hHHHH-HhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhc-----CCC
Q 024134 14 KKQKHFVLVHGSNHGA-WCWYK-VKPRL-EAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLS-----ADE 85 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~-~~~~~-~~~~l-~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~-----~~~ 85 (272)
.++|++|++||++++. ..|.. +.+.+ ...+++|+++|+++++.+..+. ...+....++++.++++.+. +.+
T Consensus 34 ~~~p~vilIHG~~~~~~~~~~~~l~~~ll~~~~~nVi~vD~~~~~~~~y~~-a~~~~~~v~~~la~~l~~L~~~~g~~~~ 112 (275)
T cd00707 34 PSRPTRFIIHGWTSSGEESWISDLRKAYLSRGDYNVIVVDWGRGANPNYPQ-AVNNTRVVGAELAKFLDFLVDNTGLSLE 112 (275)
T ss_pred CCCCcEEEEcCCCCCCCCcHHHHHHHHHHhcCCCEEEEEECccccccChHH-HHHhHHHHHHHHHHHHHHHHHhcCCChH
Confidence 5689999999999887 56654 44444 4457999999999984433222 22355556666666666651 457
Q ss_pred cEEEEEeCcchHHHHHHHhhCccceeeeeeeeccCCCCC
Q 024134 86 KVILVGHSFGGLSVALAADKFPHKISVAIFLTAFMPDTK 124 (272)
Q Consensus 86 ~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~ 124 (272)
++++|||||||.+|..++.++|++|+++++++|..+...
T Consensus 113 ~i~lIGhSlGa~vAg~~a~~~~~~v~~iv~LDPa~p~f~ 151 (275)
T cd00707 113 NVHLIGHSLGAHVAGFAGKRLNGKLGRITGLDPAGPLFS 151 (275)
T ss_pred HEEEEEecHHHHHHHHHHHHhcCccceeEEecCCccccc
Confidence 899999999999999999999999999999999866543
No 92
>PRK10162 acetyl esterase; Provisional
Probab=99.73 E-value=1.4e-15 Score=116.45 Aligned_cols=106 Identities=12% Similarity=0.089 Sum_probs=72.5
Q ss_pred CCCeEEEEecCC---CcchhHHhhHHHHHh-CCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhc-CCCcEEE
Q 024134 15 KQKHFVLVHGSN---HGAWCWYKVKPRLEA-AGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLS-ADEKVIL 89 (272)
Q Consensus 15 ~~~~vv~lhG~~---~~~~~~~~~~~~l~~-~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~-~~~~~~l 89 (272)
..|+||++||.+ ++...|..++..|++ .|+.|+++|+|.......+.. ..+..+.++.+.+..+.++ +.+++++
T Consensus 80 ~~p~vv~~HGGg~~~g~~~~~~~~~~~la~~~g~~Vv~vdYrlape~~~p~~-~~D~~~a~~~l~~~~~~~~~d~~~i~l 158 (318)
T PRK10162 80 SQATLFYLHGGGFILGNLDTHDRIMRLLASYSGCTVIGIDYTLSPEARFPQA-IEEIVAVCCYFHQHAEDYGINMSRIGF 158 (318)
T ss_pred CCCEEEEEeCCcccCCCchhhhHHHHHHHHHcCCEEEEecCCCCCCCCCCCc-HHHHHHHHHHHHHhHHHhCCChhHEEE
Confidence 458899999977 566678888888886 489999999996554322111 1122222233333333341 3468999
Q ss_pred EEeCcchHHHHHHHhhC------ccceeeeeeeeccCC
Q 024134 90 VGHSFGGLSVALAADKF------PHKISVAIFLTAFMP 121 (272)
Q Consensus 90 vG~S~Gg~~a~~~a~~~------p~~v~~lvl~~~~~~ 121 (272)
+|+|+||.+++.++... +.++.++|++.|...
T Consensus 159 ~G~SaGG~la~~~a~~~~~~~~~~~~~~~~vl~~p~~~ 196 (318)
T PRK10162 159 AGDSAGAMLALASALWLRDKQIDCGKVAGVLLWYGLYG 196 (318)
T ss_pred EEECHHHHHHHHHHHHHHhcCCCccChhheEEECCccC
Confidence 99999999999998753 357889999988644
No 93
>PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F ....
Probab=99.72 E-value=1.1e-15 Score=115.75 Aligned_cols=212 Identities=17% Similarity=0.100 Sum_probs=116.5
Q ss_pred cCCCeEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCCCCCCCCcccc-------------cccc------hhhchHHH
Q 024134 14 KKQKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQ-------------DVRS------FYEYNEPL 74 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~-------------~~~~------~~~~~~~~ 74 (272)
++-|.||.+||.++....|..... ++..||.|+.+|.||+|....... ...+ +..+..|.
T Consensus 81 ~~~Pavv~~hGyg~~~~~~~~~~~-~a~~G~~vl~~d~rGqg~~~~d~~~~~~~~~~g~~~~g~~~~~e~~yyr~~~~D~ 159 (320)
T PF05448_consen 81 GKLPAVVQFHGYGGRSGDPFDLLP-WAAAGYAVLAMDVRGQGGRSPDYRGSSGGTLKGHITRGIDDNPEDYYYRRVYLDA 159 (320)
T ss_dssp SSEEEEEEE--TT--GGGHHHHHH-HHHTT-EEEEE--TTTSSSS-B-SSBSSS-SSSSTTTTTTS-TTT-HHHHHHHHH
T ss_pred CCcCEEEEecCCCCCCCCcccccc-cccCCeEEEEecCCCCCCCCCCccccCCCCCccHHhcCccCchHHHHHHHHHHHH
Confidence 455789999999999877766544 567899999999999993221110 0011 12233455
Q ss_pred HHHHHHh---c--CCCcEEEEEeCcchHHHHHHHhhCccceeeeeeeeccCCCCCCCchhhhhhcccCCchhhhhhhhhh
Q 024134 75 LEILASL---S--ADEKVILVGHSFGGLSVALAADKFPHKISVAIFLTAFMPDTKHQPSYVVERFSESIPREERLDTQYS 149 (272)
Q Consensus 75 ~~~i~~l---~--~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (272)
...++.+ . +.+++.+.|.|+||.+++.+|+..| +|++++...|+...... ....-.... .
T Consensus 160 ~ravd~l~slpevD~~rI~v~G~SqGG~lal~~aaLd~-rv~~~~~~vP~l~d~~~----~~~~~~~~~---~------- 224 (320)
T PF05448_consen 160 VRAVDFLRSLPEVDGKRIGVTGGSQGGGLALAAAALDP-RVKAAAADVPFLCDFRR----ALELRADEG---P------- 224 (320)
T ss_dssp HHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHSS-T-SEEEEESESSSSHHH----HHHHT--ST---T-------
T ss_pred HHHHHHHHhCCCcCcceEEEEeecCchHHHHHHHHhCc-cccEEEecCCCccchhh----hhhcCCccc---c-------
Confidence 5555544 1 3468999999999999999999876 59999988876432100 000000000 0
Q ss_pred ccccCCCccchhhhhhhHHHHhhc--cCCChhHHHHHHHhccCCccchHHhhhcccccccccCCceeEEEEeCCCCCccH
Q 024134 150 IIDESNPSRMSILFGHKFLTLKLY--QLSPPEDLELAKMLVKPGLLFTDELSKANEFSNEGYGSVKRDFVGSDKDNCIPK 227 (272)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~ 227 (272)
-..+...+. ........+ ..+.+...+.....+.|+||+++-.|-.|.++||
T Consensus 225 ---------------y~~~~~~~~~~d~~~~~~~~-----------v~~~L~Y~D~~nfA~ri~~pvl~~~gl~D~~cPP 278 (320)
T PF05448_consen 225 ---------------YPEIRRYFRWRDPHHEREPE-----------VFETLSYFDAVNFARRIKCPVLFSVGLQDPVCPP 278 (320)
T ss_dssp ---------------THHHHHHHHHHSCTHCHHHH-----------HHHHHHTT-HHHHGGG--SEEEEEEETT-SSS-H
T ss_pred ---------------HHHHHHHHhccCCCcccHHH-----------HHHHHhhhhHHHHHHHcCCCEEEEEecCCCCCCc
Confidence 000000100 000000000 1122233334444666799999999999999999
Q ss_pred HHHHHHHhcCC-CceEEEecCCCcccccCCCchH-HHHHHHHHHhh
Q 024134 228 EFQQWMIQNNP-VNEVMAIKGADHMAMLSKPQPL-SDCFSQIAHKY 271 (272)
Q Consensus 228 ~~~~~~~~~~~-~~~~~~~~~~gH~~~~~~p~~~-~~~i~~fl~~~ 271 (272)
...-.....++ ..++.+++..||... .+. .+...+||.++
T Consensus 279 ~t~fA~yN~i~~~K~l~vyp~~~He~~----~~~~~~~~~~~l~~~ 320 (320)
T PF05448_consen 279 STQFAAYNAIPGPKELVVYPEYGHEYG----PEFQEDKQLNFLKEH 320 (320)
T ss_dssp HHHHHHHCC--SSEEEEEETT--SSTT----HHHHHHHHHHHHHH-
T ss_pred hhHHHHHhccCCCeeEEeccCcCCCch----hhHHHHHHHHHHhcC
Confidence 99998888886 568999999999753 334 67778888763
No 94
>COG0400 Predicted esterase [General function prediction only]
Probab=99.71 E-value=7.4e-16 Score=108.37 Aligned_cols=171 Identities=12% Similarity=0.063 Sum_probs=114.6
Q ss_pred cCCCeEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCCCCCCCC-------cccccccchhhc-------hHHHHHHHH
Q 024134 14 KKQKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINM-------KKIQDVRSFYEY-------NEPLLEILA 79 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~-------~~~~~~~~~~~~-------~~~~~~~i~ 79 (272)
...|+||++||+|++...+-++...+... +.++.+ ||--.-. ......++.+++ ++.+....+
T Consensus 16 p~~~~iilLHG~Ggde~~~~~~~~~~~P~-~~~is~--rG~v~~~g~~~~f~~~~~~~~d~edl~~~~~~~~~~l~~~~~ 92 (207)
T COG0400 16 PAAPLLILLHGLGGDELDLVPLPELILPN-ATLVSP--RGPVAENGGPRFFRRYDEGSFDQEDLDLETEKLAEFLEELAE 92 (207)
T ss_pred CCCcEEEEEecCCCChhhhhhhhhhcCCC-CeEEcC--CCCccccCcccceeecCCCccchhhHHHHHHHHHHHHHHHHH
Confidence 44568999999999999888866655443 555554 2211100 000111233333 333333333
Q ss_pred Hh-cCCCcEEEEEeCcchHHHHHHHhhCccceeeeeeeeccCCCCCCCchhhhhhcccCCchhhhhhhhhhccccCCCcc
Q 024134 80 SL-SADEKVILVGHSFGGLSVALAADKFPHKISVAIFLTAFMPDTKHQPSYVVERFSESIPREERLDTQYSIIDESNPSR 158 (272)
Q Consensus 80 ~l-~~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (272)
+. ...++++++|+|-||++++.+..++|+.++++|++++..+......
T Consensus 93 ~~gi~~~~ii~~GfSqGA~ial~~~l~~~~~~~~ail~~g~~~~~~~~~------------------------------- 141 (207)
T COG0400 93 EYGIDSSRIILIGFSQGANIALSLGLTLPGLFAGAILFSGMLPLEPELL------------------------------- 141 (207)
T ss_pred HhCCChhheEEEecChHHHHHHHHHHhCchhhccchhcCCcCCCCCccc-------------------------------
Confidence 33 1348999999999999999999999999999999998754321100
Q ss_pred chhhhhhhHHHHhhccCCChhHHHHHHHhccCCccchHHhhhcccccccccCCceeEEEEeCCCCCccHHHHHHHHhcC-
Q 024134 159 MSILFGHKFLTLKLYQLSPPEDLELAKMLVKPGLLFTDELSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNN- 237 (272)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~- 237 (272)
......|+++++|+.|+++|.....++.+.+
T Consensus 142 ------------------------------------------------~~~~~~pill~hG~~Dpvvp~~~~~~l~~~l~ 173 (207)
T COG0400 142 ------------------------------------------------PDLAGTPILLSHGTEDPVVPLALAEALAEYLT 173 (207)
T ss_pred ------------------------------------------------cccCCCeEEEeccCcCCccCHHHHHHHHHHHH
Confidence 0001789999999999999998877777655
Q ss_pred ---CCceEEEecCCCcccccCCCchHHHHHHHHHHhh
Q 024134 238 ---PVNEVMAIKGADHMAMLSKPQPLSDCFSQIAHKY 271 (272)
Q Consensus 238 ---~~~~~~~~~~~gH~~~~~~p~~~~~~i~~fl~~~ 271 (272)
-+++...++ +||.+.. +-.+.+.+|+.+.
T Consensus 174 ~~g~~v~~~~~~-~GH~i~~----e~~~~~~~wl~~~ 205 (207)
T COG0400 174 ASGADVEVRWHE-GGHEIPP----EELEAARSWLANT 205 (207)
T ss_pred HcCCCEEEEEec-CCCcCCH----HHHHHHHHHHHhc
Confidence 356888888 9998854 4556666777653
No 95
>PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function. This family contains many hypothetical proteins. ; PDB: 2Q0X_B.
Probab=99.70 E-value=2e-16 Score=115.85 Aligned_cols=235 Identities=19% Similarity=0.195 Sum_probs=85.6
Q ss_pred CCCeEEEEecCCCcchh---HHhhHHHHHhCCCeEEEEcCC----CCCCCCcccccccchhhchHHHHHHHHHhc-----
Q 024134 15 KQKHFVLVHGSNHGAWC---WYKVKPRLEAAGHRVTAMDLA----ASGINMKKIQDVRSFYEYNEPLLEILASLS----- 82 (272)
Q Consensus 15 ~~~~vv~lhG~~~~~~~---~~~~~~~l~~~g~~v~~~d~~----G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~----- 82 (272)
....||||.|++.+-.. ...+++.|.+.||.++-+-++ |+|. .++++-+++|.++++++.
T Consensus 32 ~~~~llfIGGLtDGl~tvpY~~~La~aL~~~~wsl~q~~LsSSy~G~G~--------~SL~~D~~eI~~~v~ylr~~~~g 103 (303)
T PF08538_consen 32 APNALLFIGGLTDGLLTVPYLPDLAEALEETGWSLFQVQLSSSYSGWGT--------SSLDRDVEEIAQLVEYLRSEKGG 103 (303)
T ss_dssp SSSEEEEE--TT--TT-STCHHHHHHHHT-TT-EEEEE--GGGBTTS-S----------HHHHHHHHHHHHHHHHHHS--
T ss_pred CCcEEEEECCCCCCCCCCchHHHHHHHhccCCeEEEEEEecCccCCcCc--------chhhhHHHHHHHHHHHHHHhhcc
Confidence 35589999999865543 567888887779999999765 4444 377777888888888771
Q ss_pred --CCCcEEEEEeCcchHHHHHHHhhCc-----cceeeeeeeeccCCCCCCCchhhh-hhcccCCchhhhhhhhhhccc-c
Q 024134 83 --ADEKVILVGHSFGGLSVALAADKFP-----HKISVAIFLTAFMPDTKHQPSYVV-ERFSESIPREERLDTQYSIID-E 153 (272)
Q Consensus 83 --~~~~~~lvG~S~Gg~~a~~~a~~~p-----~~v~~lvl~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~ 153 (272)
+.++|+|+|||.|+.-+++++.... ..|++.||-+|............. ..+ ............ .
T Consensus 104 ~~~~~kIVLmGHSTGcQdvl~Yl~~~~~~~~~~~VdG~ILQApVSDREa~~~~~~~~~~~------~~~v~~A~~~i~~g 177 (303)
T PF08538_consen 104 HFGREKIVLMGHSTGCQDVLHYLSSPNPSPSRPPVDGAILQAPVSDREAILNFLGEREAY------EELVALAKELIAEG 177 (303)
T ss_dssp ----S-EEEEEECCHHHHHHHHHHH-TT---CCCEEEEEEEEE---TTSTTTSHHH---H------HHHHHHHHHHHHCT
T ss_pred ccCCccEEEEecCCCcHHHHHHHhccCccccccceEEEEEeCCCCChhHhhhcccchHHH------HHHHHHHHHHHHcC
Confidence 3578999999999999999987653 569999999997543322221110 001 111111100000 0
Q ss_pred CCCccchhhhhhhHHHHhhccCCChhHHHHHHHhccCC---ccchHHhhhcccccccccCCceeEEEEeCCCCCccHHHH
Q 024134 154 SNPSRMSILFGHKFLTLKLYQLSPPEDLELAKMLVKPG---LLFTDELSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQ 230 (272)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~ 230 (272)
.. ...+..++.....+ ..+-....+..+.... ..|..++...........++.|+|++.+++|..+|...-
T Consensus 178 ~~----~~~lp~~~~~~~~~--~~PiTA~Rf~SL~s~~gdDD~FSSDL~de~l~~tfG~v~~plLvl~Sg~DEyvP~~vd 251 (303)
T PF08538_consen 178 KG----DEILPREFTPLVFY--DTPITAYRFLSLASPGGDDDYFSSDLSDERLKKTFGKVSKPLLVLYSGKDEYVPPWVD 251 (303)
T ss_dssp -T----T-GG----GGTTT---SS---HHHHHT-S-SSHHHHTHHHHHTT-HHHHTGGG--S-EEEEEE--TT-------
T ss_pred CC----CceeeccccccccC--CCcccHHHHHhccCCCCcccccCCCCCHHHHHHHhccCCCceEEEecCCCceeccccc
Confidence 00 00000011000000 1111111111111111 112222222222233455678999999999999987532
Q ss_pred -HHHHhcCCC--------ceEEEecCCCcccccCCC----chHHHHHHHHHH
Q 024134 231 -QWMIQNNPV--------NEVMAIKGADHMAMLSKP----QPLSDCFSQIAH 269 (272)
Q Consensus 231 -~~~~~~~~~--------~~~~~~~~~gH~~~~~~p----~~~~~~i~~fl~ 269 (272)
+.+.+++.. ..-.++||++|.+--+.. +.+.+.+..||+
T Consensus 252 k~~Ll~rw~~a~~~~~~s~~S~iI~GA~H~~~~~~~~~~~~~l~~rV~~fl~ 303 (303)
T PF08538_consen 252 KEALLERWKAATNPKIWSPLSGIIPGASHNVSGPSQAEAREWLVERVVKFLK 303 (303)
T ss_dssp ----------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccCC
Confidence 233333321 224589999999765433 357777788874
No 96
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=99.68 E-value=5.7e-15 Score=102.69 Aligned_cols=181 Identities=15% Similarity=0.175 Sum_probs=111.2
Q ss_pred EEEEecCCCcchhHH--hhHHHHHhCC--CeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcCCCcEEEEEeCc
Q 024134 19 FVLVHGSNHGAWCWY--KVKPRLEAAG--HRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSADEKVILVGHSF 94 (272)
Q Consensus 19 vv~lhG~~~~~~~~~--~~~~~l~~~g--~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~lvG~S~ 94 (272)
|+++||+.+++.... .+.+.+++.+ ..+.++|++ ....+..+.+.++++.. ..+.+.|||.||
T Consensus 2 ilYlHGF~Ssp~S~Ka~~l~~~~~~~~~~~~~~~p~l~------------~~p~~a~~~l~~~i~~~-~~~~~~liGSSl 68 (187)
T PF05728_consen 2 ILYLHGFNSSPQSFKAQALKQYFAEHGPDIQYPCPDLP------------PFPEEAIAQLEQLIEEL-KPENVVLIGSSL 68 (187)
T ss_pred eEEecCCCCCCCCHHHHHHHHHHHHhCCCceEECCCCC------------cCHHHHHHHHHHHHHhC-CCCCeEEEEECh
Confidence 799999999887754 4556666554 456777765 46677788888999988 666799999999
Q ss_pred chHHHHHHHhhCccceeeeeeeeccCCCCCCCchhhhhhcccCCchhhhhhhhhhccccCCCccchhhhhhhHHHHhhcc
Q 024134 95 GGLSVALAADKFPHKISVAIFLTAFMPDTKHQPSYVVERFSESIPREERLDTQYSIIDESNPSRMSILFGHKFLTLKLYQ 174 (272)
Q Consensus 95 Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (272)
||..|..+|.+++ +++ |+++|...... .+...... ....... ....+......
T Consensus 69 GG~~A~~La~~~~--~~a-vLiNPav~p~~-----~l~~~iG~---------~~~~~~~-----e~~~~~~~~~~----- 121 (187)
T PF05728_consen 69 GGFYATYLAERYG--LPA-VLINPAVRPYE-----LLQDYIGE---------QTNPYTG-----ESYELTEEHIE----- 121 (187)
T ss_pred HHHHHHHHHHHhC--CCE-EEEcCCCCHHH-----HHHHhhCc---------cccCCCC-----ccceechHhhh-----
Confidence 9999999999886 444 88998754221 11111110 0000000 00000000000
Q ss_pred CCChhHHHHHHHhccCCccchHHhhhcccccccccCCceeEEEEeCCCCCccHHHHHHHHhcCCCceEEEecCCCccccc
Q 024134 175 LSPPEDLELAKMLVKPGLLFTDELSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNNPVNEVMAIKGADHMAML 254 (272)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~ 254 (272)
....+ .... .....+++++.++.|.+++...+. ..+.++..++.+|++|-+
T Consensus 122 --------~l~~l---------------~~~~-~~~~~~~lvll~~~DEvLd~~~a~---~~~~~~~~~i~~ggdH~f-- 172 (187)
T PF05728_consen 122 --------ELKAL---------------EVPY-PTNPERYLVLLQTGDEVLDYREAV---AKYRGCAQIIEEGGDHSF-- 172 (187)
T ss_pred --------hcceE---------------eccc-cCCCccEEEEEecCCcccCHHHHH---HHhcCceEEEEeCCCCCC--
Confidence 00000 0000 111568999999999999985443 334456667778899985
Q ss_pred CCCchHHHHHHHHH
Q 024134 255 SKPQPLSDCFSQIA 268 (272)
Q Consensus 255 ~~p~~~~~~i~~fl 268 (272)
++=++....|.+|+
T Consensus 173 ~~f~~~l~~i~~f~ 186 (187)
T PF05728_consen 173 QDFEEYLPQIIAFL 186 (187)
T ss_pred ccHHHHHHHHHHhh
Confidence 34556677777776
No 97
>COG4757 Predicted alpha/beta hydrolase [General function prediction only]
Probab=99.67 E-value=1.4e-15 Score=105.07 Aligned_cols=233 Identities=15% Similarity=0.145 Sum_probs=131.2
Q ss_pred eEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCCCCCCCCcccc--cccchhhchH-HHHHHHHHh---cCCCcEEEEE
Q 024134 18 HFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQ--DVRSFYEYNE-PLLEILASL---SADEKVILVG 91 (272)
Q Consensus 18 ~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~--~~~~~~~~~~-~~~~~i~~l---~~~~~~~lvG 91 (272)
.++.-.+.+.....|++++..++++||+|.++|+||.|.|..... ..+++.|++. |+...++.+ ....+.+.||
T Consensus 32 ~~~va~a~Gv~~~fYRrfA~~a~~~Gf~Vlt~dyRG~g~S~p~~~~~~~~~~~DwA~~D~~aal~~~~~~~~~~P~y~vg 111 (281)
T COG4757 32 RLVVAGATGVGQYFYRRFAAAAAKAGFEVLTFDYRGIGQSRPASLSGSQWRYLDWARLDFPAALAALKKALPGHPLYFVG 111 (281)
T ss_pred cEEecccCCcchhHhHHHHHHhhccCceEEEEecccccCCCccccccCccchhhhhhcchHHHHHHHHhhCCCCceEEee
Confidence 456666667777788999999999999999999999999976543 2356666654 555555554 1567899999
Q ss_pred eCcchHHHHHHHhhCccceeeeeeeeccCCCCCCCchhhhhhcccCCchhhhhhhhhhccccCCCccchhhhhhhHHHHh
Q 024134 92 HSFGGLSVALAADKFPHKISVAIFLTAFMPDTKHQPSYVVERFSESIPREERLDTQYSIIDESNPSRMSILFGHKFLTLK 171 (272)
Q Consensus 92 ~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (272)
||+||.+.-.+. +++ +..+....+....... .. .....+ ..+. +.....+. ...+ +..+...
T Consensus 112 HS~GGqa~gL~~-~~~-k~~a~~vfG~gagwsg-~m-~~~~~l------~~~~---l~~lv~p~----lt~w-~g~~p~~ 173 (281)
T COG4757 112 HSFGGQALGLLG-QHP-KYAAFAVFGSGAGWSG-WM-GLRERL------GAVL---LWNLVGPP----LTFW-KGYMPKD 173 (281)
T ss_pred ccccceeecccc-cCc-ccceeeEecccccccc-ch-hhhhcc------ccee---eccccccc----hhhc-cccCcHh
Confidence 999998766555 455 3333333332211000 00 000000 0000 00000000 0000 0011111
Q ss_pred hcc---CCChhHHHHHHHhccCCccchHHhhhcccccccccCCceeEEEEeCCCCCccHHHHHHHHhcCCCceEE--Eec
Q 024134 172 LYQ---LSPPEDLELAKMLVKPGLLFTDELSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNNPVNEVM--AIK 246 (272)
Q Consensus 172 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~--~~~ 246 (272)
+.. ..+......+..+.+..+.+..+-...........+++|++++...+|+.+|+...+.+.+..+|+.+. .++
T Consensus 174 l~G~G~d~p~~v~RdW~RwcR~p~y~fddp~~~~~~q~yaaVrtPi~~~~~~DD~w~P~As~d~f~~~y~nApl~~~~~~ 253 (281)
T COG4757 174 LLGLGSDLPGTVMRDWARWCRHPRYYFDDPAMRNYRQVYAAVRTPITFSRALDDPWAPPASRDAFASFYRNAPLEMRDLP 253 (281)
T ss_pred hcCCCccCcchHHHHHHHHhcCccccccChhHhHHHHHHHHhcCceeeeccCCCCcCCHHHHHHHHHhhhcCcccceecC
Confidence 111 112222233334443333332221111112223345899999999999999999999999998887544 344
Q ss_pred C----CCcccccCCC-chHHHHHHHHH
Q 024134 247 G----ADHMAMLSKP-QPLSDCFSQIA 268 (272)
Q Consensus 247 ~----~gH~~~~~~p-~~~~~~i~~fl 268 (272)
. -||+-...+| |.+.+.+.+|+
T Consensus 254 ~~~~~lGH~gyfR~~~Ealwk~~L~w~ 280 (281)
T COG4757 254 RAEGPLGHMGYFREPFEALWKEMLGWF 280 (281)
T ss_pred cccCcccchhhhccchHHHHHHHHHhh
Confidence 3 5999999888 66766666654
No 98
>TIGR00976 /NonD putative hydrolase, CocE/NonD family. This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases.
Probab=99.67 E-value=5e-15 Score=121.61 Aligned_cols=105 Identities=13% Similarity=0.040 Sum_probs=83.9
Q ss_pred cCCCeEEEEecCCCcch---hH-HhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhc----CCC
Q 024134 14 KKQKHFVLVHGSNHGAW---CW-YKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLS----ADE 85 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~---~~-~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~----~~~ 85 (272)
+..|+||++||++.+.. .+ ......|+++||.|+++|+||+|.|.+.... .+ .+.++|+.++++.+. ...
T Consensus 20 ~~~P~Il~~~gyg~~~~~~~~~~~~~~~~l~~~Gy~vv~~D~RG~g~S~g~~~~-~~-~~~~~D~~~~i~~l~~q~~~~~ 97 (550)
T TIGR00976 20 GPVPVILSRTPYGKDAGLRWGLDKTEPAWFVAQGYAVVIQDTRGRGASEGEFDL-LG-SDEAADGYDLVDWIAKQPWCDG 97 (550)
T ss_pred CCCCEEEEecCCCCchhhccccccccHHHHHhCCcEEEEEeccccccCCCceEe-cC-cccchHHHHHHHHHHhCCCCCC
Confidence 45689999999987653 12 2345678889999999999999999875432 23 567788888888771 236
Q ss_pred cEEEEEeCcchHHHHHHHhhCccceeeeeeeeccC
Q 024134 86 KVILVGHSFGGLSVALAADKFPHKISVAIFLTAFM 120 (272)
Q Consensus 86 ~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~ 120 (272)
++.++|||+||.+++.+|..+|++++++|..++..
T Consensus 98 ~v~~~G~S~GG~~a~~~a~~~~~~l~aiv~~~~~~ 132 (550)
T TIGR00976 98 NVGMLGVSYLAVTQLLAAVLQPPALRAIAPQEGVW 132 (550)
T ss_pred cEEEEEeChHHHHHHHHhccCCCceeEEeecCccc
Confidence 89999999999999999999999999999888764
No 99
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.66 E-value=1e-14 Score=106.09 Aligned_cols=178 Identities=17% Similarity=0.086 Sum_probs=128.2
Q ss_pred cCCCeEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCCCC-CCCCcccc-----c-----ccchhhchHHHHHHHHHhc
Q 024134 14 KKQKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAAS-GINMKKIQ-----D-----VRSFYEYNEPLLEILASLS 82 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~-G~s~~~~~-----~-----~~~~~~~~~~~~~~i~~l~ 82 (272)
++.|.||++|++.+-....+.+++.|+..||.|+++|+-+. |.+..... . ..+..+...|+.+.++.+.
T Consensus 25 ~~~P~VIv~hei~Gl~~~i~~~a~rlA~~Gy~v~~Pdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~~~~L~ 104 (236)
T COG0412 25 GGFPGVIVLHEIFGLNPHIRDVARRLAKAGYVVLAPDLYGRQGDPTDIEDEPAELETGLVERVDPAEVLADIDAALDYLA 104 (236)
T ss_pred CCCCEEEEEecccCCchHHHHHHHHHHhCCcEEEechhhccCCCCCcccccHHHHhhhhhccCCHHHHHHHHHHHHHHHH
Confidence 34489999999999999999999999999999999998763 33322110 0 1223566778888887772
Q ss_pred -----CCCcEEEEEeCcchHHHHHHHhhCccceeeeeeeeccCCCCCCCchhhhhhcccCCchhhhhhhhhhccccCCCc
Q 024134 83 -----ADEKVILVGHSFGGLSVALAADKFPHKISVAIFLTAFMPDTKHQPSYVVERFSESIPREERLDTQYSIIDESNPS 157 (272)
Q Consensus 83 -----~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (272)
..+++.++|+||||.+++.++.+.| .+++.+..-+........
T Consensus 105 ~~~~~~~~~ig~~GfC~GG~~a~~~a~~~~-~v~a~v~fyg~~~~~~~~------------------------------- 152 (236)
T COG0412 105 RQPQVDPKRIGVVGFCMGGGLALLAATRAP-EVKAAVAFYGGLIADDTA------------------------------- 152 (236)
T ss_pred hCCCCCCceEEEEEEcccHHHHHHhhcccC-CccEEEEecCCCCCCccc-------------------------------
Confidence 2467999999999999999998877 688887666542211000
Q ss_pred cchhhhhhhHHHHhhccCCChhHHHHHHHhccCCccchHHhhhcccccccccCCceeEEEEeCCCCCccHHHHHHHHhcC
Q 024134 158 RMSILFGHKFLTLKLYQLSPPEDLELAKMLVKPGLLFTDELSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNN 237 (272)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~ 237 (272)
...++++|++++.|+.|..+|....+.+.+.+
T Consensus 153 ------------------------------------------------~~~~~~~pvl~~~~~~D~~~p~~~~~~~~~~~ 184 (236)
T COG0412 153 ------------------------------------------------DAPKIKVPVLLHLAGEDPYIPAADVDALAAAL 184 (236)
T ss_pred ------------------------------------------------ccccccCcEEEEecccCCCCChhHHHHHHHHH
Confidence 01123899999999999999988766666554
Q ss_pred C----CceEEEecCCCcccccCC----C-------chHHHHHHHHHHhh
Q 024134 238 P----VNEVMAIKGADHMAMLSK----P-------QPLSDCFSQIAHKY 271 (272)
Q Consensus 238 ~----~~~~~~~~~~gH~~~~~~----p-------~~~~~~i~~fl~~~ 271 (272)
. .+++.+++++.|.+..+. + +.-.+.+.+|+++.
T Consensus 185 ~~~~~~~~~~~y~ga~H~F~~~~~~~~~~y~~~aa~~a~~~~~~ff~~~ 233 (236)
T COG0412 185 EDAGVKVDLEIYPGAGHGFANDRADYHPGYDAAAAEDAWQRVLAFFKRL 233 (236)
T ss_pred HhcCCCeeEEEeCCCccccccCCCcccccCCHHHHHHHHHHHHHHHHHh
Confidence 2 578899999999888553 1 23345666777653
No 100
>PRK10115 protease 2; Provisional
Probab=99.65 E-value=9.1e-15 Score=122.06 Aligned_cols=193 Identities=12% Similarity=0.085 Sum_probs=122.1
Q ss_pred cCCCeEEEEecCCCcchh--HHhhHHHHHhCCCeEEEEcCCCCCCCCc---c----cccccchhhchHHHHHHHHHh-cC
Q 024134 14 KKQKHFVLVHGSNHGAWC--WYKVKPRLEAAGHRVTAMDLAASGINMK---K----IQDVRSFYEYNEPLLEILASL-SA 83 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~--~~~~~~~l~~~g~~v~~~d~~G~G~s~~---~----~~~~~~~~~~~~~~~~~i~~l-~~ 83 (272)
++.|+||++||..+.+.. |......|.++||.|+.++.||-|.-.. . .....+++|+++.+..+++.- ..
T Consensus 443 ~~~P~ll~~hGg~~~~~~p~f~~~~~~l~~rG~~v~~~n~RGs~g~G~~w~~~g~~~~k~~~~~D~~a~~~~Lv~~g~~d 522 (686)
T PRK10115 443 GHNPLLVYGYGSYGASIDADFSFSRLSLLDRGFVYAIVHVRGGGELGQQWYEDGKFLKKKNTFNDYLDACDALLKLGYGS 522 (686)
T ss_pred CCCCEEEEEECCCCCCCCCCccHHHHHHHHCCcEEEEEEcCCCCccCHHHHHhhhhhcCCCcHHHHHHHHHHHHHcCCCC
Confidence 456999999998777643 6666677888999999999999665432 1 112235555555555554432 24
Q ss_pred CCcEEEEEeCcchHHHHHHHhhCccceeeeeeeeccCCCCCCCchhhhhhccc-CCchhhhhhhhhhccccCCCccchhh
Q 024134 84 DEKVILVGHSFGGLSVALAADKFPHKISVAIFLTAFMPDTKHQPSYVVERFSE-SIPREERLDTQYSIIDESNPSRMSIL 162 (272)
Q Consensus 84 ~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (272)
.+++.+.|.|.||.++..++.++|++++++|...|...... .+.. ... ..
T Consensus 523 ~~rl~i~G~S~GG~l~~~~~~~~Pdlf~A~v~~vp~~D~~~--------~~~~~~~p--~~------------------- 573 (686)
T PRK10115 523 PSLCYGMGGSAGGMLMGVAINQRPELFHGVIAQVPFVDVVT--------TMLDESIP--LT------------------- 573 (686)
T ss_pred hHHeEEEEECHHHHHHHHHHhcChhheeEEEecCCchhHhh--------hcccCCCC--CC-------------------
Confidence 67899999999999999999999999999998888643211 0000 000 00
Q ss_pred hhhhHHHHhhccCCChhHHHHHHHhccCCccchHHhhhcccccccccCCce-eEEEEeCCCCCccHHHHHHHHhcC----
Q 024134 163 FGHKFLTLKLYQLSPPEDLELAKMLVKPGLLFTDELSKANEFSNEGYGSVK-RDFVGSDKDNCIPKEFQQWMIQNN---- 237 (272)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P-~l~i~g~~D~~~~~~~~~~~~~~~---- 237 (272)
....... ......+.. ..+...+++.....++.| +|+++|.+|.-||+..+.++...+
T Consensus 574 --~~~~~e~-G~p~~~~~~--------------~~l~~~SP~~~v~~~~~P~lLi~~g~~D~RV~~~~~~k~~a~Lr~~~ 636 (686)
T PRK10115 574 --TGEFEEW-GNPQDPQYY--------------EYMKSYSPYDNVTAQAYPHLLVTTGLHDSQVQYWEPAKWVAKLRELK 636 (686)
T ss_pred --hhHHHHh-CCCCCHHHH--------------HHHHHcCchhccCccCCCceeEEecCCCCCcCchHHHHHHHHHHhcC
Confidence 0000000 000001111 112233444445556789 567799999999988877776655
Q ss_pred CCceEEEe---cCCCccc
Q 024134 238 PVNEVMAI---KGADHMA 252 (272)
Q Consensus 238 ~~~~~~~~---~~~gH~~ 252 (272)
...+++++ +++||..
T Consensus 637 ~~~~~vl~~~~~~~GHg~ 654 (686)
T PRK10115 637 TDDHLLLLCTDMDSGHGG 654 (686)
T ss_pred CCCceEEEEecCCCCCCC
Confidence 34577788 8999993
No 101
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=99.63 E-value=5.1e-16 Score=92.10 Aligned_cols=72 Identities=21% Similarity=0.279 Sum_probs=63.7
Q ss_pred hhhhhccC-CCeEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHH
Q 024134 8 KKMTEAKK-QKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILA 79 (272)
Q Consensus 8 ~~~~~~~~-~~~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~ 79 (272)
..|.++.. +.+|+++||++.++..|..+++.|+++||.|+++|+||||.|++......+++++++|+..+++
T Consensus 7 ~~w~p~~~~k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~D~rGhG~S~g~rg~~~~~~~~v~D~~~~~~ 79 (79)
T PF12146_consen 7 RRWKPENPPKAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAYDHRGHGRSEGKRGHIDSFDDYVDDLHQFIQ 79 (79)
T ss_pred EEecCCCCCCEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEECCCcCCCCCCcccccCCHHHHHHHHHHHhC
Confidence 34555554 7899999999999999999999999999999999999999999877766799999999998874
No 102
>KOG2565 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.62 E-value=9e-15 Score=108.06 Aligned_cols=102 Identities=19% Similarity=0.234 Sum_probs=91.2
Q ss_pred CeEEEEecCCCcchhHHhhHHHHHhC---------CCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcCCCcE
Q 024134 17 KHFVLVHGSNHGAWCWYKVKPRLEAA---------GHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSADEKV 87 (272)
Q Consensus 17 ~~vv~lhG~~~~~~~~~~~~~~l~~~---------g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~ 87 (272)
.|++++|||+++-..|..+++.|.+. -|+||++.+||+|.|+.+.....+..+.|.-+..++-.+ +.+++
T Consensus 153 ~PlLl~HGwPGsv~EFykfIPlLT~p~~hg~~~d~~FEVI~PSlPGygwSd~~sk~GFn~~a~ArvmrkLMlRL-g~nkf 231 (469)
T KOG2565|consen 153 KPLLLLHGWPGSVREFYKFIPLLTDPKRHGNESDYAFEVIAPSLPGYGWSDAPSKTGFNAAATARVMRKLMLRL-GYNKF 231 (469)
T ss_pred cceEEecCCCchHHHHHhhhhhhcCccccCCccceeEEEeccCCCCcccCcCCccCCccHHHHHHHHHHHHHHh-Cccee
Confidence 48999999999999999999998753 268999999999999998877788888899999999999 99999
Q ss_pred EEEEeCcchHHHHHHHhhCccceeeeeeeecc
Q 024134 88 ILVGHSFGGLSVALAADKFPHKISVAIFLTAF 119 (272)
Q Consensus 88 ~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~ 119 (272)
.+-|-.||+.++..+|..+|++|.++-+--+.
T Consensus 232 fiqGgDwGSiI~snlasLyPenV~GlHlnm~~ 263 (469)
T KOG2565|consen 232 FIQGGDWGSIIGSNLASLYPENVLGLHLNMCF 263 (469)
T ss_pred EeecCchHHHHHHHHHhhcchhhhHhhhcccc
Confidence 99999999999999999999999887655444
No 103
>COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=99.62 E-value=8.3e-14 Score=90.76 Aligned_cols=179 Identities=17% Similarity=0.131 Sum_probs=123.6
Q ss_pred eEEEEecCCCcchh--HHhhHHHHHhCCCeEEEEcCCCCCCC-----CcccccccchhhchHHHHHHHHHhcCCCcEEEE
Q 024134 18 HFVLVHGSNHGAWC--WYKVKPRLEAAGHRVTAMDLAASGIN-----MKKIQDVRSFYEYNEPLLEILASLSADEKVILV 90 (272)
Q Consensus 18 ~vv~lhG~~~~~~~--~~~~~~~l~~~g~~v~~~d~~G~G~s-----~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~lv 90 (272)
+||+.||.|.+-++ ....+..|+.+|+.|..++++..-.. .+++....-..++...+.++...+ ...|.++-
T Consensus 16 tilLaHGAGasmdSt~m~~~a~~la~~G~~vaRfefpYma~Rrtg~rkPp~~~~t~~~~~~~~~aql~~~l-~~gpLi~G 94 (213)
T COG3571 16 TILLAHGAGASMDSTSMTAVAAALARRGWLVARFEFPYMAARRTGRRKPPPGSGTLNPEYIVAIAQLRAGL-AEGPLIIG 94 (213)
T ss_pred EEEEecCCCCCCCCHHHHHHHHHHHhCceeEEEeecchhhhccccCCCCcCccccCCHHHHHHHHHHHhcc-cCCceeec
Confidence 89999999876554 67889999999999999998864322 222322234456667777777777 66799999
Q ss_pred EeCcchHHHHHHHhhCccceeeeeeeeccCCCCCCCchhhhhhcccCCchhhhhhhhhhccccCCCccchhhhhhhHHHH
Q 024134 91 GHSFGGLSVALAADKFPHKISVAIFLTAFMPDTKHQPSYVVERFSESIPREERLDTQYSIIDESNPSRMSILFGHKFLTL 170 (272)
Q Consensus 91 G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (272)
|+||||.++.+++......|+++++++-++...+.+.. . +
T Consensus 95 GkSmGGR~aSmvade~~A~i~~L~clgYPfhppGKPe~-----~----------------------------------R- 134 (213)
T COG3571 95 GKSMGGRVASMVADELQAPIDGLVCLGYPFHPPGKPEQ-----L----------------------------------R- 134 (213)
T ss_pred cccccchHHHHHHHhhcCCcceEEEecCccCCCCCccc-----c----------------------------------h-
Confidence 99999999999998766669999998855433332210 0 0
Q ss_pred hhccCCChhHHHHHHHhccCCccchHHhhhcccccccccCCceeEEEEeCCCCCccHHHHHHHHhcCCCceEEEecCCCc
Q 024134 171 KLYQLSPPEDLELAKMLVKPGLLFTDELSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNNPVNEVMAIKGADH 250 (272)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH 250 (272)
...+.-+++|++|.+|+.|.+-..+..... ...+..++++++++.|
T Consensus 135 ---------------------------------t~HL~gl~tPtli~qGtrD~fGtr~~Va~y-~ls~~iev~wl~~adH 180 (213)
T COG3571 135 ---------------------------------TEHLTGLKTPTLITQGTRDEFGTRDEVAGY-ALSDPIEVVWLEDADH 180 (213)
T ss_pred ---------------------------------hhhccCCCCCeEEeecccccccCHHHHHhh-hcCCceEEEEeccCcc
Confidence 000111389999999999999877665322 2235679999999999
Q ss_pred ccccCC----------CchHHHHHHHHHHhh
Q 024134 251 MAMLSK----------PQPLSDCFSQIAHKY 271 (272)
Q Consensus 251 ~~~~~~----------p~~~~~~i~~fl~~~ 271 (272)
.+--.. -...++.|..|+.+.
T Consensus 181 DLkp~k~vsgls~~~hL~~~A~~va~~~~~l 211 (213)
T COG3571 181 DLKPRKLVSGLSTADHLKTLAEQVAGWARRL 211 (213)
T ss_pred ccccccccccccHHHHHHHHHHHHHHHHhhc
Confidence 753221 123456666676654
No 104
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=99.61 E-value=2.2e-14 Score=129.83 Aligned_cols=103 Identities=17% Similarity=0.170 Sum_probs=88.0
Q ss_pred cCCCeEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcCCCcEEEEEeC
Q 024134 14 KKQKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSADEKVILVGHS 93 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~lvG~S 93 (272)
+++++++|+||++++...|..+.+.|. .+++|++++.+|++.+.. ..++++++++++.+.++.+....+++++|||
T Consensus 1066 ~~~~~l~~lh~~~g~~~~~~~l~~~l~-~~~~v~~~~~~g~~~~~~---~~~~l~~la~~~~~~i~~~~~~~p~~l~G~S 1141 (1296)
T PRK10252 1066 GDGPTLFCFHPASGFAWQFSVLSRYLD-PQWSIYGIQSPRPDGPMQ---TATSLDEVCEAHLATLLEQQPHGPYHLLGYS 1141 (1296)
T ss_pred CCCCCeEEecCCCCchHHHHHHHHhcC-CCCcEEEEECCCCCCCCC---CCCCHHHHHHHHHHHHHhhCCCCCEEEEEec
Confidence 346789999999999999999999996 459999999999987632 2369999999999999987345689999999
Q ss_pred cchHHHHHHHhh---CccceeeeeeeeccC
Q 024134 94 FGGLSVALAADK---FPHKISVAIFLTAFM 120 (272)
Q Consensus 94 ~Gg~~a~~~a~~---~p~~v~~lvl~~~~~ 120 (272)
+||.++.++|.+ .++++..++++++..
T Consensus 1142 ~Gg~vA~e~A~~l~~~~~~v~~l~l~~~~~ 1171 (1296)
T PRK10252 1142 LGGTLAQGIAARLRARGEEVAFLGLLDTWP 1171 (1296)
T ss_pred hhhHHHHHHHHHHHHcCCceeEEEEecCCC
Confidence 999999999985 577899999998753
No 105
>COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.61 E-value=4.1e-14 Score=102.70 Aligned_cols=101 Identities=14% Similarity=0.223 Sum_probs=88.0
Q ss_pred CeEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcCCCcEEEEEeCcch
Q 024134 17 KHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSADEKVILVGHSFGG 96 (272)
Q Consensus 17 ~~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~lvG~S~Gg 96 (272)
|+++++|+.++....|..+...|... ..|+.++.||.+.-.... .+++++++...+.|....+..+++|+|||+||
T Consensus 1 ~pLF~fhp~~G~~~~~~~L~~~l~~~-~~v~~l~a~g~~~~~~~~---~~l~~~a~~yv~~Ir~~QP~GPy~L~G~S~GG 76 (257)
T COG3319 1 PPLFCFHPAGGSVLAYAPLAAALGPL-LPVYGLQAPGYGAGEQPF---ASLDDMAAAYVAAIRRVQPEGPYVLLGWSLGG 76 (257)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhccC-ceeeccccCccccccccc---CCHHHHHHHHHHHHHHhCCCCCEEEEeecccc
Confidence 68999999999999999999999866 999999999998633322 59999999999999888677899999999999
Q ss_pred HHHHHHHhhC---ccceeeeeeeeccCC
Q 024134 97 LSVALAADKF---PHKISVAIFLTAFMP 121 (272)
Q Consensus 97 ~~a~~~a~~~---p~~v~~lvl~~~~~~ 121 (272)
.+|+..|.+. .+.|..++++++..+
T Consensus 77 ~vA~evA~qL~~~G~~Va~L~llD~~~~ 104 (257)
T COG3319 77 AVAFEVAAQLEAQGEEVAFLGLLDAVPP 104 (257)
T ss_pred HHHHHHHHHHHhCCCeEEEEEEeccCCC
Confidence 9999999763 457999999998755
No 106
>TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family. Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae
Probab=99.59 E-value=8.9e-15 Score=120.99 Aligned_cols=90 Identities=22% Similarity=0.188 Sum_probs=75.5
Q ss_pred CCeEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCCCCCCCCcc---------ccc-------------ccchhhchHH
Q 024134 16 QKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKK---------IQD-------------VRSFYEYNEP 73 (272)
Q Consensus 16 ~~~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~---------~~~-------------~~~~~~~~~~ 73 (272)
.|+|||+||++++...|..+++.|+++||+|+++|+||||.|... ... ..++++.+.|
T Consensus 449 ~P~VVllHG~~g~~~~~~~lA~~La~~Gy~VIaiDlpGHG~S~~~~~~~~~~a~~~~~~~y~Nl~~l~~aRDn~rQ~v~D 528 (792)
T TIGR03502 449 WPVVIYQHGITGAKENALAFAGTLAAAGVATIAIDHPLHGARSFDANASGVNATNANVLAYMNLASLLVARDNLRQSILD 528 (792)
T ss_pred CcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEeCCCCCCccccccccccccccccCccceeccccccccccCHHHHHHH
Confidence 468999999999999999999999989999999999999999443 110 1267888899
Q ss_pred HHHHHHHhc---------------CCCcEEEEEeCcchHHHHHHHhh
Q 024134 74 LLEILASLS---------------ADEKVILVGHSFGGLSVALAADK 105 (272)
Q Consensus 74 ~~~~i~~l~---------------~~~~~~lvG~S~Gg~~a~~~a~~ 105 (272)
+..+...+. +..+++++||||||.++..++..
T Consensus 529 ll~L~~~l~~~~~~~~~~~~~~~~~~~~V~~lGHSLGgiig~~~~~~ 575 (792)
T TIGR03502 529 LLGLRLSLNGSALAGAPLSGINVIDGSKVSFLGHSLGGIVGTSFIAY 575 (792)
T ss_pred HHHHHHHHhcccccccccccccCCCCCcEEEEecCHHHHHHHHHHHh
Confidence 888888772 13589999999999999999965
No 107
>PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases. Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B.
Probab=99.58 E-value=5.4e-14 Score=98.29 Aligned_cols=216 Identities=14% Similarity=0.111 Sum_probs=105.5
Q ss_pred HhhhhhhccCCCeEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCCCC-CCCCcccccccchhhchHHHHHHHHHh--c
Q 024134 6 KVKKMTEAKKQKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAAS-GINMKKIQDVRSFYEYNEPLLEILASL--S 82 (272)
Q Consensus 6 ~~~~~~~~~~~~~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~-G~s~~~~~~~~~~~~~~~~~~~~i~~l--~ 82 (272)
+..+-+.....++||+.+|++...+.|..++.+|+..||+|+.+|.-.| |.|++.... +++....+++..+++.+ .
T Consensus 20 t~P~~~~~~~~~tiliA~Gf~rrmdh~agLA~YL~~NGFhViRyDsl~HvGlSsG~I~e-ftms~g~~sL~~V~dwl~~~ 98 (294)
T PF02273_consen 20 TRPKNNEPKRNNTILIAPGFARRMDHFAGLAEYLSANGFHVIRYDSLNHVGLSSGDINE-FTMSIGKASLLTVIDWLATR 98 (294)
T ss_dssp E---TTS---S-EEEEE-TT-GGGGGGHHHHHHHHTTT--EEEE---B--------------HHHHHHHHHHHHHHHHHT
T ss_pred cCCCCCCcccCCeEEEecchhHHHHHHHHHHHHHhhCCeEEEeccccccccCCCCChhh-cchHHhHHHHHHHHHHHHhc
Confidence 3344333345689999999999999999999999999999999998765 788776654 78888888888888777 4
Q ss_pred CCCcEEEEEeCcchHHHHHHHhhCccceeeeeeeeccCCCCCCCchhhhhhcccCCchhhhhhhhhhccccCCCc-cchh
Q 024134 83 ADEKVILVGHSFGGLSVALAADKFPHKISVAIFLTAFMPDTKHQPSYVVERFSESIPREERLDTQYSIIDESNPS-RMSI 161 (272)
Q Consensus 83 ~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 161 (272)
+..++-|+.-|+.|.+|+..|.+- .+.-+|..-+... ....+++.... .++....... +... ....
T Consensus 99 g~~~~GLIAaSLSaRIAy~Va~~i--~lsfLitaVGVVn-----lr~TLe~al~~----Dyl~~~i~~l--p~dldfeGh 165 (294)
T PF02273_consen 99 GIRRIGLIAASLSARIAYEVAADI--NLSFLITAVGVVN-----LRDTLEKALGY----DYLQLPIEQL--PEDLDFEGH 165 (294)
T ss_dssp T---EEEEEETTHHHHHHHHTTTS----SEEEEES--S------HHHHHHHHHSS-----GGGS-GGG----SEEEETTE
T ss_pred CCCcchhhhhhhhHHHHHHHhhcc--CcceEEEEeeeee-----HHHHHHHHhcc----chhhcchhhC--CCccccccc
Confidence 778899999999999999999743 3666665554422 11111211111 1111000000 0000 0000
Q ss_pred hhh-hhHHHHhhccCCChhHHHHHHHhccCCccchHHhhhcccccccccCCceeEEEEeCCCCCccHHHHHHHHhcC--C
Q 024134 162 LFG-HKFLTLKLYQLSPPEDLELAKMLVKPGLLFTDELSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNN--P 238 (272)
Q Consensus 162 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~--~ 238 (272)
.+. ..++..-+.. ....+.. .....+...+|++.+++++|.++......++...+ +
T Consensus 166 ~l~~~vFv~dc~e~----------------~w~~l~S-----T~~~~k~l~iP~iaF~A~~D~WV~q~eV~~~~~~~~s~ 224 (294)
T PF02273_consen 166 NLGAEVFVTDCFEH----------------GWDDLDS-----TINDMKRLSIPFIAFTANDDDWVKQSEVEELLDNINSN 224 (294)
T ss_dssp EEEHHHHHHHHHHT----------------T-SSHHH-----HHHHHTT--S-EEEEEETT-TTS-HHHHHHHHTT-TT-
T ss_pred ccchHHHHHHHHHc----------------CCccchh-----HHHHHhhCCCCEEEEEeCCCccccHHHHHHHHHhcCCC
Confidence 001 1111111111 1111111 01112334899999999999999998888888755 4
Q ss_pred CceEEEecCCCcccccCCC
Q 024134 239 VNEVMAIKGADHMAMLSKP 257 (272)
Q Consensus 239 ~~~~~~~~~~gH~~~~~~p 257 (272)
.+++..++|++|.+ -|+|
T Consensus 225 ~~klysl~Gs~HdL-~enl 242 (294)
T PF02273_consen 225 KCKLYSLPGSSHDL-GENL 242 (294)
T ss_dssp -EEEEEETT-SS-T-TSSH
T ss_pred ceeEEEecCccchh-hhCh
Confidence 67899999999986 3444
No 108
>PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function.
Probab=99.56 E-value=3.3e-13 Score=100.62 Aligned_cols=241 Identities=16% Similarity=0.140 Sum_probs=133.2
Q ss_pred cCCCeEEEEecCCCcchhHH-hh-HHHHHhCCCeEEEEcCCCCCCCCccccc---ccchhhch----------HHHHHHH
Q 024134 14 KKQKHFVLVHGSNHGAWCWY-KV-KPRLEAAGHRVTAMDLAASGINMKKIQD---VRSFYEYN----------EPLLEIL 78 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~~~-~~-~~~l~~~g~~v~~~d~~G~G~s~~~~~~---~~~~~~~~----------~~~~~~i 78 (272)
..+|.+|.++|.|......+ .+ +..|.++|+..+.+..|-||...+.... ..+..|+. ..+..++
T Consensus 90 ~~rp~~IhLagTGDh~f~rR~~l~a~pLl~~gi~s~~le~Pyyg~RkP~~Q~~s~l~~VsDl~~~g~~~i~E~~~Ll~Wl 169 (348)
T PF09752_consen 90 PYRPVCIHLAGTGDHGFWRRRRLMARPLLKEGIASLILENPYYGQRKPKDQRRSSLRNVSDLFVMGRATILESRALLHWL 169 (348)
T ss_pred CCCceEEEecCCCccchhhhhhhhhhHHHHcCcceEEEecccccccChhHhhcccccchhHHHHHHhHHHHHHHHHHHHH
Confidence 45788899999887665543 33 6778888999999999999987654431 11222221 2234444
Q ss_pred HHhcCCCcEEEEEeCcchHHHHHHHhhCccceeeeeeeeccCCCCCCCchhhhhhcccCCchhhhhhhhhhccccCCCc-
Q 024134 79 ASLSADEKVILVGHSFGGLSVALAADKFPHKISVAIFLTAFMPDTKHQPSYVVERFSESIPREERLDTQYSIIDESNPS- 157 (272)
Q Consensus 79 ~~l~~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 157 (272)
+.. +..++.+.|.||||.+|..+|...|..+..+-++++........ ...+............ +.........
T Consensus 170 ~~~-G~~~~g~~G~SmGG~~A~laa~~~p~pv~~vp~ls~~sAs~vFt----~Gvls~~i~W~~L~~q-~~~~~~~~~~~ 243 (348)
T PF09752_consen 170 ERE-GYGPLGLTGISMGGHMAALAASNWPRPVALVPCLSWSSASVVFT----EGVLSNSINWDALEKQ-FEDTVYEEEIS 243 (348)
T ss_pred Hhc-CCCceEEEEechhHhhHHhhhhcCCCceeEEEeecccCCCcchh----hhhhhcCCCHHHHHHH-hcccchhhhhc
Confidence 455 77899999999999999999999999877776666543211110 0111111111111111 0000000000
Q ss_pred cchhhhhhhHHHHhhccCCChhHHHHHHHhccCCccchHHhhhcccccccccCCceeEEEEeCCCCCccHHHHHHHHhcC
Q 024134 158 RMSILFGHKFLTLKLYQLSPPEDLELAKMLVKPGLLFTDELSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNN 237 (272)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~ 237 (272)
..............-......+........+ ..+.....+.... -.-.+.++.+++|.++|......+.+..
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~Ea~~~m~~~m-------d~~T~l~nf~~P~-dp~~ii~V~A~~DaYVPr~~v~~Lq~~W 315 (348)
T PF09752_consen 244 DIPAQNKSLPLDSMEERRRDREALRFMRGVM-------DSFTHLTNFPVPV-DPSAIIFVAAKNDAYVPRHGVLSLQEIW 315 (348)
T ss_pred ccccCcccccchhhccccchHHHHHHHHHHH-------HhhccccccCCCC-CCCcEEEEEecCceEechhhcchHHHhC
Confidence 0000000000000000000111111111110 1111111111111 1335889999999999998888999999
Q ss_pred CCceEEEecCCCcc-cccCCCchHHHHHHHHHH
Q 024134 238 PVNEVMAIKGADHM-AMLSKPQPLSDCFSQIAH 269 (272)
Q Consensus 238 ~~~~~~~~~~~gH~-~~~~~p~~~~~~i~~fl~ 269 (272)
|++++..++ +||. .++-+.+.+.++|.+-++
T Consensus 316 PGsEvR~l~-gGHVsA~L~~q~~fR~AI~Daf~ 347 (348)
T PF09752_consen 316 PGSEVRYLP-GGHVSAYLLHQEAFRQAIYDAFE 347 (348)
T ss_pred CCCeEEEec-CCcEEEeeechHHHHHHHHHHhh
Confidence 999999999 5996 455677888888887665
No 109
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=99.56 E-value=2e-13 Score=98.97 Aligned_cols=94 Identities=22% Similarity=0.274 Sum_probs=62.8
Q ss_pred EEEEecCCC---cchhHHhhHHHHHh-CCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHh--------cCCCc
Q 024134 19 FVLVHGSNH---GAWCWYKVKPRLEA-AGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASL--------SADEK 86 (272)
Q Consensus 19 vv~lhG~~~---~~~~~~~~~~~l~~-~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l--------~~~~~ 86 (272)
||++||.+. +......++..+++ .|+.|+.+|+|=... .++.+..+|+.+.++.+ .+.++
T Consensus 1 v~~~HGGg~~~g~~~~~~~~~~~la~~~g~~v~~~~Yrl~p~--------~~~p~~~~D~~~a~~~l~~~~~~~~~d~~~ 72 (211)
T PF07859_consen 1 VVYIHGGGWVMGSKESHWPFAARLAAERGFVVVSIDYRLAPE--------APFPAALEDVKAAYRWLLKNADKLGIDPER 72 (211)
T ss_dssp EEEE--STTTSCGTTTHHHHHHHHHHHHTSEEEEEE---TTT--------SSTTHHHHHHHHHHHHHHHTHHHHTEEEEE
T ss_pred CEEECCcccccCChHHHHHHHHHHHhhccEEEEEeecccccc--------ccccccccccccceeeeccccccccccccc
Confidence 799999873 33445666777765 899999999994322 23444444444444433 14678
Q ss_pred EEEEEeCcchHHHHHHHhhCcc----ceeeeeeeeccC
Q 024134 87 VILVGHSFGGLSVALAADKFPH----KISVAIFLTAFM 120 (272)
Q Consensus 87 ~~lvG~S~Gg~~a~~~a~~~p~----~v~~lvl~~~~~ 120 (272)
++++|+|.||.+++.++....+ .++++++++|..
T Consensus 73 i~l~G~SAGg~la~~~~~~~~~~~~~~~~~~~~~~p~~ 110 (211)
T PF07859_consen 73 IVLIGDSAGGHLALSLALRARDRGLPKPKGIILISPWT 110 (211)
T ss_dssp EEEEEETHHHHHHHHHHHHHHHTTTCHESEEEEESCHS
T ss_pred eEEeecccccchhhhhhhhhhhhcccchhhhhcccccc
Confidence 9999999999999999976544 389999999864
No 110
>COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only]
Probab=99.55 E-value=5.2e-13 Score=88.91 Aligned_cols=173 Identities=13% Similarity=0.112 Sum_probs=112.5
Q ss_pred CCeEEEEecCCCcchh-HHhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcCCCcEEEEEeCc
Q 024134 16 QKHFVLVHGSNHGAWC-WYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSADEKVILVGHSF 94 (272)
Q Consensus 16 ~~~vv~lhG~~~~~~~-~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~lvG~S~ 94 (272)
.+.+|++||+.+|+.. |....+. +--.+-.+++. .-.....+++++.+.+.+... .++++||+||+
T Consensus 2 ~~~~lIVpG~~~Sg~~HWq~~we~---~l~~a~rveq~--------~w~~P~~~dWi~~l~~~v~a~--~~~~vlVAHSL 68 (181)
T COG3545 2 MTDVLIVPGYGGSGPNHWQSRWES---ALPNARRVEQD--------DWEAPVLDDWIARLEKEVNAA--EGPVVLVAHSL 68 (181)
T ss_pred CceEEEecCCCCCChhHHHHHHHh---hCccchhcccC--------CCCCCCHHHHHHHHHHHHhcc--CCCeEEEEecc
Confidence 3579999999877743 6443321 11112223322 111247788888888888776 36699999999
Q ss_pred chHHHHHHHhhCccceeeeeeeeccCCCCCCCchhhhhhcccCCchhhhhhhhhhccccCCCccchhhhhhhHHHHhhcc
Q 024134 95 GGLSVALAADKFPHKISVAIFLTAFMPDTKHQPSYVVERFSESIPREERLDTQYSIIDESNPSRMSILFGHKFLTLKLYQ 174 (272)
Q Consensus 95 Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (272)
|+..++.++.+....|.|++|++|+......... .. .
T Consensus 69 Gc~~v~h~~~~~~~~V~GalLVAppd~~~~~~~~----~~-------------~-------------------------- 105 (181)
T COG3545 69 GCATVAHWAEHIQRQVAGALLVAPPDVSRPEIRP----KH-------------L-------------------------- 105 (181)
T ss_pred cHHHHHHHHHhhhhccceEEEecCCCccccccch----hh-------------c--------------------------
Confidence 9999999999888899999999987332110000 00 0
Q ss_pred CCChhHHHHHHHhccCCccchHHhhhcccccccccCCceeEEEEeCCCCCccHHHHHHHHhcCCCceEEEecCCCccccc
Q 024134 175 LSPPEDLELAKMLVKPGLLFTDELSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNNPVNEVMAIKGADHMAML 254 (272)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~ 254 (272)
......... ...-|.+++.+.+|++++.+.++.+++.+ ++.++.+.++||.--.
T Consensus 106 ------------------------~tf~~~p~~-~lpfps~vvaSrnDp~~~~~~a~~~a~~w-gs~lv~~g~~GHiN~~ 159 (181)
T COG3545 106 ------------------------MTFDPIPRE-PLPFPSVVVASRNDPYVSYEHAEDLANAW-GSALVDVGEGGHINAE 159 (181)
T ss_pred ------------------------cccCCCccc-cCCCceeEEEecCCCCCCHHHHHHHHHhc-cHhheecccccccchh
Confidence 000000000 11568999999999999999999999988 5688888889998543
Q ss_pred C---CCchHHHHHHHHHHh
Q 024134 255 S---KPQPLSDCFSQIAHK 270 (272)
Q Consensus 255 ~---~p~~~~~~i~~fl~~ 270 (272)
+ .-.+....+.+|+.+
T Consensus 160 sG~g~wpeg~~~l~~~~s~ 178 (181)
T COG3545 160 SGFGPWPEGYALLAQLLSR 178 (181)
T ss_pred hcCCCcHHHHHHHHHHhhh
Confidence 2 224455666666543
No 111
>COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.54 E-value=1.7e-13 Score=97.35 Aligned_cols=209 Identities=18% Similarity=0.096 Sum_probs=130.6
Q ss_pred cCCCeEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCCCCCCCCc----ccc----------------cccchhhchHH
Q 024134 14 KKQKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMK----KIQ----------------DVRSFYEYNEP 73 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~----~~~----------------~~~~~~~~~~~ 73 (272)
+.-|.||-.||.+++...|..+... +..||.|+..|.||.|.|+. ++. +.+-+.....|
T Consensus 81 ~~~P~vV~fhGY~g~~g~~~~~l~w-a~~Gyavf~MdvRGQg~~~~dt~~~p~~~s~pG~mtrGilD~kd~yyyr~v~~D 159 (321)
T COG3458 81 GKLPAVVQFHGYGGRGGEWHDMLHW-AVAGYAVFVMDVRGQGSSSQDTADPPGGPSDPGFMTRGILDRKDTYYYRGVFLD 159 (321)
T ss_pred CccceEEEEeeccCCCCCccccccc-cccceeEEEEecccCCCccccCCCCCCCCcCCceeEeecccCCCceEEeeehHH
Confidence 4568999999999999888776653 34799999999999998843 111 11223344556
Q ss_pred HHHHHHHh-----cCCCcEEEEEeCcchHHHHHHHhhCccceeeeeeeeccCCCCCCCchhhhhhcccCCchhhhhhhhh
Q 024134 74 LLEILASL-----SADEKVILVGHSFGGLSVALAADKFPHKISVAIFLTAFMPDTKHQPSYVVERFSESIPREERLDTQY 148 (272)
Q Consensus 74 ~~~~i~~l-----~~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (272)
+..+++.+ -..+++.+.|.|.||.+++.+++..| +++++++.-|+........ .... ....
T Consensus 160 ~~~ave~~~sl~~vde~Ri~v~G~SqGGglalaaaal~~-rik~~~~~~Pfl~df~r~i--------~~~~-~~~y---- 225 (321)
T COG3458 160 AVRAVEILASLDEVDEERIGVTGGSQGGGLALAAAALDP-RIKAVVADYPFLSDFPRAI--------ELAT-EGPY---- 225 (321)
T ss_pred HHHHHHHHhccCccchhheEEeccccCchhhhhhhhcCh-hhhcccccccccccchhhe--------eecc-cCcH----
Confidence 66666554 14578999999999999999997765 7999998888754332111 0000 0000
Q ss_pred hccccCCCccchhhhhhhHHHHhhccCCChhHHHHHHHhccCCccchHHhhhcccccccccCCceeEEEEeCCCCCccHH
Q 024134 149 SIIDESNPSRMSILFGHKFLTLKLYQLSPPEDLELAKMLVKPGLLFTDELSKANEFSNEGYGSVKRDFVGSDKDNCIPKE 228 (272)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~ 228 (272)
..+...+....+. ..+. ...++..+......++++|+|+..|-.|+++||.
T Consensus 226 -----------------dei~~y~k~h~~~-e~~v-----------~~TL~yfD~~n~A~RiK~pvL~svgL~D~vcpPs 276 (321)
T COG3458 226 -----------------DEIQTYFKRHDPK-EAEV-----------FETLSYFDIVNLAARIKVPVLMSVGLMDPVCPPS 276 (321)
T ss_pred -----------------HHHHHHHHhcCch-HHHH-----------HHHHhhhhhhhHHHhhccceEEeecccCCCCCCh
Confidence 0011111111111 1111 1122222333334556999999999999999999
Q ss_pred HHHHHHhcCCC-ceEEEecCCCcccccCCCchHHHHHHHHHH
Q 024134 229 FQQWMIQNNPV-NEVMAIKGADHMAMLSKPQPLSDCFSQIAH 269 (272)
Q Consensus 229 ~~~~~~~~~~~-~~~~~~~~~gH~~~~~~p~~~~~~i~~fl~ 269 (272)
.+-.....++. .++.+++.-+|.- -|.-..+.+..|++
T Consensus 277 tqFA~yN~l~~~K~i~iy~~~aHe~---~p~~~~~~~~~~l~ 315 (321)
T COG3458 277 TQFAAYNALTTSKTIEIYPYFAHEG---GPGFQSRQQVHFLK 315 (321)
T ss_pred hhHHHhhcccCCceEEEeecccccc---CcchhHHHHHHHHH
Confidence 98888888764 5677788666754 34344445555654
No 112
>COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism]
Probab=99.54 E-value=1.5e-13 Score=103.83 Aligned_cols=231 Identities=13% Similarity=0.116 Sum_probs=134.8
Q ss_pred CCCeEEEEecCCCcchhH-----HhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhch-HHHHHHHHHh---cCCC
Q 024134 15 KQKHFVLVHGSNHGAWCW-----YKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYN-EPLLEILASL---SADE 85 (272)
Q Consensus 15 ~~~~vv~lhG~~~~~~~~-----~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~-~~~~~~i~~l---~~~~ 85 (272)
.++|++++|.+-.....| ..++..|.++|..|+.+++++-..+.. ..++++++ +.+.+.++.. .+.+
T Consensus 106 ~~~PlLiVpP~iNk~yi~Dl~~~~s~V~~l~~~g~~vfvIsw~nPd~~~~----~~~~edYi~e~l~~aid~v~~itg~~ 181 (445)
T COG3243 106 LKRPLLIVPPWINKFYILDLSPEKSLVRWLLEQGLDVFVISWRNPDASLA----AKNLEDYILEGLSEAIDTVKDITGQK 181 (445)
T ss_pred CCCceEeeccccCceeEEeCCCCccHHHHHHHcCCceEEEeccCchHhhh----hccHHHHHHHHHHHHHHHHHHHhCcc
Confidence 457999999987776666 367888999999999999987666544 24666666 4444444333 2779
Q ss_pred cEEEEEeCcchHHHHHHHhhCccc-eeeeeeeeccCCCCCCCchh------hhhhcccCCc-----hhhhhhhhhhcccc
Q 024134 86 KVILVGHSFGGLSVALAADKFPHK-ISVAIFLTAFMPDTKHQPSY------VVERFSESIP-----REERLDTQYSIIDE 153 (272)
Q Consensus 86 ~~~lvG~S~Gg~~a~~~a~~~p~~-v~~lvl~~~~~~~~~~~~~~------~~~~~~~~~~-----~~~~~~~~~~~~~~ 153 (272)
++.++|+|.||++...+++.++.+ |++++++.+........... ....+..... ....+...|.....
T Consensus 182 ~InliGyCvGGtl~~~ala~~~~k~I~S~T~lts~~DF~~~g~l~if~n~~~~~~~~~~i~~~g~lpg~~ma~~F~mLrp 261 (445)
T COG3243 182 DINLIGYCVGGTLLAAALALMAAKRIKSLTLLTSPVDFSHAGDLGIFANEATIEALDADIVQKGILPGWYMAIVFFLLRP 261 (445)
T ss_pred ccceeeEecchHHHHHHHHhhhhcccccceeeecchhhccccccccccCHHHHHHHHhhhhhccCCChHHHHHHHHhcCc
Confidence 999999999999999999998887 99999888764333211111 0111111100 01111111111110
Q ss_pred CCCccchhhhhhhHHHHhhccCCChh-----------------HHHHHHHhccCCccchHHhhhcccccccccCCceeEE
Q 024134 154 SNPSRMSILFGHKFLTLKLYQLSPPE-----------------DLELAKMLVKPGLLFTDELSKANEFSNEGYGSVKRDF 216 (272)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~ 216 (272)
... .-..++..+.....+.. ...+.+.++.........+.-....-++..|+||+++
T Consensus 262 ndl------iw~~fV~nyl~ge~pl~fdllyWn~dst~~~~~~~~~~Lrn~y~~N~l~~g~~~v~G~~VdL~~It~pvy~ 335 (445)
T COG3243 262 NDL------IWNYFVNNYLDGEQPLPFDLLYWNADSTRLPGAAHSEYLRNFYLENRLIRGGLEVSGTMVDLGDITCPVYN 335 (445)
T ss_pred ccc------chHHHHHHhcCCCCCCchhHHHhhCCCccCchHHHHHHHHHHHHhChhhccceEECCEEechhhcccceEE
Confidence 000 00112222211111111 1111212222211111112222233456788999999
Q ss_pred EEeCCCCCccHHHHHHHHhcCCC-ceEEEecCCCcccccCC
Q 024134 217 VGSDKDNCIPKEFQQWMIQNNPV-NEVMAIKGADHMAMLSK 256 (272)
Q Consensus 217 i~g~~D~~~~~~~~~~~~~~~~~-~~~~~~~~~gH~~~~~~ 256 (272)
+.|++|.+.|.+......+.+++ ++++... +||....-+
T Consensus 336 ~a~~~DhI~P~~Sv~~g~~l~~g~~~f~l~~-sGHIa~vVN 375 (445)
T COG3243 336 LAAEEDHIAPWSSVYLGARLLGGEVTFVLSR-SGHIAGVVN 375 (445)
T ss_pred EeecccccCCHHHHHHHHHhcCCceEEEEec-CceEEEEeC
Confidence 99999999999999999998887 4555555 999876544
No 113
>PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=99.53 E-value=7.3e-13 Score=95.59 Aligned_cols=106 Identities=25% Similarity=0.152 Sum_probs=76.5
Q ss_pred cCCCeEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHH-h-----cCCCcE
Q 024134 14 KKQKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILAS-L-----SADEKV 87 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~-l-----~~~~~~ 87 (272)
+.=|.+||+||+......|..+.+++++.||-|+.+|+...+.... ..+.....+.++.+.+=++. + .+..++
T Consensus 15 g~yPVv~f~~G~~~~~s~Ys~ll~hvAShGyIVV~~d~~~~~~~~~-~~~~~~~~~vi~Wl~~~L~~~l~~~v~~D~s~l 93 (259)
T PF12740_consen 15 GTYPVVLFLHGFLLINSWYSQLLEHVASHGYIVVAPDLYSIGGPDD-TDEVASAAEVIDWLAKGLESKLPLGVKPDFSKL 93 (259)
T ss_pred CCcCEEEEeCCcCCCHHHHHHHHHHHHhCceEEEEecccccCCCCc-chhHHHHHHHHHHHHhcchhhccccccccccce
Confidence 5568999999999888889999999999999999999665433211 11111222333322221111 1 145689
Q ss_pred EEEEeCcchHHHHHHHhhC-----ccceeeeeeeeccC
Q 024134 88 ILVGHSFGGLSVALAADKF-----PHKISVAIFLTAFM 120 (272)
Q Consensus 88 ~lvG~S~Gg~~a~~~a~~~-----p~~v~~lvl~~~~~ 120 (272)
.|.|||-||-++..++..+ +.+++++|+++|..
T Consensus 94 ~l~GHSrGGk~Af~~al~~~~~~~~~~~~ali~lDPVd 131 (259)
T PF12740_consen 94 ALAGHSRGGKVAFAMALGNASSSLDLRFSALILLDPVD 131 (259)
T ss_pred EEeeeCCCCHHHHHHHhhhcccccccceeEEEEecccc
Confidence 9999999999999999887 56899999999974
No 114
>PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional
Probab=99.52 E-value=7e-13 Score=111.68 Aligned_cols=218 Identities=11% Similarity=-0.025 Sum_probs=117.9
Q ss_pred hHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhc-------------------CCCcEEEEEeCcc
Q 024134 35 VKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLS-------------------ADEKVILVGHSFG 95 (272)
Q Consensus 35 ~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~-------------------~~~~~~lvG~S~G 95 (272)
+.+.|+++||.|+..|.||.|.|++.... .. .+-.+|..++|+.+. ...+|.++|.|+|
T Consensus 271 ~~~~~~~rGYaVV~~D~RGtg~SeG~~~~-~~-~~E~~D~~~vIeWl~~~~~~~~d~~~~~~~kq~WsnGkVGm~G~SY~ 348 (767)
T PRK05371 271 LNDYFLPRGFAVVYVSGIGTRGSDGCPTT-GD-YQEIESMKAVIDWLNGRATAYTDRTRGKEVKADWSNGKVAMTGKSYL 348 (767)
T ss_pred HHHHHHhCCeEEEEEcCCCCCCCCCcCcc-CC-HHHHHHHHHHHHHHhhCCccccccccccccccCCCCCeeEEEEEcHH
Confidence 45778899999999999999999875432 11 334556666666652 1579999999999
Q ss_pred hHHHHHHHhhCccceeeeeeeeccCCCCCCCchhhhhhcccCCchhhh-------hhhhhhccccCCCccchhhhhhhHH
Q 024134 96 GLSVALAADKFPHKISVAIFLTAFMPDTKHQPSYVVERFSESIPREER-------LDTQYSIIDESNPSRMSILFGHKFL 168 (272)
Q Consensus 96 g~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (272)
|.+++.+|...|..++++|..++...... .....-.......| ....... .. .... .........
T Consensus 349 G~~~~~aAa~~pp~LkAIVp~a~is~~yd-----~yr~~G~~~~~~g~~ged~d~l~~~~~~-r~-~~~~-~~~~~~~~~ 420 (767)
T PRK05371 349 GTLPNAVATTGVEGLETIIPEAAISSWYD-----YYRENGLVRAPGGYQGEDLDVLAELTYS-RN-LLAG-DYLRHNEAC 420 (767)
T ss_pred HHHHHHHHhhCCCcceEEEeeCCCCcHHH-----HhhcCCceeccCCcCCcchhhHHHHhhh-cc-cCcc-hhhcchHHH
Confidence 99999999999999999998776532110 00000000000000 0000000 00 0000 000000000
Q ss_pred HHhhccCCChhHHHHHHHhccCCccchHHhhhcccccccccCCceeEEEEeCCCCCccHHHHHHHHhcCC----CceEEE
Q 024134 169 TLKLYQLSPPEDLELAKMLVKPGLLFTDELSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNNP----VNEVMA 244 (272)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~----~~~~~~ 244 (272)
..... .......+....+..-+...........+++|+|+|+|..|..+++..+.++.+.+. ..++.+
T Consensus 421 ~~~~~--------~~~~~~~~~~~~y~~fW~~rn~~~~~~kIkvPvLlIhGw~D~~V~~~~s~~ly~aL~~~g~pkkL~l 492 (767)
T PRK05371 421 EKLLA--------ELTAAQDRKTGDYNDFWDDRNYLKDADKIKASVLVVHGLNDWNVKPKQVYQWWDALPENGVPKKLFL 492 (767)
T ss_pred HHHHh--------hhhhhhhhcCCCccHHHHhCCHhhHhhCCCCCEEEEeeCCCCCCChHHHHHHHHHHHhcCCCeEEEE
Confidence 00000 000000000001111122233334456779999999999999999776655555442 345655
Q ss_pred ecCCCccccc-CCCchHHHHHHHHHHhh
Q 024134 245 IKGADHMAML-SKPQPLSDCFSQIAHKY 271 (272)
Q Consensus 245 ~~~~gH~~~~-~~p~~~~~~i~~fl~~~ 271 (272)
.+ ++|.... ..+.++.+.+.+|++++
T Consensus 493 ~~-g~H~~~~~~~~~d~~e~~~~Wfd~~ 519 (767)
T PRK05371 493 HQ-GGHVYPNNWQSIDFRDTMNAWFTHK 519 (767)
T ss_pred eC-CCccCCCchhHHHHHHHHHHHHHhc
Confidence 55 7886443 33456777788888654
No 115
>KOG2624 consensus Triglyceride lipase-cholesterol esterase [Lipid transport and metabolism]
Probab=99.52 E-value=5.9e-13 Score=102.65 Aligned_cols=256 Identities=17% Similarity=0.135 Sum_probs=146.6
Q ss_pred cCCCeEEEEecCCCcchhHH------hhHHHHHhCCCeEEEEcCCCCCCCCccc------c---cccchhhchH-HHHHH
Q 024134 14 KKQKHFVLVHGSNHGAWCWY------KVKPRLEAAGHRVTAMDLAASGINMKKI------Q---DVRSFYEYNE-PLLEI 77 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~~~------~~~~~l~~~g~~v~~~d~~G~G~s~~~~------~---~~~~~~~~~~-~~~~~ 77 (272)
+++|+|++.||+.+++..|- .+.-.|+++||.|+.-+.||-..|.... . -.+++.+++. |+-+.
T Consensus 71 ~~rp~Vll~HGLl~sS~~Wv~n~p~~sLaf~LadaGYDVWLgN~RGn~ySr~h~~l~~~~~~~FW~FS~~Em~~yDLPA~ 150 (403)
T KOG2624|consen 71 KKRPVVLLQHGLLASSSSWVLNGPEQSLAFLLADAGYDVWLGNNRGNTYSRKHKKLSPSSDKEFWDFSWHEMGTYDLPAM 150 (403)
T ss_pred CCCCcEEEeeccccccccceecCccccHHHHHHHcCCceeeecCcCcccchhhcccCCcCCcceeecchhhhhhcCHHHH
Confidence 67899999999999999983 4566688999999999999966553211 1 1246666544 66666
Q ss_pred HHHh---cCCCcEEEEEeCcchHHHHHHHhhCcc---ceeeeeeeeccCCCCCCCchhhhhhcccCC-chhhhhhhhhhc
Q 024134 78 LASL---SADEKVILVGHSFGGLSVALAADKFPH---KISVAIFLTAFMPDTKHQPSYVVERFSESI-PREERLDTQYSI 150 (272)
Q Consensus 78 i~~l---~~~~~~~lvG~S~Gg~~a~~~a~~~p~---~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 150 (272)
|+.+ .+.++++.||||.|+......+...|+ +|+..++++|..... .... ....+.... .........+..
T Consensus 151 IdyIL~~T~~~kl~yvGHSQGtt~~fv~lS~~p~~~~kI~~~~aLAP~~~~k-~~~~-~~~~~~~~~~~~~~~~~~~fg~ 228 (403)
T KOG2624|consen 151 IDYILEKTGQEKLHYVGHSQGTTTFFVMLSERPEYNKKIKSFIALAPAAFPK-HIKS-LLNKFLDPFLGAFSLLPLLFGR 228 (403)
T ss_pred HHHHHHhccccceEEEEEEccchhheehhcccchhhhhhheeeeecchhhhc-cccc-HHHHhhhhhhhhhhHHHHhcCC
Confidence 6655 267899999999999999999988875 799999999986322 1111 001110000 000000000000
Q ss_pred c-------------ccCCC-ccchhhhhhhHHHHh---------------hcc----CCChhHHHHHHHhccCCccc---
Q 024134 151 I-------------DESNP-SRMSILFGHKFLTLK---------------LYQ----LSPPEDLELAKMLVKPGLLF--- 194 (272)
Q Consensus 151 ~-------------~~~~~-~~~~~~~~~~~~~~~---------------~~~----~~~~~~~~~~~~~~~~~~~~--- 194 (272)
. ..... ......+....+... ... ........-+.+..+.....
T Consensus 229 ~~f~p~~~~~~~~~~~~C~~~~~~~~lC~~~~~~~~G~~~~~~n~~~~~~~~~h~pagtSvk~~~H~~Q~~~s~~f~~yD 308 (403)
T KOG2624|consen 229 KEFLPSNLFIKKFARKICSGSKIFADLCSNFLFLLVGWNSNNWNTTLLPVYLAHLPAGTSVKNIVHWAQIVRSGKFRKYD 308 (403)
T ss_pred ccccchhhHHHHHHHHHhcchhHHHHHHHHHHHHHcCcchHhhhhcccchhhccCCCCccHHHHHHHHHHhcCCCccccC
Confidence 0 00000 000000000000000 000 01111122222222221111
Q ss_pred ------hHHh-hhcccccccccCCceeEEEEeCCCCCccHHHHHHHHhcCCCceEEE---ecCCCccccc---CCCchHH
Q 024134 195 ------TDEL-SKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNNPVNEVMA---IKGADHMAML---SKPQPLS 261 (272)
Q Consensus 195 ------~~~~-~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~---~~~~gH~~~~---~~p~~~~ 261 (272)
...+ ....+......+++|+.+.+|++|..+.++....+....+++.... +++-.|+-++ +.++++.
T Consensus 309 ~G~~~N~~~Y~q~~pP~Y~l~~i~~P~~l~~g~~D~l~~~~DV~~~~~~~~~~~~~~~~~~~~ynHlDFi~g~da~~~vy 388 (403)
T KOG2624|consen 309 YGSKRNLKHYGQSTPPEYDLTNIKVPTALYYGDNDWLADPEDVLILLLVLPNSVIKYIVPIPEYNHLDFIWGLDAKEEVY 388 (403)
T ss_pred CCccccHhhcCCCCCCCCCccccccCEEEEecCCcccCCHHHHHHHHHhcccccccccccCCCccceeeeeccCcHHHHH
Confidence 0111 1223334466779999999999999999999998888777664432 7888887443 5578888
Q ss_pred HHHHHHHHhh
Q 024134 262 DCFSQIAHKY 271 (272)
Q Consensus 262 ~~i~~fl~~~ 271 (272)
+.|.+.++.+
T Consensus 389 ~~vi~~~~~~ 398 (403)
T KOG2624|consen 389 DPVIERLRLF 398 (403)
T ss_pred HHHHHHHHhh
Confidence 8888888754
No 116
>KOG2551 consensus Phospholipase/carboxyhydrolase [Amino acid transport and metabolism]
Probab=99.50 E-value=2.9e-12 Score=88.60 Aligned_cols=173 Identities=16% Similarity=0.141 Sum_probs=108.8
Q ss_pred CCCeEEEEecCCCcchhHHh----hHHHHHhCCCeEEEEcCCC------CCCCCc------cc------c----------
Q 024134 15 KQKHFVLVHGSNHGAWCWYK----VKPRLEAAGHRVTAMDLAA------SGINMK------KI------Q---------- 62 (272)
Q Consensus 15 ~~~~vv~lhG~~~~~~~~~~----~~~~l~~~g~~v~~~d~~G------~G~s~~------~~------~---------- 62 (272)
.++-|||+||+-.+...|.. +...|.+. +.++.+|-|- .-.+.. +. .
T Consensus 4 ~k~rvLcLHGfrQsg~~F~~Ktg~~rK~l~k~-~el~f~~aPh~~~~~~~~~~~~~~~~~a~~~~~~~~~~Wf~~n~~~~ 82 (230)
T KOG2551|consen 4 KKLRVLCLHGFRQSGKVFSEKTGSLRKLLKKL-AELVFPDAPHELPKADLPDSEREKKFDAPPDVEQNRYGWFSNNEASF 82 (230)
T ss_pred CCceEEEecchhhccHHHHHHhhhHHHHHHhh-heEEecCCCccCCcccCCcccccccccCCcccccchhhhhccccccc
Confidence 45789999999999988753 44555544 7888887762 111110 00 0
Q ss_pred -cccchhhchHHHHHHHHHhcCCCcE-EEEEeCcchHHHHHHHhhCc------c--ceeeeeeeeccCCCCCCCchhhhh
Q 024134 63 -DVRSFYEYNEPLLEILASLSADEKV-ILVGHSFGGLSVALAADKFP------H--KISVAIFLTAFMPDTKHQPSYVVE 132 (272)
Q Consensus 63 -~~~~~~~~~~~~~~~i~~l~~~~~~-~lvG~S~Gg~~a~~~a~~~p------~--~v~~lvl~~~~~~~~~~~~~~~~~ 132 (272)
.....+.-.+-+.+.+++. .|+ -|+|+|.|+.++..++...+ + .++-+|+++++.....
T Consensus 83 ~~~~~~eesl~yl~~~i~en---GPFDGllGFSQGA~laa~l~~~~~~~~~~~~~P~~kF~v~~SGf~~~~~-------- 151 (230)
T KOG2551|consen 83 TEYFGFEESLEYLEDYIKEN---GPFDGLLGFSQGAALAALLAGLGQKGLPYVKQPPFKFAVFISGFKFPSK-------- 151 (230)
T ss_pred ccccChHHHHHHHHHHHHHh---CCCccccccchhHHHHHHhhcccccCCcccCCCCeEEEEEEecCCCCcc--------
Confidence 0112233344444555543 555 48999999999988887211 1 2566677776532110
Q ss_pred hcccCCchhhhhhhhhhccccCCCccchhhhhhhHHHHhhccCCChhHHHHHHHhccCCccchHHhhhcccccccccCCc
Q 024134 133 RFSESIPREERLDTQYSIIDESNPSRMSILFGHKFLTLKLYQLSPPEDLELAKMLVKPGLLFTDELSKANEFSNEGYGSV 212 (272)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (272)
. +. .....+.+++
T Consensus 152 ~----------------------------------~~---------------------------------~~~~~~~i~~ 164 (230)
T KOG2551|consen 152 K----------------------------------LD---------------------------------ESAYKRPLST 164 (230)
T ss_pred h----------------------------------hh---------------------------------hhhhccCCCC
Confidence 0 00 0000112489
Q ss_pred eeEEEEeCCCCCccHHHHHHHHhcCCCceEEEecCCCcccccCCCchHHHHHHHHHH
Q 024134 213 KRDFVGSDKDNCIPKEFQQWMIQNNPVNEVMAIKGADHMAMLSKPQPLSDCFSQIAH 269 (272)
Q Consensus 213 P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~p~~~~~~i~~fl~ 269 (272)
|.|.|.|+.|.++|...++.+++.+++..+..-+ +||+++..++ ..+.|.+|+.
T Consensus 165 PSLHi~G~~D~iv~~~~s~~L~~~~~~a~vl~Hp-ggH~VP~~~~--~~~~i~~fi~ 218 (230)
T KOG2551|consen 165 PSLHIFGETDTIVPSERSEQLAESFKDATVLEHP-GGHIVPNKAK--YKEKIADFIQ 218 (230)
T ss_pred CeeEEecccceeecchHHHHHHHhcCCCeEEecC-CCccCCCchH--HHHHHHHHHH
Confidence 9999999999999999999999999999666666 8999887664 4444555544
No 117
>PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family. It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A.
Probab=99.50 E-value=3.4e-13 Score=97.08 Aligned_cols=162 Identities=16% Similarity=0.141 Sum_probs=85.0
Q ss_pred CCCeEEEEecCCCcchhHHhhH----HHHHhCCCeEEEEcCCCCC-----CCCc---------ccc-------------c
Q 024134 15 KQKHFVLVHGSNHGAWCWYKVK----PRLEAAGHRVTAMDLAASG-----INMK---------KIQ-------------D 63 (272)
Q Consensus 15 ~~~~vv~lhG~~~~~~~~~~~~----~~l~~~g~~v~~~d~~G~G-----~s~~---------~~~-------------~ 63 (272)
.++.||||||+++++..++... ..|.+.+++++.+|-|--- -... ... .
T Consensus 3 ~k~riLcLHG~~~na~if~~q~~~l~~~l~~~~~ef~f~dgP~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~ 82 (212)
T PF03959_consen 3 RKPRILCLHGYGQNAEIFRQQTSALRKALKKLDFEFVFVDGPHEVPPGPGIEPFSSEAESAFGDPGPFYSWWDPDDDDHE 82 (212)
T ss_dssp ---EEEEE--TT--HHHHHHHTHHHHHHHHHTT-EEEEE--SEE---GGG-SS---HHHHHHHHTT--EESS---S-SGG
T ss_pred CCceEEEeCCCCcCHHHHHHHHHHHHHHHhhCcEEEEEecCCcccCCcccccccccccccccCCCCcceeeeecCCCccc
Confidence 4678999999999999986544 4454326899888755211 1100 000 0
Q ss_pred ccchhhchHHHHHHHHHhcCCCc-EEEEEeCcchHHHHHHHhhCc--------cceeeeeeeeccCCCCCCCchhhhhhc
Q 024134 64 VRSFYEYNEPLLEILASLSADEK-VILVGHSFGGLSVALAADKFP--------HKISVAIFLTAFMPDTKHQPSYVVERF 134 (272)
Q Consensus 64 ~~~~~~~~~~~~~~i~~l~~~~~-~~lvG~S~Gg~~a~~~a~~~p--------~~v~~lvl~~~~~~~~~~~~~~~~~~~ 134 (272)
...+++..+.+.+.++.. .+ ..|+|+|.||.+|..++.... ..++-+|+++++.+....
T Consensus 83 ~~~~~~sl~~l~~~i~~~---GPfdGvlGFSQGA~lAa~ll~~~~~~~~~~~~~~~kf~V~~sg~~p~~~~--------- 150 (212)
T PF03959_consen 83 YEGLDESLDYLRDYIEEN---GPFDGVLGFSQGAALAALLLALQQRGRPDGAHPPFKFAVFISGFPPPDPD--------- 150 (212)
T ss_dssp G---HHHHHHHHHHHHHH------SEEEEETHHHHHHHHHHHHHHHHST--T----SEEEEES----EEE----------
T ss_pred ccCHHHHHHHHHHHHHhc---CCeEEEEeecHHHHHHHHHHHHHHhhcccccCCCceEEEEEcccCCCchh---------
Confidence 123344444555555554 44 569999999999988885421 246788888876431100
Q ss_pred ccCCchhhhhhhhhhccccCCCccchhhhhhhHHHHhhccCCChhHHHHHHHhccCCccchHHhhhcccccccccCCcee
Q 024134 135 SESIPREERLDTQYSIIDESNPSRMSILFGHKFLTLKLYQLSPPEDLELAKMLVKPGLLFTDELSKANEFSNEGYGSVKR 214 (272)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~ 214 (272)
. .. ......+++|+
T Consensus 151 -----------------------------------------------------~-------~~------~~~~~~i~iPt 164 (212)
T PF03959_consen 151 -----------------------------------------------------Y-------QE------LYDEPKISIPT 164 (212)
T ss_dssp -----------------------------------------------------G-------TT------TT--TT---EE
T ss_pred -----------------------------------------------------h-------hh------hhccccCCCCe
Confidence 0 00 00122248999
Q ss_pred EEEEeCCCCCccHHHHHHHHhcCCC-ceEEEecCCCcccccC
Q 024134 215 DFVGSDKDNCIPKEFQQWMIQNNPV-NEVMAIKGADHMAMLS 255 (272)
Q Consensus 215 l~i~g~~D~~~~~~~~~~~~~~~~~-~~~~~~~~~gH~~~~~ 255 (272)
|.|+|++|.+++++..+.+.+.+.+ .+++..+ +||.++..
T Consensus 165 lHv~G~~D~~~~~~~s~~L~~~~~~~~~v~~h~-gGH~vP~~ 205 (212)
T PF03959_consen 165 LHVIGENDPVVPPERSEALAEMFDPDARVIEHD-GGHHVPRK 205 (212)
T ss_dssp EEEEETT-SSS-HHHHHHHHHHHHHHEEEEEES-SSSS----
T ss_pred EEEEeCCCCCcchHHHHHHHHhccCCcEEEEEC-CCCcCcCC
Confidence 9999999999999999999988876 7777777 89988765
No 118
>KOG3975 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.50 E-value=7e-12 Score=88.00 Aligned_cols=244 Identities=14% Similarity=0.194 Sum_probs=144.7
Q ss_pred cCCCeEEEEecCCCcchhHHhhHHHHHhC---CCeEEEEcCCCCCCCCc--------ccccccchhhchHHHHHHHHHh-
Q 024134 14 KKQKHFVLVHGSNHGAWCWYKVKPRLEAA---GHRVTAMDLAASGINMK--------KIQDVRSFYEYNEPLLEILASL- 81 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~~~~~~~~l~~~---g~~v~~~d~~G~G~s~~--------~~~~~~~~~~~~~~~~~~i~~l- 81 (272)
.+++.+++++|.++....|.+++..|... -..++.+...||-.-+. ...+.++++++++.-.++++..
T Consensus 27 ~~~~li~~IpGNPG~~gFY~~F~~~L~~~l~~r~~~wtIsh~~H~~~P~sl~~~~s~~~~eifsL~~QV~HKlaFik~~~ 106 (301)
T KOG3975|consen 27 EDKPLIVWIPGNPGLLGFYTEFARHLHLNLIDRLPVWTISHAGHALMPASLREDHSHTNEEIFSLQDQVDHKLAFIKEYV 106 (301)
T ss_pred CCceEEEEecCCCCchhHHHHHHHHHHHhcccccceeEEeccccccCCcccccccccccccccchhhHHHHHHHHHHHhC
Confidence 46788999999999999999999888643 15589988888865431 1224578899999888888876
Q ss_pred cCCCcEEEEEeCcchHHHHHHHhhCc--cceeeeeeeeccCCCCCCCch-hhhhhcccCCchhhhhhhhhhccccCCCcc
Q 024134 82 SADEKVILVGHSFGGLSVALAADKFP--HKISVAIFLTAFMPDTKHQPS-YVVERFSESIPREERLDTQYSIIDESNPSR 158 (272)
Q Consensus 82 ~~~~~~~lvG~S~Gg~~a~~~a~~~p--~~v~~lvl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (272)
....+++++|||.|+.+.+....... -.|.+.+++-|..-....++. ............-.++....
T Consensus 107 Pk~~ki~iiGHSiGaYm~Lqil~~~k~~~~vqKa~~LFPTIerM~eSpnG~~~t~~l~~~~hv~~lt~yi---------- 176 (301)
T KOG3975|consen 107 PKDRKIYIIGHSIGAYMVLQILPSIKLVFSVQKAVLLFPTIERMHESPNGIRLTKVLRYLPHVVSLTSYI---------- 176 (301)
T ss_pred CCCCEEEEEecchhHHHHHHHhhhcccccceEEEEEecchHHHHhcCCCceEeeeeeeeehhhhheeeee----------
Confidence 56789999999999999999986432 358888888886533322221 11112211111111111111
Q ss_pred chhhhhhhHHHHhh-----ccCCChhH-HHHHHHhccC----C--ccchHHhhhcccc--cccccCCceeEEEEeCCCCC
Q 024134 159 MSILFGHKFLTLKL-----YQLSPPED-LELAKMLVKP----G--LLFTDELSKANEF--SNEGYGSVKRDFVGSDKDNC 224 (272)
Q Consensus 159 ~~~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~~~~----~--~~~~~~~~~~~~~--~~~~~~~~P~l~i~g~~D~~ 224 (272)
...+.+.+.+..+ .....+.. ......+..+ . ....+.+...... ...+.-.+-+.+.+|..|.+
T Consensus 177 -~~~~lp~~ir~~Li~~~l~~~n~p~e~l~tal~l~h~~v~rn~v~la~qEm~eV~~~d~e~~een~d~l~Fyygt~DgW 255 (301)
T KOG3975|consen 177 -YWILLPGFIRFILIKFMLCGSNGPQEFLSTALFLTHPQVVRNSVGLAAQEMEEVTTRDIEYCEENLDSLWFYYGTNDGW 255 (301)
T ss_pred -eeecChHHHHHHHHHHhcccCCCcHHHHhhHHHhhcHHHHHHHhhhchHHHHHHHHhHHHHHHhcCcEEEEEccCCCCC
Confidence 0111122222111 11111110 0000000000 0 0000111111100 00111256789999999999
Q ss_pred ccHHHHHHHHhcCCCceEEE-ecCCCcccccCCCchHHHHHHHHH
Q 024134 225 IPKEFQQWMIQNNPVNEVMA-IKGADHMAMLSKPQPLSDCFSQIA 268 (272)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~-~~~~gH~~~~~~p~~~~~~i~~fl 268 (272)
+|......+++.+|..++.. .++..|.+...+.+..++.+.+.+
T Consensus 256 ~p~~~~d~~kdd~~eed~~Ldedki~HAFV~~~~q~ma~~v~d~~ 300 (301)
T KOG3975|consen 256 VPSHYYDYYKDDVPEEDLKLDEDKIPHAFVVKHAQYMANAVFDMI 300 (301)
T ss_pred cchHHHHHHhhhcchhceeeccccCCcceeecccHHHHHHHHHhh
Confidence 99999999999998654433 268999999999999998888765
No 119
>PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively []. It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A ....
Probab=99.48 E-value=3.4e-12 Score=95.94 Aligned_cols=106 Identities=13% Similarity=0.138 Sum_probs=73.1
Q ss_pred cCCCeEEEEecCCCcchh-HH--h-------hHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhc-
Q 024134 14 KKQKHFVLVHGSNHGAWC-WY--K-------VKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLS- 82 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~-~~--~-------~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~- 82 (272)
+.-|+||..|+.+.+... .. . ....++++||.|+..|.||.|.|++..... ..+-++|..++|+-+.
T Consensus 18 ~~~P~il~~tpY~~~~~~~~~~~~~~~~~~~~~~~~~~~GY~vV~~D~RG~g~S~G~~~~~--~~~e~~D~~d~I~W~~~ 95 (272)
T PF02129_consen 18 GPFPVILTRTPYGKGDQTASDLAGANPGPPSARRPFAERGYAVVVQDVRGTGGSEGEFDPM--SPNEAQDGYDTIEWIAA 95 (272)
T ss_dssp SSEEEEEEEESSTCTC-HHHHHHTTCHHSHGGGHHHHHTT-EEEEEE-TTSTTS-S-B-TT--SHHHHHHHHHHHHHHHH
T ss_pred CcccEEEEccCcCCCCCcccchhhhhcccchhHHHHHhCCCEEEEECCcccccCCCccccC--ChhHHHHHHHHHHHHHh
Confidence 556899999999865411 11 1 112388999999999999999998866431 4445556555555551
Q ss_pred ---CCCcEEEEEeCcchHHHHHHHhhCccceeeeeeeeccCC
Q 024134 83 ---ADEKVILVGHSFGGLSVALAADKFPHKISVAIFLTAFMP 121 (272)
Q Consensus 83 ---~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~ 121 (272)
...+|.++|.|++|..++.+|...|..+++++...+...
T Consensus 96 Qpws~G~VGm~G~SY~G~~q~~~A~~~~p~LkAi~p~~~~~d 137 (272)
T PF02129_consen 96 QPWSNGKVGMYGISYGGFTQWAAAARRPPHLKAIVPQSGWSD 137 (272)
T ss_dssp CTTEEEEEEEEEETHHHHHHHHHHTTT-TTEEEEEEESE-SB
T ss_pred CCCCCCeEEeeccCHHHHHHHHHHhcCCCCceEEEecccCCc
Confidence 235899999999999999999988999999998877544
No 120
>PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT). This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=99.47 E-value=9.6e-13 Score=95.09 Aligned_cols=103 Identities=20% Similarity=0.217 Sum_probs=71.2
Q ss_pred CCCeEEEEecCCCcchhHHhhHHHHHh--------CCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHh-----
Q 024134 15 KQKHFVLVHGSNHGAWCWYKVKPRLEA--------AGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASL----- 81 (272)
Q Consensus 15 ~~~~vv~lhG~~~~~~~~~~~~~~l~~--------~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l----- 81 (272)
++.+||||||.+++...++.+...+.+ ..++++++|+......-.. ..+.+.++.+.+.++.+
T Consensus 3 ~g~pVlFIhG~~Gs~~q~rsl~~~~~~~~~~~~~~~~~d~ft~df~~~~s~~~g----~~l~~q~~~~~~~i~~i~~~~~ 78 (225)
T PF07819_consen 3 SGIPVLFIHGNAGSYKQVRSLASELQRKALLNDNSSHFDFFTVDFNEELSAFHG----RTLQRQAEFLAEAIKYILELYK 78 (225)
T ss_pred CCCEEEEECcCCCCHhHHHHHHHHHhhhhhhccCccceeEEEeccCcccccccc----ccHHHHHHHHHHHHHHHHHhhh
Confidence 578999999999999988888766632 2478899998764322111 23333333333333332
Q ss_pred ---cCCCcEEEEEeCcchHHHHHHHhhCc---cceeeeeeeeccCC
Q 024134 82 ---SADEKVILVGHSFGGLSVALAADKFP---HKISVAIFLTAFMP 121 (272)
Q Consensus 82 ---~~~~~~~lvG~S~Gg~~a~~~a~~~p---~~v~~lvl~~~~~~ 121 (272)
.+.+++++|||||||.++..++...+ +.|+.+|.++++..
T Consensus 79 ~~~~~~~~vilVgHSmGGlvar~~l~~~~~~~~~v~~iitl~tPh~ 124 (225)
T PF07819_consen 79 SNRPPPRSVILVGHSMGGLVARSALSLPNYDPDSVKTIITLGTPHR 124 (225)
T ss_pred hccCCCCceEEEEEchhhHHHHHHHhccccccccEEEEEEEcCCCC
Confidence 36789999999999999988886543 47999999997643
No 121
>PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like.; PDB: 3LP5_A 3FLE_A 3DS8_A.
Probab=99.46 E-value=2.1e-12 Score=94.27 Aligned_cols=204 Identities=17% Similarity=0.190 Sum_probs=118.6
Q ss_pred cCCCeEEEEecCCCcchhHHhhHHHHH-hCCC--eEE--EEcCCCC----CCCC---ccc-------ccc-cchhhchHH
Q 024134 14 KKQKHFVLVHGSNHGAWCWYKVKPRLE-AAGH--RVT--AMDLAAS----GINM---KKI-------QDV-RSFYEYNEP 73 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~~~~~~~~l~-~~g~--~v~--~~d~~G~----G~s~---~~~-------~~~-~~~~~~~~~ 73 (272)
....|.||+||++++...+..++..+. +.|. .++ .++.-|. |.=. ..+ ... .++...++.
T Consensus 9 ~~~tPTifihG~~gt~~s~~~mi~~~~~~~~~~~~~l~v~V~~~G~v~~~G~~~~~~~nPiIqV~F~~n~~~~~~~qa~w 88 (255)
T PF06028_consen 9 QSTTPTIFIHGYGGTANSFNHMINRLENKQGVAQKVLTVTVSKNGKVKVSGKLSKNAKNPIIQVNFEDNRNANYKKQAKW 88 (255)
T ss_dssp -S-EEEEEE--TTGGCCCCHHHHHHHHHCSTS-S-EEEEEEETTSEEEEES---TT-SS-EEEEEESSTT-CHHHHHHHH
T ss_pred cCCCcEEEECCCCCChhHHHHHHHHHHhhcCCCceEEEEEECCCCeEEEeeecCCCCCCCEEEEEecCCCcCCHHHHHHH
Confidence 345789999999999999999999997 5554 233 3333332 2111 111 111 267778888
Q ss_pred HHHHHHHh---cCCCcEEEEEeCcchHHHHHHHhhCcc-----ceeeeeeeeccCCCCCCCchhhhhhcccCCchhhhhh
Q 024134 74 LLEILASL---SADEKVILVGHSFGGLSVALAADKFPH-----KISVAIFLTAFMPDTKHQPSYVVERFSESIPREERLD 145 (272)
Q Consensus 74 ~~~~i~~l---~~~~~~~lvG~S~Gg~~a~~~a~~~p~-----~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (272)
+..++..| .+.+++-+|||||||..++.++..+.. .+.++|.++++.......... ....
T Consensus 89 l~~vl~~L~~~Y~~~~~N~VGHSmGg~~~~~yl~~~~~~~~~P~l~K~V~Ia~pfng~~~~~~~--~~~~---------- 156 (255)
T PF06028_consen 89 LKKVLKYLKKKYHFKKFNLVGHSMGGLSWTYYLENYGNDKNLPKLNKLVTIAGPFNGILGMNDD--QNQN---------- 156 (255)
T ss_dssp HHHHHHHHHHCC--SEEEEEEETHHHHHHHHHHHHCTTGTTS-EEEEEEEES--TTTTTCCSC---TTTT----------
T ss_pred HHHHHHHHHHhcCCCEEeEEEECccHHHHHHHHHHhccCCCCcccceEEEeccccCcccccccc--chhh----------
Confidence 88888887 477899999999999999999887542 589999999875433211100 0000
Q ss_pred hhhhccccCCCccchhhhhhhHHHHhhccCCChhHHHHHHHhccCCccchHHhhhcccccccccCCceeEEEEeC-----
Q 024134 146 TQYSIIDESNPSRMSILFGHKFLTLKLYQLSPPEDLELAKMLVKPGLLFTDELSKANEFSNEGYGSVKRDFVGSD----- 220 (272)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~----- 220 (272)
.+.. .. | .........+... .+ ..+ + .++.+|-|.|.
T Consensus 157 -~~~~----~g--------p------------~~~~~~y~~l~~~-------~~--~~~---p-~~i~VLnI~G~~~~g~ 198 (255)
T PF06028_consen 157 -DLNK----NG--------P------------KSMTPMYQDLLKN-------RR--KNF---P-KNIQVLNIYGDLEDGS 198 (255)
T ss_dssp --CST----T---------B------------SS--HHHHHHHHT-------HG--GGS---T-TT-EEEEEEEESBTTC
T ss_pred -hhcc----cC--------C------------cccCHHHHHHHHH-------HH--hhC---C-CCeEEEEEecccCCCC
Confidence 0000 00 0 0000000000000 00 001 0 17889999998
Q ss_pred -CCCCccHHHHHHHHhcCCC----ceEEEec--CCCcccccCCCchHHHHHHHHH
Q 024134 221 -KDNCIPKEFQQWMIQNNPV----NEVMAIK--GADHMAMLSKPQPLSDCFSQIA 268 (272)
Q Consensus 221 -~D~~~~~~~~~~~~~~~~~----~~~~~~~--~~gH~~~~~~p~~~~~~i~~fl 268 (272)
.|..||...+..+...+.+ .+-.++. ++.|.-..|++ ++.+.|.+||
T Consensus 199 ~sDG~V~~~Ss~sl~~L~~~~~~~Y~e~~v~G~~a~HS~LheN~-~V~~~I~~FL 252 (255)
T PF06028_consen 199 NSDGIVPNASSLSLRYLLKNRAKSYQEKTVTGKDAQHSQLHENP-QVDKLIIQFL 252 (255)
T ss_dssp SBTSSSBHHHHCTHHHHCTTTSSEEEEEEEESGGGSCCGGGCCH-HHHHHHHHHH
T ss_pred CCCeEEeHHHHHHHHHHhhcccCceEEEEEECCCCccccCCCCH-HHHHHHHHHh
Confidence 7999999988877776643 3445565 36898877766 6779999997
No 122
>KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only]
Probab=99.45 E-value=2.8e-12 Score=88.68 Aligned_cols=173 Identities=14% Similarity=0.119 Sum_probs=115.5
Q ss_pred CeEEEEecCCCcchh-HHhhHHHHHhCCCeEEEEcC-CCCCCCCcccc-------cccchhhchHHHHHHHHHh---cCC
Q 024134 17 KHFVLVHGSNHGAWC-WYKVKPRLEAAGHRVTAMDL-AASGINMKKIQ-------DVRSFYEYNEPLLEILASL---SAD 84 (272)
Q Consensus 17 ~~vv~lhG~~~~~~~-~~~~~~~l~~~g~~v~~~d~-~G~G~s~~~~~-------~~~~~~~~~~~~~~~i~~l---~~~ 84 (272)
..||.+--+.+.... -+..+..++..||.|++||+ +|--.|..... ...+..-.-.++..+++.+ ...
T Consensus 40 ~~li~i~DvfG~~~~n~r~~Adk~A~~Gy~v~vPD~~~Gdp~~~~~~~~~~~~w~~~~~~~~~~~~i~~v~k~lk~~g~~ 119 (242)
T KOG3043|consen 40 KVLIVIQDVFGFQFPNTREGADKVALNGYTVLVPDFFRGDPWSPSLQKSERPEWMKGHSPPKIWKDITAVVKWLKNHGDS 119 (242)
T ss_pred eEEEEEEeeeccccHHHHHHHHHHhcCCcEEEcchhhcCCCCCCCCChhhhHHHHhcCCcccchhHHHHHHHHHHHcCCc
Confidence 466777666555544 67888999999999999996 55222222110 1124444444555555554 347
Q ss_pred CcEEEEEeCcchHHHHHHHhhCccceeeeeeeeccCCCCCCCchhhhhhcccCCchhhhhhhhhhccccCCCccchhhhh
Q 024134 85 EKVILVGHSFGGLSVALAADKFPHKISVAIFLTAFMPDTKHQPSYVVERFSESIPREERLDTQYSIIDESNPSRMSILFG 164 (272)
Q Consensus 85 ~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (272)
+++-++|.+|||-++..+....| .+.+.+..-|.....
T Consensus 120 kkIGv~GfCwGak~vv~~~~~~~-~f~a~v~~hps~~d~----------------------------------------- 157 (242)
T KOG3043|consen 120 KKIGVVGFCWGAKVVVTLSAKDP-EFDAGVSFHPSFVDS----------------------------------------- 157 (242)
T ss_pred ceeeEEEEeecceEEEEeeccch-hheeeeEecCCcCCh-----------------------------------------
Confidence 88999999999999988888877 577776655532100
Q ss_pred hhHHHHhhccCCChhHHHHHHHhccCCccchHHhhhcccccccccCCceeEEEEeCCCCCccHHHHHHHHhcCC-----C
Q 024134 165 HKFLTLKLYQLSPPEDLELAKMLVKPGLLFTDELSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNNP-----V 239 (272)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~-----~ 239 (272)
.+...+++|++++.|+.|.++|++....+.+.+. +
T Consensus 158 ----------------------------------------~D~~~vk~Pilfl~ae~D~~~p~~~v~~~ee~lk~~~~~~ 197 (242)
T KOG3043|consen 158 ----------------------------------------ADIANVKAPILFLFAELDEDVPPKDVKAWEEKLKENPAVG 197 (242)
T ss_pred ----------------------------------------hHHhcCCCCEEEEeecccccCCHHHHHHHHHHHhcCcccc
Confidence 0011238999999999999999998877776653 2
Q ss_pred ceEEEecCCCccccc-----CCC------chHHHHHHHHHHhh
Q 024134 240 NEVMAIKGADHMAML-----SKP------QPLSDCFSQIAHKY 271 (272)
Q Consensus 240 ~~~~~~~~~gH~~~~-----~~p------~~~~~~i~~fl~~~ 271 (272)
.++.++++.+|.... +.| |+..+.+.+|++++
T Consensus 198 ~~v~~f~g~~HGf~~~r~~~~~Ped~~~~eea~~~~~~Wf~~y 240 (242)
T KOG3043|consen 198 SQVKTFSGVGHGFVARRANISSPEDKKAAEEAYQRFISWFKHY 240 (242)
T ss_pred eeEEEcCCccchhhhhccCCCChhHHHHHHHHHHHHHHHHHHh
Confidence 469999999997763 334 33445566777654
No 123
>KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms]
Probab=99.43 E-value=7.5e-11 Score=89.33 Aligned_cols=223 Identities=15% Similarity=0.119 Sum_probs=126.6
Q ss_pred cCCCeEEEEecCCC-----cchhHHhhHHHHH-hCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHH-h----c
Q 024134 14 KKQKHFVLVHGSNH-----GAWCWYKVKPRLE-AAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILAS-L----S 82 (272)
Q Consensus 14 ~~~~~vv~lhG~~~-----~~~~~~~~~~~l~-~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~-l----~ 82 (272)
...|.||++||.|. ....|..+...++ +.+..|+.+|+|=--+..-| ..++|..+.+..+.++ . .
T Consensus 88 ~~~p~lvyfHGGGf~~~S~~~~~y~~~~~~~a~~~~~vvvSVdYRLAPEh~~P----a~y~D~~~Al~w~~~~~~~~~~~ 163 (336)
T KOG1515|consen 88 TKLPVLVYFHGGGFCLGSANSPAYDSFCTRLAAELNCVVVSVDYRLAPEHPFP----AAYDDGWAALKWVLKNSWLKLGA 163 (336)
T ss_pred cCceEEEEEeCCccEeCCCCCchhHHHHHHHHHHcCeEEEecCcccCCCCCCC----ccchHHHHHHHHHHHhHHHHhCC
Confidence 35689999999873 2455788888885 45788999999844433322 2556666666666554 1 3
Q ss_pred CCCcEEEEEeCcchHHHHHHHhhC------ccceeeeeeeeccCCCCCCCchhhhhhcccCCchhhhhhhhhhccccCCC
Q 024134 83 ADEKVILVGHSFGGLSVALAADKF------PHKISVAIFLTAFMPDTKHQPSYVVERFSESIPREERLDTQYSIIDESNP 156 (272)
Q Consensus 83 ~~~~~~lvG~S~Gg~~a~~~a~~~------p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (272)
+.++++|+|-|.||.+|..+|.+. +-++++.|++-|..................... .
T Consensus 164 D~~rv~l~GDSaGGNia~~va~r~~~~~~~~~ki~g~ili~P~~~~~~~~~~e~~~~~~~~~~-~--------------- 227 (336)
T KOG1515|consen 164 DPSRVFLAGDSAGGNIAHVVAQRAADEKLSKPKIKGQILIYPFFQGTDRTESEKQQNLNGSPE-L--------------- 227 (336)
T ss_pred CcccEEEEccCccHHHHHHHHHHHhhccCCCcceEEEEEEecccCCCCCCCHHHHHhhcCCcc-h---------------
Confidence 667899999999999988887653 357999999999865544332211111110000 0
Q ss_pred ccchhhhhhhHHHHhhccCCChhHHHHHHHhccCCccchHHhhhcccccccccCCc-eeEEEEeCCCCCccHH--HHHHH
Q 024134 157 SRMSILFGHKFLTLKLYQLSPPEDLELAKMLVKPGLLFTDELSKANEFSNEGYGSV-KRDFVGSDKDNCIPKE--FQQWM 233 (272)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-P~l~i~g~~D~~~~~~--~~~~~ 233 (272)
.......+.+ ........ ....... ..... ..........+ |++++.++.|.+.... .++++
T Consensus 228 ---~~~~~~~~w~-~~lP~~~~---~~~~p~~-------np~~~-~~~~d~~~~~lp~tlv~~ag~D~L~D~~~~Y~~~L 292 (336)
T KOG1515|consen 228 ---ARPKIDKWWR-LLLPNGKT---DLDHPFI-------NPVGN-SLAKDLSGLGLPPTLVVVAGYDVLRDEGLAYAEKL 292 (336)
T ss_pred ---hHHHHHHHHH-HhCCCCCC---CcCCccc-------ccccc-ccccCccccCCCceEEEEeCchhhhhhhHHHHHHH
Confidence 0000000001 00000000 0000000 00000 00011112244 5999999999876432 44555
Q ss_pred HhcCCCceEEEecCCCcccccCCCc-----hHHHHHHHHHHhh
Q 024134 234 IQNNPVNEVMAIKGADHMAMLSKPQ-----PLSDCFSQIAHKY 271 (272)
Q Consensus 234 ~~~~~~~~~~~~~~~gH~~~~~~p~-----~~~~~i~~fl~~~ 271 (272)
.+.--.+++..++++.|.++.-.|. ++.+.+.+|++++
T Consensus 293 kk~Gv~v~~~~~e~~~H~~~~~~~~~~~a~~~~~~i~~fi~~~ 335 (336)
T KOG1515|consen 293 KKAGVEVTLIHYEDGFHGFHILDPSSKEAHALMDAIVEFIKSN 335 (336)
T ss_pred HHcCCeEEEEEECCCeeEEEecCCchhhHHHHHHHHHHHHhhc
Confidence 5544456777899999998876664 5667788888764
No 124
>KOG4627 consensus Kynurenine formamidase [Amino acid transport and metabolism]
Probab=99.43 E-value=9.2e-13 Score=89.66 Aligned_cols=188 Identities=14% Similarity=0.092 Sum_probs=113.1
Q ss_pred hhhccCCCeEEEEecCC---CcchhHHhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcCCCc
Q 024134 10 MTEAKKQKHFVLVHGSN---HGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSADEK 86 (272)
Q Consensus 10 ~~~~~~~~~vv~lhG~~---~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~~~~ 86 (272)
|.+....+..||+||.- ++....-..+..+.++||+|..++ ++.++....-..++.+...-+.-+++.....+.
T Consensus 61 wg~~~~~klfIfIHGGYW~~g~rk~clsiv~~a~~~gY~vasvg---Y~l~~q~htL~qt~~~~~~gv~filk~~~n~k~ 137 (270)
T KOG4627|consen 61 WGSTNQAKLFIFIHGGYWQEGDRKMCLSIVGPAVRRGYRVASVG---YNLCPQVHTLEQTMTQFTHGVNFILKYTENTKV 137 (270)
T ss_pred ecCCCCccEEEEEecchhhcCchhcccchhhhhhhcCeEEEEec---cCcCcccccHHHHHHHHHHHHHHHHHhccccee
Confidence 33345678999999973 222233334444557899999985 444443221113455555555555666544556
Q ss_pred EEEEEeCcchHHHHHHHhh-CccceeeeeeeeccCCCCCCCchhhhhhcccCCchhhhhhhhhhccccCCCccchhhhhh
Q 024134 87 VILVGHSFGGLSVALAADK-FPHKISVAIFLTAFMPDTKHQPSYVVERFSESIPREERLDTQYSIIDESNPSRMSILFGH 165 (272)
Q Consensus 87 ~~lvG~S~Gg~~a~~~a~~-~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (272)
+.+-|||.|+.++..+..+ +..+|.++++.++.... +.+..... .. ..-
T Consensus 138 l~~gGHSaGAHLa~qav~R~r~prI~gl~l~~GvY~l---------~EL~~te~---------g~---------dlg--- 187 (270)
T KOG4627|consen 138 LTFGGHSAGAHLAAQAVMRQRSPRIWGLILLCGVYDL---------RELSNTES---------GN---------DLG--- 187 (270)
T ss_pred EEEcccchHHHHHHHHHHHhcCchHHHHHHHhhHhhH---------HHHhCCcc---------cc---------ccC---
Confidence 6777999999998887765 44579999998876431 11111000 00 000
Q ss_pred hHHHHhhccCCChhHHHHHHHhccCCccchHHhhhcccccccccCCceeEEEEeCCCCCccHHHHHHHHhcCCCceEEEe
Q 024134 166 KFLTLKLYQLSPPEDLELAKMLVKPGLLFTDELSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNNPVNEVMAI 245 (272)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~ 245 (272)
...+..+.. ...+.....+++|++++.|++|...-.+..+.++.....+++..+
T Consensus 188 ----------Lt~~~ae~~----------------Scdl~~~~~v~~~ilVv~~~~espklieQnrdf~~q~~~a~~~~f 241 (270)
T KOG4627|consen 188 ----------LTERNAESV----------------SCDLWEYTDVTVWILVVAAEHESPKLIEQNRDFADQLRKASFTLF 241 (270)
T ss_pred ----------cccchhhhc----------------CccHHHhcCceeeeeEeeecccCcHHHHhhhhHHHHhhhcceeec
Confidence 000000000 001111223488999999999976667788888888888999999
Q ss_pred cCCCcccccCC
Q 024134 246 KGADHMAMLSK 256 (272)
Q Consensus 246 ~~~gH~~~~~~ 256 (272)
+|.+|+-..++
T Consensus 242 ~n~~hy~I~~~ 252 (270)
T KOG4627|consen 242 KNYDHYDIIEE 252 (270)
T ss_pred CCcchhhHHHH
Confidence 99999977654
No 125
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=99.42 E-value=3.7e-11 Score=92.28 Aligned_cols=105 Identities=14% Similarity=0.095 Sum_probs=68.8
Q ss_pred CCCeEEEEecCC---CcchhH-HhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHh----cCCCc
Q 024134 15 KQKHFVLVHGSN---HGAWCW-YKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASL----SADEK 86 (272)
Q Consensus 15 ~~~~vv~lhG~~---~~~~~~-~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l----~~~~~ 86 (272)
..|+||++||.+ ++.... ..+...+...|+.|+++|+|-..+-..+ ..++|..+.+..+.++. .+.++
T Consensus 78 ~~p~vly~HGGg~~~g~~~~~~~~~~~~~~~~g~~vv~vdYrlaPe~~~p----~~~~d~~~a~~~l~~~~~~~g~dp~~ 153 (312)
T COG0657 78 TAPVVLYLHGGGWVLGSLRTHDALVARLAAAAGAVVVSVDYRLAPEHPFP----AALEDAYAAYRWLRANAAELGIDPSR 153 (312)
T ss_pred CCcEEEEEeCCeeeecChhhhHHHHHHHHHHcCCEEEecCCCCCCCCCCC----chHHHHHHHHHHHHhhhHhhCCCccc
Confidence 478999999987 334444 3444555568999999999844332111 23333333333333331 13678
Q ss_pred EEEEEeCcchHHHHHHHhhCcc----ceeeeeeeeccCCCC
Q 024134 87 VILVGHSFGGLSVALAADKFPH----KISVAIFLTAFMPDT 123 (272)
Q Consensus 87 ~~lvG~S~Gg~~a~~~a~~~p~----~v~~lvl~~~~~~~~ 123 (272)
+.++|+|.||.+++.++..-.+ .....+++.|.....
T Consensus 154 i~v~GdSAGG~La~~~a~~~~~~~~~~p~~~~li~P~~d~~ 194 (312)
T COG0657 154 IAVAGDSAGGHLALALALAARDRGLPLPAAQVLISPLLDLT 194 (312)
T ss_pred eEEEecCcccHHHHHHHHHHHhcCCCCceEEEEEecccCCc
Confidence 9999999999999999876554 467888888875433
No 126
>PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=99.42 E-value=6.7e-12 Score=88.98 Aligned_cols=107 Identities=21% Similarity=0.136 Sum_probs=77.5
Q ss_pred cCCCeEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHh------cCCCcE
Q 024134 14 KKQKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASL------SADEKV 87 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l------~~~~~~ 87 (272)
+.-|.|+|+||+.-....|..+..+++..||-|+++++-..-. .....+..+....++++..-+.++ .+..++
T Consensus 44 G~yPVilF~HG~~l~ns~Ys~lL~HIASHGfIVVAPQl~~~~~-p~~~~Ei~~aa~V~~WL~~gL~~~Lp~~V~~nl~kl 122 (307)
T PF07224_consen 44 GTYPVILFLHGFNLYNSFYSQLLAHIASHGFIVVAPQLYTLFP-PDGQDEIKSAASVINWLPEGLQHVLPENVEANLSKL 122 (307)
T ss_pred CCccEEEEeechhhhhHHHHHHHHHHhhcCeEEEechhhcccC-CCchHHHHHHHHHHHHHHhhhhhhCCCCcccccceE
Confidence 4568999999999999999999999999999999999874311 111111123333333443333333 256789
Q ss_pred EEEEeCcchHHHHHHHhhCc--cceeeeeeeeccCC
Q 024134 88 ILVGHSFGGLSVALAADKFP--HKISVAIFLTAFMP 121 (272)
Q Consensus 88 ~lvG~S~Gg~~a~~~a~~~p--~~v~~lvl~~~~~~ 121 (272)
.++|||.||-.|..+|..+. -.+++||.++|...
T Consensus 123 al~GHSrGGktAFAlALg~a~~lkfsaLIGiDPV~G 158 (307)
T PF07224_consen 123 ALSGHSRGGKTAFALALGYATSLKFSALIGIDPVAG 158 (307)
T ss_pred EEeecCCccHHHHHHHhcccccCchhheecccccCC
Confidence 99999999999999998774 24889999998743
No 127
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=99.41 E-value=2e-11 Score=87.08 Aligned_cols=106 Identities=14% Similarity=0.105 Sum_probs=68.9
Q ss_pred CCCeEEEEecCCCcchhHHhh--HHHHHh-CCCeEEEEcCCCCCCCC---cc-cccccchhhchHHHHHHHHHh-----c
Q 024134 15 KQKHFVLVHGSNHGAWCWYKV--KPRLEA-AGHRVTAMDLAASGINM---KK-IQDVRSFYEYNEPLLEILASL-----S 82 (272)
Q Consensus 15 ~~~~vv~lhG~~~~~~~~~~~--~~~l~~-~g~~v~~~d~~G~G~s~---~~-~~~~~~~~~~~~~~~~~i~~l-----~ 82 (272)
+.|.||++||.+.+...+... ...|++ .||-|+.++........ .. ......-.+.+..|.++++++ -
T Consensus 15 ~~PLVv~LHG~~~~a~~~~~~s~~~~lAd~~GfivvyP~~~~~~~~~~cw~w~~~~~~~g~~d~~~i~~lv~~v~~~~~i 94 (220)
T PF10503_consen 15 PVPLVVVLHGCGQSAEDFAAGSGWNALADREGFIVVYPEQSRRANPQGCWNWFSDDQQRGGGDVAFIAALVDYVAARYNI 94 (220)
T ss_pred CCCEEEEeCCCCCCHHHHHhhcCHHHHhhcCCeEEEcccccccCCCCCcccccccccccCccchhhHHHHHHhHhhhccc
Confidence 468999999999999876532 234553 57888888854211110 00 000000111233344444443 2
Q ss_pred CCCcEEEEEeCcchHHHHHHHhhCccceeeeeeeeccC
Q 024134 83 ADEKVILVGHSFGGLSVALAADKFPHKISVAIFLTAFM 120 (272)
Q Consensus 83 ~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~ 120 (272)
+..+|++.|+|.||+++..++..+|+.+.++..+++..
T Consensus 95 D~~RVyv~G~S~Gg~ma~~la~~~pd~faa~a~~sG~~ 132 (220)
T PF10503_consen 95 DPSRVYVTGLSNGGMMANVLACAYPDLFAAVAVVSGVP 132 (220)
T ss_pred CCCceeeEEECHHHHHHHHHHHhCCccceEEEeecccc
Confidence 56789999999999999999999999999988877653
No 128
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=99.40 E-value=1.5e-11 Score=83.99 Aligned_cols=97 Identities=18% Similarity=0.213 Sum_probs=78.7
Q ss_pred CeEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHh---cCCCcEEEEEeC
Q 024134 17 KHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASL---SADEKVILVGHS 93 (272)
Q Consensus 17 ~~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l---~~~~~~~lvG~S 93 (272)
..+||+.|=++-...=..+++.|+++|+.|+.+|-+-|-.+. .+.++.+.|+.+++++. -+.++++|+|+|
T Consensus 3 t~~v~~SGDgGw~~~d~~~a~~l~~~G~~VvGvdsl~Yfw~~------rtP~~~a~Dl~~~i~~y~~~w~~~~vvLiGYS 76 (192)
T PF06057_consen 3 TLAVFFSGDGGWRDLDKQIAEALAKQGVPVVGVDSLRYFWSE------RTPEQTAADLARIIRHYRARWGRKRVVLIGYS 76 (192)
T ss_pred EEEEEEeCCCCchhhhHHHHHHHHHCCCeEEEechHHHHhhh------CCHHHHHHHHHHHHHHHHHHhCCceEEEEeec
Confidence 467888887776655578899999999999999977665553 36677788888888776 267899999999
Q ss_pred cchHHHHHHHhhCc----cceeeeeeeecc
Q 024134 94 FGGLSVALAADKFP----HKISVAIFLTAF 119 (272)
Q Consensus 94 ~Gg~~a~~~a~~~p----~~v~~lvl~~~~ 119 (272)
+|+-+.-....+.| ++|+.++|+++.
T Consensus 77 FGADvlP~~~nrLp~~~r~~v~~v~Ll~p~ 106 (192)
T PF06057_consen 77 FGADVLPFIYNRLPAALRARVAQVVLLSPS 106 (192)
T ss_pred CCchhHHHHHhhCCHHHHhheeEEEEeccC
Confidence 99988888888877 479999999985
No 129
>PTZ00472 serine carboxypeptidase (CBP1); Provisional
Probab=99.38 E-value=8.5e-11 Score=94.03 Aligned_cols=108 Identities=12% Similarity=0.129 Sum_probs=75.2
Q ss_pred cCCCeEEEEecCCCcchhHHhhH-----------HH-------HHhCCCeEEEEcCC-CCCCCCcccc-cccchhhchHH
Q 024134 14 KKQKHFVLVHGSNHGAWCWYKVK-----------PR-------LEAAGHRVTAMDLA-ASGINMKKIQ-DVRSFYEYNEP 73 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~~~~~~-----------~~-------l~~~g~~v~~~d~~-G~G~s~~~~~-~~~~~~~~~~~ 73 (272)
.+.|.||+++|.++.+..+-.+. .. +.+. ..++.+|.| |+|.|..... ...+.++.++|
T Consensus 75 ~~~Pl~lwlnGGPG~ss~~G~f~E~GP~~i~~~~~~~~~n~~sW~~~-~~~l~iDqP~G~G~S~~~~~~~~~~~~~~a~d 153 (462)
T PTZ00472 75 PEAPVLLWMTGGPGCSSMFALLAENGPCLMNETTGDIYNNTYSWNNE-AYVIYVDQPAGVGFSYADKADYDHNESEVSED 153 (462)
T ss_pred CCCCEEEEECCCCcHHHHHhhhccCCCeEEeCCCCceeECCcccccc-cCeEEEeCCCCcCcccCCCCCCCCChHHHHHH
Confidence 46799999999988887652221 01 2222 689999975 8888865432 22455778888
Q ss_pred HHHHHHHh------cCCCcEEEEEeCcchHHHHHHHhhC----------ccceeeeeeeeccCCC
Q 024134 74 LLEILASL------SADEKVILVGHSFGGLSVALAADKF----------PHKISVAIFLTAFMPD 122 (272)
Q Consensus 74 ~~~~i~~l------~~~~~~~lvG~S~Gg~~a~~~a~~~----------p~~v~~lvl~~~~~~~ 122 (272)
+.++++.. ....+++|+|||+||.++..+|.+. +=.++++++-++....
T Consensus 154 ~~~~l~~f~~~~p~~~~~~~~i~GeSygG~y~p~~a~~i~~~n~~~~~~~inLkGi~IGNg~~dp 218 (462)
T PTZ00472 154 MYNFLQAFFGSHEDLRANDLFVVGESYGGHYAPATAYRINMGNKKGDGLYINLAGLAVGNGLTDP 218 (462)
T ss_pred HHHHHHHHHHhCccccCCCEEEEeecchhhhHHHHHHHHHhhccccCCceeeeEEEEEeccccCh
Confidence 88888754 1458999999999999888777652 1147888888876543
No 130
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=99.34 E-value=2.4e-11 Score=94.61 Aligned_cols=106 Identities=20% Similarity=0.274 Sum_probs=60.6
Q ss_pred cCCCeEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCCCCCCC------Ccc---cc---------------cc-----
Q 024134 14 KKQKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGIN------MKK---IQ---------------DV----- 64 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s------~~~---~~---------------~~----- 64 (272)
+.-|+|||-||++++...|..++..|+.+||-|+++|.|..-.+ +.. .. ..
T Consensus 98 ~~~PvvIFSHGlgg~R~~yS~~~~eLAS~GyVV~aieHrDgSa~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (379)
T PF03403_consen 98 GKFPVVIFSHGLGGSRTSYSAICGELASHGYVVAAIEHRDGSAPATYFMRDGSGAEVEPYVVEYLEEEWIPLRDFDPEEE 177 (379)
T ss_dssp S-EEEEEEE--TT--TTTTHHHHHHHHHTT-EEEEE---SS-SSEEEE-SSHHHHHHT---------EEEE-----GGGH
T ss_pred CCCCEEEEeCCCCcchhhHHHHHHHHHhCCeEEEEeccCCCceeEEEeccCCCccccccccccccccceeccccccchhH
Confidence 34589999999999999999999999999999999999954221 000 00 00
Q ss_pred c-----chhhchHHHHHHHHHh---c----------------------CCCcEEEEEeCcchHHHHHHHhhCccceeeee
Q 024134 65 R-----SFYEYNEPLLEILASL---S----------------------ADEKVILVGHSFGGLSVALAADKFPHKISVAI 114 (272)
Q Consensus 65 ~-----~~~~~~~~~~~~i~~l---~----------------------~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lv 114 (272)
+ .++.-++++..+++.+ . +..++.++|||+||..++.++.+. .++++.|
T Consensus 178 ~~~R~~QL~~R~~Ei~~~l~~L~~i~~G~~~~~~l~~~~~l~~~~grlD~~~i~~~GHSFGGATa~~~l~~d-~r~~~~I 256 (379)
T PF03403_consen 178 FELRNAQLRQRVAEIQFVLDALEEINSGDPVENVLPSSFDLSQFKGRLDLSRIGLAGHSFGGATALQALRQD-TRFKAGI 256 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT-----SS--SS-GGGGTT-EEEEEEEEEEETHHHHHHHHHHHH--TT--EEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCccCHHHHhhhcchhheeeeecCchHHHHHHHHhhc-cCcceEE
Confidence 0 0001122333333322 0 134689999999999999988665 6799999
Q ss_pred eeeccC
Q 024134 115 FLTAFM 120 (272)
Q Consensus 115 l~~~~~ 120 (272)
++++..
T Consensus 257 ~LD~W~ 262 (379)
T PF03403_consen 257 LLDPWM 262 (379)
T ss_dssp EES---
T ss_pred EeCCcc
Confidence 999863
No 131
>PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria. Their function is unknown.
Probab=99.34 E-value=3.1e-10 Score=88.45 Aligned_cols=81 Identities=17% Similarity=0.215 Sum_probs=61.6
Q ss_pred hhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHh----cCCCcEEEEEeCcchHHHHHHHhhCccc
Q 024134 34 KVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASL----SADEKVILVGHSFGGLSVALAADKFPHK 109 (272)
Q Consensus 34 ~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l----~~~~~~~lvG~S~Gg~~a~~~a~~~p~~ 109 (272)
.+...|. .|+.|+.+.+. +.+....+++|.......+++.+ .+..+++|+|.|.||+.++.+|+.+|+.
T Consensus 92 evG~AL~-~GHPvYFV~F~------p~P~pgQTl~DV~~ae~~Fv~~V~~~hp~~~kp~liGnCQgGWa~~mlAA~~Pd~ 164 (581)
T PF11339_consen 92 EVGVALR-AGHPVYFVGFF------PEPEPGQTLEDVMRAEAAFVEEVAERHPDAPKPNLIGNCQGGWAAMMLAALRPDL 164 (581)
T ss_pred HHHHHHH-cCCCeEEEEec------CCCCCCCcHHHHHHHHHHHHHHHHHhCCCCCCceEEeccHHHHHHHHHHhcCcCc
Confidence 4555664 68999888764 11222358888888777777776 2334899999999999999999999999
Q ss_pred eeeeeeeeccCC
Q 024134 110 ISVAIFLTAFMP 121 (272)
Q Consensus 110 v~~lvl~~~~~~ 121 (272)
+.-+|+-+++..
T Consensus 165 ~gplvlaGaPls 176 (581)
T PF11339_consen 165 VGPLVLAGAPLS 176 (581)
T ss_pred cCceeecCCCcc
Confidence 999888877643
No 132
>KOG2112 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=99.33 E-value=1.8e-11 Score=84.23 Aligned_cols=175 Identities=13% Similarity=0.167 Sum_probs=116.8
Q ss_pred CCeEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCCCCCCCCc-----------------ccccccchhhchHHHHHHH
Q 024134 16 QKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMK-----------------KIQDVRSFYEYNEPLLEIL 78 (272)
Q Consensus 16 ~~~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~-----------------~~~~~~~~~~~~~~~~~~i 78 (272)
..+||++||.+.++..|.++++.|..++..-|++.-|-.-.+.. ...+..++...++.+..++
T Consensus 3 ~atIi~LHglGDsg~~~~~~~~~l~l~NiKwIcP~aP~rpvt~~~G~~~~aWfd~~~~~~~~~~d~~~~~~aa~~i~~Li 82 (206)
T KOG2112|consen 3 TATIIFLHGLGDSGSGWAQFLKQLPLPNIKWICPTAPSRPVTLNGGAFMNAWFDIMELSSDAPEDEEGLHRAADNIANLI 82 (206)
T ss_pred eEEEEEEecCCCCCccHHHHHHcCCCCCeeEEcCCCCCCcccccCCCcccceecceeeCcccchhhhHHHHHHHHHHHHH
Confidence 45899999999999999998888877778888885553221110 0012234555566677777
Q ss_pred HHhc----CCCcEEEEEeCcchHHHHHHHhhCccceeeeeeeeccCCCCCCCchhhhhhcccCCchhhhhhhhhhccccC
Q 024134 79 ASLS----ADEKVILVGHSFGGLSVALAADKFPHKISVAIFLTAFMPDTKHQPSYVVERFSESIPREERLDTQYSIIDES 154 (272)
Q Consensus 79 ~~l~----~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (272)
++.. ...++.+-|.|+||.+++..+..+|..+.+++-..+..+..... ...+
T Consensus 83 ~~e~~~Gi~~~rI~igGfs~G~a~aL~~~~~~~~~l~G~~~~s~~~p~~~~~----~~~~-------------------- 138 (206)
T KOG2112|consen 83 DNEPANGIPSNRIGIGGFSQGGALALYSALTYPKALGGIFALSGFLPRASIG----LPGW-------------------- 138 (206)
T ss_pred HHHHHcCCCccceeEcccCchHHHHHHHHhccccccceeeccccccccchhh----ccCC--------------------
Confidence 7661 34568899999999999999999988888887776653311100 0000
Q ss_pred CCccchhhhhhhHHHHhhccCCChhHHHHHHHhccCCccchHHhhhcccccccccCCceeEEEEeCCCCCccHHHHHHHH
Q 024134 155 NPSRMSILFGHKFLTLKLYQLSPPEDLELAKMLVKPGLLFTDELSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMI 234 (272)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~ 234 (272)
..... ..|++..||+.|+++|....+..+
T Consensus 139 --------------------------------------------------~~~~~-~~~i~~~Hg~~d~~vp~~~g~~s~ 167 (206)
T KOG2112|consen 139 --------------------------------------------------LPGVN-YTPILLCHGTADPLVPFRFGEKSA 167 (206)
T ss_pred --------------------------------------------------ccccC-cchhheecccCCceeehHHHHHHH
Confidence 00000 469999999999999987655444
Q ss_pred hcC----CCceEEEecCCCcccccCCCchHHHHHHHHHH
Q 024134 235 QNN----PVNEVMAIKGADHMAMLSKPQPLSDCFSQIAH 269 (272)
Q Consensus 235 ~~~----~~~~~~~~~~~gH~~~~~~p~~~~~~i~~fl~ 269 (272)
+.+ ..+++..++|.+|...-+ ++ +.+..|++
T Consensus 168 ~~l~~~~~~~~f~~y~g~~h~~~~~---e~-~~~~~~~~ 202 (206)
T KOG2112|consen 168 QFLKSLGVRVTFKPYPGLGHSTSPQ---EL-DDLKSWIK 202 (206)
T ss_pred HHHHHcCCceeeeecCCccccccHH---HH-HHHHHHHH
Confidence 433 347899999999986544 33 34455554
No 133
>COG4188 Predicted dienelactone hydrolase [General function prediction only]
Probab=99.27 E-value=1.3e-11 Score=92.59 Aligned_cols=94 Identities=24% Similarity=0.241 Sum_probs=67.2
Q ss_pred CCCeEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCCCC--CCCCccccc-----ccchhhchHHHHHHHHHh------
Q 024134 15 KQKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAAS--GINMKKIQD-----VRSFYEYNEPLLEILASL------ 81 (272)
Q Consensus 15 ~~~~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~--G~s~~~~~~-----~~~~~~~~~~~~~~i~~l------ 81 (272)
.-|.|++-||.|++...|..+.+.|++.||-|..++.||- |..+..... ..-+.+...|+..+|+.+
T Consensus 70 ~~PlvvlshG~Gs~~~~f~~~A~~lAs~Gf~Va~~~hpgs~~~~~~~~~~~~~~~~p~~~~erp~dis~lLd~L~~~~~s 149 (365)
T COG4188 70 LLPLVVLSHGSGSYVTGFAWLAEHLASYGFVVAAPDHPGSNAGGAPAAYAGPGSYAPAEWWERPLDISALLDALLQLTAS 149 (365)
T ss_pred cCCeEEecCCCCCCccchhhhHHHHhhCceEEEeccCCCcccccCChhhcCCcccchhhhhcccccHHHHHHHHHHhhcC
Confidence 4589999999999999999999999999999999999983 332211110 011223334444444433
Q ss_pred ------cCCCcEEEEEeCcchHHHHHHHhhCcc
Q 024134 82 ------SADEKVILVGHSFGGLSVALAADKFPH 108 (272)
Q Consensus 82 ------~~~~~~~lvG~S~Gg~~a~~~a~~~p~ 108 (272)
.+..+|.++|||+||..+++++....+
T Consensus 150 P~l~~~ld~~~Vgv~GhS~GG~T~m~laGA~~~ 182 (365)
T COG4188 150 PALAGRLDPQRVGVLGHSFGGYTAMELAGAELD 182 (365)
T ss_pred cccccccCccceEEEecccccHHHHHhcccccc
Confidence 145689999999999999999876543
No 134
>PF01674 Lipase_2: Lipase (class 2); InterPro: IPR002918 Lipases or triacylglycerol acylhydrolases hydrolyse ester bonds in triacylglycerol giving diacylglycerol, monoacylglycerol, glycerol and free fatty acids []. This group of lipases has been called class 2 as they are not clearly related to other lipase families, and includes LipA and LipB from Bacillus subtilis [] and uncharacterised proteins from Caenorhabditis.; PDB: 2VTV_B 2X76_A 2X5X_A 2QXU_A 3QMM_A 1I6W_A 3D2C_J 2QXT_B 1R50_A 1T2N_A ....
Probab=99.26 E-value=2.3e-11 Score=86.64 Aligned_cols=88 Identities=26% Similarity=0.323 Sum_probs=52.8
Q ss_pred CeEEEEecCCC-cchhHHhhHHHHHhCCCe---EEEEcCCCCCCCCcccccccchhhchHHHHHHHHHh---cCCCcEEE
Q 024134 17 KHFVLVHGSNH-GAWCWYKVKPRLEAAGHR---VTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASL---SADEKVIL 89 (272)
Q Consensus 17 ~~vv~lhG~~~-~~~~~~~~~~~l~~~g~~---v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l---~~~~~~~l 89 (272)
.||||+||.++ ....|..+.+.|.++||. ++++++-....+...... ....+.+.++.++++.. .+. +|.|
T Consensus 2 ~PVVlVHG~~~~~~~~w~~~~~~l~~~GY~~~~vya~tyg~~~~~~~~~~~-~~~~~~~~~l~~fI~~Vl~~TGa-kVDI 79 (219)
T PF01674_consen 2 RPVVLVHGTGGNAYSNWSTLAPYLKAAGYCDSEVYALTYGSGNGSPSVQNA-HMSCESAKQLRAFIDAVLAYTGA-KVDI 79 (219)
T ss_dssp --EEEE--TTTTTCGGCCHHHHHHHHTT--CCCEEEE--S-CCHHTHHHHH-HB-HHHHHHHHHHHHHHHHHHT---EEE
T ss_pred CCEEEECCCCcchhhCHHHHHHHHHHcCCCcceeEeccCCCCCCCCccccc-ccchhhHHHHHHHHHHHHHhhCC-EEEE
Confidence 58999999998 567799999999999999 899998544432221111 11122334444444443 166 9999
Q ss_pred EEeCcchHHHHHHHhhC
Q 024134 90 VGHSFGGLSVALAADKF 106 (272)
Q Consensus 90 vG~S~Gg~~a~~~a~~~ 106 (272)
||||+||.++..+....
T Consensus 80 VgHS~G~~iaR~yi~~~ 96 (219)
T PF01674_consen 80 VGHSMGGTIARYYIKGG 96 (219)
T ss_dssp EEETCHHHHHHHHHHHC
T ss_pred EEcCCcCHHHHHHHHHc
Confidence 99999999999998643
No 135
>PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3.1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A ....
Probab=99.26 E-value=1.7e-11 Score=93.41 Aligned_cols=112 Identities=21% Similarity=0.237 Sum_probs=70.0
Q ss_pred ccCCCeEEEEecCCCcc--hhH-HhhHHHHH-h--CCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHh-----
Q 024134 13 AKKQKHFVLVHGSNHGA--WCW-YKVKPRLE-A--AGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASL----- 81 (272)
Q Consensus 13 ~~~~~~vv~lhG~~~~~--~~~-~~~~~~l~-~--~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l----- 81 (272)
+.++|++|++||+.++. ..| ..+.+.+. . .++.|+++|+...-..... ..........+.+..+|+.|
T Consensus 68 n~~~pt~iiiHGw~~~~~~~~~~~~~~~all~~~~~d~NVI~VDWs~~a~~~Y~-~a~~n~~~vg~~la~~l~~L~~~~g 146 (331)
T PF00151_consen 68 NPSKPTVIIIHGWTGSGSSESWIQDMIKALLQKDTGDYNVIVVDWSRGASNNYP-QAVANTRLVGRQLAKFLSFLINNFG 146 (331)
T ss_dssp -TTSEEEEEE--TT-TT-TTTHHHHHHHHHHCC--S-EEEEEEE-HHHHSS-HH-HHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred CCCCCeEEEEcCcCCcccchhHHHHHHHHHHhhccCCceEEEEcchhhcccccc-chhhhHHHHHHHHHHHHHHHHhhcC
Confidence 36789999999998887 344 44555443 3 4799999999632221110 01123344455555555554
Q ss_pred cCCCcEEEEEeCcchHHHHHHHhhCcc--ceeeeeeeeccCCCCCC
Q 024134 82 SADEKVILVGHSFGGLSVALAADKFPH--KISVAIFLTAFMPDTKH 125 (272)
Q Consensus 82 ~~~~~~~lvG~S~Gg~~a~~~a~~~p~--~v~~lvl~~~~~~~~~~ 125 (272)
...+++++||||+||.+|-.++..... +|.+++.++|+.+....
T Consensus 147 ~~~~~ihlIGhSLGAHvaG~aG~~~~~~~ki~rItgLDPAgP~F~~ 192 (331)
T PF00151_consen 147 VPPENIHLIGHSLGAHVAGFAGKYLKGGGKIGRITGLDPAGPLFEN 192 (331)
T ss_dssp --GGGEEEEEETCHHHHHHHHHHHTTT---SSEEEEES-B-TTTTT
T ss_pred CChhHEEEEeeccchhhhhhhhhhccCcceeeEEEecCcccccccC
Confidence 156899999999999999999998887 89999999998776544
No 136
>smart00824 PKS_TE Thioesterase. Peptide synthetases are involved in the non-ribosomal synthesis of peptide antibiotics. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates. There are also modules within the peptide synthetases that also share this similarity. With respect to antibiotic production, thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Thioesterases (non-integrated) have molecular masses of 25-29 kDa.
Probab=99.26 E-value=2.1e-10 Score=83.10 Aligned_cols=97 Identities=21% Similarity=0.246 Sum_probs=73.5
Q ss_pred EEecCC--CcchhHHhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcCCCcEEEEEeCcchHH
Q 024134 21 LVHGSN--HGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSADEKVILVGHSFGGLS 98 (272)
Q Consensus 21 ~lhG~~--~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~lvG~S~Gg~~ 98 (272)
++|+.+ ++...|..+...|.. .+.+++++.+|++.+.... .+.+++++.+...+.......+++++|||+||.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~l~~-~~~v~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~l~g~s~Gg~~ 77 (212)
T smart00824 2 CFPSTAAPSGPHEYARLAAALRG-RRDVSALPLPGFGPGEPLP---ASADALVEAQAEAVLRAAGGRPFVLVGHSSGGLL 77 (212)
T ss_pred ccCCCCCCCcHHHHHHHHHhcCC-CccEEEecCCCCCCCCCCC---CCHHHHHHHHHHHHHHhcCCCCeEEEEECHHHHH
Confidence 455544 667789999999975 5899999999998765433 3667777766665555435678999999999999
Q ss_pred HHHHHhh---CccceeeeeeeeccCC
Q 024134 99 VALAADK---FPHKISVAIFLTAFMP 121 (272)
Q Consensus 99 a~~~a~~---~p~~v~~lvl~~~~~~ 121 (272)
+...+.+ .++.+.+++++++..+
T Consensus 78 a~~~a~~l~~~~~~~~~l~~~~~~~~ 103 (212)
T smart00824 78 AHAVAARLEARGIPPAAVVLLDTYPP 103 (212)
T ss_pred HHHHHHHHHhCCCCCcEEEEEccCCC
Confidence 9998876 3456899998887543
No 137
>KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=2.4e-10 Score=90.88 Aligned_cols=207 Identities=14% Similarity=0.052 Sum_probs=127.8
Q ss_pred cCCCeEEEEecCCCcchh-----HHh--hHHHHHhCCCeEEEEcCCCCCCCCccc-------ccccchhhchHHHHHHHH
Q 024134 14 KKQKHFVLVHGSNHGAWC-----WYK--VKPRLEAAGHRVTAMDLAASGINMKKI-------QDVRSFYEYNEPLLEILA 79 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~-----~~~--~~~~l~~~g~~v~~~d~~G~G~s~~~~-------~~~~~~~~~~~~~~~~i~ 79 (272)
.+-|+++++-|.++-.-. |.. -...|+..||-|+.+|-||.-...... .....++|.++-+.-+.+
T Consensus 640 kkYptvl~VYGGP~VQlVnnsfkgi~ylR~~~LaslGy~Vv~IDnRGS~hRGlkFE~~ik~kmGqVE~eDQVeglq~Lae 719 (867)
T KOG2281|consen 640 KKYPTVLNVYGGPGVQLVNNSFKGIQYLRFCRLASLGYVVVFIDNRGSAHRGLKFESHIKKKMGQVEVEDQVEGLQMLAE 719 (867)
T ss_pred CCCceEEEEcCCCceEEeeccccceehhhhhhhhhcceEEEEEcCCCccccchhhHHHHhhccCeeeehhhHHHHHHHHH
Confidence 345899999998865432 211 135678899999999999976554322 133578888888888888
Q ss_pred Hh--cCCCcEEEEEeCcchHHHHHHHhhCccceeeeeeeeccCCCCCCCchhhhhhcccCCchhhhhhhhhhccccCCCc
Q 024134 80 SL--SADEKVILVGHSFGGLSVALAADKFPHKISVAIFLTAFMPDTKHQPSYVVERFSESIPREERLDTQYSIIDESNPS 157 (272)
Q Consensus 80 ~l--~~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (272)
+. -+..+|.+-|||.||.++++...++|+-++..|.-+|......... ...++.+.
T Consensus 720 q~gfidmdrV~vhGWSYGGYLSlm~L~~~P~IfrvAIAGapVT~W~~YDT-gYTERYMg--------------------- 777 (867)
T KOG2281|consen 720 QTGFIDMDRVGVHGWSYGGYLSLMGLAQYPNIFRVAIAGAPVTDWRLYDT-GYTERYMG--------------------- 777 (867)
T ss_pred hcCcccchheeEeccccccHHHHHHhhcCcceeeEEeccCcceeeeeecc-cchhhhcC---------------------
Confidence 76 2568899999999999999999999998887775555422110000 00011000
Q ss_pred cchhhhhhhHHHHhhccCCChhHHHHHHHhccCCccchHHhhhcccccccccCCceeEEEEeCCCCCccHHHHHHHH---
Q 024134 158 RMSILFGHKFLTLKLYQLSPPEDLELAKMLVKPGLLFTDELSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMI--- 234 (272)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~--- 234 (272)
-....+..-...... .....+.+ -.-..+++||--|.-+.......+.
T Consensus 778 ----------------~P~~nE~gY~agSV~----------~~Veklpd---epnRLlLvHGliDENVHF~Hts~Lvs~l 828 (867)
T KOG2281|consen 778 ----------------YPDNNEHGYGAGSVA----------GHVEKLPD---EPNRLLLVHGLIDENVHFAHTSRLVSAL 828 (867)
T ss_pred ----------------CCccchhcccchhHH----------HHHhhCCC---CCceEEEEecccccchhhhhHHHHHHHH
Confidence 000000000000000 00000110 1345899999999988766555444
Q ss_pred -hcCCCceEEEecCCCccccc-CCCchHHHHHHHHHHhh
Q 024134 235 -QNNPVNEVMAIKGADHMAML-SKPQPLSDCFSQIAHKY 271 (272)
Q Consensus 235 -~~~~~~~~~~~~~~gH~~~~-~~p~~~~~~i~~fl~~~ 271 (272)
+.-+..+++++|+--|.+-. |...-+...+..|++++
T Consensus 829 vkagKpyeL~IfP~ERHsiR~~es~~~yE~rll~FlQ~~ 867 (867)
T KOG2281|consen 829 VKAGKPYELQIFPNERHSIRNPESGIYYEARLLHFLQEN 867 (867)
T ss_pred HhCCCceEEEEccccccccCCCccchhHHHHHHHHHhhC
Confidence 33455699999999999765 33355677788888763
No 138
>PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B.
Probab=99.22 E-value=1.1e-10 Score=83.93 Aligned_cols=49 Identities=27% Similarity=0.360 Sum_probs=36.6
Q ss_pred hHHHHHHHHHhc--CCCcEEEEEeCcchHHHHHHHhhCccceeeeeeeeccC
Q 024134 71 NEPLLEILASLS--ADEKVILVGHSFGGLSVALAADKFPHKISVAIFLTAFM 120 (272)
Q Consensus 71 ~~~~~~~i~~l~--~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~ 120 (272)
.+...+++.... ..+++.|+|.|.||-+|+.+|..+| .|+++|.++|..
T Consensus 6 fe~Ai~~L~~~p~v~~~~Igi~G~SkGaelALllAs~~~-~i~avVa~~ps~ 56 (213)
T PF08840_consen 6 FEEAIDWLKSHPEVDPDKIGIIGISKGAELALLLASRFP-QISAVVAISPSS 56 (213)
T ss_dssp HHHHHHHHHCSTTB--SSEEEEEETHHHHHHHHHHHHSS-SEEEEEEES--S
T ss_pred HHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHHHHhcCC-CccEEEEeCCce
Confidence 344445555442 3468999999999999999999999 799999999864
No 139
>PRK04940 hypothetical protein; Provisional
Probab=99.21 E-value=3.1e-09 Score=72.69 Aligned_cols=171 Identities=11% Similarity=0.049 Sum_probs=96.5
Q ss_pred EEEEecCCCcchh--HHhh-HHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcC---CCcEEEEEe
Q 024134 19 FVLVHGSNHGAWC--WYKV-KPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSA---DEKVILVGH 92 (272)
Q Consensus 19 vv~lhG~~~~~~~--~~~~-~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~---~~~~~lvG~ 92 (272)
|+++||+.+++.. .... ...+ ..+.+++ +++ .....+..+.+.+.+..+.. .+++.+||+
T Consensus 2 IlYlHGF~SS~~S~~~Ka~~l~~~-~p~~~~~--~l~-----------~~~P~~a~~~l~~~i~~~~~~~~~~~~~liGS 67 (180)
T PRK04940 2 IIYLHGFDSTSPGNHEKVLQLQFI-DPDVRLI--SYS-----------TLHPKHDMQHLLKEVDKMLQLSDDERPLICGV 67 (180)
T ss_pred EEEeCCCCCCCCccHHHHHhheee-CCCCeEE--ECC-----------CCCHHHHHHHHHHHHHHhhhccCCCCcEEEEe
Confidence 7999999998877 4221 1122 1123333 221 02333334455555554211 257999999
Q ss_pred CcchHHHHHHHhhCccceeeeeeeeccCCCCCCCchhhhhhcccCCchhhhhhhhhhccccCCCccchhhhhhhHHHHhh
Q 024134 93 SFGGLSVALAADKFPHKISVAIFLTAFMPDTKHQPSYVVERFSESIPREERLDTQYSIIDESNPSRMSILFGHKFLTLKL 172 (272)
Q Consensus 93 S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (272)
|+||..|..+|.++. + ..|+++|.+.+.. .+...... ... ...+.+..+.
T Consensus 68 SLGGyyA~~La~~~g--~-~aVLiNPAv~P~~-----~L~~~ig~----------------~~~---y~~~~~~h~~--- 117 (180)
T PRK04940 68 GLGGYWAERIGFLCG--I-RQVIFNPNLFPEE-----NMEGKIDR----------------PEE---YADIATKCVT--- 117 (180)
T ss_pred ChHHHHHHHHHHHHC--C-CEEEECCCCChHH-----HHHHHhCC----------------Ccc---hhhhhHHHHH---
Confidence 999999999999986 3 5578999754321 11111100 000 0001111110
Q ss_pred ccCCChhHHHHHHHhccCCccchHHhhhcccccccccCCceeEEEEeCCCCCccHHHHHHHHhcCCCc-eEEEecCCCcc
Q 024134 173 YQLSPPEDLELAKMLVKPGLLFTDELSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNNPVN-EVMAIKGADHM 251 (272)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~-~~~~~~~~gH~ 251 (272)
++. . ...-..+++..+.|.+.+...+.... .++ +.++.+|+.|-
T Consensus 118 ------------------------eL~----~----~~p~r~~vllq~gDEvLDyr~a~~~y---~~~y~~~v~~GGdH~ 162 (180)
T PRK04940 118 ------------------------NFR----E----KNRDRCLVILSRNDEVLDSQRTAEEL---HPYYEIVWDEEQTHK 162 (180)
T ss_pred ------------------------Hhh----h----cCcccEEEEEeCCCcccCHHHHHHHh---ccCceEEEECCCCCC
Confidence 110 0 00234689999999999887655433 345 78899999997
Q ss_pred cccCCCchHHHHHHHHHHh
Q 024134 252 AMLSKPQPLSDCFSQIAHK 270 (272)
Q Consensus 252 ~~~~~p~~~~~~i~~fl~~ 270 (272)
+ ++=++....|.+|++.
T Consensus 163 f--~~fe~~l~~I~~F~~~ 179 (180)
T PRK04940 163 F--KNISPHLQRIKAFKTL 179 (180)
T ss_pred C--CCHHHHHHHHHHHHhc
Confidence 4 4445677888888753
No 140
>PLN02733 phosphatidylcholine-sterol O-acyltransferase
Probab=99.21 E-value=5.8e-11 Score=93.58 Aligned_cols=94 Identities=16% Similarity=0.210 Sum_probs=69.5
Q ss_pred CcchhHHhhHHHHHhCCCeEEEEcCCCCCCCCccccc-ccchhhchHHHHHHHHHhcCCCcEEEEEeCcchHHHHHHHhh
Q 024134 27 HGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQD-VRSFYEYNEPLLEILASLSADEKVILVGHSFGGLSVALAADK 105 (272)
Q Consensus 27 ~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~-~~~~~~~~~~~~~~i~~l~~~~~~~lvG~S~Gg~~a~~~a~~ 105 (272)
.....|..+++.|.+.||.+ ..|++|+|.+...... ...++++.+.+.++.+.. +.++++|+||||||.+++.++..
T Consensus 105 ~~~~~~~~li~~L~~~GY~~-~~dL~g~gYDwR~~~~~~~~~~~Lk~lIe~~~~~~-g~~kV~LVGHSMGGlva~~fl~~ 182 (440)
T PLN02733 105 DEVYYFHDMIEQLIKWGYKE-GKTLFGFGYDFRQSNRLPETMDGLKKKLETVYKAS-GGKKVNIISHSMGGLLVKCFMSL 182 (440)
T ss_pred chHHHHHHHHHHHHHcCCcc-CCCcccCCCCccccccHHHHHHHHHHHHHHHHHHc-CCCCEEEEEECHhHHHHHHHHHH
Confidence 44577899999999999765 8899999998765321 112334444444444444 67899999999999999999988
Q ss_pred Cccc----eeeeeeeeccCCC
Q 024134 106 FPHK----ISVAIFLTAFMPD 122 (272)
Q Consensus 106 ~p~~----v~~lvl~~~~~~~ 122 (272)
+|+. |+++|.++++...
T Consensus 183 ~p~~~~k~I~~~I~la~P~~G 203 (440)
T PLN02733 183 HSDVFEKYVNSWIAIAAPFQG 203 (440)
T ss_pred CCHhHHhHhccEEEECCCCCC
Confidence 8864 7889999876443
No 141
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=7.6e-10 Score=93.45 Aligned_cols=201 Identities=13% Similarity=0.090 Sum_probs=123.3
Q ss_pred CCCeEEEEecCCCcchhH----HhhHH-HHHhCCCeEEEEcCCCCCCCCcccc-------cccchhhchHHHHHHHHHh-
Q 024134 15 KQKHFVLVHGSNHGAWCW----YKVKP-RLEAAGHRVTAMDLAASGINMKKIQ-------DVRSFYEYNEPLLEILASL- 81 (272)
Q Consensus 15 ~~~~vv~lhG~~~~~~~~----~~~~~-~l~~~g~~v~~~d~~G~G~s~~~~~-------~~~~~~~~~~~~~~~i~~l- 81 (272)
+-|.+|.+||.+++.... -.+.. .....|+.|+.+|.||-|....... .....+|....+..+++..
T Consensus 525 kyPllv~~yGGP~sq~v~~~~~~~~~~~~~s~~g~~v~~vd~RGs~~~G~~~~~~~~~~lG~~ev~D~~~~~~~~~~~~~ 604 (755)
T KOG2100|consen 525 KYPLLVVVYGGPGSQSVTSKFSVDWNEVVVSSRGFAVLQVDGRGSGGYGWDFRSALPRNLGDVEVKDQIEAVKKVLKLPF 604 (755)
T ss_pred CCCEEEEecCCCCcceeeeeEEecHHHHhhccCCeEEEEEcCCCcCCcchhHHHHhhhhcCCcchHHHHHHHHHHHhccc
Confidence 347788899988743221 11222 3446799999999999887654321 2245566666666666554
Q ss_pred cCCCcEEEEEeCcchHHHHHHHhhCccc-eeeeeeeeccCCCCCCCchhhhhhcccCCchhhhhhhhhhccccCCCccch
Q 024134 82 SADEKVILVGHSFGGLSVALAADKFPHK-ISVAIFLTAFMPDTKHQPSYVVERFSESIPREERLDTQYSIIDESNPSRMS 160 (272)
Q Consensus 82 ~~~~~~~lvG~S~Gg~~a~~~a~~~p~~-v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (272)
.+.+++.+.|+|.||.+++.++...|+. ++..+.++|..... ........+.
T Consensus 605 iD~~ri~i~GwSyGGy~t~~~l~~~~~~~fkcgvavaPVtd~~-~yds~~tery-------------------------- 657 (755)
T KOG2100|consen 605 IDRSRVAIWGWSYGGYLTLKLLESDPGDVFKCGVAVAPVTDWL-YYDSTYTERY-------------------------- 657 (755)
T ss_pred ccHHHeEEeccChHHHHHHHHhhhCcCceEEEEEEecceeeee-eecccccHhh--------------------------
Confidence 2557899999999999999999999854 55559999874322 1100000000
Q ss_pred hhhhhhHHHHhhccCCChhHHHHHHHhccCCccchHHhhhcccccccccCCce-eEEEEeCCCCCccHHHHHHHHhcCC-
Q 024134 161 ILFGHKFLTLKLYQLSPPEDLELAKMLVKPGLLFTDELSKANEFSNEGYGSVK-RDFVGSDKDNCIPKEFQQWMIQNNP- 238 (272)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P-~l~i~g~~D~~~~~~~~~~~~~~~~- 238 (272)
......... .+.+.........++.| .|++||+.|..++.+.+..+.+.+.
T Consensus 658 ------------mg~p~~~~~---------------~y~e~~~~~~~~~~~~~~~LliHGt~DdnVh~q~s~~~~~aL~~ 710 (755)
T KOG2100|consen 658 ------------MGLPSENDK---------------GYEESSVSSPANNIKTPKLLLIHGTEDDNVHFQQSAILIKALQN 710 (755)
T ss_pred ------------cCCCccccc---------------hhhhccccchhhhhccCCEEEEEcCCcCCcCHHHHHHHHHHHHH
Confidence 000000000 01111112222223445 4999999999998887777765542
Q ss_pred ---CceEEEecCCCcccccCCC-chHHHHHHHHHH
Q 024134 239 ---VNEVMAIKGADHMAMLSKP-QPLSDCFSQIAH 269 (272)
Q Consensus 239 ---~~~~~~~~~~gH~~~~~~p-~~~~~~i~~fl~ 269 (272)
.++..++|+.+|.+..-.. ..+...+..|+.
T Consensus 711 ~gv~~~~~vypde~H~is~~~~~~~~~~~~~~~~~ 745 (755)
T KOG2100|consen 711 AGVPFRLLVYPDENHGISYVEVISHLYEKLDRFLR 745 (755)
T ss_pred CCCceEEEEeCCCCcccccccchHHHHHHHHHHHH
Confidence 3688999999999876443 556677777776
No 142
>PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A.
Probab=99.18 E-value=4.1e-11 Score=90.60 Aligned_cols=104 Identities=16% Similarity=0.072 Sum_probs=61.5
Q ss_pred cCCCeEEEEecCCCcchh--------------H----HhhHHHHHhCCCeEEEEcCCCCCCCCccccc----ccchhhch
Q 024134 14 KKQKHFVLVHGSNHGAWC--------------W----YKVKPRLEAAGHRVTAMDLAASGINMKKIQD----VRSFYEYN 71 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~--------------~----~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~----~~~~~~~~ 71 (272)
+.-|.||++||-+++.+. + ..+...|+++||-|+++|.+|+|+....... .++...++
T Consensus 113 ~p~PAVL~lHgHg~~Ke~~~g~~gv~~~~~~~~~~~~~~~g~~LAk~GYVvla~D~~g~GER~~~e~~~~~~~~~~~~la 192 (390)
T PF12715_consen 113 GPFPAVLCLHGHGGGKEKMAGEDGVSPDLKDDYDDPKQDYGDQLAKRGYVVLAPDALGFGERGDMEGAAQGSNYDCQALA 192 (390)
T ss_dssp S-EEEEEEE--TT--HHHHCT---SSGCG--STTSTTT-HHHHHHTTTSEEEEE--TTSGGG-SSCCCTTTTS--HHHHH
T ss_pred CCCCEEEEeCCCCCCcccccCCcccccccchhhccccccHHHHHHhCCCEEEEEccccccccccccccccccchhHHHHH
Confidence 455799999998766532 1 1357889999999999999999987653321 11111111
Q ss_pred ---------------HHHHHHHHHh-----cCCCcEEEEEeCcchHHHHHHHhhCccceeeeeeeec
Q 024134 72 ---------------EPLLEILASL-----SADEKVILVGHSFGGLSVALAADKFPHKISVAIFLTA 118 (272)
Q Consensus 72 ---------------~~~~~~i~~l-----~~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~ 118 (272)
-+....++.+ -+.++|.++|+||||..++.+|+.. ++|+..|..+.
T Consensus 193 ~~~l~lG~S~~G~~~~ddmr~lDfL~slpeVD~~RIG~~GfSmGg~~a~~LaALD-dRIka~v~~~~ 258 (390)
T PF12715_consen 193 RNLLMLGRSLAGLMAWDDMRALDFLASLPEVDPDRIGCMGFSMGGYRAWWLAALD-DRIKATVANGY 258 (390)
T ss_dssp HHHHHTT--HHHHHHHHHHHHHHHHCT-TTEEEEEEEEEEEGGGHHHHHHHHHH--TT--EEEEES-
T ss_pred HHHHHcCcCHHHHHHHHHHHHHHHHhcCcccCccceEEEeecccHHHHHHHHHcc-hhhHhHhhhhh
Confidence 1222344444 1457899999999999999999776 57888776654
No 143
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=99.14 E-value=6.6e-10 Score=80.91 Aligned_cols=108 Identities=18% Similarity=0.166 Sum_probs=71.6
Q ss_pred ccCCCeEEEEecCCCcchhH----HhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHh---cCCC
Q 024134 13 AKKQKHFVLVHGSNHGAWCW----YKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASL---SADE 85 (272)
Q Consensus 13 ~~~~~~vv~lhG~~~~~~~~----~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l---~~~~ 85 (272)
.+.+..+||+||+..+...- ..+...+.-.| .++.+.||+.|.-..-.....+...-...+.++|+.+ .+.+
T Consensus 15 ~~~~~vlvfVHGyn~~f~~a~~r~aql~~~~~~~~-~~i~FsWPS~g~~~~Y~~d~~~a~~s~~~l~~~L~~L~~~~~~~ 93 (233)
T PF05990_consen 15 SPDKEVLVFVHGYNNSFEDALRRAAQLAHDLGFPG-VVILFSWPSDGSLLGYFYDRESARFSGPALARFLRDLARAPGIK 93 (233)
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCc-eEEEEEcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhccCCc
Confidence 46788999999998876542 22223332232 7999999998863222111123444455666666666 2578
Q ss_pred cEEEEEeCcchHHHHHHHhh----Cc-----cceeeeeeeeccCC
Q 024134 86 KVILVGHSFGGLSVALAADK----FP-----HKISVAIFLTAFMP 121 (272)
Q Consensus 86 ~~~lvG~S~Gg~~a~~~a~~----~p-----~~v~~lvl~~~~~~ 121 (272)
++++++||||+.+.+.+... .+ .++..+|+++|-.+
T Consensus 94 ~I~ilaHSMG~rv~~~aL~~l~~~~~~~~~~~~~~~viL~ApDid 138 (233)
T PF05990_consen 94 RIHILAHSMGNRVLLEALRQLASEGERPDVKARFDNVILAAPDID 138 (233)
T ss_pred eEEEEEeCchHHHHHHHHHHHHhcccchhhHhhhheEEEECCCCC
Confidence 99999999999998888654 11 35788888887543
No 144
>PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases. Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process
Probab=99.06 E-value=3.2e-08 Score=74.71 Aligned_cols=45 Identities=13% Similarity=0.143 Sum_probs=35.6
Q ss_pred CCceeEEEEeCCCCCccHHHHHHHHhcC-----CCceEEEecCCCccccc
Q 024134 210 GSVKRDFVGSDKDNCIPKEFQQWMIQNN-----PVNEVMAIKGADHMAML 254 (272)
Q Consensus 210 ~~~P~l~i~g~~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~gH~~~~ 254 (272)
.+.|+++.+|..|.++|....+.+.+.+ .+++++.+++.+|....
T Consensus 218 P~~Pv~i~~g~~D~vvP~~~~~~l~~~~c~~G~a~V~~~~~~~~~H~~~~ 267 (290)
T PF03583_consen 218 PTVPVLIYQGTADEVVPPADTDALVAKWCAAGGADVEYVRYPGGGHLGAA 267 (290)
T ss_pred CCCCEEEEecCCCCCCChHHHHHHHHHHHHcCCCCEEEEecCCCChhhhh
Confidence 3789999999999999988776665433 35788888999998643
No 145
>KOG3847 consensus Phospholipase A2 (platelet-activating factor acetylhydrolase in humans) [Lipid transport and metabolism]
Probab=99.02 E-value=7.9e-09 Score=75.49 Aligned_cols=105 Identities=21% Similarity=0.283 Sum_probs=71.8
Q ss_pred CCCeEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCCCCCCCCc------cccc----------------c-c-----c
Q 024134 15 KQKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMK------KIQD----------------V-R-----S 66 (272)
Q Consensus 15 ~~~~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~------~~~~----------------~-~-----~ 66 (272)
+-|.+||-||++++...|..+.-.|+.+||-|.+++.|-+..+.. +..+ . . .
T Consensus 117 k~PvvvFSHGLggsRt~YSa~c~~LAShG~VVaavEHRD~SA~~Ty~~~~~~~n~~lveq~~~ir~v~~~ekef~irNeq 196 (399)
T KOG3847|consen 117 KYPVVVFSHGLGGSRTLYSAYCTSLASHGFVVAAVEHRDRSACWTYVLKEKHENEPLVEQWIKIRLVEANEKEFHIRNEQ 196 (399)
T ss_pred CccEEEEecccccchhhHHHHhhhHhhCceEEEEeecccCcceeEEEecccccCCcccccceEeeeeccCceeEEeeCHH
Confidence 348999999999999999999999999999999999987654421 0000 0 0 0
Q ss_pred hhhchHH---HHHHHHHhc-----------------------CCCcEEEEEeCcchHHHHHHHhhCccceeeeeeeeccC
Q 024134 67 FYEYNEP---LLEILASLS-----------------------ADEKVILVGHSFGGLSVALAADKFPHKISVAIFLTAFM 120 (272)
Q Consensus 67 ~~~~~~~---~~~~i~~l~-----------------------~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~ 120 (272)
...-++. ...+|+.+. ...++.++|||+||..++.....+. .+++.|+++...
T Consensus 197 v~~R~~Ec~~aL~il~~i~~g~~~~~~L~g~~~~~~~~K~nl~~s~~aViGHSFGgAT~i~~ss~~t-~FrcaI~lD~WM 275 (399)
T KOG3847|consen 197 VGQRAQECQKALKILEQINDGGTPDNVLPGNNSDLEQLKGNLDTSQAAVIGHSFGGATSIASSSSHT-DFRCAIALDAWM 275 (399)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCchhcccCccccHHHHhcchhhhhhhheeccccchhhhhhhcccc-ceeeeeeeeeee
Confidence 0111122 222333320 2236889999999999888876654 588888888763
No 146
>COG4814 Uncharacterized protein with an alpha/beta hydrolase fold [General function prediction only]
Probab=98.97 E-value=1.4e-07 Score=67.12 Aligned_cols=104 Identities=20% Similarity=0.201 Sum_probs=74.4
Q ss_pred eEEEEecCCCcchhHHhhHHHHHhCCC-----eEEEEcCCCC----CCCCccc----------ccccchhhchHHHHHHH
Q 024134 18 HFVLVHGSNHGAWCWYKVKPRLEAAGH-----RVTAMDLAAS----GINMKKI----------QDVRSFYEYNEPLLEIL 78 (272)
Q Consensus 18 ~vv~lhG~~~~~~~~~~~~~~l~~~g~-----~v~~~d~~G~----G~s~~~~----------~~~~~~~~~~~~~~~~i 78 (272)
|.|||||.+++......++.+|..++- =++.+|--|- |.=++.. ....+..++...+..++
T Consensus 47 PTIfIhGsgG~asS~~~Mv~ql~~~~~~~~e~Lt~~V~~dgslk~tGk~~Kd~~nP~I~~gfe~n~~s~~~~s~wlk~~m 126 (288)
T COG4814 47 PTIFIHGSGGTASSLNGMVNQLLPDYKAGTESLTMTVDVDGSLKVTGKISKDAKNPIIEFGFEDNTASGLDQSKWLKKAM 126 (288)
T ss_pred ceEEEecCCCChhHHHHHHHHhhhcccccccceEEEEcCCCcEEEeeeecccCCCCeEEEEEecCcCchhhHHHHHHHHH
Confidence 789999999999999999999986631 2455565551 1101100 12235566777777777
Q ss_pred HHh---cCCCcEEEEEeCcchHHHHHHHhhCcc-----ceeeeeeeeccCC
Q 024134 79 ASL---SADEKVILVGHSFGGLSVALAADKFPH-----KISVAIFLTAFMP 121 (272)
Q Consensus 79 ~~l---~~~~~~~lvG~S~Gg~~a~~~a~~~p~-----~v~~lvl~~~~~~ 121 (272)
..| .+..++.+|||||||.-...++..+.. .+.++|.++++..
T Consensus 127 syL~~~Y~i~k~n~VGhSmGg~~~~~Y~~~yg~dks~P~lnK~V~l~gpfN 177 (288)
T COG4814 127 SYLQKHYNIPKFNAVGHSMGGLGLTYYMIDYGDDKSLPPLNKLVSLAGPFN 177 (288)
T ss_pred HHHHHhcCCceeeeeeeccccHHHHHHHHHhcCCCCCcchhheEEeccccc
Confidence 776 478899999999999988888877643 3889999987644
No 147
>KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=98.96 E-value=4e-08 Score=68.32 Aligned_cols=102 Identities=21% Similarity=0.175 Sum_probs=75.1
Q ss_pred CCeEEEEecCCCcchh---HHhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhc---CCCcEEE
Q 024134 16 QKHFVLVHGSNHGAWC---WYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLS---ADEKVIL 89 (272)
Q Consensus 16 ~~~vv~lhG~~~~~~~---~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~---~~~~~~l 89 (272)
+..|||+-|++..--. -..+...|-+.+|.++-+.++.+-. --...++.+-++|+..+++++. ....+++
T Consensus 36 ~~~vvfiGGLgdgLl~~~y~~~L~~~lde~~wslVq~q~~Ssy~----G~Gt~slk~D~edl~~l~~Hi~~~~fSt~vVL 111 (299)
T KOG4840|consen 36 SVKVVFIGGLGDGLLICLYTTMLNRYLDENSWSLVQPQLRSSYN----GYGTFSLKDDVEDLKCLLEHIQLCGFSTDVVL 111 (299)
T ss_pred EEEEEEEcccCCCccccccHHHHHHHHhhccceeeeeecccccc----ccccccccccHHHHHHHHHHhhccCcccceEE
Confidence 3568999998866533 4677888888899999998763211 1122588888999999999882 2348999
Q ss_pred EEeCcchHHHHHHHh--hCccceeeeeeeeccCC
Q 024134 90 VGHSFGGLSVALAAD--KFPHKISVAIFLTAFMP 121 (272)
Q Consensus 90 vG~S~Gg~~a~~~a~--~~p~~v~~lvl~~~~~~ 121 (272)
+|||.|+.=.+.+.. ..+..++..|+.+|...
T Consensus 112 ~GhSTGcQdi~yYlTnt~~~r~iraaIlqApVSD 145 (299)
T KOG4840|consen 112 VGHSTGCQDIMYYLTNTTKDRKIRAAILQAPVSD 145 (299)
T ss_pred EecCccchHHHHHHHhccchHHHHHHHHhCccch
Confidence 999999997777762 24566888888888643
No 148
>PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A ....
Probab=98.95 E-value=6.7e-08 Score=77.59 Aligned_cols=107 Identities=14% Similarity=0.164 Sum_probs=69.8
Q ss_pred cCCCeEEEEecCCCcchhHHhhHH-------------------HHHhCCCeEEEEcCC-CCCCCCccccc--ccchhhch
Q 024134 14 KKQKHFVLVHGSNHGAWCWYKVKP-------------------RLEAAGHRVTAMDLA-ASGINMKKIQD--VRSFYEYN 71 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~~~~~~~-------------------~l~~~g~~v~~~d~~-G~G~s~~~~~~--~~~~~~~~ 71 (272)
.+.|.||++.|.++++..+-.+.+ .+. +-.+++.+|.| |-|.|...... ..+.++.+
T Consensus 38 ~~~Pl~~wlnGGPG~SS~~g~f~e~GP~~~~~~~~~~l~~n~~sW~-~~an~l~iD~PvGtGfS~~~~~~~~~~~~~~~a 116 (415)
T PF00450_consen 38 EDDPLILWLNGGPGCSSMWGLFGENGPFRINPDGPYTLEDNPYSWN-KFANLLFIDQPVGTGFSYGNDPSDYVWNDDQAA 116 (415)
T ss_dssp CSS-EEEEEE-TTTB-THHHHHCTTSSEEEETTSTSEEEE-TT-GG-GTSEEEEE--STTSTT-EESSGGGGS-SHHHHH
T ss_pred CCccEEEEecCCceeccccccccccCceEEeecccccccccccccc-cccceEEEeecCceEEeeccccccccchhhHHH
Confidence 567999999999998887633211 111 23689999955 89998765442 34677888
Q ss_pred HHHHHHHHHh------cCCCcEEEEEeCcchHHHHHHHhh----C------ccceeeeeeeeccCC
Q 024134 72 EPLLEILASL------SADEKVILVGHSFGGLSVALAADK----F------PHKISVAIFLTAFMP 121 (272)
Q Consensus 72 ~~~~~~i~~l------~~~~~~~lvG~S~Gg~~a~~~a~~----~------p~~v~~lvl~~~~~~ 121 (272)
+++.++|+.. -...+++|.|-|.||..+-.+|.. . +-.++++++.++...
T Consensus 117 ~~~~~fl~~f~~~~p~~~~~~~yi~GESYgG~yvP~~a~~i~~~~~~~~~~~inLkGi~IGng~~d 182 (415)
T PF00450_consen 117 EDLYEFLQQFFQKFPEYRSNPLYIAGESYGGHYVPALASYILQQNKKGDQPKINLKGIAIGNGWID 182 (415)
T ss_dssp HHHHHHHHHHHHHSGGGTTSEEEEEEETTHHHHHHHHHHHHHHHTCC--STTSEEEEEEEESE-SB
T ss_pred HHHHHHHHHhhhhhhhccCCCEEEEccccccccchhhHHhhhhccccccccccccccceecCcccc
Confidence 8888888765 145689999999999876655543 3 235889999888653
No 149
>COG4099 Predicted peptidase [General function prediction only]
Probab=98.93 E-value=2.2e-08 Score=72.70 Aligned_cols=37 Identities=24% Similarity=0.411 Sum_probs=34.1
Q ss_pred CCCcEEEEEeCcchHHHHHHHhhCccceeeeeeeecc
Q 024134 83 ADEKVILVGHSFGGLSVALAADKFPHKISVAIFLTAF 119 (272)
Q Consensus 83 ~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~ 119 (272)
+..+++++|.|+||.-++.++.++|+.+.+.+++++.
T Consensus 267 D~sRIYviGlSrG~~gt~al~~kfPdfFAaa~~iaG~ 303 (387)
T COG4099 267 DRSRIYVIGLSRGGFGTWALAEKFPDFFAAAVPIAGG 303 (387)
T ss_pred ccceEEEEeecCcchhhHHHHHhCchhhheeeeecCC
Confidence 4568999999999999999999999999999999874
No 150
>KOG1553 consensus Predicted alpha/beta hydrolase BAT5 [General function prediction only]
Probab=98.90 E-value=9.1e-09 Score=76.25 Aligned_cols=99 Identities=20% Similarity=0.286 Sum_probs=68.4
Q ss_pred CCeEEEEecCCCcchhHH-hhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHH-HHHHHh-cCCCcEEEEEe
Q 024134 16 QKHFVLVHGSNHGAWCWY-KVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLL-EILASL-SADEKVILVGH 92 (272)
Q Consensus 16 ~~~vv~lhG~~~~~~~~~-~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~-~~i~~l-~~~~~~~lvG~ 92 (272)
+..|||.-|..+ .|+ ..+..-++.||.|+.+++||++.|.+.+....+... ++.+. -.|..+ -..+.+++.||
T Consensus 243 q~LvIC~EGNAG---FYEvG~m~tP~~lgYsvLGwNhPGFagSTG~P~p~n~~nA-~DaVvQfAI~~Lgf~~edIilygW 318 (517)
T KOG1553|consen 243 QDLVICFEGNAG---FYEVGVMNTPAQLGYSVLGWNHPGFAGSTGLPYPVNTLNA-ADAVVQFAIQVLGFRQEDIILYGW 318 (517)
T ss_pred ceEEEEecCCcc---ceEeeeecChHHhCceeeccCCCCccccCCCCCcccchHH-HHHHHHHHHHHcCCCccceEEEEe
Confidence 345667766533 332 122222346899999999999999887654333333 33333 344445 24578999999
Q ss_pred CcchHHHHHHHhhCccceeeeeeeecc
Q 024134 93 SFGGLSVALAADKFPHKISVAIFLTAF 119 (272)
Q Consensus 93 S~Gg~~a~~~a~~~p~~v~~lvl~~~~ 119 (272)
|.||.-+..+|..||+ |+++||-+.+
T Consensus 319 SIGGF~~~waAs~YPd-VkavvLDAtF 344 (517)
T KOG1553|consen 319 SIGGFPVAWAASNYPD-VKAVVLDATF 344 (517)
T ss_pred ecCCchHHHHhhcCCC-ceEEEeecch
Confidence 9999999999999997 9999877664
No 151
>KOG3253 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=98.89 E-value=3.8e-08 Score=78.21 Aligned_cols=176 Identities=14% Similarity=0.080 Sum_probs=109.4
Q ss_pred CCCeEEEEecCC---CcchhHHhhHHHHHhCC--CeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHh-------c
Q 024134 15 KQKHFVLVHGSN---HGAWCWYKVKPRLEAAG--HRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASL-------S 82 (272)
Q Consensus 15 ~~~~vv~lhG~~---~~~~~~~~~~~~l~~~g--~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l-------~ 82 (272)
..|.++++||.+ .+++.+..+...|...| ..+.++|++.--. ..++...++.+..+.+.. .
T Consensus 175 ~spl~i~aps~p~ap~tSd~~~~wqs~lsl~gevvev~tfdl~n~ig-------G~nI~h~ae~~vSf~r~kvlei~gef 247 (784)
T KOG3253|consen 175 ASPLAIKAPSTPLAPKTSDRMWSWQSRLSLKGEVVEVPTFDLNNPIG-------GANIKHAAEYSVSFDRYKVLEITGEF 247 (784)
T ss_pred CCceEEeccCCCCCCccchHHHhHHHHHhhhceeeeeccccccCCCC-------CcchHHHHHHHHHHhhhhhhhhhccC
Confidence 357899999988 22222223333343333 4566777763111 135555566655555522 2
Q ss_pred CCCcEEEEEeCcchHHHHHHHhhCc-cceeeeeeeeccCCCCCCCchhhhhhcccCCchhhhhhhhhhccccCCCccchh
Q 024134 83 ADEKVILVGHSFGGLSVALAADKFP-HKISVAIFLTAFMPDTKHQPSYVVERFSESIPREERLDTQYSIIDESNPSRMSI 161 (272)
Q Consensus 83 ~~~~~~lvG~S~Gg~~a~~~a~~~p-~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (272)
...+++|+|.|||+.++.+...... ..|+++|+++=+........ .. .
T Consensus 248 pha~IiLvGrsmGAlVachVSpsnsdv~V~~vVCigypl~~vdgpr-----gi---------r----------------- 296 (784)
T KOG3253|consen 248 PHAPIILVGRSMGALVACHVSPSNSDVEVDAVVCIGYPLDTVDGPR-----GI---------R----------------- 296 (784)
T ss_pred CCCceEEEecccCceeeEEeccccCCceEEEEEEecccccCCCccc-----CC---------c-----------------
Confidence 5678999999999988888876543 24888888875432211110 00 0
Q ss_pred hhhhhHHHHhhccCCChhHHHHHHHhccCCccchHHhhhcccccccccCCceeEEEEeCCCCCccHHHHHHHHhcCC-Cc
Q 024134 162 LFGHKFLTLKLYQLSPPEDLELAKMLVKPGLLFTDELSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNNP-VN 240 (272)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~-~~ 240 (272)
++. +-.++.|+||+.|.+|..+++...+.+.++.. ..
T Consensus 297 ---DE~---------------------------------------Lldmk~PVLFV~Gsnd~mcspn~ME~vreKMqA~~ 334 (784)
T KOG3253|consen 297 ---DEA---------------------------------------LLDMKQPVLFVIGSNDHMCSPNSMEEVREKMQAEV 334 (784)
T ss_pred ---chh---------------------------------------hHhcCCceEEEecCCcccCCHHHHHHHHHHhhccc
Confidence 000 00128899999999999999999998888774 56
Q ss_pred eEEEecCCCcccccCC---------CchHHHHHHHHHHh
Q 024134 241 EVMAIKGADHMAMLSK---------PQPLSDCFSQIAHK 270 (272)
Q Consensus 241 ~~~~~~~~gH~~~~~~---------p~~~~~~i~~fl~~ 270 (272)
+++++.+++|.+-.-. -.++...+.++|.+
T Consensus 335 elhVI~~adhsmaipk~k~esegltqseVd~~i~~aI~e 373 (784)
T KOG3253|consen 335 ELHVIGGADHSMAIPKRKVESEGLTQSEVDSAIAQAIKE 373 (784)
T ss_pred eEEEecCCCccccCCccccccccccHHHHHHHHHHHHHH
Confidence 8999999999876543 13455555555544
No 152
>PLN02606 palmitoyl-protein thioesterase
Probab=98.86 E-value=3.6e-07 Score=67.68 Aligned_cols=102 Identities=16% Similarity=0.074 Sum_probs=66.9
Q ss_pred CCCeEEEEecCC--CcchhHHhhHHHHHh-CCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhc-CCCcEEEE
Q 024134 15 KQKHFVLVHGSN--HGAWCWYKVKPRLEA-AGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLS-ADEKVILV 90 (272)
Q Consensus 15 ~~~~vv~lhG~~--~~~~~~~~~~~~l~~-~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~-~~~~~~lv 90 (272)
...|||+.||+| .+......+.+.+.+ .|+.+.++. .|-+.. ..-.....+.++.+.+.+.... -..-+++|
T Consensus 25 ~~~PvViwHGlgD~~~~~~~~~~~~~i~~~~~~pg~~v~-ig~~~~---~s~~~~~~~Qv~~vce~l~~~~~L~~G~naI 100 (306)
T PLN02606 25 LSVPFVLFHGFGGECSNGKVSNLTQFLINHSGYPGTCVE-IGNGVQ---DSLFMPLRQQASIACEKIKQMKELSEGYNIV 100 (306)
T ss_pred CCCCEEEECCCCcccCCchHHHHHHHHHhCCCCCeEEEE-ECCCcc---cccccCHHHHHHHHHHHHhcchhhcCceEEE
Confidence 456999999999 555567777777752 366665555 232221 1111234444554444444321 12459999
Q ss_pred EeCcchHHHHHHHhhCcc--ceeeeeeeeccC
Q 024134 91 GHSFGGLSVALAADKFPH--KISVAIFLTAFM 120 (272)
Q Consensus 91 G~S~Gg~~a~~~a~~~p~--~v~~lvl~~~~~ 120 (272)
|+|.||.++-.++.+.|+ .|+.+|.++++.
T Consensus 101 GfSQGglflRa~ierc~~~p~V~nlISlggph 132 (306)
T PLN02606 101 AESQGNLVARGLIEFCDNAPPVINYVSLGGPH 132 (306)
T ss_pred EEcchhHHHHHHHHHCCCCCCcceEEEecCCc
Confidence 999999999999999987 499999998753
No 153
>PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins.
Probab=98.86 E-value=2.8e-07 Score=68.16 Aligned_cols=58 Identities=16% Similarity=0.117 Sum_probs=48.2
Q ss_pred CceeEEEEeCCCCCccHHHHHHHHhcCC----CceEEEecCCCccccc-CCCchHHHHHHHHH
Q 024134 211 SVKRDFVGSDKDNCIPKEFQQWMIQNNP----VNEVMAIKGADHMAML-SKPQPLSDCFSQIA 268 (272)
Q Consensus 211 ~~P~l~i~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~gH~~~~-~~p~~~~~~i~~fl 268 (272)
.+|-++++++.|.+++.+..++..+... +++...++++.|..|+ ++|++..+.+.+|+
T Consensus 178 ~~p~lylYS~~D~l~~~~~ve~~~~~~~~~G~~V~~~~f~~S~HV~H~r~~p~~Y~~~v~~fw 240 (240)
T PF05705_consen 178 RCPRLYLYSKADPLIPWRDVEEHAEEARRKGWDVRAEKFEDSPHVAHLRKHPDRYWRAVDEFW 240 (240)
T ss_pred CCCeEEecCCCCcCcCHHHHHHHHHHHHHcCCeEEEecCCCCchhhhcccCHHHHHHHHHhhC
Confidence 6899999999999999987776665432 3677888999999887 68999999999884
No 154
>PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases.
Probab=98.84 E-value=2.3e-08 Score=72.29 Aligned_cols=88 Identities=23% Similarity=0.208 Sum_probs=51.4
Q ss_pred CCCeEEEEecCCCcchhHHhhHHHHHhC--CCeEEEEcCCCCCCCCcccccccchhhchHH----HHHHHHHhcC-CCcE
Q 024134 15 KQKHFVLVHGSNHGAWCWYKVKPRLEAA--GHRVTAMDLAASGINMKKIQDVRSFYEYNEP----LLEILASLSA-DEKV 87 (272)
Q Consensus 15 ~~~~vv~lhG~~~~~~~~~~~~~~l~~~--g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~----~~~~i~~l~~-~~~~ 87 (272)
+...|||+||+.++...|..+...+... .+.-..+...++....... ..+++..++. +.+.++.... ..++
T Consensus 3 ~~hLvV~vHGL~G~~~d~~~~~~~l~~~~~~~~~~~i~~~~~~~n~~~T--~~gI~~~g~rL~~eI~~~~~~~~~~~~~I 80 (217)
T PF05057_consen 3 PVHLVVFVHGLWGNPADMRYLKNHLEKIPEDLPNARIVVLGYSNNEFKT--FDGIDVCGERLAEEILEHIKDYESKIRKI 80 (217)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHHhhhhcchhhhhhhccccccccc--chhhHHHHHHHHHHHHHhccccccccccc
Confidence 3457999999999999998887777651 1221122222222111111 1244444444 4444443322 2589
Q ss_pred EEEEeCcchHHHHHHHh
Q 024134 88 ILVGHSFGGLSVALAAD 104 (272)
Q Consensus 88 ~lvG~S~Gg~~a~~~a~ 104 (272)
.+|||||||.++-.+..
T Consensus 81 sfIgHSLGGli~r~al~ 97 (217)
T PF05057_consen 81 SFIGHSLGGLIARYALG 97 (217)
T ss_pred eEEEecccHHHHHHHHH
Confidence 99999999998876654
No 155
>COG1075 LipA Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=98.84 E-value=1.4e-08 Score=78.31 Aligned_cols=102 Identities=25% Similarity=0.260 Sum_probs=77.5
Q ss_pred CCeEEEEecCCCcchhHHhhHHHHHhCCCe---EEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcCCCcEEEEEe
Q 024134 16 QKHFVLVHGSNHGAWCWYKVKPRLEAAGHR---VTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSADEKVILVGH 92 (272)
Q Consensus 16 ~~~vv~lhG~~~~~~~~~~~~~~l~~~g~~---v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~lvG~ 92 (272)
.-+++++||++.+...|..+...+...|+. ++.+++++- ....+ .....+.+...+.+.+... +.+++.++||
T Consensus 59 ~~pivlVhG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~--~~~~~~ql~~~V~~~l~~~-ga~~v~LigH 134 (336)
T COG1075 59 KEPIVLVHGLGGGYGNFLPLDYRLAILGWLTNGVYAFELSGG-DGTYS--LAVRGEQLFAYVDEVLAKT-GAKKVNLIGH 134 (336)
T ss_pred CceEEEEccCcCCcchhhhhhhhhcchHHHhccccccccccc-CCCcc--ccccHHHHHHHHHHHHhhc-CCCceEEEee
Confidence 349999999988888888887777777777 888888765 11111 1124455555555666655 7799999999
Q ss_pred CcchHHHHHHHhhCc--cceeeeeeeeccCC
Q 024134 93 SFGGLSVALAADKFP--HKISVAIFLTAFMP 121 (272)
Q Consensus 93 S~Gg~~a~~~a~~~p--~~v~~lvl~~~~~~ 121 (272)
|+||..+..++...+ .+|+.++.++++-.
T Consensus 135 S~GG~~~ry~~~~~~~~~~V~~~~tl~tp~~ 165 (336)
T COG1075 135 SMGGLDSRYYLGVLGGANRVASVVTLGTPHH 165 (336)
T ss_pred cccchhhHHHHhhcCccceEEEEEEeccCCC
Confidence 999999999999888 88999999998643
No 156
>PF04301 DUF452: Protein of unknown function (DUF452); InterPro: IPR007398 This is a family of uncharacterised proteins.
Probab=98.80 E-value=2.5e-07 Score=65.44 Aligned_cols=81 Identities=15% Similarity=0.134 Sum_probs=55.7
Q ss_pred cCCCeEEEEecCCCcchhHHhhHHHHHhCCCe-EEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcCCCcEEEEEe
Q 024134 14 KKQKHFVLVHGSNHGAWCWYKVKPRLEAAGHR-VTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSADEKVILVGH 92 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~~~~~~~~l~~~g~~-v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~lvG~ 92 (272)
.++..|||..|+|.+...+.++.. ..++. ++++|+|.. +++. + + ...+.++|||+
T Consensus 9 ~~~~LilfF~GWg~d~~~f~hL~~---~~~~D~l~~yDYr~l-----------~~d~---~----~---~~y~~i~lvAW 64 (213)
T PF04301_consen 9 NGKELILFFAGWGMDPSPFSHLIL---PENYDVLICYDYRDL-----------DFDF---D----L---SGYREIYLVAW 64 (213)
T ss_pred CCCeEEEEEecCCCChHHhhhccC---CCCccEEEEecCccc-----------cccc---c----c---ccCceEEEEEE
Confidence 345799999999999998877631 23354 566777621 1110 1 1 15589999999
Q ss_pred CcchHHHHHHHhhCccceeeeeeeeccC
Q 024134 93 SFGGLSVALAADKFPHKISVAIFLTAFM 120 (272)
Q Consensus 93 S~Gg~~a~~~a~~~p~~v~~lvl~~~~~ 120 (272)
|||-++|..+....| ++..|.+++..
T Consensus 65 SmGVw~A~~~l~~~~--~~~aiAINGT~ 90 (213)
T PF04301_consen 65 SMGVWAANRVLQGIP--FKRAIAINGTP 90 (213)
T ss_pred eHHHHHHHHHhccCC--cceeEEEECCC
Confidence 999999988876543 66777777654
No 157
>COG3150 Predicted esterase [General function prediction only]
Probab=98.73 E-value=2.9e-07 Score=61.20 Aligned_cols=89 Identities=17% Similarity=0.201 Sum_probs=63.0
Q ss_pred EEEEecCCCcchhHHhh--HHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcCCCcEEEEEeCcch
Q 024134 19 FVLVHGSNHGAWCWYKV--KPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSADEKVILVGHSFGG 96 (272)
Q Consensus 19 vv~lhG~~~~~~~~~~~--~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~lvG~S~Gg 96 (272)
||++||+.+|+...... ...+... .+.+.+ |..... .+....++.+..++... +.+.+.++|.|+||
T Consensus 2 ilYlHGFnSSP~shka~l~~q~~~~~-~~~i~y-------~~p~l~--h~p~~a~~ele~~i~~~-~~~~p~ivGssLGG 70 (191)
T COG3150 2 ILYLHGFNSSPGSHKAVLLLQFIDED-VRDIEY-------STPHLP--HDPQQALKELEKAVQEL-GDESPLIVGSSLGG 70 (191)
T ss_pred eEEEecCCCCcccHHHHHHHHHHhcc-ccceee-------ecCCCC--CCHHHHHHHHHHHHHHc-CCCCceEEeecchH
Confidence 89999999988887543 2334332 222222 211111 57888999999999999 77779999999999
Q ss_pred HHHHHHHhhCccceeeeeeeeccCC
Q 024134 97 LSVALAADKFPHKISVAIFLTAFMP 121 (272)
Q Consensus 97 ~~a~~~a~~~p~~v~~lvl~~~~~~ 121 (272)
..|..++.++. +++ |+++|...
T Consensus 71 Y~At~l~~~~G--ira-v~~NPav~ 92 (191)
T COG3150 71 YYATWLGFLCG--IRA-VVFNPAVR 92 (191)
T ss_pred HHHHHHHHHhC--Chh-hhcCCCcC
Confidence 99999998875 444 44677643
No 158
>KOG1551 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.73 E-value=9.1e-07 Score=63.44 Aligned_cols=233 Identities=13% Similarity=0.097 Sum_probs=120.8
Q ss_pred EEEEecCCCcchhHH-hhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHH--------HHHHHHHh-----cCC
Q 024134 19 FVLVHGSNHGAWCWY-KVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEP--------LLEILASL-----SAD 84 (272)
Q Consensus 19 vv~lhG~~~~~~~~~-~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~--------~~~~i~~l-----~~~ 84 (272)
-+++-|-|.+...=+ .+...+.++|...+.+.-|-+|....+..-...++. +.| |.+..+.. .+.
T Consensus 116 OG~~a~tgdh~y~rr~~L~~p~~k~~i~tmvle~pfYgqr~p~~q~~~~Le~-vtDlf~mG~A~I~E~~~lf~Ws~~~g~ 194 (371)
T KOG1551|consen 116 CLSWALTGDHVYTRRLVLSKPINKREIATMVLEKPFYGQRVPEEQIIHMLEY-VTDLFKMGRATIQEFVKLFTWSSADGL 194 (371)
T ss_pred eEEEeecCCceeEeeeeecCchhhhcchheeeecccccccCCHHHHHHHHHH-HHHHHHhhHHHHHHHHHhcccccccCc
Confidence 344444444333322 345666678899999999999988655432112221 122 22222221 267
Q ss_pred CcEEEEEeCcchHHHHHHHhhCccceeeeeeeeccCCCCCCCchhhhhhcccCCchhhhhhhhhhccccCCCccchhhhh
Q 024134 85 EKVILVGHSFGGLSVALAADKFPHKISVAIFLTAFMPDTKHQPSYVVERFSESIPREERLDTQYSIIDESNPSRMSILFG 164 (272)
Q Consensus 85 ~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (272)
.+..++|-||||.+|......++..|.-+=++++....... .+...... ...+.. ...............
T Consensus 195 g~~~~~g~Smgg~~a~~vgS~~q~Pva~~p~l~~~~asvs~-----teg~l~~~--~s~~~~---~~~~t~~~~~~~r~p 264 (371)
T KOG1551|consen 195 GNLNLVGRSMGGDIANQVGSLHQKPVATAPCLNSSKASVSA-----TEGLLLQD--TSKMKR---FNQTTNKSGYTSRNP 264 (371)
T ss_pred ccceeeeeecccHHHHhhcccCCCCccccccccccccchhh-----hhhhhhhh--hHHHHh---hccCcchhhhhhhCc
Confidence 89999999999999999999888776665555543211110 01111000 000000 000000000000000
Q ss_pred -hhHHHH--hhccCCChhHHHHHHHhccCCccchHHhhhcccccccccCCceeEEEEeCCCCCccHHHHHHHHhcCCCce
Q 024134 165 -HKFLTL--KLYQLSPPEDLELAKMLVKPGLLFTDELSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNNPVNE 241 (272)
Q Consensus 165 -~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~ 241 (272)
..+... ...+....+........+. ++.....+... .-.-=+.++.+++|..+|......+.+..|+++
T Consensus 265 ~Q~~~~~~~~~srn~~~E~~~~Mr~vmd-------~~T~v~~fp~P-vdpsl~ivv~A~~D~Yipr~gv~~lQ~~WPg~e 336 (371)
T KOG1551|consen 265 AQSYHLLSKEQSRNSRKESLIFMRGVMD-------ECTHVANFPVP-VDPSLIIVVQAKEDAYIPRTGVRSLQEIWPGCE 336 (371)
T ss_pred hhhHHHHHHHhhhcchHHHHHHHHHHHH-------hhchhhcCCCC-CCCCeEEEEEecCCccccccCcHHHHHhCCCCE
Confidence 111111 1111112222222222211 11111111000 001236778899999999988899999999999
Q ss_pred EEEecCCCcc-cccCCCchHHHHHHHHHHhh
Q 024134 242 VMAIKGADHM-AMLSKPQPLSDCFSQIAHKY 271 (272)
Q Consensus 242 ~~~~~~~gH~-~~~~~p~~~~~~i~~fl~~~ 271 (272)
+..++ +||. .++-+.+.+...|.+-|++.
T Consensus 337 Vr~~e-gGHVsayl~k~dlfRR~I~d~L~R~ 366 (371)
T KOG1551|consen 337 VRYLE-GGHVSAYLFKQDLFRRAIVDGLDRL 366 (371)
T ss_pred EEEee-cCceeeeehhchHHHHHHHHHHHhh
Confidence 99999 8996 45677789999999888764
No 159
>PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes.
Probab=98.73 E-value=3.1e-06 Score=64.55 Aligned_cols=108 Identities=13% Similarity=0.135 Sum_probs=72.0
Q ss_pred cCCCeEEEEecCCCcch---hHHhhHHHHHhCCCeEEEEcCCC--CCCCCc----------ccc---cc-----------
Q 024134 14 KKQKHFVLVHGSNHGAW---CWYKVKPRLEAAGHRVTAMDLAA--SGINMK----------KIQ---DV----------- 64 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~---~~~~~~~~l~~~g~~v~~~d~~G--~G~s~~----------~~~---~~----------- 64 (272)
.....||++||.+.+.. .-..+-..|.+.||.++++.+|. ...... ... ..
T Consensus 85 ~~~G~vIilp~~g~~~d~p~~i~~LR~~L~~~GW~Tlsit~P~~~~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 164 (310)
T PF12048_consen 85 KPQGAVIILPDWGEHPDWPGLIAPLRRELPDHGWATLSITLPDPAPPASPNRATEAEEVPSAGDQQLSQPSDEPSPASAQ 164 (310)
T ss_pred CCceEEEEecCCCCCCCcHhHHHHHHHHhhhcCceEEEecCCCcccccCCccCCCCCCCCCCCCCCcCCCCCCCcccccc
Confidence 34558999999998874 35677888999999999999887 111100 000 00
Q ss_pred --cch----hhchHHHHHHHHHh--cCCCcEEEEEeCcchHHHHHHHhhCcc-ceeeeeeeeccCC
Q 024134 65 --RSF----YEYNEPLLEILASL--SADEKVILVGHSFGGLSVALAADKFPH-KISVAIFLTAFMP 121 (272)
Q Consensus 65 --~~~----~~~~~~~~~~i~~l--~~~~~~~lvG~S~Gg~~a~~~a~~~p~-~v~~lvl~~~~~~ 121 (272)
... +.+...+.+.+..+ .+..+++||||+.|+..++.+....+. .++++|++++..+
T Consensus 165 ~~~~~~~~~~~~~ari~Aa~~~~~~~~~~~ivlIg~G~gA~~~~~~la~~~~~~~daLV~I~a~~p 230 (310)
T PF12048_consen 165 EAEAREAYEERLFARIEAAIAFAQQQGGKNIVLIGHGTGAGWAARYLAEKPPPMPDALVLINAYWP 230 (310)
T ss_pred HhHHhHHHHHHHHHHHHHHHHHHHhcCCceEEEEEeChhHHHHHHHHhcCCCcccCeEEEEeCCCC
Confidence 011 12222333333333 255669999999999999999988764 5899999998744
No 160
>PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters. In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved [].
Probab=98.72 E-value=2e-06 Score=66.01 Aligned_cols=106 Identities=12% Similarity=0.102 Sum_probs=68.3
Q ss_pred CCCeEEEEecCCCcchhHH-------hhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcCCCcE
Q 024134 15 KQKHFVLVHGSNHGAWCWY-------KVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSADEKV 87 (272)
Q Consensus 15 ~~~~vv~lhG~~~~~~~~~-------~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~ 87 (272)
+.|.||++||.|-.-.... .+...|. ...+++.|+.-...-.....-...+.+.++....+++.. +.+++
T Consensus 121 ~DpVlIYlHGGGY~l~~~p~qi~~L~~i~~~l~--~~SILvLDYsLt~~~~~~~~yPtQL~qlv~~Y~~Lv~~~-G~~nI 197 (374)
T PF10340_consen 121 SDPVLIYLHGGGYFLGTTPSQIEFLLNIYKLLP--EVSILVLDYSLTSSDEHGHKYPTQLRQLVATYDYLVESE-GNKNI 197 (374)
T ss_pred CCcEEEEEcCCeeEecCCHHHHHHHHHHHHHcC--CCeEEEEeccccccccCCCcCchHHHHHHHHHHHHHhcc-CCCeE
Confidence 4689999999875443322 2223332 368888888644311111111245566666666677666 77899
Q ss_pred EEEEeCcchHHHHHHHhhCc-----cceeeeeeeeccCCCC
Q 024134 88 ILVGHSFGGLSVALAADKFP-----HKISVAIFLTAFMPDT 123 (272)
Q Consensus 88 ~lvG~S~Gg~~a~~~a~~~p-----~~v~~lvl~~~~~~~~ 123 (272)
+|+|-|.||.+++.+.+... ..-+++|+++|.....
T Consensus 198 ~LmGDSAGGnL~Ls~LqyL~~~~~~~~Pk~~iLISPWv~l~ 238 (374)
T PF10340_consen 198 ILMGDSAGGNLALSFLQYLKKPNKLPYPKSAILISPWVNLV 238 (374)
T ss_pred EEEecCccHHHHHHHHHHHhhcCCCCCCceeEEECCCcCCc
Confidence 99999999999988875321 1257899999987544
No 161
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=98.72 E-value=1.1e-06 Score=69.62 Aligned_cols=105 Identities=14% Similarity=0.241 Sum_probs=64.8
Q ss_pred CCCeEEEEecCCCcch-hHHhhHHHHHhCCC----eEEEEcCCCCC-CCCcccccccchhhchHHHHHHHHHh----cCC
Q 024134 15 KQKHFVLVHGSNHGAW-CWYKVKPRLEAAGH----RVTAMDLAASG-INMKKIQDVRSFYEYNEPLLEILASL----SAD 84 (272)
Q Consensus 15 ~~~~vv~lhG~~~~~~-~~~~~~~~l~~~g~----~v~~~d~~G~G-~s~~~~~~~~~~~~~~~~~~~~i~~l----~~~ 84 (272)
..|+|+++||..-... .....++.|.+.|. -++.+|-.+.. ++..-.....-...+++++.-.+++. .+.
T Consensus 208 ~~PvlyllDG~~w~~~~~~~~~ld~li~~g~i~P~ivV~id~~~~~~R~~el~~~~~f~~~l~~eLlP~I~~~y~~~~d~ 287 (411)
T PRK10439 208 ERPLAILLDGQFWAESMPVWPALDSLTHRGQLPPAVYLLIDAIDTTHRSQELPCNADFWLAVQQELLPQVRAIAPFSDDA 287 (411)
T ss_pred CCCEEEEEECHHhhhcCCHHHHHHHHHHcCCCCceEEEEECCCCcccccccCCchHHHHHHHHHHHHHHHHHhCCCCCCc
Confidence 4588999999542111 12234455555553 35677753211 11100111112233456666666654 244
Q ss_pred CcEEEEEeCcchHHHHHHHhhCccceeeeeeeecc
Q 024134 85 EKVILVGHSFGGLSVALAADKFPHKISVAIFLTAF 119 (272)
Q Consensus 85 ~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~ 119 (272)
++.+|.|+||||..|+.++.++|+++.+++.+++.
T Consensus 288 ~~~~IaG~S~GGl~AL~~al~~Pd~Fg~v~s~Sgs 322 (411)
T PRK10439 288 DRTVVAGQSFGGLAALYAGLHWPERFGCVLSQSGS 322 (411)
T ss_pred cceEEEEEChHHHHHHHHHHhCcccccEEEEeccc
Confidence 67899999999999999999999999999999975
No 162
>PLN02633 palmitoyl protein thioesterase family protein
Probab=98.70 E-value=7.9e-07 Score=65.99 Aligned_cols=103 Identities=14% Similarity=0.071 Sum_probs=66.7
Q ss_pred cCCCeEEEEecCCCcchh--HHhhHHHHHh-CCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhc-CCCcEEE
Q 024134 14 KKQKHFVLVHGSNHGAWC--WYKVKPRLEA-AGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLS-ADEKVIL 89 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~--~~~~~~~l~~-~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~-~~~~~~l 89 (272)
....|+|+.||+|.+... ...+.+.+.. .|..+.++.. | .+. ...-...+.+.++.+.+.+.... -..-+++
T Consensus 23 ~~~~P~ViwHG~GD~c~~~g~~~~~~l~~~~~g~~~~~i~i-g--~~~-~~s~~~~~~~Qve~vce~l~~~~~l~~G~na 98 (314)
T PLN02633 23 SVSVPFIMLHGIGTQCSDATNANFTQLLTNLSGSPGFCLEI-G--NGV-GDSWLMPLTQQAEIACEKVKQMKELSQGYNI 98 (314)
T ss_pred cCCCCeEEecCCCcccCCchHHHHHHHHHhCCCCceEEEEE-C--CCc-cccceeCHHHHHHHHHHHHhhchhhhCcEEE
Confidence 456799999999977653 3344444432 3666666654 2 221 11111244555555555444431 1245999
Q ss_pred EEeCcchHHHHHHHhhCcc--ceeeeeeeeccC
Q 024134 90 VGHSFGGLSVALAADKFPH--KISVAIFLTAFM 120 (272)
Q Consensus 90 vG~S~Gg~~a~~~a~~~p~--~v~~lvl~~~~~ 120 (272)
||+|.||.++-.++.+.|+ .|+.+|.++++.
T Consensus 99 IGfSQGGlflRa~ierc~~~p~V~nlISlggph 131 (314)
T PLN02633 99 VGRSQGNLVARGLIEFCDGGPPVYNYISLAGPH 131 (314)
T ss_pred EEEccchHHHHHHHHHCCCCCCcceEEEecCCC
Confidence 9999999999999999987 599999998753
No 163
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.67 E-value=1.8e-07 Score=70.25 Aligned_cols=106 Identities=21% Similarity=0.217 Sum_probs=67.9
Q ss_pred cCCCeEEEEecCCCcchh-HHhhHHHHHhCC--CeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHh---cCCCcE
Q 024134 14 KKQKHFVLVHGSNHGAWC-WYKVKPRLEAAG--HRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASL---SADEKV 87 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~-~~~~~~~l~~~g--~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l---~~~~~~ 87 (272)
..+..+||+||+..+-.. -..+++-....| ...+.+.||..|.--.-..+..+.+.-..++..+|+.+ ...+++
T Consensus 114 ~~k~vlvFvHGfNntf~dav~R~aqI~~d~g~~~~pVvFSWPS~g~l~~Yn~DreS~~~Sr~aLe~~lr~La~~~~~~~I 193 (377)
T COG4782 114 SAKTVLVFVHGFNNTFEDAVYRTAQIVHDSGNDGVPVVFSWPSRGSLLGYNYDRESTNYSRPALERLLRYLATDKPVKRI 193 (377)
T ss_pred CCCeEEEEEcccCCchhHHHHHHHHHHhhcCCCcceEEEEcCCCCeeeecccchhhhhhhHHHHHHHHHHHHhCCCCceE
Confidence 456789999999765433 223333333333 46788899987764322211123344455566666665 257889
Q ss_pred EEEEeCcchHHHHHHHhh--------Cccceeeeeeeecc
Q 024134 88 ILVGHSFGGLSVALAADK--------FPHKISVAIFLTAF 119 (272)
Q Consensus 88 ~lvG~S~Gg~~a~~~a~~--------~p~~v~~lvl~~~~ 119 (272)
+|++||||.+++++...+ .+.+++-+|+-+|-
T Consensus 194 ~ilAHSMGtwl~~e~LrQLai~~~~~l~~ki~nViLAaPD 233 (377)
T COG4782 194 YLLAHSMGTWLLMEALRQLAIRADRPLPAKIKNVILAAPD 233 (377)
T ss_pred EEEEecchHHHHHHHHHHHhccCCcchhhhhhheEeeCCC
Confidence 999999999999888754 23457788887764
No 164
>PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins.
Probab=98.65 E-value=2.8e-07 Score=68.85 Aligned_cols=90 Identities=20% Similarity=0.171 Sum_probs=65.0
Q ss_pred cCCCeEEEEecCCCcchhH-------HhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhc----
Q 024134 14 KKQKHFVLVHGSNHGAWCW-------YKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLS---- 82 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~~-------~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~---- 82 (272)
.+...||+.-|.++.-+.. ..+.+.....+-+|+.+++||.|.|.+.. +.++++.+-.+.++.+.
T Consensus 135 ~~~RWiL~s~GNg~~~E~~~~~~~~~~~~~~~ak~~~aNvl~fNYpGVg~S~G~~----s~~dLv~~~~a~v~yL~d~~~ 210 (365)
T PF05677_consen 135 KPQRWILVSNGNGECYENRAMLDYKDDWIQRFAKELGANVLVFNYPGVGSSTGPP----SRKDLVKDYQACVRYLRDEEQ 210 (365)
T ss_pred CCCcEEEEEcCChHHhhhhhhhccccHHHHHHHHHcCCcEEEECCCccccCCCCC----CHHHHHHHHHHHHHHHHhccc
Confidence 4566899998877655441 12223233457899999999999998765 45788887777777762
Q ss_pred --CCCcEEEEEeCcchHHHHHHHhhCc
Q 024134 83 --ADEKVILVGHSFGGLSVALAADKFP 107 (272)
Q Consensus 83 --~~~~~~lvG~S~Gg~~a~~~a~~~p 107 (272)
+.+.+++.|||+||.++..++.++.
T Consensus 211 G~ka~~Ii~yG~SLGG~Vqa~AL~~~~ 237 (365)
T PF05677_consen 211 GPKAKNIILYGHSLGGGVQAEALKKEV 237 (365)
T ss_pred CCChheEEEeeccccHHHHHHHHHhcc
Confidence 3367999999999999888776643
No 165
>COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.65 E-value=4.1e-07 Score=66.50 Aligned_cols=105 Identities=19% Similarity=0.151 Sum_probs=70.9
Q ss_pred CCCeEEEEecCCCcchhHHhhH--HHHHh-CCCeEEEEcC-CC------CCCCCcccccccchhhchHHHHHHHHHh---
Q 024134 15 KQKHFVLVHGSNHGAWCWYKVK--PRLEA-AGHRVTAMDL-AA------SGINMKKIQDVRSFYEYNEPLLEILASL--- 81 (272)
Q Consensus 15 ~~~~vv~lhG~~~~~~~~~~~~--~~l~~-~g~~v~~~d~-~G------~G~s~~~~~~~~~~~~~~~~~~~~i~~l--- 81 (272)
+.|.||++||.+++...+.... +.|++ .||-|+.+|- ++ ++.+..+... ..=.+-+..|.+++..+
T Consensus 60 ~apLvv~LHG~~~sgag~~~~sg~d~lAd~~gFlV~yPdg~~~~wn~~~~~~~~~p~~~-~~g~ddVgflr~lva~l~~~ 138 (312)
T COG3509 60 GAPLVVVLHGSGGSGAGQLHGTGWDALADREGFLVAYPDGYDRAWNANGCGNWFGPADR-RRGVDDVGFLRALVAKLVNE 138 (312)
T ss_pred CCCEEEEEecCCCChHHhhcccchhhhhcccCcEEECcCccccccCCCcccccCCcccc-cCCccHHHHHHHHHHHHHHh
Confidence 4478999999999988776554 55654 5888988852 21 2222112111 11122334444555444
Q ss_pred --cCCCcEEEEEeCcchHHHHHHHhhCccceeeeeeeeccC
Q 024134 82 --SADEKVILVGHSFGGLSVALAADKFPHKISVAIFLTAFM 120 (272)
Q Consensus 82 --~~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~ 120 (272)
-+..+|++.|.|-||.++..++..+|+.+.++..+++..
T Consensus 139 ~gidp~RVyvtGlS~GG~Ma~~lac~~p~~faa~A~VAg~~ 179 (312)
T COG3509 139 YGIDPARVYVTGLSNGGRMANRLACEYPDIFAAIAPVAGLL 179 (312)
T ss_pred cCcCcceEEEEeeCcHHHHHHHHHhcCcccccceeeeeccc
Confidence 134589999999999999999999999999998888765
No 166
>COG2936 Predicted acyl esterases [General function prediction only]
Probab=98.64 E-value=1.2e-06 Score=70.49 Aligned_cols=108 Identities=17% Similarity=0.071 Sum_probs=75.9
Q ss_pred cCCCeEEEEecCCCcch---hH--HhhHH---HHHhCCCeEEEEcCCCCCCCCcccccccc-hhhchHHHHHHHHHh-cC
Q 024134 14 KKQKHFVLVHGSNHGAW---CW--YKVKP---RLEAAGHRVTAMDLAASGINMKKIQDVRS-FYEYNEPLLEILASL-SA 83 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~---~~--~~~~~---~l~~~g~~v~~~d~~G~G~s~~~~~~~~~-~~~~~~~~~~~i~~l-~~ 83 (272)
++.|+++..+-++-... .+ ....+ .++.+||.|+..|.||.|.|++......+ -.+-.-|+.+++... -.
T Consensus 43 g~~Pvll~~~~~Py~k~~~~~~~~~~~~p~~~~~aa~GYavV~qDvRG~~~SeG~~~~~~~~E~~Dg~D~I~Wia~QpWs 122 (563)
T COG2936 43 GPLPVLLSRTRLPYRKRNGTFGPQLSALPQPAWFAAQGYAVVNQDVRGRGGSEGVFDPESSREAEDGYDTIEWLAKQPWS 122 (563)
T ss_pred CCCceeEEeeccccccccccCcchhhcccccceeecCceEEEEecccccccCCcccceeccccccchhHHHHHHHhCCcc
Confidence 56678888882222222 11 12223 57789999999999999999987654344 122233555555555 24
Q ss_pred CCcEEEEEeCcchHHHHHHHhhCccceeeeeeeeccCC
Q 024134 84 DEKVILVGHSFGGLSVALAADKFPHKISVAIFLTAFMP 121 (272)
Q Consensus 84 ~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~ 121 (272)
..+|..+|.|++|...+.+|+..|..++.++...+...
T Consensus 123 NG~Vgm~G~SY~g~tq~~~Aa~~pPaLkai~p~~~~~D 160 (563)
T COG2936 123 NGNVGMLGLSYLGFTQLAAAALQPPALKAIAPTEGLVD 160 (563)
T ss_pred CCeeeeecccHHHHHHHHHHhcCCchheeecccccccc
Confidence 68899999999999999999999988999887776543
No 167
>PF08386 Abhydrolase_4: TAP-like protein; InterPro: IPR013595 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a C-terminal domain associated with putative hydrolases and bacterial peptidases that belong to MEROPS peptidase family S33 (clan SC). They are related to a tripeptidyl aminopeptidase from Streptomyces lividans (Q54410 from SWISSPROT). A member of this family (Q6E3K7 from SWISSPROT) is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterised from Propionibacterium freudenreichii []. ; GO: 0008233 peptidase activity
Probab=98.59 E-value=2.9e-07 Score=58.01 Aligned_cols=60 Identities=15% Similarity=0.161 Sum_probs=54.2
Q ss_pred CceeEEEEeCCCCCccHHHHHHHHhcCCCceEEEecCCCcccccCCCchHHHHHHHHHHh
Q 024134 211 SVKRDFVGSDKDNCIPKEFQQWMIQNNPVNEVMAIKGADHMAMLSKPQPLSDCFSQIAHK 270 (272)
Q Consensus 211 ~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~p~~~~~~i~~fl~~ 270 (272)
..|+|++.++.|+.+|.+.++.+++.+++++++.+++.||..+.....-+.+.+.+||..
T Consensus 34 ~~piL~l~~~~Dp~TP~~~a~~~~~~l~~s~lvt~~g~gHg~~~~~s~C~~~~v~~yl~~ 93 (103)
T PF08386_consen 34 APPILVLGGTHDPVTPYEGARAMAARLPGSRLVTVDGAGHGVYAGGSPCVDKAVDDYLLD 93 (103)
T ss_pred CCCEEEEecCcCCCCcHHHHHHHHHHCCCceEEEEeccCcceecCCChHHHHHHHHHHHc
Confidence 589999999999999999999999999999999999999999875556778888899864
No 168
>COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only]
Probab=98.59 E-value=7.9e-07 Score=67.94 Aligned_cols=60 Identities=12% Similarity=0.255 Sum_probs=49.1
Q ss_pred ceeEEEEeCCCCCccHHHHHHHHhcCCC--ceEEEecCCCcccccCCCc---hHHHHHHHHHHhh
Q 024134 212 VKRDFVGSDKDNCIPKEFQQWMIQNNPV--NEVMAIKGADHMAMLSKPQ---PLSDCFSQIAHKY 271 (272)
Q Consensus 212 ~P~l~i~g~~D~~~~~~~~~~~~~~~~~--~~~~~~~~~gH~~~~~~p~---~~~~~i~~fl~~~ 271 (272)
+|+++++|.+|..+|......+.+.... .+...+++++|......+. +..+.+.+|+.+.
T Consensus 233 ~P~l~~~G~~D~~vp~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~f~~~~ 297 (299)
T COG1073 233 RPVLLVHGERDEVVPLRDAEDLYEAARERPKKLLFVPGGGHIDLYDNPPAVEQALDKLAEFLERH 297 (299)
T ss_pred cceEEEecCCCcccchhhhHHHHhhhccCCceEEEecCCccccccCccHHHHHHHHHHHHHHHHh
Confidence 7999999999999999988888877655 5778888999998865444 6778888888764
No 169
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=98.58 E-value=6.2e-07 Score=72.31 Aligned_cols=107 Identities=19% Similarity=0.138 Sum_probs=68.9
Q ss_pred CCCeEEEEecCCCcchhH--HhhHHHHHh-CCCeEEEEcCCCCCCCCcccc------cccchhhchHHHHHHHHHhc---
Q 024134 15 KQKHFVLVHGSNHGAWCW--YKVKPRLEA-AGHRVTAMDLAASGINMKKIQ------DVRSFYEYNEPLLEILASLS--- 82 (272)
Q Consensus 15 ~~~~vv~lhG~~~~~~~~--~~~~~~l~~-~g~~v~~~d~~G~G~s~~~~~------~~~~~~~~~~~~~~~i~~l~--- 82 (272)
++|.+|++-|=+.-...+ ..++..|++ .|--++++++|-+|.|.+... ...+.++..+|+..+++++.
T Consensus 28 ~gpifl~~ggE~~~~~~~~~~~~~~~lA~~~~a~~v~lEHRyYG~S~P~~~~s~~nL~yLt~~QALaD~a~F~~~~~~~~ 107 (434)
T PF05577_consen 28 GGPIFLYIGGEGPIEPFWINNGFMWELAKEFGALVVALEHRYYGKSQPFGDLSTENLRYLTSEQALADLAYFIRYVKKKY 107 (434)
T ss_dssp TSEEEEEE--SS-HHHHHHH-HHHHHHHHHHTEEEEEE--TTSTTB-TTGGGGGSTTTC-SHHHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCccchhhhcCChHHHHHHHcCCcEEEeehhhhcCCCCccccchhhHHhcCHHHHHHHHHHHHHHHHHhh
Confidence 356666665443222222 234555654 367899999999999975432 23477888899998888772
Q ss_pred ---CCCcEEEEEeCcchHHHHHHHhhCccceeeeeeeeccCC
Q 024134 83 ---ADEKVILVGHSFGGLSVALAADKFPHKISVAIFLTAFMP 121 (272)
Q Consensus 83 ---~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~ 121 (272)
...|++++|-|.||++|..+-.+||+.|.+.+..++++.
T Consensus 108 ~~~~~~pwI~~GgSY~G~Laaw~r~kyP~~~~ga~ASSapv~ 149 (434)
T PF05577_consen 108 NTAPNSPWIVFGGSYGGALAAWFRLKYPHLFDGAWASSAPVQ 149 (434)
T ss_dssp TTGCC--EEEEEETHHHHHHHHHHHH-TTT-SEEEEET--CC
T ss_pred cCCCCCCEEEECCcchhHHHHHHHhhCCCeeEEEEeccceee
Confidence 345899999999999999999999999999988877653
No 170
>PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae.; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D ....
Probab=98.58 E-value=2e-07 Score=69.55 Aligned_cols=107 Identities=16% Similarity=0.145 Sum_probs=64.5
Q ss_pred cCCCeEEEEecCCCcchhH--HhhHHHHHhCC----CeEEEEcCCCCCCC--Ccc-----------cccccch-hhchHH
Q 024134 14 KKQKHFVLVHGSNHGAWCW--YKVKPRLEAAG----HRVTAMDLAASGIN--MKK-----------IQDVRSF-YEYNEP 73 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~~--~~~~~~l~~~g----~~v~~~d~~G~G~s--~~~-----------~~~~~~~-~~~~~~ 73 (272)
..-|+|+++||.......+ ...+..+...+ .-+++++..+.+.. ... ......+ .-+.++
T Consensus 22 ~~~PvlylldG~~~~~~~~~~~~~~~~~~~~~~~~~~iiV~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e 101 (251)
T PF00756_consen 22 KPYPVLYLLDGQSGWFRNGNAQEALDRLIAEGKIPPMIIVVIPNGDNSRFYTSWYLPAGSSRRADDSGGGDAYETFLTEE 101 (251)
T ss_dssp TTEEEEEEESHTTHHHHHHHHHHHHHHHHHHHTSEEEEEEEEESSSTSSTTSBTTSSBCTTCBCTSTTTHHHHHHHHHTH
T ss_pred CCCEEEEEccCCccccccchHHHHHHHHHHhCCCCceEEEEEecccccccccccccccccccccccCCCCcccceehhcc
Confidence 4457899999972222222 23334344332 34566665544411 000 0011122 234456
Q ss_pred HHHHHHHhcC--CCcEEEEEeCcchHHHHHHHhhCccceeeeeeeeccC
Q 024134 74 LLEILASLSA--DEKVILVGHSFGGLSVALAADKFPHKISVAIFLTAFM 120 (272)
Q Consensus 74 ~~~~i~~l~~--~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~ 120 (272)
|...|+.... ..+..++|+||||..|+.++.++|+.+.+++.++|..
T Consensus 102 l~p~i~~~~~~~~~~~~i~G~S~GG~~Al~~~l~~Pd~F~~~~~~S~~~ 150 (251)
T PF00756_consen 102 LIPYIEANYRTDPDRRAIAGHSMGGYGALYLALRHPDLFGAVIAFSGAL 150 (251)
T ss_dssp HHHHHHHHSSEEECCEEEEEETHHHHHHHHHHHHSTTTESEEEEESEES
T ss_pred chhHHHHhcccccceeEEeccCCCcHHHHHHHHhCccccccccccCccc
Confidence 6777766511 1227999999999999999999999999999999864
No 171
>PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2.3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process
Probab=98.55 E-value=4.6e-07 Score=71.51 Aligned_cols=84 Identities=25% Similarity=0.291 Sum_probs=60.9
Q ss_pred hHHhhHHHHHhCCCeE-----EE-EcCCCCCCCCcccccccchhhchHHHHHHHHHh--cCCCcEEEEEeCcchHHHHHH
Q 024134 31 CWYKVKPRLEAAGHRV-----TA-MDLAASGINMKKIQDVRSFYEYNEPLLEILASL--SADEKVILVGHSFGGLSVALA 102 (272)
Q Consensus 31 ~~~~~~~~l~~~g~~v-----~~-~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l--~~~~~~~lvG~S~Gg~~a~~~ 102 (272)
.|..+++.|.+.||.. .+ +|+|-- . ...+++...+.+.|+.. ...+|++||||||||.++..+
T Consensus 66 ~~~~li~~L~~~GY~~~~~l~~~pYDWR~~------~---~~~~~~~~~lk~~ie~~~~~~~~kv~li~HSmGgl~~~~f 136 (389)
T PF02450_consen 66 YFAKLIENLEKLGYDRGKDLFAAPYDWRLS------P---AERDEYFTKLKQLIEEAYKKNGKKVVLIAHSMGGLVARYF 136 (389)
T ss_pred hHHHHHHHHHhcCcccCCEEEEEeechhhc------h---hhHHHHHHHHHHHHHHHHHhcCCcEEEEEeCCCchHHHHH
Confidence 5889999999877752 22 687711 0 12345666666666665 246899999999999999999
Q ss_pred HhhCcc------ceeeeeeeeccCCCC
Q 024134 103 ADKFPH------KISVAIFLTAFMPDT 123 (272)
Q Consensus 103 a~~~p~------~v~~lvl~~~~~~~~ 123 (272)
....+. .|+++|.++++....
T Consensus 137 l~~~~~~~W~~~~i~~~i~i~~p~~Gs 163 (389)
T PF02450_consen 137 LQWMPQEEWKDKYIKRFISIGTPFGGS 163 (389)
T ss_pred HHhccchhhHHhhhhEEEEeCCCCCCC
Confidence 887753 599999999875433
No 172
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=98.53 E-value=3e-06 Score=68.66 Aligned_cols=109 Identities=13% Similarity=0.171 Sum_probs=78.8
Q ss_pred ccCCCeEEEEecCCCcchh--HHhhHHHHHhCCCeEEEEcCCCCCCCC-------cccccccchhhchHHHHHHHHHh-c
Q 024134 13 AKKQKHFVLVHGSNHGAWC--WYKVKPRLEAAGHRVTAMDLAASGINM-------KKIQDVRSFYEYNEPLLEILASL-S 82 (272)
Q Consensus 13 ~~~~~~vv~lhG~~~~~~~--~~~~~~~l~~~g~~v~~~d~~G~G~s~-------~~~~~~~~~~~~~~~~~~~i~~l-~ 82 (272)
.++.|.+|.--|.-+.+.. |....-.|.++|+-.....-||=|.=. +......++.|+++....+++.- .
T Consensus 445 ~g~~p~lLygYGaYG~s~~p~Fs~~~lSLlDRGfiyAIAHVRGGgelG~~WYe~GK~l~K~NTf~DFIa~a~~Lv~~g~~ 524 (682)
T COG1770 445 DGSAPLLLYGYGAYGISMDPSFSIARLSLLDRGFVYAIAHVRGGGELGRAWYEDGKLLNKKNTFTDFIAAARHLVKEGYT 524 (682)
T ss_pred CCCCcEEEEEeccccccCCcCcccceeeeecCceEEEEEEeecccccChHHHHhhhhhhccccHHHHHHHHHHHHHcCcC
Confidence 3667777777776544432 444444566789877777788866532 12223458888887777777654 3
Q ss_pred CCCcEEEEEeCcchHHHHHHHhhCccceeeeeeeeccCC
Q 024134 83 ADEKVILVGHSFGGLSVALAADKFPHKISVAIFLTAFMP 121 (272)
Q Consensus 83 ~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~ 121 (272)
..+.++++|-|.||+++-..+...|+.++++|+-.|++.
T Consensus 525 ~~~~i~a~GGSAGGmLmGav~N~~P~lf~~iiA~VPFVD 563 (682)
T COG1770 525 SPDRIVAIGGSAGGMLMGAVANMAPDLFAGIIAQVPFVD 563 (682)
T ss_pred CccceEEeccCchhHHHHHHHhhChhhhhheeecCCccc
Confidence 456899999999999999999999999999999888764
No 173
>KOG3724 consensus Negative regulator of COPII vesicle formation [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=5.1e-07 Score=74.19 Aligned_cols=101 Identities=15% Similarity=0.173 Sum_probs=64.8
Q ss_pred cCCCeEEEEecCCCcchhHHhhHHHHHh----------------CCCeEEEEcCCCCCCCCcccccccchhhchHHHHHH
Q 024134 14 KKQKHFVLVHGSNHGAWCWYKVKPRLEA----------------AGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEI 77 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~~~~~~~~l~~----------------~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~ 77 (272)
-++-||+||+|..|+-..-+.++..... ..++..+.|+-+- -..-...++.+.++-+.+.
T Consensus 87 lsGIPVLFIPGNAGSyKQvRSiAS~a~n~y~~~~~e~t~~~d~~~~~DFFaVDFnEe----~tAm~G~~l~dQtEYV~dA 162 (973)
T KOG3724|consen 87 LSGIPVLFIPGNAGSYKQVRSIASVAQNAYQGGPFEKTEDRDNPFSFDFFAVDFNEE----FTAMHGHILLDQTEYVNDA 162 (973)
T ss_pred CCCceEEEecCCCCchHHHHHHHHHHhhhhcCCchhhhhcccCccccceEEEcccch----hhhhccHhHHHHHHHHHHH
Confidence 3567999999999998887776655441 1345555555320 0011224666777766666
Q ss_pred HHHh----cC--------CCcEEEEEeCcchHHHHHHHhhCc----cceeeeeeeecc
Q 024134 78 LASL----SA--------DEKVILVGHSFGGLSVALAADKFP----HKISVAIFLTAF 119 (272)
Q Consensus 78 i~~l----~~--------~~~~~lvG~S~Gg~~a~~~a~~~p----~~v~~lvl~~~~ 119 (272)
|+.+ .+ ...+++|||||||.+|..++ .+| +.|..++..+++
T Consensus 163 Ik~ILslYr~~~e~~~p~P~sVILVGHSMGGiVAra~~-tlkn~~~~sVntIITlssP 219 (973)
T KOG3724|consen 163 IKYILSLYRGEREYASPLPHSVILVGHSMGGIVARATL-TLKNEVQGSVNTIITLSSP 219 (973)
T ss_pred HHHHHHHhhcccccCCCCCceEEEEeccchhHHHHHHH-hhhhhccchhhhhhhhcCc
Confidence 6554 11 34499999999999998887 344 456666666654
No 174
>PLN02209 serine carboxypeptidase
Probab=98.50 E-value=1.9e-05 Score=63.06 Aligned_cols=59 Identities=20% Similarity=0.196 Sum_probs=47.4
Q ss_pred CceeEEEEeCCCCCccHHHHHHHHhcC------------------------CC-ceEEEecCCCcccccCCCchHHHHHH
Q 024134 211 SVKRDFVGSDKDNCIPKEFQQWMIQNN------------------------PV-NEVMAIKGADHMAMLSKPQPLSDCFS 265 (272)
Q Consensus 211 ~~P~l~i~g~~D~~~~~~~~~~~~~~~------------------------~~-~~~~~~~~~gH~~~~~~p~~~~~~i~ 265 (272)
.++||+..|+.|.+++.-..+.+.+.+ .+ .+++.+-+|||+.+ .+|++..+.+.
T Consensus 351 girVLiY~GD~D~icn~~Gte~wi~~L~w~~~~~~~~w~~~~q~aG~vk~y~n~Ltfv~V~~AGHmVp-~qP~~al~m~~ 429 (437)
T PLN02209 351 GYRSLIFSGDHDITMPFQATQAWIKSLNYSIIDDWRPWMIKGQIAGYTRTYSNKMTFATVKGGGHTAE-YLPEESSIMFQ 429 (437)
T ss_pred CceEEEEECCccccCCcHhHHHHHHhcCCccCCCeeeeEECCEeeeEEEEeCCceEEEEEcCCCCCcC-cCHHHHHHHHH
Confidence 579999999999999977666555433 22 56777889999996 69999999999
Q ss_pred HHHHh
Q 024134 266 QIAHK 270 (272)
Q Consensus 266 ~fl~~ 270 (272)
+|+..
T Consensus 430 ~fi~~ 434 (437)
T PLN02209 430 RWISG 434 (437)
T ss_pred HHHcC
Confidence 99864
No 175
>KOG3101 consensus Esterase D [General function prediction only]
Probab=98.49 E-value=1.3e-06 Score=60.46 Aligned_cols=108 Identities=19% Similarity=0.188 Sum_probs=69.4
Q ss_pred CCeEEEEecCCCcchhHH---hhHHHHHhCCCeEEEEcCCCCCC-----CCccc-c---------------cccchhhc-
Q 024134 16 QKHFVLVHGSNHGAWCWY---KVKPRLEAAGHRVTAMDLAASGI-----NMKKI-Q---------------DVRSFYEY- 70 (272)
Q Consensus 16 ~~~vv~lhG~~~~~~~~~---~~~~~l~~~g~~v~~~d~~G~G~-----s~~~~-~---------------~~~~~~~~- 70 (272)
-|++.++.|+.++.+.|. .+...-++.|+.|+.+|-.-.|. ++... + ..+.+.++
T Consensus 44 ~P~lf~LSGLTCT~~Nfi~Ksg~qq~As~hgl~vV~PDTSPRG~~v~g~~eswDFG~GAGFYvnAt~epw~~~yrMYdYv 123 (283)
T KOG3101|consen 44 CPVLFYLSGLTCTHENFIEKSGFQQQASKHGLAVVAPDTSPRGVEVAGDDESWDFGQGAGFYVNATQEPWAKHYRMYDYV 123 (283)
T ss_pred CceEEEecCCcccchhhHhhhhHHHhHhhcCeEEECCCCCCCccccCCCcccccccCCceeEEecccchHhhhhhHHHHH
Confidence 588999999999888763 23344456789999999543332 21100 0 01222222
Q ss_pred hHHHHHHHHHh---cCCCcEEEEEeCcchHHHHHHHhhCccceeeeeeeeccCCCC
Q 024134 71 NEPLLEILASL---SADEKVILVGHSFGGLSVALAADKFPHKISVAIFLTAFMPDT 123 (272)
Q Consensus 71 ~~~~~~~i~~l---~~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~ 123 (272)
++.+.+++..- -...++.+.||||||.=|+..+.+.|.+.+++-..+|...+.
T Consensus 124 ~kELp~~l~~~~~pld~~k~~IfGHSMGGhGAl~~~Lkn~~kykSvSAFAPI~NP~ 179 (283)
T KOG3101|consen 124 VKELPQLLNSANVPLDPLKVGIFGHSMGGHGALTIYLKNPSKYKSVSAFAPICNPI 179 (283)
T ss_pred HHHHHHHhccccccccchhcceeccccCCCceEEEEEcCcccccceeccccccCcc
Confidence 23344444421 144578999999999999999999999999887777754433
No 176
>PLN03016 sinapoylglucose-malate O-sinapoyltransferase
Probab=98.45 E-value=2e-05 Score=62.94 Aligned_cols=59 Identities=19% Similarity=0.141 Sum_probs=47.2
Q ss_pred CceeEEEEeCCCCCccHHHHHHHHhcC------------------------CC-ceEEEecCCCcccccCCCchHHHHHH
Q 024134 211 SVKRDFVGSDKDNCIPKEFQQWMIQNN------------------------PV-NEVMAIKGADHMAMLSKPQPLSDCFS 265 (272)
Q Consensus 211 ~~P~l~i~g~~D~~~~~~~~~~~~~~~------------------------~~-~~~~~~~~~gH~~~~~~p~~~~~~i~ 265 (272)
..+||+..|+.|.++|.-..+.+.+.+ .+ .+++.+-+|||+.+ .+|++..+.+.
T Consensus 347 ~irVLiY~Gd~D~icn~~Gt~~wi~~L~w~~~~~~~~w~~~~~~~G~vk~y~n~ltfv~V~~AGHmVp-~qP~~al~m~~ 425 (433)
T PLN03016 347 GYRSLIYSGDHDIAVPFLATQAWIRSLNYSPIHNWRPWMINNQIAGYTRAYSNKMTFATIKAGGHTAE-YRPNETFIMFQ 425 (433)
T ss_pred CceEEEEECCccccCCcHhHHHHHHhCCCCCCCCcccccCCCEeeeEEEEeCCceEEEEEcCCCCCCC-CCHHHHHHHHH
Confidence 589999999999999977666555433 12 45677889999996 58999999999
Q ss_pred HHHHh
Q 024134 266 QIAHK 270 (272)
Q Consensus 266 ~fl~~ 270 (272)
.|+..
T Consensus 426 ~Fi~~ 430 (433)
T PLN03016 426 RWISG 430 (433)
T ss_pred HHHcC
Confidence 99864
No 177
>COG3946 VirJ Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion]
Probab=98.44 E-value=3.4e-06 Score=64.34 Aligned_cols=86 Identities=20% Similarity=0.202 Sum_probs=65.0
Q ss_pred CeEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhc---CCCcEEEEEeC
Q 024134 17 KHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLS---ADEKVILVGHS 93 (272)
Q Consensus 17 ~~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~---~~~~~~lvG~S 93 (272)
..-||+.|=|+-...=+.+.+.|+++|+.|+-+|-.-|-.|. .+.++.++|+..+++... +.+++.|+|+|
T Consensus 261 ~~av~~SGDGGWr~lDk~v~~~l~~~gvpVvGvdsLRYfW~~------rtPe~~a~Dl~r~i~~y~~~w~~~~~~liGyS 334 (456)
T COG3946 261 TVAVFYSGDGGWRDLDKEVAEALQKQGVPVVGVDSLRYFWSE------RTPEQIAADLSRLIRFYARRWGAKRVLLIGYS 334 (456)
T ss_pred eEEEEEecCCchhhhhHHHHHHHHHCCCceeeeehhhhhhcc------CCHHHHHHHHHHHHHHHHHhhCcceEEEEeec
Confidence 345666665555554567889999999999999966555554 377888999998888762 56889999999
Q ss_pred cchHHHHHHHhhCcc
Q 024134 94 FGGLSVALAADKFPH 108 (272)
Q Consensus 94 ~Gg~~a~~~a~~~p~ 108 (272)
+|+=+.-....+.|.
T Consensus 335 fGADvlP~~~n~L~~ 349 (456)
T COG3946 335 FGADVLPFAYNRLPP 349 (456)
T ss_pred ccchhhHHHHHhCCH
Confidence 999877776666664
No 178
>PF02089 Palm_thioest: Palmitoyl protein thioesterase; InterPro: IPR002472 Neuronal ceroid lipofuscinoses (NCL) represent a group of encephalopathies that occur in 1 in 12,500 children. Mutations in the palmitoyl protein thioesterase gene causing infantile neuronal ceroid lipofuscinosis []. The most common mutation results in intracellular accumulation of the polypeptide and undetectable enzyme activity in the brain. Direct sequencing of cDNAs derived from brain RNA of INCL patients has shown a mis-sense transversion of A to T at nucleotide position 364, which results in substitution of Trp for Arg at position 122 in the protein - Arg 122 is immediately adjacent to a lipase consensus sequence that contains the putative active site Ser of PPT. The occurrence of this and two other independent mutations in the PPT gene strongly suggests that defects in this gene cause INCL.; GO: 0008474 palmitoyl-(protein) hydrolase activity, 0006464 protein modification process; PDB: 3GRO_B 1PJA_A 1EXW_A 1EH5_A 1EI9_A.
Probab=98.39 E-value=1.2e-06 Score=64.43 Aligned_cols=105 Identities=17% Similarity=0.144 Sum_probs=56.7
Q ss_pred CCCeEEEEecCCCcc---hhHHhhHHHHHh--CCCeEEEEcCCCCCCC-CcccccccchhhchHHHHHHHHHhc-CCCcE
Q 024134 15 KQKHFVLVHGSNHGA---WCWYKVKPRLEA--AGHRVTAMDLAASGIN-MKKIQDVRSFYEYNEPLLEILASLS-ADEKV 87 (272)
Q Consensus 15 ~~~~vv~lhG~~~~~---~~~~~~~~~l~~--~g~~v~~~d~~G~G~s-~~~~~~~~~~~~~~~~~~~~i~~l~-~~~~~ 87 (272)
+..|||+.||+|.+. ..+..+...+.+ .|..|.+++. |-+.+ +....-.-++.+.++.+.+.+.... -..-+
T Consensus 4 ~~~PvViwHGmGD~~~~~~~m~~i~~~i~~~~PG~yV~si~i-g~~~~~D~~~s~f~~v~~Qv~~vc~~l~~~p~L~~G~ 82 (279)
T PF02089_consen 4 SPLPVVIWHGMGDSCCNPSSMGSIKELIEEQHPGTYVHSIEI-GNDPSEDVENSFFGNVNDQVEQVCEQLANDPELANGF 82 (279)
T ss_dssp SS--EEEE--TT--S--TTTHHHHHHHHHHHSTT--EEE--S-SSSHHHHHHHHHHSHHHHHHHHHHHHHHH-GGGTT-E
T ss_pred CCCcEEEEEcCccccCChhHHHHHHHHHHHhCCCceEEEEEE-CCCcchhhhhhHHHHHHHHHHHHHHHHhhChhhhcce
Confidence 446899999999764 244444444432 3667777776 22221 1111111245666666666666531 12569
Q ss_pred EEEEeCcchHHHHHHHhhCcc-ceeeeeeeeccC
Q 024134 88 ILVGHSFGGLSVALAADKFPH-KISVAIFLTAFM 120 (272)
Q Consensus 88 ~lvG~S~Gg~~a~~~a~~~p~-~v~~lvl~~~~~ 120 (272)
+++|+|.||.+.-.++.++|+ .|+.+|.++++.
T Consensus 83 ~~IGfSQGgl~lRa~vq~c~~~~V~nlISlggph 116 (279)
T PF02089_consen 83 NAIGFSQGGLFLRAYVQRCNDPPVHNLISLGGPH 116 (279)
T ss_dssp EEEEETCHHHHHHHHHHH-TSS-EEEEEEES--T
T ss_pred eeeeeccccHHHHHHHHHCCCCCceeEEEecCcc
Confidence 999999999999999999875 699999998753
No 179
>KOG2541 consensus Palmitoyl protein thioesterase [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=3e-05 Score=56.08 Aligned_cols=99 Identities=17% Similarity=0.199 Sum_probs=69.2
Q ss_pred CCCeEEEEecCCCcchh--HHhhHHHHHh-CCCeEEEEcCCCCC--CCCcccccccchhhchHHHHHHHHHhc-CCCcEE
Q 024134 15 KQKHFVLVHGSNHGAWC--WYKVKPRLEA-AGHRVTAMDLAASG--INMKKIQDVRSFYEYNEPLLEILASLS-ADEKVI 88 (272)
Q Consensus 15 ~~~~vv~lhG~~~~~~~--~~~~~~~l~~-~g~~v~~~d~~G~G--~s~~~~~~~~~~~~~~~~~~~~i~~l~-~~~~~~ 88 (272)
+..|+|++||+++++.. ...+.+.+.+ .|..|+++|. |-| .|. .....+.++.+.+.+.... -.+-+.
T Consensus 22 s~~P~ii~HGigd~c~~~~~~~~~q~l~~~~g~~v~~lei-g~g~~~s~-----l~pl~~Qv~~~ce~v~~m~~lsqGyn 95 (296)
T KOG2541|consen 22 SPVPVIVWHGIGDSCSSLSMANLTQLLEELPGSPVYCLEI-GDGIKDSS-----LMPLWEQVDVACEKVKQMPELSQGYN 95 (296)
T ss_pred ccCCEEEEeccCcccccchHHHHHHHHHhCCCCeeEEEEe-cCCcchhh-----hccHHHHHHHHHHHHhcchhccCceE
Confidence 33689999999988876 6666666654 3778888886 444 221 1244555555555555331 235699
Q ss_pred EEEeCcchHHHHHHHhhCcc-ceeeeeeeecc
Q 024134 89 LVGHSFGGLSVALAADKFPH-KISVAIFLTAF 119 (272)
Q Consensus 89 lvG~S~Gg~~a~~~a~~~p~-~v~~lvl~~~~ 119 (272)
++|.|.||.++-.++...++ .|+..|.++++
T Consensus 96 ivg~SQGglv~Raliq~cd~ppV~n~ISL~gP 127 (296)
T KOG2541|consen 96 IVGYSQGGLVARALIQFCDNPPVKNFISLGGP 127 (296)
T ss_pred EEEEccccHHHHHHHHhCCCCCcceeEeccCC
Confidence 99999999999999987765 48888888764
No 180
>cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate.
Probab=98.31 E-value=2.5e-06 Score=70.18 Aligned_cols=106 Identities=15% Similarity=0.066 Sum_probs=64.3
Q ss_pred cCCCeEEEEecCCCc---chhHHhhHHHHHhC-C-CeEEEEcCC----CCCCCCccc-ccccchhhchH---HHHHHHHH
Q 024134 14 KKQKHFVLVHGSNHG---AWCWYKVKPRLEAA-G-HRVTAMDLA----ASGINMKKI-QDVRSFYEYNE---PLLEILAS 80 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~---~~~~~~~~~~l~~~-g-~~v~~~d~~----G~G~s~~~~-~~~~~~~~~~~---~~~~~i~~ 80 (272)
...|+||++||.+.. ...+ ....|+.. + +.|+++++| |+..+.... .....+.|... .+.+-++.
T Consensus 93 ~~~pv~v~ihGG~~~~g~~~~~--~~~~~~~~~~~~~vv~~~yRlg~~g~~~~~~~~~~~n~g~~D~~~al~wv~~~i~~ 170 (493)
T cd00312 93 NSLPVMVWIHGGGFMFGSGSLY--PGDGLAREGDNVIVVSINYRLGVLGFLSTGDIELPGNYGLKDQRLALKWVQDNIAA 170 (493)
T ss_pred CCCCEEEEEcCCccccCCCCCC--ChHHHHhcCCCEEEEEecccccccccccCCCCCCCcchhHHHHHHHHHHHHHHHHH
Confidence 346899999997532 2222 23445443 3 899999998 333322111 11123334333 33344444
Q ss_pred h-cCCCcEEEEEeCcchHHHHHHHhh--CccceeeeeeeeccCC
Q 024134 81 L-SADEKVILVGHSFGGLSVALAADK--FPHKISVAIFLTAFMP 121 (272)
Q Consensus 81 l-~~~~~~~lvG~S~Gg~~a~~~a~~--~p~~v~~lvl~~~~~~ 121 (272)
. .+.++|.|+|+|.||..+..++.. .+..++++|+.++...
T Consensus 171 fggd~~~v~~~G~SaG~~~~~~~~~~~~~~~lf~~~i~~sg~~~ 214 (493)
T cd00312 171 FGGDPDSVTIFGESAGGASVSLLLLSPDSKGLFHRAISQSGSAL 214 (493)
T ss_pred hCCCcceEEEEeecHHHHHhhhHhhCcchhHHHHHHhhhcCCcc
Confidence 3 356789999999999988888765 2456889998887543
No 181
>KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=6e-06 Score=66.65 Aligned_cols=109 Identities=17% Similarity=0.162 Sum_probs=74.6
Q ss_pred ccCCCeEEEEecCCCcch--hHHhhHHHHHhCCCeEEEEcCCCCCCCC---cccc----cccchhhchHHHHHHHHHh-c
Q 024134 13 AKKQKHFVLVHGSNHGAW--CWYKVKPRLEAAGHRVTAMDLAASGINM---KKIQ----DVRSFYEYNEPLLEILASL-S 82 (272)
Q Consensus 13 ~~~~~~vv~lhG~~~~~~--~~~~~~~~l~~~g~~v~~~d~~G~G~s~---~~~~----~~~~~~~~~~~~~~~i~~l-~ 82 (272)
.+++|.+|..+|.-+-+- .|..-...|.++|+-....|.||=|.-. ...+ ...++.|+..-...+++.- .
T Consensus 467 dg~~P~LLygYGay~isl~p~f~~srl~lld~G~Vla~a~VRGGGe~G~~WHk~G~lakKqN~f~Dfia~AeyLve~gyt 546 (712)
T KOG2237|consen 467 DGSKPLLLYGYGAYGISLDPSFRASRLSLLDRGWVLAYANVRGGGEYGEQWHKDGRLAKKQNSFDDFIACAEYLVENGYT 546 (712)
T ss_pred cCCCceEEEEecccceeeccccccceeEEEecceEEEEEeeccCcccccchhhccchhhhcccHHHHHHHHHHHHHcCCC
Confidence 357788777777643332 2443333344688888888999976532 2222 2345666655555555542 3
Q ss_pred CCCcEEEEEeCcchHHHHHHHhhCccceeeeeeeeccCC
Q 024134 83 ADEKVILVGHSFGGLSVALAADKFPHKISVAIFLTAFMP 121 (272)
Q Consensus 83 ~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~ 121 (272)
...+..+.|.|.||.++-.++.++|+.+.++|+-.|+..
T Consensus 547 ~~~kL~i~G~SaGGlLvga~iN~rPdLF~avia~VpfmD 585 (712)
T KOG2237|consen 547 QPSKLAIEGGSAGGLLVGACINQRPDLFGAVIAKVPFMD 585 (712)
T ss_pred CccceeEecccCccchhHHHhccCchHhhhhhhcCccee
Confidence 567899999999999999999999999999998777643
No 182
>PF10142 PhoPQ_related: PhoPQ-activated pathogenicity-related protein; InterPro: IPR009199 Proteins in this entry are believed to play a role in virulence/pathogenicity in Salmonella. Salmonella typhi PqaA has been shown to be activated by PhoP/Q two-component regulatory system, which regulates many virulence genes []. It has been also shown to confer resistance to antimicrobial peptides (melittin) []. Members of this family are predicted to belong to the alpha/beta hydrolase domain superfamily.
Probab=98.28 E-value=1.8e-05 Score=61.15 Aligned_cols=149 Identities=12% Similarity=0.174 Sum_probs=89.8
Q ss_pred CCCcEEEEEeCcchHHHHHHHhhCccceeeeeeeeccCCCCCCCchhhhhhcccCCchhhhhhhhhhccc-cCCCccchh
Q 024134 83 ADEKVILVGHSFGGLSVALAADKFPHKISVAIFLTAFMPDTKHQPSYVVERFSESIPREERLDTQYSIID-ESNPSRMSI 161 (272)
Q Consensus 83 ~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 161 (272)
..+++++.|.|==|..++..|+ ...||++++-+.-...... ..+...+..++ .....
T Consensus 170 ~i~~FvV~GaSKRGWTtWltaa-~D~RV~aivP~Vid~LN~~-----------------~~l~h~y~~yG~~ws~a---- 227 (367)
T PF10142_consen 170 NIEKFVVTGASKRGWTTWLTAA-VDPRVKAIVPIVIDVLNMK-----------------ANLEHQYRSYGGNWSFA---- 227 (367)
T ss_pred CccEEEEeCCchHhHHHHHhhc-cCcceeEEeeEEEccCCcH-----------------HHHHHHHHHhCCCCccc----
Confidence 5789999999999999999998 5578888875553322111 11111111111 10000
Q ss_pred hhhhhHHHHhhccCCChhHHHHHHHhccCCccchHHhhhcccccccccCCceeEEEEeCCCCCccHHHHHHHHhcCCC-c
Q 024134 162 LFGHKFLTLKLYQLSPPEDLELAKMLVKPGLLFTDELSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNNPV-N 240 (272)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~-~ 240 (272)
+ ..+....+..............+ .+++....+.++|.++|.|..|.+..++....+...+|+ .
T Consensus 228 -~-~dY~~~gi~~~l~tp~f~~L~~i-------------vDP~~Y~~rL~~PK~ii~atgDeFf~pD~~~~y~d~L~G~K 292 (367)
T PF10142_consen 228 -F-QDYYNEGITQQLDTPEFDKLMQI-------------VDPYSYRDRLTMPKYIINATGDEFFVPDSSNFYYDKLPGEK 292 (367)
T ss_pred -h-hhhhHhCchhhcCCHHHHHHHHh-------------cCHHHHHHhcCccEEEEecCCCceeccCchHHHHhhCCCCe
Confidence 0 11111111111111122222222 222222333489999999999999999999989998885 5
Q ss_pred eEEEecCCCcccccCCCchHHHHHHHHHHhh
Q 024134 241 EVMAIKGADHMAMLSKPQPLSDCFSQIAHKY 271 (272)
Q Consensus 241 ~~~~~~~~gH~~~~~~p~~~~~~i~~fl~~~ 271 (272)
.+..+||++|..-. ..+.+.|..|+...
T Consensus 293 ~lr~vPN~~H~~~~---~~~~~~l~~f~~~~ 320 (367)
T PF10142_consen 293 YLRYVPNAGHSLIG---SDVVQSLRAFYNRI 320 (367)
T ss_pred eEEeCCCCCcccch---HHHHHHHHHHHHHH
Confidence 67889999999766 56777788887653
No 183
>COG2272 PnbA Carboxylesterase type B [Lipid metabolism]
Probab=98.25 E-value=3.2e-06 Score=66.48 Aligned_cols=107 Identities=18% Similarity=0.158 Sum_probs=67.7
Q ss_pred cCCCeEEEEecCC---CcchhHHhhHHHHHhCC-CeEEEEcCC-C-CCC---CCcc--c--ccccchhhch---HHHHHH
Q 024134 14 KKQKHFVLVHGSN---HGAWCWYKVKPRLEAAG-HRVTAMDLA-A-SGI---NMKK--I--QDVRSFYEYN---EPLLEI 77 (272)
Q Consensus 14 ~~~~~vv~lhG~~---~~~~~~~~~~~~l~~~g-~~v~~~d~~-G-~G~---s~~~--~--~~~~~~~~~~---~~~~~~ 77 (272)
.+.|++|+|||.+ +++.....-...|+++| +-|+++++| | .|. |... . .....+.|++ +.+.+-
T Consensus 92 ~~~PVmV~IHGG~y~~Gs~s~~~ydgs~La~~g~vVvVSvNYRLG~lGfL~~~~~~~~~~~~~n~Gl~DqilALkWV~~N 171 (491)
T COG2272 92 EKLPVMVYIHGGGYIMGSGSEPLYDGSALAARGDVVVVSVNYRLGALGFLDLSSLDTEDAFASNLGLLDQILALKWVRDN 171 (491)
T ss_pred CCCcEEEEEeccccccCCCcccccChHHHHhcCCEEEEEeCcccccceeeehhhccccccccccccHHHHHHHHHHHHHH
Confidence 4569999999985 33333223346688888 888888887 1 121 1111 0 0112344443 445555
Q ss_pred HHHh-cCCCcEEEEEeCcchHHHHHHHhhCc---cceeeeeeeeccCC
Q 024134 78 LASL-SADEKVILVGHSFGGLSVALAADKFP---HKISVAIFLTAFMP 121 (272)
Q Consensus 78 i~~l-~~~~~~~lvG~S~Gg~~a~~~a~~~p---~~v~~lvl~~~~~~ 121 (272)
|++. ++.++|.|+|+|.||+.++.+.+ .| ..++++|+.++...
T Consensus 172 Ie~FGGDp~NVTl~GeSAGa~si~~Lla-~P~AkGLF~rAi~~Sg~~~ 218 (491)
T COG2272 172 IEAFGGDPQNVTLFGESAGAASILTLLA-VPSAKGLFHRAIALSGAAS 218 (491)
T ss_pred HHHhCCCccceEEeeccchHHHHHHhhc-CccchHHHHHHHHhCCCCC
Confidence 6666 35678999999999998877764 34 46888888888754
No 184
>COG4553 DepA Poly-beta-hydroxyalkanoate depolymerase [Lipid metabolism]
Probab=98.18 E-value=0.0004 Score=51.14 Aligned_cols=103 Identities=12% Similarity=0.053 Sum_probs=71.6
Q ss_pred CCeEEEEecCCCc-chhHHhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcCCCcEEEEEeCc
Q 024134 16 QKHFVLVHGSNHG-AWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSADEKVILVGHSF 94 (272)
Q Consensus 16 ~~~vv~lhG~~~~-~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~lvG~S~ 94 (272)
.|.|+++-.+.++ +...+...+.|... ..|+.-|+-.--.-+...+ .++++|+++-+.+.+..+ +. .+++++.+.
T Consensus 103 dPkvLivapmsGH~aTLLR~TV~alLp~-~~vyitDW~dAr~Vp~~~G-~FdldDYIdyvie~~~~~-Gp-~~hv~aVCQ 178 (415)
T COG4553 103 DPKVLIVAPMSGHYATLLRGTVEALLPY-HDVYITDWVDARMVPLEAG-HFDLDDYIDYVIEMINFL-GP-DAHVMAVCQ 178 (415)
T ss_pred CCeEEEEecccccHHHHHHHHHHHhccc-cceeEeeccccceeecccC-CccHHHHHHHHHHHHHHh-CC-CCcEEEEec
Confidence 4566666665444 44567777887644 7899989865433333233 379999999999999999 43 378888887
Q ss_pred chH-----HHHHHHhhCccceeeeeeeeccCCC
Q 024134 95 GGL-----SVALAADKFPHKISVAIFLTAFMPD 122 (272)
Q Consensus 95 Gg~-----~a~~~a~~~p~~v~~lvl~~~~~~~ 122 (272)
-+. ++++.+...|..-.++++++++...
T Consensus 179 P~vPvLAAisLM~~~~~p~~PssMtlmGgPIDa 211 (415)
T COG4553 179 PTVPVLAAISLMEEDGDPNVPSSMTLMGGPIDA 211 (415)
T ss_pred CCchHHHHHHHHHhcCCCCCCceeeeecCcccc
Confidence 664 4455555677778899999987543
No 185
>PLN02213 sinapoylglucose-malate O-sinapoyltransferase/ carboxypeptidase
Probab=98.10 E-value=0.00045 Score=53.32 Aligned_cols=59 Identities=19% Similarity=0.134 Sum_probs=46.6
Q ss_pred CceeEEEEeCCCCCccHHHHHHHHhcCC------------------------C-ceEEEecCCCcccccCCCchHHHHHH
Q 024134 211 SVKRDFVGSDKDNCIPKEFQQWMIQNNP------------------------V-NEVMAIKGADHMAMLSKPQPLSDCFS 265 (272)
Q Consensus 211 ~~P~l~i~g~~D~~~~~~~~~~~~~~~~------------------------~-~~~~~~~~~gH~~~~~~p~~~~~~i~ 265 (272)
.++||+..|+.|.+++.-..+.+.+.+. + .+++.+-++||+.+ .+|+...+.+.
T Consensus 233 ~i~VliY~Gd~D~icn~~g~~~wi~~L~w~~~~~~~~w~~~~~~~G~vk~y~~~ltf~~V~~AGHmV~-~qP~~al~m~~ 311 (319)
T PLN02213 233 GYRSLIYSGDHDIAVPFLATQAWIRSLNYSPIHNWRPWMINNQIAGYTRAYSNKMTFATIKAGGHTAE-YRPNETFIMFQ 311 (319)
T ss_pred CceEEEEECCcCeeCCcHhHHHHHHhcCCCCCCCCccccCCCEeeeEEEEecCcceEEEEcCCCCCCC-cCHHHHHHHHH
Confidence 5899999999999998766655554331 2 45677779999996 58999999999
Q ss_pred HHHHh
Q 024134 266 QIAHK 270 (272)
Q Consensus 266 ~fl~~ 270 (272)
+|+..
T Consensus 312 ~fi~~ 316 (319)
T PLN02213 312 RWISG 316 (319)
T ss_pred HHHcC
Confidence 99864
No 186
>PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function.
Probab=98.07 E-value=0.00078 Score=52.45 Aligned_cols=36 Identities=25% Similarity=0.283 Sum_probs=31.5
Q ss_pred CcEEEEEeCcchHHHHHHHhhCccceeeeeeeeccC
Q 024134 85 EKVILVGHSFGGLSVALAADKFPHKISVAIFLTAFM 120 (272)
Q Consensus 85 ~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~ 120 (272)
-|++++|+|.||.+|...|.-.|-.+++++=-++..
T Consensus 184 lp~I~~G~s~G~yla~l~~k~aP~~~~~~iDns~~~ 219 (403)
T PF11144_consen 184 LPKIYIGSSHGGYLAHLCAKIAPWLFDGVIDNSSYA 219 (403)
T ss_pred CcEEEEecCcHHHHHHHHHhhCccceeEEEecCccc
Confidence 489999999999999999999999999988665543
No 187
>PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants. Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis.
Probab=98.06 E-value=0.00077 Score=48.81 Aligned_cols=91 Identities=21% Similarity=0.170 Sum_probs=57.3
Q ss_pred eEEEEecCCCc--c-hhHHhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchH----HHHHHHHHh---c----C
Q 024134 18 HFVLVHGSNHG--A-WCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNE----PLLEILASL---S----A 83 (272)
Q Consensus 18 ~vv~lhG~~~~--~-~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~----~~~~~i~~l---~----~ 83 (272)
.|-|+-|.... + -.|+.+.+.|+++||.|++.-+.- | .+-...+. .....++.+ . .
T Consensus 19 vihFiGGaf~ga~P~itYr~lLe~La~~Gy~ViAtPy~~-t---------fDH~~~A~~~~~~f~~~~~~L~~~~~~~~~ 88 (250)
T PF07082_consen 19 VIHFIGGAFVGAAPQITYRYLLERLADRGYAVIATPYVV-T---------FDHQAIAREVWERFERCLRALQKRGGLDPA 88 (250)
T ss_pred EEEEcCcceeccCcHHHHHHHHHHHHhCCcEEEEEecCC-C---------CcHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 55566665322 2 348999999999999999986641 1 11111222 222222222 1 1
Q ss_pred CCcEEEEEeCcchHHHHHHHhhCccceeeeeeeec
Q 024134 84 DEKVILVGHSFGGLSVALAADKFPHKISVAIFLTA 118 (272)
Q Consensus 84 ~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~ 118 (272)
.-|++-+|||+|+.+-+.+...++..-++-|+++-
T Consensus 89 ~lP~~~vGHSlGcklhlLi~s~~~~~r~gniliSF 123 (250)
T PF07082_consen 89 YLPVYGVGHSLGCKLHLLIGSLFDVERAGNILISF 123 (250)
T ss_pred cCCeeeeecccchHHHHHHhhhccCcccceEEEec
Confidence 24788999999999888888777655567777764
No 188
>KOG3967 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.06 E-value=0.0001 Score=51.50 Aligned_cols=104 Identities=24% Similarity=0.278 Sum_probs=63.4
Q ss_pred CCCeEEEEecCCCc-chhHH---------------hhHHHHHhCCCeEEEEcCCC---CCCCCc-ccccccchhhchHHH
Q 024134 15 KQKHFVLVHGSNHG-AWCWY---------------KVKPRLEAAGHRVTAMDLAA---SGINMK-KIQDVRSFYEYNEPL 74 (272)
Q Consensus 15 ~~~~vv~lhG~~~~-~~~~~---------------~~~~~l~~~g~~v~~~d~~G---~G~s~~-~~~~~~~~~~~~~~~ 74 (272)
....+|+|||.|.- +..|. ++++.-.+.||.|++.+.-- +-.+.. +.....+..+.+.-+
T Consensus 100 ~~kLlVLIHGSGvVrAGQWARrLIIN~~Ld~GTQiPyi~rAv~~Gygviv~N~N~~~kfye~k~np~kyirt~veh~~yv 179 (297)
T KOG3967|consen 100 PQKLLVLIHGSGVVRAGQWARRLIINEDLDSGTQIPYIKRAVAEGYGVIVLNPNRERKFYEKKRNPQKYIRTPVEHAKYV 179 (297)
T ss_pred ccceEEEEecCceEecchHhhhhhhccccccCCcChHHHHHHHcCCcEEEeCCchhhhhhhcccCcchhccchHHHHHHH
Confidence 34589999998843 33452 34455556899999987431 111111 111111222222221
Q ss_pred -HHHHHHhcCCCcEEEEEeCcchHHHHHHHhhCcc--ceeeeeeeecc
Q 024134 75 -LEILASLSADEKVILVGHSFGGLSVALAADKFPH--KISVAIFLTAF 119 (272)
Q Consensus 75 -~~~i~~l~~~~~~~lvG~S~Gg~~a~~~a~~~p~--~v~~lvl~~~~ 119 (272)
..++.-. ..+.+.++.||.||...+.+..++|+ +|.++.+.+++
T Consensus 180 w~~~v~pa-~~~sv~vvahsyGG~~t~~l~~~f~~d~~v~aialTDs~ 226 (297)
T KOG3967|consen 180 WKNIVLPA-KAESVFVVAHSYGGSLTLDLVERFPDDESVFAIALTDSA 226 (297)
T ss_pred HHHHhccc-CcceEEEEEeccCChhHHHHHHhcCCccceEEEEeeccc
Confidence 2223323 66889999999999999999999985 67777777765
No 189
>COG0627 Predicted esterase [General function prediction only]
Probab=98.01 E-value=2.9e-05 Score=59.03 Aligned_cols=109 Identities=16% Similarity=0.224 Sum_probs=69.3
Q ss_pred CCCeEEEEecCCCcchhH---HhhHHHHHhCCCeEEEEcCC--------------CCCCCCccc------cc-ccchhhc
Q 024134 15 KQKHFVLVHGSNHGAWCW---YKVKPRLEAAGHRVTAMDLA--------------ASGINMKKI------QD-VRSFYEY 70 (272)
Q Consensus 15 ~~~~vv~lhG~~~~~~~~---~~~~~~l~~~g~~v~~~d~~--------------G~G~s~~~~------~~-~~~~~~~ 70 (272)
.-|+++++||..++...| ..+-......|+.++++|-. |-+.|-... .. .+.++++
T Consensus 53 ~ipV~~~l~G~t~~~~~~~~~~g~~~~a~~~g~~~~~p~t~~~~~~~~~~vv~p~G~~~sfY~d~~~~~~~~~~~q~~tf 132 (316)
T COG0627 53 DIPVLYLLSGLTCNEPNVYLLDGLRRQADESGWAVVTPDTSPRGAGVNISVVMPLGGGASFYSDWTQPPWASGPYQWETF 132 (316)
T ss_pred CCCEEEEeCCCCCCCCceEeccchhhhhhhcCeEEecCCCCcccCCCCccccccCCCccceecccccCccccCccchhHH
Confidence 347888899998875443 34445555667778876332 222221111 01 1445554
Q ss_pred -hHHHHHHHHHhcC-C---CcEEEEEeCcchHHHHHHHhhCccceeeeeeeeccCCCC
Q 024134 71 -NEPLLEILASLSA-D---EKVILVGHSFGGLSVALAADKFPHKISVAIFLTAFMPDT 123 (272)
Q Consensus 71 -~~~~~~~i~~l~~-~---~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~ 123 (272)
.+++-..+++... . .+-.++||||||.=|+.+|.++|++++.+...++.+...
T Consensus 133 l~~ELP~~~~~~f~~~~~~~~~aI~G~SMGG~GAl~lA~~~pd~f~~~sS~Sg~~~~s 190 (316)
T COG0627 133 LTQELPALWEAAFPADGTGDGRAIAGHSMGGYGALKLALKHPDRFKSASSFSGILSPS 190 (316)
T ss_pred HHhhhhHHHHHhcCcccccCCceeEEEeccchhhhhhhhhCcchhceecccccccccc
Confidence 3355544443312 1 278899999999999999999999999999888875543
No 190
>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases. Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....
Probab=98.00 E-value=3e-05 Score=64.63 Aligned_cols=106 Identities=16% Similarity=0.087 Sum_probs=61.2
Q ss_pred CCCeEEEEecCCC---cc-hhHHhhHHHHHhCCCeEEEEcCC----CCCCCCccc--ccccchhhchHHHHHHHHHh---
Q 024134 15 KQKHFVLVHGSNH---GA-WCWYKVKPRLEAAGHRVTAMDLA----ASGINMKKI--QDVRSFYEYNEPLLEILASL--- 81 (272)
Q Consensus 15 ~~~~vv~lhG~~~---~~-~~~~~~~~~l~~~g~~v~~~d~~----G~G~s~~~~--~~~~~~~~~~~~~~~~i~~l--- 81 (272)
..|++|+|||.+. ++ .....-...+++++.-||++.+| |+-.+.... ...+.+.|+...+.-+-+.+
T Consensus 124 ~lPV~v~ihGG~f~~G~~~~~~~~~~~~~~~~~vivVt~nYRlg~~Gfl~~~~~~~~~gN~Gl~Dq~~AL~WV~~nI~~F 203 (535)
T PF00135_consen 124 KLPVMVWIHGGGFMFGSGSFPPYDGASLAASKDVIVVTINYRLGAFGFLSLGDLDAPSGNYGLLDQRLALKWVQDNIAAF 203 (535)
T ss_dssp SEEEEEEE--STTTSSCTTSGGGHTHHHHHHHTSEEEEE----HHHHH-BSSSTTSHBSTHHHHHHHHHHHHHHHHGGGG
T ss_pred ccceEEEeecccccCCCcccccccccccccCCCEEEEEecccccccccccccccccCchhhhhhhhHHHHHHHHhhhhhc
Confidence 3589999999762 22 12223334456678999999998 333222111 12355666655554444444
Q ss_pred -cCCCcEEEEEeCcchHHHHHHHhh--CccceeeeeeeeccC
Q 024134 82 -SADEKVILVGHSFGGLSVALAADK--FPHKISVAIFLTAFM 120 (272)
Q Consensus 82 -~~~~~~~lvG~S~Gg~~a~~~a~~--~p~~v~~lvl~~~~~ 120 (272)
++.++|.|+|||.||..+..+... ....++++|+.++..
T Consensus 204 GGDp~~VTl~G~SAGa~sv~~~l~sp~~~~LF~raI~~SGs~ 245 (535)
T PF00135_consen 204 GGDPDNVTLFGQSAGAASVSLLLLSPSSKGLFHRAILQSGSA 245 (535)
T ss_dssp TEEEEEEEEEEETHHHHHHHHHHHGGGGTTSBSEEEEES--T
T ss_pred ccCCcceeeeeecccccccceeeecccccccccccccccccc
Confidence 356789999999999877666544 124799999999853
No 191
>KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism]
Probab=97.95 E-value=0.00068 Score=54.17 Aligned_cols=59 Identities=20% Similarity=0.189 Sum_probs=47.3
Q ss_pred ceeEEEEeCCCCCccHHHHHHHHhcC-------------------------CCceEEEecCCCcccccCCCchHHHHHHH
Q 024134 212 VKRDFVGSDKDNCIPKEFQQWMIQNN-------------------------PVNEVMAIKGADHMAMLSKPQPLSDCFSQ 266 (272)
Q Consensus 212 ~P~l~i~g~~D~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~gH~~~~~~p~~~~~~i~~ 266 (272)
.|+++..|+.|.++|.-..+.+.+.+ .+..+..+.|+||+.+.++|+.....+..
T Consensus 364 ~rvliysGD~D~~~p~~gt~~~i~~L~~~~~~~~~pW~~~~~qvaG~~~~Y~~ltf~tVrGaGH~VP~~~p~~al~m~~~ 443 (454)
T KOG1282|consen 364 YRVLIYSGDHDLVVPFLGTQAWIKSLNLSITDEWRPWYHKGGQVAGYTKTYGGLTFATVRGAGHMVPYDKPESALIMFQR 443 (454)
T ss_pred eEEEEEeCCcceeCcchhhHHHHHhccCccccCccCCccCCCceeeeEEEecCEEEEEEeCCcccCCCCCcHHHHHHHHH
Confidence 79999999999999977666543322 11345778899999999999999999999
Q ss_pred HHHh
Q 024134 267 IAHK 270 (272)
Q Consensus 267 fl~~ 270 (272)
|+..
T Consensus 444 fl~g 447 (454)
T KOG1282|consen 444 FLNG 447 (454)
T ss_pred HHcC
Confidence 9874
No 192
>KOG2183 consensus Prolylcarboxypeptidase (angiotensinase C) [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=97.92 E-value=6.2e-05 Score=57.90 Aligned_cols=103 Identities=17% Similarity=0.117 Sum_probs=75.9
Q ss_pred CeEEEEecCCCcchhHH---hhHHHHHh-CCCeEEEEcCCCCCCCCcccc---------cccchhhchHHHHHHHHHhc-
Q 024134 17 KHFVLVHGSNHGAWCWY---KVKPRLEA-AGHRVTAMDLAASGINMKKIQ---------DVRSFYEYNEPLLEILASLS- 82 (272)
Q Consensus 17 ~~vv~lhG~~~~~~~~~---~~~~~l~~-~g~~v~~~d~~G~G~s~~~~~---------~~~~~~~~~~~~~~~i~~l~- 82 (272)
.||+|--|.-++-+.|. .++-.+++ .+--++..+.|-+|+|-+--. ...+.++-.+|...++..+.
T Consensus 81 gPIffYtGNEGdie~Fa~ntGFm~D~Ap~~~AllVFaEHRyYGeS~PFG~~s~k~~~hlgyLtseQALADfA~ll~~lK~ 160 (492)
T KOG2183|consen 81 GPIFFYTGNEGDIEWFANNTGFMWDLAPELKALLVFAEHRYYGESLPFGSQSYKDARHLGYLTSEQALADFAELLTFLKR 160 (492)
T ss_pred CceEEEeCCcccHHHHHhccchHHhhhHhhCceEEEeehhccccCCCCcchhccChhhhccccHHHHHHHHHHHHHHHhh
Confidence 68999999887776653 23334432 346788999999999864221 12356677777888887772
Q ss_pred ----CCCcEEEEEeCcchHHHHHHHhhCccceeeeeeeecc
Q 024134 83 ----ADEKVILVGHSFGGLSVALAADKFPHKISVAIFLTAF 119 (272)
Q Consensus 83 ----~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~ 119 (272)
...+++.+|-|.||+++..+=.+||..|.|....+++
T Consensus 161 ~~~a~~~pvIafGGSYGGMLaAWfRlKYPHiv~GAlAaSAP 201 (492)
T KOG2183|consen 161 DLSAEASPVIAFGGSYGGMLAAWFRLKYPHIVLGALAASAP 201 (492)
T ss_pred ccccccCcEEEecCchhhHHHHHHHhcChhhhhhhhhccCc
Confidence 4568999999999999999999999988877655544
No 193
>PLN02517 phosphatidylcholine-sterol O-acyltransferase
Probab=97.84 E-value=4.6e-05 Score=61.81 Aligned_cols=90 Identities=14% Similarity=0.155 Sum_probs=56.0
Q ss_pred hHHhhHHHHHhCCCeEEEEcCCCCCCCCccc-ccccchhhchHHHHHHHHHh---cCCCcEEEEEeCcchHHHHHHHhhC
Q 024134 31 CWYKVKPRLEAAGHRVTAMDLAASGINMKKI-QDVRSFYEYNEPLLEILASL---SADEKVILVGHSFGGLSVALAADKF 106 (272)
Q Consensus 31 ~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~-~~~~~~~~~~~~~~~~i~~l---~~~~~~~lvG~S~Gg~~a~~~a~~~ 106 (272)
.|..+++.|++.||. --++.|....-... .....-+++-..+...|+.. .+.+|++|+||||||.+++.+....
T Consensus 157 vw~kLIe~L~~iGY~--~~nL~gAPYDWRls~~~le~rd~YF~rLK~lIE~ay~~nggkKVVLV~HSMGglv~lyFL~wv 234 (642)
T PLN02517 157 VWAVLIANLARIGYE--EKNMYMAAYDWRLSFQNTEVRDQTLSRLKSNIELMVATNGGKKVVVVPHSMGVLYFLHFMKWV 234 (642)
T ss_pred eHHHHHHHHHHcCCC--CCceeecccccccCccchhhhhHHHHHHHHHHHHHHHHcCCCeEEEEEeCCchHHHHHHHHhc
Confidence 468999999998886 23333322111111 00112244445555666544 3468999999999999999987632
Q ss_pred c---------------cceeeeeeeeccCCC
Q 024134 107 P---------------HKISVAIFLTAFMPD 122 (272)
Q Consensus 107 p---------------~~v~~lvl~~~~~~~ 122 (272)
. ..|++.|.++++...
T Consensus 235 ~~~~~~gG~gG~~W~dKyI~s~I~Iagp~lG 265 (642)
T PLN02517 235 EAPAPMGGGGGPGWCAKHIKAVMNIGGPFLG 265 (642)
T ss_pred cccccccCCcchHHHHHHHHHheecccccCC
Confidence 1 247889999886433
No 194
>KOG2521 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.76 E-value=0.0021 Score=49.49 Aligned_cols=237 Identities=17% Similarity=0.113 Sum_probs=118.6
Q ss_pred ccCCCeEEEEecCCCcchhH-HhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhc-CCCcEEEE
Q 024134 13 AKKQKHFVLVHGSNHGAWCW-YKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLS-ADEKVILV 90 (272)
Q Consensus 13 ~~~~~~vv~lhG~~~~~~~~-~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~-~~~~~~lv 90 (272)
.++..+||++=||.+..+.+ ........++|+.++.+-.|-+-..........+......-+..++.... ...++++-
T Consensus 35 ~~s~k~Iv~~~gWag~~~r~l~ky~~~Yq~~g~~~~~~tap~~~~~~~~s~~~~sl~~~~~~l~~L~~~~~~~~~pi~fh 114 (350)
T KOG2521|consen 35 GESEKPIVVLLGWAGAIDRNLMKYSKIYQDKGYIVVRITAPCPSVFLSASRRILSLSLASTRLSELLSDYNSDPCPIIFH 114 (350)
T ss_pred CCccccEEEEeeeccccchhHHHHHHHHhcCCceEEEecCcccccccccccccchhhHHHHHHHHHhhhccCCcCceEEE
Confidence 34444666666666665554 45666667789999999888665443333332344555566666666652 35677777
Q ss_pred EeCcchHHHHHHH----hhC-c---cceeeeeeeeccCCCCCCCchhhhhhcccCCc----hhhhhhhhhhccccCCCcc
Q 024134 91 GHSFGGLSVALAA----DKF-P---HKISVAIFLTAFMPDTKHQPSYVVERFSESIP----REERLDTQYSIIDESNPSR 158 (272)
Q Consensus 91 G~S~Gg~~a~~~a----~~~-p---~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 158 (272)
-.|+||...+... .++ | +.+.++++.+.+......... ........ ...|.............
T Consensus 115 ~FS~ng~~~~~si~~~~~~~~~~~~~~~~~~~fdS~p~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~i~~~~~~-- 189 (350)
T KOG2521|consen 115 VFSGNGVRLMYSISLQLIKHEPKAAQLSGGIIFDSAPARSSPVQLG---WAVSFSSPPDDYVARWARLNYHITLLTMA-- 189 (350)
T ss_pred EecCCceeehHHHHHHHhhcCchhHhhcCCceEeccccccchhhhc---ceeccccCchhhHHHHHhcCeEEEEEEee--
Confidence 9999997544332 122 3 346667766654322111110 01000000 00011111100000000
Q ss_pred chhhhhhhHHHHhhccCCChhHHHHHHHhccCCccchHHhhhcccccccccCCceeEEEEeCCCCCccHHHHHHHHhcC-
Q 024134 159 MSILFGHKFLTLKLYQLSPPEDLELAKMLVKPGLLFTDELSKANEFSNEGYGSVKRDFVGSDKDNCIPKEFQQWMIQNN- 237 (272)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~- 237 (272)
........+........ ......+.+.+..... ....+.+.+++..|.++|.+..+++.+..
T Consensus 190 -~~~~~~~~~~~~~~~~~-----------~~r~~~~~~r~~~~~~-----~~~~~~ly~~s~~d~v~~~~~ie~f~~~~~ 252 (350)
T KOG2521|consen 190 -GNEGGAYLLGPLAEKIS-----------MSRKYHFLDRYEEQRN-----ELPWNQLYLYSDNDDVLPADEIEKFIALRR 252 (350)
T ss_pred -ecccchhhhhhhhhccc-----------cccchHHHHHHHhhhh-----cccccceeecCCccccccHHHHHHHHHHHH
Confidence 00000000000000000 0000001111111100 01457889999999999998887774432
Q ss_pred ---CCceEEEecCCCccccc-CCCchHHHHHHHHHHhh
Q 024134 238 ---PVNEVMAIKGADHMAML-SKPQPLSDCFSQIAHKY 271 (272)
Q Consensus 238 ---~~~~~~~~~~~gH~~~~-~~p~~~~~~i~~fl~~~ 271 (272)
-+++.+-+.++-|..+. ..|..+.+...+|+++.
T Consensus 253 ~~g~~v~s~~~~ds~H~~h~r~~p~~y~~~~~~Fl~~~ 290 (350)
T KOG2521|consen 253 EKGVNVKSVKFKDSEHVAHFRSFPKTYLKKCSEFLRSV 290 (350)
T ss_pred hcCceEEEeeccCccceeeeccCcHHHHHHHHHHHHhc
Confidence 24455666688898776 67899999999999864
No 195
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=97.76 E-value=6.3e-05 Score=51.44 Aligned_cols=51 Identities=24% Similarity=0.283 Sum_probs=36.1
Q ss_pred chHHHHHHHHHh---cCCCcEEEEEeCcchHHHHHHHhhCcc----ceeeeeeeeccC
Q 024134 70 YNEPLLEILASL---SADEKVILVGHSFGGLSVALAADKFPH----KISVAIFLTAFM 120 (272)
Q Consensus 70 ~~~~~~~~i~~l---~~~~~~~lvG~S~Gg~~a~~~a~~~p~----~v~~lvl~~~~~ 120 (272)
+.+.+...++.. .+..+++++|||+||.+|..++...+. .+..++..+++.
T Consensus 10 ~~~~i~~~~~~~~~~~p~~~i~v~GHSlGg~lA~l~a~~~~~~~~~~~~~~~~fg~p~ 67 (153)
T cd00741 10 LANLVLPLLKSALAQYPDYKIHVTGHSLGGALAGLAGLDLRGRGLGRLVRVYTFGPPR 67 (153)
T ss_pred HHHHHHHHHHHHHHHCCCCeEEEEEcCHHHHHHHHHHHHHHhccCCCceEEEEeCCCc
Confidence 344444444443 167899999999999999999887754 466677777653
No 196
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=97.76 E-value=0.0014 Score=57.64 Aligned_cols=96 Identities=15% Similarity=0.179 Sum_probs=72.2
Q ss_pred cCCCeEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcCCCcEEEEEeC
Q 024134 14 KKQKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSADEKVILVGHS 93 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~lvG~S 93 (272)
.+.|++.|+|.+-+....+..++..| ..|.||.-........++++.+.-...-++++.+..|..++|+|
T Consensus 2121 se~~~~Ffv~pIEG~tt~l~~la~rl----------e~PaYglQ~T~~vP~dSies~A~~yirqirkvQP~GPYrl~GYS 2190 (2376)
T KOG1202|consen 2121 SEEPPLFFVHPIEGFTTALESLASRL----------EIPAYGLQCTEAVPLDSIESLAAYYIRQIRKVQPEGPYRLAGYS 2190 (2376)
T ss_pred ccCCceEEEeccccchHHHHHHHhhc----------CCcchhhhccccCCcchHHHHHHHHHHHHHhcCCCCCeeeeccc
Confidence 56799999999988777776666655 24555543333333468999999888888888677899999999
Q ss_pred cchHHHHHHHhhCc--cceeeeeeeecc
Q 024134 94 FGGLSVALAADKFP--HKISVAIFLTAF 119 (272)
Q Consensus 94 ~Gg~~a~~~a~~~p--~~v~~lvl~~~~ 119 (272)
+|+.++..+|.... +....+|++++.
T Consensus 2191 yG~~l~f~ma~~Lqe~~~~~~lillDGs 2218 (2376)
T KOG1202|consen 2191 YGACLAFEMASQLQEQQSPAPLILLDGS 2218 (2376)
T ss_pred hhHHHHHHHHHHHHhhcCCCcEEEecCc
Confidence 99999999987543 335668888875
No 197
>PF06259 Abhydrolase_8: Alpha/beta hydrolase; InterPro: IPR010427 This is a family of uncharacterised proteins found in Actinobacteria. Computational analysis suggests that they may belong to the alpha-beta hydrolase family of enzymes, as they are predicted to form the core secondary structures and catalytic machinery common to these proteins []. Genomic context suggests that they may function as lipases, controlling the concentration of their putative phospholipid substrates.
Probab=97.73 E-value=0.0011 Score=46.04 Aligned_cols=106 Identities=18% Similarity=0.182 Sum_probs=66.4
Q ss_pred CCCeEEEEecCCCcchhHH--------hhHHHHH------hCCCeEEEEcCCCCCCCCc-cc--ccccchhhchHHHHHH
Q 024134 15 KQKHFVLVHGSNHGAWCWY--------KVKPRLE------AAGHRVTAMDLAASGINMK-KI--QDVRSFYEYNEPLLEI 77 (272)
Q Consensus 15 ~~~~vv~lhG~~~~~~~~~--------~~~~~l~------~~g~~v~~~d~~G~G~s~~-~~--~~~~~~~~~~~~~~~~ 77 (272)
...+.++++|.+.+-.... .+...+. ..+-.+-++-+.||-.... .. .....-++-+.++.++
T Consensus 18 A~~Vav~VPG~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vAvV~WlgYdaP~~~~~~a~~~~~A~~ga~~L~~f 97 (177)
T PF06259_consen 18 ADHVAVLVPGTGTTLDSFLGGMDDEARALRAAAARAARAAGPGGSVAVVAWLGYDAPAGGLPDAASPGYARAGAPRLARF 97 (177)
T ss_pred cCeeEEEcCCCCCCcccccchhHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcCCCCCCCccccccCchHHHHHHHHHHHH
Confidence 4568899999987664321 1111111 1223555555555543311 01 1112345556677888
Q ss_pred HHHhc----CCCcEEEEEeCcchHHHHHHHhhCccceeeeeeeeccC
Q 024134 78 LASLS----ADEKVILVGHSFGGLSVALAADKFPHKISVAIFLTAFM 120 (272)
Q Consensus 78 i~~l~----~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~ 120 (272)
++.|. ....+.++|||+|+.++-.++...+..++.+|+++++.
T Consensus 98 ~~gl~a~~~~~~~~tv~GHSYGS~v~G~A~~~~~~~vddvv~~GSPG 144 (177)
T PF06259_consen 98 LDGLRATHGPDAHLTVVGHSYGSTVVGLAAQQGGLRVDDVVLVGSPG 144 (177)
T ss_pred HHHhhhhcCCCCCEEEEEecchhHHHHHHhhhCCCCcccEEEECCCC
Confidence 87772 45589999999999999998877677899999998753
No 198
>COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]
Probab=97.72 E-value=0.00027 Score=57.21 Aligned_cols=105 Identities=14% Similarity=0.151 Sum_probs=68.5
Q ss_pred CCCeEEEEecCCCcch--hHHhhHHHHHhCCCeEEEEcCCCCCCCCcc---c----ccccchhhchHHHHHHHHHh-cCC
Q 024134 15 KQKHFVLVHGSNHGAW--CWYKVKPRLEAAGHRVTAMDLAASGINMKK---I----QDVRSFYEYNEPLLEILASL-SAD 84 (272)
Q Consensus 15 ~~~~vv~lhG~~~~~~--~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~---~----~~~~~~~~~~~~~~~~i~~l-~~~ 84 (272)
+.|++|+--|...-+. .|........++|...+..+.||=|+=... . .....++|+++-..++++.- ...
T Consensus 420 ~~pTll~aYGGF~vsltP~fs~~~~~WLerGg~~v~ANIRGGGEfGp~WH~Aa~k~nrq~vfdDf~AVaedLi~rgitsp 499 (648)
T COG1505 420 ENPTLLYAYGGFNISLTPRFSGSRKLWLERGGVFVLANIRGGGEFGPEWHQAGMKENKQNVFDDFIAVAEDLIKRGITSP 499 (648)
T ss_pred CCceEEEeccccccccCCccchhhHHHHhcCCeEEEEecccCCccCHHHHHHHhhhcchhhhHHHHHHHHHHHHhCCCCH
Confidence 5677776666543332 255555556679999999999997764321 1 11223444444444444432 234
Q ss_pred CcEEEEEeCcchHHHHHHHhhCccceeeeeeeecc
Q 024134 85 EKVILVGHSFGGLSVALAADKFPHKISVAIFLTAF 119 (272)
Q Consensus 85 ~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~ 119 (272)
+++.+.|-|=||.+.-.+..++|+.+.++|+--|.
T Consensus 500 e~lgi~GgSNGGLLvg~alTQrPelfgA~v~evPl 534 (648)
T COG1505 500 EKLGIQGGSNGGLLVGAALTQRPELFGAAVCEVPL 534 (648)
T ss_pred HHhhhccCCCCceEEEeeeccChhhhCceeeccch
Confidence 57899999999999888888999999888866654
No 199
>KOG2182 consensus Hydrolytic enzymes of the alpha/beta hydrolase fold [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=97.63 E-value=0.00061 Score=54.00 Aligned_cols=107 Identities=18% Similarity=0.174 Sum_probs=79.8
Q ss_pred cCCCeEEEEecCCCcchhHH-----hhHHHHHhCCCeEEEEcCCCCCCCCcccc------cccchhhchHHHHHHHHHhc
Q 024134 14 KKQKHFVLVHGSNHGAWCWY-----KVKPRLEAAGHRVTAMDLAASGINMKKIQ------DVRSFYEYNEPLLEILASLS 82 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~~~-----~~~~~l~~~g~~v~~~d~~G~G~s~~~~~------~~~~~~~~~~~~~~~i~~l~ 82 (272)
.++|..|+|-|=|.-...|. .+...-.+.|-.|+..++|-+|.|.+... ...+..+...|+.++|+++.
T Consensus 84 ~~gPiFLmIGGEgp~~~~wv~~~~~~~~~~AkkfgA~v~~lEHRFYG~S~P~~~~st~nlk~LSs~QALaDla~fI~~~n 163 (514)
T KOG2182|consen 84 PGGPIFLMIGGEGPESDKWVGNENLTWLQWAKKFGATVFQLEHRFYGQSSPIGDLSTSNLKYLSSLQALADLAEFIKAMN 163 (514)
T ss_pred CCCceEEEEcCCCCCCCCccccCcchHHHHHHHhCCeeEEeeeeccccCCCCCCCcccchhhhhHHHHHHHHHHHHHHHH
Confidence 56777888877665554452 22222234578999999999998855432 22467788899999999882
Q ss_pred ------CCCcEEEEEeCcchHHHHHHHhhCccceeeeeeeeccC
Q 024134 83 ------ADEKVILVGHSFGGLSVALAADKFPHKISVAIFLTAFM 120 (272)
Q Consensus 83 ------~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~ 120 (272)
...|.+..|-|.-|.++..+=.++|+.+.+-|..++++
T Consensus 164 ~k~n~~~~~~WitFGgSYsGsLsAW~R~~yPel~~GsvASSapv 207 (514)
T KOG2182|consen 164 AKFNFSDDSKWITFGGSYSGSLSAWFREKYPELTVGSVASSAPV 207 (514)
T ss_pred hhcCCCCCCCeEEECCCchhHHHHHHHHhCchhheeecccccce
Confidence 23489999999999999999999999999888777654
No 200
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=97.50 E-value=0.00021 Score=48.04 Aligned_cols=37 Identities=30% Similarity=0.555 Sum_probs=27.4
Q ss_pred hchHHHHHHHHHhcCCCcEEEEEeCcchHHHHHHHhhC
Q 024134 69 EYNEPLLEILASLSADEKVILVGHSFGGLSVALAADKF 106 (272)
Q Consensus 69 ~~~~~~~~~i~~l~~~~~~~lvG~S~Gg~~a~~~a~~~ 106 (272)
+..+.+.++++.. ...++++.|||+||.+|..++...
T Consensus 49 ~~~~~l~~~~~~~-~~~~i~itGHSLGGalA~l~a~~l 85 (140)
T PF01764_consen 49 QILDALKELVEKY-PDYSIVITGHSLGGALASLAAADL 85 (140)
T ss_dssp HHHHHHHHHHHHS-TTSEEEEEEETHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc-cCccchhhccchHHHHHHHHHHhh
Confidence 4445555555555 567899999999999998888753
No 201
>KOG2369 consensus Lecithin:cholesterol acyltransferase (LCAT)/Acyl-ceramide synthase [Lipid transport and metabolism]
Probab=97.50 E-value=0.00025 Score=55.79 Aligned_cols=84 Identities=21% Similarity=0.320 Sum_probs=57.3
Q ss_pred hhHHhhHHHHHhCCCe------EEEEcCCCCCCCCcccccccchhhchHHHHHHHHHh---cCCCcEEEEEeCcchHHHH
Q 024134 30 WCWYKVKPRLEAAGHR------VTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASL---SADEKVILVGHSFGGLSVA 100 (272)
Q Consensus 30 ~~~~~~~~~l~~~g~~------v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l---~~~~~~~lvG~S~Gg~~a~ 100 (272)
..|..+++.|..-||+ -..+|+|= |.... ...+++...+...|+.. .+.+|++||+||||+.+.+
T Consensus 124 ~~w~~~i~~lv~~GYe~~~~l~ga~YDwRl---s~~~~---e~rd~yl~kLK~~iE~~~~~~G~kkVvlisHSMG~l~~l 197 (473)
T KOG2369|consen 124 WYWHELIENLVGIGYERGKTLFGAPYDWRL---SYHNS---EERDQYLSKLKKKIETMYKLNGGKKVVLISHSMGGLYVL 197 (473)
T ss_pred HHHHHHHHHHHhhCcccCceeeccccchhh---ccCCh---hHHHHHHHHHHHHHHHHHHHcCCCceEEEecCCccHHHH
Confidence 3688899999887876 34567772 11111 23344455555555543 3669999999999999999
Q ss_pred HHHhhCcc--------ceeeeeeeecc
Q 024134 101 LAADKFPH--------KISVAIFLTAF 119 (272)
Q Consensus 101 ~~a~~~p~--------~v~~lvl~~~~ 119 (272)
.+...+++ .+++.|-++++
T Consensus 198 yFl~w~~~~~~~W~~k~I~sfvnig~p 224 (473)
T KOG2369|consen 198 YFLKWVEAEGPAWCDKYIKSFVNIGAP 224 (473)
T ss_pred HHHhcccccchhHHHHHHHHHHccCch
Confidence 99988876 36677766654
No 202
>PF11187 DUF2974: Protein of unknown function (DUF2974); InterPro: IPR024499 This family of proteins has no known function.
Probab=97.36 E-value=0.00062 Score=49.43 Aligned_cols=36 Identities=28% Similarity=0.273 Sum_probs=30.1
Q ss_pred CcEEEEEeCcchHHHHHHHhhCc----cceeeeeeeeccC
Q 024134 85 EKVILVGHSFGGLSVALAADKFP----HKISVAIFLTAFM 120 (272)
Q Consensus 85 ~~~~lvG~S~Gg~~a~~~a~~~p----~~v~~lvl~~~~~ 120 (272)
+++++.|||.||.+|..+|...+ ++|.+++..+++.
T Consensus 84 ~~i~v~GHSkGGnLA~yaa~~~~~~~~~rI~~vy~fDgPG 123 (224)
T PF11187_consen 84 GKIYVTGHSKGGNLAQYAAANCDDEIQDRISKVYSFDGPG 123 (224)
T ss_pred CCEEEEEechhhHHHHHHHHHccHHHhhheeEEEEeeCCC
Confidence 46999999999999999998743 5788988888753
No 203
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=97.31 E-value=0.0004 Score=50.80 Aligned_cols=38 Identities=26% Similarity=0.474 Sum_probs=34.3
Q ss_pred CCCcEEEEEeCcchHHHHHHHhhCccceeeeeeeeccC
Q 024134 83 ADEKVILVGHSFGGLSVALAADKFPHKISVAIFLTAFM 120 (272)
Q Consensus 83 ~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~ 120 (272)
+.++-.++|||+||.+++.....+|+.+...++++|..
T Consensus 135 ~~~~~~i~GhSlGGLfvl~aLL~~p~~F~~y~~~SPSl 172 (264)
T COG2819 135 NSERTAIIGHSLGGLFVLFALLTYPDCFGRYGLISPSL 172 (264)
T ss_pred CcccceeeeecchhHHHHHHHhcCcchhceeeeecchh
Confidence 45668999999999999999999999999999999863
No 204
>PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function.
Probab=97.27 E-value=0.00055 Score=48.49 Aligned_cols=63 Identities=16% Similarity=0.074 Sum_probs=43.2
Q ss_pred CeEEEEcCCCCCCCCcc-----c---ccccchhhchHHHHHHHHHhcCCCcEEEEEeCcchHHHHHHHhhC
Q 024134 44 HRVTAMDLAASGINMKK-----I---QDVRSFYEYNEPLLEILASLSADEKVILVGHSFGGLSVALAADKF 106 (272)
Q Consensus 44 ~~v~~~d~~G~G~s~~~-----~---~~~~~~~~~~~~~~~~i~~l~~~~~~~lvG~S~Gg~~a~~~a~~~ 106 (272)
.+|++|=+|=....... . .......|..+....+|++.++.++++|+|||.|+.+..++..++
T Consensus 46 ~~vfAP~YRQatl~~~~~~~~~~~~~a~~~ay~DV~~AF~~yL~~~n~GRPfILaGHSQGs~~l~~LL~e~ 116 (207)
T PF11288_consen 46 CNVFAPRYRQATLYAFLDTDREDAEKAFDLAYSDVRAAFDYYLANYNNGRPFILAGHSQGSMHLLRLLKEE 116 (207)
T ss_pred CccccChhhcchhhhhhccCcchhHHHHHhhHHHHHHHHHHHHHhcCCCCCEEEEEeChHHHHHHHHHHHH
Confidence 57888877643221111 0 012345666667777777776678999999999999999998764
No 205
>PF01083 Cutinase: Cutinase; InterPro: IPR000675 Aerial plant organs are protected by a cuticle composed of an insoluble polymeric structural compound, cutin, which is a polyester composed of hydroxy and hydroxyepoxy fatty acids []. Plant pathogenic fungi produce extracellular degradative enzymes [] that play an important role in pathogenesis. They include cutinase, which hydrolyses cutin, facilitating fungus penetration through the cuticle. Inhibition of the enzyme can prevent fungal infection through intact cuticles. Cutin monomers released from the cuticle by small amounts of cutinase on fungal spore surfaces can greatly increase the amount of cutinase secreted by the spore, the mechanism for which process is as yet unknown [, ]. Cutinase is a serine esterase containing the classical Ser, His, Asp triad of serine hydrolases []. The protein belongs to the alpha-beta class, with a central beta-sheet of 5 parallel strands covered by 5 helices on either side of the sheet. The active site cleft is partly covered by 2 thin bridges formed by amino acid side chains, by contrast with the hydrophobic lid possessed by other lipases []. The protein also contains 2 disulphide bridges, which are essential for activity, their cleavage resulting in complete loss of enzymatic activity []. Two cutinase-like proteins (MtCY39.35 and MtCY339.08c) have been found in the genome of the bacteria Mycobacterium tuberculosis.; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 1XZK_A 1XZA_A 1CUD_C 1XZI_A 1XZH_A 1CUF_A 1FFD_A 2CUT_A 1FFA_A 1CUA_A ....
Probab=97.22 E-value=0.0016 Score=45.66 Aligned_cols=101 Identities=18% Similarity=0.187 Sum_probs=53.6
Q ss_pred eEEEEecCCCcchh---HHhhHHHHHh-CC---CeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHh---cCCCcE
Q 024134 18 HFVLVHGSNHGAWC---WYKVKPRLEA-AG---HRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASL---SADEKV 87 (272)
Q Consensus 18 ~vv~lhG~~~~~~~---~~~~~~~l~~-~g---~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l---~~~~~~ 87 (272)
.||+..|.+..... -..+...|.. .| ..+..+++|--.... ....+..+-+.++...++.. ....++
T Consensus 7 ~vi~aRGT~E~~g~~~~g~~~~~~l~~~~g~~~~~~~~V~YpA~~~~~---~y~~S~~~G~~~~~~~i~~~~~~CP~~ki 83 (179)
T PF01083_consen 7 HVIFARGTGEPPGVGRVGPPFADALQAQPGGTSVAVQGVEYPASLGPN---SYGDSVAAGVANLVRLIEEYAARCPNTKI 83 (179)
T ss_dssp EEEEE--TTSSTTTCCCHHHHHHHHHHHCTTCEEEEEE--S---SCGG---SCHHHHHHHHHHHHHHHHHHHHHSTTSEE
T ss_pred EEEEecCCCCCCCCccccHHHHHHHHhhcCCCeeEEEecCCCCCCCcc---cccccHHHHHHHHHHHHHHHHHhCCCCCE
Confidence 46667776654432 1223334432 12 445556666432221 11123334444444444433 267899
Q ss_pred EEEEeCcchHHHHHHHhh------CccceeeeeeeeccCC
Q 024134 88 ILVGHSFGGLSVALAADK------FPHKISVAIFLTAFMP 121 (272)
Q Consensus 88 ~lvG~S~Gg~~a~~~a~~------~p~~v~~lvl~~~~~~ 121 (272)
+|+|+|.|+.++..++.. ..++|.++++++-+..
T Consensus 84 vl~GYSQGA~V~~~~~~~~~l~~~~~~~I~avvlfGdP~~ 123 (179)
T PF01083_consen 84 VLAGYSQGAMVVGDALSGDGLPPDVADRIAAVVLFGDPRR 123 (179)
T ss_dssp EEEEETHHHHHHHHHHHHTTSSHHHHHHEEEEEEES-TTT
T ss_pred EEEecccccHHHHHHHHhccCChhhhhhEEEEEEecCCcc
Confidence 999999999999999877 2367999999886543
No 206
>cd00519 Lipase_3 Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=97.20 E-value=0.00063 Score=49.98 Aligned_cols=24 Identities=42% Similarity=0.639 Sum_probs=20.7
Q ss_pred CCCcEEEEEeCcchHHHHHHHhhC
Q 024134 83 ADEKVILVGHSFGGLSVALAADKF 106 (272)
Q Consensus 83 ~~~~~~lvG~S~Gg~~a~~~a~~~ 106 (272)
+..++++.|||+||.+|..++...
T Consensus 126 p~~~i~vtGHSLGGaiA~l~a~~l 149 (229)
T cd00519 126 PDYKIIVTGHSLGGALASLLALDL 149 (229)
T ss_pred CCceEEEEccCHHHHHHHHHHHHH
Confidence 567899999999999999888754
No 207
>COG2830 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.98 E-value=0.021 Score=38.31 Aligned_cols=79 Identities=14% Similarity=0.102 Sum_probs=53.2
Q ss_pred CCeEEEEecCCCcchhHHhhHHHHHhCCCe-EEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcCCCcEEEEEeCc
Q 024134 16 QKHFVLVHGSNHGAWCWYKVKPRLEAAGHR-VTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSADEKVILVGHSF 94 (272)
Q Consensus 16 ~~~vv~lhG~~~~~~~~~~~~~~l~~~g~~-v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~lvG~S~ 94 (272)
...||+.-|++..+....++.- ..++. ++++|+...... .++. .-+.+.+|++||
T Consensus 11 d~LIvyFaGwgtpps~v~HLil---peN~dl~lcYDY~dl~ld-------fDfs--------------Ay~hirlvAwSM 66 (214)
T COG2830 11 DHLIVYFAGWGTPPSAVNHLIL---PENHDLLLCYDYQDLNLD-------FDFS--------------AYRHIRLVAWSM 66 (214)
T ss_pred CEEEEEEecCCCCHHHHhhccC---CCCCcEEEEeehhhcCcc-------cchh--------------hhhhhhhhhhhH
Confidence 3488999999999888766542 33454 677887633221 1211 225667899999
Q ss_pred chHHHHHHHhhCccceeeeeeeeccC
Q 024134 95 GGLSVALAADKFPHKISVAIFLTAFM 120 (272)
Q Consensus 95 Gg~~a~~~a~~~p~~v~~lvl~~~~~ 120 (272)
|-++|-.+....+ +++.+.+++..
T Consensus 67 GVwvAeR~lqg~~--lksatAiNGTg 90 (214)
T COG2830 67 GVWVAERVLQGIR--LKSATAINGTG 90 (214)
T ss_pred HHHHHHHHHhhcc--ccceeeecCCC
Confidence 9999999987764 66777777653
No 208
>KOG1516 consensus Carboxylesterase and related proteins [General function prediction only]
Probab=96.94 E-value=0.0035 Score=52.57 Aligned_cols=105 Identities=16% Similarity=0.092 Sum_probs=60.1
Q ss_pred CCeEEEEecCCCcc---hhH--HhhHHHHHhCCCeEEEEcCC----CCCCCCcc-cccccchhhchHHHHHHHHHh----
Q 024134 16 QKHFVLVHGSNHGA---WCW--YKVKPRLEAAGHRVTAMDLA----ASGINMKK-IQDVRSFYEYNEPLLEILASL---- 81 (272)
Q Consensus 16 ~~~vv~lhG~~~~~---~~~--~~~~~~l~~~g~~v~~~d~~----G~G~s~~~-~~~~~~~~~~~~~~~~~i~~l---- 81 (272)
-|++|++||.+... ..+ ......+..+..-|+++.+| |+...... ....+.+.|++..+.-+-+.+
T Consensus 112 ~pV~V~iHGG~~~~gs~~~~~~~~~~~~~~~~~VVvVt~~YRLG~lGF~st~d~~~~gN~gl~Dq~~AL~wv~~~I~~FG 191 (545)
T KOG1516|consen 112 LPVMVYIHGGGFQFGSASSFEIISPAYVLLLKDVVVVTINYRLGPLGFLSTGDSAAPGNLGLFDQLLALRWVKDNIPSFG 191 (545)
T ss_pred CCEEEEEeCCceeeccccchhhcCchhccccCCEEEEEecccceeceeeecCCCCCCCcccHHHHHHHHHHHHHHHHhcC
Confidence 68999999986322 222 12222233344667777766 32222111 112345555555544444444
Q ss_pred cCCCcEEEEEeCcchHHHHHHHhh--CccceeeeeeeeccC
Q 024134 82 SADEKVILVGHSFGGLSVALAADK--FPHKISVAIFLTAFM 120 (272)
Q Consensus 82 ~~~~~~~lvG~S~Gg~~a~~~a~~--~p~~v~~lvl~~~~~ 120 (272)
++.++|.++|||.||..+..+... ....+.+.|.+++..
T Consensus 192 Gdp~~vTl~G~saGa~~v~~l~~Sp~s~~LF~~aI~~SG~~ 232 (545)
T KOG1516|consen 192 GDPKNVTLFGHSAGAASVSLLTLSPHSRGLFHKAISMSGNA 232 (545)
T ss_pred CCCCeEEEEeechhHHHHHHHhcCHhhHHHHHHHHhhcccc
Confidence 466889999999999988777632 124566777766653
No 209
>PLN02162 triacylglycerol lipase
Probab=96.92 E-value=0.0022 Score=51.00 Aligned_cols=34 Identities=38% Similarity=0.437 Sum_probs=25.3
Q ss_pred chHHHHHHHHHhcCCCcEEEEEeCcchHHHHHHHh
Q 024134 70 YNEPLLEILASLSADEKVILVGHSFGGLSVALAAD 104 (272)
Q Consensus 70 ~~~~~~~~i~~l~~~~~~~lvG~S~Gg~~a~~~a~ 104 (272)
+.+.+.+++... +..++++.|||+||.+|..+|.
T Consensus 264 I~~~L~~lL~k~-p~~kliVTGHSLGGALAtLaAa 297 (475)
T PLN02162 264 IRQMLRDKLARN-KNLKYILTGHSLGGALAALFPA 297 (475)
T ss_pred HHHHHHHHHHhC-CCceEEEEecChHHHHHHHHHH
Confidence 344455555555 5678999999999999988764
No 210
>COG2939 Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism]
Probab=96.87 E-value=0.0057 Score=48.98 Aligned_cols=109 Identities=11% Similarity=0.123 Sum_probs=71.3
Q ss_pred CCCeEEEEecCCCcchhHHhhHHH-------------------HHhCCCeEEEEc-CCCCCCCCc-ccccccchhhchHH
Q 024134 15 KQKHFVLVHGSNHGAWCWYKVKPR-------------------LEAAGHRVTAMD-LAASGINMK-KIQDVRSFYEYNEP 73 (272)
Q Consensus 15 ~~~~vv~lhG~~~~~~~~~~~~~~-------------------l~~~g~~v~~~d-~~G~G~s~~-~~~~~~~~~~~~~~ 73 (272)
++|.++++.|.++.+..|-.+.+. +... -.++.+| .-|-|.|.. ......+.....+|
T Consensus 100 ~rPvi~wlNGGPGcSS~~g~l~elGP~rI~~~~~P~~~~NP~SW~~~-adLvFiDqPvGTGfS~a~~~e~~~d~~~~~~D 178 (498)
T COG2939 100 NRPVIFWLNGGPGCSSVTGLLGELGPKRIQSGTSPSYPDNPGSWLDF-ADLVFIDQPVGTGFSRALGDEKKKDFEGAGKD 178 (498)
T ss_pred CCceEEEecCCCChHhhhhhhhhcCCeeeeCCCCCCCCCCccccccC-CceEEEecCcccCcccccccccccchhccchh
Confidence 578999999999999887544210 1111 3688999 558888864 22223455566666
Q ss_pred HHHHHHHh--------cCCCcEEEEEeCcchHHHHHHHhhCcc---ceeeeeeeeccCCCCC
Q 024134 74 LLEILASL--------SADEKVILVGHSFGGLSVALAADKFPH---KISVAIFLTAFMPDTK 124 (272)
Q Consensus 74 ~~~~i~~l--------~~~~~~~lvG~S~Gg~~a~~~a~~~p~---~v~~lvl~~~~~~~~~ 124 (272)
+..+.+.. ....+.+|+|-|+||.-+-.+|...-+ ..+++|++.+.....+
T Consensus 179 ~~~~~~~f~~~fp~~~r~~~~~~L~GESYgg~yip~~A~~L~~~~~~~~~~~nlssvligng 240 (498)
T COG2939 179 VYSFLRLFFDKFPHYARLLSPKFLAGESYGGHYIPVFAHELLEDNIALNGNVNLSSVLIGNG 240 (498)
T ss_pred HHHHHHHHHHHHHHHhhhcCceeEeeccccchhhHHHHHHHHHhccccCCceEeeeeeecCC
Confidence 65555543 234589999999999988777765444 3677777776554333
No 211
>COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]
Probab=96.86 E-value=0.0038 Score=46.55 Aligned_cols=53 Identities=19% Similarity=0.286 Sum_probs=38.9
Q ss_pred hhchHHHHHHHHHh----cCCCcEEEEEeCcchHHHHHHHhhCccceeeeeeeeccC
Q 024134 68 YEYNEPLLEILASL----SADEKVILVGHSFGGLSVALAADKFPHKISVAIFLTAFM 120 (272)
Q Consensus 68 ~~~~~~~~~~i~~l----~~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~ 120 (272)
..+++++.=.++.. .....-+|.|-|+||.+++..+..+|+++..++..+|..
T Consensus 156 ~~L~~eLlP~v~~~yp~~~~a~~r~L~G~SlGG~vsL~agl~~Pe~FG~V~s~Sps~ 212 (299)
T COG2382 156 RFLAQELLPYVEERYPTSADADGRVLAGDSLGGLVSLYAGLRHPERFGHVLSQSGSF 212 (299)
T ss_pred HHHHHHhhhhhhccCcccccCCCcEEeccccccHHHHHHHhcCchhhceeeccCCcc
Confidence 33344444444433 123456899999999999999999999999999888764
No 212
>PLN00413 triacylglycerol lipase
Probab=96.83 E-value=0.0029 Score=50.44 Aligned_cols=35 Identities=34% Similarity=0.408 Sum_probs=27.8
Q ss_pred hchHHHHHHHHHhcCCCcEEEEEeCcchHHHHHHHh
Q 024134 69 EYNEPLLEILASLSADEKVILVGHSFGGLSVALAAD 104 (272)
Q Consensus 69 ~~~~~~~~~i~~l~~~~~~~lvG~S~Gg~~a~~~a~ 104 (272)
+..+.+.++++.. +..++++.|||+||.+|..+|.
T Consensus 269 ~i~~~Lk~ll~~~-p~~kliVTGHSLGGALAtLaA~ 303 (479)
T PLN00413 269 TILRHLKEIFDQN-PTSKFILSGHSLGGALAILFTA 303 (479)
T ss_pred HHHHHHHHHHHHC-CCCeEEEEecCHHHHHHHHHHH
Confidence 3455666777666 6778999999999999998874
No 213
>PF05277 DUF726: Protein of unknown function (DUF726); InterPro: IPR007941 This family consists of several uncharacterised eukaryotic proteins.
Probab=96.78 E-value=0.003 Score=48.76 Aligned_cols=40 Identities=23% Similarity=0.443 Sum_probs=32.2
Q ss_pred CCCcEEEEEeCcchHHHHHHHhhCccc-----eeeeeeeeccCCC
Q 024134 83 ADEKVILVGHSFGGLSVALAADKFPHK-----ISVAIFLTAFMPD 122 (272)
Q Consensus 83 ~~~~~~lvG~S~Gg~~a~~~a~~~p~~-----v~~lvl~~~~~~~ 122 (272)
+.+|+.|||||+|+.+.........++ |+.+++++++.+.
T Consensus 218 G~RpVtLvG~SLGarvI~~cL~~L~~~~~~~lVe~VvL~Gapv~~ 262 (345)
T PF05277_consen 218 GERPVTLVGHSLGARVIYYCLLELAERKAFGLVENVVLMGAPVPS 262 (345)
T ss_pred CCCceEEEeecccHHHHHHHHHHHHhccccCeEeeEEEecCCCCC
Confidence 667899999999999988877655443 8999999887554
No 214
>PLN02571 triacylglycerol lipase
Probab=96.63 E-value=0.0029 Score=49.83 Aligned_cols=37 Identities=19% Similarity=0.269 Sum_probs=27.1
Q ss_pred hhchHHHHHHHHHhcCC--CcEEEEEeCcchHHHHHHHhh
Q 024134 68 YEYNEPLLEILASLSAD--EKVILVGHSFGGLSVALAADK 105 (272)
Q Consensus 68 ~~~~~~~~~~i~~l~~~--~~~~lvG~S~Gg~~a~~~a~~ 105 (272)
+++.+++..+++.. .. .++++.|||+||.+|...|..
T Consensus 208 ~qvl~eV~~L~~~y-~~e~~sI~VTGHSLGGALAtLaA~d 246 (413)
T PLN02571 208 DQVLNEVGRLVEKY-KDEEISITICGHSLGAALATLNAVD 246 (413)
T ss_pred HHHHHHHHHHHHhc-CcccccEEEeccchHHHHHHHHHHH
Confidence 34555666666655 33 368999999999999998864
No 215
>PLN02454 triacylglycerol lipase
Probab=96.63 E-value=0.003 Score=49.72 Aligned_cols=20 Identities=40% Similarity=0.592 Sum_probs=17.8
Q ss_pred cEEEEEeCcchHHHHHHHhh
Q 024134 86 KVILVGHSFGGLSVALAADK 105 (272)
Q Consensus 86 ~~~lvG~S~Gg~~a~~~a~~ 105 (272)
++++.|||+||.+|+.+|..
T Consensus 229 sI~vTGHSLGGALAtLaA~d 248 (414)
T PLN02454 229 SIVLTGHSLGASLATLAAFD 248 (414)
T ss_pred eEEEEecCHHHHHHHHHHHH
Confidence 49999999999999999854
No 216
>PLN02408 phospholipase A1
Probab=96.40 E-value=0.0048 Score=47.89 Aligned_cols=35 Identities=29% Similarity=0.455 Sum_probs=25.2
Q ss_pred hHHHHHHHHHhcCC--CcEEEEEeCcchHHHHHHHhhC
Q 024134 71 NEPLLEILASLSAD--EKVILVGHSFGGLSVALAADKF 106 (272)
Q Consensus 71 ~~~~~~~i~~l~~~--~~~~lvG~S~Gg~~a~~~a~~~ 106 (272)
.+.+..+++.. +. .++++.|||+||.+|..+|...
T Consensus 185 l~eI~~ll~~y-~~~~~sI~vTGHSLGGALAtLaA~dl 221 (365)
T PLN02408 185 REEIARLLQSY-GDEPLSLTITGHSLGAALATLTAYDI 221 (365)
T ss_pred HHHHHHHHHhc-CCCCceEEEeccchHHHHHHHHHHHH
Confidence 44555555555 33 3589999999999999988653
No 217
>KOG4372 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=96.35 E-value=0.0082 Score=46.72 Aligned_cols=87 Identities=24% Similarity=0.268 Sum_probs=49.7
Q ss_pred CCCeEEEEecCCC-cchhHHhhHHHHHhCCCeEEEEcCCCCCCCC-cccccc-cchhhchHHHHHHHHHhcCCCcEEEEE
Q 024134 15 KQKHFVLVHGSNH-GAWCWYKVKPRLEAAGHRVTAMDLAASGINM-KKIQDV-RSFYEYNEPLLEILASLSADEKVILVG 91 (272)
Q Consensus 15 ~~~~vv~lhG~~~-~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~-~~~~~~-~~~~~~~~~~~~~i~~l~~~~~~~lvG 91 (272)
.+-.+|+.||+.+ +...|...+....++ +.=..+..+|+-... ...... .=-+..++++.+.+... ..+++..+|
T Consensus 79 ~~HLvVlthGi~~~~~~~~~~~~~~~~kk-~p~~~iv~~g~~~~~~~T~~Gv~~lG~Rla~~~~e~~~~~-si~kISfvg 156 (405)
T KOG4372|consen 79 PKHLVVLTHGLHGADMEYWKEKIEQMTKK-MPDKLIVVRGKMNNMCQTFDGVDVLGERLAEEVKETLYDY-SIEKISFVG 156 (405)
T ss_pred CceEEEeccccccccHHHHHHHHHhhhcC-CCcceEeeeccccchhhccccceeeecccHHHHhhhhhcc-ccceeeeee
Confidence 3457999999987 556677777666654 222233333332221 111110 11123344445555444 568999999
Q ss_pred eCcchHHHHHHH
Q 024134 92 HSFGGLSVALAA 103 (272)
Q Consensus 92 ~S~Gg~~a~~~a 103 (272)
||+||.++..+.
T Consensus 157 hSLGGLvar~AI 168 (405)
T KOG4372|consen 157 HSLGGLVARYAI 168 (405)
T ss_pred eecCCeeeeEEE
Confidence 999999765554
No 218
>PLN02934 triacylglycerol lipase
Probab=96.30 E-value=0.0062 Score=49.07 Aligned_cols=35 Identities=26% Similarity=0.416 Sum_probs=27.3
Q ss_pred hchHHHHHHHHHhcCCCcEEEEEeCcchHHHHHHHh
Q 024134 69 EYNEPLLEILASLSADEKVILVGHSFGGLSVALAAD 104 (272)
Q Consensus 69 ~~~~~~~~~i~~l~~~~~~~lvG~S~Gg~~a~~~a~ 104 (272)
+....+.++++.. +..++++.|||+||.+|..+|.
T Consensus 306 ~v~~~lk~ll~~~-p~~kIvVTGHSLGGALAtLaA~ 340 (515)
T PLN02934 306 AVRSKLKSLLKEH-KNAKFVVTGHSLGGALAILFPT 340 (515)
T ss_pred HHHHHHHHHHHHC-CCCeEEEeccccHHHHHHHHHH
Confidence 3455566666665 6789999999999999998874
No 219
>PLN02310 triacylglycerol lipase
Probab=96.10 E-value=0.015 Score=45.86 Aligned_cols=36 Identities=19% Similarity=0.310 Sum_probs=24.9
Q ss_pred chHHHHHHHHHhc---CCCcEEEEEeCcchHHHHHHHhh
Q 024134 70 YNEPLLEILASLS---ADEKVILVGHSFGGLSVALAADK 105 (272)
Q Consensus 70 ~~~~~~~~i~~l~---~~~~~~lvG~S~Gg~~a~~~a~~ 105 (272)
+.+.+.++++... ...++++.|||+||.+|+..|..
T Consensus 191 Vl~eV~~L~~~y~~~~e~~sI~vTGHSLGGALAtLaA~d 229 (405)
T PLN02310 191 VMQEVKRLVNFYRGKGEEVSLTVTGHSLGGALALLNAYE 229 (405)
T ss_pred HHHHHHHHHHhhcccCCcceEEEEcccHHHHHHHHHHHH
Confidence 3445555555441 23479999999999999988854
No 220
>PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ]. It also includes several bacterial homologues of unknown function.
Probab=96.08 E-value=0.042 Score=45.04 Aligned_cols=84 Identities=15% Similarity=0.147 Sum_probs=56.5
Q ss_pred hHHHHHhCCCeEEEEcCCCCCCCCc--ccccccc-----------hhhchHHHHHHHHHh--cCCCcEEEEEeCcchHHH
Q 024134 35 VKPRLEAAGHRVTAMDLAASGINMK--KIQDVRS-----------FYEYNEPLLEILASL--SADEKVILVGHSFGGLSV 99 (272)
Q Consensus 35 ~~~~l~~~g~~v~~~d~~G~G~s~~--~~~~~~~-----------~~~~~~~~~~~i~~l--~~~~~~~lvG~S~Gg~~a 99 (272)
+...+ .+||.++.-|- ||..+.. ......+ +.+.+..-.++++.. ...+.-+..|.|-||.-+
T Consensus 52 ~~~~~-~~G~A~~~TD~-Gh~~~~~~~~~~~~~n~~~~~dfa~ra~h~~~~~aK~l~~~~Yg~~p~~sY~~GcS~GGRqg 129 (474)
T PF07519_consen 52 MATAL-ARGYATASTDS-GHQGSAGSDDASFGNNPEALLDFAYRALHETTVVAKALIEAFYGKAPKYSYFSGCSTGGRQG 129 (474)
T ss_pred cchhh-hcCeEEEEecC-CCCCCcccccccccCCHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCceEEEEeCCCcchH
Confidence 34455 48999999995 7766543 1110011 222222233444444 355678999999999999
Q ss_pred HHHHhhCccceeeeeeeeccC
Q 024134 100 ALAADKFPHKISVAIFLTAFM 120 (272)
Q Consensus 100 ~~~a~~~p~~v~~lvl~~~~~ 120 (272)
+..|++||+.++++|.-+|..
T Consensus 130 l~~AQryP~dfDGIlAgaPA~ 150 (474)
T PF07519_consen 130 LMAAQRYPEDFDGILAGAPAI 150 (474)
T ss_pred HHHHHhChhhcCeEEeCCchH
Confidence 999999999999999888864
No 221
>PF06850 PHB_depo_C: PHB de-polymerase C-terminus; InterPro: IPR009656 This entry represents the C terminus of bacterial poly(3-hydroxybutyrate) (PHB) de-polymerase. This degrades PHB granules to oligomers and monomers of 3-hydroxy-butyric acid.
Probab=96.05 E-value=0.015 Score=40.56 Aligned_cols=61 Identities=8% Similarity=0.083 Sum_probs=46.4
Q ss_pred CceeEEEEeCCCCCccHHHHH---HHHhcCCC--ceEEEecCCCcccccCCC---chHHHHHHHHHHhh
Q 024134 211 SVKRDFVGSDKDNCIPKEFQQ---WMIQNNPV--NEVMAIKGADHMAMLSKP---QPLSDCFSQIAHKY 271 (272)
Q Consensus 211 ~~P~l~i~g~~D~~~~~~~~~---~~~~~~~~--~~~~~~~~~gH~~~~~~p---~~~~~~i~~fl~~~ 271 (272)
+++++-|-|+.|.++.+.... .+...+|. ...++.+|+||+..+.-+ +++.-.|.+|+.++
T Consensus 134 ~taLlTVEGe~DDIsg~GQT~AA~~LC~glp~~~k~~~~~~g~GHYGlF~G~rwr~~I~P~i~~fi~~~ 202 (202)
T PF06850_consen 134 RTALLTVEGERDDISGPGQTHAAHDLCTGLPADMKRHHLQPGVGHYGLFNGSRWREEIYPRIREFIRQH 202 (202)
T ss_pred cceeEEeecCcccCCcchHHHHHHHHhcCCCHHHhhhcccCCCCeeecccchhhhhhhhHHHHHHHHhC
Confidence 678888999999999876544 44445553 367788899999887655 67888899998764
No 222
>PLN02324 triacylglycerol lipase
Probab=96.05 E-value=0.0089 Score=47.12 Aligned_cols=35 Identities=23% Similarity=0.400 Sum_probs=24.8
Q ss_pred hHHHHHHHHHhcC-CCcEEEEEeCcchHHHHHHHhh
Q 024134 71 NEPLLEILASLSA-DEKVILVGHSFGGLSVALAADK 105 (272)
Q Consensus 71 ~~~~~~~i~~l~~-~~~~~lvG~S~Gg~~a~~~a~~ 105 (272)
.+.|..+++...+ ..++++.|||+||.+|...|..
T Consensus 200 l~eV~~L~~~Yp~e~~sItvTGHSLGGALAtLaA~d 235 (415)
T PLN02324 200 QGELKRLLELYKNEEISITFTGHSLGAVMSVLSAAD 235 (415)
T ss_pred HHHHHHHHHHCCCCCceEEEecCcHHHHHHHHHHHH
Confidence 4445556655521 2369999999999999998854
No 223
>COG4287 PqaA PhoPQ-activated pathogenicity-related protein [General function prediction only]
Probab=95.81 E-value=0.024 Score=43.62 Aligned_cols=58 Identities=9% Similarity=0.204 Sum_probs=45.9
Q ss_pred CceeEEEEeCCCCCccHHHHHHHHhcCCCc-eEEEecCCCcccccCCCchHHHHHHHHHHhh
Q 024134 211 SVKRDFVGSDKDNCIPKEFQQWMIQNNPVN-EVMAIKGADHMAMLSKPQPLSDCFSQIAHKY 271 (272)
Q Consensus 211 ~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~-~~~~~~~~gH~~~~~~p~~~~~~i~~fl~~~ 271 (272)
..|..++.+..|.+.+++.+....+.+|+. -+..+|+..|.... ..+.+.+..|++++
T Consensus 329 alpKyivnaSgDdff~pDsa~lYyd~LPG~kaLrmvPN~~H~~~n---~~i~esl~~flnrf 387 (507)
T COG4287 329 ALPKYIVNASGDDFFVPDSANLYYDDLPGEKALRMVPNDPHNLIN---QFIKESLEPFLNRF 387 (507)
T ss_pred cccceeecccCCcccCCCccceeeccCCCceeeeeCCCCcchhhH---HHHHHHHHHHHHHH
Confidence 789999999999999999888888999975 56888999998643 34556666666655
No 224
>PLN02802 triacylglycerol lipase
Probab=95.79 E-value=0.013 Score=47.32 Aligned_cols=37 Identities=19% Similarity=0.361 Sum_probs=25.2
Q ss_pred chHHHHHHHHHhcC-CCcEEEEEeCcchHHHHHHHhhC
Q 024134 70 YNEPLLEILASLSA-DEKVILVGHSFGGLSVALAADKF 106 (272)
Q Consensus 70 ~~~~~~~~i~~l~~-~~~~~lvG~S~Gg~~a~~~a~~~ 106 (272)
+.+++..+++...+ ..++++.|||+||.+|..+|...
T Consensus 314 Vl~eV~~Ll~~Y~~e~~sI~VTGHSLGGALAtLaA~dL 351 (509)
T PLN02802 314 VVGEVRRLMEKYKGEELSITVTGHSLGAALALLVADEL 351 (509)
T ss_pred HHHHHHHHHHhCCCCcceEEEeccchHHHHHHHHHHHH
Confidence 34445555554422 23689999999999999887653
No 225
>PLN03037 lipase class 3 family protein; Provisional
Probab=95.79 E-value=0.013 Score=47.49 Aligned_cols=36 Identities=22% Similarity=0.358 Sum_probs=25.9
Q ss_pred chHHHHHHHHHhc---CCCcEEEEEeCcchHHHHHHHhh
Q 024134 70 YNEPLLEILASLS---ADEKVILVGHSFGGLSVALAADK 105 (272)
Q Consensus 70 ~~~~~~~~i~~l~---~~~~~~lvG~S~Gg~~a~~~a~~ 105 (272)
..+++..+++... ...++++.|||+||.+|+..|..
T Consensus 300 Vl~eV~rLv~~Yk~~ge~~SItVTGHSLGGALAtLaA~D 338 (525)
T PLN03037 300 VMEEVKRLVNFFKDRGEEVSLTITGHSLGGALALLNAYE 338 (525)
T ss_pred HHHHHHHHHHhccccCCcceEEEeccCHHHHHHHHHHHH
Confidence 4455666666552 23469999999999999988854
No 226
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=95.68 E-value=0.0098 Score=33.44 Aligned_cols=19 Identities=32% Similarity=0.468 Sum_probs=11.7
Q ss_pred cCCCeEEEEecCCCcchhH
Q 024134 14 KKQKHFVLVHGSNHGAWCW 32 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~~ 32 (272)
..+|+|++.||+.+++..|
T Consensus 41 ~~k~pVll~HGL~~ss~~w 59 (63)
T PF04083_consen 41 KKKPPVLLQHGLLQSSDDW 59 (63)
T ss_dssp TT--EEEEE--TT--GGGG
T ss_pred CCCCcEEEECCcccChHHH
Confidence 5688999999999999988
No 227
>PLN02753 triacylglycerol lipase
Probab=95.61 E-value=0.016 Score=47.00 Aligned_cols=35 Identities=23% Similarity=0.367 Sum_probs=24.6
Q ss_pred hHHHHHHHHHhc----CCCcEEEEEeCcchHHHHHHHhh
Q 024134 71 NEPLLEILASLS----ADEKVILVGHSFGGLSVALAADK 105 (272)
Q Consensus 71 ~~~~~~~i~~l~----~~~~~~lvG~S~Gg~~a~~~a~~ 105 (272)
.+.+..+++... ...++++.|||+||.+|...|..
T Consensus 294 l~eVkrLl~~Y~~e~~~~~sItVTGHSLGGALAtLaA~D 332 (531)
T PLN02753 294 LTEVKRLVEEHGDDDDSDLSITVTGHSLGGALAILSAYD 332 (531)
T ss_pred HHHHHHHHHHcccccCCCceEEEEccCHHHHHHHHHHHH
Confidence 344455555441 13589999999999999998853
No 228
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=95.61 E-value=0.29 Score=30.55 Aligned_cols=84 Identities=19% Similarity=0.202 Sum_probs=56.4
Q ss_pred hHHhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcCCCcEEEEEeCcch--HHHHHHHhhCcc
Q 024134 31 CWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSADEKVILVGHSFGG--LSVALAADKFPH 108 (272)
Q Consensus 31 ~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~lvG~S~Gg--~~a~~~a~~~p~ 108 (272)
.|..+.+.+...|+..=.+.++..|.+....-.....+.=...+..+++.. ...++++||-|--. -+-..+|.++|+
T Consensus 12 ly~~l~~Fl~~~~~P~G~~~Lr~~~~~~~~~~~~~~~~~K~~~i~~i~~~f-P~~kfiLIGDsgq~DpeiY~~ia~~~P~ 90 (100)
T PF09949_consen 12 LYPFLRDFLRRNGFPAGPLLLRDYGPSLSGLFKSGAEEHKRDNIERILRDF-PERKFILIGDSGQHDPEIYAEIARRFPG 90 (100)
T ss_pred HHHHHHHHHHhcCCCCCceEcccCCccccccccCCchhHHHHHHHHHHHHC-CCCcEEEEeeCCCcCHHHHHHHHHHCCC
Confidence 355666777677787777888877655332211011123355677888888 88999999988554 355667889999
Q ss_pred ceeeeee
Q 024134 109 KISVAIF 115 (272)
Q Consensus 109 ~v~~lvl 115 (272)
+|.++..
T Consensus 91 ~i~ai~I 97 (100)
T PF09949_consen 91 RILAIYI 97 (100)
T ss_pred CEEEEEE
Confidence 9988753
No 229
>PF05576 Peptidase_S37: PS-10 peptidase S37; InterPro: IPR008761 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. These group of serine peptidases belong to MEROPS peptidase family S37 (clan SC). The members of this group of secreted peptidases are restricted to bacteria. In Streptomyces lividans the peptidase removes tripeptides from the N terminus of extracellular proteins (tripeptidyl aminopeptidase,Tap) [, ].
Probab=95.48 E-value=0.022 Score=44.68 Aligned_cols=103 Identities=14% Similarity=0.112 Sum_probs=77.7
Q ss_pred cCCCeEEEEecCCCcchhHH-hhHHHHHhCCCeEEEEcCCCCCCCCccccc--ccchhhchHHHHHHHHHhc--CCCcEE
Q 024134 14 KKQKHFVLVHGSNHGAWCWY-KVKPRLEAAGHRVTAMDLAASGINMKKIQD--VRSFYEYNEPLLEILASLS--ADEKVI 88 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~~~-~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~--~~~~~~~~~~~~~~i~~l~--~~~~~~ 88 (272)
..+|+|+..-|.+.+..-.+ .....| . -+-+.+++|-+|.|.+.+.+ ..++.+-++|...+++.+. -.++.+
T Consensus 61 ~drPtV~~T~GY~~~~~p~r~Ept~Ll--d-~NQl~vEhRfF~~SrP~p~DW~~Lti~QAA~D~Hri~~A~K~iY~~kWI 137 (448)
T PF05576_consen 61 FDRPTVLYTEGYNVSTSPRRSEPTQLL--D-GNQLSVEHRFFGPSRPEPADWSYLTIWQAASDQHRIVQAFKPIYPGKWI 137 (448)
T ss_pred CCCCeEEEecCcccccCccccchhHhh--c-cceEEEEEeeccCCCCCCCCcccccHhHhhHHHHHHHHHHHhhccCCce
Confidence 46789999999987654333 333333 2 57899999999999776542 3578888999888887772 246788
Q ss_pred EEEeCcchHHHHHHHhhCccceeeeeeeecc
Q 024134 89 LVGHSFGGLSVALAADKFPHKISVAIFLTAF 119 (272)
Q Consensus 89 lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~ 119 (272)
--|-|-||+.++.+=.-||+.|++.|.-.++
T Consensus 138 STG~SKGGmTa~y~rrFyP~DVD~tVaYVAP 168 (448)
T PF05576_consen 138 STGGSKGGMTAVYYRRFYPDDVDGTVAYVAP 168 (448)
T ss_pred ecCcCCCceeEEEEeeeCCCCCCeeeeeecc
Confidence 8899999999999988899999988855444
No 230
>PLN02719 triacylglycerol lipase
Probab=95.46 E-value=0.019 Score=46.44 Aligned_cols=21 Identities=33% Similarity=0.536 Sum_probs=18.3
Q ss_pred CcEEEEEeCcchHHHHHHHhh
Q 024134 85 EKVILVGHSFGGLSVALAADK 105 (272)
Q Consensus 85 ~~~~lvG~S~Gg~~a~~~a~~ 105 (272)
.++++.|||+||.+|..+|..
T Consensus 298 ~sItVTGHSLGGALAtLaA~D 318 (518)
T PLN02719 298 LSITVTGHSLGGALAVLSAYD 318 (518)
T ss_pred ceEEEecCcHHHHHHHHHHHH
Confidence 479999999999999998854
No 231
>COG4947 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.21 E-value=0.087 Score=35.99 Aligned_cols=104 Identities=14% Similarity=0.056 Sum_probs=60.1
Q ss_pred CCCeEEEEecCCCcchhHHhh--HHHHH---hCCCeEEEEcCCCCCCCCcccc---cccchhhchHHHHHHHHHhcCCCc
Q 024134 15 KQKHFVLVHGSNHGAWCWYKV--KPRLE---AAGHRVTAMDLAASGINMKKIQ---DVRSFYEYNEPLLEILASLSADEK 86 (272)
Q Consensus 15 ~~~~vv~lhG~~~~~~~~~~~--~~~l~---~~g~~v~~~d~~G~G~s~~~~~---~~~~~~~~~~~~~~~i~~l~~~~~ 86 (272)
.+.+||+.+-.++.-..|..+ +..|+ +.| .|-.+..-|-..-+--.. .....+....--.-++++. -...
T Consensus 25 aG~pVvvFpts~Grf~eyed~G~v~ala~fie~G-~vQlft~~gldsESf~a~h~~~adr~~rH~AyerYv~eEa-lpgs 102 (227)
T COG4947 25 AGIPVVVFPTSGGRFNEYEDFGMVDALASFIEEG-LVQLFTLSGLDSESFLATHKNAADRAERHRAYERYVIEEA-LPGS 102 (227)
T ss_pred CCCcEEEEecCCCcchhhhhcccHHHHHHHHhcC-cEEEEEecccchHhHhhhcCCHHHHHHHHHHHHHHHHHhh-cCCC
Confidence 345677777777666666542 23333 344 333333333322111010 0012222222233444444 3456
Q ss_pred EEEEEeCcchHHHHHHHhhCccceeeeeeeeccC
Q 024134 87 VILVGHSFGGLSVALAADKFPHKISVAIFLTAFM 120 (272)
Q Consensus 87 ~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~ 120 (272)
.++-|-||||..|..+..++|+.+.++|.+++..
T Consensus 103 ~~~sgcsmGayhA~nfvfrhP~lftkvialSGvY 136 (227)
T COG4947 103 TIVSGCSMGAYHAANFVFRHPHLFTKVIALSGVY 136 (227)
T ss_pred ccccccchhhhhhhhhheeChhHhhhheeeccee
Confidence 7788999999999999999999999999998864
No 232
>PLN02761 lipase class 3 family protein
Probab=95.21 E-value=0.027 Score=45.69 Aligned_cols=20 Identities=25% Similarity=0.381 Sum_probs=17.7
Q ss_pred CcEEEEEeCcchHHHHHHHh
Q 024134 85 EKVILVGHSFGGLSVALAAD 104 (272)
Q Consensus 85 ~~~~lvG~S~Gg~~a~~~a~ 104 (272)
.++++.|||+||.+|...|.
T Consensus 294 ~sItVTGHSLGGALAtLaA~ 313 (527)
T PLN02761 294 ISITVTGHSLGASLALVSAY 313 (527)
T ss_pred ceEEEeccchHHHHHHHHHH
Confidence 36999999999999998885
No 233
>PLN02847 triacylglycerol lipase
Probab=95.00 E-value=0.038 Score=45.63 Aligned_cols=23 Identities=43% Similarity=0.574 Sum_probs=19.8
Q ss_pred CCCcEEEEEeCcchHHHHHHHhh
Q 024134 83 ADEKVILVGHSFGGLSVALAADK 105 (272)
Q Consensus 83 ~~~~~~lvG~S~Gg~~a~~~a~~ 105 (272)
+.-+++++|||+||.+|..++..
T Consensus 249 PdYkLVITGHSLGGGVAALLAil 271 (633)
T PLN02847 249 PDFKIKIVGHSLGGGTAALLTYI 271 (633)
T ss_pred CCCeEEEeccChHHHHHHHHHHH
Confidence 56789999999999999888764
No 234
>KOG4569 consensus Predicted lipase [Lipid transport and metabolism]
Probab=94.81 E-value=0.041 Score=42.93 Aligned_cols=37 Identities=24% Similarity=0.370 Sum_probs=30.0
Q ss_pred hhchHHHHHHHHHhcCCCcEEEEEeCcchHHHHHHHhh
Q 024134 68 YEYNEPLLEILASLSADEKVILVGHSFGGLSVALAADK 105 (272)
Q Consensus 68 ~~~~~~~~~~i~~l~~~~~~~lvG~S~Gg~~a~~~a~~ 105 (272)
..+.+++..+++.. +.-++.+-|||+||.+|..+|..
T Consensus 155 ~~~~~~~~~L~~~~-~~~~i~vTGHSLGgAlA~laa~~ 191 (336)
T KOG4569|consen 155 SGLDAELRRLIELY-PNYSIWVTGHSLGGALASLAALD 191 (336)
T ss_pred HHHHHHHHHHHHhc-CCcEEEEecCChHHHHHHHHHHH
Confidence 45666777777777 77889999999999999888764
No 235
>PF08237 PE-PPE: PE-PPE domain; InterPro: IPR013228 The human pathogen Mycobacterium tuberculosis harbours a large number of genes that encode proteins whose N-termini contain the characteristic motifs Pro-Glu (PE) or Pro-Pro-Glu (PPE). A subgroup of the PE proteins contains polymorphic GC-rich sequences (PGRS), while a subgroup of the PPE proteins contains major polymorphic tandem repeats (MPTR). The function of most of these proteins remains unknown []. However, the PE_PGRS proteins from Mycobacterium marinum are secreted by components of the ESX-5 system that belongs to the recently defined type VII secretion systems []. It has also been reported that the PE_PGRS family of proteins contains multiple calcium-binding and glycine-rich sequence motifs GGXGXD/NXUX. This sequence repeat constitutes a calcium-binding parallel beta-roll or parallel beta-helix structure and is found in RTX toxins secreted by many Gram-negative bacteria []. This domain is found C-terminal to the PE (IPR000084 from INTERPRO) and PPE (IPR000030 from INTERPRO) domains. The secondary structure of this domain is predicted to be a mixture of alpha helices and beta strands [].
Probab=94.73 E-value=0.17 Score=37.00 Aligned_cols=64 Identities=22% Similarity=0.123 Sum_probs=40.8
Q ss_pred CCeEEEEcCCCCCCC--C-cccccccchhhchHHHHHHHHHh-cCCCcEEEEEeCcchHHHHHHHhhC
Q 024134 43 GHRVTAMDLAASGIN--M-KKIQDVRSFYEYNEPLLEILASL-SADEKVILVGHSFGGLSVALAADKF 106 (272)
Q Consensus 43 g~~v~~~d~~G~G~s--~-~~~~~~~~~~~~~~~~~~~i~~l-~~~~~~~lvG~S~Gg~~a~~~a~~~ 106 (272)
|+.+..+++|..=.. . ....-..+..+=++.+.+.++.. ...++++++|+|+|+.++...+.+.
T Consensus 2 ~~~~~~V~YPa~f~P~~g~~~~t~~~Sv~~G~~~L~~ai~~~~~~~~~vvV~GySQGA~Va~~~~~~l 69 (225)
T PF08237_consen 2 GYNVVAVDYPASFWPVTGIGSPTYDESVAEGVANLDAAIRAAIAAGGPVVVFGYSQGAVVASNVLRRL 69 (225)
T ss_pred CcceEEecCCchhcCcCCCCCCccchHHHHHHHHHHHHHHhhccCCCCEEEEEECHHHHHHHHHHHHH
Confidence 567777777761110 0 00111236666666777777663 2568899999999999998877653
No 236
>KOG2029 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.50 E-value=0.077 Score=43.66 Aligned_cols=38 Identities=29% Similarity=0.438 Sum_probs=26.6
Q ss_pred cCCCcEEEEEeCcchHHHHHHHhh-----Ccc------ceeeeeeeecc
Q 024134 82 SADEKVILVGHSFGGLSVALAADK-----FPH------KISVAIFLTAF 119 (272)
Q Consensus 82 ~~~~~~~lvG~S~Gg~~a~~~a~~-----~p~------~v~~lvl~~~~ 119 (272)
++.++++.+||||||.++=.+... .|+ ..+|+|+++.+
T Consensus 523 G~~RPivwI~HSmGGLl~K~lLlda~~S~kP~ms~l~kNtrGiiFls~P 571 (697)
T KOG2029|consen 523 GDDRPIVWIGHSMGGLLAKKLLLDAYCSSKPDMSNLNKNTRGIIFLSVP 571 (697)
T ss_pred CCCCceEEEecccchHHHHHHHHHHhhcCCchhhhhhccCCceEEEecC
Confidence 347899999999999887665432 232 35677777754
No 237
>KOG1283 consensus Serine carboxypeptidases [Posttranslational modification, protein turnover, chaperones]
Probab=92.50 E-value=0.47 Score=36.20 Aligned_cols=107 Identities=12% Similarity=0.135 Sum_probs=72.4
Q ss_pred cCCCeEEEEecCCCcchh----HHhhHH-----------HHHhCCCeEEEEcCC-CCCCCCccc--ccccchhhchHHHH
Q 024134 14 KKQKHFVLVHGSNHGAWC----WYKVKP-----------RLEAAGHRVTAMDLA-ASGINMKKI--QDVRSFYEYNEPLL 75 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~----~~~~~~-----------~l~~~g~~v~~~d~~-G~G~s~~~~--~~~~~~~~~~~~~~ 75 (272)
...|..+.+.|.++.+.. |+.+.+ -|. ...++.+|-| |.|.|-... ....+.++.+.|+.
T Consensus 29 s~~pl~lwlqGgpGaSstG~GNFeE~GPl~~~~~~r~~TWlk--~adllfvDnPVGaGfSyVdg~~~Y~~~~~qia~Dl~ 106 (414)
T KOG1283|consen 29 SERPLALWLQGGPGASSTGFGNFEELGPLDLDGSPRDWTWLK--DADLLFVDNPVGAGFSYVDGSSAYTTNNKQIALDLV 106 (414)
T ss_pred cCCCeeEEecCCCCCCCcCccchhhcCCcccCCCcCCchhhh--hccEEEecCCCcCceeeecCcccccccHHHHHHHHH
Confidence 456788889998766543 333221 121 2467888866 777775433 23347788899999
Q ss_pred HHHHHh------cCCCcEEEEEeCcchHHHHHHHhhCc---------cceeeeeeeeccCCC
Q 024134 76 EILASL------SADEKVILVGHSFGGLSVALAADKFP---------HKISVAIFLTAFMPD 122 (272)
Q Consensus 76 ~~i~~l------~~~~~~~lvG~S~Gg~~a~~~a~~~p---------~~v~~lvl~~~~~~~ 122 (272)
++++.+ -...|++++.-|.||-++..++...- ..+.+++|-++...+
T Consensus 107 ~llk~f~~~h~e~~t~P~~If~ESYGGKma~k~al~l~~aIk~G~i~~nf~~VaLGDSWISP 168 (414)
T KOG1283|consen 107 ELLKGFFTNHPEFKTVPLYIFCESYGGKMAAKFALELDDAIKRGEIKLNFIGVALGDSWISP 168 (414)
T ss_pred HHHHHHHhcCccccccceEEEEhhcccchhhhhhhhHHHHHhcCceeecceeEEccCcccCh
Confidence 999887 14568999999999999888876532 235677777766543
No 238
>PRK12467 peptide synthase; Provisional
Probab=92.45 E-value=1.1 Score=47.24 Aligned_cols=99 Identities=13% Similarity=0.023 Sum_probs=70.6
Q ss_pred CeEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcCCCcEEEEEeCcch
Q 024134 17 KHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSADEKVILVGHSFGG 96 (272)
Q Consensus 17 ~~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~lvG~S~Gg 96 (272)
+.+++.|...++...+..+...|.. +..++.+..++.-..... ..++++++....+.+.......+..+.|+|+||
T Consensus 3693 ~~l~~~h~~~r~~~~~~~l~~~l~~-~~~~~~l~~~~~~~d~~~---~~~~~~~~~~y~~~~~~~~~~~p~~l~g~s~g~ 3768 (3956)
T PRK12467 3693 PALFCRHEGLGTVFDYEPLAVILEG-DRHVLGLTCRHLLDDGWQ---DTSLQAMAVQYADYILWQQAKGPYGLLGWSLGG 3768 (3956)
T ss_pred cceeeechhhcchhhhHHHHHHhCC-CCcEEEEeccccccccCC---ccchHHHHHHHHHHHHHhccCCCeeeeeeecch
Confidence 5699999999888888888888853 478888877654322221 136777777777777766456789999999999
Q ss_pred HHHHHHHhh---Cccceeeeeeeecc
Q 024134 97 LSVALAADK---FPHKISVAIFLTAF 119 (272)
Q Consensus 97 ~~a~~~a~~---~p~~v~~lvl~~~~ 119 (272)
.++..++.. ..+.+.-+.+++..
T Consensus 3769 ~~a~~~~~~l~~~g~~~~~~~~~~~~ 3794 (3956)
T PRK12467 3769 TLARLVAELLEREGESEAFLGLFDNT 3794 (3956)
T ss_pred HHHHHHHHHHHHcCCceeEEEEEecc
Confidence 999888764 34556655565543
No 239
>KOG4540 consensus Putative lipase essential for disintegration of autophagic bodies inside the vacuole [Intracellular trafficking, secretion, and vesicular transport; Lipid transport and metabolism]
Probab=92.38 E-value=0.26 Score=36.81 Aligned_cols=32 Identities=28% Similarity=0.512 Sum_probs=24.8
Q ss_pred HHHHHhcCCCcEEEEEeCcchHHHHHHHhhCc
Q 024134 76 EILASLSADEKVILVGHSFGGLSVALAADKFP 107 (272)
Q Consensus 76 ~~i~~l~~~~~~~lvG~S~Gg~~a~~~a~~~p 107 (272)
..++.+....++.+-|||+||.+|..+..++.
T Consensus 267 ~~v~~~Ypda~iwlTGHSLGGa~AsLlG~~fg 298 (425)
T KOG4540|consen 267 GAVRRIYPDARIWLTGHSLGGAIASLLGIRFG 298 (425)
T ss_pred HHHHHhCCCceEEEeccccchHHHHHhccccC
Confidence 33334446788999999999999999987764
No 240
>COG5153 CVT17 Putative lipase essential for disintegration of autophagic bodies inside the vacuole [Intracellular trafficking and secretion / Lipid metabolism]
Probab=92.38 E-value=0.26 Score=36.81 Aligned_cols=32 Identities=28% Similarity=0.512 Sum_probs=24.8
Q ss_pred HHHHHhcCCCcEEEEEeCcchHHHHHHHhhCc
Q 024134 76 EILASLSADEKVILVGHSFGGLSVALAADKFP 107 (272)
Q Consensus 76 ~~i~~l~~~~~~~lvG~S~Gg~~a~~~a~~~p 107 (272)
..++.+....++.+-|||+||.+|..+..++.
T Consensus 267 ~~v~~~Ypda~iwlTGHSLGGa~AsLlG~~fg 298 (425)
T COG5153 267 GAVRRIYPDARIWLTGHSLGGAIASLLGIRFG 298 (425)
T ss_pred HHHHHhCCCceEEEeccccchHHHHHhccccC
Confidence 33334446788999999999999999987764
No 241
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=92.33 E-value=1.9 Score=33.97 Aligned_cols=86 Identities=19% Similarity=0.240 Sum_probs=61.8
Q ss_pred CCeEEEEecCCCcc-------hhHHhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcCCCcEE
Q 024134 16 QKHFVLVHGSNHGA-------WCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSADEKVI 88 (272)
Q Consensus 16 ~~~vv~lhG~~~~~-------~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~ 88 (272)
...||++||-+.++ +.|..+++.+.++| -+-.+|....|.-+ .+++-+..+..++... +-.
T Consensus 171 ~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r~-lip~~D~AYQGF~~-------GleeDa~~lR~~a~~~----~~~ 238 (396)
T COG1448 171 EGSVVLLHGCCHNPTGIDPTEEQWQELADLIKERG-LIPFFDIAYQGFAD-------GLEEDAYALRLFAEVG----PEL 238 (396)
T ss_pred CCCEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcC-Ceeeeehhhhhhcc-------chHHHHHHHHHHHHhC----CcE
Confidence 45699999987665 56999999998885 67777877666542 3555566666666644 228
Q ss_pred EEEeCcchHHHHHHHhhCccceeeeeeeec
Q 024134 89 LVGHSFGGLSVALAADKFPHKISVAIFLTA 118 (272)
Q Consensus 89 lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~ 118 (272)
+|..|+.=.++ .|.+||.++.+++.
T Consensus 239 lva~S~SKnfg-----LYgERVGa~~vva~ 263 (396)
T COG1448 239 LVASSFSKNFG-----LYGERVGALSVVAE 263 (396)
T ss_pred EEEehhhhhhh-----hhhhccceeEEEeC
Confidence 88888775544 47799999998865
No 242
>KOG4388 consensus Hormone-sensitive lipase HSL [Lipid transport and metabolism]
Probab=92.29 E-value=1.9 Score=35.98 Aligned_cols=97 Identities=16% Similarity=0.067 Sum_probs=52.9
Q ss_pred CCeEEEEecCCCcc---hhH----HhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHH---h-cCC
Q 024134 16 QKHFVLVHGSNHGA---WCW----YKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILAS---L-SAD 84 (272)
Q Consensus 16 ~~~vv~lhG~~~~~---~~~----~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~---l-~~~ 84 (272)
+-.|+-+||.|.-. ..- +.++..| |..|+.+|+-=--+.+-|. -.++..-....+|.. + .-.
T Consensus 396 ~sli~HcHGGGfVAqsSkSHE~YLr~Wa~aL---~cPiiSVdYSLAPEaPFPR----aleEv~fAYcW~inn~allG~Tg 468 (880)
T KOG4388|consen 396 RSLIVHCHGGGFVAQSSKSHEPYLRSWAQAL---GCPIISVDYSLAPEAPFPR----ALEEVFFAYCWAINNCALLGSTG 468 (880)
T ss_pred ceEEEEecCCceeeeccccccHHHHHHHHHh---CCCeEEeeeccCCCCCCCc----HHHHHHHHHHHHhcCHHHhCccc
Confidence 34678899987432 222 3344444 6899999985333332221 223332222233322 2 135
Q ss_pred CcEEEEEeCcchHHHHHH----HhhCccceeeeeeeecc
Q 024134 85 EKVILVGHSFGGLSVALA----ADKFPHKISVAIFLTAF 119 (272)
Q Consensus 85 ~~~~lvG~S~Gg~~a~~~----a~~~p~~v~~lvl~~~~ 119 (272)
++++++|-|.||.+.+.. ++..=..-+++++.-++
T Consensus 469 Eriv~aGDSAGgNL~~~VaLr~i~~gvRvPDGl~laY~p 507 (880)
T KOG4388|consen 469 ERIVLAGDSAGGNLCFTVALRAIAYGVRVPDGLMLAYPP 507 (880)
T ss_pred ceEEEeccCCCcceeehhHHHHHHhCCCCCCceEEecCh
Confidence 799999999999854444 43222223577766543
No 243
>KOG2385 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.80 E-value=0.27 Score=39.92 Aligned_cols=43 Identities=23% Similarity=0.274 Sum_probs=32.8
Q ss_pred cCCCcEEEEEeCcchHHHHHHHhhC-----ccceeeeeeeeccCCCCC
Q 024134 82 SADEKVILVGHSFGGLSVALAADKF-----PHKISVAIFLTAFMPDTK 124 (272)
Q Consensus 82 ~~~~~~~lvG~S~Gg~~a~~~a~~~-----p~~v~~lvl~~~~~~~~~ 124 (272)
.+.+|+.|||+|+|+.+........ -..|..+++++++.+...
T Consensus 444 qG~RPVTLVGFSLGARvIf~CL~~Lakkke~~iIEnViL~GaPv~~k~ 491 (633)
T KOG2385|consen 444 QGNRPVTLVGFSLGARVIFECLLELAKKKEVGIIENVILFGAPVPTKA 491 (633)
T ss_pred cCCCceeEeeeccchHHHHHHHHHHhhcccccceeeeeeccCCccCCH
Confidence 3789999999999999888665422 235889999998766543
No 244
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=89.52 E-value=2.6 Score=30.40 Aligned_cols=71 Identities=17% Similarity=0.118 Sum_probs=48.6
Q ss_pred HHHHHhCCC-eEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcCCCcEEEEEeCc----chHHHHHHHhhCc-cc
Q 024134 36 KPRLEAAGH-RVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSADEKVILVGHSF----GGLSVALAADKFP-HK 109 (272)
Q Consensus 36 ~~~l~~~g~-~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~lvG~S~----Gg~~a~~~a~~~p-~~ 109 (272)
...+...|. +|+..+.++.. .++.+.+++.+.++++.. + ..++++|+|. |..++-.+|.+.. ..
T Consensus 69 ~~~l~~~G~d~V~~~~~~~~~--------~~~~e~~a~al~~~i~~~-~-p~lVL~~~t~~~~~grdlaprlAarLga~l 138 (202)
T cd01714 69 LREALAMGADRAILVSDRAFA--------GADTLATAKALAAAIKKI-G-VDLILTGKQSIDGDTGQVGPLLAELLGWPQ 138 (202)
T ss_pred HHHHHHcCCCEEEEEeccccc--------CCChHHHHHHHHHHHHHh-C-CCEEEEcCCcccCCcCcHHHHHHHHhCCCc
Confidence 334444565 67777765322 267888999999999887 5 6799999998 7788888887653 23
Q ss_pred eeeeeee
Q 024134 110 ISVAIFL 116 (272)
Q Consensus 110 v~~lvl~ 116 (272)
+..++-+
T Consensus 139 vsdv~~l 145 (202)
T cd01714 139 ITYVSKI 145 (202)
T ss_pred cceEEEE
Confidence 4444433
No 245
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=88.57 E-value=3.7 Score=26.90 Aligned_cols=62 Identities=15% Similarity=0.150 Sum_probs=36.2
Q ss_pred cCCCeEEEEecCCCcchhH--HhhHHHHHhCCCe---EEEEcCCCCCCCCcccccccchhhchHHHHHHHHHh
Q 024134 14 KKQKHFVLVHGSNHGAWCW--YKVKPRLEAAGHR---VTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASL 81 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~~--~~~~~~l~~~g~~---v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l 81 (272)
+++|.|+-+||+.|++..| +-+++.|-++|.. |..+...-| ......+.++-+++..+|...
T Consensus 50 p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G~~S~~V~~f~~~~h------FP~~~~v~~Yk~~L~~~I~~~ 116 (127)
T PF06309_consen 50 PRKPLVLSFHGWTGTGKNFVSRLIAEHLYKSGMKSPFVHQFIATHH------FPHNSNVDEYKEQLKSWIRGN 116 (127)
T ss_pred CCCCEEEEeecCCCCcHHHHHHHHHHHHHhcccCCCceeeeccccc------CCCchHHHHHHHHHHHHHHHH
Confidence 6788889999999999887 3455665544432 222221110 001136666777777776654
No 246
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=88.48 E-value=1.2 Score=31.90 Aligned_cols=39 Identities=21% Similarity=0.293 Sum_probs=30.2
Q ss_pred cCCCeEEEEecCCCcchh--H-HhhHHHHHhCCCeEEEEcCC
Q 024134 14 KKQKHFVLVHGSNHGAWC--W-YKVKPRLEAAGHRVTAMDLA 52 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~--~-~~~~~~l~~~g~~v~~~d~~ 52 (272)
+.+++|.||+-.+.+... | ....+.|++.|..+.-+++-
T Consensus 30 g~~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L~l~ 71 (224)
T COG3340 30 GKRKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVSELHLS 71 (224)
T ss_pred CCCceEEEEecCccccchHHHHHHHHHHHHHcCCeeeeeecc
Confidence 346799999988877765 4 45678888899998888763
No 247
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=88.38 E-value=9.7 Score=30.65 Aligned_cols=98 Identities=16% Similarity=0.146 Sum_probs=63.4
Q ss_pred CeEEEEecCCCcc-hhHHhhHHHHHhCCCeEEEEcCCCCCCCCcccc----------------------cccchhhchHH
Q 024134 17 KHFVLVHGSNHGA-WCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQ----------------------DVRSFYEYNEP 73 (272)
Q Consensus 17 ~~vv~lhG~~~~~-~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~----------------------~~~~~~~~~~~ 73 (272)
|+|+++ |...+. ..+..+.+.+.+.|..++.+|.--.|.+..+.+ ....++.+++-
T Consensus 2 ~tI~ii-gT~DTK~~E~~yl~~~i~~~G~~v~~iDvg~~~~~~~~~di~~~eVa~~~g~~~~~~~~~~dRg~ai~~M~~g 80 (403)
T PF06792_consen 2 KTIAII-GTLDTKGEELLYLRDQIEAQGVEVLLIDVGTLGEPSFPPDISREEVARAAGDSIEAVRSSGDRGEAIEAMARG 80 (403)
T ss_pred CEEEEE-EccCCCHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCcCHHHHHHhcCCChHHhhccCCHHHHHHHHHHH
Confidence 445555 444444 457778888888999999999755554432211 00122334444
Q ss_pred HHHHHHHhc---CCCcEEEEEeCcchHHHHHHHhhCccceeeeee
Q 024134 74 LLEILASLS---ADEKVILVGHSFGGLSVALAADKFPHKISVAIF 115 (272)
Q Consensus 74 ~~~~i~~l~---~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl 115 (272)
...++..+. ...-++-+|-|.|..++.......|=-+-+++.
T Consensus 81 a~~~v~~l~~~g~i~Gvi~~GGs~GT~lat~aMr~LPiG~PKlmV 125 (403)
T PF06792_consen 81 AARFVSDLYDEGKIDGVIGIGGSGGTALATAAMRALPIGFPKLMV 125 (403)
T ss_pred HHHHHHHHHhcCCccEEEEecCCccHHHHHHHHHhCCCCCCeEEE
Confidence 555565552 345678889999999999999888866666553
No 248
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=88.06 E-value=7.3 Score=27.37 Aligned_cols=37 Identities=16% Similarity=0.169 Sum_probs=31.0
Q ss_pred cCCCeEEEEecCCCcchh--HHhhHHHHHhCCCeEEEEc
Q 024134 14 KKQKHFVLVHGSNHGAWC--WYKVKPRLEAAGHRVTAMD 50 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~--~~~~~~~l~~~g~~v~~~d 50 (272)
+.++.+|++-|+.+++.. -..+.+.|.++|++++..|
T Consensus 20 ~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LD 58 (197)
T COG0529 20 GQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLD 58 (197)
T ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 567889999999888766 3456788888999999998
No 249
>PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ]. It also includes several bacterial homologues of unknown function.
Probab=85.78 E-value=1.7 Score=35.93 Aligned_cols=60 Identities=12% Similarity=-0.006 Sum_probs=44.0
Q ss_pred CceeEEEEeCCCCCccHHHHHHHH----hcCC--------CceEEEecCCCcccccC--CCchHHHHHHHHHHh
Q 024134 211 SVKRDFVGSDKDNCIPKEFQQWMI----QNNP--------VNEVMAIKGADHMAMLS--KPQPLSDCFSQIAHK 270 (272)
Q Consensus 211 ~~P~l~i~g~~D~~~~~~~~~~~~----~~~~--------~~~~~~~~~~gH~~~~~--~p~~~~~~i~~fl~~ 270 (272)
.-.+++.||..|.++|+.....+. +... -.++..+||.+|+.--. .+-.....|.+|+++
T Consensus 353 GGKLI~~HG~aD~~I~p~~ti~YY~~V~~~~g~~~~~v~dF~RlF~vPGm~HC~gG~g~~~~d~l~aL~~WVE~ 426 (474)
T PF07519_consen 353 GGKLILYHGWADPLIPPQGTIDYYERVVARMGGALADVDDFYRLFMVPGMGHCGGGPGPDPFDALTALVDWVEN 426 (474)
T ss_pred CCeEEEEecCCCCccCCCcHHHHHHHHHHhcccccccccceeEEEecCCCcccCCCCCCCCCCHHHHHHHHHhC
Confidence 568999999999999876544433 3332 24789999999997654 345577888888875
No 250
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=84.61 E-value=8.8 Score=26.36 Aligned_cols=36 Identities=19% Similarity=0.174 Sum_probs=27.6
Q ss_pred CCeEEEEecCCCcchh--HHhhHHHHHhCCCeEEEEcC
Q 024134 16 QKHFVLVHGSNHGAWC--WYKVKPRLEAAGHRVTAMDL 51 (272)
Q Consensus 16 ~~~vv~lhG~~~~~~~--~~~~~~~l~~~g~~v~~~d~ 51 (272)
++.+|++-|..+++.. -..+...|.+.|+.++.+|-
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDg 38 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDG 38 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecC
Confidence 4689999999988865 35677788888999999973
No 251
>PRK02399 hypothetical protein; Provisional
Probab=84.43 E-value=20 Score=28.95 Aligned_cols=98 Identities=20% Similarity=0.150 Sum_probs=60.7
Q ss_pred CeEEEEecCCCcc-hhHHhhHHHHHhCCCeEEEEcCCCCCCCCcccc----------------------cccchhhchHH
Q 024134 17 KHFVLVHGSNHGA-WCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQ----------------------DVRSFYEYNEP 73 (272)
Q Consensus 17 ~~vv~lhG~~~~~-~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~----------------------~~~~~~~~~~~ 73 (272)
++| ++=|...+. ..+..+.+.+.+.|..|+.+|.-..|....+.+ ....++.+++-
T Consensus 4 ~~I-~iigT~DTK~~E~~yl~~~i~~~g~~v~~iDv~~~~~p~~~~dis~~~Va~~~g~~~~~~~~~~dRg~ai~~M~~g 82 (406)
T PRK02399 4 KRI-YIAGTLDTKGEELAYVKDLIEAAGLEVVTVDVSGLGEPPFEPDISAEEVAEAAGDGIEAVFCGGDRGSAMAAMAEG 82 (406)
T ss_pred CEE-EEEeccCCcHHHHHHHHHHHHHCCCceEEEecCCCCCCCCCCCCCHHHHHHHcCCCHHHhhcCccHHHHHHHHHHH
Confidence 444 444655555 446667777877899999999844442211110 00112334444
Q ss_pred HHHHHHHh---cCCCcEEEEEeCcchHHHHHHHhhCccceeeeee
Q 024134 74 LLEILASL---SADEKVILVGHSFGGLSVALAADKFPHKISVAIF 115 (272)
Q Consensus 74 ~~~~i~~l---~~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl 115 (272)
...+++.+ ....-++-+|-|.|..++.......|=-+-+++.
T Consensus 83 a~~~v~~L~~~g~i~gviglGGs~GT~lat~aMr~LPiG~PKlmV 127 (406)
T PRK02399 83 AAAFVRELYERGDVAGVIGLGGSGGTALATPAMRALPIGVPKLMV 127 (406)
T ss_pred HHHHHHHHHhcCCccEEEEecCcchHHHHHHHHHhCCCCCCeEEE
Confidence 55555554 2456688899999999999999888866666553
No 252
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=83.46 E-value=10 Score=30.61 Aligned_cols=38 Identities=21% Similarity=0.280 Sum_probs=30.4
Q ss_pred EEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCCCCCCCC
Q 024134 19 FVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINM 58 (272)
Q Consensus 19 vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~ 58 (272)
|||+|+.. +..|+.+++.|+++|+.|..+-..+.+..+
T Consensus 2 il~~~~~~--p~~~~~la~~L~~~G~~v~~~~~~~~~~~~ 39 (396)
T cd03818 2 ILFVHQNF--PGQFRHLAPALAAQGHEVVFLTEPNAAPPP 39 (396)
T ss_pred EEEECCCC--chhHHHHHHHHHHCCCEEEEEecCCCCCCC
Confidence 78999764 355889999999999999998777765543
No 253
>COG2939 Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism]
Probab=82.82 E-value=1.3 Score=36.23 Aligned_cols=59 Identities=12% Similarity=0.088 Sum_probs=38.2
Q ss_pred CceeEEEEeCCCCCccHHHHHHHHhcCC-------CceEEEecCCCcccccCCCchHHHHHHHHHHh
Q 024134 211 SVKRDFVGSDKDNCIPKEFQQWMIQNNP-------VNEVMAIKGADHMAMLSKPQPLSDCFSQIAHK 270 (272)
Q Consensus 211 ~~P~l~i~g~~D~~~~~~~~~~~~~~~~-------~~~~~~~~~~gH~~~~~~p~~~~~~i~~fl~~ 270 (272)
+.+++...|=.|..+|+.......+..+ ...+.+++ +||+++.++|+...+.+..|+.-
T Consensus 425 ~Lkw~~~~g~~d~~~~~~~~~~t~e~~~~~~s~~n~~~~r~y~-aGHMvp~d~P~~~~~~~~~~~~~ 490 (498)
T COG2939 425 KLKWLGASGYFDASTPFFWSRLTLEEMGGYKSYRNLTFLRIYE-AGHMVPYDRPESSLEMVNLWING 490 (498)
T ss_pred cceEeeecchhhhcCCCcccccchhhcccccccCCceEEEEec-CcceeecCChHHHHHHHHHHHhh
Confidence 4455666666666665544332222222 23445566 99999999999999999888754
No 254
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=82.07 E-value=6.8 Score=28.99 Aligned_cols=88 Identities=15% Similarity=0.041 Sum_probs=47.2
Q ss_pred CCCeEEEEecCCCc--chhH-HhhHHHHHhCCCeEEEEcCCCCC-----CCCc---ccccccchhhchH--HHHHHHHHh
Q 024134 15 KQKHFVLVHGSNHG--AWCW-YKVKPRLEAAGHRVTAMDLAASG-----INMK---KIQDVRSFYEYNE--PLLEILASL 81 (272)
Q Consensus 15 ~~~~vv~lhG~~~~--~~~~-~~~~~~l~~~g~~v~~~d~~G~G-----~s~~---~~~~~~~~~~~~~--~~~~~i~~l 81 (272)
.+|.|+||+-.... ...| +.+...+.+.|+.+..++.+.-- ..+. .-++...+-.... .+.+.|+..
T Consensus 30 ~~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~~d~~~~l~~ad~I~v~GGnt~~l~~~l~~~gl~~~l~~~ 109 (233)
T PRK05282 30 GRRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRVADPVAAIENAEAIFVGGGNTFQLLKQLYERGLLAPIREA 109 (233)
T ss_pred CCCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccchhhHHHHhcCCEEEECCccHHHHHHHHHHCCcHHHHHHH
Confidence 56889999987733 3333 45667777789998888765210 0000 0001011111111 233334333
Q ss_pred cCCCcEEEEEeCcchHHHHHHH
Q 024134 82 SADEKVILVGHSFGGLSVALAA 103 (272)
Q Consensus 82 ~~~~~~~lvG~S~Gg~~a~~~a 103 (272)
-.+...++|.|.|+.++....
T Consensus 110 -~~~G~~~~G~SAGAii~~~~i 130 (233)
T PRK05282 110 -VKNGTPYIGWSAGANVAGPTI 130 (233)
T ss_pred -HHCCCEEEEECHHHHhhhccc
Confidence 123477999999998754433
No 255
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=81.01 E-value=6.9 Score=28.26 Aligned_cols=64 Identities=16% Similarity=0.262 Sum_probs=39.8
Q ss_pred CCCeEEEEecCCCcch---hHHhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHh
Q 024134 15 KQKHFVLVHGSNHGAW---CWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASL 81 (272)
Q Consensus 15 ~~~~vv~lhG~~~~~~---~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l 81 (272)
..+|++++||.....- .-..+...|.+.|..+...-+++.|..-... ....++.+.+.+++++.
T Consensus 143 ~~~P~li~hG~~D~~Vp~~~s~~~~~~L~~~g~~~~~~~~p~~gH~~~~~---~~~~~~~~~~~~f~~~~ 209 (213)
T PF00326_consen 143 IKPPVLIIHGENDPRVPPSQSLRLYNALRKAGKPVELLIFPGEGHGFGNP---ENRRDWYERILDFFDKY 209 (213)
T ss_dssp GGSEEEEEEETTBSSSTTHHHHHHHHHHHHTTSSEEEEEETT-SSSTTSH---HHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEccCCCCccCHHHHHHHHHHHHhcCCCEEEEEcCcCCCCCCCc---hhHHHHHHHHHHHHHHH
Confidence 5789999999865533 2346778888888777777666655422111 13335666666666653
No 256
>cd07225 Pat_PNPLA6_PNPLA7 Patatin-like phospholipase domain containing protein 6 and protein 7. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are 60% identical to each other. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologous to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and pancreatic tissue. NRE
Probab=81.01 E-value=2.6 Score=32.63 Aligned_cols=33 Identities=21% Similarity=0.202 Sum_probs=26.3
Q ss_pred HHHHHHHHhcCCCcEEEEEeCcchHHHHHHHhhC
Q 024134 73 PLLEILASLSADEKVILVGHSFGGLSVALAADKF 106 (272)
Q Consensus 73 ~~~~~i~~l~~~~~~~lvG~S~Gg~~a~~~a~~~ 106 (272)
-+.+.+++. +...-.++|.|+|+.++..+|..+
T Consensus 32 GvL~aLee~-gi~~d~v~GtSaGAi~ga~ya~g~ 64 (306)
T cd07225 32 GVIKALEEA-GIPVDMVGGTSIGAFIGALYAEER 64 (306)
T ss_pred HHHHHHHHc-CCCCCEEEEECHHHHHHHHHHcCC
Confidence 345566666 777888999999999999999764
No 257
>cd07198 Patatin Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes PNPLA (1-9), TGL (3-5), ExoU-like, and SDP1-like subfamilies. There are some additional hypothetical proteins included in this family.
Probab=80.42 E-value=3 Score=29.06 Aligned_cols=33 Identities=24% Similarity=0.200 Sum_probs=25.3
Q ss_pred HHHHHHHhcCCCcEEEEEeCcchHHHHHHHhhCc
Q 024134 74 LLEILASLSADEKVILVGHSFGGLSVALAADKFP 107 (272)
Q Consensus 74 ~~~~i~~l~~~~~~~lvG~S~Gg~~a~~~a~~~p 107 (272)
+.+.+++. +...-.+.|-|.|+.++..++...+
T Consensus 16 vl~aL~e~-gi~~d~v~GtSaGAi~aa~~a~g~~ 48 (172)
T cd07198 16 VAKALRER-GPLIDIIAGTSAGAIVAALLASGRD 48 (172)
T ss_pred HHHHHHHc-CCCCCEEEEECHHHHHHHHHHcCCC
Confidence 33444444 6678889999999999999997654
No 258
>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family. Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.
Probab=80.15 E-value=11 Score=28.48 Aligned_cols=71 Identities=11% Similarity=0.111 Sum_probs=48.4
Q ss_pred cCCCeEEEEecCCCcch--hHHhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcCCCcEEEEE
Q 024134 14 KKQKHFVLVHGSNHGAW--CWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSADEKVILVG 91 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~--~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~lvG 91 (272)
+..|+||++.|+-+++. .-..+...|..+|++|.++.-| .+-+..-.-+-.+-.+++..+.+.+.=
T Consensus 53 ~~~~vlIv~eG~DaAGKG~~I~~l~~~lDPRg~~V~s~~~P------------t~eE~~~p~lWRfw~~lP~~G~i~IF~ 120 (264)
T TIGR03709 53 GRRSLLLVLQAMDAAGKDGTIRHVMSGVNPQGCQVTSFKAP------------SAEELDHDFLWRIHKALPERGEIGIFN 120 (264)
T ss_pred CCCcEEEEEECCCCCCchHHHHHHHHhcCCCeeEEEeCCCC------------CHHHHcCchHHHHHHhCCCCCeEEEEc
Confidence 34599999999977664 4678888888899999999655 121222223456667775667777776
Q ss_pred eCcch
Q 024134 92 HSFGG 96 (272)
Q Consensus 92 ~S~Gg 96 (272)
-|+=+
T Consensus 121 RSWY~ 125 (264)
T TIGR03709 121 RSHYE 125 (264)
T ss_pred Ccccc
Confidence 66543
No 259
>PF09994 DUF2235: Uncharacterized alpha/beta hydrolase domain (DUF2235); InterPro: IPR018712 This domain has no known function.
Probab=79.90 E-value=22 Score=27.15 Aligned_cols=89 Identities=11% Similarity=0.132 Sum_probs=48.3
Q ss_pred CeEEEEecCCCcchhH------HhhHHHH-HhCCCeEEEEcCCCCCCC--------Ccccc------cccchhhchHHHH
Q 024134 17 KHFVLVHGSNHGAWCW------YKVKPRL-EAAGHRVTAMDLAASGIN--------MKKIQ------DVRSFYEYNEPLL 75 (272)
Q Consensus 17 ~~vv~lhG~~~~~~~~------~~~~~~l-~~~g~~v~~~d~~G~G~s--------~~~~~------~~~~~~~~~~~~~ 75 (272)
..|||+=|.+.+...= ..+.+.+ ...+-..+.+=.+|-|.. ..... -...+++-+.+..
T Consensus 2 ~iv~~fDGT~n~~~~~~~~TNV~rL~~~~~~~~~~~q~~~Y~~GvGt~~~~~~~~~~~~~~~~~~~a~g~g~~~~I~~ay 81 (277)
T PF09994_consen 2 RIVVFFDGTGNNPDNDPPPTNVARLYDAYKDRDGERQIVYYIPGVGTEFGSEFGESGRALDRLLGGAFGWGIEARIRDAY 81 (277)
T ss_pred cEEEEecCCCCCCCCCccccHHHHHHHHhhccCCCceeEEEecccccccccccccccchhhhccCchhhcchHHHHHHHH
Confidence 4567777776444321 2334444 222335555566777772 11100 0123333333322
Q ss_pred H-HHHHhcCCCcEEEEEeCcchHHHHHHHhh
Q 024134 76 E-ILASLSADEKVILVGHSFGGLSVALAADK 105 (272)
Q Consensus 76 ~-~i~~l~~~~~~~lvG~S~Gg~~a~~~a~~ 105 (272)
. +.+......++.++|.|-|+..|-.+|..
T Consensus 82 ~~l~~~~~~gd~I~lfGFSRGA~~AR~~a~~ 112 (277)
T PF09994_consen 82 RFLSKNYEPGDRIYLFGFSRGAYTARAFANM 112 (277)
T ss_pred HHHHhccCCcceEEEEecCccHHHHHHHHHH
Confidence 2 22333466789999999999999999854
No 260
>cd07207 Pat_ExoU_VipD_like ExoU and VipD-like proteins; homologus to patatin, cPLA2, and iPLA2. ExoU, a 74-kDa enzyme, is a potent virulence factor of Pseudomonas aeruginosa. One of the pathogenic mechanisms of P. aeruginosa is to induce cytotoxicity by the injection of effector proteins (e.g. ExoU) using the type III secretion (T3S) system. ExoU is homologus to patatin and also has the conserved catalytic residues of mammalian calcium-independent (iPLA2) and cytosolic (cPLA2) PLA2. In vitro, ExoU cytotoxity is blocked by the inhibitor of cytosolic and Ca2-independent phospholipase A2 (cPLA2 and iPLA2) enzymes, suggesting that phospholipase A2 inhibitors may represent a novel mode of treatment for acute P. aeruginosa infections. ExoU requires eukaryotic superoxide dismutase as a cofactor and cleaves phosphatidylcholine and phosphatidylethanolamine in vitro. VipD, a 69-kDa cytosolic protein, belongs to the members of Legionella pneumophila family and is homologus to ExoU from Pseudomona
Probab=79.74 E-value=3.1 Score=29.61 Aligned_cols=32 Identities=28% Similarity=0.277 Sum_probs=24.1
Q ss_pred HHHHHHHhcCCCcEEEEEeCcchHHHHHHHhhC
Q 024134 74 LLEILASLSADEKVILVGHSFGGLSVALAADKF 106 (272)
Q Consensus 74 ~~~~i~~l~~~~~~~lvG~S~Gg~~a~~~a~~~ 106 (272)
+.+.+++. +..+-.++|-|.||.++..++..+
T Consensus 17 vl~~L~e~-~~~~d~i~GtSaGai~aa~~a~g~ 48 (194)
T cd07207 17 ALKALEEA-GILKKRVAGTSAGAITAALLALGY 48 (194)
T ss_pred HHHHHHHc-CCCcceEEEECHHHHHHHHHHcCC
Confidence 33444444 566788999999999999999754
No 261
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=78.68 E-value=22 Score=25.56 Aligned_cols=73 Identities=22% Similarity=0.147 Sum_probs=44.5
Q ss_pred hhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcCCCcEEEEEeCcchHHHHHHHhhCcc--cee
Q 024134 34 KVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSADEKVILVGHSFGGLSVALAADKFPH--KIS 111 (272)
Q Consensus 34 ~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~lvG~S~Gg~~a~~~a~~~p~--~v~ 111 (272)
...+.+.++++.++.+|-+|... .-.+..+.+.++++.. ....+++|=-+..+.-.+..+..+-+ .++
T Consensus 74 ~~l~~~~~~~~D~vlIDT~Gr~~---------~d~~~~~el~~~~~~~-~~~~~~LVlsa~~~~~~~~~~~~~~~~~~~~ 143 (196)
T PF00448_consen 74 EALEKFRKKGYDLVLIDTAGRSP---------RDEELLEELKKLLEAL-NPDEVHLVLSATMGQEDLEQALAFYEAFGID 143 (196)
T ss_dssp HHHHHHHHTTSSEEEEEE-SSSS---------THHHHHHHHHHHHHHH-SSSEEEEEEEGGGGGHHHHHHHHHHHHSSTC
T ss_pred HHHHHHhhcCCCEEEEecCCcch---------hhHHHHHHHHHHhhhc-CCccceEEEecccChHHHHHHHHHhhcccCc
Confidence 34445556789999999988653 2245566777788877 55666666555555555544444322 367
Q ss_pred eeeee
Q 024134 112 VAIFL 116 (272)
Q Consensus 112 ~lvl~ 116 (272)
++|+.
T Consensus 144 ~lIlT 148 (196)
T PF00448_consen 144 GLILT 148 (196)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 77754
No 262
>PF00698 Acyl_transf_1: Acyl transferase domain; InterPro: IPR014043 Enzymes like bacterial malonyl CoA-acly carrier protein transacylase (2.3.1.39 from EC) and eukaryotic fatty acid synthase (2.3.1.85 from EC) that are involved in fatty acid biosynthesis belong to this group. Also included are the polyketide synthases 6-methylsalicylic acid synthase (2.3.1 from EC), a multifunctional enzyme that involved in the biosynthesis of patulin and conidial green pigment synthase (2.3.1 from EC).; PDB: 3HHD_C 2JFD_D 2JFK_A 3G87_A 3IM9_A 2QO3_B 3IM8_A 3EZO_A 2QJ3_A 2QC3_A ....
Probab=78.45 E-value=1.7 Score=33.91 Aligned_cols=30 Identities=30% Similarity=0.431 Sum_probs=23.2
Q ss_pred HHHHHHHhcCCCcEEEEEeCcchHHHHHHHh
Q 024134 74 LLEILASLSADEKVILVGHSFGGLSVALAAD 104 (272)
Q Consensus 74 ~~~~i~~l~~~~~~~lvG~S~Gg~~a~~~a~ 104 (272)
+.++++.. +.+|..++|||+|=..|+.++.
T Consensus 74 l~~~l~~~-Gi~P~~v~GhSlGE~aA~~aaG 103 (318)
T PF00698_consen 74 LARLLRSW-GIKPDAVIGHSLGEYAALVAAG 103 (318)
T ss_dssp HHHHHHHT-THCESEEEESTTHHHHHHHHTT
T ss_pred hhhhhccc-ccccceeeccchhhHHHHHHCC
Confidence 34555666 7899999999999888876654
No 263
>PRK10279 hypothetical protein; Provisional
Probab=78.25 E-value=3.3 Score=31.95 Aligned_cols=33 Identities=27% Similarity=0.202 Sum_probs=25.9
Q ss_pred HHHHHHHhcCCCcEEEEEeCcchHHHHHHHhhCc
Q 024134 74 LLEILASLSADEKVILVGHSFGGLSVALAADKFP 107 (272)
Q Consensus 74 ~~~~i~~l~~~~~~~lvG~S~Gg~~a~~~a~~~p 107 (272)
+.+.+++. +...-.++|.|+|+.++..+|....
T Consensus 23 VL~aL~E~-gi~~d~i~GtS~GAlvga~yA~g~~ 55 (300)
T PRK10279 23 VINALKKV-GIEIDIVAGCSIGSLVGAAYACDRL 55 (300)
T ss_pred HHHHHHHc-CCCcCEEEEEcHHHHHHHHHHcCCh
Confidence 34455555 7788899999999999999997654
No 264
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=77.79 E-value=30 Score=27.87 Aligned_cols=90 Identities=17% Similarity=0.131 Sum_probs=58.9
Q ss_pred hhhHHhhhhhhccC-C-CeEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHH
Q 024134 2 ELTEKVKKMTEAKK-Q-KHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILA 79 (272)
Q Consensus 2 ~~~~~~~~~~~~~~-~-~~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~ 79 (272)
++.+...+|..+.. + -.|+..--++.+...-+.+++.|.+.|..|..+++.- . +..++++
T Consensus 232 ~i~~~Y~~W~~~~~~~~V~l~Y~smyg~T~~ma~aiaegl~~~gv~v~~~~~~~--------------~----~~~eI~~ 293 (388)
T COG0426 232 EIVEAYRDWAEGQPKGKVDLIYDSMYGNTEKMAQAIAEGLMKEGVDVEVINLED--------------A----DPSEIVE 293 (388)
T ss_pred HHHHHHHHHHccCCcceEEEEEecccCCHHHHHHHHHHHhhhcCCceEEEEccc--------------C----CHHHHHH
Confidence 45677777866632 3 2344444455566667788888988999999988641 1 4445666
Q ss_pred HhcCCCcEEEEEeC---------cchHHHHHHHhhCccce
Q 024134 80 SLSADEKVILVGHS---------FGGLSVALAADKFPHKI 110 (272)
Q Consensus 80 ~l~~~~~~~lvG~S---------~Gg~~a~~~a~~~p~~v 110 (272)
.+ ...+-+++|.+ ++..+....+...+++.
T Consensus 294 ~i-~~a~~~vvGsPT~~~~~~p~i~~~l~~v~~~~~~~k~ 332 (388)
T COG0426 294 EI-LDAKGLVVGSPTINGGAHPPIQTALGYVLALAPKNKL 332 (388)
T ss_pred HH-hhcceEEEecCcccCCCCchHHHHHHHHHhccCcCce
Confidence 66 56778888888 45556666666666655
No 265
>cd07227 Pat_Fungal_NTE1 Fungal patatin-like phospholipase domain containing protein 6. These are fungal Neuropathy Target Esterase (NTE), commonly referred to as NTE1. Patatin-like phospholipase. NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This family includes NTE1 from fungi.
Probab=77.58 E-value=3.9 Score=30.97 Aligned_cols=32 Identities=22% Similarity=0.190 Sum_probs=25.3
Q ss_pred HHHHHHHhcCCCcEEEEEeCcchHHHHHHHhhC
Q 024134 74 LLEILASLSADEKVILVGHSFGGLSVALAADKF 106 (272)
Q Consensus 74 ~~~~i~~l~~~~~~~lvG~S~Gg~~a~~~a~~~ 106 (272)
+.+.+++. +...-.+.|-|+|+.++..+|...
T Consensus 28 VL~aLeE~-gi~~d~v~GtSaGAiiga~ya~g~ 59 (269)
T cd07227 28 ILQALEEA-GIPIDAIGGTSIGSFVGGLYAREA 59 (269)
T ss_pred HHHHHHHc-CCCccEEEEECHHHHHHHHHHcCC
Confidence 44555556 777788999999999999999763
No 266
>smart00827 PKS_AT Acyl transferase domain in polyketide synthase (PKS) enzymes.
Probab=77.46 E-value=3.2 Score=31.95 Aligned_cols=30 Identities=27% Similarity=0.346 Sum_probs=23.3
Q ss_pred HHHHHHhcCCCcEEEEEeCcchHHHHHHHhh
Q 024134 75 LEILASLSADEKVILVGHSFGGLSVALAADK 105 (272)
Q Consensus 75 ~~~i~~l~~~~~~~lvG~S~Gg~~a~~~a~~ 105 (272)
.++++.. +.++-.++|||+|-..|+.++..
T Consensus 73 ~~~l~~~-Gi~p~~~~GhSlGE~aA~~~ag~ 102 (298)
T smart00827 73 ARLWRSW-GVRPDAVVGHSLGEIAAAYVAGV 102 (298)
T ss_pred HHHHHHc-CCcccEEEecCHHHHHHHHHhCC
Confidence 3445566 78899999999999988777643
No 267
>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).
Probab=77.38 E-value=17 Score=26.86 Aligned_cols=71 Identities=17% Similarity=0.233 Sum_probs=49.9
Q ss_pred cCCCeEEEEecCCCcch--hHHhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchH-HHHHHHHHhcCCCcEEEE
Q 024134 14 KKQKHFVLVHGSNHGAW--CWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNE-PLLEILASLSADEKVILV 90 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~--~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~-~~~~~i~~l~~~~~~~lv 90 (272)
.+.|.||++.|+.+++. .-..+...|..+|++|.++.-| +-++... -+-.+-+.++..+.+.+.
T Consensus 28 ~~~~vlIv~eG~DaAGKg~~I~~l~~~lDPRg~~v~~~~~p-------------t~eE~~~p~lwRfw~~lP~~G~i~IF 94 (230)
T TIGR03707 28 TGARVVIVFEGRDAAGKGGTIKRITEHLNPRGARVVALPKP-------------SDRERTQWYFQRYVQHLPAAGEIVLF 94 (230)
T ss_pred cCCCEEEEEeCCCCCCchHHHHHHHHhcCCCeeEEEeCCCC-------------CHHHHcChHHHHHHHhCCCCCeEEEE
Confidence 45699999999977664 3678888888899999998765 2223322 345666777666778887
Q ss_pred EeCcchH
Q 024134 91 GHSFGGL 97 (272)
Q Consensus 91 G~S~Gg~ 97 (272)
=-|+=+-
T Consensus 95 ~rSwY~~ 101 (230)
T TIGR03707 95 DRSWYNR 101 (230)
T ss_pred eCchhhh
Confidence 6665444
No 268
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=77.25 E-value=23 Score=28.70 Aligned_cols=73 Identities=14% Similarity=0.072 Sum_probs=41.9
Q ss_pred CeEEEEecCCCcc---hhHHhhHHHHHhCCCeEEEEcCCC--CCCCCcccccccchhhchHHHHHHHHH---hcCCCcEE
Q 024134 17 KHFVLVHGSNHGA---WCWYKVKPRLEAAGHRVTAMDLAA--SGINMKKIQDVRSFYEYNEPLLEILAS---LSADEKVI 88 (272)
Q Consensus 17 ~~vv~lhG~~~~~---~~~~~~~~~l~~~g~~v~~~d~~G--~G~s~~~~~~~~~~~~~~~~~~~~i~~---l~~~~~~~ 88 (272)
.++|+++-+.... .....-+..|.+.|+.|+-+..-- +|+.... ...+.++.++.+...+.. + ..+++.
T Consensus 113 ~plviaPamn~~m~~~p~~~~Nl~~L~~~G~~vv~P~~g~~ac~~~g~g--~~~~~~~i~~~v~~~~~~~~~~-~~~~vl 189 (390)
T TIGR00521 113 APIILAPAMNENMYNNPAVQENIKRLKDDGYIFIEPDSGLLACGDEGKG--RLAEPETIVKAAEREFSPKEDL-EGKRVL 189 (390)
T ss_pred CCEEEEeCCChhhcCCHHHHHHHHHHHHCCcEEECCCCcccccccccCC--CCCCHHHHHHHHHHHHhhcccc-CCceEE
Confidence 5677777643222 233556677887888776665321 2333222 224777787777777654 4 445666
Q ss_pred EEEe
Q 024134 89 LVGH 92 (272)
Q Consensus 89 lvG~ 92 (272)
+.|-
T Consensus 190 it~g 193 (390)
T TIGR00521 190 ITAG 193 (390)
T ss_pred EecC
Confidence 6555
No 269
>cd07210 Pat_hypo_W_succinogenes_WS1459_like Hypothetical patatin similar to WS1459 of Wolinella succinogenes. Patatin-like phospholipase. This family predominantly consists of bacterial patatin glycoproteins. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=76.54 E-value=4.9 Score=29.45 Aligned_cols=31 Identities=26% Similarity=0.248 Sum_probs=23.4
Q ss_pred HHHHHhcCCCcEEEEEeCcchHHHHHHHhhCc
Q 024134 76 EILASLSADEKVILVGHSFGGLSVALAADKFP 107 (272)
Q Consensus 76 ~~i~~l~~~~~~~lvG~S~Gg~~a~~~a~~~p 107 (272)
+.+++. +.+.-.++|-|.|+.++..+|...+
T Consensus 20 ~aL~e~-gi~~~~i~GtSaGAi~aa~~a~g~~ 50 (221)
T cd07210 20 AALLEM-GLEPSAISGTSAGALVGGLFASGIS 50 (221)
T ss_pred HHHHHc-CCCceEEEEeCHHHHHHHHHHcCCC
Confidence 344444 5667789999999999999997543
No 270
>TIGR03131 malonate_mdcH malonate decarboxylase, epsilon subunit. Members of this protein family are the epsilon subunit of malonate decarboxylase. This subunit has malonyl-CoA/dephospho-CoA acyltransferase activity. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. The epsilon subunit is closely related to the malonyl CoA-acyl carrier protein (ACP) transacylase family described by TIGR00128, but acts on an ACP subunit of malonate decarboxylase that has an unusual coenzyme A derivative as its prothetic group.
Probab=75.90 E-value=3.7 Score=31.56 Aligned_cols=30 Identities=23% Similarity=0.264 Sum_probs=23.0
Q ss_pred HHHHHHhcCCCcEEEEEeCcchHHHHHHHhh
Q 024134 75 LEILASLSADEKVILVGHSFGGLSVALAADK 105 (272)
Q Consensus 75 ~~~i~~l~~~~~~~lvG~S~Gg~~a~~~a~~ 105 (272)
.+.++.. +.+|..++|||+|=..|+.++..
T Consensus 67 ~~~l~~~-g~~P~~v~GhS~GE~aAa~~aG~ 96 (295)
T TIGR03131 67 WRALLAL-LPRPSAVAGYSVGEYAAAVVAGV 96 (295)
T ss_pred HHHHHhc-CCCCcEEeecCHHHHHHHHHhCC
Confidence 3445555 77899999999999888877643
No 271
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=75.86 E-value=32 Score=27.98 Aligned_cols=71 Identities=13% Similarity=0.148 Sum_probs=42.0
Q ss_pred CCeEEEEecCCCcchhH-----HhhHHHHHhCCCeEEEEcCCC---CCCCCcccccccchhhchHHHHHHHHH--hcCCC
Q 024134 16 QKHFVLVHGSNHGAWCW-----YKVKPRLEAAGHRVTAMDLAA---SGINMKKIQDVRSFYEYNEPLLEILAS--LSADE 85 (272)
Q Consensus 16 ~~~vv~lhG~~~~~~~~-----~~~~~~l~~~g~~v~~~d~~G---~G~s~~~~~~~~~~~~~~~~~~~~i~~--l~~~~ 85 (272)
+.++|+++.+ +..+| ..-+..|.+.|+.|+-+. +| +|..... ...+.++.++.+...+.. + ..+
T Consensus 116 ~~pvvi~Pam--n~~m~~~p~~~~Nl~~L~~~G~~ii~P~-~g~la~~~~g~g--r~~~~~~I~~~~~~~~~~~~l-~gk 189 (399)
T PRK05579 116 TAPVLVAPAM--NTQMWENPATQRNLATLRSRGVEIIGPA-SGRLACGDVGPG--RMAEPEEIVAAAERALSPKDL-AGK 189 (399)
T ss_pred CCCEEEEeCC--ChhHcCCHHHHHHHHHHHHCCCEEECCC-CccccCCCcCCC--CCCCHHHHHHHHHHHhhhccc-CCC
Confidence 4577888755 33344 455677888898888654 33 3333222 234677777777766643 3 445
Q ss_pred cEEEEEe
Q 024134 86 KVILVGH 92 (272)
Q Consensus 86 ~~~lvG~ 92 (272)
++.+-|-
T Consensus 190 ~vlITgG 196 (399)
T PRK05579 190 RVLITAG 196 (399)
T ss_pred EEEEeCC
Confidence 5666665
No 272
>cd07228 Pat_NTE_like_bacteria Bacterial patatin-like phospholipase domain containing protein 6. Bacterial patatin-like phospholipase domain containing protein 6. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This group includes YCHK and rssA from Escherichia coli as well as Ylbk from Bacillus amyloliquefaciens.
Probab=75.07 E-value=5.1 Score=28.03 Aligned_cols=31 Identities=32% Similarity=0.243 Sum_probs=23.5
Q ss_pred HHHHHhcCCCcEEEEEeCcchHHHHHHHhhCc
Q 024134 76 EILASLSADEKVILVGHSFGGLSVALAADKFP 107 (272)
Q Consensus 76 ~~i~~l~~~~~~~lvG~S~Gg~~a~~~a~~~p 107 (272)
+.+++. +...-.++|-|.|+.++..++...+
T Consensus 20 ~~L~e~-g~~~d~i~GtSaGAi~aa~~a~g~~ 50 (175)
T cd07228 20 RALEEE-GIEIDIIAGSSIGALVGALYAAGHL 50 (175)
T ss_pred HHHHHC-CCCeeEEEEeCHHHHHHHHHHcCCC
Confidence 334444 5567789999999999999987654
No 273
>TIGR03712 acc_sec_asp2 accessory Sec system protein Asp2. This protein is designated Asp2 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=74.96 E-value=48 Score=27.63 Aligned_cols=97 Identities=21% Similarity=0.109 Sum_probs=57.1
Q ss_pred CCCeEEEEecCCCcchhHH--hhHHHHHhCCCe-EEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhc-CCCcEEEE
Q 024134 15 KQKHFVLVHGSNHGAWCWY--KVKPRLEAAGHR-VTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLS-ADEKVILV 90 (272)
Q Consensus 15 ~~~~vv~lhG~~~~~~~~~--~~~~~l~~~g~~-v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~-~~~~~~lv 90 (272)
..|..|...|+-. .+-|+ .+++.| |.. .+.-|.|=-|.+-.-..+.+ =+...+-|.+.++.|+ .....+|-
T Consensus 288 KPPL~VYFSGyR~-aEGFEgy~MMk~L---g~PfLL~~DpRleGGaFYlGs~ey-E~~I~~~I~~~L~~LgF~~~qLILS 362 (511)
T TIGR03712 288 KPPLNVYFSGYRP-AEGFEGYFMMKRL---GAPFLLIGDPRLEGGAFYLGSDEY-EQGIINVIQEKLDYLGFDHDQLILS 362 (511)
T ss_pred CCCeEEeeccCcc-cCcchhHHHHHhc---CCCeEEeeccccccceeeeCcHHH-HHHHHHHHHHHHHHhCCCHHHeeec
Confidence 3456788888754 33343 234444 344 44457887776633221111 1233445666677772 34569999
Q ss_pred EeCcchHHHHHHHhhCccceeeeeeeec
Q 024134 91 GHSFGGLSVALAADKFPHKISVAIFLTA 118 (272)
Q Consensus 91 G~S~Gg~~a~~~a~~~p~~v~~lvl~~~ 118 (272)
|-|||..-|+.+++... -.++|+--|
T Consensus 363 GlSMGTfgAlYYga~l~--P~AIiVgKP 388 (511)
T TIGR03712 363 GLSMGTFGALYYGAKLS--PHAIIVGKP 388 (511)
T ss_pred cccccchhhhhhcccCC--CceEEEcCc
Confidence 99999999999998753 234444333
No 274
>PF10081 Abhydrolase_9: Alpha/beta-hydrolase family; InterPro: IPR012037 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=74.21 E-value=6.3 Score=29.86 Aligned_cols=54 Identities=19% Similarity=0.238 Sum_probs=35.0
Q ss_pred hhchHHHHHHHHHhc--CCCcEEEEEeCcchHHHHHHH---hhCccceeeeeeeeccCC
Q 024134 68 YEYNEPLLEILASLS--ADEKVILVGHSFGGLSVALAA---DKFPHKISVAIFLTAFMP 121 (272)
Q Consensus 68 ~~~~~~~~~~i~~l~--~~~~~~lvG~S~Gg~~a~~~a---~~~p~~v~~lvl~~~~~~ 121 (272)
..+.+.+.+-++.+. .-.+++|.|-|+|+.-+...- ...-+++++.++.+|+..
T Consensus 90 ~aL~~aV~~~~~~lP~~~RPkL~l~GeSLGa~g~~~af~~~~~~~~~vdGalw~GpP~~ 148 (289)
T PF10081_consen 90 RALFEAVYARWSTLPEDRRPKLYLYGESLGAYGGEAAFDGLDDLRDRVDGALWVGPPFF 148 (289)
T ss_pred HHHHHHHHHHHHhCCcccCCeEEEeccCccccchhhhhccHHHhhhhcceEEEeCCCCC
Confidence 344444555555552 235699999999998655543 233357999999988643
No 275
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=73.98 E-value=20 Score=26.08 Aligned_cols=85 Identities=15% Similarity=0.094 Sum_probs=48.7
Q ss_pred cCCCeEEEEecCCCcchh-HHhhHHHHHhC-CCeEEEEcCCCCCCCCccc-----c----cccchhhchH-----HHHHH
Q 024134 14 KKQKHFVLVHGSNHGAWC-WYKVKPRLEAA-GHRVTAMDLAASGINMKKI-----Q----DVRSFYEYNE-----PLLEI 77 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~-~~~~~~~l~~~-g~~v~~~d~~G~G~s~~~~-----~----~~~~~~~~~~-----~~~~~ 77 (272)
+..+.|++|+-....... ...+...|.+. |+.+..++... ...... + ..-+...+.+ .+.+.
T Consensus 29 ~~~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~~--~~~~~~~l~~ad~I~l~GG~~~~~~~~l~~~~l~~~ 106 (212)
T cd03146 29 KARPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLFD--TEDPLDALLEADVIYVGGGNTFNLLAQWREHGLDAI 106 (212)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEeccC--cccHHHHHhcCCEEEECCchHHHHHHHHHHcCHHHH
Confidence 456789999988775444 35566777777 89988887644 111000 0 0001111111 13344
Q ss_pred HHHhcCCCcEEEEEeCcchHHHHH
Q 024134 78 LASLSADEKVILVGHSFGGLSVAL 101 (272)
Q Consensus 78 i~~l~~~~~~~lvG~S~Gg~~a~~ 101 (272)
++.. -.+...++|.|.|+++...
T Consensus 107 l~~~-~~~g~~i~G~SAGa~i~~~ 129 (212)
T cd03146 107 LKAA-LERGVVYIGWSAGSNCWFP 129 (212)
T ss_pred HHHH-HHCCCEEEEECHhHHhhCC
Confidence 4433 2345789999999987655
No 276
>COG3673 Uncharacterized conserved protein [Function unknown]
Probab=73.68 E-value=37 Score=26.56 Aligned_cols=91 Identities=12% Similarity=0.058 Sum_probs=52.2
Q ss_pred CCCeEEEEecCCCc----c-hhHHhhHHHHHh-CCCeEEEEcCCCCCCCCcccc-------cccch-----hhchHHHHH
Q 024134 15 KQKHFVLVHGSNHG----A-WCWYKVKPRLEA-AGHRVTAMDLAASGINMKKIQ-------DVRSF-----YEYNEPLLE 76 (272)
Q Consensus 15 ~~~~vv~lhG~~~~----~-~~~~~~~~~l~~-~g~~v~~~d~~G~G~s~~~~~-------~~~~~-----~~~~~~~~~ 76 (272)
.+..|+|+-|.... . ..--.+...|.. .+.+++++=.+|.|.-.-... ..... ..+.+.|.+
T Consensus 30 ~k~lV~CfDGT~nrfg~qp~TNVv~Ly~sl~r~d~~~qv~yYd~GVGt~Gfdavvdvrrrl~~~~~gsmFg~gL~~nI~~ 109 (423)
T COG3673 30 MKRLVFCFDGTWNRFGAQPPTNVVLLYASLQRADGVTQVIYYDEGVGTGGFDAVVDVRRRLEKLSGGSMFGQGLVQNIRE 109 (423)
T ss_pred cceEEEEecCchhhcCCCCcchHHHHHHHHhcCCCceEEEEecCCcccccchhhHHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence 35578888775311 1 122345566654 678888888888886532110 00000 011222222
Q ss_pred ----HHHHhcCCCcEEEEEeCcchHHHHHHHhh
Q 024134 77 ----ILASLSADEKVILVGHSFGGLSVALAADK 105 (272)
Q Consensus 77 ----~i~~l~~~~~~~lvG~S~Gg~~a~~~a~~ 105 (272)
++.+......|++.|+|-|+..|--+|..
T Consensus 110 AYrFL~~~yepGD~Iy~FGFSRGAf~aRVlagm 142 (423)
T COG3673 110 AYRFLIFNYEPGDEIYAFGFSRGAFSARVLAGM 142 (423)
T ss_pred HHHHHHHhcCCCCeEEEeeccchhHHHHHHHHH
Confidence 22333467899999999999998888754
No 277
>COG1752 RssA Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=73.68 E-value=5.1 Score=31.06 Aligned_cols=33 Identities=24% Similarity=0.281 Sum_probs=25.9
Q ss_pred HHHHHHHhcCCCcEEEEEeCcchHHHHHHHhhCc
Q 024134 74 LLEILASLSADEKVILVGHSFGGLSVALAADKFP 107 (272)
Q Consensus 74 ~~~~i~~l~~~~~~~lvG~S~Gg~~a~~~a~~~p 107 (272)
+.+.+++. +..+-.+.|-|+|+.++..+|..+.
T Consensus 29 Vl~aL~e~-gi~~~~iaGtS~GAiva~l~A~g~~ 61 (306)
T COG1752 29 VLKALEEA-GIPIDVIAGTSAGAIVAALYAAGMD 61 (306)
T ss_pred HHHHHHHc-CCCccEEEecCHHHHHHHHHHcCCC
Confidence 44555555 6788899999999999999997543
No 278
>cd07209 Pat_hypo_Ecoli_Z1214_like Hypothetical patatin similar to Z1214 protein of Escherichia coli. Patatin-like phospholipase similar to Z1214 protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=73.66 E-value=5.7 Score=28.94 Aligned_cols=33 Identities=36% Similarity=0.418 Sum_probs=25.4
Q ss_pred HHHHHHHhcCCCcEEEEEeCcchHHHHHHHhhCc
Q 024134 74 LLEILASLSADEKVILVGHSFGGLSVALAADKFP 107 (272)
Q Consensus 74 ~~~~i~~l~~~~~~~lvG~S~Gg~~a~~~a~~~p 107 (272)
+.+.+++. +...-.+.|.|.|+.++..+|...+
T Consensus 16 vl~aL~e~-g~~~d~i~GtS~GAl~aa~~a~~~~ 48 (215)
T cd07209 16 VLKALAEA-GIEPDIISGTSIGAINGALIAGGDP 48 (215)
T ss_pred HHHHHHHc-CCCCCEEEEECHHHHHHHHHHcCCc
Confidence 33444555 6677789999999999999998764
No 279
>TIGR00128 fabD malonyl CoA-acyl carrier protein transacylase. The seed alignment for this family of proteins contains a single member each from a number of bacterial species but also an additional pair of closely related, uncharacterized proteins from B. subtilis, one of which has a long C-terminal extension.
Probab=71.49 E-value=5.1 Score=30.65 Aligned_cols=30 Identities=27% Similarity=0.262 Sum_probs=22.5
Q ss_pred HHHHHhcC-CCcEEEEEeCcchHHHHHHHhhC
Q 024134 76 EILASLSA-DEKVILVGHSFGGLSVALAADKF 106 (272)
Q Consensus 76 ~~i~~l~~-~~~~~lvG~S~Gg~~a~~~a~~~ 106 (272)
+.++.. + ..+..++|||+|=..|+.++...
T Consensus 74 ~~l~~~-g~i~p~~v~GhS~GE~aAa~~aG~l 104 (290)
T TIGR00128 74 LKLKEQ-GGLKPDFAAGHSLGEYSALVAAGAL 104 (290)
T ss_pred HHHHHc-CCCCCCEEeecCHHHHHHHHHhCCC
Confidence 344444 5 88999999999998887776543
No 280
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=71.03 E-value=19 Score=27.10 Aligned_cols=39 Identities=10% Similarity=0.136 Sum_probs=26.3
Q ss_pred cCCCeEEEEecCCCcchh-HHhhHHHHHhCCCe-EEEEcCC
Q 024134 14 KKQKHFVLVHGSNHGAWC-WYKVKPRLEAAGHR-VTAMDLA 52 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~-~~~~~~~l~~~g~~-v~~~d~~ 52 (272)
+..+.|++++-.+..... .+.+.+.|.+.|+. |..++.+
T Consensus 26 ~~~~rI~~iptAS~~~~~~~~~~~~~~~~lG~~~v~~l~i~ 66 (250)
T TIGR02069 26 GEDAIIVIITSASEEPREVGERYITIFSRLGVKEVKILDVR 66 (250)
T ss_pred CCCceEEEEeCCCCChHHHHHHHHHHHHHcCCceeEEEecC
Confidence 456789999977655433 45566777777874 5666664
No 281
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=70.85 E-value=14 Score=23.66 Aligned_cols=37 Identities=19% Similarity=0.259 Sum_probs=27.0
Q ss_pred EEEEecCCCcchhHHhhHHHHHhC-CCeEEEEcC--CCCCCC
Q 024134 19 FVLVHGSNHGAWCWYKVKPRLEAA-GHRVTAMDL--AASGIN 57 (272)
Q Consensus 19 vv~lhG~~~~~~~~~~~~~~l~~~-g~~v~~~d~--~G~G~s 57 (272)
+|+|.|.++++.+. ++..|+++ |+.++..|- +-.+..
T Consensus 1 vI~I~G~~gsGKST--~a~~La~~~~~~~i~~d~~~~~~~~~ 40 (121)
T PF13207_consen 1 VIIISGPPGSGKST--LAKELAERLGFPVISMDDLIREPGWI 40 (121)
T ss_dssp EEEEEESTTSSHHH--HHHHHHHHHTCEEEEEHHHHCCGTHC
T ss_pred CEEEECCCCCCHHH--HHHHHHHHHCCeEEEecceEEecccc
Confidence 68899998888764 56666665 899998887 444444
No 282
>cd07205 Pat_PNPLA6_PNPLA7_NTE1_like Patatin-like phospholipase domain containing protein 6, protein 7, and fungal NTE1. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are included in this family. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologus to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and panc
Probab=70.83 E-value=8.4 Score=26.90 Aligned_cols=31 Identities=29% Similarity=0.276 Sum_probs=23.0
Q ss_pred HHHHHHhcCCCcEEEEEeCcchHHHHHHHhhC
Q 024134 75 LEILASLSADEKVILVGHSFGGLSVALAADKF 106 (272)
Q Consensus 75 ~~~i~~l~~~~~~~lvG~S~Gg~~a~~~a~~~ 106 (272)
.+.+++. +...-.++|-|.|+.++..++...
T Consensus 19 l~~L~~~-~~~~d~i~GtSaGal~a~~~a~g~ 49 (175)
T cd07205 19 LKALEEA-GIPIDIVSGTSAGAIVGALYAAGY 49 (175)
T ss_pred HHHHHHc-CCCeeEEEEECHHHHHHHHHHcCC
Confidence 3344444 556778999999999999998654
No 283
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=70.33 E-value=19 Score=26.12 Aligned_cols=57 Identities=23% Similarity=0.229 Sum_probs=35.4
Q ss_pred CCeEEEEecCCCcchh---HHhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHH
Q 024134 16 QKHFVLVHGSNHGAWC---WYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILAS 80 (272)
Q Consensus 16 ~~~vv~lhG~~~~~~~---~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~ 80 (272)
+.+|+++||-...--. .+...+.|.+.|.++-.-.++|.|.+- ..+..+++.+++++
T Consensus 155 ~~pi~~~hG~~D~vvp~~~~~~~~~~L~~~~~~v~~~~~~g~gH~i--------~~~~~~~~~~~l~~ 214 (216)
T PF02230_consen 155 KTPILIIHGDEDPVVPFEWAEKTAEFLKAAGANVEFHEYPGGGHEI--------SPEELRDLREFLEK 214 (216)
T ss_dssp TS-EEEEEETT-SSSTHHHHHHHHHHHHCTT-GEEEEEETT-SSS----------HHHHHHHHHHHHH
T ss_pred CCcEEEEecCCCCcccHHHHHHHHHHHHhcCCCEEEEEcCCCCCCC--------CHHHHHHHHHHHhh
Confidence 5689999998766533 356778888888888888888766542 23445556666654
No 284
>cd07230 Pat_TGL4-5_like Triacylglycerol lipase 4 and 5. TGL4 and TGL5 are triacylglycerol lipases that are involved in triacylglycerol mobilization and degradation; they are found in lipid particles. Tgl4 is a functional ortholog of mammalian adipose TG lipase (ATGL) and is phosphorylated and activated by cyclin-dependent kinase 1 (Cdk1/Cdc28). TGL4 is 30% homologus to TGL3, whereas TGL5 is 26% homologus to TGL3. This family includes TGL4 (STC1) and TGL5 (STC2) from Saccharomyces cerevisiae.
Probab=69.98 E-value=3.3 Score=33.68 Aligned_cols=37 Identities=22% Similarity=0.206 Sum_probs=27.0
Q ss_pred HHHHHHhcCCCcEEEEEeCcchHHHHHHHhhCccceee
Q 024134 75 LEILASLSADEKVILVGHSFGGLSVALAADKFPHKISV 112 (272)
Q Consensus 75 ~~~i~~l~~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~ 112 (272)
.+.+... +..+-++.|-|.|+.+|..++...++.+..
T Consensus 92 LkaL~E~-gl~p~vIsGTSaGAivAal~as~~~eel~~ 128 (421)
T cd07230 92 LKALFEA-NLLPRIISGSSAGSIVAAILCTHTDEEIPE 128 (421)
T ss_pred HHHHHHc-CCCCCEEEEECHHHHHHHHHHcCCHHHHHH
Confidence 3333333 667778999999999999999876655433
No 285
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=69.87 E-value=26 Score=22.46 Aligned_cols=74 Identities=22% Similarity=0.231 Sum_probs=48.9
Q ss_pred eEEEEecCCCcchhHHhhHHHHHhC-CCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcCCCcEEEEEeCcch
Q 024134 18 HFVLVHGSNHGAWCWYKVKPRLEAA-GHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSADEKVILVGHSFGG 96 (272)
Q Consensus 18 ~vv~lhG~~~~~~~~~~~~~~l~~~-g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~lvG~S~Gg 96 (272)
.||.-|| .-+......++.+... --.+.++++. + ..+.+++.+.+.+.++.....+.+.++.-=+||
T Consensus 2 iii~sHG--~~A~g~~~~~~~i~G~~~~~i~~~~~~--------~--~~~~~~~~~~l~~~i~~~~~~~~vlil~Dl~gg 69 (116)
T PF03610_consen 2 IIIASHG--SLAEGLLESAEMILGEDQDNIEAVDLY--------P--DESIEDFEEKLEEAIEELDEGDGVLILTDLGGG 69 (116)
T ss_dssp EEEEEET--THHHHHHHHHHHHHTSTCSSEEEEEET--------T--TSCHHHHHHHHHHHHHHCCTTSEEEEEESSTTS
T ss_pred EEEEECc--HHHHHHHHHHHHHcCCCcccEEEEECc--------C--CCCHHHHHHHHHHHHHhccCCCcEEEEeeCCCC
Confidence 4788898 4455556666666644 3467777754 1 148888999999999888445667777666666
Q ss_pred HHHHHHH
Q 024134 97 LSVALAA 103 (272)
Q Consensus 97 ~~a~~~a 103 (272)
...-.++
T Consensus 70 sp~n~a~ 76 (116)
T PF03610_consen 70 SPFNEAA 76 (116)
T ss_dssp HHHHHHH
T ss_pred ccchHHH
Confidence 5444433
No 286
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=69.66 E-value=22 Score=27.12 Aligned_cols=82 Identities=16% Similarity=0.126 Sum_probs=47.8
Q ss_pred eEEEEecCCCcchh-HHhhHHHHHhCCC-------eEEEEcCCCCCCCCcccccccchhh--------chHHHHHHHHHh
Q 024134 18 HFVLVHGSNHGAWC-WYKVKPRLEAAGH-------RVTAMDLAASGINMKKIQDVRSFYE--------YNEPLLEILASL 81 (272)
Q Consensus 18 ~vv~lhG~~~~~~~-~~~~~~~l~~~g~-------~v~~~d~~G~G~s~~~~~~~~~~~~--------~~~~~~~~i~~l 81 (272)
.-|++.|.|...-- -+.+...+.+.|. +++.+|..|-=..+...-. ..... ...++.++++.+
T Consensus 26 ~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~-~~~~~~a~~~~~~~~~~L~e~i~~v 104 (279)
T cd05312 26 QRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLT-PFKKPFARKDEEKEGKSLLEVVKAV 104 (279)
T ss_pred cEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcch-HHHHHHHhhcCcccCCCHHHHHHhc
Confidence 44566677655543 4455666666677 8999999884322221100 01111 123567777755
Q ss_pred cCCCcEEEEEeCc-chHHHHHHH
Q 024134 82 SADEKVILVGHSF-GGLSVALAA 103 (272)
Q Consensus 82 ~~~~~~~lvG~S~-Gg~~a~~~a 103 (272)
++-+++|-|- ||.+.-...
T Consensus 105 ---~ptvlIG~S~~~g~ft~evv 124 (279)
T cd05312 105 ---KPTVLIGLSGVGGAFTEEVV 124 (279)
T ss_pred ---CCCEEEEeCCCCCCCCHHHH
Confidence 8899999994 776554444
No 287
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=69.45 E-value=22 Score=30.93 Aligned_cols=64 Identities=13% Similarity=0.193 Sum_probs=40.3
Q ss_pred cCCCeEEEEecCCCcch---hHHhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHH
Q 024134 14 KKQKHFVLVHGSNHGAW---CWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILAS 80 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~---~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~ 80 (272)
.-+.++++|||.....- .-..+...|...|..|-..-+|+-|.+-..+ ....+....+.++++.
T Consensus 549 ~i~~P~LliHG~~D~~v~~~q~~~~~~aL~~~g~~~~~~~~p~e~H~~~~~---~~~~~~~~~~~~~~~~ 615 (620)
T COG1506 549 NIKTPLLLIHGEEDDRVPIEQAEQLVDALKRKGKPVELVVFPDEGHGFSRP---ENRVKVLKEILDWFKR 615 (620)
T ss_pred ccCCCEEEEeecCCccCChHHHHHHHHHHHHcCceEEEEEeCCCCcCCCCc---hhHHHHHHHHHHHHHH
Confidence 34679999999875443 3456778888888888777777655543322 2334444445555543
No 288
>COG3933 Transcriptional antiterminator [Transcription]
Probab=68.84 E-value=36 Score=27.85 Aligned_cols=73 Identities=22% Similarity=0.190 Sum_probs=53.1
Q ss_pred CeEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcCCCcEEEEEeCcch
Q 024134 17 KHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSADEKVILVGHSFGG 96 (272)
Q Consensus 17 ~~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~lvG~S~Gg 96 (272)
..||+.||....+. ...++..|-.. --+.++|+| . ..+..+..+.+.+-+++. +..+=.++=..||.
T Consensus 110 ~vIiiAHG~sTASS-maevanrLL~~-~~~~aiDMP--------L--dvsp~~vle~l~e~~k~~-~~~~GlllLVDMGS 176 (470)
T COG3933 110 KVIIIAHGYSTASS-MAEVANRLLGE-EIFIAIDMP--------L--DVSPSDVLEKLKEYLKER-DYRSGLLLLVDMGS 176 (470)
T ss_pred eEEEEecCcchHHH-HHHHHHHHhhc-cceeeecCC--------C--cCCHHHHHHHHHHHHHhc-CccCceEEEEecch
Confidence 47899999765444 45666666555 478999997 2 258889999999999988 66665566669998
Q ss_pred HHHHHH
Q 024134 97 LSVALA 102 (272)
Q Consensus 97 ~~a~~~ 102 (272)
.....=
T Consensus 177 L~~f~~ 182 (470)
T COG3933 177 LTSFGS 182 (470)
T ss_pred HHHHHH
Confidence 755443
No 289
>PF14253 AbiH: Bacteriophage abortive infection AbiH
Probab=68.29 E-value=5.7 Score=30.07 Aligned_cols=22 Identities=36% Similarity=0.676 Sum_probs=16.2
Q ss_pred HHHHHhcCCCcEEEEEeCcchH
Q 024134 76 EILASLSADEKVILVGHSFGGL 97 (272)
Q Consensus 76 ~~i~~l~~~~~~~lvG~S~Gg~ 97 (272)
.+++.+.....++++|||+|..
T Consensus 226 ~~~~~l~~i~~I~i~GhSl~~~ 247 (270)
T PF14253_consen 226 SFFESLSDIDEIIIYGHSLGEV 247 (270)
T ss_pred HHHhhhcCCCEEEEEeCCCchh
Confidence 3444444668899999999975
No 290
>COG3727 Vsr DNA G:T-mismatch repair endonuclease [DNA replication, recombination, and repair]
Probab=68.23 E-value=16 Score=24.06 Aligned_cols=15 Identities=33% Similarity=0.395 Sum_probs=11.4
Q ss_pred hHHHHHhCCCeEEEE
Q 024134 35 VKPRLEAAGHRVTAM 49 (272)
Q Consensus 35 ~~~~l~~~g~~v~~~ 49 (272)
.+..|.+.|++|+++
T Consensus 100 ~~~~L~~~GwrvlvV 114 (150)
T COG3727 100 DIKRLQQLGWRVLVV 114 (150)
T ss_pred HHHHHHHcCCeEEEE
Confidence 456787889998775
No 291
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=67.75 E-value=24 Score=26.92 Aligned_cols=38 Identities=18% Similarity=0.233 Sum_probs=24.1
Q ss_pred eEEEEecCCCcchh--HHhhHHHHHhCCCeEEEEcCCCCC
Q 024134 18 HFVLVHGSNHGAWC--WYKVKPRLEAAGHRVTAMDLAASG 55 (272)
Q Consensus 18 ~vv~lhG~~~~~~~--~~~~~~~l~~~g~~v~~~d~~G~G 55 (272)
++|++-|+++++.. ...+...|.+.++.|+.++--..+
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~ 41 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG 41 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc
Confidence 68899999999876 356778888788999888754433
No 292
>PRK07667 uridine kinase; Provisional
Probab=67.09 E-value=30 Score=24.67 Aligned_cols=53 Identities=11% Similarity=0.181 Sum_probs=34.9
Q ss_pred hhhHHhhhhhhccCCCeEEEEecCCCcchhH--HhhHHHHHhCCCeEEEEcCCCC
Q 024134 2 ELTEKVKKMTEAKKQKHFVLVHGSNHGAWCW--YKVKPRLEAAGHRVTAMDLAAS 54 (272)
Q Consensus 2 ~~~~~~~~~~~~~~~~~vv~lhG~~~~~~~~--~~~~~~l~~~g~~v~~~d~~G~ 54 (272)
.+.+.............||.|-|.++++... ..+...|.+.|..+..+++..+
T Consensus 2 ~~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~ 56 (193)
T PRK07667 2 STNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDY 56 (193)
T ss_pred CHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcc
Confidence 3334443333334556899999998888663 5566777777888777776654
No 293
>cd07232 Pat_PLPL Patain-like phospholipase. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants and fungi. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have been found also in vertebrates.
Probab=67.03 E-value=4.2 Score=32.95 Aligned_cols=38 Identities=18% Similarity=0.177 Sum_probs=28.1
Q ss_pred HHHHHHhcCCCcEEEEEeCcchHHHHHHHhhCccceeee
Q 024134 75 LEILASLSADEKVILVGHSFGGLSVALAADKFPHKISVA 113 (272)
Q Consensus 75 ~~~i~~l~~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~l 113 (272)
...+... +..+-++.|.|.|+.+|..++...++.+..+
T Consensus 86 lkaL~e~-gllp~iI~GtSAGAivaalla~~t~~el~~~ 123 (407)
T cd07232 86 VKALLDA-DLLPNVISGTSGGSLVAALLCTRTDEELKQL 123 (407)
T ss_pred HHHHHhC-CCCCCEEEEECHHHHHHHHHHcCCHHHHHHH
Confidence 3333334 6677889999999999999998766665544
No 294
>COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only]
Probab=66.67 E-value=0.37 Score=36.64 Aligned_cols=91 Identities=25% Similarity=0.126 Sum_probs=56.7
Q ss_pred cCCCeEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCCCCCCC----------Cccccccc-------chhhchHHHHH
Q 024134 14 KKQKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGIN----------MKKIQDVR-------SFYEYNEPLLE 76 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s----------~~~~~~~~-------~~~~~~~~~~~ 76 (272)
..-|.+++.||++.....-......++..++.++..+...+|.+ ........ ...-+..+...
T Consensus 47 ~~~p~v~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (299)
T COG1073 47 KKLPAVVFLHGFGSSKEQSLGYAVLLAEKGYRVLAGDASLFGESGGDPRGLADSEGYAEDFSAAVLLLLSEGVLDKDYRL 126 (299)
T ss_pred ccCceEEeccCccccccCcchHHHHhhhceeEEeeeccccccccccccccccCccccccccchhheeeeccccccHHHHH
Confidence 35789999999999988866678888888899888765333322 21111000 00111111111
Q ss_pred HHHHhcCCCcEEEEEeCcchHHHHHHHhhCc
Q 024134 77 ILASLSADEKVILVGHSFGGLSVALAADKFP 107 (272)
Q Consensus 77 ~i~~l~~~~~~~lvG~S~Gg~~a~~~a~~~p 107 (272)
... ...+....|+++|+..+..++...+
T Consensus 127 ~~~---~~~~~~~~g~~~~~~~~~~~~~~~~ 154 (299)
T COG1073 127 LGA---SLGPRILAGLSLGGPSAGALLAWGP 154 (299)
T ss_pred Hhh---hcCcceEEEEEeeccchHHHhhcch
Confidence 111 3378888999999998888887776
No 295
>cd07208 Pat_hypo_Ecoli_yjju_like Hypothetical patatin similar to yjju protein of Escherichia coli. Patatin-like phospholipase similar to yjju protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins, and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=66.41 E-value=10 Score=28.69 Aligned_cols=33 Identities=15% Similarity=0.113 Sum_probs=23.7
Q ss_pred HHHHHhcCCC-cEEEEEeCcchHHHHHHHhhCccc
Q 024134 76 EILASLSADE-KVILVGHSFGGLSVALAADKFPHK 109 (272)
Q Consensus 76 ~~i~~l~~~~-~~~lvG~S~Gg~~a~~~a~~~p~~ 109 (272)
+.+.+. +.. .-.++|.|.|+.++..++...+.+
T Consensus 18 ~al~e~-~~~~fd~i~GtSaGAi~a~~~~~g~~~~ 51 (266)
T cd07208 18 DAFLEA-GIRPFDLVIGVSAGALNAASYLSGQRGR 51 (266)
T ss_pred HHHHHc-CCCCCCEEEEECHHHHhHHHHHhCCcch
Confidence 333333 445 558999999999999998876543
No 296
>PF05576 Peptidase_S37: PS-10 peptidase S37; InterPro: IPR008761 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. These group of serine peptidases belong to MEROPS peptidase family S37 (clan SC). The members of this group of secreted peptidases are restricted to bacteria. In Streptomyces lividans the peptidase removes tripeptides from the N terminus of extracellular proteins (tripeptidyl aminopeptidase,Tap) [, ].
Probab=66.27 E-value=10 Score=30.57 Aligned_cols=55 Identities=16% Similarity=0.210 Sum_probs=34.9
Q ss_pred CceeEEEEeCCCCCccHHHHHHHHhcCCCceEEEecCCCcccccCC-C----chHHHHHHHH
Q 024134 211 SVKRDFVGSDKDNCIPKEFQQWMIQNNPVNEVMAIKGADHMAMLSK-P----QPLSDCFSQI 267 (272)
Q Consensus 211 ~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~-p----~~~~~~i~~f 267 (272)
.-.+|+|+|++|++.-... .+-+...+..+.+.||++|..-+.. | ++....|.+|
T Consensus 351 ~~rmlFVYG~nDPW~A~~f--~l~~g~~ds~v~~~PggnHga~I~~L~~~~r~~a~a~l~~W 410 (448)
T PF05576_consen 351 GPRMLFVYGENDPWSAEPF--RLGKGKRDSYVFTAPGGNHGARIAGLPEAERAEATARLRRW 410 (448)
T ss_pred CCeEEEEeCCCCCcccCcc--ccCCCCcceEEEEcCCCcccccccCCCHHHHHHHHHHHHHH
Confidence 4578999999998864322 1122234678888899999876543 2 3344455555
No 297
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=65.93 E-value=13 Score=25.63 Aligned_cols=73 Identities=18% Similarity=0.161 Sum_probs=46.1
Q ss_pred EEEecCCCcchhHHhhHHHHHhCCCeEEEEcCCCCCCCCccc-----ccccchhhchHHHHHHHHHhcCCCcEEEEEeCc
Q 024134 20 VLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKI-----QDVRSFYEYNEPLLEILASLSADEKVILVGHSF 94 (272)
Q Consensus 20 v~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~-----~~~~~~~~~~~~~~~~i~~l~~~~~~~lvG~S~ 94 (272)
|++-|.|++...-.+++..|..+ |+.-.+-+|.--.|.... ...|.++.. ....++.+ +..--+++|.|-
T Consensus 44 vl~cGNGgSaadAqHfaael~gR-f~~eR~~lpaIaLt~dsS~lTai~NDy~yd~v---FsRqveA~-g~~GDvLigIST 118 (176)
T COG0279 44 VLACGNGGSAADAQHFAAELTGR-FEKERPSLPAIALSTDSSVLTAIANDYGYDEV---FSRQVEAL-GQPGDVLIGIST 118 (176)
T ss_pred EEEECCCcchhhHHHHHHHHhhH-HHhcCCCCCeeEeecccHHHhhhhccccHHHH---HHHHHHhc-CCCCCEEEEEeC
Confidence 44558888888888888888755 665555555544442211 122444433 34666777 667778999998
Q ss_pred chH
Q 024134 95 GGL 97 (272)
Q Consensus 95 Gg~ 97 (272)
.|.
T Consensus 119 SGN 121 (176)
T COG0279 119 SGN 121 (176)
T ss_pred CCC
Confidence 885
No 298
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=65.78 E-value=42 Score=26.57 Aligned_cols=34 Identities=15% Similarity=0.132 Sum_probs=24.2
Q ss_pred EEEecCCCcchhHHhhHHHHHhCCCeEEEEcCCC
Q 024134 20 VLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAA 53 (272)
Q Consensus 20 v~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G 53 (272)
+...|.|++-..+..+++.|.++|+.|..+-..+
T Consensus 6 i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~ 39 (357)
T PRK00726 6 LAGGGTGGHVFPALALAEELKKRGWEVLYLGTAR 39 (357)
T ss_pred EEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCC
Confidence 3335566666656789999998999988875543
No 299
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=65.00 E-value=19 Score=27.47 Aligned_cols=85 Identities=15% Similarity=0.032 Sum_probs=41.5
Q ss_pred HHHHHhCCCeEEEE------cCCCCCCCCcccccccchhhchHHHHHHHHHh--cCCCcEEEEEeCcchH----HHHHHH
Q 024134 36 KPRLEAAGHRVTAM------DLAASGINMKKIQDVRSFYEYNEPLLEILASL--SADEKVILVGHSFGGL----SVALAA 103 (272)
Q Consensus 36 ~~~l~~~g~~v~~~------d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l--~~~~~~~lvG~S~Gg~----~a~~~a 103 (272)
...|+..|++|+++ ..+|||...+.. ...+..+++.+-++.. ...-..++-|+=-.+. ++-.+.
T Consensus 21 ~f~lq~~G~~V~~vpTV~fSnHtgyg~~~g~v----~~~e~l~~~l~~l~~~~~~~~~davltGYlgs~~qv~~i~~~v~ 96 (281)
T COG2240 21 IFPLQRLGLDVWAVPTVQFSNHTGYGKWTGIV----MPPEQLADLLNGLEAIDKLGECDAVLTGYLGSAEQVRAIAGIVK 96 (281)
T ss_pred HHHHHHcCCceeeeceEEecCCCCCCCCCCcC----CCHHHHHHHHHHHHhcccccccCEEEEccCCCHHHHHHHHHHHH
Confidence 34566678876654 688898865433 2223333333333321 1233566666532222 222222
Q ss_pred hhCccceeeeeeeeccCCCCC
Q 024134 104 DKFPHKISVAIFLTAFMPDTK 124 (272)
Q Consensus 104 ~~~p~~v~~lvl~~~~~~~~~ 124 (272)
+-..+.-+.+++++|.....+
T Consensus 97 ~vk~~~P~~~~l~DPVMGD~g 117 (281)
T COG2240 97 AVKEANPNALYLCDPVMGDPG 117 (281)
T ss_pred HHhccCCCeEEEeCCcccCCC
Confidence 111123346789999866554
No 300
>PRK14974 cell division protein FtsY; Provisional
Probab=64.94 E-value=68 Score=25.48 Aligned_cols=66 Identities=24% Similarity=0.257 Sum_probs=40.5
Q ss_pred hCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcCCCcEEEEEeCcchHHHHHHHhhCcc--ceeeeeee
Q 024134 41 AAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSADEKVILVGHSFGGLSVALAADKFPH--KISVAIFL 116 (272)
Q Consensus 41 ~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~lvG~S~Gg~~a~~~a~~~p~--~v~~lvl~ 116 (272)
..|+.++.+|-+|.... -.++.+.+..+.+.. ....+++|.-+.-|.-+...+..+.+ .+.++|+.
T Consensus 220 ~~~~DvVLIDTaGr~~~---------~~~lm~eL~~i~~~~-~pd~~iLVl~a~~g~d~~~~a~~f~~~~~~~giIlT 287 (336)
T PRK14974 220 ARGIDVVLIDTAGRMHT---------DANLMDELKKIVRVT-KPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILT 287 (336)
T ss_pred hCCCCEEEEECCCccCC---------cHHHHHHHHHHHHhh-CCceEEEeeccccchhHHHHHHHHHhcCCCCEEEEe
Confidence 45788999998875442 234455566666656 45566777766666666665554432 45666654
No 301
>PF03976 PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR022488 This presumed domain is found in one or two copies per protein. The domain is about 230 amino acids in length and has many conserved motifs, it has polyphosphate kinase activity [, ].; PDB: 3CZP_A 3RHF_D 3CZQ_B.
Probab=64.82 E-value=6.2 Score=29.09 Aligned_cols=71 Identities=17% Similarity=0.136 Sum_probs=42.3
Q ss_pred cCCCeEEEEecCCCcchh--HHhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhch-HHHHHHHHHhcCCCcEEEE
Q 024134 14 KKQKHFVLVHGSNHGAWC--WYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYN-EPLLEILASLSADEKVILV 90 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~--~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~-~~~~~~i~~l~~~~~~~lv 90 (272)
.+.|+||++.|+.+++.. -..+...|-.+|++|.++.-| +-++.. .-+-.+-.+++..+.+.+.
T Consensus 28 ~~~~vlIl~eG~d~sGKg~~I~~l~~~lDPR~~~v~~~~~p-------------t~eE~~~p~lwRfw~~lP~~G~I~if 94 (228)
T PF03976_consen 28 AGIPVLILFEGWDASGKGGTINRLIEWLDPRGFRVHAFGKP-------------TDEELRRPFLWRFWRALPARGQIGIF 94 (228)
T ss_dssp HHHEEEEEEEESTTSSHHHHHHHHHCCS-GGGEEEEE-SS---------------HHHHTS-TTHHHHTTS--TT-EEEE
T ss_pred cCCcEEEEEeccccCCchHHHHHHHHhCCCCeeEEEeCCCC-------------ChhHcCCCcHHHHHHhCCCCCEEEEE
Confidence 345799999999887754 566777777899999999865 222222 2244556666556777777
Q ss_pred EeCcchH
Q 024134 91 GHSFGGL 97 (272)
Q Consensus 91 G~S~Gg~ 97 (272)
=-|+=.-
T Consensus 95 ~rSWY~~ 101 (228)
T PF03976_consen 95 DRSWYED 101 (228)
T ss_dssp ES-GGGG
T ss_pred ecchhhH
Confidence 6665443
No 302
>COG0218 Predicted GTPase [General function prediction only]
Probab=64.16 E-value=11 Score=26.93 Aligned_cols=56 Identities=11% Similarity=0.068 Sum_probs=31.9
Q ss_pred CceeEEEEeCCCCCccHHHH---HHHHhcC---CCce--EEEecCCCcccccCCCchHHHHHHHHHHh
Q 024134 211 SVKRDFVGSDKDNCIPKEFQ---QWMIQNN---PVNE--VMAIKGADHMAMLSKPQPLSDCFSQIAHK 270 (272)
Q Consensus 211 ~~P~l~i~g~~D~~~~~~~~---~~~~~~~---~~~~--~~~~~~~gH~~~~~~p~~~~~~i~~fl~~ 270 (272)
.+|++++.-..|.+-..+.. ...++.+ +... ++.++-..... -+++.+.|.+++..
T Consensus 135 ~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~~~~~~ss~~k~G----i~~l~~~i~~~~~~ 198 (200)
T COG0218 135 GIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQWVVLFSSLKKKG----IDELKAKILEWLKE 198 (200)
T ss_pred CCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCccceEEEEecccccC----HHHHHHHHHHHhhc
Confidence 78999999999998765543 3333322 2222 44444222221 24666667766654
No 303
>PF10605 3HBOH: 3HB-oligomer hydrolase (3HBOH) ; InterPro: IPR016582 This entry represents a group of predicted D-(-)-3-hydroxybutyrate oligomer hydrolases (also known as 3HB-oligomer hydrolase), which function in the degradation of poly-3-hydroxybutyrate (PHB). These enzymes catalyse the hydrolysis of D(-)-3-hydroxybutyrate oligomers (3HB-oligomers) into 3HB-monomers [, ].; GO: 0047989 hydroxybutyrate-dimer hydrolase activity, 0019605 butyrate metabolic process, 0005615 extracellular space
Probab=63.59 E-value=5 Score=33.88 Aligned_cols=35 Identities=23% Similarity=0.113 Sum_probs=26.7
Q ss_pred EEEEEeCcchHHHHHHHhhCc-cceeeeeeeeccCC
Q 024134 87 VILVGHSFGGLSVALAADKFP-HKISVAIFLTAFMP 121 (272)
Q Consensus 87 ~~lvG~S~Gg~~a~~~a~~~p-~~v~~lvl~~~~~~ 121 (272)
++.-+.|=||..++..|.+.. ..|++++...|...
T Consensus 287 VIAssvSNGGgAal~AAEqD~~glIdgVvv~EP~v~ 322 (690)
T PF10605_consen 287 VIASSVSNGGGAALAAAEQDTQGLIDGVVVSEPNVN 322 (690)
T ss_pred EEEEeecCccHHHHhHhhcccCCceeeEEecCCccC
Confidence 455579999999999997654 46889888877643
No 304
>cd07231 Pat_SDP1-like Sugar-Dependent 1 like lipase. Sugar-Dependent 1 (SDP1) lipase has a patatin-like acyl-hydrolase domain that initiates the breakdown of storage oil in germinating Arabidopsis seeds. This acyl-hydrolase domain is homologus to yeast triacylglycerol lipase 3 and human adipose triglyceride lipase. This family includes SDP1 from Arabidopsis thaliana.
Probab=62.77 E-value=5.9 Score=30.74 Aligned_cols=33 Identities=18% Similarity=0.247 Sum_probs=24.2
Q ss_pred HHHHHhcCCCcEEEEEeCcchHHHHHHHhhCccc
Q 024134 76 EILASLSADEKVILVGHSFGGLSVALAADKFPHK 109 (272)
Q Consensus 76 ~~i~~l~~~~~~~lvG~S~Gg~~a~~~a~~~p~~ 109 (272)
+.+... +..+-++.|-|.|+.+|..++...++.
T Consensus 88 kaL~e~-gl~p~~i~GsSaGAivaa~~~~~t~~E 120 (323)
T cd07231 88 RTLVEH-QLLPRVIAGSSVGSIVCAIIATRTDEE 120 (323)
T ss_pred HHHHHc-CCCCCEEEEECHHHHHHHHHHcCCHHH
Confidence 333334 667778999999999999998754433
No 305
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=62.23 E-value=66 Score=25.05 Aligned_cols=75 Identities=13% Similarity=0.140 Sum_probs=47.4
Q ss_pred CeEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcC----CCCC--CCCc----------------ccccccchhhchHHH
Q 024134 17 KHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDL----AASG--INMK----------------KIQDVRSFYEYNEPL 74 (272)
Q Consensus 17 ~~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~----~G~G--~s~~----------------~~~~~~~~~~~~~~~ 74 (272)
+.||+|-|-.+++.. .++-.|++++-.+|..|- +|.. ...+ .+...++..++.++.
T Consensus 4 ~~ii~I~GpTasGKS--~LAl~LA~~~~eIIsaDS~QvYr~ldIgTaKpt~eE~~~i~Hhlid~~~p~e~~sv~~f~~~a 81 (300)
T PRK14729 4 NKIVFIFGPTAVGKS--NILFHFPKGKAEIINVDSIQVYKEFDIASCKPSKELRKHIKHHLVDFLEPIKEYNLGIFYKEA 81 (300)
T ss_pred CcEEEEECCCccCHH--HHHHHHHHhCCcEEeccHHHHHCCCceecCCCCHHHHcCCCeeeeeccCCCCceeHHHHHHHH
Confidence 458888888777765 345556655558888884 3322 1111 122457889999999
Q ss_pred HHHHHHh-cCCCcEEEEEeC
Q 024134 75 LEILASL-SADEKVILVGHS 93 (272)
Q Consensus 75 ~~~i~~l-~~~~~~~lvG~S 93 (272)
.+.|+.+ ...+..+++|-|
T Consensus 82 ~~~i~~i~~~gk~PilvGGT 101 (300)
T PRK14729 82 LKIIKELRQQKKIPIFVGGS 101 (300)
T ss_pred HHHHHHHHHCCCCEEEEeCc
Confidence 9999876 234456777644
No 306
>cd07212 Pat_PNPLA9 Patatin-like phospholipase domain containing protein 9. PNPLA9 is a Ca-independent phospholipase that catalyzes the hydrolysis of glycerophospholipids at the sn-2 position. PNPLA9 is also known as PLA2G6 (phospholipase A2 group VI) or iPLA2beta. PLA2G6 is stimulated by ATP and inhibited by bromoenol lactone (BEL). In humans, PNPLA9 in expressed ubiquitously and is involved in signal transduction, cell proliferation, and apoptotic cell death. Mutations in human PLA2G6 leads to infantile neuroaxonal dystrophy (INAD) and idiopathic neurodegeneration with brain iron accumulation (NBIA). This family includes PLA2G6 from Homo sapiens and Rattus norvegicus.
Probab=61.84 E-value=16 Score=28.44 Aligned_cols=21 Identities=19% Similarity=0.162 Sum_probs=17.4
Q ss_pred EEEEEeCcchHHHHHHHhhCc
Q 024134 87 VILVGHSFGGLSVALAADKFP 107 (272)
Q Consensus 87 ~~lvG~S~Gg~~a~~~a~~~p 107 (272)
-.+.|.|.||.+|..++..++
T Consensus 34 D~i~GTStGgiIA~~la~g~s 54 (312)
T cd07212 34 DWIAGTSTGGILALALLHGKS 54 (312)
T ss_pred cEEEeeChHHHHHHHHHcCCC
Confidence 357899999999999997543
No 307
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=61.46 E-value=51 Score=22.71 Aligned_cols=81 Identities=17% Similarity=0.158 Sum_probs=47.4
Q ss_pred cCCCeEEEEecCCCcchhHHhhHHHHHhCCC-eEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcCCCcEEEEEe
Q 024134 14 KKQKHFVLVHGSNHGAWCWYKVKPRLEAAGH-RVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSADEKVILVGH 92 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~~~~~~~~l~~~g~-~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~lvG~ 92 (272)
.+.+..+++=| . ....-..+...|+..|. +|+.++.+... .++.+.+++.+.+++++. + ..++++|+
T Consensus 31 ~g~~v~av~~G-~-~~~~~~~l~~~l~~~G~d~v~~~~~~~~~--------~~~~~~~a~~l~~~~~~~-~-~~lVl~~~ 98 (164)
T PF01012_consen 31 LGGEVTAVVLG-P-AEEAAEALRKALAKYGADKVYHIDDPALA--------EYDPEAYADALAELIKEE-G-PDLVLFGS 98 (164)
T ss_dssp TTSEEEEEEEE-T-CCCHHHHHHHHHHSTTESEEEEEE-GGGT--------TC-HHHHHHHHHHHHHHH-T--SEEEEES
T ss_pred cCCeEEEEEEe-c-chhhHHHHhhhhhhcCCcEEEEecCcccc--------ccCHHHHHHHHHHHHHhc-C-CCEEEEcC
Confidence 33455555555 2 12222233445655676 68888755322 257788899999999986 3 45888887
Q ss_pred Cc-chHHHHHHHhhC
Q 024134 93 SF-GGLSVALAADKF 106 (272)
Q Consensus 93 S~-Gg~~a~~~a~~~ 106 (272)
|. |.-++-.+|.+.
T Consensus 99 t~~g~~la~~lA~~L 113 (164)
T PF01012_consen 99 TSFGRDLAPRLAARL 113 (164)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHh
Confidence 64 445777776653
No 308
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=61.43 E-value=6.7 Score=31.50 Aligned_cols=37 Identities=19% Similarity=0.082 Sum_probs=27.2
Q ss_pred HHHHHhcCCCcEEEEEeCcchHHHHHHHhhCccceeee
Q 024134 76 EILASLSADEKVILVGHSFGGLSVALAADKFPHKISVA 113 (272)
Q Consensus 76 ~~i~~l~~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~l 113 (272)
..+... +..+-++.|-|.|+.+|..+|...++.+..+
T Consensus 103 kaL~e~-gl~p~~i~GtS~Gaivaa~~a~~~~~e~~~~ 139 (391)
T cd07229 103 KALWLR-GLLPRIITGTATGALIAALVGVHTDEELLRF 139 (391)
T ss_pred HHHHHc-CCCCceEEEecHHHHHHHHHHcCCHHHHHHH
Confidence 334444 7778889999999999999998655544443
No 309
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=61.32 E-value=41 Score=24.74 Aligned_cols=51 Identities=8% Similarity=-0.035 Sum_probs=38.4
Q ss_pred HhhhhhhccCCCeEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCCCCCC
Q 024134 6 KVKKMTEAKKQKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGI 56 (272)
Q Consensus 6 ~~~~~~~~~~~~~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~ 56 (272)
...||..-+..+.+.....+.++......-+..|.++|..++..|.-||..
T Consensus 141 ~~~kW~~l~~~~~~a~asPy~~~~~~l~~Aa~~L~~~gadlIvLDCmGYt~ 191 (221)
T PF07302_consen 141 QAEKWQPLGNPVVVAAASPYEGDEEELAAAARELAEQGADLIVLDCMGYTQ 191 (221)
T ss_pred HHHHHHhcCCCeEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCH
Confidence 556777666666666665555667778888899999999999999987653
No 310
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=60.99 E-value=78 Score=24.75 Aligned_cols=35 Identities=17% Similarity=0.288 Sum_probs=23.6
Q ss_pred EEEEecC--CCcchhHHhhHHHHHhCCCeEEEEcCCC
Q 024134 19 FVLVHGS--NHGAWCWYKVKPRLEAAGHRVTAMDLAA 53 (272)
Q Consensus 19 vv~lhG~--~~~~~~~~~~~~~l~~~g~~v~~~d~~G 53 (272)
+++++|. |+.......+++.|.++|++|..+...+
T Consensus 3 l~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~ 39 (360)
T cd04951 3 LYVITGLGLGGAEKQVVDLADQFVAKGHQVAIISLTG 39 (360)
T ss_pred EEEecCCCCCCHHHHHHHHHHhcccCCceEEEEEEeC
Confidence 4445554 3444456678899988899988876544
No 311
>PF11713 Peptidase_C80: Peptidase C80 family; InterPro: IPR020974 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This entry identifies a domain that functions as a cysteine peptidase that belongs to MEROPS peptidase family C80 (RTX self-cleaving toxin, clan CD). This domain is found in bacterial toxins that self-process by a cysteine peptidase mechanism. These include Vibrio cholerae RTX toxin [], and Clostridium difficile toxins A and B []. Some pathogenic bacteria produce unrelated toxins that also require activation and processing, the processing often being autolytic as it is in anthrax lethal factor, tentoxilysin (the tetanus neurotoxin) and bontoxilysin (the botulinum neurotoxin), all of which are metallopeptidases.; PDB: 3GCD_C 3EEB_B 3FZY_A 3PEE_A 3PA8_B 3HO6_A.
Probab=60.72 E-value=6.9 Score=26.89 Aligned_cols=51 Identities=22% Similarity=0.192 Sum_probs=27.1
Q ss_pred EEEcCCCCCCCCc--ccccccchhhchHHHHHHHHHh-------cCCCcEEEEEeCcchH
Q 024134 47 TAMDLAASGINMK--KIQDVRSFYEYNEPLLEILASL-------SADEKVILVGHSFGGL 97 (272)
Q Consensus 47 ~~~d~~G~G~s~~--~~~~~~~~~~~~~~~~~~i~~l-------~~~~~~~lvG~S~Gg~ 97 (272)
+-+-+-|||.... ..-..++..+++..+..+-+.+ ..++++.|+|-|++..
T Consensus 57 ~rw~lVGHG~~~~~~~~l~g~~a~~La~~l~~~~~~l~~~~~~~~~P~~IsLvGC~l~~~ 116 (157)
T PF11713_consen 57 VRWQLVGHGRDEFNNQTLAGYSADELANKLIKFKQQLKQKYGINISPKKISLVGCSLADN 116 (157)
T ss_dssp EEEEEE--EESSTSSSEETTEEHHHHHHHHHHHHHHHHHHHTTT--ESEEEEESSS-S-T
T ss_pred ceEEEEEeCCCcCCCceeCCCCHHHHHHHHHHHHHHHHHhccCCCCCCEEEEEEecccCC
Confidence 3344558887721 1123367777777773333333 1356899999998887
No 312
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=60.72 E-value=66 Score=25.29 Aligned_cols=32 Identities=19% Similarity=0.318 Sum_probs=22.3
Q ss_pred EEEecCCCcchh--HHhhHHHHHhCCCeEEEEcC
Q 024134 20 VLVHGSNHGAWC--WYKVKPRLEAAGHRVTAMDL 51 (272)
Q Consensus 20 v~lhG~~~~~~~--~~~~~~~l~~~g~~v~~~d~ 51 (272)
+|+++.+.+... ...++..|.++|+.|..+-.
T Consensus 2 ~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~ 35 (350)
T cd03785 2 ILIAGGGTGGHIFPALALAEELRERGAEVLFLGT 35 (350)
T ss_pred EEEEecCchhhhhHHHHHHHHHHhCCCEEEEEEC
Confidence 466666555444 34788999988999987744
No 313
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=60.26 E-value=71 Score=26.29 Aligned_cols=48 Identities=23% Similarity=0.261 Sum_probs=37.5
Q ss_pred hhchHHHHHHHHHhcCCCcEEEEEeCcchHHHHHHHhhCccc--eeeeeee
Q 024134 68 YEYNEPLLEILASLSADEKVILVGHSFGGLSVALAADKFPHK--ISVAIFL 116 (272)
Q Consensus 68 ~~~~~~~~~~i~~l~~~~~~~lvG~S~Gg~~a~~~a~~~p~~--v~~lvl~ 116 (272)
+++.+.+.++-+.+ ....+.+|--|+=|.-|...|..+-+. +.++|+.
T Consensus 198 e~Lm~El~~Ik~~~-~P~E~llVvDam~GQdA~~~A~aF~e~l~itGvIlT 247 (451)
T COG0541 198 EELMDELKEIKEVI-NPDETLLVVDAMIGQDAVNTAKAFNEALGITGVILT 247 (451)
T ss_pred HHHHHHHHHHHhhc-CCCeEEEEEecccchHHHHHHHHHhhhcCCceEEEE
Confidence 45566677777777 778899999999999999999887664 6677764
No 314
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=60.18 E-value=30 Score=23.22 Aligned_cols=41 Identities=22% Similarity=0.204 Sum_probs=27.8
Q ss_pred eEEEEecCCCcchh--HHhhHHHHHhCCCeEEEEcCCCCCCCC
Q 024134 18 HFVLVHGSNHGAWC--WYKVKPRLEAAGHRVTAMDLAASGINM 58 (272)
Q Consensus 18 ~vv~lhG~~~~~~~--~~~~~~~l~~~g~~v~~~d~~G~G~s~ 58 (272)
++|.+-|...++.. -+.++..|.++||+|.++=.-+||...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~~~g~~~ 43 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKHTDHGQFE 43 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE-STTSTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEEccCCCcc
Confidence 46778888766655 478889999999999977666666554
No 315
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=59.67 E-value=77 Score=24.24 Aligned_cols=73 Identities=15% Similarity=0.202 Sum_probs=43.1
Q ss_pred hhHHHHHh-CCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcCCCcEEE-EEeCcchHHHHHHHhhCcc-ce
Q 024134 34 KVKPRLEA-AGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSADEKVIL-VGHSFGGLSVALAADKFPH-KI 110 (272)
Q Consensus 34 ~~~~~l~~-~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~l-vG~S~Gg~~a~~~a~~~p~-~v 110 (272)
..+..+.+ .++.++.+|.+|..... .+..+.+.++++.. ....+++ +.-++++.-+...+..+.. .+
T Consensus 144 ~~l~~l~~~~~~D~ViIDt~Gr~~~~---------~~~l~el~~~~~~~-~~~~~~LVl~a~~~~~d~~~~~~~f~~~~~ 213 (270)
T PRK06731 144 RALTYFKEEARVDYILIDTAGKNYRA---------SETVEEMIETMGQV-EPDYICLTLSASMKSKDMIEIITNFKDIHI 213 (270)
T ss_pred HHHHHHHhcCCCCEEEEECCCCCcCC---------HHHHHHHHHHHhhh-CCCeEEEEEcCccCHHHHHHHHHHhCCCCC
Confidence 33444543 36899999999875321 23444555666655 3334555 4456778777777776543 46
Q ss_pred eeeeee
Q 024134 111 SVAIFL 116 (272)
Q Consensus 111 ~~lvl~ 116 (272)
+++|+.
T Consensus 214 ~~~I~T 219 (270)
T PRK06731 214 DGIVFT 219 (270)
T ss_pred CEEEEE
Confidence 666643
No 316
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=59.62 E-value=1.1e+02 Score=25.81 Aligned_cols=99 Identities=12% Similarity=0.101 Sum_probs=56.8
Q ss_pred CCeEEEEecCCCcchhH-----HhhHHHHHhCCCeEEEEcCCC----CCCCCcccccccchhhchHHHHHHHHH-----h
Q 024134 16 QKHFVLVHGSNHGAWCW-----YKVKPRLEAAGHRVTAMDLAA----SGINMKKIQDVRSFYEYNEPLLEILAS-----L 81 (272)
Q Consensus 16 ~~~vv~lhG~~~~~~~~-----~~~~~~l~~~g~~v~~~d~~G----~G~s~~~~~~~~~~~~~~~~~~~~i~~-----l 81 (272)
+.++++++... ..+| ..-+..|.+.|+.|+-++. | +|...... ....++.++.+..++.. +
T Consensus 180 ~~PvliaPaMN--~~M~~npat~~Nl~~L~~~G~~vi~P~~-g~lA~~g~~G~Gr--m~e~~~I~~~v~~~~~~~~~~~l 254 (475)
T PRK13982 180 NRPILLAPAMN--PLMWNNPATRRNVAQLKRDGVHMIGPNA-GEMAERGEAGVGR--MAEPLEIAAAAEALLRPPQPKPL 254 (475)
T ss_pred CCCEEEEEcCC--HHHhcCHHHHHHHHHHHHCCCEEECCCC-CccccCCCcCCCC--CCCHHHHHHHHHHHHhhcccccc
Confidence 56788888654 4444 4567788889999886654 2 34443222 24667777777766642 3
Q ss_pred -------------cCCCcEEEEEeCcchHHHHHHHhhCccceeeeeeeecc
Q 024134 82 -------------SADEKVILVGHSFGGLSVALAADKFPHKISVAIFLTAF 119 (272)
Q Consensus 82 -------------~~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~ 119 (272)
..+++|-.++.--.|-.+..+|...-.+=..+++++++
T Consensus 255 ~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp 305 (475)
T PRK13982 255 AGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGP 305 (475)
T ss_pred CCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCC
Confidence 13456666664334444444444332333456666654
No 317
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=59.59 E-value=1e+02 Score=25.54 Aligned_cols=70 Identities=13% Similarity=0.209 Sum_probs=44.3
Q ss_pred HHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcCCCcEEEEEeCcchHHHHHHHhhCcc--ceeeee
Q 024134 37 PRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSADEKVILVGHSFGGLSVALAADKFPH--KISVAI 114 (272)
Q Consensus 37 ~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~lvG~S~Gg~~a~~~a~~~p~--~v~~lv 114 (272)
..+...+|.++.+|-+|.-. .-+.+.+.+..+.+.. ....+++|--++-|.-+...|..+-+ .+.++|
T Consensus 176 ~~~~~~~~DvViIDTaGr~~---------~d~~lm~El~~i~~~~-~p~e~lLVlda~~Gq~a~~~a~~F~~~~~~~g~I 245 (429)
T TIGR01425 176 EKFKKENFDIIIVDTSGRHK---------QEDSLFEEMLQVAEAI-QPDNIIFVMDGSIGQAAEAQAKAFKDSVDVGSVI 245 (429)
T ss_pred HHHHhCCCCEEEEECCCCCc---------chHHHHHHHHHHhhhc-CCcEEEEEeccccChhHHHHHHHHHhccCCcEEE
Confidence 34444689999999998532 2233455566666655 55667777777777666666665533 356666
Q ss_pred ee
Q 024134 115 FL 116 (272)
Q Consensus 115 l~ 116 (272)
+.
T Consensus 246 lT 247 (429)
T TIGR01425 246 IT 247 (429)
T ss_pred EE
Confidence 54
No 318
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=59.58 E-value=34 Score=24.29 Aligned_cols=60 Identities=8% Similarity=0.000 Sum_probs=35.2
Q ss_pred CCCeEEEEecCCCcchhH-----HhhHHHHHhCCCeEEEEcCCCC---CCCCcccccccchhhchHHHHHHHH
Q 024134 15 KQKHFVLVHGSNHGAWCW-----YKVKPRLEAAGHRVTAMDLAAS---GINMKKIQDVRSFYEYNEPLLEILA 79 (272)
Q Consensus 15 ~~~~vv~lhG~~~~~~~~-----~~~~~~l~~~g~~v~~~d~~G~---G~s~~~~~~~~~~~~~~~~~~~~i~ 79 (272)
.+.++|+++-+ +..+| ..-+..|.+.|+.|+-+. +|+ |...... ..+++++++.+...+.
T Consensus 112 ~~~pvvi~Pam--n~~m~~~p~~~~Nl~~L~~~G~~vi~p~-~g~la~~~~g~g~--~~~~~~i~~~v~~~~~ 179 (182)
T PRK07313 112 ATTPKLIAPAM--NTKMYENPATQRNLKTLKEDGVQEIEPK-EGLLACGDEGYGA--LADIETILETIENTLK 179 (182)
T ss_pred CCCCEEEEECC--CHHHhcCHHHHHHHHHHHHCCCEEECCC-CCccccCCccCCC--CCCHHHHHHHHHHHhc
Confidence 35677887753 33333 456678888898888776 444 4433222 2366666666655443
No 319
>KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism]
Probab=59.53 E-value=65 Score=23.33 Aligned_cols=33 Identities=24% Similarity=0.261 Sum_probs=23.6
Q ss_pred eEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCC
Q 024134 18 HFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLA 52 (272)
Q Consensus 18 ~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~ 52 (272)
.+..+.|. ++..=+.+...|+++|++|++.|+.
T Consensus 15 k~~~vtGg--~sGIGrAia~~la~~Garv~v~dl~ 47 (256)
T KOG1200|consen 15 KVAAVTGG--SSGIGRAIAQLLAKKGARVAVADLD 47 (256)
T ss_pred ceeEEecC--CchHHHHHHHHHHhcCcEEEEeecc
Confidence 34555544 3444467888899999999999876
No 320
>PF03283 PAE: Pectinacetylesterase
Probab=59.52 E-value=27 Score=27.91 Aligned_cols=39 Identities=33% Similarity=0.532 Sum_probs=25.3
Q ss_pred hcCCCcEEEEEeCcchHHHHHHHh----hCccceeeeeeeecc
Q 024134 81 LSADEKVILVGHSFGGLSVALAAD----KFPHKISVAIFLTAF 119 (272)
Q Consensus 81 l~~~~~~~lvG~S~Gg~~a~~~a~----~~p~~v~~lvl~~~~ 119 (272)
+...++++|-|.|.||.-++..+. ..|..++-..+.++.
T Consensus 152 l~~a~~vlltG~SAGG~g~~~~~d~~~~~lp~~~~v~~~~DsG 194 (361)
T PF03283_consen 152 LPNAKQVLLTGCSAGGLGAILHADYVRDRLPSSVKVKCLSDSG 194 (361)
T ss_pred CcccceEEEeccChHHHHHHHHHHHHHHHhccCceEEEecccc
Confidence 345678999999999997776553 455444444444443
No 321
>TIGR02816 pfaB_fam PfaB family protein. The protein PfaB is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. The fairly permissive trusted cutoff set for this model allows detection of homologs encoded near homologs to other proteins of the locus: PfaA, PfaC, and/or PfaD. The likely role in every case is either polyunsaturated fatty acid or polyketide biosynthesis.
Probab=59.50 E-value=12 Score=31.73 Aligned_cols=31 Identities=19% Similarity=0.172 Sum_probs=24.4
Q ss_pred HHHH-HHhcCCCcEEEEEeCcchHHHHHHHhhC
Q 024134 75 LEIL-ASLSADEKVILVGHSFGGLSVALAADKF 106 (272)
Q Consensus 75 ~~~i-~~l~~~~~~~lvG~S~Gg~~a~~~a~~~ 106 (272)
.+++ +.. +.+|-.++|||+|=..|+..|.-.
T Consensus 255 a~ll~~~~-GI~Pdav~GHSlGE~aAa~aAGvl 286 (538)
T TIGR02816 255 TQLLCDEF-AIKPDFALGYSKGEASMWASLGVW 286 (538)
T ss_pred HHHHHHhc-CCCCCEEeecCHHHHHHHHHhCCC
Confidence 3444 355 889999999999999888887654
No 322
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=59.38 E-value=25 Score=24.30 Aligned_cols=52 Identities=13% Similarity=0.033 Sum_probs=28.3
Q ss_pred hhhchHHHHHHHHHh-cCCCcEEEEEeCcchHHHHHHHhhCccceeeeeeeec
Q 024134 67 FYEYNEPLLEILASL-SADEKVILVGHSFGGLSVALAADKFPHKISVAIFLTA 118 (272)
Q Consensus 67 ~~~~~~~~~~~i~~l-~~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~ 118 (272)
.++..+.+.++++.+ ...+++++.|-|..|..-+.++...++.+..++=.+|
T Consensus 50 ~~~~~~~l~~~L~~~~~~gk~I~~yGA~~kg~tlln~~g~~~~~I~~vvD~np 102 (160)
T PF08484_consen 50 VEQSKAELREFLEKLKAEGKRIAGYGAGAKGNTLLNYFGLDNDLIDYVVDDNP 102 (160)
T ss_dssp HHHHHHHHHHHHHHHHHTT--EEEE---SHHHHHHHHHT--TTTS--EEES-G
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEECcchHHHHHHHHhCCCcceeEEEEeCCh
Confidence 344444555555554 3557899999999999888888766776777765444
No 323
>PHA02114 hypothetical protein
Probab=58.96 E-value=18 Score=22.29 Aligned_cols=33 Identities=36% Similarity=0.377 Sum_probs=22.1
Q ss_pred CeEEEEecCCCcchhHHhhHHHHHhCCCeEEEE
Q 024134 17 KHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAM 49 (272)
Q Consensus 17 ~~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~ 49 (272)
.+||+=-.+..+..-|-.++..|.+.||+|++-
T Consensus 83 gtivldvn~amsr~pwi~v~s~le~~g~~vvat 115 (127)
T PHA02114 83 GTIVLDVNYAMSRAPWIKVISRLEEAGFNVVAT 115 (127)
T ss_pred CeEEEEehhhhccCcHHHHHHHHHhcCceeeeh
Confidence 355555556666666777777777777777764
No 324
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=58.78 E-value=32 Score=25.27 Aligned_cols=31 Identities=35% Similarity=0.385 Sum_probs=23.7
Q ss_pred CCeEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcC
Q 024134 16 QKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDL 51 (272)
Q Consensus 16 ~~~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~ 51 (272)
.+.=||++|-|-+.+ +..|+++||+|+.+|+
T Consensus 37 ~~~rvLvPgCG~g~D-----~~~La~~G~~VvGvDl 67 (218)
T PF05724_consen 37 PGGRVLVPGCGKGYD-----MLWLAEQGHDVVGVDL 67 (218)
T ss_dssp TSEEEEETTTTTSCH-----HHHHHHTTEEEEEEES
T ss_pred CCCeEEEeCCCChHH-----HHHHHHCCCeEEEEec
Confidence 345688898877655 3568889999999997
No 325
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=58.58 E-value=94 Score=25.11 Aligned_cols=37 Identities=16% Similarity=0.257 Sum_probs=25.9
Q ss_pred HHhcCCCcEEEEEeC-cchHHHHHHHhhCccceeeeeeeecc
Q 024134 79 ASLSADEKVILVGHS-FGGLSVALAADKFPHKISVAIFLTAF 119 (272)
Q Consensus 79 ~~l~~~~~~~lvG~S-~Gg~~a~~~a~~~p~~v~~lvl~~~~ 119 (272)
+.+ ...++.++|-. .|+.++..++.. -|..+++++.-
T Consensus 131 ~~l-~~~~VlvvG~GG~Gs~ia~~La~~---Gvg~i~lvD~d 168 (376)
T PRK08762 131 RRL-LEARVLLIGAGGLGSPAALYLAAA---GVGTLGIVDHD 168 (376)
T ss_pred HHH-hcCcEEEECCCHHHHHHHHHHHHc---CCCeEEEEeCC
Confidence 345 56789999864 566677777643 37788888864
No 326
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=56.77 E-value=61 Score=25.34 Aligned_cols=73 Identities=14% Similarity=0.206 Sum_probs=41.2
Q ss_pred CCeEEEEecCCCcchhHHhhHHHHHhC-CCeEEEEcCCC------CCCCCc----------------ccccccchhhchH
Q 024134 16 QKHFVLVHGSNHGAWCWYKVKPRLEAA-GHRVTAMDLAA------SGINMK----------------KIQDVRSFYEYNE 72 (272)
Q Consensus 16 ~~~vv~lhG~~~~~~~~~~~~~~l~~~-g~~v~~~d~~G------~G~s~~----------------~~~~~~~~~~~~~ 72 (272)
.+.++++-|-.+++.. .++..|++. +..++..|-.- +|...+ .+...++..++.+
T Consensus 3 ~~~~i~i~GptgsGKt--~la~~la~~~~~~iis~Ds~Qvy~~l~i~Takp~~~E~~gv~hhlid~~~~~~~~s~~~f~~ 80 (307)
T PRK00091 3 KPKVIVIVGPTASGKT--ALAIELAKRLNGEIISADSMQVYRGMDIGTAKPTAEERAGVPHHLIDILDPTESYSVADFQR 80 (307)
T ss_pred CceEEEEECCCCcCHH--HHHHHHHHhCCCcEEeccccceeecccccCCCCCHHHHcCccEEeecccChhhcccHHHHHH
Confidence 3568888888777664 344455443 45777776531 111111 1123367778888
Q ss_pred HHHHHHHHh-cCCCcEEEE
Q 024134 73 PLLEILASL-SADEKVILV 90 (272)
Q Consensus 73 ~~~~~i~~l-~~~~~~~lv 90 (272)
+..+.++.+ ...+.++++
T Consensus 81 ~a~~~i~~i~~~gk~pIlv 99 (307)
T PRK00091 81 DALAAIADILARGKLPILV 99 (307)
T ss_pred HHHHHHHHHHhCCCCEEEE
Confidence 888888765 233445555
No 327
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=56.68 E-value=52 Score=21.36 Aligned_cols=71 Identities=23% Similarity=0.223 Sum_probs=45.7
Q ss_pred eEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcCCCcEEEEEeCcchH
Q 024134 18 HFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSADEKVILVGHSFGGL 97 (272)
Q Consensus 18 ~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~lvG~S~Gg~ 97 (272)
.||.-|| .-+......++.+....-.+.++++. . ..+.+++.+.+.+.++.....+.++++.-=+||.
T Consensus 3 ili~sHG--~~A~gi~~~~~~i~G~~~~i~~~~~~--------~--~~~~~~~~~~i~~~i~~~~~~~~viil~Dl~GGS 70 (122)
T cd00006 3 IIIATHG--GFASGLLNSAEMILGEQENVEAIDFP--------P--GESPDDLLEKIKAALAELDSGEGVLILTDLFGGS 70 (122)
T ss_pred EEEEcCH--HHHHHHHHHHHHhcCCCCCeEEEEeC--------C--CCCHHHHHHHHHHHHHHhCCCCcEEEEEeCCCCC
Confidence 5788888 34444555566664333467777764 1 1477888889999999883345666666555776
Q ss_pred HHH
Q 024134 98 SVA 100 (272)
Q Consensus 98 ~a~ 100 (272)
...
T Consensus 71 p~n 73 (122)
T cd00006 71 PNN 73 (122)
T ss_pred HHH
Confidence 543
No 328
>cd07224 Pat_like Patatin-like phospholipase. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of lipid acyl hydrolase, catalysing the cleavage of fatty acids from membrane lipids. Members of this family have been found also in vertebrates.
Probab=56.41 E-value=20 Score=26.59 Aligned_cols=31 Identities=26% Similarity=0.279 Sum_probs=22.4
Q ss_pred HHHHHhcCCC--cEEEEEeCcchHHHHHHHhhCc
Q 024134 76 EILASLSADE--KVILVGHSFGGLSVALAADKFP 107 (272)
Q Consensus 76 ~~i~~l~~~~--~~~lvG~S~Gg~~a~~~a~~~p 107 (272)
+.+.+. +.. ...+.|-|.|+.++..++...+
T Consensus 19 ~~L~e~-gi~~~~~~i~G~SAGAl~aa~~asg~~ 51 (233)
T cd07224 19 SLLIEA-GVINETTPLAGASAGSLAAACSASGLS 51 (233)
T ss_pred HHHHHc-CCCCCCCEEEEEcHHHHHHHHHHcCCC
Confidence 334344 444 4479999999999999997654
No 329
>COG2326 Uncharacterized conserved protein [Function unknown]
Probab=55.64 E-value=72 Score=24.09 Aligned_cols=76 Identities=17% Similarity=0.269 Sum_probs=50.8
Q ss_pred HhhhhhhccCCCeEEEEecCCCc--chhHHhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhch-HHHHHHHHHhc
Q 024134 6 KVKKMTEAKKQKHFVLVHGSNHG--AWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYN-EPLLEILASLS 82 (272)
Q Consensus 6 ~~~~~~~~~~~~~vv~lhG~~~~--~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~-~~~~~~i~~l~ 82 (272)
.+..|-...+...|+++-|.-.. ...-..+.+.|..+|++|+++--| |-++.. .-+-..+.++.
T Consensus 63 klq~~~~~~~~~vvivfEGrDAAGKgG~Ikri~~~lNPR~~rvval~aP-------------t~~E~~qwY~qRy~~~lP 129 (270)
T COG2326 63 KLQRWVAETGQRVVIVFEGRDAAGKGGAIKRITEALNPRGARVVALPAP-------------TDRERGQWYFQRYVAHLP 129 (270)
T ss_pred HHHHHHHhcCCeEEEEEecccccCCCchhHHHhhhcCCceeEEeecCCC-------------ChHhhccHHHHHHHHhCC
Confidence 44455555677888888887433 344678889999999999998765 222222 23556777775
Q ss_pred CCCcEEEEEeCc
Q 024134 83 ADEKVILVGHSF 94 (272)
Q Consensus 83 ~~~~~~lvG~S~ 94 (272)
..+.+++.--|+
T Consensus 130 a~GeiviFdRSw 141 (270)
T COG2326 130 AAGEIVIFDRSW 141 (270)
T ss_pred CCCeEEEechhh
Confidence 556677766664
No 330
>PF04084 ORC2: Origin recognition complex subunit 2 ; InterPro: IPR007220 The Origin Recognition Complex (ORC) is a six-subunit ATP-dependent DNA-binding complex encoded in yeast by ORC1-6 []. ORC is a central component for eukaryotic DNA replication, and binds chromatin at replication origins throughout the cell cycle []. ORC directs DNA replication throughout the genome and is required for its initiation [, , ]. ORC bound at replication origins serves as the foundation for assembly of the pre-replicative complex (pre-RC), which includes Cdc6, Tah11 (aka Cdt1), and the Mcm2-7 complex [, , ]. Pre-RC assembly during G1 is required for replication licensing of chromosomes prior to DNA synthesis during S phase [, , ]. Cell cycle-regulated phosphorylation of Orc2, Orc6, Cdc6, and MCM by the cyclin-dependent protein kinase Cdc28 regulates initiation of DNA replication, including blocking reinitiation in G2/M phase [, , , ]. In yeast, ORC also plays a role in the establishment of silencing at the mating-type loci Hidden MAT Left (HML) and Hidden MAT Right (HMR) [, , ]. ORC participates in the assembly of transcriptionally silent chromatin at HML and HMR by recruiting the Sir1 silencing protein to the HML and HMR silencers [, , ]. Both Orc1 and Orc5 bind ATP, though only Orc1 has ATPase activity []. The binding of ATP by Orc1 is required for ORC binding to DNA and is essential for cell viability []. The ATPase activity of Orc1 is involved in formation of the pre-RC [, , ]. ATP binding by Orc5 is crucial for the stability of ORC as a whole. Only the Orc1-5 subunits are required for origin binding; Orc6 is essential for maintenance of pre-RCs once formed []. Interactions within ORC suggest that Orc2-3-6 may form a core complex []. ORC homologues have been found in various eukaryotes, including fission yeast, insects, amphibians, and humans []. This entry represents subunit 2, which binds the origin of replication. It plays a role in chromosome replication and mating type transcriptional silencing.; GO: 0006260 DNA replication, 0000808 origin recognition complex, 0005634 nucleus
Probab=54.97 E-value=1e+02 Score=24.33 Aligned_cols=78 Identities=15% Similarity=0.059 Sum_probs=46.4
Q ss_pred EEEEecCCCcchhHHhhHHHHHhCC--CeEEEEcCCCCCCCCcc---------------cccccchhhchHHHHHHHHHh
Q 024134 19 FVLVHGSNHGAWCWYKVKPRLEAAG--HRVTAMDLAASGINMKK---------------IQDVRSFYEYNEPLLEILASL 81 (272)
Q Consensus 19 vv~lhG~~~~~~~~~~~~~~l~~~g--~~v~~~d~~G~G~s~~~---------------~~~~~~~~~~~~~~~~~i~~l 81 (272)
=|+++|+|+=......+++.+.... ..|++++ |+-.+-.. .....+..+.++.+.+.++..
T Consensus 56 nlL~YG~GSKr~lL~~Fa~~~l~~~~~~~~vvvn--Gy~p~~~~k~il~~I~~~l~~~~~~~~~~~~~~~~~i~~~l~~~ 133 (326)
T PF04084_consen 56 NLLFYGYGSKRKLLNDFAEKYLSDWGDGPVVVVN--GYFPSLSIKDILNTIEEALLPEPSKKPKSPSEQLDFIISYLESR 133 (326)
T ss_pred eEEEEecChHHHHHHHHHHHHhhccCCCcEEEEE--ccCCCCcHHHHHHHHHHHHhhhcccccCCHHHHHHHHHHHHhcc
Confidence 4778888877777778877765542 5666666 33221100 011124445555555555554
Q ss_pred cCCCcEEEEEeCcchHH
Q 024134 82 SADEKVILVGHSFGGLS 98 (272)
Q Consensus 82 ~~~~~~~lvG~S~Gg~~ 98 (272)
....+++|+=|+.=|..
T Consensus 134 ~~~~~l~lvIHnIDg~~ 150 (326)
T PF04084_consen 134 PSPPPLYLVIHNIDGPS 150 (326)
T ss_pred CCCCceEEEEECCCChh
Confidence 22678999999998864
No 331
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=54.70 E-value=46 Score=22.58 Aligned_cols=31 Identities=16% Similarity=0.186 Sum_probs=21.6
Q ss_pred cCCCcchhHHhhHHHHHhCCCeEEEEcCCCC
Q 024134 24 GSNHGAWCWYKVKPRLEAAGHRVTAMDLAAS 54 (272)
Q Consensus 24 G~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~ 54 (272)
+.||.......++..|+++|++|..+....-
T Consensus 10 ~~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~ 40 (177)
T PF13439_consen 10 NIGGAERVVLNLARALAKRGHEVTVVSPGVK 40 (177)
T ss_dssp SSSHHHHHHHHHHHHHHHTT-EEEEEESS-T
T ss_pred CCChHHHHHHHHHHHHHHCCCEEEEEEcCCC
Confidence 4455555677899999999999988854433
No 332
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=54.28 E-value=29 Score=24.47 Aligned_cols=34 Identities=18% Similarity=0.217 Sum_probs=23.8
Q ss_pred EEEEecCCCcchh--HHhhHHHHHhCCCeEEEEcCC
Q 024134 19 FVLVHGSNHGAWC--WYKVKPRLEAAGHRVTAMDLA 52 (272)
Q Consensus 19 vv~lhG~~~~~~~--~~~~~~~l~~~g~~v~~~d~~ 52 (272)
|.+..+-|+.+.. -..++..|+++|++|+.+|.-
T Consensus 1 I~v~~~kGG~GKTt~a~~la~~la~~g~~VlliD~D 36 (195)
T PF01656_consen 1 IAVTSGKGGVGKTTIAANLAQALARKGKKVLLIDLD 36 (195)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEES
T ss_pred CEEEcCCCCccHHHHHHHHHhccccccccccccccC
Confidence 3455555666555 356888899999999999984
No 333
>cd07206 Pat_TGL3-4-5_SDP1 Triacylglycerol lipase 3, 4, and 5 and Sugar-Dependent 1 lipase. Triacylglycerol lipases are involved in triacylglycerol mobilization and degradation; they are found in lipid particles. TGL4 is 30% homologus to TGL3, whereas TGL5 is 26% homologus to TGL3. Sugar-Dependent 1 (SDP1) lipase has a patatin-like acyl-hydrolase domain that initiates the breakdown of storage oil in germinating Arabidopsis seeds. This family includes subfamilies of proteins: TGL3, TGL4, TGL5, and SDP1.
Probab=53.33 E-value=19 Score=27.85 Aligned_cols=28 Identities=18% Similarity=0.220 Sum_probs=22.0
Q ss_pred CCCcEEEEEeCcchHHHHHHHhhCccce
Q 024134 83 ADEKVILVGHSFGGLSVALAADKFPHKI 110 (272)
Q Consensus 83 ~~~~~~lvG~S~Gg~~a~~~a~~~p~~v 110 (272)
+..+-++.|.|.|+.+|..++....+.+
T Consensus 95 ~l~~~~i~GtSaGAi~aa~~~~~~~~El 122 (298)
T cd07206 95 DLLPRVISGSSAGAIVAALLGTHTDEEL 122 (298)
T ss_pred CCCCCEEEEEcHHHHHHHHHHcCCcHHH
Confidence 5667789999999999999987644333
No 334
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=52.71 E-value=45 Score=23.26 Aligned_cols=36 Identities=17% Similarity=0.154 Sum_probs=28.1
Q ss_pred cCCCeEEEEecCCCcchhHHhhHHHHHhCCCeEEEE
Q 024134 14 KKQKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAM 49 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~ 49 (272)
...+.|+++-|-|.+...=--.++.|..+|+.|.++
T Consensus 23 ~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~ 58 (169)
T PF03853_consen 23 PKGPRVLILCGPGNNGGDGLVAARHLANRGYNVTVY 58 (169)
T ss_dssp CTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred cCCCeEEEEECCCCChHHHHHHHHHHHHCCCeEEEE
Confidence 456789999999888877667889999999998884
No 335
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=52.25 E-value=37 Score=24.87 Aligned_cols=38 Identities=24% Similarity=0.288 Sum_probs=27.6
Q ss_pred cCCCeEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCC
Q 024134 14 KKQKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLA 52 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~ 52 (272)
++.+..|++-|....+ .=..++..|++.||.|++--.+
T Consensus 4 ~~~~k~VlItgcs~GG-IG~ala~ef~~~G~~V~AtaR~ 41 (289)
T KOG1209|consen 4 QSQPKKVLITGCSSGG-IGYALAKEFARNGYLVYATARR 41 (289)
T ss_pred ccCCCeEEEeecCCcc-hhHHHHHHHHhCCeEEEEEccc
Confidence 4567788888854443 3346788899999999997654
No 336
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=52.23 E-value=1e+02 Score=26.03 Aligned_cols=72 Identities=13% Similarity=0.100 Sum_probs=49.6
Q ss_pred cCCCeEEEEecCCCcch--hHHhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchH-HHHHHHHHhcCCCcEEEE
Q 024134 14 KKQKHFVLVHGSNHGAW--CWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNE-PLLEILASLSADEKVILV 90 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~--~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~-~~~~~i~~l~~~~~~~lv 90 (272)
.+.+.||++-|+-+++. .-..+...|..+|++|+++..|. -++... -+-.+-.+++..+.+.+.
T Consensus 37 ~~~~vlIv~eG~DaaGKg~~I~~l~~~ldprg~~v~~~~~P~-------------~eE~~~~flwRfw~~lP~~G~I~IF 103 (493)
T TIGR03708 37 AGFPVIILIEGWDGAGKGETINLLNEWMDPRGIETHAFGRPS-------------DEERERPPMWRFWRRLPPKGKIGIF 103 (493)
T ss_pred cCCeEEEEEeCCCCCChHHHHHHHHHHhCcCccEEEeCCCCC-------------HHHhcCcHHHHHHHhCCCCCeEEEE
Confidence 46789999999977664 36788899999999999998762 222222 244566666555667776
Q ss_pred EeCcchHH
Q 024134 91 GHSFGGLS 98 (272)
Q Consensus 91 G~S~Gg~~ 98 (272)
=-|+=+-+
T Consensus 104 dRSWY~~v 111 (493)
T TIGR03708 104 FGSWYTRP 111 (493)
T ss_pred cCcccchh
Confidence 66654443
No 337
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=51.97 E-value=77 Score=22.19 Aligned_cols=53 Identities=23% Similarity=0.234 Sum_probs=32.1
Q ss_pred HHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcCCCcEEEEEeCcc
Q 024134 39 LEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSADEKVILVGHSFG 95 (272)
Q Consensus 39 l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~lvG~S~G 95 (272)
|.+.|++.+.+|.-+.=..+... .-..++.+.+.++.+.. +.+++.++..|.|
T Consensus 36 Lk~~Gik~li~DkDNTL~~~~~~---~i~~~~~~~~~~l~~~~-~~~~v~IvSNsaG 88 (168)
T PF09419_consen 36 LKKKGIKALIFDKDNTLTPPYED---EIPPEYAEWLNELKKQF-GKDRVLIVSNSAG 88 (168)
T ss_pred hhhcCceEEEEcCCCCCCCCCcC---cCCHHHHHHHHHHHHHC-CCCeEEEEECCCC
Confidence 77899999999986553222111 12233334444444433 4458999999986
No 338
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=51.82 E-value=21 Score=26.32 Aligned_cols=30 Identities=13% Similarity=0.118 Sum_probs=21.7
Q ss_pred eEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCC
Q 024134 18 HFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLA 52 (272)
Q Consensus 18 ~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~ 52 (272)
.=||++|-|-+.+. ..|+++||+|+.+|+-
T Consensus 45 ~rvLvPgCGkg~D~-----~~LA~~G~~V~GvDlS 74 (226)
T PRK13256 45 SVCLIPMCGCSIDM-----LFFLSKGVKVIGIELS 74 (226)
T ss_pred CeEEEeCCCChHHH-----HHHHhCCCcEEEEecC
Confidence 46677776655543 4578899999999973
No 339
>COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]
Probab=51.35 E-value=37 Score=28.98 Aligned_cols=101 Identities=16% Similarity=0.171 Sum_probs=54.5
Q ss_pred CCCeEEEEecCCCcchhHHhhHH------HHH-hC-CCeEEEEcC----CCCCCCCccccc--ccchhhchHHHHHHHHH
Q 024134 15 KQKHFVLVHGSNHGAWCWYKVKP------RLE-AA-GHRVTAMDL----AASGINMKKIQD--VRSFYEYNEPLLEILAS 80 (272)
Q Consensus 15 ~~~~vv~lhG~~~~~~~~~~~~~------~l~-~~-g~~v~~~d~----~G~G~s~~~~~~--~~~~~~~~~~~~~~i~~ 80 (272)
..-++=+-=|.+-+......+.+ .|+ -+ |=.|+.-.- +-+|..+.+... ......+...+.+.+.
T Consensus 257 ~~ipLTLSiGvg~g~~~~~elg~vA~~~L~lAlgRGGDQVvIke~~~k~~fyGG~s~~~ekrTRvRaRvis~al~d~i~- 335 (655)
T COG3887 257 KNIPLTLSIGVGYGENNLIELGEVAQSNLDLALGRGGDQVVIKENNGKVRFYGGKSNPMEKRTRVRARVISTALSDIIK- 335 (655)
T ss_pred cCcceEEEEEeccCcccHHHHHHHHHHhHHHHhccCCceEEEEcCCCceeeeCCCcchhHHhHHHHHHHHHHHHHHHHh-
Confidence 34467777777766655443332 122 13 334444322 234443332221 1233333444444444
Q ss_pred hcCCCcEEEEEe------CcchHHHHHHHhhCccceeeeeeeecc
Q 024134 81 LSADEKVILVGH------SFGGLSVALAADKFPHKISVAIFLTAF 119 (272)
Q Consensus 81 l~~~~~~~lvG~------S~Gg~~a~~~a~~~p~~v~~lvl~~~~ 119 (272)
..++|+++|| |.|+.+++..-+..-.+ .+-+.++|.
T Consensus 336 --e~d~VfImGHk~pDmDalGsAig~~~~A~~~~~-~a~~v~dp~ 377 (655)
T COG3887 336 --ESDNVFIMGHKFPDMDALGSAIGMQKFASMNNK-EAFAVLDPE 377 (655)
T ss_pred --hcCcEEEEccCCCChHHHHHHHHHHHHHHhccc-ccEEEECcc
Confidence 4589999999 78999998876655444 566677763
No 340
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=50.71 E-value=70 Score=22.66 Aligned_cols=13 Identities=23% Similarity=0.537 Sum_probs=5.9
Q ss_pred CCeEEEEcCCCCC
Q 024134 43 GHRVTAMDLAASG 55 (272)
Q Consensus 43 g~~v~~~d~~G~G 55 (272)
|+.++-+-+-|.|
T Consensus 33 ~~~~iNLGfsG~~ 45 (178)
T PF14606_consen 33 GLDVINLGFSGNG 45 (178)
T ss_dssp T-EEEEEE-TCCC
T ss_pred CCCeEeeeecCcc
Confidence 4666665555444
No 341
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=50.31 E-value=87 Score=24.63 Aligned_cols=99 Identities=17% Similarity=0.098 Sum_probs=57.7
Q ss_pred CeEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcCCCcEEEEEeCcch
Q 024134 17 KHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSADEKVILVGHSFGG 96 (272)
Q Consensus 17 ~~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~lvG~S~Gg 96 (272)
-+++++.- +....|..+.+.+..+++.-.-.=++-+|........ ..-+.-...+..++... ...+++|||-|-==
T Consensus 214 apvfYvSn--SPw~~f~~L~efi~~~~~P~GPl~L~~~g~~~~~i~~-sga~rK~~~l~nil~~~-p~~kfvLVGDsGE~ 289 (373)
T COG4850 214 APVFYVSN--SPWQLFPTLQEFITNRNFPYGPLLLRRWGGVLDNIIE-SGAARKGQSLRNILRRY-PDRKFVLVGDSGEH 289 (373)
T ss_pred CCeEEecC--ChhHhHHHHHHHHhcCCCCCCchhHhhcCCccccccc-chhhhcccHHHHHHHhC-CCceEEEecCCCCc
Confidence 46777642 2233466677777766665544445555432111110 12222334456678888 88999999987221
Q ss_pred --HHHHHHHhhCccceeeeeeeecc
Q 024134 97 --LSVALAADKFPHKISVAIFLTAF 119 (272)
Q Consensus 97 --~~a~~~a~~~p~~v~~lvl~~~~ 119 (272)
.+=.+++..+|++|.++..=+..
T Consensus 290 DpeIYae~v~~fP~RIl~I~IRdvs 314 (373)
T COG4850 290 DPEIYAEMVRCFPNRILGIYIRDVS 314 (373)
T ss_pred CHHHHHHHHHhCccceeeEeeeecc
Confidence 24456677899999997765544
No 342
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=49.91 E-value=66 Score=23.77 Aligned_cols=48 Identities=17% Similarity=0.269 Sum_probs=28.8
Q ss_pred HHhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcCCCcEEEE
Q 024134 32 WYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSADEKVILV 90 (272)
Q Consensus 32 ~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~lv 90 (272)
.+.+++.|.++|++|..+.+.- ..+...+.+.+..+++.. +...+.++
T Consensus 51 MRhfa~~L~~~G~~V~Y~~~~~----------~~~~~s~~~~L~~~~~~~-~~~~~~~~ 98 (224)
T PF04244_consen 51 MRHFADELRAKGFRVHYIELDD----------PENTQSFEDALARALKQH-GIDRLHVM 98 (224)
T ss_dssp HHHHHHHHHHTT--EEEE-TT-----------TT--SSHHHHHHHHHHHH-----EEEE
T ss_pred HHHHHHHHHhCCCEEEEEeCCC----------ccccccHHHHHHHHHHHc-CCCEEEEE
Confidence 4678899999999999998751 123346677788888888 77777766
No 343
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=49.30 E-value=1.2e+02 Score=23.15 Aligned_cols=73 Identities=16% Similarity=0.230 Sum_probs=45.1
Q ss_pred cCCCeEEEEecCCCcchhHHhhHHHHHhCCCe-EEEEcCCCCCCCCc-c-cccccchhhchHHHHHHHHHhcCCCcEEE-
Q 024134 14 KKQKHFVLVHGSNHGAWCWYKVKPRLEAAGHR-VTAMDLAASGINMK-K-IQDVRSFYEYNEPLLEILASLSADEKVIL- 89 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~~~~~~~~l~~~g~~-v~~~d~~G~G~s~~-~-~~~~~~~~~~~~~~~~~i~~l~~~~~~~l- 89 (272)
..+.||++--|...+...|...++.+.+.|.. ++... +|. |.. + .....++. ....+++. -.-|+.+
T Consensus 130 ~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~l~~-rG~--s~y~~~~~~~~dl~-----~i~~lk~~-~~~pV~~d 200 (260)
T TIGR01361 130 KQGKPVLLKRGMGNTIEEWLYAAEYILSSGNGNVILCE-RGI--RTFEKATRNTLDLS-----AVPVLKKE-THLPIIVD 200 (260)
T ss_pred cCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEE-CCC--CCCCCCCcCCcCHH-----HHHHHHHh-hCCCEEEc
Confidence 34678999999998999999999999887764 44443 333 322 1 11111221 12233333 2367877
Q ss_pred EEeCcc
Q 024134 90 VGHSFG 95 (272)
Q Consensus 90 vG~S~G 95 (272)
-+||.|
T Consensus 201 s~Hs~G 206 (260)
T TIGR01361 201 PSHAAG 206 (260)
T ss_pred CCCCCC
Confidence 799988
No 344
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=48.80 E-value=70 Score=26.04 Aligned_cols=59 Identities=12% Similarity=0.005 Sum_probs=34.3
Q ss_pred hHHHHHhC--CCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcCCCcEEEEEeCcch
Q 024134 35 VKPRLEAA--GHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSADEKVILVGHSFGG 96 (272)
Q Consensus 35 ~~~~l~~~--g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~lvG~S~Gg 96 (272)
+++.+.++ -|.||.+|.|.++.|..... .-..++.+-+...++-+ ..+-+.++..+.+.
T Consensus 280 ~l~~~~~~g~~fDlIilDPPsF~r~k~~~~--~~~rdy~~l~~~~~~iL-~pgG~l~~~s~~~~ 340 (393)
T COG1092 280 WLRKAERRGEKFDLIILDPPSFARSKKQEF--SAQRDYKDLNDLALRLL-APGGTLVTSSCSRH 340 (393)
T ss_pred HHHHHHhcCCcccEEEECCcccccCcccch--hHHHHHHHHHHHHHHHc-CCCCEEEEEecCCc
Confidence 34445443 39999999999999976441 23344444444555555 44445555444443
No 345
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=48.36 E-value=1.1e+02 Score=22.48 Aligned_cols=87 Identities=16% Similarity=0.169 Sum_probs=45.5
Q ss_pred CCCeEEEEecCCCcchh-HHhhHHHHHhCCCe-EEEEcCCCCCCCCccc--c---c-------ccchhhchH-----HHH
Q 024134 15 KQKHFVLVHGSNHGAWC-WYKVKPRLEAAGHR-VTAMDLAASGINMKKI--Q---D-------VRSFYEYNE-----PLL 75 (272)
Q Consensus 15 ~~~~vv~lhG~~~~~~~-~~~~~~~l~~~g~~-v~~~d~~G~G~s~~~~--~---~-------~~~~~~~~~-----~~~ 75 (272)
.++.|++++-.+..... .+.+.+.+.+.|.. +..++......+..+. . . .-+...+.+ .+.
T Consensus 28 ~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~v~~~~~~~~~~a~~~~~~~~l~~ad~I~~~GG~~~~~~~~l~~t~l~ 107 (217)
T cd03145 28 AGARIVVIPAASEEPAEVGEEYRDVFERLGAREVEVLVIDSREAANDPEVVARLRDADGIFFTGGDQLRITSALGGTPLL 107 (217)
T ss_pred CCCcEEEEeCCCcChhHHHHHHHHHHHHcCCceeEEeccCChHHcCCHHHHHHHHhCCEEEEeCCcHHHHHHHHcCChHH
Confidence 56788888876655433 45566667666764 5666654322211110 0 0 001111111 233
Q ss_pred HHHHHhcCCCcEEEEEeCcchHHHHHH
Q 024134 76 EILASLSADEKVILVGHSFGGLSVALA 102 (272)
Q Consensus 76 ~~i~~l~~~~~~~lvG~S~Gg~~a~~~ 102 (272)
+.|+.. -.+..+++|.|.|+++....
T Consensus 108 ~~l~~~-~~~G~v~~G~SAGA~i~~~~ 133 (217)
T cd03145 108 DALRKV-YRGGVVIGGTSAGAAVMSDT 133 (217)
T ss_pred HHHHHH-HHcCCEEEEccHHHHhhhhc
Confidence 344433 22567899999999986544
No 346
>cd07218 Pat_iPLA2 Calcium-independent phospholipase A2; Classified as Group IVA-1 PLA2. Calcium-independent phospholipase A2; otherwise known as Group IVA-1 PLA2. It contains the lipase consensus sequence (Gly-X-Ser-X-Gly);mutagenesis experiments confirm the role of this serine as a nucleophile. Some members of this group show triacylglycerol lipase activity (EC 3:1:1:3). Members include iPLA-1, iPLA-2, and iPLA-3 from Aedes aegypti and show acylglycerol transacylase/lipase activity. Also includes putative iPLA2-eta from Pediculus humanus corporis which shows patatin-like phospholipase activity.
Probab=48.27 E-value=31 Score=25.82 Aligned_cols=22 Identities=23% Similarity=0.258 Sum_probs=18.2
Q ss_pred cEEEEEeCcchHHHHHHHhhCc
Q 024134 86 KVILVGHSFGGLSVALAADKFP 107 (272)
Q Consensus 86 ~~~lvG~S~Gg~~a~~~a~~~p 107 (272)
.-.+.|-|.|+.+|..+|...+
T Consensus 31 ~d~i~GtSAGAl~aa~~a~g~~ 52 (245)
T cd07218 31 LNKISGASAGALAACCLLCDLP 52 (245)
T ss_pred CCeEEEEcHHHHHHHHHHhCCc
Confidence 3449999999999999987654
No 347
>TIGR02363 dhaK1 dihydroxyacetone kinase, DhaK subunit. Two types of dihydroxyacetone kinase (glycerone kinase) are described. In yeast and a few bacteria, e.g. Citrobacter freundii, the enzyme is a single chain that uses ATP as phosphoryl donor and is designated EC 2.7.1.29. By contract, E. coli and many other bacterial species have a multisubunit form (EC 2.7.1.-) with a phosphoprotein donor related to PTS transport proteins. This family represents the DhaK subunit of the latter type of dihydroxyacetone kinase, but it specifically excludes the DhaK paralog DhaK2 (TIGR02362) found in the same operon as DhaK and DhaK in the Firmicutes.
Probab=48.03 E-value=97 Score=24.49 Aligned_cols=36 Identities=25% Similarity=0.330 Sum_probs=28.2
Q ss_pred cCCCeEEEEecCCCcchh-----HHhhHHHHHhCCCeEEEE
Q 024134 14 KKQKHFVLVHGSNHGAWC-----WYKVKPRLEAAGHRVTAM 49 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~-----~~~~~~~l~~~g~~v~~~ 49 (272)
.+...+|++.|+|+.+.. ++.+.+.|.++|..+...
T Consensus 251 ~gd~v~vlvN~LG~ts~lEl~i~~~~v~~~L~~~gi~v~r~ 291 (329)
T TIGR02363 251 SGDRVIVLVNGMGATPLMELYIFYNDVQRLLEQRGVNVART 291 (329)
T ss_pred CCCeEEEEEeCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 445799999999998864 678888898888876554
No 348
>PLN02748 tRNA dimethylallyltransferase
Probab=47.87 E-value=1.1e+02 Score=25.60 Aligned_cols=77 Identities=13% Similarity=0.170 Sum_probs=46.8
Q ss_pred CCCeEEEEecCCCcchhHHhhHHHHHhC-CCeEEEEcC----CCCC--CCC----------------cccccccchhhch
Q 024134 15 KQKHFVLVHGSNHGAWCWYKVKPRLEAA-GHRVTAMDL----AASG--INM----------------KKIQDVRSFYEYN 71 (272)
Q Consensus 15 ~~~~vv~lhG~~~~~~~~~~~~~~l~~~-g~~v~~~d~----~G~G--~s~----------------~~~~~~~~~~~~~ 71 (272)
+++.+|+|-|-.+++.. .++-.|+.+ +..+|..|- +|.- ... ..+...++..++.
T Consensus 20 ~~~~~i~i~GptgsGKs--~la~~la~~~~~eii~~DsmQVYrgLdIgTaKpt~eE~~~VpHHLid~v~p~e~ysv~~F~ 97 (468)
T PLN02748 20 GKAKVVVVMGPTGSGKS--KLAVDLASHFPVEIINADSMQVYSGLDVLTNKVPLHEQKGVPHHLLGVISPSVEFTAKDFR 97 (468)
T ss_pred CCCCEEEEECCCCCCHH--HHHHHHHHhcCeeEEcCchheeeCCcchhcCCCCHHHHcCCCCeeEeecCCCCcCcHHHHH
Confidence 44568888888777764 234444433 467888772 3321 111 1122457889999
Q ss_pred HHHHHHHHHh-cCCCcEEEEEeC
Q 024134 72 EPLLEILASL-SADEKVILVGHS 93 (272)
Q Consensus 72 ~~~~~~i~~l-~~~~~~~lvG~S 93 (272)
++....|+.+ ...+..+|||-|
T Consensus 98 ~~A~~~I~~I~~rgk~PIlVGGT 120 (468)
T PLN02748 98 DHAVPLIEEILSRNGLPVIVGGT 120 (468)
T ss_pred HHHHHHHHHHHhcCCCeEEEcCh
Confidence 9999999887 234556777644
No 349
>PRK14481 dihydroxyacetone kinase subunit DhaK; Provisional
Probab=47.83 E-value=98 Score=24.50 Aligned_cols=36 Identities=25% Similarity=0.297 Sum_probs=28.1
Q ss_pred cCCCeEEEEecCCCcchh-----HHhhHHHHHhCCCeEEEE
Q 024134 14 KKQKHFVLVHGSNHGAWC-----WYKVKPRLEAAGHRVTAM 49 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~-----~~~~~~~l~~~g~~v~~~ 49 (272)
.+...+|++.|+|+.+.. ++.+.+.|.++|..+...
T Consensus 250 ~gd~v~lLvN~LG~ts~lEl~i~~~~v~~~L~~~gi~i~r~ 290 (331)
T PRK14481 250 AGDEVLVLVNGMGATPLMELYIVYNDVAELLEERGVTVARS 290 (331)
T ss_pred CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 445799999999998864 677888898888775554
No 350
>cd07204 Pat_PNPLA_like Patatin-like phospholipase domain containing protein family. Members of this family share a patain domain, initially discovered in potato tubers. PNPLA protein members show non-specific hydrolase activity with a variety of substrates such as triacylglycerol, phospholipids, and retinylesters. It contains the lipase consensus sequence (Gly-X-Ser-X-Gly). Nomenclature of PNPLA family could be misleading as some of the mammalian members of this family show hydrolase, but no phospholipase activity.
Probab=47.74 E-value=34 Score=25.57 Aligned_cols=21 Identities=19% Similarity=0.200 Sum_probs=18.2
Q ss_pred EEEEEeCcchHHHHHHHhhCc
Q 024134 87 VILVGHSFGGLSVALAADKFP 107 (272)
Q Consensus 87 ~~lvG~S~Gg~~a~~~a~~~p 107 (272)
-.++|-|.|+.++..++...+
T Consensus 33 ~~i~GtSAGAl~aa~~a~g~~ 53 (243)
T cd07204 33 RRIAGASAGAIVAAVVLCGVS 53 (243)
T ss_pred CEEEEEcHHHHHHHHHHhCCC
Confidence 389999999999999997654
No 351
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=47.41 E-value=1.3e+02 Score=23.23 Aligned_cols=58 Identities=26% Similarity=0.194 Sum_probs=31.0
Q ss_pred HhhHHHHHhCCCe--EEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcCCCcEEEEEeCcchHHH
Q 024134 33 YKVKPRLEAAGHR--VTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSADEKVILVGHSFGGLSV 99 (272)
Q Consensus 33 ~~~~~~l~~~g~~--v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~lvG~S~Gg~~a 99 (272)
...++.+.+.|.. =+.+|. |.|.+.. .++-. .+..-++.+......+++|+|-=..+.
T Consensus 166 ~~~i~~a~~~GI~~~~IilDP-GiGF~k~-------~~~n~-~ll~~l~~l~~lg~Pilvg~SRKsfig 225 (282)
T PRK11613 166 IEQIARCEAAGIAKEKLLLDP-GFGFGKN-------LSHNY-QLLARLAEFHHFNLPLLVGMSRKSMIG 225 (282)
T ss_pred HHHHHHHHHcCCChhhEEEeC-CCCcCCC-------HHHHH-HHHHHHHHHHhCCCCEEEEecccHHHH
Confidence 3444555567875 777885 6765432 11111 122233333234668899999655544
No 352
>cd01819 Patatin_and_cPLA2 Patatins and Phospholipases. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates. This family also includes the catalytic domain of cytosolic phospholipase A2 (PLA2; EC 3.1.1.4) hydrolyzes the sn-2-acyl ester bond of phospholipids to release arachidonic acid. At the active site, cPLA2 contains a serine nucleophile through which the catalytic mechanism is initiated. The active site is partially covered by a solvent-accessible flexible lid. cPLA2 displays interfacial activation as it exists in both "closed lid" and "open lid" forms.
Probab=47.31 E-value=35 Score=23.35 Aligned_cols=19 Identities=26% Similarity=0.093 Sum_probs=16.8
Q ss_pred CcEEEEEeCcchHHHHHHH
Q 024134 85 EKVILVGHSFGGLSVALAA 103 (272)
Q Consensus 85 ~~~~lvG~S~Gg~~a~~~a 103 (272)
..-++.|.|.|+.++..++
T Consensus 28 ~~~~~~G~SaGa~~~~~~~ 46 (155)
T cd01819 28 CVTYLAGTSGGAWVAATLY 46 (155)
T ss_pred CCCEEEEEcHHHHHHHHHh
Confidence 5667889999999999998
No 353
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=46.96 E-value=26 Score=20.64 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=18.0
Q ss_pred CCCcEEEEEeCcchHHHHHHHhhC
Q 024134 83 ADEKVILVGHSFGGLSVALAADKF 106 (272)
Q Consensus 83 ~~~~~~lvG~S~Gg~~a~~~a~~~ 106 (272)
+.+++.++|-|-|=.+|...+..+
T Consensus 38 GpK~VLViGaStGyGLAsRIa~aF 61 (78)
T PF12242_consen 38 GPKKVLVIGASTGYGLASRIAAAF 61 (78)
T ss_dssp S-SEEEEES-SSHHHHHHHHHHHH
T ss_pred CCceEEEEecCCcccHHHHHHHHh
Confidence 567899999999988887777654
No 354
>cd07221 Pat_PNPLA3 Patatin-like phospholipase domain containing protein 3. PNPLA3 is a triacylglycerol lipase that mediates triacylglycerol hydrolysis in adipocytes and is an indicator of the nutritional state. PNPLA3 is also known as adiponutrin (ADPN) or iPLA2-epsilon. Human adiponutrins are bound to the cell membrane of adipocytes and show transacylase, TG hydrolase, and PLA2 activity. This family includes patatin-like proteins: ADPN (adiponutrin) from mammals, PNPLA3 (Patatin-like phospholipase domain-containing protein 3), and iPLA2-epsilon (Calcium-independent phospholipase A2) from Homo sapiens.
Probab=46.91 E-value=35 Score=25.70 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=18.7
Q ss_pred cEEEEEeCcchHHHHHHHhhCc
Q 024134 86 KVILVGHSFGGLSVALAADKFP 107 (272)
Q Consensus 86 ~~~lvG~S~Gg~~a~~~a~~~p 107 (272)
.-.++|-|.|+.++..++...+
T Consensus 33 ~~~i~GtSAGAl~aa~~asg~~ 54 (252)
T cd07221 33 ARMFFGASAGALHCVTFLSGLP 54 (252)
T ss_pred CCEEEEEcHHHHHHHHHHhCCC
Confidence 4568999999999999987655
No 355
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=46.84 E-value=43 Score=22.43 Aligned_cols=30 Identities=27% Similarity=0.362 Sum_probs=18.0
Q ss_pred EEecCCCcchhHHhhHHHHHhCCCeEEEEcCCC
Q 024134 21 LVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAA 53 (272)
Q Consensus 21 ~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G 53 (272)
++-|.|..... +++....-||+|..+|.|.
T Consensus 2 ~I~GaG~va~a---l~~la~~lg~~v~v~d~r~ 31 (136)
T PF13478_consen 2 VIFGAGHVARA---LARLAALLGFRVTVVDPRP 31 (136)
T ss_dssp EEES-STCHHH---HHHHHHHCTEEEEEEES-C
T ss_pred EEEeCcHHHHH---HHHHHHhCCCEEEEEcCCc
Confidence 44555554443 4444445689999999983
No 356
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=46.76 E-value=54 Score=24.84 Aligned_cols=63 Identities=19% Similarity=0.297 Sum_probs=33.5
Q ss_pred hhHHHHHhCCCeEEEEcCCC-CCCCCcccccccchhhchHHHHHHHHHhc-CCCcEEEEEeCcchHHH
Q 024134 34 KVKPRLEAAGHRVTAMDLAA-SGINMKKIQDVRSFYEYNEPLLEILASLS-ADEKVILVGHSFGGLSV 99 (272)
Q Consensus 34 ~~~~~l~~~g~~v~~~d~~G-~G~s~~~~~~~~~~~~~~~~~~~~i~~l~-~~~~~~lvG~S~Gg~~a 99 (272)
..+..+++.|..++++.+-- .|.+-... ...++++.++.+.++.+... -.+.++++.| ||.++
T Consensus 161 e~A~~M~~AGaDiiv~H~GlT~gG~~Ga~-~~~sl~~a~~~~~~i~~aa~~v~~dii~l~h--GGPI~ 225 (268)
T PF09370_consen 161 EQARAMAEAGADIIVAHMGLTTGGSIGAK-TALSLEEAAERIQEIFDAARAVNPDIIVLCH--GGPIA 225 (268)
T ss_dssp HHHHHHHHHT-SEEEEE-SS-----------S--HHHHHHHHHHHHHHHHCC-TT-EEEEE--CTTB-
T ss_pred HHHHHHHHcCCCEEEecCCccCCCCcCcc-ccCCHHHHHHHHHHHHHHHHHhCCCeEEEEe--CCCCC
Confidence 34667778899999998631 22222222 23588888888888887662 2355677776 78754
No 357
>PRK11460 putative hydrolase; Provisional
Probab=46.56 E-value=1.1e+02 Score=22.51 Aligned_cols=42 Identities=19% Similarity=0.135 Sum_probs=26.0
Q ss_pred CCCeEEEEecCCCcchh---HHhhHHHHHhCCCeEEEEcCCCCCC
Q 024134 15 KQKHFVLVHGSNHGAWC---WYKVKPRLEAAGHRVTAMDLAASGI 56 (272)
Q Consensus 15 ~~~~vv~lhG~~~~~~~---~~~~~~~l~~~g~~v~~~d~~G~G~ 56 (272)
.+++++++||-....-. -..+.+.|.+.|..+....++|-|.
T Consensus 147 ~~~pvli~hG~~D~vvp~~~~~~~~~~L~~~g~~~~~~~~~~~gH 191 (232)
T PRK11460 147 TATTIHLIHGGEDPVIDVAHAVAAQEALISLGGDVTLDIVEDLGH 191 (232)
T ss_pred CCCcEEEEecCCCCccCHHHHHHHHHHHHHCCCCeEEEEECCCCC
Confidence 35688899987665433 2456677766676665555554443
No 358
>PRK00889 adenylylsulfate kinase; Provisional
Probab=46.54 E-value=65 Score=22.41 Aligned_cols=36 Identities=19% Similarity=0.135 Sum_probs=25.9
Q ss_pred CCeEEEEecCCCcchh--HHhhHHHHHhCCCeEEEEcC
Q 024134 16 QKHFVLVHGSNHGAWC--WYKVKPRLEAAGHRVTAMDL 51 (272)
Q Consensus 16 ~~~vv~lhG~~~~~~~--~~~~~~~l~~~g~~v~~~d~ 51 (272)
.+.++.+.|.++++.. -+.+...|...|..+..+|-
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~ 40 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDG 40 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcC
Confidence 3568888899888765 35566777667778877753
No 359
>PRK06849 hypothetical protein; Provisional
Probab=46.43 E-value=93 Score=25.20 Aligned_cols=73 Identities=16% Similarity=0.125 Sum_probs=41.5
Q ss_pred CCeEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCCCCCCCCc---cc------ccccchhhchHHHHHHHHHhcCCCc
Q 024134 16 QKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMK---KI------QDVRSFYEYNEPLLEILASLSADEK 86 (272)
Q Consensus 16 ~~~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~---~~------~~~~~~~~~~~~~~~~i~~l~~~~~ 86 (272)
+++||++ |.+ ...--.+++.|.+.|++|++.|......+.. .. ....+.+++.+.+.++++.. +. .
T Consensus 4 ~~~VLI~-G~~--~~~~l~iar~l~~~G~~Vi~~d~~~~~~~~~s~~~d~~~~~p~p~~d~~~~~~~L~~i~~~~-~i-d 78 (389)
T PRK06849 4 KKTVLIT-GAR--APAALELARLFHNAGHTVILADSLKYPLSRFSRAVDGFYTIPSPRWDPDAYIQALLSIVQRE-NI-D 78 (389)
T ss_pred CCEEEEe-CCC--cHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHhhhheEEeCCCCCCHHHHHHHHHHHHHHc-CC-C
Confidence 3455555 433 2233467888988999999998764332210 00 01124456778888888876 42 3
Q ss_pred EEEEEeC
Q 024134 87 VILVGHS 93 (272)
Q Consensus 87 ~~lvG~S 93 (272)
+++-+.+
T Consensus 79 ~vIP~~e 85 (389)
T PRK06849 79 LLIPTCE 85 (389)
T ss_pred EEEECCh
Confidence 4444443
No 360
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=46.23 E-value=55 Score=27.93 Aligned_cols=82 Identities=13% Similarity=0.043 Sum_probs=45.3
Q ss_pred eEEEEecCCCcchh-HHhhHHHHHhCCC-------eEEEEcCCCCCCCCccc--c---ccc---ch-hh--chHHHHHHH
Q 024134 18 HFVLVHGSNHGAWC-WYKVKPRLEAAGH-------RVTAMDLAASGINMKKI--Q---DVR---SF-YE--YNEPLLEIL 78 (272)
Q Consensus 18 ~vv~lhG~~~~~~~-~~~~~~~l~~~g~-------~v~~~d~~G~G~s~~~~--~---~~~---~~-~~--~~~~~~~~i 78 (272)
.-+++-|.|..+-- -+.+...+.+.|. +++.+|-.|-=..+... . ..+ +. .. -..++.+++
T Consensus 298 ~riv~~GAGsAgiGia~ll~~~m~~~Gls~eeA~~~i~~vD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~~~~~~L~e~v 377 (559)
T PTZ00317 298 QRIVFFGAGSAAIGVANNIADLAAEYGVTREEALKSFYLVDSKGLVTTTRGDKLAKHKVPFARTDISAEDSSLKTLEDVV 377 (559)
T ss_pred cEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCccccHHHHHHhccccccccccCCCHHHHH
Confidence 34455576655433 4455555656677 89999988832222111 0 000 00 00 023566677
Q ss_pred HHhcCCCcEEEEEeCc-chHHHHHH
Q 024134 79 ASLSADEKVILVGHSF-GGLSVALA 102 (272)
Q Consensus 79 ~~l~~~~~~~lvG~S~-Gg~~a~~~ 102 (272)
+. .+|-+++|-|- ||.+.-..
T Consensus 378 ~~---~KPtvLIG~S~~~g~Ft~ev 399 (559)
T PTZ00317 378 RF---VKPTALLGLSGVGGVFTEEV 399 (559)
T ss_pred hc---cCCCEEEEecCCCCCCCHHH
Confidence 64 48999999996 77654443
No 361
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=46.22 E-value=77 Score=22.11 Aligned_cols=55 Identities=11% Similarity=0.009 Sum_probs=36.3
Q ss_pred CcchhHHhhHHHHHhCCCeEEEEcCCCCCCCCccccc------ccchhhchHHHHHHHHHh
Q 024134 27 HGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQD------VRSFYEYNEPLLEILASL 81 (272)
Q Consensus 27 ~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~------~~~~~~~~~~~~~~i~~l 81 (272)
-+...|+.....+.+.|.+.+++-.-|++....-+.. .....+.++.+.+..+..
T Consensus 17 ~~~~~W~~~~~~m~~~GidtlIlq~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~ 77 (166)
T PF14488_consen 17 WTPAQWREEFRAMKAIGIDTLILQWTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKY 77 (166)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEEEeecCCcccCCccccCccccCCcccHHHHHHHHHHHc
Confidence 3456799999999999999998888887765422211 113345566666666655
No 362
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=46.20 E-value=1.2e+02 Score=22.33 Aligned_cols=60 Identities=17% Similarity=0.239 Sum_probs=32.0
Q ss_pred CCeEEEEecCCCcchh-HHhhHHHHHhCCC-eEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcCCCcEEEE
Q 024134 16 QKHFVLVHGSNHGAWC-WYKVKPRLEAAGH-RVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSADEKVILV 90 (272)
Q Consensus 16 ~~~vv~lhG~~~~~~~-~~~~~~~l~~~g~-~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~lv 90 (272)
..+|++.||...++.. |.-+-..|.+.|| .|+....-|+. .++++.+-++.. +.+.++|+
T Consensus 138 e~~vlmgHGt~h~s~~~YacLd~~~~~~~f~~v~v~~ve~yP--------------~~d~vi~~l~~~-~~~~v~L~ 199 (265)
T COG4822 138 EILVLMGHGTDHHSNAAYACLDHVLDEYGFDNVFVAAVEGYP--------------LVDTVIEYLRKN-GIKEVHLI 199 (265)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHHHhcCCCceEEEEecCCC--------------cHHHHHHHHHHc-CCceEEEe
Confidence 3477778887766655 3334344555666 55554433321 133444455554 56666554
No 363
>PLN02840 tRNA dimethylallyltransferase
Probab=46.19 E-value=1.4e+02 Score=24.71 Aligned_cols=77 Identities=10% Similarity=0.134 Sum_probs=44.7
Q ss_pred CCCeEEEEecCCCcchhHHhhHHHHHhC-CCeEEEEcC----CCCC--CCCc----------------ccccccchhhch
Q 024134 15 KQKHFVLVHGSNHGAWCWYKVKPRLEAA-GHRVTAMDL----AASG--INMK----------------KIQDVRSFYEYN 71 (272)
Q Consensus 15 ~~~~vv~lhG~~~~~~~~~~~~~~l~~~-g~~v~~~d~----~G~G--~s~~----------------~~~~~~~~~~~~ 71 (272)
.+..+|+|-|-.+++.. .++..|+++ +..++..|- +|.- ...+ .+...++..++.
T Consensus 19 ~~~~vi~I~GptgsGKT--tla~~La~~~~~~iis~Ds~qvYr~~~IgTaKpt~eE~~~V~Hhlidil~p~e~ySv~~F~ 96 (421)
T PLN02840 19 KKEKVIVISGPTGAGKS--RLALELAKRLNGEIISADSVQVYRGLDVGSAKPSLSERKEVPHHLIDILHPSDDYSVGAFF 96 (421)
T ss_pred cCCeEEEEECCCCCCHH--HHHHHHHHHCCCCeEeccccceecceeEEcCCCCHHHHcCCCeEeEeecCCCCceeHHHHH
Confidence 34567888887777654 233344433 346777774 2221 1111 112457888999
Q ss_pred HHHHHHHHHh-cCCCcEEEEEeC
Q 024134 72 EPLLEILASL-SADEKVILVGHS 93 (272)
Q Consensus 72 ~~~~~~i~~l-~~~~~~~lvG~S 93 (272)
++..+.++.+ ...+..+|||-+
T Consensus 97 ~~A~~~I~~i~~rgkiPIvVGGT 119 (421)
T PLN02840 97 DDARRATQDILNRGRVPIVAGGT 119 (421)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCc
Confidence 9999888887 233456677644
No 364
>cd07220 Pat_PNPLA2 Patatin-like phospholipase domain containing protein 2. PNPLA2 plays a key role in hydrolysis of stored triacylglecerols and is also known as adipose triglyceride lipase (ATGL). Members of this family share a patain domain, initially discovered in potato tubers. ATGL is expressed in white and brown adipose tissue in high mRNA levels. Mutations in PNPLA2 encoding adipose triglyceride lipase (ATGL) leads to neutral lipid storage disease (NLSD) which is characterized by the accumulation of triglycerides in multiple tissues. ATGL mutations are also commonly associated with severe forms of skeletal- and cardio-myopathy. This family includes patatin-like proteins: TTS-2.2 (transport-secretion protein 2.2), PNPLA2 (Patatin-like phospholipase domain-containing protein 2), and iPLA2-zeta (Calcium-independent phospholipase A2) from Homo sapiens.
Probab=45.53 E-value=36 Score=25.57 Aligned_cols=22 Identities=18% Similarity=0.150 Sum_probs=18.4
Q ss_pred cEEEEEeCcchHHHHHHHhhCc
Q 024134 86 KVILVGHSFGGLSVALAADKFP 107 (272)
Q Consensus 86 ~~~lvG~S~Gg~~a~~~a~~~p 107 (272)
.-.+.|-|.|+.++..++...+
T Consensus 37 ~~~i~G~SAGAl~aa~~a~g~~ 58 (249)
T cd07220 37 ARKIYGASAGALTATALVTGVC 58 (249)
T ss_pred CCeEEEEcHHHHHHHHHHcCCC
Confidence 4568899999999999987654
No 365
>TIGR03586 PseI pseudaminic acid synthase.
Probab=45.39 E-value=1.5e+02 Score=23.46 Aligned_cols=93 Identities=16% Similarity=0.046 Sum_probs=55.0
Q ss_pred CCCeEEEEecCCCcchhHHhhHHHHHhCCC-eEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcCCCcEEEEEeC
Q 024134 15 KQKHFVLVHGSNHGAWCWYKVKPRLEAAGH-RVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSADEKVILVGHS 93 (272)
Q Consensus 15 ~~~~vv~lhG~~~~~~~~~~~~~~l~~~g~-~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~lvG~S 93 (272)
.+.||++--|+ .+-..|...++.+.+.|. .++.... -|..|. ..++.-=.....++.. -.-+|.+..|+
T Consensus 133 ~gkPvilstG~-~t~~Ei~~Av~~i~~~g~~~i~LlhC----~s~YP~----~~~~~nL~~i~~lk~~-f~~pVG~SDHt 202 (327)
T TIGR03586 133 TGKPIIMSTGI-ATLEEIQEAVEACREAGCKDLVLLKC----TSSYPA----PLEDANLRTIPDLAER-FNVPVGLSDHT 202 (327)
T ss_pred cCCcEEEECCC-CCHHHHHHHHHHHHHCCCCcEEEEec----CCCCCC----CcccCCHHHHHHHHHH-hCCCEEeeCCC
Confidence 46788899998 578889999999987777 4555541 222221 1112211223344444 23677788999
Q ss_pred cchHHHHHHHhhCccceeeeeeee
Q 024134 94 FGGLSVALAADKFPHKISVAIFLT 117 (272)
Q Consensus 94 ~Gg~~a~~~a~~~p~~v~~lvl~~ 117 (272)
.|-.+++.+.+.-..-|.+-+..+
T Consensus 203 ~G~~~~~aAva~GA~iIEkH~tld 226 (327)
T TIGR03586 203 LGILAPVAAVALGACVIEKHFTLD 226 (327)
T ss_pred CchHHHHHHHHcCCCEEEeCCChh
Confidence 997766666654444444444333
No 366
>COG4667 Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=45.34 E-value=24 Score=26.65 Aligned_cols=40 Identities=25% Similarity=0.207 Sum_probs=27.9
Q ss_pred HHHHHHHHhcCCCcE-EEEEeCcchHHHHHHHhhCccceeeee
Q 024134 73 PLLEILASLSADEKV-ILVGHSFGGLSVALAADKFPHKISVAI 114 (272)
Q Consensus 73 ~~~~~i~~l~~~~~~-~lvG~S~Gg~~a~~~a~~~p~~v~~lv 114 (272)
-+.++++.- ..++ .++|.|+|+.-+..+.++.+.+-++++
T Consensus 29 VLD~fl~a~--~~~f~~~~GvSAGA~n~~aYls~Q~gra~~~~ 69 (292)
T COG4667 29 VLDEFLRAN--FNPFDLVVGVSAGALNLVAYLSKQRGRARRVI 69 (292)
T ss_pred HHHHHHHhc--cCCcCeeeeecHhHHhHHHHhhcCCchHHHHH
Confidence 344555333 3444 467999999999999988887766655
No 367
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=44.98 E-value=1.4e+02 Score=22.84 Aligned_cols=76 Identities=13% Similarity=0.174 Sum_probs=47.1
Q ss_pred cCCCeEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcCCCcEEE-EEe
Q 024134 14 KKQKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSADEKVIL-VGH 92 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~l-vG~ 92 (272)
+.+.||++=-|..++...|...++.+...|-.=+.+-.||.-.. + .|...+.--.....++.. -.-++.+ ..|
T Consensus 132 ~~gkPV~lk~G~~~s~~e~~~A~e~i~~~Gn~~i~L~~rG~~t~--~---~Y~~~~vdl~~i~~lk~~-~~~pV~~D~sH 205 (266)
T PRK13398 132 KTKKPILLKRGMSATLEEWLYAAEYIMSEGNENVVLCERGIRTF--E---TYTRNTLDLAAVAVIKEL-SHLPIIVDPSH 205 (266)
T ss_pred cCCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCeEEEEECCCCCC--C---CCCHHHHHHHHHHHHHhc-cCCCEEEeCCC
Confidence 34678999999999999999999999877774444455664111 1 122222222223344433 2356777 699
Q ss_pred Ccc
Q 024134 93 SFG 95 (272)
Q Consensus 93 S~G 95 (272)
|.|
T Consensus 206 s~G 208 (266)
T PRK13398 206 ATG 208 (266)
T ss_pred ccc
Confidence 998
No 368
>PRK04148 hypothetical protein; Provisional
Probab=44.95 E-value=45 Score=22.28 Aligned_cols=32 Identities=13% Similarity=0.092 Sum_probs=22.1
Q ss_pred CCCcEEEEEeCcchHHHHHHHhhCccceeeeeeeec
Q 024134 83 ADEKVILVGHSFGGLSVALAADKFPHKISVAIFLTA 118 (272)
Q Consensus 83 ~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~ 118 (272)
...++..||-.+|..+|..++.. . ..++.++-
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~-G---~~ViaIDi 47 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKES-G---FDVIVIDI 47 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHC-C---CEEEEEEC
Confidence 34679999999988888888843 2 24555553
No 369
>COG3946 VirJ Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion]
Probab=44.84 E-value=1.3e+02 Score=24.70 Aligned_cols=99 Identities=18% Similarity=0.090 Sum_probs=56.6
Q ss_pred eEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCCCCCCCCccc--ccccchhhchHHHHHHHHHh--cCCCcEEEEEeC
Q 024134 18 HFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKI--QDVRSFYEYNEPLLEILASL--SADEKVILVGHS 93 (272)
Q Consensus 18 ~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~--~~~~~~~~~~~~~~~~i~~l--~~~~~~~lvG~S 93 (272)
.++++.-..+-.+.-....+.+.++|.-|+-.|..++=.--... ...+.+.++-....+..... ......+|.|--
T Consensus 50 ~villSd~~G~~d~~~s~a~al~~~~Alv~~vd~~~ylaaL~~dd~ecvylisd~Ealsr~~Qr~a~~g~yr~PVl~g~g 129 (456)
T COG3946 50 LVILLSDEAGIGDQERSRADALLARGALVAPVDLGAYLAALGADDNECVYLISDFEALSREAQRAADLGVYRLPVLTGPG 129 (456)
T ss_pred eeEEEEcccChhhhhcchhHHHhhcCCeeeccccchhhhccccCCCcceEEehhHHHHhHHHHHHhhccCcccceEeecC
Confidence 45555544444555455677777788888888887664332211 12233333222222222222 134567888999
Q ss_pred cchHHHHHHHhhCccc-eeeeeee
Q 024134 94 FGGLSVALAADKFPHK-ISVAIFL 116 (272)
Q Consensus 94 ~Gg~~a~~~a~~~p~~-v~~lvl~ 116 (272)
-||.+++..+++-|+. +.+.+-+
T Consensus 130 ~Gg~~A~asaaqSp~atlag~Vsl 153 (456)
T COG3946 130 QGGTLAYASAAQSPDATLAGAVSL 153 (456)
T ss_pred CCcHHHHHHHhhChhhhhcCccCC
Confidence 9999999999887753 3444433
No 370
>COG4551 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=44.40 E-value=66 Score=19.74 Aligned_cols=27 Identities=22% Similarity=0.501 Sum_probs=18.7
Q ss_pred CCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHH
Q 024134 42 AGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILAS 80 (272)
Q Consensus 42 ~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~ 80 (272)
+|-+|++.|.| .+++-+--.+.++++.
T Consensus 74 k~kRviCLDIP------------Ddy~yMq~eLi~lLkr 100 (109)
T COG4551 74 KGKRVICLDIP------------DDYEYMQPELIDLLKR 100 (109)
T ss_pred cCCeEEEEeCC------------chHhhcCHHHHHHHHH
Confidence 57899999987 3555555566666654
No 371
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=44.38 E-value=69 Score=22.25 Aligned_cols=39 Identities=21% Similarity=0.218 Sum_probs=32.3
Q ss_pred CeEEEEecCCCcchh--HHhhHHHHHhCCCeEEEEcCCCCC
Q 024134 17 KHFVLVHGSNHGAWC--WYKVKPRLEAAGHRVTAMDLAASG 55 (272)
Q Consensus 17 ~~vv~lhG~~~~~~~--~~~~~~~l~~~g~~v~~~d~~G~G 55 (272)
+.|+=+-|+-.++.. -..+++.|..+||+|-++-..+|+
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~hh~ 42 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHAHHD 42 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEecCCC
Confidence 457777788766654 688999999999999999999998
No 372
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=44.17 E-value=41 Score=26.12 Aligned_cols=19 Identities=11% Similarity=0.135 Sum_probs=16.7
Q ss_pred cCCCeEEEEecCCCcchhH
Q 024134 14 KKQKHFVLVHGSNHGAWCW 32 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~~ 32 (272)
..+|.++=+||+.+++..|
T Consensus 107 p~KPLvLSfHG~tGTGKN~ 125 (344)
T KOG2170|consen 107 PRKPLVLSFHGWTGTGKNY 125 (344)
T ss_pred CCCCeEEEecCCCCCchhH
Confidence 6678888899999999887
No 373
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=44.00 E-value=85 Score=20.15 Aligned_cols=31 Identities=19% Similarity=0.235 Sum_probs=20.9
Q ss_pred EEEecCCCcchhH--HhhHHHHHhCCCeEEEEcCCC
Q 024134 20 VLVHGSNHGAWCW--YKVKPRLEAAGHRVTAMDLAA 53 (272)
Q Consensus 20 v~lhG~~~~~~~~--~~~~~~l~~~g~~v~~~d~~G 53 (272)
|++||-.+++... +.++..+ |+.++.+|..-
T Consensus 1 ill~G~~G~GKT~l~~~la~~l---~~~~~~i~~~~ 33 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL---GFPFIEIDGSE 33 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT---TSEEEEEETTH
T ss_pred CEEECcCCCCeeHHHHHHHhhc---ccccccccccc
Confidence 6899998888764 2333333 57888888653
No 374
>PRK11468 dihydroxyacetone kinase subunit DhaK; Provisional
Probab=43.93 E-value=90 Score=24.94 Aligned_cols=35 Identities=17% Similarity=0.262 Sum_probs=27.5
Q ss_pred CCCeEEEEecCCCcchh-----HHhhHHHHHhCCCeEEEE
Q 024134 15 KQKHFVLVHGSNHGAWC-----WYKVKPRLEAAGHRVTAM 49 (272)
Q Consensus 15 ~~~~vv~lhG~~~~~~~-----~~~~~~~l~~~g~~v~~~ 49 (272)
+...+|++.|+|+.+.. ++.+.+.|.++|..+...
T Consensus 275 gd~v~vLVNgLG~t~~~El~i~~~~v~~~L~~~gi~v~r~ 314 (356)
T PRK11468 275 GDRVIALVNNLGATPLSELYGVYNRLATRCEQAGLTIERN 314 (356)
T ss_pred CCeEEEEEeCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEe
Confidence 34689999999998865 577888898888776554
No 375
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=43.84 E-value=57 Score=19.40 Aligned_cols=31 Identities=23% Similarity=0.281 Sum_probs=21.3
Q ss_pred EEEecCCCcchh--HHhhHHHHHhCCCeEEEEc
Q 024134 20 VLVHGSNHGAWC--WYKVKPRLEAAGHRVTAMD 50 (272)
Q Consensus 20 v~lhG~~~~~~~--~~~~~~~l~~~g~~v~~~d 50 (272)
+++-|.++.+.. -..++..|++.|+++..+|
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 344455444443 3577888888899999998
No 376
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=43.78 E-value=1.3e+02 Score=22.21 Aligned_cols=32 Identities=31% Similarity=0.334 Sum_probs=21.3
Q ss_pred EEEecCCCcchhHHhhHHHHHhCCCeEEEEcCCC
Q 024134 20 VLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAA 53 (272)
Q Consensus 20 v~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G 53 (272)
+++-|..+ ..=..+++.|.++|++|+..+...
T Consensus 11 vlItGas~--~iG~~la~~l~~~G~~v~~~~~~~ 42 (252)
T PRK08220 11 VWVTGAAQ--GIGYAVALAFVEAGAKVIGFDQAF 42 (252)
T ss_pred EEEeCCCc--hHHHHHHHHHHHCCCEEEEEecch
Confidence 44555433 333457788888999999998643
No 377
>KOG2872 consensus Uroporphyrinogen decarboxylase [Coenzyme transport and metabolism]
Probab=43.58 E-value=65 Score=24.80 Aligned_cols=29 Identities=21% Similarity=0.336 Sum_probs=23.5
Q ss_pred CeEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCC
Q 024134 17 KHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLA 52 (272)
Q Consensus 17 ~~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~ 52 (272)
|-|+|.-|.++ ..+.|+..||.|+..|+-
T Consensus 253 Pmi~fakG~g~-------~Le~l~~tG~DVvgLDWT 281 (359)
T KOG2872|consen 253 PMILFAKGSGG-------ALEELAQTGYDVVGLDWT 281 (359)
T ss_pred ceEEEEcCcch-------HHHHHHhcCCcEEeeccc
Confidence 77888888653 467788899999999984
No 378
>COG0331 FabD (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]
Probab=43.57 E-value=29 Score=27.07 Aligned_cols=22 Identities=32% Similarity=0.389 Sum_probs=18.7
Q ss_pred CCCcEEEEEeCcchHHHHHHHh
Q 024134 83 ADEKVILVGHSFGGLSVALAAD 104 (272)
Q Consensus 83 ~~~~~~lvG~S~Gg~~a~~~a~ 104 (272)
+.++.++.|||+|=..|+..+.
T Consensus 83 ~~~p~~~aGHSlGEysAl~~ag 104 (310)
T COG0331 83 GVKPDFVAGHSLGEYSALAAAG 104 (310)
T ss_pred CCCCceeecccHhHHHHHHHcc
Confidence 4778899999999998888775
No 379
>PRK06696 uridine kinase; Validated
Probab=43.11 E-value=79 Score=23.17 Aligned_cols=41 Identities=10% Similarity=0.066 Sum_probs=29.6
Q ss_pred cCCCeEEEEecCCCcchhH--HhhHHHHHhCCCeEEEEcCCCC
Q 024134 14 KKQKHFVLVHGSNHGAWCW--YKVKPRLEAAGHRVTAMDLAAS 54 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~~--~~~~~~l~~~g~~v~~~d~~G~ 54 (272)
.++|.||.|-|.++++... ..+...|...|..++.+.+-++
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf 61 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDF 61 (223)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccc
Confidence 5678999999998888663 5667777666777777543333
No 380
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=43.06 E-value=1.1e+02 Score=25.83 Aligned_cols=71 Identities=15% Similarity=0.210 Sum_probs=51.4
Q ss_pred cCCCeEEEEecCCCcc--hhHHhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHH-HHHHHHHhcCCCcEEEE
Q 024134 14 KKQKHFVLVHGSNHGA--WCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEP-LLEILASLSADEKVILV 90 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~--~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~-~~~~i~~l~~~~~~~lv 90 (272)
...|.||++-|+-+++ ..-..+...|..+||+|+++--| +-++...+ +-.+-++++..+.+.+.
T Consensus 296 ~~~~vlivfeG~DaAGKgg~I~rl~~~ldPrg~~v~~~~~P-------------t~~E~~~~~lwRf~~~lP~~G~i~iF 362 (493)
T TIGR03708 296 RKRSLVLVFEGWDAAGKGGAIRRVTEALDARQYRVVPIAAP-------------TDEEKAQHYLWRFWRHIPRRGRITIF 362 (493)
T ss_pred CCCCEEEEEEcccCCCCcHHHHHHHhhcCCCeeEEEeCCCc-------------CHHHHcCcHHHHHHHhCCCCCeEEEE
Confidence 5678999999997665 34678888898899999998765 33333333 55777777666778888
Q ss_pred EeCcchH
Q 024134 91 GHSFGGL 97 (272)
Q Consensus 91 G~S~Gg~ 97 (272)
=-|+=+-
T Consensus 363 dRSwY~~ 369 (493)
T TIGR03708 363 DRSWYGR 369 (493)
T ss_pred cCCccCC
Confidence 7776443
No 381
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=42.85 E-value=24 Score=29.00 Aligned_cols=42 Identities=14% Similarity=0.105 Sum_probs=25.3
Q ss_pred CceeEEEEeCCCCCccHHHHHHHHhcCCCceEEEecCCCcccccC
Q 024134 211 SVKRDFVGSDKDNCIPKEFQQWMIQNNPVNEVMAIKGADHMAMLS 255 (272)
Q Consensus 211 ~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~ 255 (272)
...|++..|+.|++........ .-.....++++|++|+.-+-
T Consensus 376 ~tnviFtNG~~DPW~~lgv~~~---~~~~~~~~~I~g~~Hc~Dl~ 417 (434)
T PF05577_consen 376 ATNVIFTNGELDPWRALGVTSD---SSDSVPAIVIPGGAHCSDLY 417 (434)
T ss_dssp --SEEEEEETT-CCGGGS--S----SSSSEEEEEETT--TTGGGS
T ss_pred CCeEEeeCCCCCCcccccCCCC---CCCCcccEEECCCeeecccc
Confidence 3579999999999987663322 22345667899999986553
No 382
>PRK07933 thymidylate kinase; Validated
Probab=42.84 E-value=85 Score=22.90 Aligned_cols=39 Identities=18% Similarity=0.302 Sum_probs=29.2
Q ss_pred EEEEecCCCcchh--HHhhHHHHHhCCCeEEEEcCCCCCCC
Q 024134 19 FVLVHGSNHGAWC--WYKVKPRLEAAGHRVTAMDLAASGIN 57 (272)
Q Consensus 19 vv~lhG~~~~~~~--~~~~~~~l~~~g~~v~~~d~~G~G~s 57 (272)
+|.+=|.-+++.. -..+.+.|..+|+.|+....|++|.+
T Consensus 2 ~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~~~P~~~~~ 42 (213)
T PRK07933 2 LIAIEGVDGAGKRTLTEALRAALEARGRSVATLAFPRYGRS 42 (213)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCC
Confidence 4556676555543 56788999889999999999977754
No 383
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=42.79 E-value=2e+02 Score=23.94 Aligned_cols=68 Identities=21% Similarity=0.219 Sum_probs=38.3
Q ss_pred HHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcCCCcEEEEEeCcchHHHHHHHhhCcc--ceeeeeee
Q 024134 39 LEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSADEKVILVGHSFGGLSVALAADKFPH--KISVAIFL 116 (272)
Q Consensus 39 l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~lvG~S~Gg~~a~~~a~~~p~--~v~~lvl~ 116 (272)
+...+|.++.+|.+|....+ +.+.+.+..+.+.+ ....+++|--++-|.-+...|..+-+ .+.++|+.
T Consensus 178 ~~~~~~DvVIIDTaGr~~~d---------~~l~~eL~~i~~~~-~p~e~lLVvda~tgq~~~~~a~~f~~~v~i~giIlT 247 (428)
T TIGR00959 178 AKENGFDVVIVDTAGRLQID---------EELMEELAAIKEIL-NPDEILLVVDAMTGQDAVNTAKTFNERLGLTGVVLT 247 (428)
T ss_pred HHhcCCCEEEEeCCCccccC---------HHHHHHHHHHHHhh-CCceEEEEEeccchHHHHHHHHHHHhhCCCCEEEEe
Confidence 33467888999988764321 23444555555555 44556666555555555555554432 35666644
No 384
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=42.42 E-value=44 Score=22.54 Aligned_cols=37 Identities=30% Similarity=0.413 Sum_probs=25.3
Q ss_pred eEEEEecCCC-cc--h-hHHhhHHHHHhCCCeEEEEcCCCC
Q 024134 18 HFVLVHGSNH-GA--W-CWYKVKPRLEAAGHRVTAMDLAAS 54 (272)
Q Consensus 18 ~vv~lhG~~~-~~--~-~~~~~~~~l~~~g~~v~~~d~~G~ 54 (272)
.|++|.|... ++ . .-+.+.+.+.+.|+.+-.+|++.+
T Consensus 2 kilii~gS~r~~~~t~~l~~~~~~~l~~~g~e~~~i~l~~~ 42 (152)
T PF03358_consen 2 KILIINGSPRKNSNTRKLAEAVAEQLEEAGAEVEVIDLADY 42 (152)
T ss_dssp EEEEEESSSSTTSHHHHHHHHHHHHHHHTTEEEEEEECTTS
T ss_pred EEEEEECcCCCCCHHHHHHHHHHHHHHHcCCEEEEEecccc
Confidence 3777888763 22 2 235566777777899999998865
No 385
>COG5441 Uncharacterized conserved protein [Function unknown]
Probab=41.77 E-value=1.7e+02 Score=22.85 Aligned_cols=97 Identities=16% Similarity=0.159 Sum_probs=59.8
Q ss_pred eEEEEecCCCcchh-HHhhHHHHHhCCCeEEEEcCCCCCCCCcccc----------------------cccchhhchHHH
Q 024134 18 HFVLVHGSNHGAWC-WYKVKPRLEAAGHRVTAMDLAASGINMKKIQ----------------------DVRSFYEYNEPL 74 (272)
Q Consensus 18 ~vv~lhG~~~~~~~-~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~----------------------~~~~~~~~~~~~ 74 (272)
..|++-|.+.+... ...+.+.....|-.++.+|.---+......+ ....+..+++.+
T Consensus 3 krIyVvgT~DTKg~EL~ylad~I~~aG~~~v~vDvs~~~~~~~~~dis~~~VA~~hp~~~qAv~~~~Drg~AiaaMa~A~ 82 (401)
T COG5441 3 KRIYVVGTADTKGEELAYLADLIEAAGGSPVLVDVSTLRNPTSEVDISAEDVAGAHPGGRQAVLDGNDRGSAIAAMAEAF 82 (401)
T ss_pred ceEEEEecCCCcchhHHHHHHHHHHcCCCeEEEEeeccCCCCCCcccCHHHHhhhCCCcceeEeccCchhHHHHHHHHHH
Confidence 45677777766644 5566677777899999999754322211110 011223344444
Q ss_pred HHHHHHhcCCCcEEEEEeCcchHHHHHHHhhCccceeeee
Q 024134 75 LEILASLSADEKVILVGHSFGGLSVALAADKFPHKISVAI 114 (272)
Q Consensus 75 ~~~i~~l~~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lv 114 (272)
..++.+-.+..-++-+|-|.|..++.-.+...|--+-+++
T Consensus 83 ~r~l~sR~dV~gmig~GGsgGT~lit~~m~~LPlgvPK~m 122 (401)
T COG5441 83 VRFLSSRGDVAGMIGMGGSGGTALITPAMRRLPLGVPKVM 122 (401)
T ss_pred HHHhhcccchhheeecCCCcchHhhhhHHHhcCcCCccee
Confidence 4444444455567788999999999988888886555544
No 386
>PTZ00445 p36-lilke protein; Provisional
Probab=41.74 E-value=1.2e+02 Score=22.25 Aligned_cols=66 Identities=20% Similarity=0.138 Sum_probs=38.9
Q ss_pred hhHHhhHHHHHhCCCeEEEEcCCCC------CCCCccc-ccccchhhchHHHHHHHHHh-cCCCcEEEEEeCcc
Q 024134 30 WCWYKVKPRLEAAGHRVTAMDLAAS------GINMKKI-QDVRSFYEYNEPLLEILASL-SADEKVILVGHSFG 95 (272)
Q Consensus 30 ~~~~~~~~~l~~~g~~v~~~d~~G~------G~s~~~~-~~~~~~~~~~~~~~~~i~~l-~~~~~~~lvG~S~G 95 (272)
+.-+.+.+.|.+.|.++++.|+-.- |....+. ....-......++..+++.+ ...=++++|-+|==
T Consensus 29 ~~~~~~v~~L~~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTfSd~ 102 (219)
T PTZ00445 29 ESADKFVDLLNECGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTFSDK 102 (219)
T ss_pred HHHHHHHHHHHHcCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEccch
Confidence 3456678889999999999998532 1111111 00011122345566777776 23467888888854
No 387
>KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism]
Probab=41.27 E-value=71 Score=25.39 Aligned_cols=85 Identities=13% Similarity=0.245 Sum_probs=51.7
Q ss_pred CeEEEEecCCCcch-------hHHhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcCCCcEEE
Q 024134 17 KHFVLVHGSNHGAW-------CWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSADEKVIL 89 (272)
Q Consensus 17 ~~vv~lhG~~~~~~-------~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~l 89 (272)
..+|++|+...++. .|+.+...+.++ -.+-.+|+...|..++ +.+..+..+.-+++. ..-++
T Consensus 198 gs~ilLhaCaHNPTGvDPt~eqw~ki~~~~~~k-~~~pffDmAYQGfaSG------~~d~DA~avR~F~~~----g~~~~ 266 (427)
T KOG1411|consen 198 GSIILLHACAHNPTGVDPTKEQWEKISDLIKEK-NLLPFFDMAYQGFASG------DLDKDAQAVRLFVED----GHEIL 266 (427)
T ss_pred CcEEEeehhhcCCCCCCccHHHHHHHHHHhhhc-cccchhhhhhcccccC------CchhhHHHHHHHHHc----CCceE
Confidence 36899998776664 788888877766 4666778877776543 333444445555442 23334
Q ss_pred EEeCcchHHHHHHHhhCccceeeeeeee
Q 024134 90 VGHSFGGLSVALAADKFPHKISVAIFLT 117 (272)
Q Consensus 90 vG~S~Gg~~a~~~a~~~p~~v~~lvl~~ 117 (272)
+..|+.-.++ .|.+||.++-.++
T Consensus 267 laQSyAKNMG-----LYgERvGa~svvc 289 (427)
T KOG1411|consen 267 LAQSYAKNMG-----LYGERVGALSVVC 289 (427)
T ss_pred eehhhhhhcc-----hhhhccceeEEEe
Confidence 4455433322 3667888776665
No 388
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=41.07 E-value=78 Score=25.79 Aligned_cols=43 Identities=19% Similarity=0.237 Sum_probs=37.8
Q ss_pred CCCeEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCCCCCCC
Q 024134 15 KQKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGIN 57 (272)
Q Consensus 15 ~~~~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s 57 (272)
.+.+.|-+-=+|.+...-....+.|.+.||.|++|.--|.|..
T Consensus 183 ~~kp~I~iTmfGvTTp~V~~~~~~Le~~G~Ev~VFHAtG~GG~ 225 (403)
T PF06792_consen 183 EDKPLIGITMFGVTTPCVDAIRERLEEEGYEVLVFHATGTGGR 225 (403)
T ss_pred CCCcEEEEECCCCcHHHHHHHHHHHHhcCCeEEEEcCCCCchH
Confidence 4567888888888888888999999999999999999999864
No 389
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=40.82 E-value=1.6e+02 Score=24.33 Aligned_cols=66 Identities=21% Similarity=0.140 Sum_probs=44.0
Q ss_pred HhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcCCCcEEEEEeCcchHHHHHHHhhCccceee
Q 024134 33 YKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSADEKVILVGHSFGGLSVALAADKFPHKISV 112 (272)
Q Consensus 33 ~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~ 112 (272)
...+..|.+.|.+|+++- ..+.+++-..+...++.. +.+|-+++ .-||.++..+...+|+..+.
T Consensus 75 d~vaa~l~~~gi~v~a~~-------------~~~~~~y~~~~~~~l~~~-~~~p~~i~--DdGg~~~~~~~~~~~~~~~~ 138 (413)
T cd00401 75 DHAAAAIAAAGIPVFAWK-------------GETLEEYWWCIEQALKFP-DGEPNMIL--DDGGDLTLLIHKKHPELLPG 138 (413)
T ss_pred HHHHHHHHhcCceEEEEc-------------CCCHHHHHHHHHHHHhcc-CCCCcEEE--ecchHHHHHHHhhhhhhhhc
Confidence 345666666666666642 136667777777777765 44666666 88999988888777765555
Q ss_pred ee
Q 024134 113 AI 114 (272)
Q Consensus 113 lv 114 (272)
++
T Consensus 139 ~~ 140 (413)
T cd00401 139 IR 140 (413)
T ss_pred cE
Confidence 44
No 390
>PF01734 Patatin: Patatin-like phospholipase This Prosite family is a subset of the Pfam family; InterPro: IPR002641 This domain is structurally and functionally related to the animal cytosolic phospholipase A2. This domain is found in the patatin glycoproteins from the total soluble protein in potato tubers []. Patatin is a storage protein but it also has the enzymatic activity of lipid acyl hydrolase, catalysing the cleavage of fatty acids from membrane lipids [].; GO: 0006629 lipid metabolic process; PDB: 3TU3_B 4AKX_B 1OXW_A.
Probab=40.76 E-value=34 Score=23.91 Aligned_cols=23 Identities=30% Similarity=0.336 Sum_probs=18.2
Q ss_pred CCCcEEEEEeCcchHHHHHHHhh
Q 024134 83 ADEKVILVGHSFGGLSVALAADK 105 (272)
Q Consensus 83 ~~~~~~lvG~S~Gg~~a~~~a~~ 105 (272)
....-.+.|-|.||.+++.++..
T Consensus 25 ~~~~d~i~GtS~Gal~a~~~~~~ 47 (204)
T PF01734_consen 25 GERFDVISGTSAGALNAALLALG 47 (204)
T ss_dssp CCT-SEEEEECCHHHHHHHHHTC
T ss_pred CCCccEEEEcChhhhhHHHHHhC
Confidence 45566789999999999888865
No 391
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=40.73 E-value=68 Score=22.09 Aligned_cols=44 Identities=18% Similarity=0.192 Sum_probs=26.8
Q ss_pred CCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcCCCcEEEEEeCcc
Q 024134 42 AGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSADEKVILVGHSFG 95 (272)
Q Consensus 42 ~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~lvG~S~G 95 (272)
.+-.++++|-.|- ..+-+++++.+..+...- ..+-+++||-|.|
T Consensus 66 ~~~~~i~Ld~~Gk---------~~sS~~fA~~l~~~~~~g-~~~i~F~IGG~~G 109 (155)
T PF02590_consen 66 PNDYVILLDERGK---------QLSSEEFAKKLERWMNQG-KSDIVFIIGGADG 109 (155)
T ss_dssp TTSEEEEE-TTSE---------E--HHHHHHHHHHHHHTT-S-EEEEEE-BTTB
T ss_pred CCCEEEEEcCCCc---------cCChHHHHHHHHHHHhcC-CceEEEEEecCCC
Confidence 4567888887753 256677777777776643 2344678899988
No 392
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.61 E-value=1.7e+02 Score=24.75 Aligned_cols=75 Identities=15% Similarity=0.126 Sum_probs=47.7
Q ss_pred EEEecCCCcchhH-HhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcCCCcEEEEEeCcchHH
Q 024134 20 VLVHGSNHGAWCW-YKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSADEKVILVGHSFGGLS 98 (272)
Q Consensus 20 v~lhG~~~~~~~~-~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~lvG~S~Gg~~ 98 (272)
+|=-|+|.+...- ..-+.+-..+||.|+.+|-.|.-... +.+-..+..+++.- ....++.||--+=|.=
T Consensus 442 lfekGYgkd~a~vak~AI~~a~~~gfDVvLiDTAGR~~~~---------~~lm~~l~k~~~~~-~pd~i~~vgealvg~d 511 (587)
T KOG0781|consen 442 LFEKGYGKDAAGVAKEAIQEARNQGFDVVLIDTAGRMHNN---------APLMTSLAKLIKVN-KPDLILFVGEALVGND 511 (587)
T ss_pred HHhhhcCCChHHHHHHHHHHHHhcCCCEEEEeccccccCC---------hhHHHHHHHHHhcC-CCceEEEehhhhhCcH
Confidence 4445666554432 33345555689999999988754432 33444566666665 6778888998877775
Q ss_pred HHHHHh
Q 024134 99 VALAAD 104 (272)
Q Consensus 99 a~~~a~ 104 (272)
++.-+.
T Consensus 512 sv~q~~ 517 (587)
T KOG0781|consen 512 SVDQLK 517 (587)
T ss_pred HHHHHH
Confidence 555443
No 393
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=40.49 E-value=79 Score=23.08 Aligned_cols=15 Identities=27% Similarity=0.366 Sum_probs=11.7
Q ss_pred CCCcEEEEEeCcchH
Q 024134 83 ADEKVILVGHSFGGL 97 (272)
Q Consensus 83 ~~~~~~lvG~S~Gg~ 97 (272)
..-..+++-||+||.
T Consensus 122 d~~~~~~i~~slgGG 136 (216)
T PF00091_consen 122 DSLDGFFIVHSLGGG 136 (216)
T ss_dssp TTESEEEEEEESSSS
T ss_pred cccccceecccccce
Confidence 556778888999886
No 394
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=40.34 E-value=1e+02 Score=23.84 Aligned_cols=73 Identities=14% Similarity=0.230 Sum_probs=40.0
Q ss_pred EEEEecCCCcchhHHhhHHHHHhC-CCeEEEEcCC----C--CCCCCc----------------ccccccchhhchHHHH
Q 024134 19 FVLVHGSNHGAWCWYKVKPRLEAA-GHRVTAMDLA----A--SGINMK----------------KIQDVRSFYEYNEPLL 75 (272)
Q Consensus 19 vv~lhG~~~~~~~~~~~~~~l~~~-g~~v~~~d~~----G--~G~s~~----------------~~~~~~~~~~~~~~~~ 75 (272)
||++-|-.+++.. .++..|++. +..++..|-. | .|...+ .....++..++..+..
T Consensus 1 vi~i~G~t~~GKs--~la~~l~~~~~~~iis~Ds~qvY~~l~IgTakp~~~e~~~v~hhlid~~~~~~~~~v~~f~~~a~ 78 (287)
T TIGR00174 1 VIFIMGPTAVGKS--QLAIQLAKKLNAEIISVDSMQIYKGMDIGTAKPSLQEREGIPHHLIDILDPSESYSAADFQTLAL 78 (287)
T ss_pred CEEEECCCCCCHH--HHHHHHHHhCCCcEEEechhheeeeccccCCCCCHHHHcCccEEEEEEechhheEcHHHHHHHHH
Confidence 3566666655554 244445433 5677877653 2 111111 1113467788888888
Q ss_pred HHHHHh-cCCCcEEEEEeC
Q 024134 76 EILASL-SADEKVILVGHS 93 (272)
Q Consensus 76 ~~i~~l-~~~~~~~lvG~S 93 (272)
+.++.+ ...+.++++|-|
T Consensus 79 ~~i~~~~~~g~~pi~vGGT 97 (287)
T TIGR00174 79 NAIADITARGKIPLLVGGT 97 (287)
T ss_pred HHHHHHHhCCCCEEEEcCc
Confidence 888876 233456777644
No 395
>COG1576 Uncharacterized conserved protein [Function unknown]
Probab=39.79 E-value=99 Score=21.27 Aligned_cols=56 Identities=18% Similarity=0.210 Sum_probs=31.1
Q ss_pred hHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcCCCcEEEEEeCcchHHHHHH
Q 024134 35 VKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSADEKVILVGHSFGGLSVALA 102 (272)
Q Consensus 35 ~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~lvG~S~Gg~~a~~~ 102 (272)
+.+.+. .|-.|++.|.+|-- .+-+++++.+..+-+. +.+=.+++|-|.|=--++..
T Consensus 60 il~~i~-~~~~vi~Ld~~Gk~---------~sSe~fA~~l~~~~~~--G~~i~f~IGG~~Gl~~~~~~ 115 (155)
T COG1576 60 ILAAIP-KGSYVVLLDIRGKA---------LSSEEFADFLERLRDD--GRDISFLIGGADGLSEAVKA 115 (155)
T ss_pred HHHhcC-CCCeEEEEecCCCc---------CChHHHHHHHHHHHhc--CCeEEEEEeCcccCCHHHHH
Confidence 344443 46789999988632 3445555554444331 32235577888874433333
No 396
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=39.75 E-value=37 Score=22.33 Aligned_cols=33 Identities=15% Similarity=0.262 Sum_probs=21.5
Q ss_pred EEEecCCCcchhHHhhHHHHHhCCCeEEEEcCC
Q 024134 20 VLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLA 52 (272)
Q Consensus 20 v~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~ 52 (272)
+...|..++-.-+-.+...|.++|++|...-.+
T Consensus 3 i~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~ 35 (139)
T PF03033_consen 3 IATGGTRGHVYPFLALARALRRRGHEVRLATPP 35 (139)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHTT-EEEEEETG
T ss_pred EEEcCChhHHHHHHHHHHHHhccCCeEEEeecc
Confidence 344454555555678889999999999765443
No 397
>TIGR02362 dhaK1b probable dihydroxyacetone kinase DhaK1b subunit. Two types of dihydroxyacetone kinase (glycerone kinase) are described. In yeast and a few bacteria, e.g. Citrobacter freundii, the enzyme is a single chain that uses ATP as phosphoryl donor and is designated EC 2.7.1.29. By contract, E. coli and many other bacterial species have a multisubunit form with a phosphoprotein donor related to PTS transport proteins. This family represents a protein, unique to the Firmicutes (low GC Gram-positives), that appears to be a divergent second copy of the K subunit of that complex; its gene is always found in operons with the other three proteins of the complex.
Probab=39.58 E-value=1.1e+02 Score=24.24 Aligned_cols=36 Identities=14% Similarity=0.011 Sum_probs=28.4
Q ss_pred cCCCeEEEEecCCCcchh-----HHhhHHHHHhCCCeEEEE
Q 024134 14 KKQKHFVLVHGSNHGAWC-----WYKVKPRLEAAGHRVTAM 49 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~-----~~~~~~~l~~~g~~v~~~ 49 (272)
.+...+|++.|+|+++.. ++.+.+.|.++|..+...
T Consensus 247 ~gd~v~vlvN~LG~t~~lEl~i~~~~v~~~L~~~gi~v~r~ 287 (326)
T TIGR02362 247 ADDHYAVLVNNLGGTTPMEQMVFNNDVHELLALEALHLPFI 287 (326)
T ss_pred CCCEEEEEecCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEe
Confidence 445799999999999864 678889998888876553
No 398
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=39.42 E-value=1.8e+02 Score=22.49 Aligned_cols=32 Identities=9% Similarity=0.116 Sum_probs=23.6
Q ss_pred eEEEEecCCCcchhHHhhHHHHHhCCCeEEEE
Q 024134 18 HFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAM 49 (272)
Q Consensus 18 ~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~ 49 (272)
.+++++|.++....|..+.+.|.+.|+.+...
T Consensus 2 ~~~I~N~~~~~~~~~~~~~~~l~~~g~~~~v~ 33 (293)
T TIGR03702 2 ALLILNGKQADNEDVREAVGDLRDEGIQLHVR 33 (293)
T ss_pred EEEEEeCCccchhHHHHHHHHHHHCCCeEEEE
Confidence 46778887666677888888898888765433
No 399
>CHL00175 minD septum-site determining protein; Validated
Probab=38.84 E-value=75 Score=24.24 Aligned_cols=37 Identities=16% Similarity=0.168 Sum_probs=28.1
Q ss_pred CCeEEEEecCCCcchhH--HhhHHHHHhCCCeEEEEcCC
Q 024134 16 QKHFVLVHGSNHGAWCW--YKVKPRLEAAGHRVTAMDLA 52 (272)
Q Consensus 16 ~~~vv~lhG~~~~~~~~--~~~~~~l~~~g~~v~~~d~~ 52 (272)
+..|.++.|-|+.+... ..++..|++.|++|+.+|+-
T Consensus 15 ~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD~D 53 (281)
T CHL00175 15 SRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDAD 53 (281)
T ss_pred ceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 45677777777776553 56788899999999999874
No 400
>PRK03846 adenylylsulfate kinase; Provisional
Probab=38.79 E-value=90 Score=22.33 Aligned_cols=37 Identities=11% Similarity=0.059 Sum_probs=26.4
Q ss_pred cCCCeEEEEecCCCcchh--HHhhHHHHHhCCCeEEEEc
Q 024134 14 KKQKHFVLVHGSNHGAWC--WYKVKPRLEAAGHRVTAMD 50 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~--~~~~~~~l~~~g~~v~~~d 50 (272)
+.++.++.+.|..+++.. -..+...|...|+.++.+|
T Consensus 21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld 59 (198)
T PRK03846 21 GHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLD 59 (198)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEc
Confidence 567889999998777765 3455566666677777776
No 401
>PF06289 FlbD: Flagellar protein (FlbD); InterPro: IPR009384 This family consists of several bacterial FlbD flagellar proteins. The exact function of this family is unknown [].
Probab=38.70 E-value=53 Score=18.35 Aligned_cols=35 Identities=9% Similarity=0.184 Sum_probs=26.6
Q ss_pred cCCCceEEEecCCCcccccCCCchHHHHHHHHHHhh
Q 024134 236 NNPVNEVMAIKGADHMAMLSKPQPLSDCFSQIAHKY 271 (272)
Q Consensus 236 ~~~~~~~~~~~~~gH~~~~~~p~~~~~~i~~fl~~~ 271 (272)
..|+ +.+.+-++.++.-.|.++++.+.+.+|-++.
T Consensus 24 ~~PD-TvItL~~G~k~vV~Es~~eVi~ki~~y~~~i 58 (60)
T PF06289_consen 24 ETPD-TVITLTNGKKYVVKESVEEVIEKIIEYRRKI 58 (60)
T ss_pred EcCC-eEEEEeCCCEEEEECCHHHHHHHHHHHHHhc
Confidence 3466 5555555777888899999999999997764
No 402
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=38.69 E-value=2.3e+02 Score=23.50 Aligned_cols=77 Identities=13% Similarity=0.084 Sum_probs=44.8
Q ss_pred CCCeEEEEecCCCcc---hhHHhhHHHHHhC--CCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHh-cCCCcEE
Q 024134 15 KQKHFVLVHGSNHGA---WCWYKVKPRLEAA--GHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASL-SADEKVI 88 (272)
Q Consensus 15 ~~~~vv~lhG~~~~~---~~~~~~~~~l~~~--g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l-~~~~~~~ 88 (272)
.+|.+|++.+.+.+. +....+++.+.++ |..|+.+.-+|+..|.. ...+...+.+.+.+... .....+.
T Consensus 96 ~~P~~I~V~tTC~~e~IGDDi~~v~~e~~~~~~~~pvv~v~t~Gf~g~~~-----~G~~~~~~alv~~~~~~~~~~~~Vn 170 (427)
T PRK02842 96 PNISVLFLVGSCPSEVIKLDLEGLAERLSTEFAGVPVLNYSGSGLETTFT-----QGEDAVLAALVPFCPEAPADHPSLV 170 (427)
T ss_pred CCCCEEEEECCChHHhhcCCHHHHHHHhhcccCCCeEEEeeCCCccccHH-----HHHHHHHHHHhhhcccccCCCCcEE
Confidence 467888888876554 4467777777665 78899999998855411 12222333333222211 1335677
Q ss_pred EEEeCcch
Q 024134 89 LVGHSFGG 96 (272)
Q Consensus 89 lvG~S~Gg 96 (272)
++|.-..+
T Consensus 171 iiG~~~~~ 178 (427)
T PRK02842 171 LVGSLADV 178 (427)
T ss_pred EEEeCCcc
Confidence 88855443
No 403
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=38.65 E-value=1.3e+02 Score=20.61 Aligned_cols=74 Identities=19% Similarity=0.359 Sum_probs=40.8
Q ss_pred HhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcCCCc-EEEEEeCcchHHHHHHHhhCcccee
Q 024134 33 YKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSADEK-VILVGHSFGGLSVALAADKFPHKIS 111 (272)
Q Consensus 33 ~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~~~~-~~lvG~S~Gg~~a~~~a~~~p~~v~ 111 (272)
..+.++|.++||.|+-+- . .+... ..++.+++..+...+..- ...+ +.+.|...|- ...|.++|. |+
T Consensus 16 ~~l~~~L~~~g~eV~D~G---~--~~~~~--~~dYpd~a~~va~~V~~g-~~~~GIliCGtGiG~---siaANK~~G-IR 83 (148)
T PRK05571 16 EEIIEHLEELGHEVIDLG---P--DSYDA--SVDYPDYAKKVAEAVVAG-EADRGILICGTGIGM---SIAANKVKG-IR 83 (148)
T ss_pred HHHHHHHHHCCCEEEEcC---C--CCCCC--CCCHHHHHHHHHHHHHcC-CCCEEEEEcCCcHHH---HHHHhcCCC-eE
Confidence 457788988999885432 1 11110 146677777777766543 3333 3444444443 344667765 55
Q ss_pred eeeeeec
Q 024134 112 VAIFLTA 118 (272)
Q Consensus 112 ~lvl~~~ 118 (272)
+.++.++
T Consensus 84 AA~~~d~ 90 (148)
T PRK05571 84 AALCHDT 90 (148)
T ss_pred EEEECCH
Confidence 5554543
No 404
>PRK14483 DhaKLM operon coactivator DhaQ; Provisional
Probab=38.54 E-value=1.2e+02 Score=24.04 Aligned_cols=36 Identities=19% Similarity=0.302 Sum_probs=28.4
Q ss_pred cCCCeEEEEecCCCcchh-----HHhhHHHHHhCCCeEEEE
Q 024134 14 KKQKHFVLVHGSNHGAWC-----WYKVKPRLEAAGHRVTAM 49 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~-----~~~~~~~l~~~g~~v~~~ 49 (272)
.+...+|++.|+|+++.. ++.+.+.|.++|..+...
T Consensus 250 ~gd~v~vlVN~LG~ts~~El~i~~~~v~~~L~~~gi~v~r~ 290 (329)
T PRK14483 250 KGDNFILLINGLGATTLMEQYIFANDIRRLLELEGLQITFV 290 (329)
T ss_pred CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHHHHCCCEEEEe
Confidence 445799999999999865 678888998888876554
No 405
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=38.51 E-value=1.1e+02 Score=21.50 Aligned_cols=42 Identities=14% Similarity=0.090 Sum_probs=31.4
Q ss_pred CCCeEEEEecCCCcchh--HHhhHHHHHhCCCeEEEEcCCCCCC
Q 024134 15 KQKHFVLVHGSNHGAWC--WYKVKPRLEAAGHRVTAMDLAASGI 56 (272)
Q Consensus 15 ~~~~vv~lhG~~~~~~~--~~~~~~~l~~~g~~v~~~d~~G~G~ 56 (272)
..++|+.+-|..+++.. -..++..|..+|++|-.+-..+||.
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik~~~~~~ 47 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDM 47 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEEEcCCCc
Confidence 34667788888777665 3788888988899888887767664
No 406
>cd07211 Pat_PNPLA8 Patatin-like phospholipase domain containing protein 8. PNPLA8 is a Ca-independent myocardial phospholipase which maintains mitochondrial integrity. PNPLA8 is also known as iPLA2-gamma. In humans, it is predominantly expressed in heart tissue. iPLA2-gamma can catalyze both phospholipase A1 and A2 reactions (PLA1 and PLA2 respectively). This family includes PNPLA8 (iPLA2-gamma) from Homo sapiens and iPLA2-2 from Mus musculus.
Probab=38.50 E-value=46 Score=25.92 Aligned_cols=18 Identities=22% Similarity=0.163 Sum_probs=15.6
Q ss_pred EEEEEeCcchHHHHHHHh
Q 024134 87 VILVGHSFGGLSVALAAD 104 (272)
Q Consensus 87 ~~lvG~S~Gg~~a~~~a~ 104 (272)
-.+.|-|.||.+|+.++.
T Consensus 43 Dli~GTStGgiiA~~la~ 60 (308)
T cd07211 43 DYICGVSTGAILAFLLGL 60 (308)
T ss_pred CEEEecChhHHHHHHHhc
Confidence 357899999999999985
No 407
>PF03681 UPF0150: Uncharacterised protein family (UPF0150); InterPro: IPR005357 This family of small proteins is uncharacterised. In Q9A3L8 from SWISSPROT this domain is found next to a DNA binding helix-turn-helix domain IPR002145 from INTERPRO, which suggests that this is some kind of ligand binding domain.; PDB: 2DSY_C 2YZT_A 3KWR_A.
Probab=38.46 E-value=24 Score=18.28 Aligned_cols=34 Identities=21% Similarity=0.005 Sum_probs=22.8
Q ss_pred hCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHH
Q 024134 41 AAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILAS 80 (272)
Q Consensus 41 ~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~ 80 (272)
..+|.+.++|+||+-.. ..|.++..+.+.+.+..
T Consensus 11 ~~~y~~~~pdlpg~~t~------G~t~eea~~~~~eal~~ 44 (48)
T PF03681_consen 11 DGGYVAYFPDLPGCFTQ------GDTLEEALENAKEALEL 44 (48)
T ss_dssp SSSEEEEETTCCTCEEE------ESSHHHHHHHHHHHHHH
T ss_pred CCeEEEEeCCccChhhc------CCCHHHHHHHHHHHHHH
Confidence 35789999999976422 13667776666666653
No 408
>cd07222 Pat_PNPLA4 Patatin-like phospholipase domain containing protein 4. PNPLA4, also known as GS2 (gene sequence-2), shows both lipase and transacylation activities. GS2 lipase is expressed in various tissues, predominantly in muscle and adipocytes tissue. It is also expressed in keratinocytes and shows retinyl ester hydrolase, acylglycerol, TG hydrolase, and PLA2 activity. This family includes patatin-like proteins: GS2 from mammals, PNPLA4 (Patatin-like phospholipase domain-containing protein 4), and iPLA2-eta (Calcium-independent phospholipase A2) from Homo sapiens.
Probab=38.45 E-value=49 Score=24.82 Aligned_cols=23 Identities=35% Similarity=0.414 Sum_probs=18.1
Q ss_pred EEEEEeCcchHHHHHHHhhCccce
Q 024134 87 VILVGHSFGGLSVALAADKFPHKI 110 (272)
Q Consensus 87 ~~lvG~S~Gg~~a~~~a~~~p~~v 110 (272)
-.+.|-|.|+.++..++. .|+++
T Consensus 33 ~~i~GtSaGAl~aa~~a~-~~~~~ 55 (246)
T cd07222 33 KRFAGASAGSLVAAVLLT-APEKI 55 (246)
T ss_pred CEEEEECHHHHHHHHHhc-ChHHH
Confidence 478999999999999984 34433
No 409
>COG1582 FlgEa Uncharacterized protein, possibly involved in motility [Cell motility and secretion]
Probab=38.43 E-value=65 Score=18.13 Aligned_cols=44 Identities=9% Similarity=0.090 Sum_probs=31.0
Q ss_pred cHHHHHHHHhcCCCceEEEecCCCcccccCCCchHHHHHHHHHHhh
Q 024134 226 PKEFQQWMIQNNPVNEVMAIKGADHMAMLSKPQPLSDCFSQIAHKY 271 (272)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~p~~~~~~i~~fl~~~ 271 (272)
.+...+. .+.+|+.....+. +.-+...|.-+++.+.|.+|-++.
T Consensus 15 N~~~IE~-ie~~PDttItLin-GkkyvVkEsveEVi~kI~~y~rkI 58 (67)
T COG1582 15 NAHHIET-IEAFPDTTITLIN-GKKYVVKESVEEVINKIIEYRRKI 58 (67)
T ss_pred CHHHhhh-hhccCCcEEEEEc-CcEEEEcccHHHHHHHHHHHHHHh
Confidence 3444443 4556888877776 666777777899999999887764
No 410
>cd07213 Pat17_PNPLA8_PNPLA9_like1 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=37.85 E-value=55 Score=25.20 Aligned_cols=20 Identities=25% Similarity=0.220 Sum_probs=17.2
Q ss_pred EEEEEeCcchHHHHHHHhhC
Q 024134 87 VILVGHSFGGLSVALAADKF 106 (272)
Q Consensus 87 ~~lvG~S~Gg~~a~~~a~~~ 106 (272)
-.++|.|.||.+|+.++..+
T Consensus 36 D~i~GTSaGaiia~~la~g~ 55 (288)
T cd07213 36 DLFAGTSAGSLIALGLALGY 55 (288)
T ss_pred eEEEEeCHHHHHHHHHHcCc
Confidence 46889999999999998654
No 411
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=37.61 E-value=2.1e+02 Score=22.77 Aligned_cols=94 Identities=18% Similarity=0.056 Sum_probs=54.9
Q ss_pred CCCeEEEEecCCCcchhHHhhHHHHHhCCCe---EEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcCCCcEEEEE
Q 024134 15 KQKHFVLVHGSNHGAWCWYKVKPRLEAAGHR---VTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSADEKVILVG 91 (272)
Q Consensus 15 ~~~~vv~lhG~~~~~~~~~~~~~~l~~~g~~---v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~lvG 91 (272)
.+.||++--|+ .+-..+...++.+.+.|.. ++....- |..|. ..++.-=.....++.. -.-++.+-+
T Consensus 132 ~gkPvilStGm-atl~Ei~~Av~~i~~~G~~~~~i~llhC~----s~YP~----~~~~~nL~~I~~Lk~~-f~~pVG~Sd 201 (329)
T TIGR03569 132 FGKPVILSTGM-ATLEEIEAAVGVLRDAGTPDSNITLLHCT----TEYPA----PFEDVNLNAMDTLKEA-FDLPVGYSD 201 (329)
T ss_pred cCCcEEEECCC-CCHHHHHHHHHHHHHcCCCcCcEEEEEEC----CCCCC----CcccCCHHHHHHHHHH-hCCCEEECC
Confidence 46679999998 5778888888999877764 5554421 21111 1111111222344443 236788889
Q ss_pred eCcchHHHHHHHhhCccceeeeeeeec
Q 024134 92 HSFGGLSVALAADKFPHKISVAIFLTA 118 (272)
Q Consensus 92 ~S~Gg~~a~~~a~~~p~~v~~lvl~~~ 118 (272)
||.|-.++..+.+.-..-|.+-+.++-
T Consensus 202 Ht~G~~~~~aAvalGA~iIEkH~tldk 228 (329)
T TIGR03569 202 HTLGIEAPIAAVALGATVIEKHFTLDK 228 (329)
T ss_pred CCccHHHHHHHHHcCCCEEEeCCChhh
Confidence 999977776666554444555544443
No 412
>COG5023 Tubulin [Cytoskeleton]
Probab=37.61 E-value=86 Score=25.18 Aligned_cols=52 Identities=17% Similarity=0.291 Sum_probs=32.1
Q ss_pred hhchHHHHHHHHHhc---CCCcEEEEEeCcchH--------HHHHHHhhCccceeeeeeeecc
Q 024134 68 YEYNEPLLEILASLS---ADEKVILVGHSFGGL--------SVALAADKFPHKISVAIFLTAF 119 (272)
Q Consensus 68 ~~~~~~~~~~i~~l~---~~~~~~lvG~S~Gg~--------~a~~~a~~~p~~v~~lvl~~~~ 119 (272)
.++++++.+.|+... +.-.=.++=||+||. +.-.+..+||+++..-..+-|.
T Consensus 110 ~e~~ddvmd~IrreAd~cD~LqGF~l~HS~gGGTGSG~GslLLerl~~eypkK~~~tfSV~P~ 172 (443)
T COG5023 110 KEIIDDVMDMIRREADGCDGLQGFLLLHSLGGGTGSGLGSLLLERLREEYPKKIKLTFSVFPA 172 (443)
T ss_pred HHHHHHHHHHHHHHhhcCccccceeeeeeccCcCcccHHHHHHHHHHHhcchhheeEEEeccC
Confidence 466777888887761 222345677887765 3344456788876665555553
No 413
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=37.55 E-value=54 Score=24.32 Aligned_cols=37 Identities=22% Similarity=0.336 Sum_probs=22.3
Q ss_pred cCCCeEEEEecCCCcchh-----HHhhHHHHHhCCCeEEEEc
Q 024134 14 KKQKHFVLVHGSNHGAWC-----WYKVKPRLEAAGHRVTAMD 50 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~-----~~~~~~~l~~~g~~v~~~d 50 (272)
.+++.|++.+|.+..... |..+++.|.++++.|+.+-
T Consensus 103 ~~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g 144 (247)
T PF01075_consen 103 KDKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLG 144 (247)
T ss_dssp TTSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--
T ss_pred ccCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEc
Confidence 356788888888765544 5678888888877777653
No 414
>COG1926 Predicted phosphoribosyltransferases [General function prediction only]
Probab=37.35 E-value=1.3e+02 Score=22.06 Aligned_cols=46 Identities=24% Similarity=0.281 Sum_probs=31.9
Q ss_pred hchHHHHHHHHHhcCCCcEEEEEeCcchH-HHHHHHhhCccceeeee
Q 024134 69 EYNEPLLEILASLSADEKVILVGHSFGGL-SVALAADKFPHKISVAI 114 (272)
Q Consensus 69 ~~~~~~~~~i~~l~~~~~~~lvG~S~Gg~-~a~~~a~~~p~~v~~lv 114 (272)
+-.+.+...|..+...++++++|-+.||. ++...|....-..+-+|
T Consensus 9 dAGr~La~~l~~~~~~~~~iVlaLpRGGvpva~evA~~lga~ldvli 55 (220)
T COG1926 9 DAGRKLAQELAALRDLKDVIVLALPRGGVPVAFEVAQALGAPLDVLI 55 (220)
T ss_pred HHHHHHHHHHHhhccCCCcEEEEecCCCchHHHHHHHHhCCCeeEEE
Confidence 44455666666663358899999999995 78888877655454444
No 415
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=36.96 E-value=44 Score=21.62 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=19.1
Q ss_pred hHHhhHHHHHhCCCeEEEEcCC
Q 024134 31 CWYKVKPRLEAAGHRVTAMDLA 52 (272)
Q Consensus 31 ~~~~~~~~l~~~g~~v~~~d~~ 52 (272)
.|..+++.|+++|+.|++.|--
T Consensus 24 ~~~~VA~~L~e~g~dv~atDI~ 45 (129)
T COG1255 24 FFLDVAKRLAERGFDVLATDIN 45 (129)
T ss_pred hHHHHHHHHHHcCCcEEEEecc
Confidence 5677899999999999999964
No 416
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=36.86 E-value=90 Score=25.81 Aligned_cols=37 Identities=8% Similarity=0.077 Sum_probs=29.0
Q ss_pred CCCeEEEEecCCCcchh--HHhhHHHHHhCCCeEEEEcC
Q 024134 15 KQKHFVLVHGSNHGAWC--WYKVKPRLEAAGHRVTAMDL 51 (272)
Q Consensus 15 ~~~~vv~lhG~~~~~~~--~~~~~~~l~~~g~~v~~~d~ 51 (272)
.+|.+|++-|..+++.. -..++..|.++|++|..++.
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~ 136 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCA 136 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcC
Confidence 45789999999888765 45677788888998887765
No 417
>PRK11168 glpC sn-glycerol-3-phosphate dehydrogenase subunit C; Provisional
Probab=36.53 E-value=1.9e+02 Score=23.46 Aligned_cols=42 Identities=19% Similarity=0.133 Sum_probs=26.6
Q ss_pred CCCeEEEEecCCCcc---hhHHhhHHHHHhCCCeEEEEcCCCCCC
Q 024134 15 KQKHFVLVHGSNHGA---WCWYKVKPRLEAAGHRVTAMDLAASGI 56 (272)
Q Consensus 15 ~~~~vv~lhG~~~~~---~~~~~~~~~l~~~g~~v~~~d~~G~G~ 56 (272)
.+..|+|++|-..+. ..-......|.+.|+.|+.++..-+|.
T Consensus 160 ~~~~v~~f~gC~~~~~~p~~~~a~~~lL~~~G~~v~~~~~~CCG~ 204 (396)
T PRK11168 160 YKKQVAYFHGCYVNYNHPQLGKDLVKVLNAMGYEVLLPKEKCCGL 204 (396)
T ss_pred CCCeEEEECccccccCCcHHHHHHHHHHHHCCCEEEcCCCCccCh
Confidence 345799999865443 223456677778899995555444444
No 418
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=36.29 E-value=1.5e+02 Score=21.32 Aligned_cols=38 Identities=8% Similarity=0.072 Sum_probs=26.0
Q ss_pred CCCeEEEEecCCCcchhH--HhhHHHHHh-CCCeEEEEcCC
Q 024134 15 KQKHFVLVHGSNHGAWCW--YKVKPRLEA-AGHRVTAMDLA 52 (272)
Q Consensus 15 ~~~~vv~lhG~~~~~~~~--~~~~~~l~~-~g~~v~~~d~~ 52 (272)
..+.|.+.-+-++.+... ..++..|+. .|++|+.+|.-
T Consensus 34 ~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D 74 (207)
T TIGR03018 34 NNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDAD 74 (207)
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 345666666555555543 567788885 59999999864
No 419
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=36.17 E-value=75 Score=25.12 Aligned_cols=35 Identities=23% Similarity=0.215 Sum_probs=26.2
Q ss_pred CCeEEEEec-CCCcc-----hhHHhhHHHHHhCCCeEEEEc
Q 024134 16 QKHFVLVHG-SNHGA-----WCWYKVKPRLEAAGHRVTAMD 50 (272)
Q Consensus 16 ~~~vv~lhG-~~~~~-----~~~~~~~~~l~~~g~~v~~~d 50 (272)
+|.|++.|| ..+.. +.|..+++.|.++|+.|+.+-
T Consensus 175 ~~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g 215 (334)
T COG0859 175 RPYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFG 215 (334)
T ss_pred CCeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEec
Confidence 588999999 33233 357889999999988888763
No 420
>PRK02399 hypothetical protein; Provisional
Probab=35.76 E-value=1.1e+02 Score=25.04 Aligned_cols=43 Identities=19% Similarity=0.188 Sum_probs=36.2
Q ss_pred CCCeEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCCCCCCC
Q 024134 15 KQKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGIN 57 (272)
Q Consensus 15 ~~~~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s 57 (272)
..+++|-+-=+|.+..+-....+.|.++||.|++|.--|.|..
T Consensus 184 ~~kp~Ig~TmfGvTtp~v~~~~~~Le~~GyEvlVFHATG~GGr 226 (406)
T PRK02399 184 DDKPLIGLTMFGVTTPCVQAAREELEARGYEVLVFHATGTGGR 226 (406)
T ss_pred CCCceEEEecCCCcHHHHHHHHHHHHhCCCeEEEEcCCCCchH
Confidence 3456777777787777888889999999999999999999874
No 421
>PF10561 UPF0565: Uncharacterised protein family UPF0565; InterPro: IPR018881 This family of proteins has no known function.
Probab=35.44 E-value=66 Score=25.02 Aligned_cols=37 Identities=19% Similarity=0.181 Sum_probs=25.7
Q ss_pred CcEEEEEeCcchHHHHHHHhhCc----------------cceeeeeeeeccCC
Q 024134 85 EKVILVGHSFGGLSVALAADKFP----------------HKISVAIFLTAFMP 121 (272)
Q Consensus 85 ~~~~lvG~S~Gg~~a~~~a~~~p----------------~~v~~lvl~~~~~~ 121 (272)
.+++|+|+|-||.+.-.+..+.. .+|+.+-.+++...
T Consensus 193 ~~~~LiGFSKGcvVLNqll~El~~~~~~~~~~~~~~~~l~~I~~~~wLD~Gh~ 245 (303)
T PF10561_consen 193 PPLTLIGFSKGCVVLNQLLYELHYLEELARVDKEIERFLSRISDMYWLDGGHN 245 (303)
T ss_pred CceEEEEecCcchHHHHHHHHHHhhhcccCCchHHHHHHHhhheEEEeccCCC
Confidence 47899999999987666554432 24677777776544
No 422
>PRK13529 malate dehydrogenase; Provisional
Probab=35.28 E-value=1.9e+02 Score=24.92 Aligned_cols=82 Identities=16% Similarity=0.079 Sum_probs=45.8
Q ss_pred eEEEEecCCCcchh-HHhhHHHHHhCCC-------eEEEEcCCCCCCCCccccc------ccchhh--------chHHHH
Q 024134 18 HFVLVHGSNHGAWC-WYKVKPRLEAAGH-------RVTAMDLAASGINMKKIQD------VRSFYE--------YNEPLL 75 (272)
Q Consensus 18 ~vv~lhG~~~~~~~-~~~~~~~l~~~g~-------~v~~~d~~G~G~s~~~~~~------~~~~~~--------~~~~~~ 75 (272)
.-+++.|.|..+-- -+.+...+...|. +++.+|..|-=..+...-. ...... ...++.
T Consensus 296 ~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa~~~~~~~~~~~~~~~~~L~ 375 (563)
T PRK13529 296 QRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPYARKREELADWDTEGDVISLL 375 (563)
T ss_pred cEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHHhhhcccccccccccCCCCHH
Confidence 34556677655533 4455566666677 8999999884322211100 000000 113566
Q ss_pred HHHHHhcCCCcEEEEEeCc-chHHHHHH
Q 024134 76 EILASLSADEKVILVGHSF-GGLSVALA 102 (272)
Q Consensus 76 ~~i~~l~~~~~~~lvG~S~-Gg~~a~~~ 102 (272)
++++.. +|-+++|-|- ||.+.-..
T Consensus 376 e~v~~~---kPtvLIG~S~~~g~Ft~ev 400 (563)
T PRK13529 376 EVVRNV---KPTVLIGVSGQPGAFTEEI 400 (563)
T ss_pred HHHhcc---CCCEEEEecCCCCCCCHHH
Confidence 666644 8999999998 67654443
No 423
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=34.87 E-value=58 Score=18.87 Aligned_cols=31 Identities=32% Similarity=0.455 Sum_probs=17.8
Q ss_pred CCeEEEEecCC-CcchhHHhhHHHHH-hCCCeEEEE
Q 024134 16 QKHFVLVHGSN-HGAWCWYKVKPRLE-AAGHRVTAM 49 (272)
Q Consensus 16 ~~~vv~lhG~~-~~~~~~~~~~~~l~-~~g~~v~~~ 49 (272)
.|.++++||.. ...+. ++...+ ++|+.++.+
T Consensus 31 ~~~~~lvhGga~~GaD~---iA~~wA~~~gv~~~~~ 63 (71)
T PF10686_consen 31 HPDMVLVHGGAPKGADR---IAARWARERGVPVIRF 63 (71)
T ss_pred CCCEEEEECCCCCCHHH---HHHHHHHHCCCeeEEe
Confidence 47788999976 44433 333333 356666554
No 424
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=34.69 E-value=87 Score=27.61 Aligned_cols=41 Identities=12% Similarity=0.228 Sum_probs=29.3
Q ss_pred CeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcCCCcEEEEE
Q 024134 44 HRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSADEKVILVG 91 (272)
Q Consensus 44 ~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~lvG 91 (272)
+..-.+..||||++. +++++.++.+.+...++ ..-++.++|
T Consensus 630 ~kte~isCPgCGRT~------~dlq~~~~~I~~~~~hl-~GvkiavMG 670 (733)
T PLN02925 630 TKTEYVSCPSCGRTL------FDLQEVSAEIREKTSHL-PGVSIAIMG 670 (733)
T ss_pred cCCeEEECCCCCCcc------ccHHHHHHHHHHHhhcC-CCceEEEEe
Confidence 445566678888874 56788888888888777 445676665
No 425
>cd07217 Pat17_PNPLA8_PNPLA9_like4 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=34.64 E-value=35 Score=27.12 Aligned_cols=19 Identities=26% Similarity=0.149 Sum_probs=16.2
Q ss_pred EEEEEeCcchHHHHHHHhh
Q 024134 87 VILVGHSFGGLSVALAADK 105 (272)
Q Consensus 87 ~~lvG~S~Gg~~a~~~a~~ 105 (272)
-.+.|.|.||.+|..++..
T Consensus 43 DlIaGTStGgIIAa~la~g 61 (344)
T cd07217 43 DFVGGTSTGSIIAACIALG 61 (344)
T ss_pred cEEEEecHHHHHHHHHHcC
Confidence 3578999999999999864
No 426
>PF01751 Toprim: Toprim domain; InterPro: IPR006171 This is a conserved region from DNA primase. This corresponds to the Toprim (topoisomerase-primase) domain common to DnaG primases, topoisomerases, OLD family nucleases and RecR/M DNA repair proteins []. Both DnaG motifs IV and V are present in the alignment, the DxD (V) motif may be involved in Mg2+ binding and mutations to the conserved glutamate (IV) completely abolish DnaG type primase activity. DNA primase 2.7.7.6 from EC is a nucleotidyltransferase it synthesizes the oligoribonucleotide primers required for DNA replication on the lagging strand of the replication fork; it can also prime the leading stand and has been implicated in cell division []. This family also includes the atypical archaeal A subunit from type II DNA topoisomerases []. Type II DNA topoisomerases catalyse the relaxation of DNA supercoiling by causing transient double strand breaks.; PDB: 2ZJT_A 3IG0_A 3M4I_A 3NUH_B 1GKU_B 1GL9_C 3PWT_A 1CY4_A 1ECL_A 1CY7_A ....
Probab=34.59 E-value=1.1e+02 Score=18.83 Aligned_cols=35 Identities=17% Similarity=0.197 Sum_probs=26.1
Q ss_pred HHHHHHHHhcCCCceEEEecCCCcccccCCCchHH
Q 024134 227 KEFQQWMIQNNPVNEVMAIKGADHMAMLSKPQPLS 261 (272)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~p~~~~ 261 (272)
+..++.+.+.+......+++-.||.+-+..|+...
T Consensus 8 ps~a~~i~~~l~~~~~~v~~~~Ghl~~~~~~~~~~ 42 (100)
T PF01751_consen 8 PSDAKAIAKALGGEEYIVIATSGHLLELAKPEDYD 42 (100)
T ss_dssp HHHHHHHHHHSSTTTEEEEEESSSSEESTTSSHHH
T ss_pred HHHHHHHHHHcCCCCEEEEEeCCcccccccccccc
Confidence 46677788877655677777789999988876643
No 427
>PF15566 Imm18: Immunity protein 18
Probab=34.53 E-value=45 Score=17.94 Aligned_cols=30 Identities=13% Similarity=0.149 Sum_probs=21.8
Q ss_pred hhhchHHHHHHHHHhcCCCcEEEEEeCcchH
Q 024134 67 FYEYNEPLLEILASLSADEKVILVGHSFGGL 97 (272)
Q Consensus 67 ~~~~~~~~~~~i~~l~~~~~~~lvG~S~Gg~ 97 (272)
+.-+++++..+.... ..+.++++--||||.
T Consensus 4 L~~L~~~l~~L~~~~-~~~H~Hlmtp~WgG~ 33 (52)
T PF15566_consen 4 LELLQDQLENLQEKE-PFDHEHLMTPDWGGE 33 (52)
T ss_pred HHHHHHHHHHHHhcc-CCCCceecccccccc
Confidence 344556666666665 578899999999996
No 428
>PRK10867 signal recognition particle protein; Provisional
Probab=34.46 E-value=2.7e+02 Score=23.19 Aligned_cols=69 Identities=20% Similarity=0.218 Sum_probs=39.2
Q ss_pred HHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcCCCcEEEEEeCcchHHHHHHHhhCcc--ceeeee
Q 024134 37 PRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSADEKVILVGHSFGGLSVALAADKFPH--KISVAI 114 (272)
Q Consensus 37 ~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~lvG~S~Gg~~a~~~a~~~p~--~v~~lv 114 (272)
......+|.++.+|-+|....+ +.+.+.+..+.+.. ....+++|.-++-|.-+...|..+-+ .+.++|
T Consensus 177 ~~a~~~~~DvVIIDTaGrl~~d---------~~lm~eL~~i~~~v-~p~evllVlda~~gq~av~~a~~F~~~~~i~giI 246 (433)
T PRK10867 177 EEAKENGYDVVIVDTAGRLHID---------EELMDELKAIKAAV-NPDEILLVVDAMTGQDAVNTAKAFNEALGLTGVI 246 (433)
T ss_pred HHHHhcCCCEEEEeCCCCcccC---------HHHHHHHHHHHHhh-CCCeEEEEEecccHHHHHHHHHHHHhhCCCCEEE
Confidence 3444567999999999865321 23344444555544 44555666555555555555554432 255666
Q ss_pred e
Q 024134 115 F 115 (272)
Q Consensus 115 l 115 (272)
+
T Consensus 247 l 247 (433)
T PRK10867 247 L 247 (433)
T ss_pred E
Confidence 5
No 429
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=34.45 E-value=1.1e+02 Score=20.07 Aligned_cols=34 Identities=18% Similarity=0.178 Sum_probs=18.5
Q ss_pred ccCCCeEEEEe-cCCCcchhHHhhHHHHHhCCCeEEEEc
Q 024134 13 AKKQKHFVLVH-GSNHGAWCWYKVKPRLEAAGHRVTAMD 50 (272)
Q Consensus 13 ~~~~~~vv~lh-G~~~~~~~~~~~~~~l~~~g~~v~~~d 50 (272)
..+++.||++. |...+...+ ..|...||+|..+|
T Consensus 84 ~~~~~vvvyC~~~G~rs~~a~----~~L~~~G~~v~~L~ 118 (128)
T cd01520 84 ERDPKLLIYCARGGMRSQSLA----WLLESLGIDVPLLE 118 (128)
T ss_pred CCCCeEEEEeCCCCccHHHHH----HHHHHcCCceeEeC
Confidence 35667778884 333333223 34445688866554
No 430
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=34.26 E-value=2.7e+02 Score=23.10 Aligned_cols=76 Identities=14% Similarity=0.166 Sum_probs=43.6
Q ss_pred hHHhhHHHHHh-CCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcCCCcEEEE-EeCcchHHHHHHHhhCcc
Q 024134 31 CWYKVKPRLEA-AGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSADEKVILV-GHSFGGLSVALAADKFPH 108 (272)
Q Consensus 31 ~~~~~~~~l~~-~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~lv-G~S~Gg~~a~~~a~~~p~ 108 (272)
.+...+..+.+ .++.++.+|-+|... .-....+.+.++++.. ....++|+ .-+.++.-....+..+..
T Consensus 307 ~L~~aL~~lk~~~~~DvVLIDTaGRs~---------kd~~lm~EL~~~lk~~-~PdevlLVLsATtk~~d~~~i~~~F~~ 376 (436)
T PRK11889 307 AMTRALTYFKEEARVDYILIDTAGKNY---------RASETVEEMIETMGQV-EPDYICLTLSASMKSKDMIEIITNFKD 376 (436)
T ss_pred HHHHHHHHHHhccCCCEEEEeCccccC---------cCHHHHHHHHHHHhhc-CCCeEEEEECCccChHHHHHHHHHhcC
Confidence 33444455543 368999999887633 1133455566666655 33445555 334566666666666543
Q ss_pred -ceeeeeee
Q 024134 109 -KISVAIFL 116 (272)
Q Consensus 109 -~v~~lvl~ 116 (272)
.++++|+.
T Consensus 377 ~~idglI~T 385 (436)
T PRK11889 377 IHIDGIVFT 385 (436)
T ss_pred CCCCEEEEE
Confidence 46666653
No 431
>cd01406 SIR2-like Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation.
Probab=34.24 E-value=62 Score=24.07 Aligned_cols=31 Identities=16% Similarity=0.191 Sum_probs=20.3
Q ss_pred HHHHHHHhcCCCcEEEEEeCcchHHHHHHHh
Q 024134 74 LLEILASLSADEKVILVGHSFGGLSVALAAD 104 (272)
Q Consensus 74 ~~~~i~~l~~~~~~~lvG~S~Gg~~a~~~a~ 104 (272)
+..+++.+-....+.++|.|+.=.-...+..
T Consensus 169 ~~~~l~~ll~~~~~LFiG~S~~D~~i~~ll~ 199 (242)
T cd01406 169 ATKFLKSDLEKYTVLFIGYSLTDPNIRYLLE 199 (242)
T ss_pred HHHHHHHHHhcCcEEEEEcCCCCCcHHHHHH
Confidence 4455555534588999999988765544443
No 432
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=34.19 E-value=1e+02 Score=21.10 Aligned_cols=38 Identities=16% Similarity=0.230 Sum_probs=27.2
Q ss_pred EEEEecCCCcchh--HHhhHHHHHhCCCeEEEEcCCCCCC
Q 024134 19 FVLVHGSNHGAWC--WYKVKPRLEAAGHRVTAMDLAASGI 56 (272)
Q Consensus 19 vv~lhG~~~~~~~--~~~~~~~l~~~g~~v~~~d~~G~G~ 56 (272)
|+.+-|..+++.. ...++..|.++|++|.++..-+|+.
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK~~~~~~ 40 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKARGYRVATIKHDHHDF 40 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccc
Confidence 3455677666655 3678888888899999998765543
No 433
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.11 E-value=84 Score=25.54 Aligned_cols=35 Identities=14% Similarity=0.142 Sum_probs=27.4
Q ss_pred cCCCeEEEEecCCCcchh--HHhhHHHHHhCCCeEEE
Q 024134 14 KKQKHFVLVHGSNHGAWC--WYKVKPRLEAAGHRVTA 48 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~--~~~~~~~l~~~g~~v~~ 48 (272)
..+|.||++-|+-++... ...++-++.++||.+..
T Consensus 98 K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~L 134 (483)
T KOG0780|consen 98 KGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVAL 134 (483)
T ss_pred cCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeE
Confidence 567999999999777643 67788888889987543
No 434
>COG2452 Predicted site-specific integrase-resolvase [DNA replication, recombination, and repair]
Probab=33.88 E-value=1.8e+02 Score=20.86 Aligned_cols=55 Identities=18% Similarity=0.219 Sum_probs=38.0
Q ss_pred CCeEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHh
Q 024134 16 QKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASL 81 (272)
Q Consensus 16 ~~~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l 81 (272)
-.-+++.|----...-|..+...+..+|.+++.+|.- . .+.+++++|+.+++...
T Consensus 115 V~rVvV~ykDRL~RFGfe~le~~~~a~~~eivvv~~~----------e-~~~eELveDlisIltsf 169 (193)
T COG2452 115 VRRVVVSYKDRLNRFGFELVEAVCKAHNVEIVVVNQE----------D-KDSEELVEDLVSILTSF 169 (193)
T ss_pred eeEEEEEccchHhHHhHHHHHHHHHhcCcEEEEecCC----------C-CCHHHHHHHHHHHHHHH
Confidence 3456666655444444677777787888899888742 1 23389999999998865
No 435
>PRK14479 dihydroxyacetone kinase; Provisional
Probab=33.80 E-value=2e+02 Score=25.01 Aligned_cols=36 Identities=25% Similarity=0.233 Sum_probs=28.1
Q ss_pred cCCCeEEEEecCCCcchh-----HHhhHHHHHhCCCeEEEE
Q 024134 14 KKQKHFVLVHGSNHGAWC-----WYKVKPRLEAAGHRVTAM 49 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~-----~~~~~~~l~~~g~~v~~~ 49 (272)
.+...+|++.|+|+.+.. ++.+.+.|.++|..+...
T Consensus 249 ~~d~v~~lvN~lG~t~~~El~i~~~~~~~~l~~~~i~v~~~ 289 (568)
T PRK14479 249 AGERVAVLVNGLGATPYEELFVVYGAVARLLAARGITVVRP 289 (568)
T ss_pred CCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHHCCCEEEEe
Confidence 445799999999998864 577888898888775544
No 436
>PRK05866 short chain dehydrogenase; Provisional
Probab=33.79 E-value=2.2e+02 Score=21.91 Aligned_cols=32 Identities=16% Similarity=0.151 Sum_probs=22.8
Q ss_pred EEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCC
Q 024134 19 FVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLA 52 (272)
Q Consensus 19 vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~ 52 (272)
.++|-|.+ +..=..++..|+++|++|++.+..
T Consensus 42 ~vlItGas--ggIG~~la~~La~~G~~Vi~~~R~ 73 (293)
T PRK05866 42 RILLTGAS--SGIGEAAAEQFARRGATVVAVARR 73 (293)
T ss_pred EEEEeCCC--cHHHHHHHHHHHHCCCEEEEEECC
Confidence 45666643 344466788888899999998754
No 437
>cd08769 DAP_dppA_2 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=33.69 E-value=1.6e+02 Score=22.53 Aligned_cols=50 Identities=12% Similarity=0.178 Sum_probs=32.8
Q ss_pred CceeEEEEeCCCCCccHHHHHHHHhcCCCceEEEec-CCCcccc-cCCCchHHHHHHH
Q 024134 211 SVKRDFVGSDKDNCIPKEFQQWMIQNNPVNEVMAIK-GADHMAM-LSKPQPLSDCFSQ 266 (272)
Q Consensus 211 ~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~-~~gH~~~-~~~p~~~~~~i~~ 266 (272)
.+|+.++.|++ ...++..+.+|+++.+.+. +.|++.- .-.|++..+.|.+
T Consensus 147 gVPV~lVsGDd------~~~~ea~~~~P~~~tv~vK~~~gr~aA~~~~p~~a~~~I~~ 198 (270)
T cd08769 147 GVPVVLVAGDS------ELEKEVKEETPWAVFVPTKESLSRYSAKSPSMKKVKEELRE 198 (270)
T ss_pred CCCEEEEecCH------HHHHHHHHhCCCceEEEEeeecCCCccccCCHHHHHHHHHH
Confidence 89999999975 3345556667999888886 3464433 3445555555544
No 438
>PRK03482 phosphoglycerate mutase; Provisional
Probab=33.68 E-value=1.5e+02 Score=21.46 Aligned_cols=37 Identities=24% Similarity=0.297 Sum_probs=23.4
Q ss_pred cchhhchHHHHHHHHHh---cCCCcEEEEEeCcchHHHHHHH
Q 024134 65 RSFYEYNEPLLEILASL---SADEKVILVGHSFGGLSVALAA 103 (272)
Q Consensus 65 ~~~~~~~~~~~~~i~~l---~~~~~~~lvG~S~Gg~~a~~~a 103 (272)
.++.++.+.+..+++.+ ...+.+.+|+| |+.+...++
T Consensus 120 Es~~~~~~Rv~~~l~~~~~~~~~~~vliVsH--g~~i~~l~~ 159 (215)
T PRK03482 120 ESMQELSDRMHAALESCLELPQGSRPLLVSH--GIALGCLVS 159 (215)
T ss_pred ccHHHHHHHHHHHHHHHHHhCCCCeEEEEeC--cHHHHHHHH
Confidence 47777777777777665 13356888888 455544443
No 439
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=33.67 E-value=1.1e+02 Score=24.17 Aligned_cols=38 Identities=13% Similarity=0.207 Sum_probs=28.1
Q ss_pred CCCeEEEEecCCCcchhH--HhhHHHHHhCCCeEEEEcCC
Q 024134 15 KQKHFVLVHGSNHGAWCW--YKVKPRLEAAGHRVTAMDLA 52 (272)
Q Consensus 15 ~~~~vv~lhG~~~~~~~~--~~~~~~l~~~g~~v~~~d~~ 52 (272)
++..+|.+.|-|+.+... ..++..|+++|++|..+|.-
T Consensus 29 ~~~~ii~v~gkgG~GKSt~a~nLa~~la~~g~rVllid~D 68 (329)
T cd02033 29 KKTQIIAIYGKGGIGKSFTLANLSYMMAQQGKRVLLIGCD 68 (329)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEee
Confidence 345566666888777664 56778899899999998763
No 440
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=33.60 E-value=1.7e+02 Score=22.22 Aligned_cols=84 Identities=18% Similarity=0.138 Sum_probs=46.7
Q ss_pred eEEEEecCCCcchh-HHhhHHHHHhCC-------CeEEEEcCCCCCCCCcccc-----c---ccchhhchHHHHHHHHHh
Q 024134 18 HFVLVHGSNHGAWC-WYKVKPRLEAAG-------HRVTAMDLAASGINMKKIQ-----D---VRSFYEYNEPLLEILASL 81 (272)
Q Consensus 18 ~vv~lhG~~~~~~~-~~~~~~~l~~~g-------~~v~~~d~~G~G~s~~~~~-----~---~~~~~~~~~~~~~~i~~l 81 (272)
.-+++.|.|...-- -+.+...+.+.| -+++.+|..|-=..+.+.. . ......-..++.+.++..
T Consensus 26 ~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~~~~~~~~~~~~~L~eav~~~ 105 (254)
T cd00762 26 HKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHLARFANPERESGDLEDAVEAA 105 (254)
T ss_pred cEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHHHHHcCcccccCCHHHHHHhh
Confidence 34566677655533 333444444322 2799999988422221110 0 001112234677777766
Q ss_pred cCCCcEEEEEeCc-chHHHHHHHh
Q 024134 82 SADEKVILVGHSF-GGLSVALAAD 104 (272)
Q Consensus 82 ~~~~~~~lvG~S~-Gg~~a~~~a~ 104 (272)
++-+++|-|- ||.+.-....
T Consensus 106 ---kptvlIG~S~~~g~ft~evv~ 126 (254)
T cd00762 106 ---KPDFLIGVSRVGGAFTPEVIR 126 (254)
T ss_pred ---CCCEEEEeCCCCCCCCHHHHH
Confidence 8899999998 8876555543
No 441
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=33.58 E-value=1.7e+02 Score=20.47 Aligned_cols=32 Identities=19% Similarity=0.200 Sum_probs=24.4
Q ss_pred EEEEecCCCcchhHHhhHHHHHhCCCeEEEEc
Q 024134 19 FVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMD 50 (272)
Q Consensus 19 vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d 50 (272)
-|++.|.|.+...-..+...|..-|..+...+
T Consensus 32 ~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~ 63 (179)
T TIGR03127 32 RIFVAGAGRSGLVGKAFAMRLMHLGFNVYVVG 63 (179)
T ss_pred EEEEEecCHHHHHHHHHHHHHHhCCCeEEEeC
Confidence 58888988887666677777777788887764
No 442
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=33.37 E-value=1.4e+02 Score=21.07 Aligned_cols=37 Identities=8% Similarity=-0.103 Sum_probs=24.5
Q ss_pred CCCeEEEEecCCCc---chhHHhhHHHHHhCCCeEEEEcC
Q 024134 15 KQKHFVLVHGSNHG---AWCWYKVKPRLEAAGHRVTAMDL 51 (272)
Q Consensus 15 ~~~~vv~lhG~~~~---~~~~~~~~~~l~~~g~~v~~~d~ 51 (272)
.+.++++.+.+... ....+.-++.|.+.|+.|+-++.
T Consensus 111 ~~~pv~i~PaMn~~M~~~p~~~~nl~~L~~~G~~vi~P~~ 150 (177)
T TIGR02113 111 PETPKLIAPAMNTKMYQNPITQRNIKILKKIGYQEIQPKE 150 (177)
T ss_pred CCCCEEEEeCCCHHHhCCHHHHHHHHHHHHCCCEEECCCc
Confidence 35678888855322 22345677888888998887764
No 443
>PF03490 Varsurf_PPLC: Variant-surface-glycoprotein phospholipase C; InterPro: IPR003633 Variant-surface-glycoprotein phospholipase C, by hydrolysis of the attached glycolipid, releases soluble variant surface glycoprotein containing phosphoinositol from the cell wall after lysis. It catalyses the conversion of variant-surface-glycoprotein 1,2 didecanoyl-SN-phosphatidylinositol and water to 1,2-didecanoylglycerol and the soluble variant-surface-glycoprotein. It also cleaves similar membrane anchors on some mammalian proteins.; GO: 0047396 glycosylphosphatidylinositol diacylglycerol-lyase activity, 0006650 glycerophospholipid metabolic process
Probab=33.36 E-value=40 Score=17.84 Aligned_cols=26 Identities=12% Similarity=0.146 Sum_probs=22.3
Q ss_pred cchhhchHHHHHHHHHhcCCCcEEEEE
Q 024134 65 RSFYEYNEPLLEILASLSADEKVILVG 91 (272)
Q Consensus 65 ~~~~~~~~~~~~~i~~l~~~~~~~lvG 91 (272)
++.+.+-.|+...|..+ .+..+.++|
T Consensus 6 w~PqSWM~DLrS~I~~~-~I~ql~ipG 31 (51)
T PF03490_consen 6 WHPQSWMSDLRSSIGEM-AITQLFIPG 31 (51)
T ss_pred cCcHHHHHHHHHHHhcc-eeeeEEecc
Confidence 56778889999999998 888888887
No 444
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=33.00 E-value=94 Score=23.54 Aligned_cols=39 Identities=23% Similarity=0.279 Sum_probs=26.5
Q ss_pred chHHHHHHHHHhcCCCcEEEEEeCcchHHHHHHHhhCcc
Q 024134 70 YNEPLLEILASLSADEKVILVGHSFGGLSVALAADKFPH 108 (272)
Q Consensus 70 ~~~~~~~~i~~l~~~~~~~lvG~S~Gg~~a~~~a~~~p~ 108 (272)
+.+.+..+.+.+....+++++|..-.|.++..-|...+.
T Consensus 35 I~~av~~~~~~l~~ggrl~~~GaGtSg~la~~da~e~~~ 73 (257)
T cd05007 35 IARAVDAAAERLRAGGRLIYVGAGTSGRLGVLDASELPP 73 (257)
T ss_pred HHHHHHHHHHHHHcCCEEEEEcCcHHHHHHHHHHHhccc
Confidence 333334444444466899999999999999777766553
No 445
>TIGR03607 patatin-related protein. This bacterial protein family contains an N-terminal patatin domain, where patatins are plant storage proteins capable of phospholipase activity (see pfam01734). Regions of strong sequence conservation are separated by regions of significant sequence and length variability. Members of the family are distributed sporadically among bacteria. The function is unknown.
Probab=32.97 E-value=62 Score=28.83 Aligned_cols=35 Identities=31% Similarity=0.375 Sum_probs=24.2
Q ss_pred hchHHHHHHHH---HhcCCCcEEEEEeCcchHHHHHHHh
Q 024134 69 EYNEPLLEILA---SLSADEKVILVGHSFGGLSVALAAD 104 (272)
Q Consensus 69 ~~~~~~~~~i~---~l~~~~~~~lvG~S~Gg~~a~~~a~ 104 (272)
..-.++.+.+. .. +...-++.|.|.||.++..+|.
T Consensus 48 ~~Y~~l~~~l~~~~~~-~~~~d~iaGTSAGAInaa~lA~ 85 (739)
T TIGR03607 48 AVYGALLELLGAHLRL-RVRVDVISGTSAGGINGVLLAY 85 (739)
T ss_pred hHHHHHHHHhhhhhcc-CCCCceEEeeCHHHHHHHHHHc
Confidence 33444455554 23 4566788999999999988886
No 446
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=32.97 E-value=2.1e+02 Score=21.37 Aligned_cols=16 Identities=25% Similarity=0.229 Sum_probs=8.4
Q ss_pred HHHHHhCCCeEEEEcC
Q 024134 36 KPRLEAAGHRVTAMDL 51 (272)
Q Consensus 36 ~~~l~~~g~~v~~~d~ 51 (272)
+..+.++|..|+.+|.
T Consensus 76 i~~~~~~~ipvV~i~~ 91 (273)
T cd06292 76 YERLAERGLPVVLVNG 91 (273)
T ss_pred HHHHHhCCCCEEEEcC
Confidence 3444445566666654
No 447
>PLN02591 tryptophan synthase
Probab=32.90 E-value=2.2e+02 Score=21.58 Aligned_cols=75 Identities=17% Similarity=0.007 Sum_probs=45.9
Q ss_pred CeEEEEecCCCcchhHHhhHHHHHhCCC-eEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcCCCcEEEEEeCcc
Q 024134 17 KHFVLVHGSNHGAWCWYKVKPRLEAAGH-RVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSADEKVILVGHSFG 95 (272)
Q Consensus 17 ~~vv~lhG~~~~~~~~~~~~~~l~~~g~-~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~lvG~S~G 95 (272)
|.|+|.--..--..-.+.+.+.+.+.|. -++.+|+| . +-.+.+.+.++.. +...+.++.-+.-
T Consensus 80 p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP------------~---ee~~~~~~~~~~~-gl~~I~lv~Ptt~ 143 (250)
T PLN02591 80 PIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLP------------L---EETEALRAEAAKN-GIELVLLTTPTTP 143 (250)
T ss_pred CEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCC------------H---HHHHHHHHHHHHc-CCeEEEEeCCCCC
Confidence 4444433222223345678888888886 58888986 1 3445666677777 8888988877766
Q ss_pred hHHHHHHHhhCc
Q 024134 96 GLSVALAADKFP 107 (272)
Q Consensus 96 g~~a~~~a~~~p 107 (272)
---.-.++..-+
T Consensus 144 ~~ri~~ia~~~~ 155 (250)
T PLN02591 144 TERMKAIAEASE 155 (250)
T ss_pred HHHHHHHHHhCC
Confidence 443444444433
No 448
>PF13709 DUF4159: Domain of unknown function (DUF4159)
Probab=32.72 E-value=1.5e+02 Score=21.59 Aligned_cols=38 Identities=5% Similarity=-0.153 Sum_probs=32.9
Q ss_pred CceeEEEEeCCCCCccHHHHHHHHhcCCCceEEEecCC
Q 024134 211 SVKRDFVGSDKDNCIPKEFQQWMIQNNPVNEVMAIKGA 248 (272)
Q Consensus 211 ~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (272)
..|++++.|..+...+++..+.+.+.+.+.-+++++.+
T Consensus 53 ~yP~ly~~g~~~~~~s~~e~~~Lr~Yl~~GGfl~~D~~ 90 (207)
T PF13709_consen 53 FYPFLYWPGHGDFPLSDEEIANLRRYLENGGFLLFDDR 90 (207)
T ss_pred hCCEEEEeCCCCCCCCHHHHHHHHHHHHcCCEEEEECC
Confidence 78999999999998888888999988877788888855
No 449
>CHL00194 ycf39 Ycf39; Provisional
Probab=32.58 E-value=1.6e+02 Score=22.88 Aligned_cols=24 Identities=8% Similarity=-0.054 Sum_probs=18.3
Q ss_pred chhHHhhHHHHHhCCCeEEEEcCC
Q 024134 29 AWCWYKVKPRLEAAGHRVTAMDLA 52 (272)
Q Consensus 29 ~~~~~~~~~~l~~~g~~v~~~d~~ 52 (272)
+..=..+++.|.++|++|.+++..
T Consensus 10 G~iG~~lv~~Ll~~g~~V~~l~R~ 33 (317)
T CHL00194 10 GTLGRQIVRQALDEGYQVRCLVRN 33 (317)
T ss_pred cHHHHHHHHHHHHCCCeEEEEEcC
Confidence 334456888888899999999764
No 450
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=32.34 E-value=1.9e+02 Score=20.69 Aligned_cols=59 Identities=10% Similarity=0.058 Sum_probs=33.8
Q ss_pred CCeEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHH-HHHHHh
Q 024134 16 QKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLL-EILASL 81 (272)
Q Consensus 16 ~~~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~-~~i~~l 81 (272)
+.++++++--.-....-..-+..|.+.|+.++-+.. |+-. ...+++|+++.+. .+++.+
T Consensus 115 ~~pvii~P~~M~~~p~~~~Nl~~L~~~G~~vi~P~~-g~~a------~p~~~~~~~~~~v~~~~~~l 174 (185)
T PRK06029 115 RRRLVLCVRETPLHLGHLRNMTKLAEMGAIIMPPVP-AFYH------RPQTLEDMVDQTVGRVLDLF 174 (185)
T ss_pred CCCEEEEeccccCCHHHHHHHHHHHHCcCEEECCCc-cccc------CCCCHHHHHHHHHHHHHHhc
Confidence 456666662111111223556778888888887764 3221 1247888887654 666766
No 451
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=32.18 E-value=2.3e+02 Score=21.65 Aligned_cols=57 Identities=18% Similarity=0.185 Sum_probs=38.3
Q ss_pred hHHhhHHHHHhCCCe-EEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcCCCcEEEEEeCcchHHHHHHH
Q 024134 31 CWYKVKPRLEAAGHR-VTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSADEKVILVGHSFGGLSVALAA 103 (272)
Q Consensus 31 ~~~~~~~~l~~~g~~-v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~lvG~S~Gg~~a~~~a 103 (272)
-.+.+++.+++.|.. ++.+|+| . +-.+++.+.++.. +...+.++.-+.----...++
T Consensus 107 G~e~F~~~~~~aGvdgviipDLP------------~---ee~~~~~~~~~~~-gi~~I~lv~PtT~~eri~~i~ 164 (263)
T CHL00200 107 GINKFIKKISQAGVKGLIIPDLP------------Y---EESDYLISVCNLY-NIELILLIAPTSSKSRIQKIA 164 (263)
T ss_pred CHHHHHHHHHHcCCeEEEecCCC------------H---HHHHHHHHHHHHc-CCCEEEEECCCCCHHHHHHHH
Confidence 346788888888865 7788886 1 2355667777777 888888887665443333444
No 452
>PF01341 Glyco_hydro_6: Glycosyl hydrolases family 6; InterPro: IPR016288 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The 1,4-beta cellobiohydrolase family plays a central role in the recycling of plant biomass. The biological conversion of cellulose to glucose generally requires three types of hydrolytic enzymes: Endoglucanases, which cut internal beta-1,4-glucosidic bonds; Exocellobiohydrolases that cut the dissaccharide cellobiose from the non-reducing end of the cellulose polymer chain; and Beta-1,4-glucosidases, which hydrolyze the cellobiose and other short cello-oligosaccharides to glucose.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030245 cellulose catabolic process; PDB: 2BOF_X 2BOG_X 1TML_A 3RPT_A 2BOD_X 2BOE_X 1DYS_B 3VOI_A 3VOG_A 3VOJ_A ....
Probab=32.07 E-value=88 Score=24.35 Aligned_cols=76 Identities=12% Similarity=0.195 Sum_probs=38.1
Q ss_pred cCCCeEEEEecCCCcchhHHhhHHHHHh---CC--CeEEEEcCCCCCC----CCc-ccccccchhhchHHHHHHHHHhcC
Q 024134 14 KKQKHFVLVHGSNHGAWCWYKVKPRLEA---AG--HRVTAMDLAASGI----NMK-KIQDVRSFYEYNEPLLEILASLSA 83 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~~~~~~~~l~~---~g--~~v~~~d~~G~G~----s~~-~~~~~~~~~~~~~~~~~~i~~l~~ 83 (272)
.+.|+-+.+-.+......=..+....+. .| ..++++++|+..- |.+ ......+++++++.+.+.|++. +
T Consensus 28 a~~p~A~W~~~~~~~~~~~~~l~~~~~~a~~~~~~~vlVvY~lP~RDC~a~~S~Geg~~~~~~Yk~wId~ia~~i~~~-g 106 (298)
T PF01341_consen 28 ANQPTAVWFDDIAAPPEVRQYLRAAVAQAAAAGKTPVLVVYNLPNRDCAAGASAGEGADSLASYKEWIDPIAAGIKKY-G 106 (298)
T ss_dssp CTS-B-EEE-SGGGHHHHHHHHHHHHHHHHHTTSEEEEEE---TTCSTTSSSTSSSGGTHHHHHHHHHHHHHHHHHHT-T
T ss_pred hcCCceEecCcCCCcchHHHHHHHHHHhhhccCCceEEEEeccCCCCccccccCCCCCCchhHHHHHHHHHHHHHHhc-C
Confidence 3567888885544333332233333322 22 3567788887543 333 2223346677888888888777 6
Q ss_pred CCcEEEE
Q 024134 84 DEKVILV 90 (272)
Q Consensus 84 ~~~~~lv 90 (272)
..++++|
T Consensus 107 ~~~~vvI 113 (298)
T PF01341_consen 107 DRRAVVI 113 (298)
T ss_dssp TSEEEEE
T ss_pred CCceEEE
Confidence 6666655
No 453
>PLN02496 probable phosphopantothenoylcysteine decarboxylase
Probab=32.06 E-value=2.1e+02 Score=21.03 Aligned_cols=61 Identities=13% Similarity=0.069 Sum_probs=34.8
Q ss_pred CCeEEEEecCCCcchhH-----HhhHHHHHhCCCeEEEEcC--CCCCCCCcccccccchhhchHHHHHHHHH
Q 024134 16 QKHFVLVHGSNHGAWCW-----YKVKPRLEAAGHRVTAMDL--AASGINMKKIQDVRSFYEYNEPLLEILAS 80 (272)
Q Consensus 16 ~~~vv~lhG~~~~~~~~-----~~~~~~l~~~g~~v~~~d~--~G~G~s~~~~~~~~~~~~~~~~~~~~i~~ 80 (272)
+.++++.+.+. ..+| +.-+..|.+.|+.|+-+.. ..+|... .+.....++.+..+..++..
T Consensus 132 ~~Pv~iaPaMN--~~Mw~~Pat~~nl~~L~~~G~~vi~P~~g~lAcg~~G--~Grm~ep~~I~~~i~~~l~~ 199 (209)
T PLN02496 132 SKPLFVAPAMN--TFMWNNPFTERHLMSIDELGISLIPPVTKRLACGDYG--NGAMAEPSLIYSTVRLFLES 199 (209)
T ss_pred CCCEEEEeCCC--HHHHhCHHHHHHHHHHHHCCCEEECCCcCcccCCCcC--CCCCCCHHHHHHHHHHHHhh
Confidence 46788888653 4444 4456778888998887642 1233331 12223555655555555543
No 454
>COG2376 DAK1 Dihydroxyacetone kinase [Carbohydrate transport and metabolism]
Probab=31.93 E-value=1.6e+02 Score=23.25 Aligned_cols=33 Identities=24% Similarity=0.299 Sum_probs=26.4
Q ss_pred CCeEEEEecCCCcchh-----HHhhHHHHHhCCCeEEE
Q 024134 16 QKHFVLVHGSNHGAWC-----WYKVKPRLEAAGHRVTA 48 (272)
Q Consensus 16 ~~~vv~lhG~~~~~~~-----~~~~~~~l~~~g~~v~~ 48 (272)
...+|++.|+|+.+.. ++.+.+.|.++|..+..
T Consensus 248 ~~v~~lvn~lG~tp~~el~~~~~~v~~~l~~~~i~i~~ 285 (323)
T COG2376 248 DEVAVLVNGLGATPLMELYILYNRVARLLAAKGITIER 285 (323)
T ss_pred CcEEEEecCCCCCcHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 6799999999999854 67788889888766543
No 455
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=31.93 E-value=1.1e+02 Score=22.46 Aligned_cols=28 Identities=29% Similarity=0.235 Sum_probs=18.0
Q ss_pred EEEEecCCCcchhHHhhHHHHHhCCCeEEEEcC
Q 024134 19 FVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDL 51 (272)
Q Consensus 19 vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~ 51 (272)
=||..|-|.+.. +..|+++|+.|+++|.
T Consensus 40 rvL~~gCG~G~d-----a~~LA~~G~~V~avD~ 67 (218)
T PRK13255 40 RVLVPLCGKSLD-----MLWLAEQGHEVLGVEL 67 (218)
T ss_pred eEEEeCCCChHh-----HHHHHhCCCeEEEEcc
Confidence 345555444432 3446779999999996
No 456
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=31.87 E-value=1e+02 Score=23.42 Aligned_cols=85 Identities=14% Similarity=0.101 Sum_probs=45.8
Q ss_pred eEEEEecCCCcchh-HHhhHHHHHhCCC-------eEEEEcCCCCCCCCccc---c-----cccchhhchHHHHHHHHHh
Q 024134 18 HFVLVHGSNHGAWC-WYKVKPRLEAAGH-------RVTAMDLAASGINMKKI---Q-----DVRSFYEYNEPLLEILASL 81 (272)
Q Consensus 18 ~vv~lhG~~~~~~~-~~~~~~~l~~~g~-------~v~~~d~~G~G~s~~~~---~-----~~~~~~~~~~~~~~~i~~l 81 (272)
.-+++.|.|...-- -+.+...+..+|. +++.+|..|-=..+... . ..........++.+.++..
T Consensus 26 ~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~~L~eav~~~ 105 (255)
T PF03949_consen 26 QRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDREDLNPHKKPFARKTNPEKDWGSLLEAVKGA 105 (255)
T ss_dssp -EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTTSSHSHHHHHHHBSSSTTT--SSHHHHHHCH
T ss_pred cEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccCccCChhhhhhhccCcccccccCHHHHHHhc
Confidence 34555676655533 4455566555565 69999988742222111 0 0001111114677777755
Q ss_pred cCCCcEEEEEeC-cchHHHHHHHhh
Q 024134 82 SADEKVILVGHS-FGGLSVALAADK 105 (272)
Q Consensus 82 ~~~~~~~lvG~S-~Gg~~a~~~a~~ 105 (272)
+|-+|+|-| .||.+.-.....
T Consensus 106 ---kPtvLIG~S~~~g~ft~evv~~ 127 (255)
T PF03949_consen 106 ---KPTVLIGLSGQGGAFTEEVVRA 127 (255)
T ss_dssp -----SEEEECSSSTTSS-HHHHHH
T ss_pred ---CCCEEEEecCCCCcCCHHHHHH
Confidence 899999999 888876666544
No 457
>PRK00865 glutamate racemase; Provisional
Probab=31.72 E-value=1.5e+02 Score=22.46 Aligned_cols=52 Identities=6% Similarity=-0.015 Sum_probs=38.3
Q ss_pred CceeEEEEeCCCCCccHHHHHHHHhcCCCceEEEecCCCcccccCCC-chHHHHHH
Q 024134 211 SVKRDFVGSDKDNCIPKEFQQWMIQNNPVNEVMAIKGADHMAMLSKP-QPLSDCFS 265 (272)
Q Consensus 211 ~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~p-~~~~~~i~ 265 (272)
+.|+.++=+. +--....+.+.+.+|+..++.+-+..|+++-+++ +++.+.+.
T Consensus 5 ~~~IgvfDSG---iGGLtvl~~i~~~lp~~~~iY~~D~~~~PYG~ks~~~i~~~~~ 57 (261)
T PRK00865 5 NAPIGVFDSG---VGGLTVLREIRRLLPDEHIIYVGDTARFPYGEKSEEEIRERTL 57 (261)
T ss_pred CCeEEEEECC---ccHHHHHHHHHHHCCCCCEEEEecCCCCCCCCCCHHHHHHHHH
Confidence 3466666333 3446788999999999999999999999998877 44444443
No 458
>TIGR01118 lacA galactose-6-phosphate isomerase, LacA subunit. This family contains members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=31.67 E-value=1.7e+02 Score=19.88 Aligned_cols=70 Identities=14% Similarity=0.129 Sum_probs=38.9
Q ss_pred HhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcCCCc-EEEEEeCcchHHHHHHHhhCcccee
Q 024134 33 YKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSADEK-VILVGHSFGGLSVALAADKFPHKIS 111 (272)
Q Consensus 33 ~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~~~~-~~lvG~S~Gg~~a~~~a~~~p~~v~ 111 (272)
..+.++|.++||.|+=+ |.+. ..++.+++..+...+..- ...+ +.+.|.-.|- ...|.++|. |+
T Consensus 16 ~~i~~~L~~~G~eV~D~---G~~~-------~~dYpd~a~~va~~V~~~-e~~~GIliCGtGiG~---siaANK~~G-IR 80 (141)
T TIGR01118 16 DVIKNFLVDNGFEVIDV---TEGD-------GQDFVDVTLAVASEVQKD-EQNLGIVIDAYGAGS---FMVATKIKG-MI 80 (141)
T ss_pred HHHHHHHHHCCCEEEEc---CCCC-------CCCcHHHHHHHHHHHHcC-CCceEEEEcCCCHhH---hhhhhcCCC-eE
Confidence 45778899999988543 2211 146677777777666543 3333 4444444442 234555554 55
Q ss_pred eeeeee
Q 024134 112 VAIFLT 117 (272)
Q Consensus 112 ~lvl~~ 117 (272)
+.++.+
T Consensus 81 AA~~~d 86 (141)
T TIGR01118 81 AAEVSD 86 (141)
T ss_pred EEEECC
Confidence 544444
No 459
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=31.59 E-value=73 Score=23.29 Aligned_cols=15 Identities=40% Similarity=0.683 Sum_probs=12.5
Q ss_pred HHHHhCCCeEEEEcC
Q 024134 37 PRLEAAGHRVTAMDL 51 (272)
Q Consensus 37 ~~l~~~g~~v~~~d~ 51 (272)
..|+++|+.|+++|.
T Consensus 50 ~~LA~~G~~V~gvD~ 64 (213)
T TIGR03840 50 AWLAEQGHRVLGVEL 64 (213)
T ss_pred HHHHhCCCeEEEEeC
Confidence 457789999999996
No 460
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=31.54 E-value=94 Score=24.31 Aligned_cols=33 Identities=18% Similarity=0.363 Sum_probs=20.2
Q ss_pred CCeEEEEecCCCcch-----hHHhhHHHHHhCCCeEEE
Q 024134 16 QKHFVLVHGSNHGAW-----CWYKVKPRLEAAGHRVTA 48 (272)
Q Consensus 16 ~~~vv~lhG~~~~~~-----~~~~~~~~l~~~g~~v~~ 48 (272)
++.++++||...... .|..+++.|.++|++++.
T Consensus 178 ~~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~ivl 215 (322)
T PRK10964 178 GPYLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIKL 215 (322)
T ss_pred CCeEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEEE
Confidence 455666777643322 356677777767777664
No 461
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=31.51 E-value=1.3e+02 Score=22.67 Aligned_cols=34 Identities=21% Similarity=0.120 Sum_probs=27.4
Q ss_pred CeEEEEecCCCcchhHHhhHHHHHhCCCeEEEEc
Q 024134 17 KHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMD 50 (272)
Q Consensus 17 ~~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d 50 (272)
..|+++-|-|.++..=--.++.|..+||+|.++-
T Consensus 61 ~~V~VlcG~GNNGGDGlv~AR~L~~~G~~V~v~~ 94 (246)
T PLN03050 61 PRVLLVCGPGNNGGDGLVAARHLAHFGYEVTVCY 94 (246)
T ss_pred CeEEEEECCCCCchhHHHHHHHHHHCCCeEEEEE
Confidence 4688888888887776667888988999988775
No 462
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=31.24 E-value=54 Score=19.61 Aligned_cols=19 Identities=26% Similarity=0.371 Sum_probs=16.1
Q ss_pred HHhhHHHHHhCCCeEEEEc
Q 024134 32 WYKVKPRLEAAGHRVTAMD 50 (272)
Q Consensus 32 ~~~~~~~l~~~g~~v~~~d 50 (272)
...+.+.|.++||.|+-++
T Consensus 10 Ls~v~~~L~~~GyeVv~l~ 28 (80)
T PF03698_consen 10 LSNVKEALREKGYEVVDLE 28 (80)
T ss_pred chHHHHHHHHCCCEEEecC
Confidence 4567889999999999887
No 463
>PRK06490 glutamine amidotransferase; Provisional
Probab=31.24 E-value=2.3e+02 Score=21.25 Aligned_cols=83 Identities=8% Similarity=0.059 Sum_probs=43.4
Q ss_pred CCeEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCC-CCCCC-Cc----------ccccccchhhchHHHHHHHHHhcC
Q 024134 16 QKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLA-ASGIN-MK----------KIQDVRSFYEYNEPLLEILASLSA 83 (272)
Q Consensus 16 ~~~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~-G~G~s-~~----------~~~~~~~~~~~~~~~~~~i~~l~~ 83 (272)
...+|+.|--......+ .+.|.+.|+.+-.++.. |--.. +. .+...++...+...+.++++.. -
T Consensus 8 ~~vlvi~h~~~~~~g~l---~~~l~~~g~~~~v~~~~~~~~~p~~l~~~dgvii~Ggp~~~~d~~~wi~~~~~~i~~~-~ 83 (239)
T PRK06490 8 RPVLIVLHQERSTPGRV---GQLLQERGYPLDIRRPRLGDPLPDTLEDHAGAVIFGGPMSANDPDDFIRREIDWISVP-L 83 (239)
T ss_pred ceEEEEecCCCCCChHH---HHHHHHCCCceEEEeccCCCCCCCcccccCEEEEECCCCCCCCCchHHHHHHHHHHHH-H
Confidence 34667778665555544 44455566665555421 10000 00 0011223344556666777765 2
Q ss_pred CCcEEEEEeCcchHHHHHH
Q 024134 84 DEKVILVGHSFGGLSVALA 102 (272)
Q Consensus 84 ~~~~~lvG~S~Gg~~a~~~ 102 (272)
..++=++|.++|..+...+
T Consensus 84 ~~~~PvLGIC~G~Qlla~a 102 (239)
T PRK06490 84 KENKPFLGICLGAQMLARH 102 (239)
T ss_pred HCCCCEEEECHhHHHHHHH
Confidence 2345589999999866555
No 464
>PF08496 Peptidase_S49_N: Peptidase family S49 N-terminal; InterPro: IPR013703 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found to the N terminus of bacterial signal peptidases that belong to the MEROPS peptidase family S49 (protease IV family, clan SK) (see also IPR002142 from INTERPRO) [, ]. ; GO: 0004252 serine-type endopeptidase activity, 0005886 plasma membrane
Probab=31.17 E-value=1e+02 Score=21.22 Aligned_cols=48 Identities=19% Similarity=0.275 Sum_probs=33.1
Q ss_pred CeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcCCCcEEEEEeCcchHH
Q 024134 44 HRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSADEKVILVGHSFGGLS 98 (272)
Q Consensus 44 ~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~lvG~S~Gg~~ 98 (272)
-+++++|+-|-=. ....+.+-+.|.+++......+.|.+-=-|-||++
T Consensus 98 ~r~~VldF~Gdi~-------A~~v~~LReeisail~~a~~~DeV~~rLES~GG~V 145 (155)
T PF08496_consen 98 PRLFVLDFKGDIK-------ASEVESLREEISAILSVATPEDEVLVRLESPGGMV 145 (155)
T ss_pred CeEEEEecCCCcc-------HHHHHHHHHHHHHHHHhCCCCCeEEEEEecCCcee
Confidence 6899999876321 13555666677777776645577888888888874
No 465
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=31.13 E-value=62 Score=28.48 Aligned_cols=78 Identities=14% Similarity=0.107 Sum_probs=47.0
Q ss_pred cCCCeEEEEecCCCc----------chhHHhhHHHHHhCCCeEEEEcCC-C--CCCCCccc-ccccc----hhhchHHHH
Q 024134 14 KKQKHFVLVHGSNHG----------AWCWYKVKPRLEAAGHRVTAMDLA-A--SGINMKKI-QDVRS----FYEYNEPLL 75 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~----------~~~~~~~~~~l~~~g~~v~~~d~~-G--~G~s~~~~-~~~~~----~~~~~~~~~ 75 (272)
+++-+|++-|..... ...|+..+..|.+.||+++.++-- . .|....+. .-..| ..+....+.
T Consensus 46 ~~~~~VLmYH~V~d~~~~~~~~~Vspe~Fe~QL~~Lk~nGY~~VSL~el~~~~~g~~~LP~KaV~LTFDDGy~sny~~Al 125 (672)
T PRK14581 46 KNTFVVIAYHDVEDDSADQRYLSVRSSALNEQFVWLRDNGYHVVSVDQILAARNGGPTLPDKAVLLTFDDGYSSFYRRVY 125 (672)
T ss_pred CCceEEEEeCcccCCCCccCccccCHHHHHHHHHHHHHCcCEEecHHHHHHHHhcCCCCCCCeEEEEEEcCCcchHHHHH
Confidence 455789999998643 235788899999999999998732 1 12221111 11122 334556677
Q ss_pred HHHHHhcCCC-cEEEEEe
Q 024134 76 EILASLSADE-KVILVGH 92 (272)
Q Consensus 76 ~~i~~l~~~~-~~~lvG~ 92 (272)
-++++. +.. -+.++|.
T Consensus 126 PILKky-g~pATfFvVg~ 142 (672)
T PRK14581 126 PLLKAY-KWSAVLAPVGT 142 (672)
T ss_pred HHHHHc-CCCEEEEEech
Confidence 788887 443 3455553
No 466
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=31.05 E-value=1.3e+02 Score=20.87 Aligned_cols=59 Identities=10% Similarity=-0.009 Sum_probs=41.2
Q ss_pred CceeEEEEeCCCCCccHHHHHHHHhcCCCceEEEecCCCcccccCCCchHHHHHHHHHH
Q 024134 211 SVKRDFVGSDKDNCIPKEFQQWMIQNNPVNEVMAIKGADHMAMLSKPQPLSDCFSQIAH 269 (272)
Q Consensus 211 ~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~p~~~~~~i~~fl~ 269 (272)
+.-++++..--|.-.+....+.+.+.+.+.++.+|--+|..+--++-+.+.+.+..++.
T Consensus 39 ~yD~i~lG~w~d~G~~d~~~~~fl~~l~~KkV~lF~T~G~~~~s~~~~~~~~~~~~~~~ 97 (160)
T PF12641_consen 39 DYDLIFLGFWIDKGTPDKDMKEFLKKLKGKKVALFGTAGAGPDSEYAKKILKNVEALLP 97 (160)
T ss_pred CCCEEEEEcCccCCCCCHHHHHHHHHccCCeEEEEEecCCCCchHHHHHHHHHHHHhhc
Confidence 45677777777877777777778777888888888766766544555556666666554
No 467
>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=31.03 E-value=1.5e+02 Score=20.93 Aligned_cols=56 Identities=14% Similarity=0.297 Sum_probs=38.2
Q ss_pred CCeEEEEecCCCcchh------HHhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHh
Q 024134 16 QKHFVLVHGSNHGAWC------WYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASL 81 (272)
Q Consensus 16 ~~~vv~lhG~~~~~~~------~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l 81 (272)
.=.|+|-|..-.+.-+ +..+++.+.++|..+++...- ...+-.+|++||.++.+..
T Consensus 33 SW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRnvKlialS~d----------~vesH~~Wi~DIks~~~~~ 94 (224)
T KOG0854|consen 33 SWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRNVKLIALSVD----------DVESHKDWIKDIKSYAKVK 94 (224)
T ss_pred ceEEEecCcccCCcchhHHHHHHHhhChhhhhcCceEEEeehh----------hHHHHHHHHHHHHHHHhcc
Confidence 3468888987655543 455678888888888876431 2246677888887777665
No 468
>PRK13938 phosphoheptose isomerase; Provisional
Probab=31.02 E-value=1.3e+02 Score=21.74 Aligned_cols=26 Identities=15% Similarity=0.213 Sum_probs=22.7
Q ss_pred cCCCcEEEEEeCcchHHHHHHHhhCc
Q 024134 82 SADEKVILVGHSFGGLSVALAADKFP 107 (272)
Q Consensus 82 ~~~~~~~lvG~S~Gg~~a~~~a~~~p 107 (272)
...++++++|..-.|.+|..++.+..
T Consensus 43 ~~g~rI~i~G~G~S~~~A~~fa~~L~ 68 (196)
T PRK13938 43 RAGARVFMCGNGGSAADAQHFAAELT 68 (196)
T ss_pred HCCCEEEEEeCcHHHHHHHHHHHHcC
Confidence 36699999999999999999998764
No 469
>TIGR00632 vsr DNA mismatch endonuclease Vsr. All proteins in this family for which functions are known are G:T mismatch endonucleases that function in a specialized mismatch repair process used usually to repair G:T mismatches in specific sections of the genome. This family was based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Members of this family typically are found near to a DNA cytosine methyltransferase.
Probab=31.00 E-value=1.2e+02 Score=19.71 Aligned_cols=15 Identities=40% Similarity=0.609 Sum_probs=11.2
Q ss_pred hHHHHHhCCCeEEEE
Q 024134 35 VKPRLEAAGHRVTAM 49 (272)
Q Consensus 35 ~~~~l~~~g~~v~~~ 49 (272)
....|.+.|++|+.+
T Consensus 99 ~~~~L~~~Gw~Vlr~ 113 (117)
T TIGR00632 99 VNSRLQELGWRVLRV 113 (117)
T ss_pred HHHHHHHCcCEEEEE
Confidence 346677789999876
No 470
>COG0337 AroB 3-dehydroquinate synthetase [Amino acid transport and metabolism]
Probab=30.99 E-value=2.9e+02 Score=22.36 Aligned_cols=67 Identities=21% Similarity=0.273 Sum_probs=39.3
Q ss_pred CeEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcCCCcEEEEE
Q 024134 17 KHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSADEKVILVG 91 (272)
Q Consensus 17 ~~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~lvG 91 (272)
..+++++--.-.......+...|...|+.+..+..|.=..+ -+++.+.+ +.+.+-+.+-.++-.++|
T Consensus 34 ~k~~ivtd~~v~~~y~~~~~~~l~~~g~~v~~~~lp~GE~~-------Ksl~~~~~-i~~~ll~~~~~R~s~iia 100 (360)
T COG0337 34 RKVAIVTDETVAPLYLEKLLATLEAAGVEVDSIVLPDGEEY-------KSLETLEK-IYDALLEAGLDRKSTLIA 100 (360)
T ss_pred CeEEEEECchhHHHHHHHHHHHHHhcCCeeeEEEeCCCccc-------ccHHHHHH-HHHHHHHcCCCCCcEEEE
Confidence 36777776555555567788888889999877777632222 25543333 333333332445666664
No 471
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=30.82 E-value=1.3e+02 Score=19.90 Aligned_cols=32 Identities=25% Similarity=0.158 Sum_probs=15.3
Q ss_pred HHHHHHHHHhcCCCcEEEEEeCcchHHHHHHHh
Q 024134 72 EPLLEILASLSADEKVILVGHSFGGLSVALAAD 104 (272)
Q Consensus 72 ~~~~~~i~~l~~~~~~~lvG~S~Gg~~a~~~a~ 104 (272)
..+..++... ..++-++..|+.....+..++.
T Consensus 61 ~~~~~~l~~~-~~~~Dvv~~~~~~~~~~~~~~~ 92 (160)
T PF13579_consen 61 RRLRRLLAAR-RERPDVVHAHSPTAGLVAALAR 92 (160)
T ss_dssp HHHHHHCHHC-T---SEEEEEHHHHHHHHHHHH
T ss_pred HHHHHHHhhh-ccCCeEEEecccchhHHHHHHH
Confidence 3444444222 4455567788865555555554
No 472
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=30.74 E-value=3.2e+02 Score=22.84 Aligned_cols=38 Identities=11% Similarity=0.099 Sum_probs=29.4
Q ss_pred CCCeEEEEecCCCcchh--HHhhHHHHHhCCCeEEEEcCC
Q 024134 15 KQKHFVLVHGSNHGAWC--WYKVKPRLEAAGHRVTAMDLA 52 (272)
Q Consensus 15 ~~~~vv~lhG~~~~~~~--~~~~~~~l~~~g~~v~~~d~~ 52 (272)
.+|.++++-|..+++.. -..++..|.+.|++|..++.-
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D 132 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAAD 132 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 45788888899888765 456778888889998888754
No 473
>PRK08263 short chain dehydrogenase; Provisional
Probab=30.70 E-value=2.4e+02 Score=21.32 Aligned_cols=32 Identities=16% Similarity=0.051 Sum_probs=22.7
Q ss_pred EEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCC
Q 024134 19 FVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLA 52 (272)
Q Consensus 19 vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~ 52 (272)
.+++.|. ++..-..++..|.++|+.|+..+..
T Consensus 5 ~vlItGa--sg~iG~~~a~~l~~~g~~V~~~~r~ 36 (275)
T PRK08263 5 VWFITGA--SRGFGRAWTEAALERGDRVVATARD 36 (275)
T ss_pred EEEEeCC--CChHHHHHHHHHHHCCCEEEEEECC
Confidence 4566654 3444466788888899999998764
No 474
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=30.64 E-value=1.2e+02 Score=22.44 Aligned_cols=38 Identities=18% Similarity=0.129 Sum_probs=27.2
Q ss_pred eEEEEecCCCcchh--HHhhHHHHHhCCCeEEEEcCCCCC
Q 024134 18 HFVLVHGSNHGAWC--WYKVKPRLEAAGHRVTAMDLAASG 55 (272)
Q Consensus 18 ~vv~lhG~~~~~~~--~~~~~~~l~~~g~~v~~~d~~G~G 55 (272)
.|.+..+=|+.+.. -..++..|+++|++|+.+|.-..|
T Consensus 3 iI~v~s~KGGvGKTt~a~nla~~la~~g~~VlliD~D~q~ 42 (246)
T TIGR03371 3 VIAIVGVKGGVGKTTLTANLASALKLLGEPVLAIDLDPQN 42 (246)
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCcc
Confidence 45555655555544 356788898899999999986554
No 475
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=30.52 E-value=1.9e+02 Score=20.07 Aligned_cols=76 Identities=26% Similarity=0.236 Sum_probs=46.3
Q ss_pred CeEEEEecCCCcchhHHhhHHHHHhCCC-eEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcCCCcEEEEEeC-c
Q 024134 17 KHFVLVHGSNHGAWCWYKVKPRLEAAGH-RVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSADEKVILVGHS-F 94 (272)
Q Consensus 17 ~~vv~lhG~~~~~~~~~~~~~~l~~~g~-~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~lvG~S-~ 94 (272)
...+++-|-.... ..+.+...|. +|+.++.+.. ..++.+.+++.+.++++.. + ..++|+|+| .
T Consensus 30 ~v~~v~~G~~~~~-----~~~~~~~~Gad~v~~~~~~~~--------~~~~~~~~a~al~~~i~~~-~-p~~Vl~~~t~~ 94 (168)
T cd01715 30 EVTALVIGSGAEA-----VAAALKAYGADKVLVAEDPAL--------AHYLAEPYAPALVALAKKE-K-PSHILAGATSF 94 (168)
T ss_pred CEEEEEECCChHH-----HHHHHHhcCCCEEEEecChhh--------cccChHHHHHHHHHHHHhc-C-CCEEEECCCcc
Confidence 4555665543211 1344444565 5677654321 1257788888899999876 4 567777754 5
Q ss_pred chHHHHHHHhhCc
Q 024134 95 GGLSVALAADKFP 107 (272)
Q Consensus 95 Gg~~a~~~a~~~p 107 (272)
|.-++-.+|.+..
T Consensus 95 g~~la~rlAa~L~ 107 (168)
T cd01715 95 GKDLAPRVAAKLD 107 (168)
T ss_pred ccchHHHHHHHhC
Confidence 6678888877654
No 476
>PRK05665 amidotransferase; Provisional
Probab=30.34 E-value=84 Score=23.50 Aligned_cols=38 Identities=24% Similarity=0.198 Sum_probs=25.5
Q ss_pred cchhhchHHHHHHHHHhcCCCcEEEEEeCcchHHHHHHH
Q 024134 65 RSFYEYNEPLLEILASLSADEKVILVGHSFGGLSVALAA 103 (272)
Q Consensus 65 ~~~~~~~~~~~~~i~~l~~~~~~~lvG~S~Gg~~a~~~a 103 (272)
++-..+...+.++|+.. -..+.=++|.|+|..+...+.
T Consensus 71 ~~~~pwi~~l~~~i~~~-~~~~~PilGIC~GhQlla~Al 108 (240)
T PRK05665 71 FGTDPWIQTLKTYLLKL-YERGDKLLGVCFGHQLLALLL 108 (240)
T ss_pred cccchHHHHHHHHHHHH-HhcCCCEEEEeHHHHHHHHHh
Confidence 34456777777888776 223345899999997665544
No 477
>PRK04435 hypothetical protein; Provisional
Probab=30.22 E-value=1.8e+02 Score=19.79 Aligned_cols=76 Identities=26% Similarity=0.222 Sum_probs=41.2
Q ss_pred CeEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCC--CCCCCCcccc-cccchhhchHHHHHHHHHhcCCCcEEEEEe
Q 024134 17 KHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLA--ASGINMKKIQ-DVRSFYEYNEPLLEILASLSADEKVILVGH 92 (272)
Q Consensus 17 ~~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~--G~G~s~~~~~-~~~~~~~~~~~~~~~i~~l~~~~~~~lvG~ 92 (272)
..+-+.-........+..+...+++.|.++..+... ..|...-.-. ...+.....+++.+-++.+.+..++-++|.
T Consensus 68 r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~~~~L~~Li~~L~~i~gV~~V~i~~~ 146 (147)
T PRK04435 68 KIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSMEGDIDELLEKLRNLDGVEKVELIGM 146 (147)
T ss_pred cEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCChHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 334333334455667888999999999999998752 1121100000 111222234444444444456677778874
No 478
>TIGR00322 diphth2_R diphthamide biosynthesis protein 2-related domain. Because archaeal species are known to have the diphthamide modification to the conserved His of archaeal and eukaryotic EF-2, it may be that the lone homolog of YKL191W in M. jannaschii, A. fulgidus, and M. thermoautotrophicum is orthologous. However, each of these is considerably shorter than YKL191W and seems more closely related to the uncharacterized protein YIL103W than to YKL191W.
Probab=30.21 E-value=1.1e+02 Score=24.35 Aligned_cols=60 Identities=13% Similarity=0.232 Sum_probs=43.4
Q ss_pred HhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcCCCcEEEEE-eCcchHHHHHHHhh
Q 024134 33 YKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSADEKVILVG-HSFGGLSVALAADK 105 (272)
Q Consensus 33 ~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~lvG-~S~Gg~~a~~~a~~ 105 (272)
...++.+.+.|++-+++.+| ..+...+..+.+.++.. ...++++.| .|+|+.-.-..+++
T Consensus 8 ~~~i~~I~~~~~krV~LQfP------------dgLl~~a~~ia~~l~~~-~~~~v~IlaD~~YGaCcvdd~~a~ 68 (332)
T TIGR00322 8 EKVIGNIRKYNAKRVGLQMP------------EGLKIRALEIAEIIEQF-CGVETVISGDTSFGACDIDDFTAR 68 (332)
T ss_pred HHHHHHHHHcCCCEEEEECC------------HHHHHHHHHHHHHHHhc-cCceEEEEcCCceecCCCCHHHHh
Confidence 46677788889999999987 46667777777888764 346666665 89999866444444
No 479
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.09 E-value=3.2e+02 Score=22.55 Aligned_cols=62 Identities=15% Similarity=0.164 Sum_probs=33.9
Q ss_pred HHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcCCCcEEEEEeCcchHHHHHHHhhCc
Q 024134 36 KPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSADEKVILVGHSFGGLSVALAADKFP 107 (272)
Q Consensus 36 ~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~lvG~S~Gg~~a~~~a~~~p 107 (272)
.+.+.+.+|.+|.+|-.|.-. .-..+-+.+.++.+.+ ....+++|=-+.=|.-+...|..+.
T Consensus 176 v~~fKke~fdvIIvDTSGRh~---------qe~sLfeEM~~v~~ai-~Pd~vi~VmDasiGQaae~Qa~aFk 237 (483)
T KOG0780|consen 176 VDRFKKENFDVIIVDTSGRHK---------QEASLFEEMKQVSKAI-KPDEIIFVMDASIGQAAEAQARAFK 237 (483)
T ss_pred HHHHHhcCCcEEEEeCCCchh---------hhHHHHHHHHHHHhhc-CCCeEEEEEeccccHhHHHHHHHHH
Confidence 355666789999999776432 2234445566666666 4455554433333344444443343
No 480
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=30.03 E-value=2.9e+02 Score=22.20 Aligned_cols=36 Identities=25% Similarity=0.455 Sum_probs=24.3
Q ss_pred CCCeEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCCC
Q 024134 15 KQKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAA 53 (272)
Q Consensus 15 ~~~~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G 53 (272)
.+..|++. |. ++..=..++..|.++||+|+++|.+.
T Consensus 20 ~~~~IlVt-Gg--tGfIG~~l~~~L~~~G~~V~~v~r~~ 55 (370)
T PLN02695 20 EKLRICIT-GA--GGFIASHIARRLKAEGHYIIASDWKK 55 (370)
T ss_pred CCCEEEEE-CC--ccHHHHHHHHHHHhCCCEEEEEEecc
Confidence 34455555 33 33344568888988999999999753
No 481
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=29.93 E-value=69 Score=23.53 Aligned_cols=34 Identities=12% Similarity=0.203 Sum_probs=26.8
Q ss_pred eEEEEecCCCcchh-H-HhhHHHHHhCCCeEEEEcC
Q 024134 18 HFVLVHGSNHGAWC-W-YKVKPRLEAAGHRVTAMDL 51 (272)
Q Consensus 18 ~vv~lhG~~~~~~~-~-~~~~~~l~~~g~~v~~~d~ 51 (272)
++|++.|.++++.. + ..++..|.+++++|+...-
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~k 37 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEK 37 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccch
Confidence 57899999988865 3 5788889888888877654
No 482
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=29.85 E-value=1.4e+02 Score=19.29 Aligned_cols=32 Identities=19% Similarity=0.157 Sum_probs=21.7
Q ss_pred EEEecCCCcchhH--HhhHHHHHhCCCeEEEEcC
Q 024134 20 VLVHGSNHGAWCW--YKVKPRLEAAGHRVTAMDL 51 (272)
Q Consensus 20 v~lhG~~~~~~~~--~~~~~~l~~~g~~v~~~d~ 51 (272)
+.+-|-++..... ..++..|+++|.+|+++|.
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~ 35 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAIDA 35 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 3455556555543 4566778888999999984
No 483
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=29.76 E-value=97 Score=25.18 Aligned_cols=34 Identities=18% Similarity=0.265 Sum_probs=22.6
Q ss_pred EEEecCCCcchh--HHhhHHHHHhCCCeEEEEcCCC
Q 024134 20 VLVHGSNHGAWC--WYKVKPRLEAAGHRVTAMDLAA 53 (272)
Q Consensus 20 v~lhG~~~~~~~--~~~~~~~l~~~g~~v~~~d~~G 53 (272)
+++.|..+++.. ...++..+.++|.+++++|.-|
T Consensus 18 ~li~G~~GsGKT~~i~~ll~~~~~~g~~~iI~D~kg 53 (386)
T PF10412_consen 18 ILIIGATGSGKTQAIRHLLDQIRARGDRAIIYDPKG 53 (386)
T ss_dssp EEEEE-TTSSHHHHHHHHHHHHHHTT-EEEEEEETT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCEEEEEECCc
Confidence 455566555544 4677777777899999999765
No 484
>PLN02752 [acyl-carrier protein] S-malonyltransferase
Probab=29.71 E-value=38 Score=26.83 Aligned_cols=19 Identities=21% Similarity=0.273 Sum_probs=15.3
Q ss_pred EEEEEeCcchHHHHHHHhh
Q 024134 87 VILVGHSFGGLSVALAADK 105 (272)
Q Consensus 87 ~~lvG~S~Gg~~a~~~a~~ 105 (272)
-.++|||+|=..|+.++..
T Consensus 126 ~~~~GHSlGE~aA~~~AG~ 144 (343)
T PLN02752 126 DVCAGLSLGEYTALVFAGA 144 (343)
T ss_pred CeeeeccHHHHHHHHHhCC
Confidence 4689999999888887743
No 485
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=29.59 E-value=2.1e+02 Score=20.34 Aligned_cols=59 Identities=17% Similarity=0.091 Sum_probs=32.0
Q ss_pred CCeEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHH-HHHHHh
Q 024134 16 QKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLL-EILASL 81 (272)
Q Consensus 16 ~~~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~-~~i~~l 81 (272)
+.++++++--.-....-..-+..|.+.|+.++-+.. |+-. ...+++++++.+. .+++.+
T Consensus 112 ~~pv~i~P~~m~~~~~~~~Nl~~L~~~G~~ii~P~~-g~~~------~p~~~~~~~~~i~~~~l~~l 171 (181)
T TIGR00421 112 RRKLVLVPRETPLNSIHLENMLRLSRMGAIILPPMP-AFYT------RPKSVEDMIDFIVGRVLDQL 171 (181)
T ss_pred CCCEEEEeCCCcCCHHHHHHHHHHHHCCCEEECCCC-cccC------CCCCHHHHHHHHHHHHHHHc
Confidence 455666662211111224455678888998876653 3211 1147778777554 455555
No 486
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=29.55 E-value=1.4e+02 Score=20.88 Aligned_cols=22 Identities=41% Similarity=0.555 Sum_probs=9.8
Q ss_pred HHHHHHHhcCCCcEEEEEeCcchH
Q 024134 74 LLEILASLSADEKVILVGHSFGGL 97 (272)
Q Consensus 74 ~~~~i~~l~~~~~~~lvG~S~Gg~ 97 (272)
+.++...+...++ ++=|++||.
T Consensus 123 ~~eL~~~L~~g~~--V~vHC~GGl 144 (168)
T PF05706_consen 123 LEELAARLENGRK--VLVHCRGGL 144 (168)
T ss_dssp HHHHHHHHHTT----EEEE-SSSS
T ss_pred HHHHHHHHHcCCE--EEEECCCCC
Confidence 3344444433343 346899974
No 487
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=29.52 E-value=1.4e+02 Score=18.36 Aligned_cols=68 Identities=22% Similarity=0.179 Sum_probs=44.1
Q ss_pred hhHHhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcCCCcEEEE-E--eCcchHHHHHHHhhC
Q 024134 30 WCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSADEKVILV-G--HSFGGLSVALAADKF 106 (272)
Q Consensus 30 ~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~lv-G--~S~Gg~~a~~~a~~~ 106 (272)
..|......|.++|+.|+.+-..+ .+. ..+.+++...-...+..- +-++++ | .|-|+.+=..+|...
T Consensus 16 ~~f~~~a~~L~~~G~~vvnPa~~~-----~~~--~~~~~~ym~~~l~~L~~c---D~i~~l~gWe~S~GA~~E~~~A~~l 85 (92)
T PF14359_consen 16 PAFNAAAKRLRAKGYEVVNPAELG-----IPE--GLSWEEYMRICLAMLSDC---DAIYMLPGWENSRGARLEHELAKKL 85 (92)
T ss_pred HHHHHHHHHHHHCCCEEeCchhhC-----CCC--CCCHHHHHHHHHHHHHhC---CEEEEcCCcccCcchHHHHHHHHHC
Confidence 346777888989999999876541 111 135555555545555533 555555 4 799999988888765
Q ss_pred c
Q 024134 107 P 107 (272)
Q Consensus 107 p 107 (272)
.
T Consensus 86 G 86 (92)
T PF14359_consen 86 G 86 (92)
T ss_pred C
Confidence 4
No 488
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=29.40 E-value=87 Score=24.72 Aligned_cols=32 Identities=22% Similarity=0.231 Sum_probs=25.1
Q ss_pred CCeEEEEecCCCcchhHHhhHHHHHhCCCeEEEE
Q 024134 16 QKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAM 49 (272)
Q Consensus 16 ~~~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~ 49 (272)
....||+-|..+--..| ++..|-++||+|.+-
T Consensus 5 ~~~~VcVTGAsGfIgsw--ivk~LL~rGY~V~gt 36 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSW--IVKLLLSRGYTVRGT 36 (327)
T ss_pred CCcEEEEeCCchHHHHH--HHHHHHhCCCEEEEE
Confidence 34688998887666665 788888999998875
No 489
>PRK13054 lipid kinase; Reviewed
Probab=29.37 E-value=2.7e+02 Score=21.59 Aligned_cols=32 Identities=19% Similarity=0.315 Sum_probs=24.3
Q ss_pred CeEEEEecCCCcchhHHhhHHHHHhCCCeEEE
Q 024134 17 KHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTA 48 (272)
Q Consensus 17 ~~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~ 48 (272)
..+++++|.+.....|..+.+.|.+.|+.+..
T Consensus 5 ~~~~i~N~~~~~~~~~~~~~~~l~~~g~~~~v 36 (300)
T PRK13054 5 KSLLILNGKSAGNEELREAVGLLREEGHTLHV 36 (300)
T ss_pred eEEEEECCCccchHHHHHHHHHHHHcCCEEEE
Confidence 45788888776667788888889888876543
No 490
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=29.36 E-value=1.4e+02 Score=22.24 Aligned_cols=48 Identities=21% Similarity=0.139 Sum_probs=28.2
Q ss_pred ChhhHHhhhhhhccCCCeEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCC
Q 024134 1 MELTEKVKKMTEAKKQKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLA 52 (272)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~ 52 (272)
||+.+....+-. -.+. .++|-|..+ ..=..+++.|+++|++|+..+..
T Consensus 1 ~~~~~~~~~~~~-l~~k-~vlItGas~--gIG~~ia~~l~~~G~~v~~~~~~ 48 (258)
T PRK06935 1 MELDKFSMDFFS-LDGK-VAIVTGGNT--GLGQGYAVALAKAGADIIITTHG 48 (258)
T ss_pred Cchhhhcccccc-CCCC-EEEEeCCCc--hHHHHHHHHHHHCCCEEEEEeCC
Confidence 566655544322 1223 455555433 33356778888899999988653
No 491
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=29.25 E-value=2.9e+02 Score=21.85 Aligned_cols=78 Identities=19% Similarity=0.204 Sum_probs=40.7
Q ss_pred HHhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHh--cCCCcEEEEEeCcchHHHHHHHhhCcc-
Q 024134 32 WYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASL--SADEKVILVGHSFGGLSVALAADKFPH- 108 (272)
Q Consensus 32 ~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l--~~~~~~~lvG~S~Gg~~a~~~a~~~p~- 108 (272)
+..+...+ .++|.++.+|-+|...... ..-+....+..+++.+ .....+++|-.+.-|.-++.-+..+-+
T Consensus 186 ~~~l~~~~-~~~~D~ViIDTaGr~~~~~------~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f~~~ 258 (318)
T PRK10416 186 FDAIQAAK-ARGIDVLIIDTAGRLHNKT------NLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAFHEA 258 (318)
T ss_pred HHHHHHHH-hCCCCEEEEeCCCCCcCCH------HHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHHHhh
Confidence 34443334 4679999999998755321 1112222333333322 123446677777767766665555422
Q ss_pred -ceeeeeee
Q 024134 109 -KISVAIFL 116 (272)
Q Consensus 109 -~v~~lvl~ 116 (272)
.+.++|+-
T Consensus 259 ~~~~giIlT 267 (318)
T PRK10416 259 VGLTGIILT 267 (318)
T ss_pred CCCCEEEEE
Confidence 25555543
No 492
>PRK00131 aroK shikimate kinase; Reviewed
Probab=29.23 E-value=1.1e+02 Score=20.90 Aligned_cols=34 Identities=12% Similarity=0.024 Sum_probs=21.9
Q ss_pred CCCeEEEEecCCCcchhHHhhHHHHHhC-CCeEEEEc
Q 024134 15 KQKHFVLVHGSNHGAWCWYKVKPRLEAA-GHRVTAMD 50 (272)
Q Consensus 15 ~~~~vv~lhG~~~~~~~~~~~~~~l~~~-g~~v~~~d 50 (272)
+.+..|++.|.++++... ++..|++. |+.++-.|
T Consensus 2 ~~~~~i~l~G~~GsGKst--la~~La~~l~~~~~d~d 36 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKST--IGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCCCeEEEEcCCCCCHHH--HHHHHHHHhCCCEEECh
Confidence 346789999998888753 44444432 56666555
No 493
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=29.20 E-value=1.2e+02 Score=23.72 Aligned_cols=37 Identities=22% Similarity=0.289 Sum_probs=25.0
Q ss_pred hHHHHHHHHHhcCCCcEEEEEeCcchHHHHHHHhhCc
Q 024134 71 NEPLLEILASLSADEKVILVGHSFGGLSVALAADKFP 107 (272)
Q Consensus 71 ~~~~~~~i~~l~~~~~~~lvG~S~Gg~~a~~~a~~~p 107 (272)
.+.+..+.+.+...++++++|..-.|.++..-|...+
T Consensus 49 ~~av~~~~~~l~~ggrI~~~GaGtSg~la~~da~e~~ 85 (299)
T PRK05441 49 AAAVDAAAAALRQGGRLIYIGAGTSGRLGVLDASECP 85 (299)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhCc
Confidence 3334444444446688999999999999966665544
No 494
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=29.19 E-value=2.9e+02 Score=21.95 Aligned_cols=74 Identities=18% Similarity=0.099 Sum_probs=43.7
Q ss_pred CCeEEEEecC--CCcchh--HHhhHHHHHhCCCeEEEEcCCCCCCCCcc-c---ccccchhhchHHHHHHHHHhcCCCcE
Q 024134 16 QKHFVLVHGS--NHGAWC--WYKVKPRLEAAGHRVTAMDLAASGINMKK-I---QDVRSFYEYNEPLLEILASLSADEKV 87 (272)
Q Consensus 16 ~~~vv~lhG~--~~~~~~--~~~~~~~l~~~g~~v~~~d~~G~G~s~~~-~---~~~~~~~~~~~~~~~~i~~l~~~~~~ 87 (272)
.-+||.+-.+ |+++.. -..+++.|.++|+++..+. ||||..... + ....+.++..+.-.-+.+.. + -.
T Consensus 34 ~vpVIsVGNltvGGTGKTP~v~~L~~~L~~~G~~~~IlS-RGYg~~~~~~~~~v~~~~~~~~~GDEp~lla~~~-~--~~ 109 (326)
T PF02606_consen 34 PVPVISVGNLTVGGTGKTPLVIWLARLLQARGYRPAILS-RGYGRKSKGEPILVSDGSDAEEVGDEPLLLARKL-P--VP 109 (326)
T ss_pred CCcEEEEcccccCCCCchHHHHHHHHHHHhcCCceEEEc-CCCCCCCCCCeEEEeCCCChhhhcCHHHHHHHhc-C--Cc
Confidence 3467776544 334332 3567888989999977775 699987553 2 12235555555555555555 3 34
Q ss_pred EEEEeC
Q 024134 88 ILVGHS 93 (272)
Q Consensus 88 ~lvG~S 93 (272)
++||-.
T Consensus 110 V~V~~d 115 (326)
T PF02606_consen 110 VIVGPD 115 (326)
T ss_pred EEEeCc
Confidence 455544
No 495
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=29.14 E-value=3e+02 Score=22.02 Aligned_cols=31 Identities=10% Similarity=0.229 Sum_probs=21.3
Q ss_pred EEEecCCCcchhHH--hhHHHHHhCCCeEEEEc
Q 024134 20 VLVHGSNHGAWCWY--KVKPRLEAAGHRVTAMD 50 (272)
Q Consensus 20 v~lhG~~~~~~~~~--~~~~~l~~~g~~v~~~d 50 (272)
|++-|.|+.++.|. .+++.|.++|++|..+-
T Consensus 4 i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg 36 (352)
T PRK12446 4 IVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIG 36 (352)
T ss_pred EEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEE
Confidence 45556666666664 46688888889887774
No 496
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=29.08 E-value=1.2e+02 Score=23.54 Aligned_cols=35 Identities=20% Similarity=0.280 Sum_probs=19.7
Q ss_pred CCCeEEEEecCCCcchh-----HHhhHHHHHhCCCeEEEE
Q 024134 15 KQKHFVLVHGSNHGAWC-----WYKVKPRLEAAGHRVTAM 49 (272)
Q Consensus 15 ~~~~vv~lhG~~~~~~~-----~~~~~~~l~~~g~~v~~~ 49 (272)
.++.|++.||....... |..+++.|.++|+.++..
T Consensus 178 ~~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~ 217 (319)
T TIGR02193 178 PAPYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLP 217 (319)
T ss_pred CCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEe
Confidence 34566666665544333 445666666556665543
No 497
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=29.01 E-value=3.1e+02 Score=22.17 Aligned_cols=76 Identities=14% Similarity=0.125 Sum_probs=44.6
Q ss_pred cCCCeEEEEecCCCcchhHHhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcCCCcEEE-EEe
Q 024134 14 KKQKHFVLVHGSNHGAWCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSADEKVIL-VGH 92 (272)
Q Consensus 14 ~~~~~vv~lhG~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~l-vG~ 92 (272)
+.+.||++--|...+...|...++.+.+.|-.=+++-.||. |..+.....++ + ...+ ..++.. -.-|+.+ ..|
T Consensus 223 ~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~erg~--s~yp~~~~~~l-d-l~~i-~~lk~~-~~~PV~~d~~H 296 (360)
T PRK12595 223 RVNKPVLLKRGLSATIEEFIYAAEYIMSQGNGQIILCERGI--RTYEKATRNTL-D-ISAV-PILKQE-THLPVMVDVTH 296 (360)
T ss_pred ccCCcEEEeCCCCCCHHHHHHHHHHHHHCCCCCEEEECCcc--CCCCCCCCCCc-C-HHHH-HHHHHH-hCCCEEEeCCC
Confidence 34678999999999999999999999887764333333333 32221110112 1 1112 233333 2246777 699
Q ss_pred Ccc
Q 024134 93 SFG 95 (272)
Q Consensus 93 S~G 95 (272)
|.|
T Consensus 297 s~G 299 (360)
T PRK12595 297 STG 299 (360)
T ss_pred CCc
Confidence 988
No 498
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=29.01 E-value=3.1e+02 Score=24.98 Aligned_cols=71 Identities=17% Similarity=0.118 Sum_probs=43.8
Q ss_pred eEEEEc-----CCCCCCCCcccccccchhhchHHHHHHHHHhc--CCCcEEEEEeCcchHHHHHHHhhCccceeeeeeee
Q 024134 45 RVTAMD-----LAASGINMKKIQDVRSFYEYNEPLLEILASLS--ADEKVILVGHSFGGLSVALAADKFPHKISVAIFLT 117 (272)
Q Consensus 45 ~v~~~d-----~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~--~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~ 117 (272)
.||.+| -|..|.|...- --++..+.++.+-++.+. ..++++++|-+==-= -+.=|...|.|+++++.++
T Consensus 766 CVIFFDELDSlAP~RG~sGDSG---GVMDRVVSQLLAELDgls~~~s~~VFViGATNRPD-LLDpALLRPGRFDKLvyvG 841 (953)
T KOG0736|consen 766 CVIFFDELDSLAPNRGRSGDSG---GVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPD-LLDPALLRPGRFDKLVYVG 841 (953)
T ss_pred eEEEeccccccCccCCCCCCcc---ccHHHHHHHHHHHhhcccCCCCCceEEEecCCCcc-ccChhhcCCCccceeEEec
Confidence 466666 34555554322 256777888888888773 457788888432111 1112335678899999999
Q ss_pred cc
Q 024134 118 AF 119 (272)
Q Consensus 118 ~~ 119 (272)
+.
T Consensus 842 ~~ 843 (953)
T KOG0736|consen 842 PN 843 (953)
T ss_pred CC
Confidence 85
No 499
>PF14252 DUF4347: Domain of unknown function (DUF4347)
Probab=28.93 E-value=1.4e+02 Score=20.91 Aligned_cols=51 Identities=20% Similarity=0.201 Sum_probs=32.4
Q ss_pred hhHHhhHHHHHhCCCeEEEEcCCCCCCCCcccccccchhhchHHHHHHHHHhcCCCcEEEEEeCcch
Q 024134 30 WCWYKVKPRLEAAGHRVTAMDLAASGINMKKIQDVRSFYEYNEPLLEILASLSADEKVILVGHSFGG 96 (272)
Q Consensus 30 ~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~lvG~S~Gg 96 (272)
..|+.+...+. .+..|+.+|.- .+-.+.|.++++...+...+++++|.--|
T Consensus 10 ~d~~~L~~~l~-~~~~v~~ld~~---------------~d~~~qI~~~L~~~~~i~~lhivsHG~~G 60 (165)
T PF14252_consen 10 EDYESLLAGLP-PGVEVVILDPS---------------RDGLEQIAQALAGYQNIDALHIVSHGSPG 60 (165)
T ss_pred CCHHHHHhcCc-CCCEEEEEeCC---------------CchHHHHHHHHhcCCCCceEEEEcCCCcc
Confidence 44666666664 56788888742 22355566666665457888999886444
No 500
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=28.85 E-value=60 Score=26.44 Aligned_cols=34 Identities=24% Similarity=0.384 Sum_probs=0.0
Q ss_pred cCCCcEEEEEeCcchHHHHHHHhhCccceeeeee
Q 024134 82 SADEKVILVGHSFGGLSVALAADKFPHKISVAIF 115 (272)
Q Consensus 82 ~~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl 115 (272)
....+++++|.+.||.-.=..+.++|+.+.++.+
T Consensus 116 ~~~g~~v~~~s~~GGv~iEe~~~~~p~~i~~~~i 149 (392)
T PRK14046 116 RKSERVRVIASARGGMEIEEIAAKEPEAIIQVVV 149 (392)
T ss_pred CCCCcEEEEEeCCCCCchHHHhhhChhheEEEEc
Done!