Query 024135
Match_columns 272
No_of_seqs 306 out of 2625
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 09:16:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024135.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024135hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 2.7E-32 6E-37 227.5 21.2 153 4-175 105-264 (346)
2 KOG0105 Alternative splicing f 100.0 1.3E-29 2.9E-34 184.0 21.4 185 1-188 1-192 (241)
3 TIGR01645 half-pint poly-U bin 100.0 1.4E-29 3E-34 221.9 20.8 169 5-185 106-281 (612)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.5E-29 3.3E-34 215.5 20.7 160 5-185 2-168 (352)
5 TIGR01622 SF-CC1 splicing fact 100.0 1E-28 2.2E-33 217.2 21.2 166 4-177 87-259 (457)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 4.9E-28 1.1E-32 206.2 23.6 178 5-186 88-347 (352)
7 KOG0148 Apoptosis-promoting RN 100.0 9E-29 1.9E-33 189.9 14.5 167 7-178 63-232 (321)
8 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 8.3E-28 1.8E-32 211.4 22.7 160 5-174 1-162 (481)
9 TIGR01628 PABP-1234 polyadenyl 100.0 1.3E-27 2.8E-32 215.0 20.0 151 8-175 2-158 (562)
10 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 4.1E-27 9E-32 206.9 22.1 170 4-175 273-465 (481)
11 TIGR01648 hnRNP-R-Q heterogene 100.0 7.2E-27 1.6E-31 204.6 22.4 174 6-187 58-306 (578)
12 TIGR01642 U2AF_lg U2 snRNP aux 100.0 1.1E-26 2.4E-31 207.0 21.5 170 3-176 172-367 (509)
13 KOG0117 Heterogeneous nuclear 100.0 3.8E-27 8.2E-32 192.6 16.4 172 7-182 84-329 (506)
14 KOG0109 RNA-binding protein LA 99.9 1.2E-27 2.6E-32 185.5 11.0 147 7-183 3-149 (346)
15 TIGR01642 U2AF_lg U2 snRNP aux 99.9 7.2E-26 1.6E-30 201.8 21.6 172 5-176 294-494 (509)
16 TIGR01628 PABP-1234 polyadenyl 99.9 5.9E-26 1.3E-30 204.2 18.2 175 5-180 177-360 (562)
17 KOG0145 RNA-binding protein EL 99.9 5.4E-26 1.2E-30 173.8 14.0 160 4-184 39-205 (360)
18 KOG0131 Splicing factor 3b, su 99.9 1.9E-25 4.1E-30 162.1 14.2 166 4-187 7-180 (203)
19 TIGR01622 SF-CC1 splicing fact 99.9 1.7E-24 3.8E-29 190.5 21.6 174 6-179 186-443 (457)
20 KOG0144 RNA-binding protein CU 99.9 1.3E-25 2.9E-30 182.8 13.1 168 5-192 33-210 (510)
21 KOG0127 Nucleolar protein fibr 99.9 9.5E-25 2.1E-29 182.6 15.2 175 7-185 6-193 (678)
22 KOG0127 Nucleolar protein fibr 99.9 7.7E-24 1.7E-28 177.2 18.9 175 6-180 117-374 (678)
23 KOG0145 RNA-binding protein EL 99.9 3.4E-23 7.4E-28 158.6 15.2 171 6-176 127-350 (360)
24 KOG0106 Alternative splicing f 99.9 7.6E-24 1.6E-28 161.6 11.4 163 7-178 2-165 (216)
25 KOG0124 Polypyrimidine tract-b 99.9 1.2E-23 2.6E-28 168.2 8.4 161 7-175 114-281 (544)
26 KOG0107 Alternative splicing f 99.9 1.1E-21 2.3E-26 141.8 16.2 79 5-85 9-87 (195)
27 KOG0123 Polyadenylate-binding 99.9 7.4E-22 1.6E-26 165.9 17.0 141 7-175 2-144 (369)
28 KOG0107 Alternative splicing f 99.9 8.3E-22 1.8E-26 142.4 14.7 78 108-186 10-87 (195)
29 KOG4206 Spliceosomal protein s 99.9 1.8E-20 3.8E-25 141.7 16.2 171 1-172 4-209 (221)
30 KOG0110 RNA-binding protein (R 99.9 3.4E-21 7.4E-26 166.2 13.5 164 8-185 517-690 (725)
31 KOG4676 Splicing factor, argin 99.9 6.5E-22 1.4E-26 159.5 5.6 166 5-172 6-214 (479)
32 KOG4207 Predicted splicing fac 99.8 2.1E-20 4.5E-25 138.6 12.8 80 5-84 12-94 (256)
33 KOG0148 Apoptosis-promoting RN 99.8 1.6E-20 3.4E-25 144.8 11.1 138 1-188 1-142 (321)
34 KOG1457 RNA binding protein (c 99.8 9.5E-20 2E-24 136.7 14.5 168 6-173 34-275 (284)
35 KOG0123 Polyadenylate-binding 99.8 1E-19 2.2E-24 153.0 15.3 159 3-173 73-235 (369)
36 KOG0147 Transcriptional coacti 99.8 1.4E-20 3.1E-25 158.3 6.6 174 4-183 177-357 (549)
37 TIGR01645 half-pint poly-U bin 99.8 4.5E-18 9.8E-23 149.8 21.5 77 5-81 203-282 (612)
38 KOG0147 Transcriptional coacti 99.8 5.9E-19 1.3E-23 148.6 13.7 172 8-180 280-524 (549)
39 PLN03134 glycine-rich RNA-bind 99.8 1.1E-18 2.3E-23 128.3 13.1 81 5-85 33-116 (144)
40 KOG4205 RNA-binding protein mu 99.8 4.3E-19 9.3E-24 144.2 11.2 162 2-178 2-170 (311)
41 KOG0144 RNA-binding protein CU 99.8 1.8E-18 3.8E-23 141.6 14.3 180 5-184 123-504 (510)
42 KOG0146 RNA-binding protein ET 99.8 2.7E-18 5.8E-23 132.4 12.1 172 5-176 18-357 (371)
43 KOG0113 U1 small nuclear ribon 99.8 1.5E-17 3.2E-22 130.2 15.3 84 3-86 98-184 (335)
44 KOG0121 Nuclear cap-binding pr 99.8 2.8E-18 6.2E-23 117.7 7.2 80 4-83 34-116 (153)
45 KOG4207 Predicted splicing fac 99.7 5.3E-17 1.1E-21 120.7 12.9 74 103-176 8-85 (256)
46 KOG1548 Transcription elongati 99.7 2.3E-16 5.1E-21 125.9 17.4 177 5-181 133-349 (382)
47 KOG0110 RNA-binding protein (R 99.7 9.1E-17 2E-21 139.2 14.3 176 4-182 383-596 (725)
48 PLN03120 nucleic acid binding 99.7 7E-17 1.5E-21 126.8 11.1 78 6-84 4-81 (260)
49 PF00076 RRM_1: RNA recognitio 99.7 3.4E-17 7.4E-22 106.0 7.2 68 9-76 1-70 (70)
50 KOG1190 Polypyrimidine tract-b 99.7 6E-16 1.3E-20 126.1 15.8 167 6-174 297-480 (492)
51 TIGR01648 hnRNP-R-Q heterogene 99.7 1E-16 2.2E-21 141.1 11.9 127 5-136 232-369 (578)
52 KOG4211 Splicing factor hnRNP- 99.7 8.5E-16 1.8E-20 128.2 16.3 158 5-173 9-171 (510)
53 KOG4212 RNA-binding protein hn 99.7 5.1E-15 1.1E-19 121.7 16.8 168 6-173 44-283 (608)
54 PLN03121 nucleic acid binding 99.7 7.5E-16 1.6E-20 119.1 11.1 79 5-84 4-82 (243)
55 COG0724 RNA-binding proteins ( 99.7 3.3E-15 7.1E-20 123.2 14.6 141 6-146 115-263 (306)
56 KOG0114 Predicted RNA-binding 99.6 1.3E-15 2.7E-20 100.8 9.1 78 5-82 17-94 (124)
57 KOG0122 Translation initiation 99.6 8.4E-16 1.8E-20 117.3 9.1 79 4-82 187-268 (270)
58 PF14259 RRM_6: RNA recognitio 99.6 1.1E-15 2.4E-20 98.9 7.5 68 9-76 1-70 (70)
59 TIGR01659 sex-lethal sex-letha 99.6 6.4E-15 1.4E-19 123.5 12.1 81 5-85 192-277 (346)
60 KOG0126 Predicted RNA-binding 99.6 9.2E-17 2E-21 117.0 0.9 84 4-87 33-119 (219)
61 KOG0130 RNA-binding protein RB 99.6 1.4E-15 3.1E-20 105.4 6.4 78 7-84 73-153 (170)
62 KOG0113 U1 small nuclear ribon 99.6 3.6E-14 7.7E-19 111.4 14.8 72 103-174 96-171 (335)
63 KOG0120 Splicing factor U2AF, 99.6 5.8E-15 1.3E-19 126.1 10.7 172 5-176 288-484 (500)
64 PLN03134 glycine-rich RNA-bind 99.6 3.7E-14 8.1E-19 104.3 13.3 79 105-187 31-113 (144)
65 KOG1190 Polypyrimidine tract-b 99.6 1.7E-14 3.6E-19 117.8 11.4 176 3-181 25-223 (492)
66 PLN03213 repressor of silencin 99.6 8E-15 1.7E-19 122.4 9.7 78 3-81 7-86 (759)
67 smart00362 RRM_2 RNA recogniti 99.6 2.6E-14 5.6E-19 92.5 9.1 70 8-77 1-71 (72)
68 KOG1456 Heterogeneous nuclear 99.6 2.4E-13 5.2E-18 109.9 16.3 174 4-179 285-480 (494)
69 KOG0415 Predicted peptidyl pro 99.6 4.5E-15 9.8E-20 119.0 5.6 81 4-84 237-320 (479)
70 KOG0111 Cyclophilin-type pepti 99.6 5.1E-15 1.1E-19 111.2 5.4 83 4-86 8-93 (298)
71 KOG0149 Predicted RNA-binding 99.5 1.3E-14 2.8E-19 110.4 7.0 75 7-82 13-90 (247)
72 KOG0125 Ataxin 2-binding prote 99.5 2.9E-14 6.3E-19 113.3 9.2 81 4-84 94-175 (376)
73 KOG4212 RNA-binding protein hn 99.5 4E-13 8.6E-18 110.7 15.7 75 5-79 214-290 (608)
74 KOG0124 Polypyrimidine tract-b 99.5 5.3E-13 1.1E-17 107.7 16.0 76 6-81 210-288 (544)
75 PF00076 RRM_1: RNA recognitio 99.5 1.1E-13 2.4E-18 89.3 8.9 66 111-176 1-69 (70)
76 cd00590 RRM RRM (RNA recogniti 99.5 2.4E-13 5.2E-18 88.4 9.3 72 8-79 1-74 (74)
77 PF13893 RRM_5: RNA recognitio 99.5 2.3E-13 4.9E-18 83.7 8.0 56 23-80 1-56 (56)
78 smart00360 RRM RNA recognition 99.5 3.1E-13 6.7E-18 87.0 8.1 67 11-77 1-70 (71)
79 KOG1456 Heterogeneous nuclear 99.5 1.4E-11 3E-16 99.8 19.0 176 3-181 117-360 (494)
80 KOG0129 Predicted RNA-binding 99.5 3.5E-12 7.6E-17 107.6 15.4 165 5-173 258-444 (520)
81 KOG0108 mRNA cleavage and poly 99.4 3.3E-13 7.2E-18 114.8 9.1 78 7-84 19-99 (435)
82 KOG0117 Heterogeneous nuclear 99.4 3.4E-13 7.4E-18 111.4 7.5 76 7-87 260-335 (506)
83 PLN03120 nucleic acid binding 99.4 2.7E-12 5.9E-17 101.1 10.5 68 108-176 4-72 (260)
84 KOG0105 Alternative splicing f 99.4 4.3E-12 9.3E-17 93.2 9.5 79 107-189 5-84 (241)
85 KOG0109 RNA-binding protein LA 99.4 7.6E-13 1.6E-17 103.7 5.7 75 4-83 76-150 (346)
86 KOG0122 Translation initiation 99.4 8E-12 1.7E-16 95.7 10.9 81 104-188 185-269 (270)
87 KOG0130 RNA-binding protein RB 99.4 3.3E-12 7.2E-17 88.9 8.0 76 106-185 70-149 (170)
88 KOG0121 Nuclear cap-binding pr 99.4 2.5E-12 5.4E-17 88.7 7.0 77 106-186 34-114 (153)
89 smart00361 RRM_1 RNA recogniti 99.4 4.5E-12 9.9E-17 81.6 7.5 58 20-77 2-69 (70)
90 PF14259 RRM_6: RNA recognitio 99.3 5.3E-12 1.1E-16 81.5 7.7 65 111-175 1-68 (70)
91 KOG0132 RNA polymerase II C-te 99.3 2.6E-12 5.7E-17 112.8 8.0 79 4-85 419-497 (894)
92 KOG4454 RNA binding protein (R 99.3 1.5E-12 3.3E-17 98.0 4.1 139 5-172 8-151 (267)
93 PLN03213 repressor of silencin 99.3 1.5E-11 3.4E-16 103.1 9.6 76 106-185 8-85 (759)
94 KOG0120 Splicing factor U2AF, 99.3 1.8E-11 4E-16 104.9 9.7 171 4-178 173-363 (500)
95 PLN03121 nucleic acid binding 99.3 3E-11 6.5E-16 93.7 9.8 67 108-175 5-72 (243)
96 KOG1365 RNA-binding protein Fu 99.3 2.2E-11 4.8E-16 99.0 9.3 170 6-176 161-354 (508)
97 KOG0114 Predicted RNA-binding 99.3 5.5E-11 1.2E-15 79.0 8.9 77 104-184 14-91 (124)
98 smart00362 RRM_2 RNA recogniti 99.3 7.8E-11 1.7E-15 75.9 9.5 66 110-175 1-68 (72)
99 KOG0125 Ataxin 2-binding prote 99.3 6.4E-11 1.4E-15 94.5 10.5 72 105-176 93-166 (376)
100 KOG0112 Large RNA-binding prot 99.2 6.8E-12 1.5E-16 111.9 4.8 155 4-183 370-526 (975)
101 KOG0415 Predicted peptidyl pro 99.2 2.8E-11 6E-16 97.5 7.7 74 104-177 235-312 (479)
102 KOG0149 Predicted RNA-binding 99.2 5.4E-11 1.2E-15 90.9 7.6 73 107-180 11-87 (247)
103 KOG0146 RNA-binding protein ET 99.2 4.4E-11 9.5E-16 92.9 5.7 82 3-84 282-366 (371)
104 smart00360 RRM RNA recognition 99.2 3.2E-10 6.9E-15 72.7 8.4 63 113-175 1-67 (71)
105 KOG0153 Predicted RNA-binding 99.1 2.2E-10 4.7E-15 92.2 8.6 77 3-82 225-302 (377)
106 cd00590 RRM RRM (RNA recogniti 99.1 6.3E-10 1.4E-14 72.0 9.3 66 110-175 1-69 (74)
107 KOG0131 Splicing factor 3b, su 99.1 2.1E-10 4.5E-15 84.3 6.4 79 6-84 96-178 (203)
108 KOG4208 Nucleolar RNA-binding 99.1 6.1E-10 1.3E-14 83.6 7.9 79 5-83 48-130 (214)
109 KOG4661 Hsp27-ERE-TATA-binding 99.1 9.2E-10 2E-14 94.1 9.3 80 6-85 405-487 (940)
110 PF13893 RRM_5: RNA recognitio 99.0 1.8E-09 3.8E-14 66.2 7.6 52 125-177 1-52 (56)
111 KOG0533 RRM motif-containing p 99.0 2.3E-09 5E-14 84.4 8.5 80 5-84 82-163 (243)
112 PF04059 RRM_2: RNA recognitio 99.0 4.7E-09 1E-13 70.8 8.6 75 7-81 2-85 (97)
113 KOG0126 Predicted RNA-binding 99.0 7E-11 1.5E-15 86.6 -0.8 69 108-176 35-107 (219)
114 KOG0111 Cyclophilin-type pepti 99.0 7.3E-10 1.6E-14 83.8 4.3 71 108-178 10-84 (298)
115 KOG0151 Predicted splicing reg 98.9 3.8E-09 8.2E-14 92.5 8.6 77 5-81 173-255 (877)
116 KOG4211 Splicing factor hnRNP- 98.9 5.3E-08 1.2E-12 82.2 14.4 167 5-174 102-348 (510)
117 KOG4660 Protein Mei2, essentia 98.9 1.1E-09 2.4E-14 93.5 4.4 165 3-173 72-239 (549)
118 KOG0128 RNA-binding protein SA 98.9 1.9E-10 4.2E-15 102.4 -0.8 136 5-176 666-807 (881)
119 KOG0108 mRNA cleavage and poly 98.9 4.8E-09 1E-13 89.7 7.6 76 109-188 19-98 (435)
120 COG0724 RNA-binding proteins ( 98.9 1.4E-08 3.1E-13 83.4 9.7 69 108-176 115-187 (306)
121 smart00361 RRM_1 RNA recogniti 98.9 1.3E-08 2.8E-13 65.4 7.1 55 122-176 2-67 (70)
122 KOG0116 RasGAP SH3 binding pro 98.9 6.2E-09 1.3E-13 88.5 7.0 74 7-81 289-365 (419)
123 KOG4210 Nuclear localization s 98.9 5.9E-09 1.3E-13 85.1 6.5 169 5-188 87-264 (285)
124 KOG0106 Alternative splicing f 98.8 3.1E-08 6.8E-13 76.4 9.7 70 109-186 2-71 (216)
125 KOG4205 RNA-binding protein mu 98.8 6.8E-09 1.5E-13 85.1 5.9 81 6-87 97-180 (311)
126 PF11608 Limkain-b1: Limkain b 98.8 3.3E-08 7.2E-13 63.4 7.6 71 7-84 3-78 (90)
127 KOG4209 Splicing factor RNPS1, 98.8 7.8E-09 1.7E-13 81.6 5.7 79 4-83 99-180 (231)
128 KOG2193 IGF-II mRNA-binding pr 98.8 8.4E-10 1.8E-14 91.1 0.1 143 7-175 2-148 (584)
129 KOG4661 Hsp27-ERE-TATA-binding 98.7 1.4E-07 3.1E-12 81.0 9.7 74 107-184 404-481 (940)
130 KOG0153 Predicted RNA-binding 98.7 1.3E-07 2.8E-12 76.5 8.3 80 102-187 222-302 (377)
131 KOG4676 Splicing factor, argin 98.7 9.7E-09 2.1E-13 84.1 1.9 63 7-71 152-214 (479)
132 KOG1457 RNA binding protein (c 98.5 8E-08 1.7E-12 73.1 4.1 66 4-70 208-273 (284)
133 KOG0226 RNA-binding proteins [ 98.5 2.6E-07 5.6E-12 71.8 6.4 155 9-176 99-262 (290)
134 KOG0533 RRM motif-containing p 98.5 5.1E-07 1.1E-11 71.3 8.0 72 108-179 83-157 (243)
135 KOG0132 RNA polymerase II C-te 98.5 7.7E-07 1.7E-11 79.2 9.7 72 106-179 419-490 (894)
136 KOG2202 U2 snRNP splicing fact 98.5 1.5E-07 3.2E-12 73.4 4.6 61 21-81 83-146 (260)
137 KOG4206 Spliceosomal protein s 98.5 9.9E-07 2.1E-11 67.6 8.3 70 107-176 8-82 (221)
138 KOG0116 RasGAP SH3 binding pro 98.5 2.6E-06 5.6E-11 72.8 11.5 76 107-187 287-366 (419)
139 KOG1365 RNA-binding protein Fu 98.5 4.9E-06 1.1E-10 68.5 12.4 158 4-165 58-225 (508)
140 KOG4307 RNA binding protein RB 98.4 1.1E-06 2.3E-11 77.4 9.0 173 5-183 310-509 (944)
141 KOG0226 RNA-binding proteins [ 98.4 3.3E-07 7.2E-12 71.2 4.4 74 7-80 191-267 (290)
142 PF08777 RRM_3: RNA binding mo 98.3 1.3E-06 2.9E-11 60.4 6.0 70 7-79 2-76 (105)
143 KOG4208 Nucleolar RNA-binding 98.3 3.6E-06 7.8E-11 63.6 7.8 76 103-178 44-124 (214)
144 KOG4454 RNA binding protein (R 98.3 5.2E-07 1.1E-11 68.6 2.6 72 105-176 6-79 (267)
145 KOG4660 Protein Mei2, essentia 98.2 2.6E-06 5.7E-11 73.3 5.0 70 106-176 73-142 (549)
146 PF14605 Nup35_RRM_2: Nup53/35 98.1 8.1E-06 1.8E-10 48.9 5.3 53 6-62 1-53 (53)
147 KOG3152 TBP-binding protein, a 98.1 1.4E-06 3.1E-11 67.8 2.5 69 6-74 74-157 (278)
148 KOG0151 Predicted splicing reg 98.1 1.1E-05 2.4E-10 71.4 8.2 69 105-173 171-246 (877)
149 KOG1548 Transcription elongati 98.1 3.2E-05 6.9E-10 63.0 9.9 79 103-185 129-218 (382)
150 PF08777 RRM_3: RNA binding mo 98.1 7.6E-06 1.6E-10 56.6 5.5 59 109-169 2-60 (105)
151 KOG1995 Conserved Zn-finger pr 98.1 4.5E-06 9.8E-11 68.3 4.3 79 5-83 65-154 (351)
152 PF11608 Limkain-b1: Limkain b 98.0 6.2E-05 1.3E-09 48.6 8.3 67 109-185 3-74 (90)
153 KOG1855 Predicted RNA-binding 98.0 1E-05 2.2E-10 67.6 4.9 64 5-68 230-309 (484)
154 PF04059 RRM_2: RNA recognitio 98.0 0.00011 2.5E-09 49.7 9.1 66 109-174 2-73 (97)
155 KOG2416 Acinus (induces apopto 98.0 7.2E-06 1.6E-10 71.1 4.1 75 4-81 442-520 (718)
156 COG5175 MOT2 Transcriptional r 97.9 3.5E-05 7.7E-10 62.5 7.2 76 6-81 114-201 (480)
157 KOG4210 Nuclear localization s 97.9 1.4E-05 3E-10 65.5 5.1 81 3-84 181-265 (285)
158 PF05172 Nup35_RRM: Nup53/35/4 97.9 6.1E-05 1.3E-09 51.3 7.3 74 5-80 5-89 (100)
159 KOG4307 RNA binding protein RB 97.9 6E-05 1.3E-09 66.8 8.7 76 4-79 864-943 (944)
160 KOG4849 mRNA cleavage factor I 97.8 1.7E-05 3.6E-10 64.6 3.8 72 7-78 81-157 (498)
161 KOG4209 Splicing factor RNPS1, 97.8 3.4E-05 7.4E-10 61.1 5.3 71 106-177 99-173 (231)
162 KOG2314 Translation initiation 97.8 6.2E-05 1.3E-09 65.2 6.6 76 6-81 58-142 (698)
163 KOG0129 Predicted RNA-binding 97.8 0.00012 2.6E-09 62.8 8.1 60 4-63 368-431 (520)
164 KOG0115 RNA-binding protein p5 97.7 0.00015 3.3E-09 56.8 6.6 101 57-183 6-109 (275)
165 KOG1996 mRNA splicing factor [ 97.7 0.00014 3E-09 58.1 6.2 60 21-80 301-364 (378)
166 PF14605 Nup35_RRM_2: Nup53/35 97.6 0.0002 4.3E-09 42.9 5.1 52 109-163 2-53 (53)
167 KOG0128 RNA-binding protein SA 97.6 4.8E-06 1E-10 75.1 -3.1 155 8-172 573-735 (881)
168 PF08952 DUF1866: Domain of un 97.6 0.0006 1.3E-08 49.4 7.9 56 22-83 52-107 (146)
169 KOG0112 Large RNA-binding prot 97.5 0.00018 4E-09 65.6 5.7 81 3-86 452-534 (975)
170 KOG3152 TBP-binding protein, a 97.4 0.00011 2.4E-09 57.5 2.8 68 108-175 74-157 (278)
171 KOG2202 U2 snRNP splicing fact 97.3 0.0004 8.6E-09 54.6 5.1 58 123-180 83-144 (260)
172 PF08675 RNA_bind: RNA binding 97.3 0.0021 4.6E-08 41.6 6.9 54 7-66 10-63 (87)
173 PF07576 BRAP2: BRCA1-associat 97.2 0.0037 8.1E-08 43.5 8.1 67 5-71 12-80 (110)
174 PF05172 Nup35_RRM: Nup53/35/4 97.1 0.0025 5.5E-08 43.4 6.3 65 108-174 6-81 (100)
175 PF15023 DUF4523: Protein of u 97.1 0.0054 1.2E-07 44.0 8.0 73 4-81 84-160 (166)
176 KOG1995 Conserved Zn-finger pr 97.0 0.00095 2.1E-08 55.0 4.6 73 105-177 63-147 (351)
177 COG5175 MOT2 Transcriptional r 97.0 0.0021 4.5E-08 52.5 6.4 76 103-178 109-197 (480)
178 KOG1855 Predicted RNA-binding 97.0 0.00077 1.7E-08 56.7 4.0 66 104-169 227-309 (484)
179 PF03467 Smg4_UPF3: Smg-4/UPF3 96.9 0.00095 2.1E-08 50.9 3.4 82 4-85 5-100 (176)
180 PF08675 RNA_bind: RNA binding 96.8 0.0056 1.2E-07 39.7 6.0 55 109-168 10-64 (87)
181 KOG2314 Translation initiation 96.8 0.0045 9.7E-08 54.1 7.0 67 108-174 58-133 (698)
182 KOG1996 mRNA splicing factor [ 96.7 0.0058 1.3E-07 49.1 6.7 56 122-177 300-360 (378)
183 PF10309 DUF2414: Protein of u 96.7 0.016 3.4E-07 35.6 6.8 54 6-65 5-62 (62)
184 KOG0804 Cytoplasmic Zn-finger 96.6 0.0089 1.9E-07 50.9 7.0 68 5-72 73-142 (493)
185 KOG2253 U1 snRNP complex, subu 96.6 0.0015 3.2E-08 58.1 2.4 120 5-131 39-158 (668)
186 PF08952 DUF1866: Domain of un 96.5 0.017 3.8E-07 41.9 7.1 54 123-181 51-104 (146)
187 PF04847 Calcipressin: Calcipr 96.4 0.018 4E-07 44.0 7.1 63 18-83 7-71 (184)
188 KOG2591 c-Mpl binding protein, 96.2 0.0086 1.9E-07 52.3 5.1 71 4-78 173-247 (684)
189 KOG4285 Mitotic phosphoprotein 96.2 0.018 3.8E-07 46.6 6.4 67 8-79 199-266 (350)
190 KOG0115 RNA-binding protein p5 96.2 0.0065 1.4E-07 47.9 3.9 74 7-80 32-111 (275)
191 KOG2135 Proteins containing th 96.2 0.0033 7.2E-08 53.7 2.4 74 5-82 371-445 (526)
192 KOG0835 Cyclin L [General func 96.1 0.011 2.5E-07 48.3 5.0 23 45-68 173-195 (367)
193 KOG2068 MOT2 transcription fac 96.1 0.0026 5.7E-08 52.1 1.5 75 7-81 78-161 (327)
194 PF03880 DbpA: DbpA RNA bindin 96.0 0.043 9.3E-07 35.3 6.7 66 8-80 2-74 (74)
195 PF10309 DUF2414: Protein of u 96.0 0.071 1.5E-06 32.8 6.9 54 109-166 6-62 (62)
196 KOG2591 c-Mpl binding protein, 95.7 0.043 9.3E-07 48.1 7.2 93 56-176 148-244 (684)
197 KOG4849 mRNA cleavage factor I 95.7 0.011 2.4E-07 48.7 3.4 68 107-174 79-152 (498)
198 KOG0835 Cyclin L [General func 95.1 0.037 8E-07 45.4 4.5 11 119-129 212-222 (367)
199 KOG2318 Uncharacterized conser 95.0 0.15 3.3E-06 45.0 8.1 81 3-83 171-308 (650)
200 KOG2888 Putative RNA binding p 94.9 0.015 3.2E-07 47.6 1.7 12 122-133 226-237 (453)
201 KOG2416 Acinus (induces apopto 94.5 0.029 6.3E-07 49.6 2.7 66 105-172 441-507 (718)
202 PF07576 BRAP2: BRCA1-associat 94.3 0.75 1.6E-05 32.1 8.8 65 109-173 14-81 (110)
203 PF03467 Smg4_UPF3: Smg-4/UPF3 94.2 0.091 2E-06 40.1 4.7 70 107-176 6-85 (176)
204 KOG2888 Putative RNA binding p 93.9 0.025 5.5E-07 46.2 1.1 13 248-260 389-401 (453)
205 PF10567 Nab6_mRNP_bdg: RNA-re 93.8 3.1 6.7E-05 34.0 12.5 162 6-168 15-213 (309)
206 PF11767 SET_assoc: Histone ly 93.6 0.49 1.1E-05 29.5 6.2 55 17-77 11-65 (66)
207 PF06495 Transformer: Fruit fl 93.6 0.09 2E-06 39.0 3.3 6 251-256 102-107 (182)
208 KOG4574 RNA-binding protein (c 93.2 0.07 1.5E-06 49.2 2.7 69 12-83 304-374 (1007)
209 PF07292 NID: Nmi/IFP 35 domai 92.0 0.32 7E-06 32.3 4.0 72 48-129 1-73 (88)
210 KOG2193 IGF-II mRNA-binding pr 92.0 0.006 1.3E-07 51.5 -5.0 77 6-82 80-156 (584)
211 PF15023 DUF4523: Protein of u 91.6 1.1 2.4E-05 32.4 6.6 61 106-169 84-148 (166)
212 KOG2068 MOT2 transcription fac 91.4 0.14 3.1E-06 42.2 2.3 69 107-175 76-154 (327)
213 KOG4285 Mitotic phosphoprotein 91.2 1.4 3E-05 36.1 7.4 63 108-174 197-259 (350)
214 KOG2253 U1 snRNP complex, subu 90.5 0.43 9.2E-06 43.1 4.5 67 104-175 36-102 (668)
215 KOG0804 Cytoplasmic Zn-finger 90.4 1.5 3.3E-05 37.9 7.4 66 108-173 74-142 (493)
216 PF14111 DUF4283: Domain of un 89.3 0.48 1.1E-05 35.0 3.5 120 9-144 18-141 (153)
217 KOG2135 Proteins containing th 89.3 0.32 7E-06 42.1 2.7 69 107-178 371-440 (526)
218 KOG4483 Uncharacterized conser 87.4 1.3 2.9E-05 37.6 5.0 60 6-70 391-451 (528)
219 KOG4019 Calcineurin-mediated s 86.5 0.78 1.7E-05 34.6 2.9 76 7-85 11-92 (193)
220 PF04847 Calcipressin: Calcipr 85.7 3 6.5E-05 32.1 5.9 56 121-178 8-65 (184)
221 PF03880 DbpA: DbpA RNA bindin 85.4 5.2 0.00011 25.5 6.1 56 118-178 11-71 (74)
222 KOG1295 Nonsense-mediated deca 85.4 0.83 1.8E-05 38.6 2.9 67 5-71 6-78 (376)
223 KOG4246 Predicted DNA-binding 82.8 0.41 8.8E-06 44.4 0.1 27 107-133 144-176 (1194)
224 PF03468 XS: XS domain; Inter 82.7 1.2 2.7E-05 31.3 2.5 56 8-63 10-75 (116)
225 KOG4574 RNA-binding protein (c 82.5 0.77 1.7E-05 42.8 1.7 55 116-172 306-360 (1007)
226 COG5638 Uncharacterized conser 80.4 7.8 0.00017 33.3 6.7 37 3-39 143-184 (622)
227 PF15513 DUF4651: Domain of un 78.8 5.2 0.00011 24.5 3.9 19 21-39 9-27 (62)
228 KOG4410 5-formyltetrahydrofola 78.3 3.8 8.2E-05 33.3 4.1 49 6-56 330-378 (396)
229 PF14893 PNMA: PNMA 72.8 4.8 0.0001 34.0 3.6 54 1-54 13-71 (331)
230 PF11767 SET_assoc: Histone ly 72.7 20 0.00043 22.4 5.5 50 119-173 11-60 (66)
231 PRK14548 50S ribosomal protein 72.4 20 0.00044 23.6 5.8 55 9-63 23-79 (84)
232 KOG2295 C2H2 Zn-finger protein 72.1 0.51 1.1E-05 41.7 -2.2 67 5-71 230-299 (648)
233 KOG3580 Tight junction protein 70.5 26 0.00056 32.0 7.6 42 102-143 55-97 (1027)
234 PF07292 NID: Nmi/IFP 35 domai 69.2 2.7 5.8E-05 28.0 1.1 26 3-28 49-74 (88)
235 PF09707 Cas_Cas2CT1978: CRISP 68.5 12 0.00027 24.7 4.1 49 5-53 24-72 (86)
236 KOG4410 5-formyltetrahydrofola 68.1 46 0.00099 27.3 7.9 51 105-156 327-377 (396)
237 PRK14548 50S ribosomal protein 67.3 33 0.00071 22.6 5.9 56 111-166 23-81 (84)
238 KOG4365 Uncharacterized conser 66.7 1.1 2.3E-05 38.6 -1.4 75 6-81 3-80 (572)
239 TIGR03636 L23_arch archaeal ri 66.6 32 0.0007 22.2 6.0 56 8-63 15-72 (77)
240 KOG2318 Uncharacterized conser 66.2 48 0.001 30.1 8.4 69 106-174 172-296 (650)
241 TIGR03636 L23_arch archaeal ri 65.9 33 0.00073 22.1 6.0 57 110-166 15-74 (77)
242 KOG2891 Surface glycoprotein [ 63.6 9.6 0.00021 30.9 3.4 66 5-70 148-247 (445)
243 KOG4483 Uncharacterized conser 58.7 29 0.00063 29.9 5.5 55 108-165 391-446 (528)
244 PF02714 DUF221: Domain of unk 55.1 30 0.00066 29.1 5.4 55 48-129 1-55 (325)
245 KOG2812 Uncharacterized conser 54.7 16 0.00035 30.8 3.4 10 253-262 88-97 (426)
246 PRK11558 putative ssRNA endonu 54.5 26 0.00056 23.8 3.8 51 5-55 26-76 (97)
247 PF03439 Spt5-NGN: Early trans 53.9 33 0.00071 22.5 4.2 36 32-69 33-68 (84)
248 KOG4008 rRNA processing protei 53.7 13 0.00028 29.5 2.5 35 4-38 38-72 (261)
249 KOG4213 RNA-binding protein La 53.6 19 0.00041 27.3 3.3 46 18-63 118-168 (205)
250 PTZ00191 60S ribosomal protein 52.7 64 0.0014 23.7 5.8 56 8-63 83-140 (145)
251 KOG1295 Nonsense-mediated deca 51.7 21 0.00045 30.6 3.6 64 109-172 8-78 (376)
252 PF15063 TC1: Thyroid cancer p 51.1 10 0.00022 24.1 1.4 26 9-34 28-53 (79)
253 KOG2187 tRNA uracil-5-methyltr 49.7 12 0.00026 33.4 2.1 73 11-85 30-103 (534)
254 PF11411 DNA_ligase_IV: DNA li 46.4 16 0.00035 19.6 1.5 17 16-32 19-35 (36)
255 PF02829 3H: 3H domain; Inter 46.3 59 0.0013 22.1 4.6 50 18-67 9-58 (98)
256 KOG2146 Splicing coactivator S 45.3 82 0.0018 26.0 5.9 30 49-78 56-86 (354)
257 PF07530 PRE_C2HC: Associated 44.8 77 0.0017 19.9 5.1 59 21-82 2-64 (68)
258 PF10567 Nab6_mRNP_bdg: RNA-re 44.6 76 0.0016 26.3 5.6 56 107-162 14-80 (309)
259 TIGR01873 cas_CT1978 CRISPR-as 44.5 42 0.00091 22.3 3.5 50 5-54 24-74 (87)
260 CHL00123 rps6 ribosomal protei 42.7 95 0.0021 21.0 5.2 55 8-64 10-81 (97)
261 PF08544 GHMP_kinases_C: GHMP 42.3 89 0.0019 19.9 6.4 45 122-167 36-80 (85)
262 PF00403 HMA: Heavy-metal-asso 42.1 75 0.0016 18.9 6.2 53 8-63 1-57 (62)
263 PTZ00191 60S ribosomal protein 40.6 1.3E+02 0.0028 22.2 5.8 58 109-166 82-142 (145)
264 PRK08559 nusG transcription an 39.2 1.3E+02 0.0029 22.2 6.0 33 33-67 36-68 (153)
265 smart00596 PRE_C2HC PRE_C2HC d 38.9 1E+02 0.0022 19.5 4.6 58 21-81 2-63 (69)
266 cd04889 ACT_PDH-BS-like C-term 38.8 80 0.0017 18.3 5.5 42 21-62 13-55 (56)
267 PRK11634 ATP-dependent RNA hel 37.6 1.1E+02 0.0025 28.6 6.5 60 17-82 498-562 (629)
268 KOG4019 Calcineurin-mediated s 37.5 30 0.00066 26.3 2.3 64 109-174 11-79 (193)
269 PF11823 DUF3343: Protein of u 35.3 50 0.0011 20.8 2.8 28 46-73 2-29 (73)
270 COG5227 SMT3 Ubiquitin-like pr 33.4 1.4E+02 0.0029 20.0 4.5 64 3-67 31-100 (103)
271 KOG4008 rRNA processing protei 33.4 29 0.00062 27.6 1.7 32 109-140 41-72 (261)
272 KOG0156 Cytochrome P450 CYP2 s 33.4 1E+02 0.0022 27.9 5.3 59 10-75 36-97 (489)
273 PF12829 Mhr1: Transcriptional 32.9 1.1E+02 0.0024 20.5 4.1 54 12-66 18-72 (91)
274 PRK11901 hypothetical protein; 32.0 2E+02 0.0044 24.3 6.4 59 108-170 245-308 (327)
275 PF14111 DUF4283: Domain of un 31.1 55 0.0012 23.8 2.9 32 9-40 107-139 (153)
276 PF08156 NOP5NT: NOP5NT (NUC12 30.8 16 0.00034 22.9 -0.1 39 21-66 27-65 (67)
277 COG0030 KsgA Dimethyladenosine 30.8 75 0.0016 26.0 3.7 27 7-33 96-122 (259)
278 PRK10629 EnvZ/OmpR regulon mod 30.1 2.1E+02 0.0046 20.5 8.1 71 5-80 34-108 (127)
279 COG3254 Uncharacterized conser 29.3 1.9E+02 0.0042 19.9 5.6 42 21-63 27-69 (105)
280 PF05189 RTC_insert: RNA 3'-te 29.1 1.2E+02 0.0025 20.7 4.0 46 8-53 12-65 (103)
281 COG5507 Uncharacterized conser 27.6 59 0.0013 22.0 2.1 21 45-65 66-86 (117)
282 KOG2295 C2H2 Zn-finger protein 27.4 12 0.00026 33.5 -1.3 68 106-173 229-300 (648)
283 PRK11230 glycolate oxidase sub 26.8 2.2E+02 0.0048 25.8 6.4 48 19-66 202-255 (499)
284 PF08206 OB_RNB: Ribonuclease 26.7 35 0.00076 20.5 1.0 37 43-80 6-43 (58)
285 PF00937 Corona_nucleoca: Coro 26.4 23 0.00049 30.2 0.1 13 108-120 94-106 (355)
286 PF14026 DUF4242: Protein of u 26.3 1.8E+02 0.004 18.6 8.3 60 111-171 3-71 (77)
287 PRK11634 ATP-dependent RNA hel 26.1 5.6E+02 0.012 24.1 11.3 56 117-177 496-556 (629)
288 cd00027 BRCT Breast Cancer Sup 26.1 1.1E+02 0.0023 18.0 3.2 27 7-33 2-28 (72)
289 PF15407 Spo7_2_N: Sporulation 26.0 22 0.00048 22.3 -0.0 24 4-27 25-48 (67)
290 PF01071 GARS_A: Phosphoribosy 26.0 2.4E+02 0.0053 21.9 5.6 48 18-66 24-71 (194)
291 PF08442 ATP-grasp_2: ATP-gras 25.9 1.8E+02 0.004 22.7 5.0 54 18-71 25-81 (202)
292 PF12091 DUF3567: Protein of u 25.5 88 0.0019 20.6 2.6 17 118-134 60-76 (85)
293 COG0018 ArgS Arginyl-tRNA synt 25.5 5.4E+02 0.012 24.0 8.6 99 19-144 59-166 (577)
294 COG5193 LHP1 La protein, small 25.5 37 0.00081 29.3 1.2 58 7-64 175-245 (438)
295 PRK15464 cold shock-like prote 24.6 53 0.0012 20.7 1.5 12 43-54 14-25 (70)
296 PF05036 SPOR: Sporulation rel 24.0 39 0.00084 21.0 0.8 60 7-66 5-65 (76)
297 PF00398 RrnaAD: Ribosomal RNA 24.0 64 0.0014 26.3 2.3 28 6-33 97-126 (262)
298 PF08734 GYD: GYD domain; Int 23.6 2.3E+02 0.005 18.8 6.1 48 121-168 21-69 (91)
299 TIGR00405 L26e_arch ribosomal 23.6 2.9E+02 0.0063 20.0 5.8 28 40-67 33-60 (145)
300 PRK05192 tRNA uridine 5-carbox 22.6 1.1E+02 0.0025 28.5 3.8 40 3-42 298-337 (618)
301 PRK10943 cold shock-like prote 22.5 65 0.0014 20.2 1.6 12 43-54 13-24 (69)
302 PRK09937 stationary phase/star 22.3 71 0.0015 20.4 1.8 11 44-54 12-22 (74)
303 TIGR02381 cspD cold shock doma 22.0 71 0.0015 19.9 1.7 39 44-83 12-56 (68)
304 PRK09507 cspE cold shock prote 21.9 67 0.0015 20.1 1.6 11 44-54 14-24 (69)
305 PRK14998 cold shock-like prote 21.9 74 0.0016 20.2 1.8 11 44-54 12-22 (73)
306 PRK15463 cold shock-like prote 21.9 66 0.0014 20.3 1.6 39 44-82 15-58 (70)
307 COG0002 ArgC Acetylglutamate s 21.5 2.7E+02 0.0057 24.0 5.4 44 13-56 252-304 (349)
308 COG0150 PurM Phosphoribosylami 21.3 38 0.00083 28.7 0.5 49 121-169 274-322 (345)
309 PRK11901 hypothetical protein; 20.5 2.7E+02 0.0059 23.6 5.2 57 7-68 246-307 (327)
310 KOG1999 RNA polymerase II tran 20.5 2.9E+02 0.0063 27.2 5.9 31 41-71 206-236 (1024)
311 PF00313 CSD: 'Cold-shock' DNA 20.4 82 0.0018 19.2 1.8 12 44-55 11-22 (66)
312 PF02714 DUF221: Domain of unk 20.2 1E+02 0.0023 25.8 2.9 23 149-171 1-23 (325)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=2.7e-32 Score=227.50 Aligned_cols=153 Identities=25% Similarity=0.420 Sum_probs=136.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEc
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (272)
...++|||+|||+++|+++|+++|+.||+|++|+|.. ++.++|||||+|.++++|+.|+..||+..|.++.|+|.++
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a 184 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYA 184 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecc
Confidence 3578999999999999999999999999999999954 5678899999999999999999999999999999999998
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CCeEEEEeCCH
Q 024135 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNY 156 (272)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~----~~~~fv~f~~~ 156 (272)
..... ....++|||+|||..+++++|+++|.+||.|..+.++.+.. ++||||+|.+.
T Consensus 185 ~p~~~-------------------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~ 245 (346)
T TIGR01659 185 RPGGE-------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKR 245 (346)
T ss_pred ccccc-------------------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCH
Confidence 64221 12246899999999999999999999999999999987753 36999999999
Q ss_pred HHHHHHHHHhcCcccccce
Q 024135 157 DDMKHAIKKLDDSEFRNAF 175 (272)
Q Consensus 157 ~~a~~a~~~l~~~~~~g~~ 175 (272)
++|++|++.||+..+.+..
T Consensus 246 e~A~~Ai~~lng~~~~g~~ 264 (346)
T TIGR01659 246 EEAQEAISALNNVIPEGGS 264 (346)
T ss_pred HHHHHHHHHhCCCccCCCc
Confidence 9999999999999998743
No 2
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=1.3e-29 Score=183.98 Aligned_cols=185 Identities=63% Similarity=1.059 Sum_probs=158.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEc
Q 024135 1 MSSRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (272)
Q Consensus 1 ~~~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (272)
|+++.+++|||+|||.++-+.+|.+||-+||.|.+|.|+....+.+||||+|+++.+|+.||..-+|..+.|..|.|+|+
T Consensus 1 ~~gr~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 1 MSGRNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred CCCcccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 78999999999999999999999999999999999999887777889999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCC------CCCC-CCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCeEEEEe
Q 024135 81 HGGRGRSSSDRH------SSHS-SGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDY 153 (272)
Q Consensus 81 ~~~~~~~~~~~~------~~~~-~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f 153 (272)
............ .... .....++...+...+.|.+||+..+|++|++++.+.|.|.++.+.++. ++.|+|
T Consensus 81 rggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rDg---~GvV~~ 157 (241)
T KOG0105|consen 81 RGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRDG---VGVVEY 157 (241)
T ss_pred cCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeeccc---ceeeee
Confidence 877632221110 0011 112245667788999999999999999999999999999999999885 789999
Q ss_pred CCHHHHHHHHHHhcCcccccceeeeEEEeeccccC
Q 024135 154 TNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYDHR 188 (272)
Q Consensus 154 ~~~~~a~~a~~~l~~~~~~g~~~~~~~~~~~~~~~ 188 (272)
...++.+-|+.+|+...+...-.+..|.+......
T Consensus 158 ~r~eDMkYAvr~ld~~~~~seGe~~yirv~~~~~~ 192 (241)
T KOG0105|consen 158 LRKEDMKYAVRKLDDQKFRSEGETAYIRVRGDENR 192 (241)
T ss_pred eehhhHHHHHHhhccccccCcCcEeeEEecccCCC
Confidence 99999999999999998887666778888766544
No 3
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.97 E-value=1.4e-29 Score=221.94 Aligned_cols=169 Identities=22% Similarity=0.353 Sum_probs=140.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEcc
Q 024135 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (272)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (272)
..++|||+|||+.+++++|+++|..||+|..|.|.. +++++|||||+|.+.++|..|+..|||..|.|+.|.|.+..
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 468999999999999999999999999999999954 57899999999999999999999999999999999998654
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecC----CCCeEEEEeCCHH
Q 024135 82 GGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYD 157 (272)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~----~~~~~fv~f~~~~ 157 (272)
........ ............+|||+||+.++++++|+++|+.||.|..+.+..+. .+|||||+|.+.+
T Consensus 186 ~~p~a~~~--------~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e 257 (612)
T TIGR01645 186 NMPQAQPI--------IDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQ 257 (612)
T ss_pred cccccccc--------cccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHH
Confidence 32111000 00001112234689999999999999999999999999999999875 3579999999999
Q ss_pred HHHHHHHHhcCcccccceeeeEEEeecc
Q 024135 158 DMKHAIKKLDDSEFRNAFSRAYVRVREY 185 (272)
Q Consensus 158 ~a~~a~~~l~~~~~~g~~~~~~~~~~~~ 185 (272)
+|..|++.||+..++| ..|+|...
T Consensus 258 ~A~kAI~amNg~elgG----r~LrV~kA 281 (612)
T TIGR01645 258 SQSEAIASMNLFDLGG----QYLRVGKC 281 (612)
T ss_pred HHHHHHHHhCCCeeCC----eEEEEEec
Confidence 9999999999999999 45555543
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=1.5e-29 Score=215.46 Aligned_cols=160 Identities=23% Similarity=0.407 Sum_probs=140.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEcc
Q 024135 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (272)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (272)
+.++|||+|||+++++++|+++|+.||+|.+|+|.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 578999999999999999999999999999999954 47789999999999999999999999999999999999986
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecC----CCCeEEEEeCCHH
Q 024135 82 GGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYD 157 (272)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~----~~~~~fv~f~~~~ 157 (272)
+... .....+|||+|||..+++++|.++|.+||.|..+.+..+. ..+||||+|.+.+
T Consensus 82 ~~~~-------------------~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~ 142 (352)
T TIGR01661 82 PSSD-------------------SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRD 142 (352)
T ss_pred cccc-------------------ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHH
Confidence 4321 1124689999999999999999999999999999988764 4569999999999
Q ss_pred HHHHHHHHhcCcccccceeeeEEEeecc
Q 024135 158 DMKHAIKKLDDSEFRNAFSRAYVRVREY 185 (272)
Q Consensus 158 ~a~~a~~~l~~~~~~g~~~~~~~~~~~~ 185 (272)
+|+.|++.|||..+.|... .+.+...
T Consensus 143 ~A~~ai~~l~g~~~~g~~~--~i~v~~a 168 (352)
T TIGR01661 143 EADRAIKTLNGTTPSGCTE--PITVKFA 168 (352)
T ss_pred HHHHHHHHhCCCccCCCce--eEEEEEC
Confidence 9999999999999988543 4444443
No 5
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.97 E-value=1e-28 Score=217.20 Aligned_cols=166 Identities=21% Similarity=0.317 Sum_probs=139.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEc
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (272)
++.++|||+|||..+++++|+++|+.||.|.+|.|+. ++.++|||||+|.+.++|.+||. |+|..|.|+.|.|.++
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSS 165 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeec
Confidence 5678999999999999999999999999999999965 46789999999999999999998 9999999999999887
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----CeEEEEeCCH
Q 024135 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNY 156 (272)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~----~~~fv~f~~~ 156 (272)
............. .........+|||+|||..+++++|.++|..||.|..|.+..+..+ |||||+|.+.
T Consensus 166 ~~~~~~~~~~~~~-------~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~ 238 (457)
T TIGR01622 166 QAEKNRAAKAATH-------QPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDA 238 (457)
T ss_pred chhhhhhhhcccc-------cCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCH
Confidence 5432211110000 0001122679999999999999999999999999999999987644 6999999999
Q ss_pred HHHHHHHHHhcCcccccceee
Q 024135 157 DDMKHAIKKLDDSEFRNAFSR 177 (272)
Q Consensus 157 ~~a~~a~~~l~~~~~~g~~~~ 177 (272)
++|..|+..|||..+.|+.+.
T Consensus 239 e~A~~A~~~l~g~~i~g~~i~ 259 (457)
T TIGR01622 239 EEAKEALEVMNGFELAGRPIK 259 (457)
T ss_pred HHHHHHHHhcCCcEECCEEEE
Confidence 999999999999999994433
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.96 E-value=4.9e-28 Score=206.16 Aligned_cols=178 Identities=23% Similarity=0.332 Sum_probs=139.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCC--ceEEEEE
Q 024135 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG--HRLRVEL 79 (272)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g--~~i~v~~ 79 (272)
..++|||+|||+.+++++|.++|+.||.|..+.+.. ++.++|||||+|.+.++|+.|+..|||..+.| ..|.|.|
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~ 167 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKF 167 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 467899999999999999999999999999999854 35778999999999999999999999999887 5788888
Q ss_pred ccCCCCCCCCCC---------CCCCC-------------------------------------------------CCCC-
Q 024135 80 AHGGRGRSSSDR---------HSSHS-------------------------------------------------SGRG- 100 (272)
Q Consensus 80 ~~~~~~~~~~~~---------~~~~~-------------------------------------------------~~~~- 100 (272)
+........... +.... ...+
T Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (352)
T TIGR01661 168 ANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPP 247 (352)
T ss_pred CCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCc
Confidence 764431100000 00000 0000
Q ss_pred --------------CCCCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecC----CCCeEEEEeCCHHHHHHH
Q 024135 101 --------------RGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHA 162 (272)
Q Consensus 101 --------------~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~----~~~~~fv~f~~~~~a~~a 162 (272)
.......+.+|||+|||..+++++|.++|++||.|..+.+..+. .+|||||+|.+.++|..|
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~A 327 (352)
T TIGR01661 248 ATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMA 327 (352)
T ss_pred cccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHH
Confidence 00001223469999999999999999999999999999999876 467999999999999999
Q ss_pred HHHhcCcccccceeeeEEEeeccc
Q 024135 163 IKKLDDSEFRNAFSRAYVRVREYD 186 (272)
Q Consensus 163 ~~~l~~~~~~g~~~~~~~~~~~~~ 186 (272)
+..|||..++| ..|.|....
T Consensus 328 i~~lnG~~~~g----r~i~V~~~~ 347 (352)
T TIGR01661 328 ILSLNGYTLGN----RVLQVSFKT 347 (352)
T ss_pred HHHhCCCEECC----eEEEEEEcc
Confidence 99999999999 555555443
No 7
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=9e-29 Score=189.93 Aligned_cols=167 Identities=20% Similarity=0.342 Sum_probs=140.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEccCC
Q 024135 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (272)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~ 83 (272)
.-|||+.|.+.++.++|++.|.+||+|.+.+++. +++++||+||.|.+.++|+.||..|||.+|+++.|+-.|+.-+
T Consensus 63 fhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRK 142 (321)
T KOG0148|consen 63 FHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRK 142 (321)
T ss_pred eeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccC
Confidence 3489999999999999999999999999999965 5789999999999999999999999999999999999999644
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHHHH
Q 024135 84 RGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAI 163 (272)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~ 163 (272)
........ -.+ ..-.......+++||++|++..+++++|++.|+.||.|..|.+++++ ||+||.|++.|.|..|+
T Consensus 143 p~e~n~~~-ltf--deV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q--GYaFVrF~tkEaAahAI 217 (321)
T KOG0148|consen 143 PSEMNGKP-LTF--DEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ--GYAFVRFETKEAAAHAI 217 (321)
T ss_pred ccccCCCC-ccH--HHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc--ceEEEEecchhhHHHHH
Confidence 31111000 000 00012234568999999999999999999999999999999999985 49999999999999999
Q ss_pred HHhcCcccccceeee
Q 024135 164 KKLDDSEFRNAFSRA 178 (272)
Q Consensus 164 ~~l~~~~~~g~~~~~ 178 (272)
.++|+.++.|+.++.
T Consensus 218 v~mNntei~G~~VkC 232 (321)
T KOG0148|consen 218 VQMNNTEIGGQLVRC 232 (321)
T ss_pred HHhcCceeCceEEEE
Confidence 999999999965444
No 8
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.96 E-value=8.3e-28 Score=211.35 Aligned_cols=160 Identities=18% Similarity=0.240 Sum_probs=134.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhc--CCcccCCceEEEEEccC
Q 024135 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGR--DGYDFDGHRLRVELAHG 82 (272)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l--~g~~~~g~~i~v~~~~~ 82 (272)
|+++|||+|||+++++++|.++|+.||.|..|.+.. .++||||+|.+.++|+.|+..| ++..|.|+.|.|.|+..
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~---~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~ 77 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP---GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTS 77 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC---CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCC
Confidence 689999999999999999999999999999999874 4689999999999999999864 78999999999999975
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHHH
Q 024135 83 GRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHA 162 (272)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a 162 (272)
........ .. ...........|+|+||+..+++++|.++|+.||.|..|.++.+...++|||+|.+.++|..|
T Consensus 78 ~~~~~~~~------~~-~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A 150 (481)
T TIGR01649 78 QEIKRDGN------SD-FDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHA 150 (481)
T ss_pred cccccCCC------Cc-ccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCCceEEEEEECCHHHHHHH
Confidence 43211110 00 000111234579999999999999999999999999999998887767999999999999999
Q ss_pred HHHhcCcccccc
Q 024135 163 IKKLDDSEFRNA 174 (272)
Q Consensus 163 ~~~l~~~~~~g~ 174 (272)
++.|||..+.|.
T Consensus 151 ~~~Lng~~i~~~ 162 (481)
T TIGR01649 151 KAALNGADIYNG 162 (481)
T ss_pred HHHhcCCcccCC
Confidence 999999999764
No 9
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.96 E-value=1.3e-27 Score=214.99 Aligned_cols=151 Identities=26% Similarity=0.424 Sum_probs=134.0
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEccCCC
Q 024135 8 TLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGR 84 (272)
Q Consensus 8 ~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~~ 84 (272)
+|||+|||+++|+++|.++|+.||+|.+|.|.. +++++|||||+|.+.++|++|+..||+..|.|+.|.|.|+....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 799999999999999999999999999999954 46788999999999999999999999999999999999975322
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecC---CCCeEEEEeCCHHHHHH
Q 024135 85 GRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG---SGTTGIVDYTNYDDMKH 161 (272)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~---~~~~~fv~f~~~~~a~~ 161 (272)
.. ......+|||+||+.++++++|.++|+.||.|..|.+..+. .+|||||+|.+.++|..
T Consensus 82 ~~-----------------~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~ 144 (562)
T TIGR01628 82 SL-----------------RRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKA 144 (562)
T ss_pred cc-----------------cccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHH
Confidence 11 11123579999999999999999999999999999998875 34799999999999999
Q ss_pred HHHHhcCcccccce
Q 024135 162 AIKKLDDSEFRNAF 175 (272)
Q Consensus 162 a~~~l~~~~~~g~~ 175 (272)
|++++||..+.|+.
T Consensus 145 Ai~~lng~~~~~~~ 158 (562)
T TIGR01628 145 AIQKVNGMLLNDKE 158 (562)
T ss_pred HHHHhcccEecCce
Confidence 99999999999943
No 10
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.96 E-value=4.1e-27 Score=206.94 Aligned_cols=170 Identities=19% Similarity=0.286 Sum_probs=136.6
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEccC
Q 024135 4 RASRTLYVGNLPG-DIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (272)
Q Consensus 4 ~~~~~l~v~nL~~-~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~ 82 (272)
.++++|||+||++ .+|+++|.++|+.||.|..|++..+ .+|||||+|.+.++|..|+..|||..|.|+.|.|.+++.
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~--~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~ 350 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN--KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQ 350 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccc
Confidence 4678999999998 6999999999999999999999765 368999999999999999999999999999999999876
Q ss_pred CCCCCCCCCC--------CCCCCCC----------CCCCCCCccceEEEcCCCCCCCHHHHHHHHHhcCC--eeEEEEEe
Q 024135 83 GRGRSSSDRH--------SSHSSGR----------GRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGD--VCFSQVFR 142 (272)
Q Consensus 83 ~~~~~~~~~~--------~~~~~~~----------~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~--i~~~~~~~ 142 (272)
.......... ..+.... .......+..+|||+|||..+++++|+++|..||. +..+.++.
T Consensus 351 ~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~ 430 (481)
T TIGR01649 351 QNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFP 430 (481)
T ss_pred ccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEec
Confidence 5322111100 0000000 00011235679999999999999999999999998 77787765
Q ss_pred cC--CCCeEEEEeCCHHHHHHHHHHhcCcccccce
Q 024135 143 DG--SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (272)
Q Consensus 143 ~~--~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~ 175 (272)
.. ..++|||+|.+.++|..|+..||+..+.++.
T Consensus 431 ~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~ 465 (481)
T TIGR01649 431 KDNERSKMGLLEWESVEDAVEALIALNHHQLNEPN 465 (481)
T ss_pred CCCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCC
Confidence 43 2469999999999999999999999999864
No 11
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.96 E-value=7.2e-27 Score=204.62 Aligned_cols=174 Identities=22% Similarity=0.328 Sum_probs=133.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec--CCCCCceEEEEecChHHHHHHHHhcCCcccC-CceEEEEEccC
Q 024135 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFD-GHRLRVELAHG 82 (272)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~-g~~i~v~~~~~ 82 (272)
.++|||+|||+++++++|.++|++||.|.+++|+. ++.++|||||+|.+.++|++||..||+..|. |+.|.|.++..
T Consensus 58 ~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~~ 137 (578)
T TIGR01648 58 GCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISVD 137 (578)
T ss_pred CCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccccc
Confidence 48999999999999999999999999999999865 4788999999999999999999999998885 67666654431
Q ss_pred CCCC--------------------------------C--CCCCCCC------------------CCC-----CC------
Q 024135 83 GRGR--------------------------------S--SSDRHSS------------------HSS-----GR------ 99 (272)
Q Consensus 83 ~~~~--------------------------------~--~~~~~~~------------------~~~-----~~------ 99 (272)
.... . ....... ... .+
T Consensus 138 ~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~Vd 217 (578)
T TIGR01648 138 NCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVD 217 (578)
T ss_pred CceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEE
Confidence 1000 0 0000000 000 00
Q ss_pred ----C---CCCCCCccceEEEcCCCCCCCHHHHHHHHHhc--CCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCcc
Q 024135 100 ----G---RGVSRRSEYRVLVTGLPSSASWQDLKDHMRRA--GDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSE 170 (272)
Q Consensus 100 ----~---~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~--G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~ 170 (272)
. .........+|||+||+..+++++|+++|.+| |.|..|.+..+ ||||+|++.++|++|++.||+.+
T Consensus 218 wA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~rg----fAFVeF~s~e~A~kAi~~lnG~~ 293 (578)
T TIGR01648 218 WAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIRD----YAFVHFEDREDAVKAMDELNGKE 293 (578)
T ss_pred eecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeecC----eEEEEeCCHHHHHHHHHHhCCCE
Confidence 0 00111234689999999999999999999999 99999988765 99999999999999999999999
Q ss_pred cccceeeeEEEeecccc
Q 024135 171 FRNAFSRAYVRVREYDH 187 (272)
Q Consensus 171 ~~g~~~~~~~~~~~~~~ 187 (272)
|.| ..|.|.+..+
T Consensus 294 i~G----r~I~V~~Akp 306 (578)
T TIGR01648 294 LEG----SEIEVTLAKP 306 (578)
T ss_pred ECC----EEEEEEEccC
Confidence 999 4555554433
No 12
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.95 E-value=1.1e-26 Score=207.04 Aligned_cols=170 Identities=19% Similarity=0.300 Sum_probs=131.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcc------------CCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCccc
Q 024135 3 SRASRTLYVGNLPGDIREREVEDLFYKY------------GPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDF 70 (272)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~------------G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~ 70 (272)
++..++|||||||+.+|+++|.++|..+ +.|..+.+ ...+|||||+|.+.++|..||. |||..|
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~---~~~kg~afVeF~~~e~A~~Al~-l~g~~~ 247 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI---NKEKNFAFLEFRTVEEATFAMA-LDSIIY 247 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE---CCCCCEEEEEeCCHHHHhhhhc-CCCeEe
Confidence 4567899999999999999999999975 23444444 3557999999999999999996 999999
Q ss_pred CCceEEEEEccCCCCCCCCCCC------CCCCCC----CCCCCCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEE
Q 024135 71 DGHRLRVELAHGGRGRSSSDRH------SSHSSG----RGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQV 140 (272)
Q Consensus 71 ~g~~i~v~~~~~~~~~~~~~~~------~~~~~~----~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~ 140 (272)
.|..|.|............... ...... ...........+|||+|||..+++++|.++|+.||.|..+.+
T Consensus 248 ~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~ 327 (509)
T TIGR01642 248 SNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNL 327 (509)
T ss_pred eCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE
Confidence 9999999765433211100000 000000 001112234579999999999999999999999999999999
Q ss_pred EecC----CCCeEEEEeCCHHHHHHHHHHhcCccccccee
Q 024135 141 FRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (272)
Q Consensus 141 ~~~~----~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~ 176 (272)
+.+. ..|||||+|.+.++|..|++.|+|..+.|..+
T Consensus 328 ~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l 367 (509)
T TIGR01642 328 IKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKL 367 (509)
T ss_pred EecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 8774 45799999999999999999999999999543
No 13
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=3.8e-27 Score=192.58 Aligned_cols=172 Identities=23% Similarity=0.321 Sum_probs=138.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccC-CceEEEEEccC
Q 024135 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFD-GHRLRVELAHG 82 (272)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~-g~~i~v~~~~~ 82 (272)
|-||||.||.++.+++|.-||++.|+|-+++|+. +|.++|||||.|.+.+.|++|+..||+..|. |+.|.|..+..
T Consensus 84 ~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Sva 163 (506)
T KOG0117|consen 84 CEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVA 163 (506)
T ss_pred ceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeee
Confidence 6799999999999999999999999999999954 5899999999999999999999999999985 88888887662
Q ss_pred CC-------CCCC-----------------------CCCCCCCCC-----------------------------------
Q 024135 83 GR-------GRSS-----------------------SDRHSSHSS----------------------------------- 97 (272)
Q Consensus 83 ~~-------~~~~-----------------------~~~~~~~~~----------------------------------- 97 (272)
.. +... .......+.
T Consensus 164 n~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVd 243 (506)
T KOG0117|consen 164 NCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVD 243 (506)
T ss_pred cceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceee
Confidence 11 0000 000000000
Q ss_pred CC-----CCCCCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCcccc
Q 024135 98 GR-----GRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR 172 (272)
Q Consensus 98 ~~-----~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~ 172 (272)
+. ........-..|||.||+.++|++.|+++|++||.|..|...+| ||||.|.+.++|.+||+.+|+++|+
T Consensus 244 WAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD----YaFVHf~eR~davkAm~~~ngkeld 319 (506)
T KOG0117|consen 244 WAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD----YAFVHFAEREDAVKAMKETNGKELD 319 (506)
T ss_pred ccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc----eeEEeecchHHHHHHHHHhcCceec
Confidence 00 01112234568999999999999999999999999999999988 9999999999999999999999999
Q ss_pred cceeeeEEEe
Q 024135 173 NAFSRAYVRV 182 (272)
Q Consensus 173 g~~~~~~~~~ 182 (272)
|..+.+.+..
T Consensus 320 G~~iEvtLAK 329 (506)
T KOG0117|consen 320 GSPIEVTLAK 329 (506)
T ss_pred CceEEEEecC
Confidence 9766554443
No 14
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.95 E-value=1.2e-27 Score=185.50 Aligned_cols=147 Identities=28% Similarity=0.523 Sum_probs=136.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEccCCCCC
Q 024135 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRGR 86 (272)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~~~~ 86 (272)
-.|||||||..+++.+|+.+|++||+|.++.|+ +.||||..++...|..|+..|+|..|+|..|+|+.++++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv-----KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKsk- 76 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIV-----KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKSK- 76 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeee-----cccceEEeecccccHHHHhhcccceecceEEEEEeccccCC-
Confidence 369999999999999999999999999999998 67999999999999999999999999999999999986532
Q ss_pred CCCCCCCCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHh
Q 024135 87 SSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKL 166 (272)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l 166 (272)
..++|+|+|+.+.++.++|+..|.+||.|+.|+++++ |+||.|.-.++|.+|+..|
T Consensus 77 --------------------~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd----y~fvh~d~~eda~~air~l 132 (346)
T KOG0109|consen 77 --------------------ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD----YAFVHFDRAEDAVEAIRGL 132 (346)
T ss_pred --------------------CccccccCCCCccccCHHHhhhhcccCCceeeeeecc----eeEEEEeeccchHHHHhcc
Confidence 3479999999999999999999999999999999999 9999999999999999999
Q ss_pred cCcccccceeeeEEEee
Q 024135 167 DDSEFRNAFSRAYVRVR 183 (272)
Q Consensus 167 ~~~~~~g~~~~~~~~~~ 183 (272)
|+.++.|+..++.++..
T Consensus 133 ~~~~~~gk~m~vq~sts 149 (346)
T KOG0109|consen 133 DNTEFQGKRMHVQLSTS 149 (346)
T ss_pred cccccccceeeeeeecc
Confidence 99999998777666554
No 15
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.95 E-value=7.2e-26 Score=201.84 Aligned_cols=172 Identities=19% Similarity=0.346 Sum_probs=135.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEcc
Q 024135 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (272)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (272)
+.++|||+|||..+|+++|.++|+.||.|..+.|.. ++.++|||||+|.+.++|..|+..|||..|.|+.|.|.++.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 457999999999999999999999999999999854 57789999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCC-----CCC----CCCCCCCCccceEEEcCCCCCC----------CHHHHHHHHHhcCCeeEEEEEe
Q 024135 82 GGRGRSSSDRHSSH-----SSG----RGRGVSRRSEYRVLVTGLPSSA----------SWQDLKDHMRRAGDVCFSQVFR 142 (272)
Q Consensus 82 ~~~~~~~~~~~~~~-----~~~----~~~~~~~~~~~~~~v~nl~~~~----------~~~~l~~~f~~~G~i~~~~~~~ 142 (272)
.............. ... ........+..+|+|.|+.... ..++|+++|.+||.|..|.|+.
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~ 453 (509)
T TIGR01642 374 VGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPR 453 (509)
T ss_pred cCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeec
Confidence 54433221111100 000 0011122356788999985321 2368999999999999999986
Q ss_pred cC-------CCCeEEEEeCCHHHHHHHHHHhcCccccccee
Q 024135 143 DG-------SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (272)
Q Consensus 143 ~~-------~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~ 176 (272)
.. ..|+|||+|.+.++|+.|+..|||..|+|+.+
T Consensus 454 ~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v 494 (509)
T TIGR01642 454 PNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVV 494 (509)
T ss_pred cCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 52 23689999999999999999999999999544
No 16
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.94 E-value=5.9e-26 Score=204.25 Aligned_cols=175 Identities=22% Similarity=0.348 Sum_probs=141.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec--CCCCCceEEEEecChHHHHHHHHhcCCcccC----CceEEEE
Q 024135 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFD----GHRLRVE 78 (272)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~----g~~i~v~ 78 (272)
..++|||+|||.++|+++|+++|+.||+|..+.+.. ++.++|||||+|.+.++|.+|+..|||..|. |..|.|.
T Consensus 177 ~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~ 256 (562)
T TIGR01628 177 KFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVG 256 (562)
T ss_pred CCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEee
Confidence 457899999999999999999999999999999954 4677899999999999999999999999999 9999998
Q ss_pred EccCCCCCCCCCCCCCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecC---CCCeEEEEeCC
Q 024135 79 LAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG---SGTTGIVDYTN 155 (272)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~---~~~~~fv~f~~ 155 (272)
++......... ...................+|||+||+..+++++|+++|+.||.|..+.++.+. .+|||||+|.+
T Consensus 257 ~a~~k~er~~~-~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~ 335 (562)
T TIGR01628 257 RAQKRAEREAE-LRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSN 335 (562)
T ss_pred cccChhhhHHH-HHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCC
Confidence 87644322100 000000000111223346789999999999999999999999999999999874 34799999999
Q ss_pred HHHHHHHHHHhcCcccccceeeeEE
Q 024135 156 YDDMKHAIKKLDDSEFRNAFSRAYV 180 (272)
Q Consensus 156 ~~~a~~a~~~l~~~~~~g~~~~~~~ 180 (272)
.++|.+|+..||+..++|+.+.+.+
T Consensus 336 ~~~A~~A~~~~~g~~~~gk~l~V~~ 360 (562)
T TIGR01628 336 PEEANRAVTEMHGRMLGGKPLYVAL 360 (562)
T ss_pred HHHHHHHHHHhcCCeeCCceeEEEe
Confidence 9999999999999999996554433
No 17
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=5.4e-26 Score=173.83 Aligned_cols=160 Identities=23% Similarity=0.386 Sum_probs=140.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEc
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (272)
...+.|.|.-||.++|+++|+.||..+|+|+++++.. +|++.||+||.|-+++||++|+..|||..+..+.|+|.|+
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyA 118 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYA 118 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEec
Confidence 3456789999999999999999999999999999954 5899999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CCeEEEEeCCH
Q 024135 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNY 156 (272)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~----~~~~fv~f~~~ 156 (272)
.+.. ....+..|||.+||..+|+.+|+++|++||.|..-.+..|.. +|.|||.|...
T Consensus 119 RPSs-------------------~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr 179 (360)
T KOG0145|consen 119 RPSS-------------------DSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKR 179 (360)
T ss_pred cCCh-------------------hhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecch
Confidence 7533 223457999999999999999999999999998877776654 45899999999
Q ss_pred HHHHHHHHHhcCcccccceeeeEEEeec
Q 024135 157 DDMKHAIKKLDDSEFRNAFSRAYVRVRE 184 (272)
Q Consensus 157 ~~a~~a~~~l~~~~~~g~~~~~~~~~~~ 184 (272)
.+|++|+..|||..-.|+. ..|.|..
T Consensus 180 ~EAe~AIk~lNG~~P~g~t--epItVKF 205 (360)
T KOG0145|consen 180 IEAEEAIKGLNGQKPSGCT--EPITVKF 205 (360)
T ss_pred hHHHHHHHhccCCCCCCCC--CCeEEEe
Confidence 9999999999999988854 3455553
No 18
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.94 E-value=1.9e-25 Score=162.14 Aligned_cols=166 Identities=22% Similarity=0.350 Sum_probs=140.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecC---CCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEc
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~---~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (272)
....|||||||+..++++.|.++|-+.|+|..++++.+ ...+|||||+|.++|+|+-|+..||...|.|++|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 45689999999999999999999999999999999653 567899999999999999999999999999999999887
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeE-EEEEecCC----CCeEEEEeCC
Q 024135 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCF-SQVFRDGS----GTTGIVDYTN 155 (272)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~-~~~~~~~~----~~~~fv~f~~ 155 (272)
.... .....+..+||+||.+.+++..|.++|+.||.+.. -.++.++. ++||||.|.+
T Consensus 87 s~~~------------------~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~s 148 (203)
T KOG0131|consen 87 SAHQ------------------KNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYAS 148 (203)
T ss_pred cccc------------------ccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechh
Confidence 5211 22233478999999999999999999999998775 35555543 4599999999
Q ss_pred HHHHHHHHHHhcCcccccceeeeEEEeecccc
Q 024135 156 YDDMKHAIKKLDDSEFRNAFSRAYVRVREYDH 187 (272)
Q Consensus 156 ~~~a~~a~~~l~~~~~~g~~~~~~~~~~~~~~ 187 (272)
.+.+..|+..+||..+.++.+++.+...+...
T Consensus 149 feasd~ai~s~ngq~l~nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 149 FEASDAAIGSMNGQYLCNRPITVSYAFKKDTK 180 (203)
T ss_pred HHHHHHHHHHhccchhcCCceEEEEEEecCCC
Confidence 99999999999999999966666555554433
No 19
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.93 E-value=1.7e-24 Score=190.46 Aligned_cols=174 Identities=21% Similarity=0.359 Sum_probs=135.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecC---CCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEccC
Q 024135 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (272)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~---~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~ 82 (272)
+++|||+|||..+|+++|+++|+.||.|..|.|..+ +.++|||||+|.+.++|..|+..|||..|.|+.|.|.|+..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 589999999999999999999999999999999643 57789999999999999999999999999999999999653
Q ss_pred CCCCCCCC-------------C-------------------------CCCCC---------CC---C-------------
Q 024135 83 GRGRSSSD-------------R-------------------------HSSHS---------SG---R------------- 99 (272)
Q Consensus 83 ~~~~~~~~-------------~-------------------------~~~~~---------~~---~------------- 99 (272)
........ . +.... .. .
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (457)
T TIGR01622 266 STYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALA 345 (457)
T ss_pred CCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccc
Confidence 21110000 0 00000 00 0
Q ss_pred --------CCCCCCCccceEEEcCCCCCCC----------HHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHH
Q 024135 100 --------GRGVSRRSEYRVLVTGLPSSAS----------WQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKH 161 (272)
Q Consensus 100 --------~~~~~~~~~~~~~v~nl~~~~~----------~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~ 161 (272)
.......+..+|+|.||....+ .++|++.|.+||.|..+.+......|++||+|.+.++|..
T Consensus 346 ~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~~~G~~fV~F~~~e~A~~ 425 (457)
T TIGR01622 346 IMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTKNSAGKIYLKFSSVDAALA 425 (457)
T ss_pred cccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCCCCceeEEEEECCHHHHHH
Confidence 0000113456788888854443 3789999999999999999877778899999999999999
Q ss_pred HHHHhcCcccccceeeeE
Q 024135 162 AIKKLDDSEFRNAFSRAY 179 (272)
Q Consensus 162 a~~~l~~~~~~g~~~~~~ 179 (272)
|++.|||..++|+.+.+.
T Consensus 426 A~~~lnGr~f~gr~i~~~ 443 (457)
T TIGR01622 426 AFQALNGRYFGGKMITAA 443 (457)
T ss_pred HHHHhcCcccCCeEEEEE
Confidence 999999999999665543
No 20
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=1.3e-25 Score=182.84 Aligned_cols=168 Identities=24% Similarity=0.436 Sum_probs=141.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcc-cCC--ceEEEE
Q 024135 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYD-FDG--HRLRVE 78 (272)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~-~~g--~~i~v~ 78 (272)
+.-.||||.||..++|.||+++|++||.|.+|.|.+ ++.++|||||.|.+.++|.+|+..|++.. |.| .+|.|.
T Consensus 33 ~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk 112 (510)
T KOG0144|consen 33 SAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVK 112 (510)
T ss_pred hhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeec
Confidence 455799999999999999999999999999999965 47889999999999999999999999844 544 578888
Q ss_pred EccCCCCCCCCCCCCCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecC---CCCeEEEEeCC
Q 024135 79 LAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG---SGTTGIVDYTN 155 (272)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~---~~~~~fv~f~~ 155 (272)
++......- ..+.+|||+-|+..+++.+++++|.+||.|++|.|..+. .+|||||.|.+
T Consensus 113 ~Ad~E~er~------------------~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fst 174 (510)
T KOG0144|consen 113 YADGERERI------------------VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFST 174 (510)
T ss_pred ccchhhhcc------------------ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEeh
Confidence 886544221 235789999999999999999999999999999999986 45799999999
Q ss_pred HHHHHHHHHHhcCcc-cccceeeeEEEeeccccCCCCC
Q 024135 156 YDDMKHAIKKLDDSE-FRNAFSRAYVRVREYDHRRDGS 192 (272)
Q Consensus 156 ~~~a~~a~~~l~~~~-~~g~~~~~~~~~~~~~~~r~~~ 192 (272)
.+.|..|++.||+.. +.|+ ...+.|++.+..+.+.
T Consensus 175 ke~A~~Aika~ng~~tmeGc--s~PLVVkFADtqkdk~ 210 (510)
T KOG0144|consen 175 KEMAVAAIKALNGTQTMEGC--SQPLVVKFADTQKDKD 210 (510)
T ss_pred HHHHHHHHHhhccceeeccC--CCceEEEecccCCCch
Confidence 999999999999964 5563 4677777776655443
No 21
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=9.5e-25 Score=182.64 Aligned_cols=175 Identities=21% Similarity=0.342 Sum_probs=142.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecC---CCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEccCC
Q 024135 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (272)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~---~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~ 83 (272)
.||||++||+.++.++|.++|+.+|+|..+.+... +..+|||||.|.-++|++.|+..+++..|.|+.|.|.+++..
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 89999999999999999999999999999999653 467899999999999999999999999999999999999855
Q ss_pred CCCCCCCCCCCCC---CCCC----CCCCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC---CeEEEEe
Q 024135 84 RGRSSSDRHSSHS---SGRG----RGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG---TTGIVDY 153 (272)
Q Consensus 84 ~~~~~~~~~~~~~---~~~~----~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~---~~~fv~f 153 (272)
............. ...+ ......+.+.|+|.|||+.+...+|+.+|+.||.|..|.|.....+ |||||+|
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~f 165 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQF 165 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEE
Confidence 4332111000000 0001 0111234789999999999999999999999999999999977554 5999999
Q ss_pred CCHHHHHHHHHHhcCcccccceeeeEEEeecc
Q 024135 154 TNYDDMKHAIKKLDDSEFRNAFSRAYVRVREY 185 (272)
Q Consensus 154 ~~~~~a~~a~~~l~~~~~~g~~~~~~~~~~~~ 185 (272)
....+|..|++.+|+.+|+| +.|.|+|.
T Consensus 166 k~~~dA~~Al~~~N~~~i~g----R~VAVDWA 193 (678)
T KOG0127|consen 166 KEKKDAEKALEFFNGNKIDG----RPVAVDWA 193 (678)
T ss_pred eeHHHHHHHHHhccCceecC----ceeEEeee
Confidence 99999999999999999999 55555543
No 22
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=7.7e-24 Score=177.23 Aligned_cols=175 Identities=21% Similarity=0.366 Sum_probs=135.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEee--cCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEccCC
Q 024135 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLK--IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (272)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~--~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~ 83 (272)
.-.|.|.|||+.+...+|..+|+.||.|..|.|+ .++...|||||+|.+..+|..|+..|||..|.|++|-|+||...
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~K 196 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDK 196 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccc
Confidence 4579999999999999999999999999999995 46788899999999999999999999999999999999998843
Q ss_pred CCCCCC------------------C-C------------------CCCCCC---------C--------CCC--------
Q 024135 84 RGRSSS------------------D-R------------------HSSHSS---------G--------RGR-------- 101 (272)
Q Consensus 84 ~~~~~~------------------~-~------------------~~~~~~---------~--------~~~-------- 101 (272)
...... . . ...... . ...
T Consensus 197 d~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~ 276 (678)
T KOG0127|consen 197 DTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKES 276 (678)
T ss_pred ccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCcc
Confidence 211100 0 0 000000 0 000
Q ss_pred ---------CCCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----CeEEEEeCCHHHHHHHHHHh--
Q 024135 102 ---------GVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKL-- 166 (272)
Q Consensus 102 ---------~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l-- 166 (272)
.....-+.+|||.|||+++++++|.++|++||+|.++.++.++.+ |.|||.|.+..+|..||...
T Consensus 277 ~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Asp 356 (678)
T KOG0127|consen 277 DKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASP 356 (678)
T ss_pred cchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCc
Confidence 001112478999999999999999999999999999999988654 59999999999999999976
Q ss_pred ---cC-cccccceeeeEE
Q 024135 167 ---DD-SEFRNAFSRAYV 180 (272)
Q Consensus 167 ---~~-~~~~g~~~~~~~ 180 (272)
.| ..+.|+...+..
T Consensus 357 a~e~g~~ll~GR~Lkv~~ 374 (678)
T KOG0127|consen 357 ASEDGSVLLDGRLLKVTL 374 (678)
T ss_pred cCCCceEEEeccEEeeee
Confidence 23 456665444433
No 23
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=3.4e-23 Score=158.57 Aligned_cols=171 Identities=23% Similarity=0.348 Sum_probs=138.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEee---cCCCCCceEEEEecChHHHHHHHHhcCCcccCC--ceEEEEEc
Q 024135 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLK---IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG--HRLRVELA 80 (272)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~---~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g--~~i~v~~~ 80 (272)
...|||.+||+.+|..+|.++|++||.|..-+|. .++.++|.+||.|....+|+.|+..|||..-.| .+|.|.|+
T Consensus 127 ~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFa 206 (360)
T KOG0145|consen 127 DANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFA 206 (360)
T ss_pred ccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEec
Confidence 3579999999999999999999999998877773 358899999999999999999999999987765 48999999
Q ss_pred cCCCCCCCCCC-------C-CCCCC--------------------------C----------CCCCCCCCccceEEEcCC
Q 024135 81 HGGRGRSSSDR-------H-SSHSS--------------------------G----------RGRGVSRRSEYRVLVTGL 116 (272)
Q Consensus 81 ~~~~~~~~~~~-------~-~~~~~--------------------------~----------~~~~~~~~~~~~~~v~nl 116 (272)
.++........ + ..+.+ . ...+......|+|||-||
T Consensus 207 nnPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNL 286 (360)
T KOG0145|consen 207 NNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNL 286 (360)
T ss_pred CCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEec
Confidence 86643221000 0 00000 0 011122235899999999
Q ss_pred CCCCCHHHHHHHHHhcCCeeEEEEEecCC----CCeEEEEeCCHHHHHHHHHHhcCccccccee
Q 024135 117 PSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (272)
Q Consensus 117 ~~~~~~~~l~~~f~~~G~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~ 176 (272)
.+++.+..|+++|.+||.|..+++++|.. +|||||.+.+.++|..|+..|||..++++..
T Consensus 287 spd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvL 350 (360)
T KOG0145|consen 287 SPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVL 350 (360)
T ss_pred CCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEE
Confidence 99999999999999999999999998854 5799999999999999999999999999544
No 24
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=7.6e-24 Score=161.58 Aligned_cols=163 Identities=39% Similarity=0.663 Sum_probs=133.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEccCCCCC
Q 024135 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRGR 86 (272)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~~~~ 86 (272)
..||||+||+.+.+.+|..||..||.|.++.|+ .||+||+|.+..+|..|+..||+..|.|..+.|+|+......
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-----~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~ 76 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK-----NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRG 76 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee-----cccceeccCchhhhhcccchhcCceecceeeeeecccccccc
Confidence 368999999999999999999999999999987 689999999999999999999999999999999999854322
Q ss_pred CCCCCCCCCCC-CCCCCCCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHH
Q 024135 87 SSSDRHSSHSS-GRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKK 165 (272)
Q Consensus 87 ~~~~~~~~~~~-~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~ 165 (272)
..........+ ......+......+.|.+++..+.+++|.++|.++|.+....... +++||+|...++|..|+..
T Consensus 77 ~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~~----~~~~v~Fs~~~da~ra~~~ 152 (216)
T KOG0106|consen 77 RGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDARR----NFAFVEFSEQEDAKRALEK 152 (216)
T ss_pred cCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhhhc----cccceeehhhhhhhhcchh
Confidence 21111111111 122334566788999999999999999999999999996655533 3899999999999999999
Q ss_pred hcCcccccceeee
Q 024135 166 LDDSEFRNAFSRA 178 (272)
Q Consensus 166 l~~~~~~g~~~~~ 178 (272)
|++..+.++.++.
T Consensus 153 l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 153 LDGKKLNGRRISV 165 (216)
T ss_pred ccchhhcCceeee
Confidence 9999999965544
No 25
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=1.2e-23 Score=168.24 Aligned_cols=161 Identities=22% Similarity=0.369 Sum_probs=135.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEccCC
Q 024135 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (272)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~ 83 (272)
|.||||.|...+.++.|+..|..||+|++|.|.+ +++.+|||||+|+-+|.|+.|++.|||.+++|+.|+|....+-
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNm 193 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNM 193 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCC
Confidence 6799999999999999999999999999999966 4789999999999999999999999999999999999743221
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----CeEEEEeCCHHHH
Q 024135 84 RGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDM 159 (272)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~----~~~fv~f~~~~~a 159 (272)
....+ -...-......-..|||..+.+++++++|+..|..||+|..|.+..++.+ ||||++|.+....
T Consensus 194 pQAQp--------iID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~ 265 (544)
T KOG0124|consen 194 PQAQP--------IIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQ 265 (544)
T ss_pred cccch--------HHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccch
Confidence 10000 00000111234578999999999999999999999999999999998754 5999999999999
Q ss_pred HHHHHHhcCcccccce
Q 024135 160 KHAIKKLDDSEFRNAF 175 (272)
Q Consensus 160 ~~a~~~l~~~~~~g~~ 175 (272)
.+|+..||-..++|..
T Consensus 266 ~eAiasMNlFDLGGQy 281 (544)
T KOG0124|consen 266 SEAIASMNLFDLGGQY 281 (544)
T ss_pred HHHhhhcchhhcccce
Confidence 9999999999999943
No 26
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=1.1e-21 Score=141.82 Aligned_cols=79 Identities=49% Similarity=0.826 Sum_probs=72.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEccCCC
Q 024135 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGR 84 (272)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~~ 84 (272)
-.+.||||||+.++++.||..+|..||+|..|.|.. .+.|||||||+++.||+.|+..|+|..|.|..|.|+++.+..
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvAr--nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~ 86 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVAR--NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRP 86 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEee--cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCc
Confidence 478999999999999999999999999999999865 457999999999999999999999999999999999997654
Q ss_pred C
Q 024135 85 G 85 (272)
Q Consensus 85 ~ 85 (272)
.
T Consensus 87 r 87 (195)
T KOG0107|consen 87 R 87 (195)
T ss_pred c
Confidence 3
No 27
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=7.4e-22 Score=165.86 Aligned_cols=141 Identities=26% Similarity=0.387 Sum_probs=128.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEccCCCCC
Q 024135 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRGR 86 (272)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~~~~ 86 (272)
..|||| +++|+.+|.++|+.+|+|.++++..+..+.|||||.|.++++|..||..||...+.|++|.+-|+....
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~-- 76 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP-- 76 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC--
Confidence 479999 999999999999999999999994332289999999999999999999999999999999999986422
Q ss_pred CCCCCCCCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC--CeEEEEeCCHHHHHHHHH
Q 024135 87 SSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG--TTGIVDYTNYDDMKHAIK 164 (272)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~--~~~fv~f~~~~~a~~a~~ 164 (272)
..+||.||++.++...|.++|+.||.|..|.+..+..+ || ||+|++.++|..|++
T Consensus 77 ----------------------~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~ 133 (369)
T KOG0123|consen 77 ----------------------SLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIE 133 (369)
T ss_pred ----------------------ceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHH
Confidence 22999999999999999999999999999999988754 58 999999999999999
Q ss_pred HhcCcccccce
Q 024135 165 KLDDSEFRNAF 175 (272)
Q Consensus 165 ~l~~~~~~g~~ 175 (272)
.+||..+.|+.
T Consensus 134 ~~ng~ll~~kk 144 (369)
T KOG0123|consen 134 KLNGMLLNGKK 144 (369)
T ss_pred HhcCcccCCCe
Confidence 99999999954
No 28
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=8.3e-22 Score=142.41 Aligned_cols=78 Identities=19% Similarity=0.237 Sum_probs=69.8
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCcccccceeeeEEEeeccc
Q 024135 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYD 186 (272)
Q Consensus 108 ~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~~~~~ 186 (272)
+++|||+||+..+++.||+.+|..||.|..|+|..+ +.|||||+|+++.+|++|+..|+|..|.|..+++++.....+
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~r 87 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRPR 87 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCcc
Confidence 689999999999999999999999999999999995 456999999999999999999999999996666666655443
No 29
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.86 E-value=1.8e-20 Score=141.70 Aligned_cols=171 Identities=22% Similarity=0.338 Sum_probs=139.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHH----HhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEE
Q 024135 1 MSSRASRTLYVGNLPGDIREREVED----LFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLR 76 (272)
Q Consensus 1 ~~~~~~~~l~v~nL~~~~t~~~l~~----~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~ 76 (272)
|+..++.||||.||+..+..++|+. +|++||.|.+|....+.+.+|.|||.|.+.+.|-.|+..|+|..|.|+++.
T Consensus 4 ~~~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 4 MSVNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred cccCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 3456777999999999999999888 999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCCCCCC--------------C------CCCCCCC------CCCC-----CCCCCccceEEEcCCCCCCCHHHH
Q 024135 77 VELAHGGRGRSSS--------------D------RHSSHSS------GRGR-----GVSRRSEYRVLVTGLPSSASWQDL 125 (272)
Q Consensus 77 v~~~~~~~~~~~~--------------~------~~~~~~~------~~~~-----~~~~~~~~~~~v~nl~~~~~~~~l 125 (272)
++||+.....-.. . .+....+ .... .....++..+++.|||..++.+.|
T Consensus 84 iqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l 163 (221)
T KOG4206|consen 84 IQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEML 163 (221)
T ss_pred eecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHH
Confidence 9999854211100 0 0000000 0000 122456789999999999999999
Q ss_pred HHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCcccc
Q 024135 126 KDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR 172 (272)
Q Consensus 126 ~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~ 172 (272)
..+|.+|.....+.++.... +.|||+|.+...|..|...+.+..+.
T Consensus 164 ~~lf~qf~g~keir~i~~~~-~iAfve~~~d~~a~~a~~~lq~~~it 209 (221)
T KOG4206|consen 164 SDLFEQFPGFKEIRLIPPRS-GIAFVEFLSDRQASAAQQALQGFKIT 209 (221)
T ss_pred HHHHhhCcccceeEeccCCC-ceeEEecchhhhhHHHhhhhccceec
Confidence 99999999988888876543 48999999999999999999998876
No 30
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.86 E-value=3.4e-21 Score=166.23 Aligned_cols=164 Identities=22% Similarity=0.403 Sum_probs=135.6
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec--CCC----CCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEcc
Q 024135 8 TLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPR----PPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (272)
Q Consensus 8 ~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~--~~~----~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (272)
+|||.||++++|.++|..+|...|.|.++.|.. ++. +.|||||+|.++++|+.|+..|+|+.|.|..|.|.++.
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 399999999999999999999999999998843 332 34999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEec----CCCCeEEEEeCCHH
Q 024135 82 GGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD----GSGTTGIVDYTNYD 157 (272)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~----~~~~~~fv~f~~~~ 157 (272)
....... . .........+.|+|.|||...+..+++++|..||.+..|.+.+. ...|||||+|.++.
T Consensus 597 ~k~~~~~-g---------K~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ 666 (725)
T KOG0110|consen 597 NKPASTV-G---------KKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPR 666 (725)
T ss_pred Ccccccc-c---------cccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcH
Confidence 2211110 0 11122334689999999999999999999999999999998866 23469999999999
Q ss_pred HHHHHHHHhcCcccccceeeeEEEeecc
Q 024135 158 DMKHAIKKLDDSEFRNAFSRAYVRVREY 185 (272)
Q Consensus 158 ~a~~a~~~l~~~~~~g~~~~~~~~~~~~ 185 (272)
+|..|+++|....+-| +.+.+.|.
T Consensus 667 ea~nA~~al~STHlyG----RrLVLEwA 690 (725)
T KOG0110|consen 667 EAKNAFDALGSTHLYG----RRLVLEWA 690 (725)
T ss_pred HHHHHHHhhcccceec----hhhheehh
Confidence 9999999999888888 45555543
No 31
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=99.85 E-value=6.5e-22 Score=159.47 Aligned_cols=166 Identities=15% Similarity=0.148 Sum_probs=121.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecC------CCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEE
Q 024135 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP------PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (272)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~------~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~ 78 (272)
....|.|.||.+++|.++|+.||+.+|.|.++.|..+ +.....|||.|.+...+..|.+ |.+++|-|+.|.|.
T Consensus 6 ~~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~ 84 (479)
T KOG4676|consen 6 SLGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVR 84 (479)
T ss_pred CCceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEE
Confidence 3458999999999999999999999999999999542 2234689999999999999998 88888888888777
Q ss_pred EccCCCCCCCC---------CCCCCCCCC------------CC--C----CCCC----------CccceEEEcCCCCCCC
Q 024135 79 LAHGGRGRSSS---------DRHSSHSSG------------RG--R----GVSR----------RSEYRVLVTGLPSSAS 121 (272)
Q Consensus 79 ~~~~~~~~~~~---------~~~~~~~~~------------~~--~----~~~~----------~~~~~~~v~nl~~~~~ 121 (272)
.......+... ..+.....+ +. . .++. .-..+++|++|+..+.
T Consensus 85 p~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~ 164 (479)
T KOG4676|consen 85 PYGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAI 164 (479)
T ss_pred ecCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhc
Confidence 65533221110 000000000 00 0 0000 1235689999999999
Q ss_pred HHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCcccc
Q 024135 122 WQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR 172 (272)
Q Consensus 122 ~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~ 172 (272)
..++.+.|..+|+|.++.+.......+|.+.|........|+. ++|.++.
T Consensus 165 l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 165 LPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred chhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 9999999999999999999888777789999998888888887 5555443
No 32
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.85 E-value=2.1e-20 Score=138.62 Aligned_cols=80 Identities=36% Similarity=0.606 Sum_probs=74.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEcc
Q 024135 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (272)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (272)
.-.+|.|.||...++.++|..+|++||.|.+|+|+. +.+++|||||.|.+..+|+.|++.|+|.+|+|+.|.|++|+
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 456899999999999999999999999999999965 57889999999999999999999999999999999999987
Q ss_pred CCC
Q 024135 82 GGR 84 (272)
Q Consensus 82 ~~~ 84 (272)
...
T Consensus 92 ygr 94 (256)
T KOG4207|consen 92 YGR 94 (256)
T ss_pred cCC
Confidence 544
No 33
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=1.6e-20 Score=144.77 Aligned_cols=138 Identities=25% Similarity=0.396 Sum_probs=114.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEc
Q 024135 1 MSSRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (272)
Q Consensus 1 ~~~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (272)
|-+...+||||+||...+|++-|..||.++|.|+.++|+.+ .|+|.|+
T Consensus 1 ~~~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~--------------------------------e~~v~wa 48 (321)
T KOG0148|consen 1 NGSDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD--------------------------------ELKVNWA 48 (321)
T ss_pred CCCCCCceEEeeccChhhHHHHHHHHHHhccccccceeehh--------------------------------hhccccc
Confidence 34567899999999999999999999999999999998744 5667776
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecC----CCCeEEEEeCCH
Q 024135 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNY 156 (272)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~----~~~~~fv~f~~~ 156 (272)
..+..++. +.......+||+.|...++-++|++.|.+||+|..+.|++|. .+|||||.|.+.
T Consensus 49 ~~p~nQsk--------------~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k 114 (321)
T KOG0148|consen 49 TAPGNQSK--------------PTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNK 114 (321)
T ss_pred cCcccCCC--------------CccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccch
Confidence 54421111 222335789999999999999999999999999999999985 457999999999
Q ss_pred HHHHHHHHHhcCcccccceeeeEEEeeccccC
Q 024135 157 DDMKHAIKKLDDSEFRNAFSRAYVRVREYDHR 188 (272)
Q Consensus 157 ~~a~~a~~~l~~~~~~g~~~~~~~~~~~~~~~ 188 (272)
++|+.|+.+|||..|++ +.|+..+..++
T Consensus 115 ~dAEnAI~~MnGqWlG~----R~IRTNWATRK 142 (321)
T KOG0148|consen 115 EDAENAIQQMNGQWLGR----RTIRTNWATRK 142 (321)
T ss_pred HHHHHHHHHhCCeeecc----ceeeccccccC
Confidence 99999999999999999 56666665444
No 34
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.84 E-value=9.5e-20 Score=136.75 Aligned_cols=168 Identities=23% Similarity=0.368 Sum_probs=130.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCC----CceEEEEecChHHHHHHHHhcCCcccC---CceEEEE
Q 024135 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRP----PGYAFVEFEEARDAEDAIRGRDGYDFD---GHRLRVE 78 (272)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~----~g~afV~f~~~~~a~~a~~~l~g~~~~---g~~i~v~ 78 (272)
-+||||.+||.++..-+|..||..|--.+...|+.+.+. +.+|||.|.+..+|.+|++.|||..|+ +..|+++
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiE 113 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIE 113 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEee
Confidence 589999999999999999999999987777777665443 379999999999999999999999996 8899999
Q ss_pred EccCCCCCCCCCCCCCCCCC------------------------------------------------------------
Q 024135 79 LAHGGRGRSSSDRHSSHSSG------------------------------------------------------------ 98 (272)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~------------------------------------------------------------ 98 (272)
+++...+.+........+..
T Consensus 114 lAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~a 193 (284)
T KOG1457|consen 114 LAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPSA 193 (284)
T ss_pred ehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCcc
Confidence 99855432221111100000
Q ss_pred -------CCCCCCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCccc
Q 024135 99 -------RGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEF 171 (272)
Q Consensus 99 -------~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~ 171 (272)
.+.......+.+|||.||..++++++|+++|+.|.......+........||++|++.+.|.+||..|+|..+
T Consensus 194 ~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 194 NAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred cchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhccee
Confidence 0001111256789999999999999999999999887777665544444899999999999999999999877
Q ss_pred cc
Q 024135 172 RN 173 (272)
Q Consensus 172 ~g 173 (272)
..
T Consensus 274 s~ 275 (284)
T KOG1457|consen 274 SS 275 (284)
T ss_pred cc
Confidence 53
No 35
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=1e-19 Score=153.04 Aligned_cols=159 Identities=26% Similarity=0.420 Sum_probs=136.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecC-CCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEcc
Q 024135 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP-PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (272)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~-~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (272)
.+....|||.||+++++..+|.++|+.||+|.+|++..+ ..++|| ||+|.+++.|.+|+..+||..+.|+.|.|....
T Consensus 73 ~rd~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~ 151 (369)
T KOG0123|consen 73 QRDPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFE 151 (369)
T ss_pred ccCCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeecc
Confidence 355566999999999999999999999999999999543 348899 999999999999999999999999999998876
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecC---CCCeEEEEeCCHHH
Q 024135 82 GGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG---SGTTGIVDYTNYDD 158 (272)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~---~~~~~fv~f~~~~~ 158 (272)
.......... ......+.++|.+++.+++++.|.++|..+|.|..+.++.+. +.+|+||+|++.++
T Consensus 152 ~~~er~~~~~-----------~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~ 220 (369)
T KOG0123|consen 152 RKEEREAPLG-----------EYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPED 220 (369)
T ss_pred chhhhccccc-----------chhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhH
Confidence 5443221111 123345789999999999999999999999999999999874 34699999999999
Q ss_pred HHHHHHHhcCccccc
Q 024135 159 MKHAIKKLDDSEFRN 173 (272)
Q Consensus 159 a~~a~~~l~~~~~~g 173 (272)
|..|+..|++..+.+
T Consensus 221 a~~av~~l~~~~~~~ 235 (369)
T KOG0123|consen 221 AKKAVETLNGKIFGD 235 (369)
T ss_pred HHHHHHhccCCcCCc
Confidence 999999999999986
No 36
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.82 E-value=1.4e-20 Score=158.29 Aligned_cols=174 Identities=21% Similarity=0.292 Sum_probs=140.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEc
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (272)
+..+|||+-.|+..+++-+|.+||+.+|.|.+|.++. +..++|.|||+|.+.+.+..|+. |.|..+.|.+|.|...
T Consensus 177 Rd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~s 255 (549)
T KOG0147|consen 177 RDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQLS 255 (549)
T ss_pred HhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEeccc
Confidence 4567899999999999999999999999999999954 46789999999999999999997 9999999999999886
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecC----CCCeEEEEeCCH
Q 024135 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNY 156 (272)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~----~~~~~fv~f~~~ 156 (272)
...+... ........ .+.-..+...+||+||..++++++|..+|..||.|..|.+..+. .+|||||+|.+.
T Consensus 256 Eaeknr~--a~~s~a~~---~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~ 330 (549)
T KOG0147|consen 256 EAEKNRA--ANASPALQ---GKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNK 330 (549)
T ss_pred HHHHHHH--Hhcccccc---ccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecH
Confidence 5433220 00000111 01112223339999999999999999999999999999999885 456999999999
Q ss_pred HHHHHHHHHhcCcccccceeeeEEEee
Q 024135 157 DDMKHAIKKLDDSEFRNAFSRAYVRVR 183 (272)
Q Consensus 157 ~~a~~a~~~l~~~~~~g~~~~~~~~~~ 183 (272)
++|..|+.+|||.++.|..+++.+..+
T Consensus 331 ~~ar~a~e~lngfelAGr~ikV~~v~~ 357 (549)
T KOG0147|consen 331 EDARKALEQLNGFELAGRLIKVSVVTE 357 (549)
T ss_pred HHHHHHHHHhccceecCceEEEEEeee
Confidence 999999999999999998776544433
No 37
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.81 E-value=4.5e-18 Score=149.84 Aligned_cols=77 Identities=25% Similarity=0.502 Sum_probs=71.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecC---CCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEcc
Q 024135 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (272)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~---~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (272)
..++|||+||++++++++|+++|+.||+|..+.|..+ +.++|||||+|.+.++|.+|+..||+..|+|+.|.|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 4579999999999999999999999999999999653 5689999999999999999999999999999999999876
No 38
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.81 E-value=5.9e-19 Score=148.61 Aligned_cols=172 Identities=21% Similarity=0.347 Sum_probs=130.6
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEccCCC
Q 024135 8 TLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGR 84 (272)
Q Consensus 8 ~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~~ 84 (272)
.||||||..++++++|+.+|+.||.|..|.+.. +|.++|||||+|.+.++|.+|+..|||..|.|+.|+|.......
T Consensus 280 rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~ 359 (549)
T KOG0147|consen 280 RLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERV 359 (549)
T ss_pred hhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeec
Confidence 389999999999999999999999999999954 58999999999999999999999999999999999998765333
Q ss_pred CCCCC-CCC---C-----CC---CCC------------------------------------C-----CCCCCC------
Q 024135 85 GRSSS-DRH---S-----SH---SSG------------------------------------R-----GRGVSR------ 105 (272)
Q Consensus 85 ~~~~~-~~~---~-----~~---~~~------------------------------------~-----~~~~~~------ 105 (272)
..... ... . .. ..+ + ....+.
T Consensus 360 ~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~ 439 (549)
T KOG0147|consen 360 DTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPAF 439 (549)
T ss_pred ccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCcccccccc
Confidence 22211 000 0 00 000 0 001111
Q ss_pred -CccceEEEcCCCCC--CC--------HHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCcccccc
Q 024135 106 -RSEYRVLVTGLPSS--AS--------WQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNA 174 (272)
Q Consensus 106 -~~~~~~~v~nl~~~--~~--------~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~ 174 (272)
.+..++.+.|+-.. .| .+++.+.+.+||.|..|.|.++.. |+.||.|.+.+.|..|+.+|||.++.|+
T Consensus 440 ~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~-g~VYvrc~s~~~A~~a~~alhgrWF~gr 518 (549)
T KOG0147|consen 440 DIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNSA-GCVYVRCPSAEAAGTAVKALHGRWFAGR 518 (549)
T ss_pred CCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCCC-ceEEEecCcHHHHHHHHHHHhhhhhccc
Confidence 23445555664221 11 477888889999999999888766 8999999999999999999999999998
Q ss_pred eeeeEE
Q 024135 175 FSRAYV 180 (272)
Q Consensus 175 ~~~~~~ 180 (272)
.++..+
T Consensus 519 ~Ita~~ 524 (549)
T KOG0147|consen 519 MITAKY 524 (549)
T ss_pred eeEEEE
Confidence 887543
No 39
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.80 E-value=1.1e-18 Score=128.32 Aligned_cols=81 Identities=26% Similarity=0.525 Sum_probs=74.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEcc
Q 024135 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (272)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (272)
.+++|||+|||+++|+++|+++|++||.|.++.|.. +++++|||||+|.+.++|++|+..||+..|.|+.|+|.++.
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCC
Confidence 578999999999999999999999999999999964 46789999999999999999999999999999999999997
Q ss_pred CCCC
Q 024135 82 GGRG 85 (272)
Q Consensus 82 ~~~~ 85 (272)
....
T Consensus 113 ~~~~ 116 (144)
T PLN03134 113 DRPS 116 (144)
T ss_pred cCCC
Confidence 6543
No 40
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.80 E-value=4.3e-19 Score=144.23 Aligned_cols=162 Identities=20% Similarity=0.363 Sum_probs=132.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEE
Q 024135 2 SSRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (272)
Q Consensus 2 ~~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~ 78 (272)
.....++|||++|+++++++.|++.|.+||+|.++.++. ++.++||+||+|.+++.+.+++. ...+.|.|+.|.+.
T Consensus 2 ~~~~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k 80 (311)
T KOG4205|consen 2 ESGESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPK 80 (311)
T ss_pred CccCCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccce
Confidence 345789999999999999999999999999999999965 47889999999999999998888 66778899999887
Q ss_pred EccCCCCCCCCCCCCCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CCeEEEEeC
Q 024135 79 LAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYT 154 (272)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~----~~~~fv~f~ 154 (272)
-+.+...+...... ....+|||++||.+++++++++.|.+||.|..+.++.|.. .+|+||.|.
T Consensus 81 ~av~r~~~~~~~~~-------------~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~ 147 (311)
T KOG4205|consen 81 RAVSREDQTKVGRH-------------LRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFD 147 (311)
T ss_pred eccCcccccccccc-------------cceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEec
Confidence 77654433221111 1356999999999999999999999999999998888854 469999999
Q ss_pred CHHHHHHHHHHhcCcccccceeee
Q 024135 155 NYDDMKHAIKKLDDSEFRNAFSRA 178 (272)
Q Consensus 155 ~~~~a~~a~~~l~~~~~~g~~~~~ 178 (272)
+.+.+..++. ..-..++|+.+.+
T Consensus 148 ~e~sVdkv~~-~~f~~~~gk~vev 170 (311)
T KOG4205|consen 148 SEDSVDKVTL-QKFHDFNGKKVEV 170 (311)
T ss_pred cccccceecc-cceeeecCceeeE
Confidence 9999988887 5666677744333
No 41
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.80 E-value=1.8e-18 Score=141.55 Aligned_cols=180 Identities=24% Similarity=0.337 Sum_probs=141.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec--CCCCCceEEEEecChHHHHHHHHhcCCcc-cC--CceEEEEE
Q 024135 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYD-FD--GHRLRVEL 79 (272)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~g~~-~~--g~~i~v~~ 79 (272)
..+.||||-|++.+||.+|+++|.+||.|++|.|.. ++.++|||||.|.+.|-|..||+.|||.. +. ..+|.|.|
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkF 202 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKF 202 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEe
Confidence 367899999999999999999999999999999965 47889999999999999999999999954 43 46899999
Q ss_pred ccCCCCCCC-----------------------------------------------------------------------
Q 024135 80 AHGGRGRSS----------------------------------------------------------------------- 88 (272)
Q Consensus 80 ~~~~~~~~~----------------------------------------------------------------------- 88 (272)
+...+....
T Consensus 203 ADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~a~~~qq~~~~~~ 282 (510)
T KOG0144|consen 203 ADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLNATQLQQAAALAA 282 (510)
T ss_pred cccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcchhHHHHHHHhhh
Confidence 871110000
Q ss_pred ----------C----------C-----CC-------C-C-----------------------CCCC--------------
Q 024135 89 ----------S----------D-----RH-------S-S-----------------------HSSG-------------- 98 (272)
Q Consensus 89 ----------~----------~-----~~-------~-~-----------------------~~~~-------------- 98 (272)
. . .+ . . .+..
T Consensus 283 ~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~~a~a~~~sp~aa 362 (510)
T KOG0144|consen 283 AATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGGMAGAGTTSPVAA 362 (510)
T ss_pred hcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhcccccccccccccCcccc
Confidence 0 0 00 0 0 0000
Q ss_pred ----------------------------------------------------CCCCCCCCccceEEEcCCCCCCCHHHHH
Q 024135 99 ----------------------------------------------------RGRGVSRRSEYRVLVTGLPSSASWQDLK 126 (272)
Q Consensus 99 ----------------------------------------------------~~~~~~~~~~~~~~v~nl~~~~~~~~l~ 126 (272)
.........+..+||.+||.+.-+.+|-
T Consensus 363 ~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiyhlPqefgdq~l~ 442 (510)
T KOG0144|consen 363 SLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIYHLPQEFGDQDLI 442 (510)
T ss_pred cccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeeeeCchhhhhHHHH
Confidence 0000011256789999999999999999
Q ss_pred HHHHhcCCeeEEEEEecCCCC----eEEEEeCCHHHHHHHHHHhcCcccccceeeeEEEeec
Q 024135 127 DHMRRAGDVCFSQVFRDGSGT----TGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVRE 184 (272)
Q Consensus 127 ~~f~~~G~i~~~~~~~~~~~~----~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~~~ 184 (272)
..|..||.|..++++.|+.++ |+||.|++..+|..||..|||..++.+..++.+.++.
T Consensus 443 ~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~ 504 (510)
T KOG0144|consen 443 ATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDR 504 (510)
T ss_pred HHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeecc
Confidence 999999999999999998776 8999999999999999999999999976666555443
No 42
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.78 E-value=2.7e-18 Score=132.37 Aligned_cols=172 Identities=22% Similarity=0.320 Sum_probs=133.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec--CCCCCceEEEEecChHHHHHHHHhcCCcc-cCC--ceEEEEE
Q 024135 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYD-FDG--HRLRVEL 79 (272)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~g~~-~~g--~~i~v~~ 79 (272)
..++||||-|.+.-.|||++.+|..||+|.++.+.. ++.++|+|||.|.+..+|..||..|+|.. +.| ..|.|.|
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 467899999999999999999999999999999954 68899999999999999999999999844 444 4688888
Q ss_pred ccCCC---------------------------------------------------------------------------
Q 024135 80 AHGGR--------------------------------------------------------------------------- 84 (272)
Q Consensus 80 ~~~~~--------------------------------------------------------------------------- 84 (272)
+.-.+
T Consensus 98 ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A~ 177 (371)
T KOG0146|consen 98 ADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAAA 177 (371)
T ss_pred ccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccccC
Confidence 77000
Q ss_pred --CCC-CCCC------------CCCC-----C------CC----------------------------------------
Q 024135 85 --GRS-SSDR------------HSSH-----S------SG---------------------------------------- 98 (272)
Q Consensus 85 --~~~-~~~~------------~~~~-----~------~~---------------------------------------- 98 (272)
.+. .... +... . .+
T Consensus 178 Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aay 257 (371)
T KOG0146|consen 178 PVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAAY 257 (371)
T ss_pred CcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhhc
Confidence 000 0000 0000 0 00
Q ss_pred ------------------CCCCCCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CCeEEEEeCCH
Q 024135 99 ------------------RGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNY 156 (272)
Q Consensus 99 ------------------~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~----~~~~fv~f~~~ 156 (272)
.........+++|||-.||.+..+.+|.++|-.||.|+..+++.|.. +.||||.|.++
T Consensus 258 paays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp 337 (371)
T KOG0146|consen 258 PAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNP 337 (371)
T ss_pred chhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCc
Confidence 00001123678999999999999999999999999999999987753 45999999999
Q ss_pred HHHHHHHHHhcCccccccee
Q 024135 157 DDMKHAIKKLDDSEFRNAFS 176 (272)
Q Consensus 157 ~~a~~a~~~l~~~~~~g~~~ 176 (272)
..|+.|+..|||..|+=+..
T Consensus 338 ~SaQaAIqAMNGFQIGMKRL 357 (371)
T KOG0146|consen 338 ASAQAAIQAMNGFQIGMKRL 357 (371)
T ss_pred hhHHHHHHHhcchhhhhhhh
Confidence 99999999999999987433
No 43
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.77 E-value=1.5e-17 Score=130.17 Aligned_cols=84 Identities=36% Similarity=0.626 Sum_probs=77.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEE
Q 024135 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (272)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~ 79 (272)
+.|=+||||+-|+.++++..|+..|+.||+|+.|.|+. +++++|||||+|.++.+...|+...+|.+|+|+.|.|.+
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 45779999999999999999999999999999999954 689999999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 024135 80 AHGGRGR 86 (272)
Q Consensus 80 ~~~~~~~ 86 (272)
-......
T Consensus 178 ERgRTvk 184 (335)
T KOG0113|consen 178 ERGRTVK 184 (335)
T ss_pred ccccccc
Confidence 8755433
No 44
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.75 E-value=2.8e-18 Score=117.69 Aligned_cols=80 Identities=38% Similarity=0.572 Sum_probs=73.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEe---ecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEc
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDL---KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~---~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (272)
+.++||||+||+..+++++|.+||+.+|+|..|.| .....+.|||||+|...++|..|+..+||..+..++|.++|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 57899999999999999999999999999999988 334567899999999999999999999999999999999997
Q ss_pred cCC
Q 024135 81 HGG 83 (272)
Q Consensus 81 ~~~ 83 (272)
.+-
T Consensus 114 ~GF 116 (153)
T KOG0121|consen 114 AGF 116 (153)
T ss_pred ccc
Confidence 653
No 45
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.74 E-value=5.3e-17 Score=120.69 Aligned_cols=74 Identities=19% Similarity=0.172 Sum_probs=66.9
Q ss_pred CCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecC----CCCeEEEEeCCHHHHHHHHHHhcCccccccee
Q 024135 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (272)
Q Consensus 103 ~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~ 176 (272)
+.....+.|.|-||.+.++.++|..+|.+||.|.+|.|..|. ..|||||.|.+..+|++|++.|+|..++|...
T Consensus 8 Pdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRel 85 (256)
T KOG4207|consen 8 PDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGREL 85 (256)
T ss_pred CCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeecccee
Confidence 445567899999999999999999999999999999999885 44699999999999999999999999999443
No 46
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.74 E-value=2.3e-16 Score=125.91 Aligned_cols=177 Identities=21% Similarity=0.277 Sum_probs=136.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeE--------EEe--ecCCCCCceEEEEecChHHHHHHHHhcCCcccCCce
Q 024135 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAH--------IDL--KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHR 74 (272)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~--------v~~--~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~ 74 (272)
-++.|||.|||.++|.+++.++|++||-|.. |+| ...|+.+|-|.|.|...+++..|+..|++..|.|+.
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~ 212 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKK 212 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcE
Confidence 4667999999999999999999999997643 344 335889999999999999999999999999999999
Q ss_pred EEEEEccCCCCCCCCCCCC-------------------CCCCCCCCCCCCCccceEEEcCCCC----CCC-------HHH
Q 024135 75 LRVELAHGGRGRSSSDRHS-------------------SHSSGRGRGVSRRSEYRVLVTGLPS----SAS-------WQD 124 (272)
Q Consensus 75 i~v~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~v~nl~~----~~~-------~~~ 124 (272)
|+|+.|+............ .+.+....+.......+|.+.|+-. ..+ +++
T Consensus 213 ~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlked 292 (382)
T KOG1548|consen 213 LRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKED 292 (382)
T ss_pred EEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHHH
Confidence 9999988433211100000 0011111122334567888888632 112 567
Q ss_pred HHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCcccccceeeeEEE
Q 024135 125 LKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (272)
Q Consensus 125 l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~ 181 (272)
|.+.+.+||.|..|.|....+.|-+.|.|.+.++|..|++.|+|..++|+.+...|-
T Consensus 293 l~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~ 349 (382)
T KOG1548|consen 293 LTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIW 349 (382)
T ss_pred HHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEe
Confidence 778899999999999999989999999999999999999999999999977766554
No 47
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.73 E-value=9.1e-17 Score=139.18 Aligned_cols=176 Identities=20% Similarity=0.281 Sum_probs=136.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEccCC
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~ 83 (272)
+..+.|+|+|||..+..++|..+|..||+|..+.|+..| .-|+|+|.++.+|.+|+..|+...+...++.+.|+...
T Consensus 383 rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~G---~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~d 459 (725)
T KOG0110|consen 383 RSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPGG---TGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPED 459 (725)
T ss_pred hhcceeeeccCccccccHHHHHHhhcccccceeecCccc---ceeeeeecCccchHHHHHHhchhhhccCccccccChhh
Confidence 456889999999999999999999999999999665222 25999999999999999999999999999999998754
Q ss_pred CCCCC--C------CCCC------CC--CCCCC----CC-----------CCCCccceEEEcCCCCCCCHHHHHHHHHhc
Q 024135 84 RGRSS--S------DRHS------SH--SSGRG----RG-----------VSRRSEYRVLVTGLPSSASWQDLKDHMRRA 132 (272)
Q Consensus 84 ~~~~~--~------~~~~------~~--~~~~~----~~-----------~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~ 132 (272)
..... . .... .. ...++ .. ......+.|||.||+.+++.++|..+|...
T Consensus 460 vf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~ 539 (725)
T KOG0110|consen 460 VFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSKQ 539 (725)
T ss_pred hccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHHhc
Confidence 33310 0 0000 00 00000 00 001123349999999999999999999999
Q ss_pred CCeeEEEEEecCCC-------CeEEEEeCCHHHHHHHHHHhcCcccccceeeeEEEe
Q 024135 133 GDVCFSQVFRDGSG-------TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 182 (272)
Q Consensus 133 G~i~~~~~~~~~~~-------~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~ 182 (272)
|.|..+.|..-+.. |||||+|.+.++|+.|+..|+|..++|+.+...+..
T Consensus 540 G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 540 GTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred CeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 99999988765533 899999999999999999999999999776665554
No 48
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.72 E-value=7e-17 Score=126.80 Aligned_cols=78 Identities=22% Similarity=0.346 Sum_probs=73.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEccCCC
Q 024135 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGR 84 (272)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~~ 84 (272)
.++|||+|||+.+|+++|+++|+.||+|.+|.|..++..+|||||+|.++++|..|+. |||..|.|+.|.|.++....
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~~ 81 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDYQ 81 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCCC
Confidence 6899999999999999999999999999999998877778999999999999999996 99999999999999987554
No 49
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.71 E-value=3.4e-17 Score=106.00 Aligned_cols=68 Identities=44% Similarity=0.826 Sum_probs=63.9
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCeeEEEeec--CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEE
Q 024135 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLR 76 (272)
Q Consensus 9 l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~ 76 (272)
|||+|||+++|+++|+++|+.||.|..+.+.. .+...++|||+|.+.++|..|+..|||..|.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 79999999999999999999999999999955 467789999999999999999999999999999875
No 50
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.71 E-value=6e-16 Score=126.05 Aligned_cols=167 Identities=16% Similarity=0.259 Sum_probs=137.2
Q ss_pred CCeEEEcCCCCC-CCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEccCCC
Q 024135 6 SRTLYVGNLPGD-IREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGR 84 (272)
Q Consensus 6 ~~~l~v~nL~~~-~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~~ 84 (272)
+++|.|.||... +|.+.|..+|+-||+|..|+|....+ ..|.|+|.+...|+.|+..|+|..|.|+.|+|.+++...
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk--d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~ 374 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK--DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTN 374 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC--cceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcc
Confidence 789999999775 99999999999999999999965443 689999999999999999999999999999999999765
Q ss_pred CCCCCCCCCCCCC----------------CCCCCCCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCe
Q 024135 85 GRSSSDRHSSHSS----------------GRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTT 148 (272)
Q Consensus 85 ~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~ 148 (272)
-+.+.+.....+- .......-.+..++.+.|+|..+++++|+++|..-|.......+..+...+
T Consensus 375 vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~km 454 (492)
T KOG1190|consen 375 VQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKM 454 (492)
T ss_pred ccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCCcce
Confidence 5444322211100 011112224677999999999999999999999999888777776666679
Q ss_pred EEEEeCCHHHHHHHHHHhcCcccccc
Q 024135 149 GIVDYTNYDDMKHAIKKLDDSEFRNA 174 (272)
Q Consensus 149 ~fv~f~~~~~a~~a~~~l~~~~~~g~ 174 (272)
+++++++.++|..|+-.+++..+++.
T Consensus 455 al~q~~sveeA~~ali~~hnh~lgen 480 (492)
T KOG1190|consen 455 ALPQLESVEEAIQALIDLHNHYLGEN 480 (492)
T ss_pred eecccCChhHhhhhccccccccCCCC
Confidence 99999999999999999999888764
No 51
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.70 E-value=1e-16 Score=141.13 Aligned_cols=127 Identities=22% Similarity=0.306 Sum_probs=99.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcc--CCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEccC
Q 024135 5 ASRTLYVGNLPGDIREREVEDLFYKY--GPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (272)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~--G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~ 82 (272)
..++|||+||+.++++++|+++|+.| |+|..|.+. ++||||+|.+.++|.+|+..|||..|.|+.|.|.|+++
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~-----rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp 306 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI-----RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKP 306 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee-----cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccC
Confidence 45789999999999999999999999 999999876 57999999999999999999999999999999999986
Q ss_pred CCCCCCCCCC-CCCCCC--------CCCCCCCCccceEEEcCCCCCCCHHHHHHHHHhcCCee
Q 024135 83 GRGRSSSDRH-SSHSSG--------RGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVC 136 (272)
Q Consensus 83 ~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~ 136 (272)
.......... ...... ...........+++++|++..+++.-+.++|..+|.+.
T Consensus 307 ~~~~~~~~~~rg~gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~~~f~~~g~~~ 369 (578)
T TIGR01648 307 VDKKSYVRYTRGTGGRGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAPSLHFPRMPGPIR 369 (578)
T ss_pred CCcccccccccccCCCcccccccccccCcccCccccccccccccccccccchhhccccCcccc
Confidence 5432110000 000000 00111123467899999999999999999999998754
No 52
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.70 E-value=8.5e-16 Score=128.17 Aligned_cols=158 Identities=22% Similarity=0.299 Sum_probs=120.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec-CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEccCC
Q 024135 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI-PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (272)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~-~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~ 83 (272)
....|-+.+|||++|++||.+||+.|+ |..+.+.. ++++.|-|||+|.+++++++|++ ++-..+..+.|.|-.+...
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~~ 86 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGGA 86 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccCCc
Confidence 345688899999999999999999985 78787765 49999999999999999999999 8888889999999877543
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeE-EEEEec---CCCCeEEEEeCCHHHH
Q 024135 84 RGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCF-SQVFRD---GSGTTGIVDYTNYDDM 159 (272)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~-~~~~~~---~~~~~~fv~f~~~~~a 159 (272)
...-... ..++ ........|-+.+||+.|+++||.++|+---.+.. +.+..+ +.++-|||+|++.+.|
T Consensus 87 e~d~~~~------~~g~--~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~a 158 (510)
T KOG4211|consen 87 EADWVMR------PGGP--NSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESA 158 (510)
T ss_pred ccccccc------CCCC--CCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHH
Confidence 3211000 0001 11135678999999999999999999987655544 334444 4456899999999999
Q ss_pred HHHHHHhcCccccc
Q 024135 160 KHAIKKLDDSEFRN 173 (272)
Q Consensus 160 ~~a~~~l~~~~~~g 173 (272)
+.|+.. |...|+.
T Consensus 159 e~Al~r-hre~iGh 171 (510)
T KOG4211|consen 159 EIALGR-HRENIGH 171 (510)
T ss_pred HHHHHH-HHHhhcc
Confidence 999984 4445555
No 53
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.67 E-value=5.1e-15 Score=121.70 Aligned_cols=168 Identities=23% Similarity=0.350 Sum_probs=130.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhh-ccCCeeEEEeec--CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEccC
Q 024135 6 SRTLYVGNLPGDIREREVEDLFY-KYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (272)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~-~~G~v~~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~ 82 (272)
.+.+||+|||+++...+|++||. +.|+|..|.|.. .++++|+|.|||+++|.+++|++.||...+.|++|.|.-...
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d 123 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHD 123 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCc
Confidence 45699999999999999999998 789999999965 589999999999999999999999999999999999986553
Q ss_pred CCCCCC---------------------CCCCCCCCCC-------------------------------------------
Q 024135 83 GRGRSS---------------------SDRHSSHSSG------------------------------------------- 98 (272)
Q Consensus 83 ~~~~~~---------------------~~~~~~~~~~------------------------------------------- 98 (272)
...... ..........
T Consensus 124 ~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~F 203 (608)
T KOG4212|consen 124 EQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSASF 203 (608)
T ss_pred hhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhhh
Confidence 110000 0000000000
Q ss_pred -C-CCCCCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecC---CCCeEEEEeCCHHHHHHHHHHhcCccccc
Q 024135 99 -R-GRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG---SGTTGIVDYTNYDDMKHAIKKLDDSEFRN 173 (272)
Q Consensus 99 -~-~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~---~~~~~fv~f~~~~~a~~a~~~l~~~~~~g 173 (272)
. ......+-..++||.||.+.+....|.+.|.-.|.|..+.+-.++ .+++|.++|.++-+|.+|+..+++.-+..
T Consensus 204 lr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~~~ 283 (608)
T KOG4212|consen 204 LRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGLFD 283 (608)
T ss_pred hhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCCcc
Confidence 0 001122345678999999999999999999999999998887665 45699999999999999999999755544
No 54
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.67 E-value=7.5e-16 Score=119.07 Aligned_cols=79 Identities=24% Similarity=0.282 Sum_probs=73.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEccCCC
Q 024135 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGR 84 (272)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~~ 84 (272)
...||||+||++.+|+++|+++|+.||+|.+|.|..++...++|||+|.++++|..|+. |||..|.|+.|.|..+....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~~y~ 82 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWGQYE 82 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCcccc
Confidence 45899999999999999999999999999999999888888999999999999999997 99999999999999876544
No 55
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.65 E-value=3.3e-15 Score=123.16 Aligned_cols=141 Identities=31% Similarity=0.545 Sum_probs=110.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEccC
Q 024135 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (272)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~ 82 (272)
.++|||+|||+.+|+++|.++|..||.|..+.+.. ++.++|||||+|.++++|..|+..++|..|.|+.|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 59999999999999999999999999999999854 478999999999999999999999999999999999999753
Q ss_pred -CCCCCCCC----CCCCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC
Q 024135 83 -GRGRSSSD----RHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG 146 (272)
Q Consensus 83 -~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~ 146 (272)
........ ....................+++.+++..+...++...|..+|.+..+.+......
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDG 263 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCC
Confidence 11111100 00000111122334456788999999999999999999999999977666555433
No 56
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.65 E-value=1.3e-15 Score=100.80 Aligned_cols=78 Identities=37% Similarity=0.525 Sum_probs=73.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEccC
Q 024135 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (272)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~ 82 (272)
.+..|||.|||.++|.+++.++|++||.|.+|.+-.+...+|.|||.|++..+|.+|+..|+|..+.++.|.|-+...
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~ 94 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQP 94 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCH
Confidence 467899999999999999999999999999999977778899999999999999999999999999999999988754
No 57
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=8.4e-16 Score=117.27 Aligned_cols=79 Identities=39% Similarity=0.634 Sum_probs=74.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEee---cCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEc
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLK---IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~---~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (272)
..+++|-|.||+.++++++|++||..||.|..|+|. .+|.++|||||.|.+.++|++||..|||.-+..-.|.|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 367899999999999999999999999999999994 46899999999999999999999999999999999999999
Q ss_pred cC
Q 024135 81 HG 82 (272)
Q Consensus 81 ~~ 82 (272)
++
T Consensus 267 kP 268 (270)
T KOG0122|consen 267 KP 268 (270)
T ss_pred CC
Confidence 75
No 58
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.63 E-value=1.1e-15 Score=98.87 Aligned_cols=68 Identities=34% Similarity=0.727 Sum_probs=60.8
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCeeEEEeecC--CCCCceEEEEecChHHHHHHHHhcCCcccCCceEE
Q 024135 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP--PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLR 76 (272)
Q Consensus 9 l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~--~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~ 76 (272)
|||+|||+++++++|.++|+.||.|..+.+... +..+++|||+|.++++|..|+..+++..|.|+.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999999999999999999543 56789999999999999999999999999999874
No 59
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.61 E-value=6.4e-15 Score=123.48 Aligned_cols=81 Identities=32% Similarity=0.529 Sum_probs=72.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCC--ceEEEEE
Q 024135 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG--HRLRVEL 79 (272)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g--~~i~v~~ 79 (272)
..++|||+|||+++|+++|+++|++||+|+.+.|.. ++++++||||+|.+.++|++||..||+..|.+ ++|.|.+
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 467899999999999999999999999999999854 56788999999999999999999999999876 6899999
Q ss_pred ccCCCC
Q 024135 80 AHGGRG 85 (272)
Q Consensus 80 ~~~~~~ 85 (272)
+.....
T Consensus 272 a~~~~~ 277 (346)
T TIGR01659 272 AEEHGK 277 (346)
T ss_pred CCcccc
Confidence 886543
No 60
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.61 E-value=9.2e-17 Score=117.05 Aligned_cols=84 Identities=26% Similarity=0.504 Sum_probs=76.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEee---cCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEc
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLK---IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~---~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (272)
+.+.-|||||||..+|+.||.-.|++||+|++|.|+ .+|+++||||+.|+++.+...|+..|||..|.|+.|+|.+.
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 456789999999999999999999999999999995 46899999999999999999999999999999999999998
Q ss_pred cCCCCCC
Q 024135 81 HGGRGRS 87 (272)
Q Consensus 81 ~~~~~~~ 87 (272)
.....+.
T Consensus 113 ~~Yk~pk 119 (219)
T KOG0126|consen 113 SNYKKPK 119 (219)
T ss_pred ccccCCc
Confidence 7665543
No 61
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.61 E-value=1.4e-15 Score=105.43 Aligned_cols=78 Identities=27% Similarity=0.502 Sum_probs=72.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEccCC
Q 024135 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (272)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~ 83 (272)
-.|||.++...+|+++|.+.|..||+|+.+.|.. +|..+|||+|+|++.++|++|+..|||..|.|+.|.|.|+-..
T Consensus 73 wIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv~ 152 (170)
T KOG0130|consen 73 WIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFVK 152 (170)
T ss_pred EEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEec
Confidence 4699999999999999999999999999999954 6888999999999999999999999999999999999998644
Q ss_pred C
Q 024135 84 R 84 (272)
Q Consensus 84 ~ 84 (272)
.
T Consensus 153 g 153 (170)
T KOG0130|consen 153 G 153 (170)
T ss_pred C
Confidence 3
No 62
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.61 E-value=3.6e-14 Score=111.43 Aligned_cols=72 Identities=21% Similarity=0.251 Sum_probs=65.9
Q ss_pred CCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecC----CCCeEEEEeCCHHHHHHHHHHhcCcccccc
Q 024135 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNA 174 (272)
Q Consensus 103 ~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~ 174 (272)
....+-.||||+-|++++++..|+..|..||.|..|.|+.+. +.|||||+|++..+...|.++.+|..|+|+
T Consensus 96 a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgr 171 (335)
T KOG0113|consen 96 AIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGR 171 (335)
T ss_pred ccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCc
Confidence 334667899999999999999999999999999999999884 557999999999999999999999999994
No 63
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.60 E-value=5.8e-15 Score=126.11 Aligned_cols=172 Identities=20% Similarity=0.347 Sum_probs=128.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEcc
Q 024135 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (272)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (272)
..+.|||+|||..++++++.+++..||+++.+.+.. ++.++||||.+|.++..+..|+..|||+.++++.|.|..+.
T Consensus 288 ~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~ 367 (500)
T KOG0120|consen 288 SPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAI 367 (500)
T ss_pred ccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhh
Confidence 457799999999999999999999999999999854 36789999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCC---CCCCCC--CCCCCCccceEEEcCC--CCCC-C-------HHHHHHHHHhcCCeeEEEEEec-C-
Q 024135 82 GGRGRSSSDRHSS---HSSGRG--RGVSRRSEYRVLVTGL--PSSA-S-------WQDLKDHMRRAGDVCFSQVFRD-G- 144 (272)
Q Consensus 82 ~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~v~nl--~~~~-~-------~~~l~~~f~~~G~i~~~~~~~~-~- 144 (272)
............. ...... .+....+...+...|+ +.++ . .++++..+.+||.|..|.+... .
T Consensus 368 ~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~ 447 (500)
T KOG0120|consen 368 VGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPD 447 (500)
T ss_pred ccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCC
Confidence 6554433332200 000000 0122223334444442 1111 1 2556667889999999998877 2
Q ss_pred -----CCCeEEEEeCCHHHHHHHHHHhcCccccccee
Q 024135 145 -----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (272)
Q Consensus 145 -----~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~ 176 (272)
..|..||+|.+.+++++|++.|+|..++|+++
T Consensus 448 ~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtV 484 (500)
T KOG0120|consen 448 ENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTV 484 (500)
T ss_pred CCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEE
Confidence 23578999999999999999999999999664
No 64
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.60 E-value=3.7e-14 Score=104.29 Aligned_cols=79 Identities=24% Similarity=0.364 Sum_probs=69.0
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecC----CCCeEEEEeCCHHHHHHHHHHhcCcccccceeeeEE
Q 024135 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (272)
Q Consensus 105 ~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~ 180 (272)
.....+|||+|||..+++++|+++|.+||.|..+.++.+. ..+||||+|.+.++|+.|++.||+..++| ..+
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~G----r~l 106 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNG----RHI 106 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC----EEE
Confidence 3456799999999999999999999999999999999875 35699999999999999999999999999 455
Q ss_pred Eeecccc
Q 024135 181 RVREYDH 187 (272)
Q Consensus 181 ~~~~~~~ 187 (272)
.|.+...
T Consensus 107 ~V~~a~~ 113 (144)
T PLN03134 107 RVNPAND 113 (144)
T ss_pred EEEeCCc
Confidence 5555443
No 65
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.59 E-value=1.7e-14 Score=117.77 Aligned_cols=176 Identities=17% Similarity=0.226 Sum_probs=130.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCC--cccCCceEEEEEc
Q 024135 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDG--YDFDGHRLRVELA 80 (272)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g--~~~~g~~i~v~~~ 80 (272)
..+++.|+++|||++++|++|.+++..||.|..+.+.. .+..|||+|.++++|...+..... -.+.|++|.|+|+
T Consensus 25 ~~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lk---GknQAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq~s 101 (492)
T KOG1190|consen 25 AEPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLK---GKNQAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQYS 101 (492)
T ss_pred cCCcceeEeccCCccccHHHHHHhcccccceeeeeeec---cchhhhhhhcchhhhhheeecccccCccccCcceeehhh
Confidence 45899999999999999999999999999999998863 345899999999999885554433 3356888888886
Q ss_pred cCCCCCCCCCC-------------------CCCCCCCC--CCCCCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEE
Q 024135 81 HGGRGRSSSDR-------------------HSSHSSGR--GRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQ 139 (272)
Q Consensus 81 ~~~~~~~~~~~-------------------~~~~~~~~--~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~ 139 (272)
....-...... .......- .......+-..++|+|+-..++.+.|.++|+.||.|..|.
T Consensus 102 n~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIi 181 (492)
T KOG1190|consen 102 NHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKII 181 (492)
T ss_pred hHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcceeEEEE
Confidence 52111000000 00000000 0112222445778899999999999999999999999988
Q ss_pred EEecCCCCeEEEEeCCHHHHHHHHHHhcCcccccceeeeEEE
Q 024135 140 VFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (272)
Q Consensus 140 ~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~ 181 (272)
.+....+--|+|+|.+...|..|...|+|..|-+.+++.+|.
T Consensus 182 TF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId 223 (492)
T KOG1190|consen 182 TFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRID 223 (492)
T ss_pred EEecccchhhhhhccchhhHHHHHHhccCCcccCceeEEEee
Confidence 887766667999999999999999999999887655555544
No 66
>PLN03213 repressor of silencing 3; Provisional
Probab=99.58 E-value=8e-15 Score=122.40 Aligned_cols=78 Identities=19% Similarity=0.393 Sum_probs=71.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecCh--HHHHHHHHhcCCcccCCceEEEEEc
Q 024135 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEA--RDAEDAIRGRDGYDFDGHRLRVELA 80 (272)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~--~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (272)
......||||||++.+++++|..+|..||.|..|.|+.... +|||||+|... .++.+||..|||..|.|+.|+|+.|
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETG-RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKA 85 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKG-RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKA 85 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccC-CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeec
Confidence 34567899999999999999999999999999999975433 99999999987 6899999999999999999999998
Q ss_pred c
Q 024135 81 H 81 (272)
Q Consensus 81 ~ 81 (272)
+
T Consensus 86 K 86 (759)
T PLN03213 86 K 86 (759)
T ss_pred c
Confidence 8
No 67
>smart00362 RRM_2 RNA recognition motif.
Probab=99.57 E-value=2.6e-14 Score=92.50 Aligned_cols=70 Identities=46% Similarity=0.848 Sum_probs=64.7
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecC-CCCCceEEEEecChHHHHHHHHhcCCcccCCceEEE
Q 024135 8 TLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP-PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (272)
Q Consensus 8 ~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~-~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v 77 (272)
+|||+|||+.++.++|.++|..||.|..+.+..+ +.+.++|||+|.+.++|..|+..++|..+.|+.|.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 5899999999999999999999999999988654 566799999999999999999999999999999886
No 68
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.57 E-value=2.4e-13 Score=109.89 Aligned_cols=174 Identities=17% Similarity=0.212 Sum_probs=136.2
Q ss_pred CCCCeEEEcCCCCC-CCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEccC
Q 024135 4 RASRTLYVGNLPGD-IREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (272)
Q Consensus 4 ~~~~~l~v~nL~~~-~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~ 82 (272)
-+.++++|.+|... ++.+.|.++|..||.|..|+++++. .|.|.|++-+....+.|+..||+..+.|..|.|.+++.
T Consensus 285 ~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk--~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ 362 (494)
T KOG1456|consen 285 APGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK--PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQ 362 (494)
T ss_pred CCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc--cceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccc
Confidence 45789999999775 8889999999999999999997654 57899999999999999999999999999999999885
Q ss_pred CCCCCCC----------------CCCCCCCC--CCCCCCCCCccceEEEcCCCCCCCHHHHHHHHHhcC-CeeEEEEEec
Q 024135 83 GRGRSSS----------------DRHSSHSS--GRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRD 143 (272)
Q Consensus 83 ~~~~~~~----------------~~~~~~~~--~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G-~i~~~~~~~~ 143 (272)
.--.... .....+.. .......+.+...|...|.|..+|++.|.++|...+ ....++++..
T Consensus 363 ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svkvFp~ 442 (494)
T KOG1456|consen 363 NFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVKVFPL 442 (494)
T ss_pred cccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceEEeecc
Confidence 4322110 00000111 112234456788999999999999999999998877 3456666655
Q ss_pred CC--CCeEEEEeCCHHHHHHHHHHhcCcccccceeeeE
Q 024135 144 GS--GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (272)
Q Consensus 144 ~~--~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~ 179 (272)
+. ...|.++|++..+|.+|+..+|...+.+......
T Consensus 443 kserSssGllEfe~~s~Aveal~~~NH~pi~~p~gs~P 480 (494)
T KOG1456|consen 443 KSERSSSGLLEFENKSDAVEALMKLNHYPIEGPNGSFP 480 (494)
T ss_pred cccccccceeeeehHHHHHHHHHHhccccccCCCCCCC
Confidence 43 3379999999999999999999999998654433
No 69
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=4.5e-15 Score=118.95 Aligned_cols=81 Identities=23% Similarity=0.392 Sum_probs=75.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEee---cCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEc
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLK---IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~---~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (272)
-|.++|||..|+|-+|.++|.-+|+.||.|..+.++ .+|.+..||||+|.+.+++++|+..|++..|.++.|+|.|+
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 578999999999999999999999999999999995 46888999999999999999999999999999999999998
Q ss_pred cCCC
Q 024135 81 HGGR 84 (272)
Q Consensus 81 ~~~~ 84 (272)
..-.
T Consensus 317 QSVs 320 (479)
T KOG0415|consen 317 QSVS 320 (479)
T ss_pred hhhh
Confidence 7433
No 70
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=5.1e-15 Score=111.21 Aligned_cols=83 Identities=35% Similarity=0.623 Sum_probs=76.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEc
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (272)
...+|||||+|...+++.-|...|-.||.|++|.++. +.+.+|||||+|...|+|.+||..||+..|.|+.|.|.++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 3568999999999999999999999999999999965 4788999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 024135 81 HGGRGR 86 (272)
Q Consensus 81 ~~~~~~ 86 (272)
++.+..
T Consensus 88 kP~kik 93 (298)
T KOG0111|consen 88 KPEKIK 93 (298)
T ss_pred CCcccc
Confidence 976644
No 71
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.55 E-value=1.3e-14 Score=110.45 Aligned_cols=75 Identities=25% Similarity=0.428 Sum_probs=68.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEee---cCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEccC
Q 024135 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLK---IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (272)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~---~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~ 82 (272)
++||||||+|.+..+.|+++|++||+|++..++ .+++++|||||.|.+.++|..|+. -.+-.|+|+...|+++.-
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~-dp~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACK-DPNPIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhc-CCCCcccccccccchhhh
Confidence 579999999999999999999999999998884 468999999999999999999999 456789999999998764
No 72
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.54 E-value=2.9e-14 Score=113.31 Aligned_cols=81 Identities=23% Similarity=0.458 Sum_probs=74.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecC-CCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEccC
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP-PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~-~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~ 82 (272)
...+.|+|.|||...-+-||+.+|++||.|.+|.|+.+ -.+||||||.|++++||++|-.+|||.++.|++|.|..+..
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATa 173 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATA 173 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccch
Confidence 34678999999999999999999999999999999664 56899999999999999999999999999999999999875
Q ss_pred CC
Q 024135 83 GR 84 (272)
Q Consensus 83 ~~ 84 (272)
..
T Consensus 174 rV 175 (376)
T KOG0125|consen 174 RV 175 (376)
T ss_pred hh
Confidence 43
No 73
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.54 E-value=4e-13 Score=110.74 Aligned_cols=75 Identities=21% Similarity=0.388 Sum_probs=64.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEee--cCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEE
Q 024135 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLK--IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (272)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~--~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~ 79 (272)
....+||.||...+..+.|.+.|.--|.|..|.+- +.+.++|+|.|+|.++-.|.+||..|++..+..++..+.+
T Consensus 214 l~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~~~~~~~~Rl 290 (608)
T KOG4212|consen 214 LHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGLFDRRMTVRL 290 (608)
T ss_pred ccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCCccccceeec
Confidence 35679999999999999999999999999998883 4578899999999999999999999987666666655555
No 74
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.54 E-value=5.3e-13 Score=107.70 Aligned_cols=76 Identities=25% Similarity=0.502 Sum_probs=69.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEcc
Q 024135 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (272)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (272)
=+.|||..+.++++++||+..|+.||+|+.|.+.. ....+||+||+|.+..+...|+..||=..++|+.|.|..+.
T Consensus 210 fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 210 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred hheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence 36799999999999999999999999999999954 35679999999999999999999999999999999997654
No 75
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.52 E-value=1.1e-13 Score=89.33 Aligned_cols=66 Identities=20% Similarity=0.383 Sum_probs=60.2
Q ss_pred EEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecC---CCCeEEEEeCCHHHHHHHHHHhcCccccccee
Q 024135 111 VLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG---SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (272)
Q Consensus 111 ~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~---~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~ 176 (272)
|||+|||.++++++|.++|.+||.+..+.+..+. ..++|||+|.+.++|+.|++.|+|..++|+.+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~i 69 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKI 69 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCc
Confidence 7999999999999999999999999999999862 33599999999999999999999999999543
No 76
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.50 E-value=2.4e-13 Score=88.38 Aligned_cols=72 Identities=42% Similarity=0.815 Sum_probs=65.9
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCC--CCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEE
Q 024135 8 TLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPP--RPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (272)
Q Consensus 8 ~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~--~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~ 79 (272)
+|+|+|||+.+++++|.++|..||.|..+.+..+. .+.++|||+|.+.++|..|+..+++..+.|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 58999999999999999999999999999996543 4578999999999999999999999999999998864
No 77
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.49 E-value=2.3e-13 Score=83.74 Aligned_cols=56 Identities=38% Similarity=0.661 Sum_probs=50.9
Q ss_pred HHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEc
Q 024135 23 VEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (272)
Q Consensus 23 l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (272)
|.++|++||+|..+.+.... .++|||+|.+.++|..|+..|||..|.|+.|+|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~--~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK--RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS--TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999999997544 589999999999999999999999999999999986
No 78
>smart00360 RRM RNA recognition motif.
Probab=99.47 E-value=3.1e-13 Score=87.04 Aligned_cols=67 Identities=45% Similarity=0.804 Sum_probs=61.7
Q ss_pred EcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEE
Q 024135 11 VGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (272)
Q Consensus 11 v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v 77 (272)
|+|||..+++++|+++|..||.|..+.+.. ++.++++|||+|.+.++|..|+..|++..+.|+.|.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 689999999999999999999999999854 3567899999999999999999999999999999887
No 79
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.47 E-value=1.4e-11 Score=99.85 Aligned_cols=176 Identities=18% Similarity=0.164 Sum_probs=131.5
Q ss_pred CCCCCeEEEcCCCC--CCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccC--CceEEEE
Q 024135 3 SRASRTLYVGNLPG--DIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFD--GHRLRVE 78 (272)
Q Consensus 3 ~~~~~~l~v~nL~~--~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~--g~~i~v~ 78 (272)
..++..|.+.=|++ .+|.+-|..+...+|.|..|.|.+. +--.|.|||.+.+.|++|.+.|||..|. -..|+|+
T Consensus 117 ~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIe 194 (494)
T KOG1456|consen 117 ATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIE 194 (494)
T ss_pred CCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cceeeEEeechhHHHHHHHhhcccccccccceeEEEE
Confidence 45677777665544 6999999999999999999988532 2347999999999999999999998873 5689999
Q ss_pred EccCCCCCCC----------------------------------CCCCCCCCC-------C---C---------------
Q 024135 79 LAHGGRGRSS----------------------------------SDRHSSHSS-------G---R--------------- 99 (272)
Q Consensus 79 ~~~~~~~~~~----------------------------------~~~~~~~~~-------~---~--------------- 99 (272)
|+++.+-... ...+..+.+ + +
T Consensus 195 yAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~ 274 (494)
T KOG1456|consen 195 YAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRD 274 (494)
T ss_pred ecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCcccccc
Confidence 9984321000 000000000 0 0
Q ss_pred ---C-CCCCCCccceEEEcCCCCC-CCHHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCcccccc
Q 024135 100 ---G-RGVSRRSEYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNA 174 (272)
Q Consensus 100 ---~-~~~~~~~~~~~~v~nl~~~-~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~ 174 (272)
. ......++..+.|.+|... +.-+.|..+|..||.|..|.+++.+.+ .|.|++.+..+.+.|+..||+..+-|.
T Consensus 275 ~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~g-tamVemgd~~aver~v~hLnn~~lfG~ 353 (494)
T KOG1456|consen 275 GRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPG-TAMVEMGDAYAVERAVTHLNNIPLFGG 353 (494)
T ss_pred CCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccc-eeEEEcCcHHHHHHHHHHhccCccccc
Confidence 0 0112245778999999865 588999999999999999999998765 799999999999999999999999996
Q ss_pred eeeeEEE
Q 024135 175 FSRAYVR 181 (272)
Q Consensus 175 ~~~~~~~ 181 (272)
+.....+
T Consensus 354 kl~v~~S 360 (494)
T KOG1456|consen 354 KLNVCVS 360 (494)
T ss_pred eEEEeec
Confidence 5544433
No 80
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=3.5e-12 Score=107.56 Aligned_cols=165 Identities=22% Similarity=0.336 Sum_probs=113.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEee-cC-----CCCCc---eEEEEecChHHHHHHHHhcCCcccCCceE
Q 024135 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLK-IP-----PRPPG---YAFVEFEEARDAEDAIRGRDGYDFDGHRL 75 (272)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~-~~-----~~~~g---~afV~f~~~~~a~~a~~~l~g~~~~g~~i 75 (272)
-++.||||+||+++++++|...|..||.+. |... +. -.++| |+|+.|+++.+++..+..+.- ....+
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~~~~ 333 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GEGNY 333 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---cccce
Confidence 467899999999999999999999999765 2222 11 12356 999999999999887775543 22233
Q ss_pred EEEEccCCCCCCC----CCCCCCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHH-hcCCeeEEEEEecC----CC
Q 024135 76 RVELAHGGRGRSS----SDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMR-RAGDVCFSQVFRDG----SG 146 (272)
Q Consensus 76 ~v~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~-~~G~i~~~~~~~~~----~~ 146 (272)
.+..+....+.+. ........--......-.+..|||||+||-.++.++|..+|. -||.|.++.|-.|+ +.
T Consensus 334 yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPk 413 (520)
T KOG0129|consen 334 YFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPK 413 (520)
T ss_pred EEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCC
Confidence 3322222211110 000000000011223445778999999999999999999998 79999999999884 45
Q ss_pred CeEEEEeCCHHHHHHHHHH----hcCccccc
Q 024135 147 TTGIVDYTNYDDMKHAIKK----LDDSEFRN 173 (272)
Q Consensus 147 ~~~fv~f~~~~~a~~a~~~----l~~~~~~g 173 (272)
|-|=|+|.+...-.+||.+ ++..+++.
T Consensus 414 GaGRVtFsnqqsYi~AIsarFvql~h~d~~K 444 (520)
T KOG0129|consen 414 GAGRVTFSNQQAYIKAISARFVQLDHTDIDK 444 (520)
T ss_pred CcceeeecccHHHHHHHhhheEEEeccccce
Confidence 6799999999999999985 45555543
No 81
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.45 E-value=3.3e-13 Score=114.79 Aligned_cols=78 Identities=33% Similarity=0.672 Sum_probs=74.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEccCC
Q 024135 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (272)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~ 83 (272)
++|||||||+++++++|..+|+..|.|.+++++. +|.++||||++|.++++|..|+..|||..+.|+.|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 8999999999999999999999999999999965 5889999999999999999999999999999999999998855
Q ss_pred C
Q 024135 84 R 84 (272)
Q Consensus 84 ~ 84 (272)
.
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 4
No 82
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.43 E-value=3.4e-13 Score=111.42 Aligned_cols=76 Identities=32% Similarity=0.569 Sum_probs=70.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEccCCCCC
Q 024135 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRGR 86 (272)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~~~~ 86 (272)
+.|||.||+.++|++.|+++|+.||.|..|+.. +.||||.|.+-++|.+||..+||+.|.|..|.|.+|++..+.
T Consensus 260 KvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~-----rDYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~ 334 (506)
T KOG0117|consen 260 KVLYVRNLMESTTEETLKKLFNEFGKVERVKKP-----RDYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKK 334 (506)
T ss_pred eeeeeeccchhhhHHHHHHHHHhccceEEeecc-----cceeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhhh
Confidence 579999999999999999999999999999876 559999999999999999999999999999999999976554
Q ss_pred C
Q 024135 87 S 87 (272)
Q Consensus 87 ~ 87 (272)
.
T Consensus 335 k 335 (506)
T KOG0117|consen 335 K 335 (506)
T ss_pred c
Confidence 3
No 83
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.40 E-value=2.7e-12 Score=101.11 Aligned_cols=68 Identities=15% Similarity=0.246 Sum_probs=62.5
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecC-CCCeEEEEeCCHHHHHHHHHHhcCccccccee
Q 024135 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG-SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (272)
Q Consensus 108 ~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~-~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~ 176 (272)
..+|||+||++.+++++|+++|+.||.|..+.+..+. .++||||+|++.++|+.|+. |+|..+.|+.+
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V 72 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSV 72 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceE
Confidence 4699999999999999999999999999999999886 46799999999999999996 99999999443
No 84
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.38 E-value=4.3e-12 Score=93.15 Aligned_cols=79 Identities=18% Similarity=0.246 Sum_probs=68.0
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC-CCeEEEEeCCHHHHHHHHHHhcCcccccceeeeEEEeecc
Q 024135 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS-GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREY 185 (272)
Q Consensus 107 ~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~-~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~~~~ 185 (272)
....|||+|||.++.+.+|+++|.+||.|..|.+..-+. ..||||+|+++.+|+.|+..-+|..++| ..++|+..
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg----~rLRVEfp 80 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDG----CRLRVEFP 80 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCc----ceEEEEec
Confidence 357899999999999999999999999999999876554 4599999999999999999999999999 55566655
Q ss_pred ccCC
Q 024135 186 DHRR 189 (272)
Q Consensus 186 ~~~r 189 (272)
+..+
T Consensus 81 rggr 84 (241)
T KOG0105|consen 81 RGGR 84 (241)
T ss_pred cCCC
Confidence 4443
No 85
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.37 E-value=7.6e-13 Score=103.71 Aligned_cols=75 Identities=41% Similarity=0.716 Sum_probs=71.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEccCC
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~ 83 (272)
+++++|+||||.+.++.++|+..|++||+|..++|. ++|+||.|.-.++|..|+..|||.+|.|+.++|+++...
T Consensus 76 k~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv-----kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 76 KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV-----KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred CCccccccCCCCccccCHHHhhhhcccCCceeeeee-----cceeEEEEeeccchHHHHhcccccccccceeeeeeeccc
Confidence 588999999999999999999999999999999998 679999999999999999999999999999999998643
No 86
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=8e-12 Score=95.75 Aligned_cols=81 Identities=26% Similarity=0.300 Sum_probs=72.8
Q ss_pred CCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----CeEEEEeCCHHHHHHHHHHhcCcccccceeeeE
Q 024135 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (272)
Q Consensus 104 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~ 179 (272)
......+|-|.||+.++++.+|+++|.+||.|..+.+..++.+ |||||.|.+.++|.+|++.|||.-+++ ..
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~----LI 260 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDN----LI 260 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccce----EE
Confidence 3446788999999999999999999999999999999999765 599999999999999999999999988 77
Q ss_pred EEeeccccC
Q 024135 180 VRVREYDHR 188 (272)
Q Consensus 180 ~~~~~~~~~ 188 (272)
++|++.+++
T Consensus 261 LrvEwskP~ 269 (270)
T KOG0122|consen 261 LRVEWSKPS 269 (270)
T ss_pred EEEEecCCC
Confidence 888877653
No 87
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.37 E-value=3.3e-12 Score=88.86 Aligned_cols=76 Identities=21% Similarity=0.314 Sum_probs=68.4
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----CeEEEEeCCHHHHHHHHHHhcCcccccceeeeEEE
Q 024135 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (272)
Q Consensus 106 ~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~ 181 (272)
..+|.|||.++.+.+++++|.+.|..||+|..+++.-+..+ |||+|+|++.++|+.|+..+||..+-| ..+.
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~----q~v~ 145 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLG----QNVS 145 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhC----Ccee
Confidence 46799999999999999999999999999999999888765 489999999999999999999999999 5556
Q ss_pred eecc
Q 024135 182 VREY 185 (272)
Q Consensus 182 ~~~~ 185 (272)
|++.
T Consensus 146 VDw~ 149 (170)
T KOG0130|consen 146 VDWC 149 (170)
T ss_pred EEEE
Confidence 6653
No 88
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.36 E-value=2.5e-12 Score=88.70 Aligned_cols=77 Identities=17% Similarity=0.208 Sum_probs=68.4
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----CeEEEEeCCHHHHHHHHHHhcCcccccceeeeEEE
Q 024135 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (272)
Q Consensus 106 ~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~ 181 (272)
...++|||+||+.-+++++|.++|+.+|+|..|.|--+..+ |||||+|...++|..|+..+++..++. ..|+
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLdd----r~ir 109 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDD----RPIR 109 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccc----ccee
Confidence 45689999999999999999999999999999988777543 599999999999999999999999998 6677
Q ss_pred eeccc
Q 024135 182 VREYD 186 (272)
Q Consensus 182 ~~~~~ 186 (272)
++++-
T Consensus 110 ~D~D~ 114 (153)
T KOG0121|consen 110 IDWDA 114 (153)
T ss_pred eeccc
Confidence 77653
No 89
>smart00361 RRM_1 RNA recognition motif.
Probab=99.35 E-value=4.5e-12 Score=81.57 Aligned_cols=58 Identities=28% Similarity=0.546 Sum_probs=51.5
Q ss_pred HHHHHHHhh----ccCCeeEEE-eec---C--CCCCceEEEEecChHHHHHHHHhcCCcccCCceEEE
Q 024135 20 EREVEDLFY----KYGPIAHID-LKI---P--PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (272)
Q Consensus 20 ~~~l~~~F~----~~G~v~~v~-~~~---~--~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v 77 (272)
+++|+++|. .||.|..+. +.. + +.++|||||+|.+.++|.+|+..|||..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578999998 999999985 422 3 678999999999999999999999999999999976
No 90
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.35 E-value=5.3e-12 Score=81.48 Aligned_cols=65 Identities=23% Similarity=0.412 Sum_probs=58.1
Q ss_pred EEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC---CCeEEEEeCCHHHHHHHHHHhcCcccccce
Q 024135 111 VLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (272)
Q Consensus 111 ~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~ 175 (272)
|+|+|||+.+++++|.++|..+|.|..+.+..++. .++|||+|.+.++|..|++.+++..++|+.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~ 68 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRK 68 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEE
Confidence 78999999999999999999999999999998864 459999999999999999999999999843
No 91
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.34 E-value=2.6e-12 Score=112.77 Aligned_cols=79 Identities=30% Similarity=0.558 Sum_probs=73.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEccCC
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~ 83 (272)
..++|||||+|+.++++.||.++|+.||+|.+|.|+ .++++|||.+..-.+|.+|+..|++..+.++.|+|.|+.+.
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li---~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~ 495 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILI---PPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGK 495 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHhcccceeEeec---cCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccC
Confidence 468999999999999999999999999999999997 56899999999999999999999999999999999999865
Q ss_pred CC
Q 024135 84 RG 85 (272)
Q Consensus 84 ~~ 85 (272)
..
T Consensus 496 G~ 497 (894)
T KOG0132|consen 496 GP 497 (894)
T ss_pred Cc
Confidence 53
No 92
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.31 E-value=1.5e-12 Score=98.03 Aligned_cols=139 Identities=20% Similarity=0.279 Sum_probs=113.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec--CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEccC
Q 024135 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (272)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~ 82 (272)
..+||||+||...++++-|.++|-+-|+|..|.|.. ++..+ ||||.|.++-++.-|+..+||..+.+..|+|.+-.+
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G 86 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCG 86 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhcccccC
Confidence 457999999999999999999999999999999954 45555 999999999999999999999999999999977543
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC---CCeEEEEeCCHHHH
Q 024135 83 GRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDM 159 (272)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~---~~~~fv~f~~~~~a 159 (272)
.... -|...++.+.+...|+..|.+..+.+..+.. ..++|+.+.-.-..
T Consensus 87 ~sha----------------------------pld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~ 138 (267)
T KOG4454|consen 87 NSHA----------------------------PLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAV 138 (267)
T ss_pred CCcc----------------------------hhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcC
Confidence 2211 1455678888888899999888887776654 34788888877777
Q ss_pred HHHHHHhcCcccc
Q 024135 160 KHAIKKLDDSEFR 172 (272)
Q Consensus 160 ~~a~~~l~~~~~~ 172 (272)
..++....+.+..
T Consensus 139 P~~~~~y~~l~~~ 151 (267)
T KOG4454|consen 139 PFALDLYQGLELF 151 (267)
T ss_pred cHHhhhhcccCcC
Confidence 7888877766554
No 93
>PLN03213 repressor of silencing 3; Provisional
Probab=99.30 E-value=1.5e-11 Score=103.06 Aligned_cols=76 Identities=16% Similarity=0.261 Sum_probs=67.9
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCH--HHHHHHHHHhcCcccccceeeeEEEee
Q 024135 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNY--DDMKHAIKKLDDSEFRNAFSRAYVRVR 183 (272)
Q Consensus 106 ~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~--~~a~~a~~~l~~~~~~g~~~~~~~~~~ 183 (272)
.....||||||++.+++++|..+|..||.|..+.|+....+|||||+|... .++.+|+..|||..+.| ..|.|.
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKG----R~LKVN 83 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKG----GRLRLE 83 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecC----ceeEEe
Confidence 345799999999999999999999999999999999887788999999987 78999999999999999 555555
Q ss_pred cc
Q 024135 184 EY 185 (272)
Q Consensus 184 ~~ 185 (272)
..
T Consensus 84 KA 85 (759)
T PLN03213 84 KA 85 (759)
T ss_pred ec
Confidence 43
No 94
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.28 E-value=1.8e-11 Score=104.93 Aligned_cols=171 Identities=21% Similarity=0.326 Sum_probs=131.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcc-----------C-CeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccC
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKY-----------G-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFD 71 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~-----------G-~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~ 71 (272)
.....++|++||+.++++.+..+|..- | .|..+.+. ..++||||+|.+.++|..|+. +++..+.
T Consensus 173 ~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n---~~~nfa~ie~~s~~~at~~~~-~~~~~f~ 248 (500)
T KOG0120|consen 173 RQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLN---LEKNFAFIEFRSISEATEAMA-LDGIIFE 248 (500)
T ss_pred hhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeec---ccccceeEEecCCCchhhhhc-ccchhhC
Confidence 445679999999999999999999754 2 25555554 446899999999999999999 9999999
Q ss_pred CceEEEEEccCCCCCCCCCCC----CCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC--
Q 024135 72 GHRLRVELAHGGRGRSSSDRH----SSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS-- 145 (272)
Q Consensus 72 g~~i~v~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~-- 145 (272)
|..+++.-.......+..... ..................++|++||..+++.++.++...||.+....++.+..
T Consensus 249 g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g 328 (500)
T KOG0120|consen 249 GRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATG 328 (500)
T ss_pred CCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccc
Confidence 998887654433322221111 11122222233445677899999999999999999999999999888877754
Q ss_pred --CCeEEEEeCCHHHHHHHHHHhcCcccccceeee
Q 024135 146 --GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (272)
Q Consensus 146 --~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~ 178 (272)
++|||.+|.+......|+..|||+.+++....+
T Consensus 329 ~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvv 363 (500)
T KOG0120|consen 329 NSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVV 363 (500)
T ss_pred cccceeeeeeeCCcchhhhhcccchhhhcCceeEe
Confidence 469999999999999999999999999855433
No 95
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.28 E-value=3e-11 Score=93.75 Aligned_cols=67 Identities=21% Similarity=0.346 Sum_probs=61.6
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC-CCeEEEEeCCHHHHHHHHHHhcCcccccce
Q 024135 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS-GTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (272)
Q Consensus 108 ~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~-~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~ 175 (272)
+++|+|+||++.+++++|+++|+.||+|..|.+..+.. +++|||+|+++++++.|+. |+|..|.+..
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~ 72 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQR 72 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCce
Confidence 57999999999999999999999999999999998854 3599999999999999995 9999999944
No 96
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.28 E-value=2.2e-11 Score=99.01 Aligned_cols=170 Identities=19% Similarity=0.235 Sum_probs=115.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcc----CCeeEEE-eec-CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEE
Q 024135 6 SRTLYVGNLPGDIREREVEDLFYKY----GPIAHID-LKI-PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (272)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~----G~v~~v~-~~~-~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~ 79 (272)
.-.|-+++||.++++.|+.++|..- |.+..|. +.. +++..|-|||.|..+++|+.|+. -|...++.+.|.+.-
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~-khrq~iGqRYIElFR 239 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALR-KHRQNIGQRYIELFR 239 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHH-HHHHHHhHHHHHHHH
Confidence 4467789999999999999999732 2233333 333 78999999999999999999998 444444444443322
Q ss_pred ccCC----------CCCCCCCCCCCCCC--CCCCCCCCCccceEEEcCCCCCCCHHHHHHHHHhcC-CeeE--EEEEecC
Q 024135 80 AHGG----------RGRSSSDRHSSHSS--GRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAG-DVCF--SQVFRDG 144 (272)
Q Consensus 80 ~~~~----------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G-~i~~--~~~~~~~ 144 (272)
+... .............. .....+......+|-+.+||+..+.++|.++|..|. .|.. +++..+.
T Consensus 240 STaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~ 319 (508)
T KOG1365|consen 240 STAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG 319 (508)
T ss_pred HhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC
Confidence 2100 00000000000111 111223344567899999999999999999999987 4444 7777664
Q ss_pred ---CCCeEEEEeCCHHHHHHHHHHhcCccccccee
Q 024135 145 ---SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (272)
Q Consensus 145 ---~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~ 176 (272)
..|-|||+|.+.++|..|+.+.++....++.+
T Consensus 320 qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYi 354 (508)
T KOG1365|consen 320 QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYI 354 (508)
T ss_pred CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceE
Confidence 34689999999999999999988888766443
No 97
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.26 E-value=5.5e-11 Score=79.00 Aligned_cols=77 Identities=18% Similarity=0.215 Sum_probs=67.4
Q ss_pred CCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecC-CCCeEEEEeCCHHHHHHHHHHhcCcccccceeeeEEEe
Q 024135 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG-SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 182 (272)
Q Consensus 104 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~-~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~ 182 (272)
++.-+..|||.|||..+|.+++-++|.+||.|..|.+-..+ ..|.|||.|++..+|..|+++|.|..+.+ ..+.|
T Consensus 14 ppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~----ryl~v 89 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDN----RYLVV 89 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCC----ceEEE
Confidence 34456789999999999999999999999999999998765 45799999999999999999999999999 55555
Q ss_pred ec
Q 024135 183 RE 184 (272)
Q Consensus 183 ~~ 184 (272)
-.
T Consensus 90 ly 91 (124)
T KOG0114|consen 90 LY 91 (124)
T ss_pred Ee
Confidence 43
No 98
>smart00362 RRM_2 RNA recognition motif.
Probab=99.26 E-value=7.8e-11 Score=75.90 Aligned_cols=66 Identities=21% Similarity=0.365 Sum_probs=60.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecC--CCCeEEEEeCCHHHHHHHHHHhcCcccccce
Q 024135 110 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG--SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (272)
Q Consensus 110 ~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~--~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~ 175 (272)
+|+|.|||..+++++|.++|.+||.+..+.+..+. ..++|||+|.+.++|..|+..+++..+.|..
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~ 68 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRP 68 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEE
Confidence 48999999999999999999999999999888765 4469999999999999999999999998843
No 99
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.25 E-value=6.4e-11 Score=94.52 Aligned_cols=72 Identities=19% Similarity=0.208 Sum_probs=65.5
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecC--CCCeEEEEeCCHHHHHHHHHHhcCccccccee
Q 024135 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG--SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (272)
Q Consensus 105 ~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~--~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~ 176 (272)
......|+|.|+|....+.||..+|.+||.|.+|.|+.+. .+|||||+|++.++|++|.++|||..+.|+++
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkI 166 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKI 166 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEE
Confidence 3456789999999999999999999999999999999886 45799999999999999999999999999443
No 100
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.24 E-value=6.8e-12 Score=111.92 Aligned_cols=155 Identities=22% Similarity=0.329 Sum_probs=130.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecC--CCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEcc
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP--PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~--~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (272)
..+.|||+|||...+++.+|+..|..+|.|..|.|..+ +....||||.|.+...+-.|...+.+..|..-.+.+.+..
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~ 449 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQ 449 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccccc
Confidence 56899999999999999999999999999999999544 3445699999999999999999999888765555554432
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHH
Q 024135 82 GGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKH 161 (272)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~ 161 (272)
. .....+.++|++|+..+....|...|..||.|..|.+-.... |++|.|++...|+.
T Consensus 450 ~---------------------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq~--yayi~yes~~~aq~ 506 (975)
T KOG0112|consen 450 P---------------------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQP--YAYIQYESPPAAQA 506 (975)
T ss_pred c---------------------ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCCc--ceeeecccCccchh
Confidence 1 223457899999999999999999999999999988766554 99999999999999
Q ss_pred HHHHhcCcccccceeeeEEEee
Q 024135 162 AIKKLDDSEFRNAFSRAYVRVR 183 (272)
Q Consensus 162 a~~~l~~~~~~g~~~~~~~~~~ 183 (272)
|+..|.|..++|.... +.|+
T Consensus 507 a~~~~rgap~G~P~~r--~rvd 526 (975)
T KOG0112|consen 507 ATHDMRGAPLGGPPRR--LRVD 526 (975)
T ss_pred hHHHHhcCcCCCCCcc--cccc
Confidence 9999999999986544 4444
No 101
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=2.8e-11 Score=97.49 Aligned_cols=74 Identities=19% Similarity=0.263 Sum_probs=68.2
Q ss_pred CCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCC----eEEEEeCCHHHHHHHHHHhcCcccccceee
Q 024135 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGT----TGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (272)
Q Consensus 104 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~----~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~ 177 (272)
..++...|||+.|.+-++.++|.-+|+.||.|..|.|+.+..+| ||||+|++.+++++|.-+|++..|+...++
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIH 312 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIH 312 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEE
Confidence 34578899999999999999999999999999999999998776 999999999999999999999999995443
No 102
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.21 E-value=5.4e-11 Score=90.89 Aligned_cols=73 Identities=15% Similarity=0.233 Sum_probs=61.4
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CCeEEEEeCCHHHHHHHHHHhcCcccccceeeeEE
Q 024135 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (272)
Q Consensus 107 ~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~ 180 (272)
.-++|||+||++.+..+.|..+|.+||+|+.+.|+.|+. +|||||+|.+.+.|.+|++.. +-.|+|++....+
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp-~piIdGR~aNcnl 87 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP-NPIIDGRKANCNL 87 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC-CCcccccccccch
Confidence 347899999999999999999999999999999998864 469999999999999999954 3456775544443
No 103
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.17 E-value=4.4e-11 Score=92.88 Aligned_cols=82 Identities=22% Similarity=0.482 Sum_probs=74.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEE
Q 024135 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (272)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~ 79 (272)
+-+-|+|||.-||....+.+|.+.|-.||.|++.++.. +.++++|+||.|.++.+|+.||..|||..|+=+.|+|.+
T Consensus 282 GPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQL 361 (371)
T KOG0146|consen 282 GPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQL 361 (371)
T ss_pred CCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhh
Confidence 34679999999999999999999999999999998844 578999999999999999999999999999999999988
Q ss_pred ccCCC
Q 024135 80 AHGGR 84 (272)
Q Consensus 80 ~~~~~ 84 (272)
..+..
T Consensus 362 KRPkd 366 (371)
T KOG0146|consen 362 KRPKD 366 (371)
T ss_pred cCccc
Confidence 76543
No 104
>smart00360 RRM RNA recognition motif.
Probab=99.15 E-value=3.2e-10 Score=72.70 Aligned_cols=63 Identities=19% Similarity=0.374 Sum_probs=57.4
Q ss_pred EcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CCeEEEEeCCHHHHHHHHHHhcCcccccce
Q 024135 113 VTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (272)
Q Consensus 113 v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~ 175 (272)
|+|||..+++++|.++|.+||.|..+.+..+.. .++|||+|.+.++|..|+..+++..+.|+.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~ 67 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRP 67 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcE
Confidence 578999999999999999999999999988765 569999999999999999999999998843
No 105
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.14 E-value=2.2e-10 Score=92.23 Aligned_cols=77 Identities=31% Similarity=0.576 Sum_probs=67.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHh-cCCcccCCceEEEEEcc
Q 024135 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRG-RDGYDFDGHRLRVELAH 81 (272)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~-l~g~~~~g~~i~v~~~~ 81 (272)
+....||||+||...+++.+|+++|.+||+|..+.+.. .+++|||+|.+.++|+.|... +|...|.|..|+|.|..
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~---~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~ 301 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILP---RKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGR 301 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeec---ccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCC
Confidence 45678999999999999999999999999999999862 357999999999999987765 56677899999999998
Q ss_pred C
Q 024135 82 G 82 (272)
Q Consensus 82 ~ 82 (272)
+
T Consensus 302 ~ 302 (377)
T KOG0153|consen 302 P 302 (377)
T ss_pred C
Confidence 7
No 106
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.13 E-value=6.3e-10 Score=71.97 Aligned_cols=66 Identities=21% Similarity=0.396 Sum_probs=60.6
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC---CCeEEEEeCCHHHHHHHHHHhcCcccccce
Q 024135 110 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (272)
Q Consensus 110 ~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~ 175 (272)
+|+|+|||..+++++|.++|..+|.|..+.+..++. .++|||+|.+.++|..|++.+++..+.|..
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~ 69 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRP 69 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 478999999999999999999999999999998764 579999999999999999999999988844
No 107
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.10 E-value=2.1e-10 Score=84.28 Aligned_cols=79 Identities=22% Similarity=0.383 Sum_probs=69.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEE----EeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEcc
Q 024135 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHI----DLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (272)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v----~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (272)
+..|||+||.+.+++..|..+|+.||.+... ....++.+++||||.|.+.+.+.+|+..+||..+..++|.|.++.
T Consensus 96 ganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~ 175 (203)
T KOG0131|consen 96 GANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAF 175 (203)
T ss_pred cccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEE
Confidence 4679999999999999999999999987652 223457889999999999999999999999999999999999997
Q ss_pred CCC
Q 024135 82 GGR 84 (272)
Q Consensus 82 ~~~ 84 (272)
...
T Consensus 176 k~~ 178 (203)
T KOG0131|consen 176 KKD 178 (203)
T ss_pred ecC
Confidence 544
No 108
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.07 E-value=6.1e-10 Score=83.57 Aligned_cols=79 Identities=28% Similarity=0.444 Sum_probs=71.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcc-CCeeEEEe---ecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEc
Q 024135 5 ASRTLYVGNLPGDIREREVEDLFYKY-GPIAHIDL---KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (272)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~-G~v~~v~~---~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (272)
....++|.-||.-+-+.+|..+|.++ |.|..+.+ ..+|.++|||||+|++++.|.-|-..||+..|.|+.|.|.+.
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 45678999999999999999999988 78888888 458999999999999999999999999999999999999998
Q ss_pred cCC
Q 024135 81 HGG 83 (272)
Q Consensus 81 ~~~ 83 (272)
.+.
T Consensus 128 ppe 130 (214)
T KOG4208|consen 128 PPE 130 (214)
T ss_pred Cch
Confidence 654
No 109
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.06 E-value=9.2e-10 Score=94.07 Aligned_cols=80 Identities=26% Similarity=0.491 Sum_probs=72.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEccC
Q 024135 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (272)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~ 82 (272)
.++|||.+|+..+-..+|++||++||.|+-.+++. ++..++|+||++.+.++|.+||..|+-+.|.|+-|.|+.+++
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 56899999999999999999999999999999854 355679999999999999999999999999999999999986
Q ss_pred CCC
Q 024135 83 GRG 85 (272)
Q Consensus 83 ~~~ 85 (272)
...
T Consensus 485 Ep~ 487 (940)
T KOG4661|consen 485 EPG 487 (940)
T ss_pred Ccc
Confidence 653
No 110
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.03 E-value=1.8e-09 Score=66.23 Aligned_cols=52 Identities=19% Similarity=0.381 Sum_probs=45.7
Q ss_pred HHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCcccccceee
Q 024135 125 LKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (272)
Q Consensus 125 l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~ 177 (272)
|.++|++||.|..+.+..+. +++|||+|.+.++|..|+..||+..+.|+.+.
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~ 52 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLK 52 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-TTEEEEEESSHHHHHHHHHHHTTSEETTEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 67899999999999998776 57999999999999999999999999995433
No 111
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.99 E-value=2.3e-09 Score=84.37 Aligned_cols=80 Identities=26% Similarity=0.505 Sum_probs=72.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec--CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEccC
Q 024135 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (272)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~ 82 (272)
.+.+|+|.|||..|+++||++||..||.++.+.+.+ .+.+.|.|-|.|...++|..||..+||..+.|..+++.....
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISS 161 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecC
Confidence 457899999999999999999999999988888855 578899999999999999999999999999999999987764
Q ss_pred CC
Q 024135 83 GR 84 (272)
Q Consensus 83 ~~ 84 (272)
+.
T Consensus 162 ~~ 163 (243)
T KOG0533|consen 162 PS 163 (243)
T ss_pred cc
Confidence 43
No 112
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.98 E-value=4.7e-09 Score=70.81 Aligned_cols=75 Identities=20% Similarity=0.317 Sum_probs=64.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcc--CCeeEEEeecC---CCCCceEEEEecChHHHHHHHHhcCCcccC----CceEEE
Q 024135 7 RTLYVGNLPGDIREREVEDLFYKY--GPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFD----GHRLRV 77 (272)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~--G~v~~v~~~~~---~~~~g~afV~f~~~~~a~~a~~~l~g~~~~----g~~i~v 77 (272)
+||.|.|||...|.++|.+++... |...-+.|+.+ ..+.|||||.|.+++.|......++|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 799999999999999999998743 67777777554 567899999999999999999999998885 566788
Q ss_pred EEcc
Q 024135 78 ELAH 81 (272)
Q Consensus 78 ~~~~ 81 (272)
.||.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 7775
No 113
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.96 E-value=7e-11 Score=86.62 Aligned_cols=69 Identities=14% Similarity=0.187 Sum_probs=63.6
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----CeEEEEeCCHHHHHHHHHHhcCccccccee
Q 024135 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (272)
Q Consensus 108 ~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~ 176 (272)
..-|||+|||..+|+.+|.-+|++||+|+.|.++.|..+ ||||+-|++.....-|+..|||..|.|+.+
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRti 107 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTI 107 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeE
Confidence 467999999999999999999999999999999999654 599999999999999999999999999443
No 114
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=7.3e-10 Score=83.76 Aligned_cols=71 Identities=23% Similarity=0.260 Sum_probs=64.1
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecC----CCCeEEEEeCCHHHHHHHHHHhcCcccccceeee
Q 024135 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (272)
Q Consensus 108 ~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~ 178 (272)
..+|||++|...+++..|...|-+||.|..|.+..|. ..+||||+|+-.++|..|+..||+.++.|+++++
T Consensus 10 KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirV 84 (298)
T KOG0111|consen 10 KRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRV 84 (298)
T ss_pred ceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEE
Confidence 4699999999999999999999999999999998773 4579999999999999999999999999954443
No 115
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.93 E-value=3.8e-09 Score=92.50 Aligned_cols=77 Identities=27% Similarity=0.468 Sum_probs=70.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecC------CCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEE
Q 024135 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP------PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (272)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~------~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~ 78 (272)
-+++|||+||++.++++.|...|+.||+|..|++++. .....+|||.|-+-.+|+.|+..|+|..+.+..+++.
T Consensus 173 ~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~g 252 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLG 252 (877)
T ss_pred cccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeec
Confidence 4678999999999999999999999999999999663 2446799999999999999999999999999999999
Q ss_pred Ecc
Q 024135 79 LAH 81 (272)
Q Consensus 79 ~~~ 81 (272)
|++
T Consensus 253 Wgk 255 (877)
T KOG0151|consen 253 WGK 255 (877)
T ss_pred ccc
Confidence 986
No 116
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.92 E-value=5.3e-08 Score=82.23 Aligned_cols=167 Identities=21% Similarity=0.269 Sum_probs=110.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeE-EEe--ecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEcc
Q 024135 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAH-IDL--KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (272)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~-v~~--~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (272)
...+|-+.+||+.||++||.+||+..-.|.. |.| ...+.+.|-|||+|++++.|+.|+. -|...|.-+-|.|..+.
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG-RHRENIGHRYIEVFRSS 180 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHH-HHHHhhccceEEeehhH
Confidence 4568999999999999999999997755544 323 2346788999999999999999999 56666777777776543
Q ss_pred CC---------CC----CCCCCC-----C-------------CCC----C-------------C---------CCC----
Q 024135 82 GG---------RG----RSSSDR-----H-------------SSH----S-------------S---------GRG---- 100 (272)
Q Consensus 82 ~~---------~~----~~~~~~-----~-------------~~~----~-------------~---------~~~---- 100 (272)
.. .. +.+... . ... . . ...
T Consensus 181 ~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~~ 260 (510)
T KOG4211|consen 181 RAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNYP 260 (510)
T ss_pred HHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccccccccccccccccccC
Confidence 00 00 000000 0 000 0 0 000
Q ss_pred -------------CCCCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecC---CCCeEEEEeCCHHHHHHHHH
Q 024135 101 -------------RGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG---SGTTGIVDYTNYDDMKHAIK 164 (272)
Q Consensus 101 -------------~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~---~~~~~fv~f~~~~~a~~a~~ 164 (272)
...-......+...+||...++.++..+|...-.+ .|++...+ .++-|+|+|.+.++|..|+.
T Consensus 261 ~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig~dGr~TGEAdveF~t~edav~Ams 339 (510)
T KOG4211|consen 261 VSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIGPDGRATGEADVEFATGEDAVGAMG 339 (510)
T ss_pred CCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeCCCCccCCcceeecccchhhHhhhc
Confidence 00000122567778999999999999999875544 55555443 34579999999999999998
Q ss_pred HhcCcccccc
Q 024135 165 KLDDSEFRNA 174 (272)
Q Consensus 165 ~l~~~~~~g~ 174 (272)
-++..+...
T Consensus 340 -kd~anm~hr 348 (510)
T KOG4211|consen 340 -KDGANMGHR 348 (510)
T ss_pred -cCCcccCcc
Confidence 455555543
No 117
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.91 E-value=1.1e-09 Score=93.53 Aligned_cols=165 Identities=19% Similarity=0.180 Sum_probs=99.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEccC
Q 024135 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (272)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~ 82 (272)
+-++.+|+|-|||..|++++|..+|+.||+|..|.. +....+.+||+|.|..+|+.|+..|++..+.|+.|+.....-
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~--t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~~~~ 149 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE--TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPGGAR 149 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc--ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCCccc
Confidence 457889999999999999999999999999999654 445678999999999999999999999999999988211100
Q ss_pred CCCCCCCCC--CCCCCCCCCCCCCCC-ccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHH
Q 024135 83 GRGRSSSDR--HSSHSSGRGRGVSRR-SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDM 159 (272)
Q Consensus 83 ~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a 159 (272)
......... -......-...++.. +...++ +.|++.....-++.++..+|.+.. ....... .--|+.|.+..++
T Consensus 150 ~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~-g~l~P~~s~~~~~~~~~~~~~~~~-~~~~~~~-hq~~~~~~~~~s~ 226 (549)
T KOG4660|consen 150 RAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLF-GMLSPTRSSILLEHISSVDGSSPG-RETPLLN-HQRFVEFADNRSY 226 (549)
T ss_pred ccchhcccchhhhhccchhhcCCCCCCcCCcce-eeeccchhhhhhhcchhccCcccc-ccccchh-hhhhhhhccccch
Confidence 000000000 000000000000000 112222 238888777667777777776654 1111100 1346677777776
Q ss_pred HHHHHHhcCccccc
Q 024135 160 KHAIKKLDDSEFRN 173 (272)
Q Consensus 160 ~~a~~~l~~~~~~g 173 (272)
..+...+ |..+.+
T Consensus 227 a~~~~~~-G~~~s~ 239 (549)
T KOG4660|consen 227 AFSEPRG-GFLISN 239 (549)
T ss_pred hhcccCC-ceecCC
Confidence 4444422 444443
No 118
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.89 E-value=1.9e-10 Score=102.42 Aligned_cols=136 Identities=24% Similarity=0.336 Sum_probs=112.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEee---cCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEcc
Q 024135 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLK---IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (272)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~---~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (272)
..+++||.||++.+.+.+|...|..+|.+..+.+. ..++.+|+||++|..++++.+|+....+. +.|+
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~-~~gK-------- 736 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSC-FFGK-------- 736 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhh-hhhh--------
Confidence 34678999999999999999999999987777663 35788999999999999999999944444 4341
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEec---CCCCeEEEEeCCHHH
Q 024135 82 GGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD---GSGTTGIVDYTNYDD 158 (272)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~---~~~~~~fv~f~~~~~ 158 (272)
..++|.|+|...|.++|+.++..+|.+....++.. .++|.|+|.|.+..+
T Consensus 737 ---------------------------~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~ 789 (881)
T KOG0128|consen 737 ---------------------------ISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEAD 789 (881)
T ss_pred ---------------------------hhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcch
Confidence 36789999999999999999999999888765544 456799999999999
Q ss_pred HHHHHHHhcCccccccee
Q 024135 159 MKHAIKKLDDSEFRNAFS 176 (272)
Q Consensus 159 a~~a~~~l~~~~~~g~~~ 176 (272)
+..++...+...+.-...
T Consensus 790 ~s~~~~s~d~~~~rE~~~ 807 (881)
T KOG0128|consen 790 ASRKVASVDVAGKRENNG 807 (881)
T ss_pred hhhhcccchhhhhhhcCc
Confidence 999998887776665333
No 119
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.89 E-value=4.8e-09 Score=89.69 Aligned_cols=76 Identities=24% Similarity=0.346 Sum_probs=68.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----CeEEEEeCCHHHHHHHHHHhcCcccccceeeeEEEeec
Q 024135 109 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVRE 184 (272)
Q Consensus 109 ~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~~~ 184 (272)
..+||+|+|+++++++|.++|...|.|..+.++.|..+ ||||++|.+.++|..|++.|||.++.| +.+.+.+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~g----r~l~v~~ 94 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNG----RKLRVNY 94 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCC----ceEEeec
Confidence 79999999999999999999999999999999988654 599999999999999999999999999 6666665
Q ss_pred cccC
Q 024135 185 YDHR 188 (272)
Q Consensus 185 ~~~~ 188 (272)
....
T Consensus 95 ~~~~ 98 (435)
T KOG0108|consen 95 ASNR 98 (435)
T ss_pred cccc
Confidence 4443
No 120
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.87 E-value=1.4e-08 Score=83.42 Aligned_cols=69 Identities=22% Similarity=0.359 Sum_probs=63.3
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecC----CCCeEEEEeCCHHHHHHHHHHhcCccccccee
Q 024135 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (272)
Q Consensus 108 ~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~ 176 (272)
..+|||+|||..+++++|.++|.+||.+..+.+..+. ..|||||+|.+.++|..|+..+++..+.|..+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~ 187 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPL 187 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCcee
Confidence 5899999999999999999999999999999888774 45699999999999999999999999999443
No 121
>smart00361 RRM_1 RNA recognition motif.
Probab=98.86 E-value=1.3e-08 Score=65.42 Aligned_cols=55 Identities=16% Similarity=0.237 Sum_probs=45.8
Q ss_pred HHHHHHHHH----hcCCeeEEE-EEecC------CCCeEEEEeCCHHHHHHHHHHhcCccccccee
Q 024135 122 WQDLKDHMR----RAGDVCFSQ-VFRDG------SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (272)
Q Consensus 122 ~~~l~~~f~----~~G~i~~~~-~~~~~------~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~ 176 (272)
+++|.++|. +||.|..+. +..+. ..|||||+|.+.++|..|+..|||..+.|+.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l 67 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTV 67 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 567888888 999999885 44332 35799999999999999999999999999543
No 122
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.86 E-value=6.2e-09 Score=88.50 Aligned_cols=74 Identities=32% Similarity=0.596 Sum_probs=64.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEee-c--CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEcc
Q 024135 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLK-I--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (272)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~-~--~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (272)
.+|||+|||.+++.++|.++|..||+|+...|. . .+...+||||+|.+.++++.|+. -+-..++++.|.|+--+
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~-Asp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIE-ASPLEIGGRKLNVEEKR 365 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhh-cCccccCCeeEEEEecc
Confidence 459999999999999999999999999998883 2 24445999999999999999999 56888899999998654
No 123
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.85 E-value=5.9e-09 Score=85.07 Aligned_cols=169 Identities=21% Similarity=0.255 Sum_probs=124.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEe---ecCCCCCceEEEEecChHHHHHHHHhcCC-cccCCceEEEEEc
Q 024135 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDL---KIPPRPPGYAFVEFEEARDAEDAIRGRDG-YDFDGHRLRVELA 80 (272)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~---~~~~~~~g~afV~f~~~~~a~~a~~~l~g-~~~~g~~i~v~~~ 80 (272)
..+++|++++..++.+.++..++..+|.+....+ .....+++++++.|...+.+..|+. +.+ ..+.+..+...+.
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~-~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALE-ESGSKVLDGNKGEKDLN 165 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHH-hhhccccccccccCccc
Confidence 4678999999999999999999999997776666 2346778999999999999999999 555 4555555554443
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCccceEE-EcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----CeEEEEeCC
Q 024135 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVL-VTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTN 155 (272)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~----~~~fv~f~~ 155 (272)
........ ............+++ |++|+..++.++|..+|..+|.|..+.+...... +||+|.|..
T Consensus 166 ~~~~~~~~---------n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~ 236 (285)
T KOG4210|consen 166 TRRGLRPK---------NKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSA 236 (285)
T ss_pred cccccccc---------chhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhh
Confidence 32221000 000011122334555 9999999999999999999999999999888765 489999999
Q ss_pred HHHHHHHHHHhcCcccccceeeeEEEeeccccC
Q 024135 156 YDDMKHAIKKLDDSEFRNAFSRAYVRVREYDHR 188 (272)
Q Consensus 156 ~~~a~~a~~~l~~~~~~g~~~~~~~~~~~~~~~ 188 (272)
...+..++.. +...+.+ ..+.+....+.
T Consensus 237 ~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~ 264 (285)
T KOG4210|consen 237 GNSKKLALND-QTRSIGG----RPLRLEEDEPR 264 (285)
T ss_pred chhHHHHhhc-ccCcccC----cccccccCCCC
Confidence 9999999987 7777777 44445444433
No 124
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.84 E-value=3.1e-08 Score=76.36 Aligned_cols=70 Identities=21% Similarity=0.308 Sum_probs=62.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCcccccceeeeEEEeeccc
Q 024135 109 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYD 186 (272)
Q Consensus 109 ~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~~~~~ 186 (272)
..+||++||+.+.+.+|+.+|..||.+..+.+... |+||+|++..+|..|+..+|+.++.|.. +.+...+
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~g----f~fv~fed~rda~Dav~~l~~~~l~~e~----~vve~~r 71 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKNG----FGFVEFEDPRDADDAVHDLDGKELCGER----LVVEHAR 71 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeecc----cceeccCchhhhhcccchhcCceeccee----eeeeccc
Confidence 46899999999999999999999999999988766 9999999999999999999999999943 5555554
No 125
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.82 E-value=6.8e-09 Score=85.05 Aligned_cols=81 Identities=26% Similarity=0.549 Sum_probs=71.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecC---CCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEccC
Q 024135 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (272)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~---~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~ 82 (272)
+.+|||++||.++++++|++.|.+||.|..+.++.+ ..+++|+||.|.+++++.+++. +..+.|.|+.+.|..|.+
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAIP 175 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeeccc
Confidence 568999999999999999999999999988888654 5778999999999999998888 889999999999998876
Q ss_pred CCCCC
Q 024135 83 GRGRS 87 (272)
Q Consensus 83 ~~~~~ 87 (272)
.....
T Consensus 176 k~~~~ 180 (311)
T KOG4205|consen 176 KEVMQ 180 (311)
T ss_pred hhhcc
Confidence 55433
No 126
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.82 E-value=3.3e-08 Score=63.44 Aligned_cols=71 Identities=27% Similarity=0.416 Sum_probs=49.7
Q ss_pred CeEEEcCCCCCCCHHH----HHHHhhccC-CeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEcc
Q 024135 7 RTLYVGNLPGDIRERE----VEDLFYKYG-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (272)
Q Consensus 7 ~~l~v~nL~~~~t~~~----l~~~F~~~G-~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (272)
..|+|.|||.+.+... |++|+..|| .|..|. .+.|+|.|.+++.|..|...|+|..+.|..|.|.|..
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~-------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS-------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE---------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe-------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence 4699999999998877 567777886 566652 4789999999999999999999999999999999986
Q ss_pred CCC
Q 024135 82 GGR 84 (272)
Q Consensus 82 ~~~ 84 (272)
...
T Consensus 76 ~~r 78 (90)
T PF11608_consen 76 KNR 78 (90)
T ss_dssp -S-
T ss_pred Ccc
Confidence 443
No 127
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.81 E-value=7.8e-09 Score=81.61 Aligned_cols=79 Identities=25% Similarity=0.411 Sum_probs=71.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEc
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (272)
.....|||+|+...+|.+++..+|+.||.|..+.|.. .++++|||||+|.+.+.+..|+. |||..|.|+.|.|.+.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLK 177 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeee
Confidence 4678999999999999999999999999998777743 46789999999999999999999 9999999999999987
Q ss_pred cCC
Q 024135 81 HGG 83 (272)
Q Consensus 81 ~~~ 83 (272)
.-.
T Consensus 178 r~~ 180 (231)
T KOG4209|consen 178 RTN 180 (231)
T ss_pred eee
Confidence 644
No 128
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.80 E-value=8.4e-10 Score=91.06 Aligned_cols=143 Identities=24% Similarity=0.414 Sum_probs=115.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcc--CCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCc-ccCCceEEEEEccCC
Q 024135 7 RTLYVGNLPGDIREREVEDLFYKY--GPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY-DFDGHRLRVELAHGG 83 (272)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~--G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~-~~~g~~i~v~~~~~~ 83 (272)
+.+||+||.+.++..+|..+|..- |--..+.+. .|||||.+.++.-|.+|++.++|. .+.|+.+.|.++...
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k-----~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~k 76 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK-----SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPK 76 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee-----cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhH
Confidence 468999999999999999999843 322333333 589999999999999999999985 478999999887644
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEE-ecCCCCeEEEEeCCHHHHHHH
Q 024135 84 RGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVF-RDGSGTTGIVDYTNYDDMKHA 162 (272)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~-~~~~~~~~fv~f~~~~~a~~a 162 (272)
.. ....+-|.|+|+...++.|..++.+||.+..|... .+......-|+|...+.+..|
T Consensus 77 kq---------------------rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~a 135 (584)
T KOG2193|consen 77 KQ---------------------RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQA 135 (584)
T ss_pred HH---------------------HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHH
Confidence 32 23457899999999999999999999999987654 333333455788899999999
Q ss_pred HHHhcCcccccce
Q 024135 163 IKKLDDSEFRNAF 175 (272)
Q Consensus 163 ~~~l~~~~~~g~~ 175 (272)
+.+++|-.+....
T Consensus 136 i~kl~g~Q~en~~ 148 (584)
T KOG2193|consen 136 IHKLNGPQLENQH 148 (584)
T ss_pred HHhhcchHhhhhh
Confidence 9999999988744
No 129
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.68 E-value=1.4e-07 Score=81.00 Aligned_cols=74 Identities=22% Similarity=0.352 Sum_probs=65.5
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----CeEEEEeCCHHHHHHHHHHhcCcccccceeeeEEEe
Q 024135 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 182 (272)
Q Consensus 107 ~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~ 182 (272)
...+|+|.+|...+...+|+.+|++||.|+-+.|+.+... .||||++.+.++|.++|+.|+..++.| .-|.|
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHG----rmISV 479 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHG----RMISV 479 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcc----eeeee
Confidence 4668999999999999999999999999999999988532 299999999999999999999999999 45555
Q ss_pred ec
Q 024135 183 RE 184 (272)
Q Consensus 183 ~~ 184 (272)
..
T Consensus 480 Ek 481 (940)
T KOG4661|consen 480 EK 481 (940)
T ss_pred ee
Confidence 53
No 130
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.65 E-value=1.3e-07 Score=76.52 Aligned_cols=80 Identities=15% Similarity=0.225 Sum_probs=66.9
Q ss_pred CCCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHH-hcCcccccceeeeEE
Q 024135 102 GVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKK-LDDSEFRNAFSRAYV 180 (272)
Q Consensus 102 ~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~-l~~~~~~g~~~~~~~ 180 (272)
++......+|||++|...+++.+|.++|.+||+|..+.++.... +|||+|.+...|+.|.++ ++...|+| .++
T Consensus 222 pPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~--CAFv~ftTR~aAE~Aae~~~n~lvI~G----~Rl 295 (377)
T KOG0153|consen 222 PPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKG--CAFVTFTTREAAEKAAEKSFNKLVING----FRL 295 (377)
T ss_pred CCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecccc--cceeeehhhHHHHHHHHhhcceeeecc----eEE
Confidence 34445678999999999999999999999999999999887654 999999999999988887 45556677 667
Q ss_pred Eeecccc
Q 024135 181 RVREYDH 187 (272)
Q Consensus 181 ~~~~~~~ 187 (272)
.+.|.++
T Consensus 296 ~i~Wg~~ 302 (377)
T KOG0153|consen 296 KIKWGRP 302 (377)
T ss_pred EEEeCCC
Confidence 7777665
No 131
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.65 E-value=9.7e-09 Score=84.09 Aligned_cols=63 Identities=17% Similarity=0.167 Sum_probs=53.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccC
Q 024135 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFD 71 (272)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~ 71 (272)
+||+|++|+..+-..++.++|..+|+|....+.- +....+|.|+|....+...|+. ++|..+.
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~as-k~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVSYAHTAS-KSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhhhhhhhc-cCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 6899999999999999999999999998777632 2334588899999999999999 7887776
No 132
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.54 E-value=8e-08 Score=73.11 Aligned_cols=66 Identities=29% Similarity=0.440 Sum_probs=56.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCccc
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDF 70 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~ 70 (272)
+.--||||.||.+++|+++|+++|+.|-....++|...+. -+.||++|++.+.|..||..|+|..|
T Consensus 208 ~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g-~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 208 RACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGG-MPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCC-cceEeecHHHHHHHHHHHHHhhccee
Confidence 4556899999999999999999999998777777754333 35899999999999999999999766
No 133
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.52 E-value=2.6e-07 Score=71.77 Aligned_cols=155 Identities=15% Similarity=0.203 Sum_probs=108.8
Q ss_pred EEEcCCCCCCCHHH-H--HHHhhccCCeeEEEeec--CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEccCC
Q 024135 9 LYVGNLPGDIRERE-V--EDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (272)
Q Consensus 9 l~v~nL~~~~t~~~-l--~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~ 83 (272)
++++++-..+..+- | ...|+.+-.+....+.. .+.-.+++|+.|.....-.++...-+++.+.-..|++ +.+.
T Consensus 99 p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~--a~gt 176 (290)
T KOG0226|consen 99 PFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRL--AAGT 176 (290)
T ss_pred ccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceee--cccc
Confidence 34555555544443 2 55666665555555533 3455789999999877777777777777776665443 3222
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecC----CCCeEEEEeCCHHHH
Q 024135 84 RGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDM 159 (272)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~----~~~~~fv~f~~~~~a 159 (272)
...... ...-...+..||-+.|..+++++.|-..|.+|-......++++. .+||+||.|.+..++
T Consensus 177 swedPs-----------l~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~ 245 (290)
T KOG0226|consen 177 SWEDPS-----------LAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADY 245 (290)
T ss_pred ccCCcc-----------cccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHH
Confidence 111110 01122346799999999999999999999999998888888775 456999999999999
Q ss_pred HHHHHHhcCccccccee
Q 024135 160 KHAIKKLDDSEFRNAFS 176 (272)
Q Consensus 160 ~~a~~~l~~~~~~g~~~ 176 (272)
..|+..|+|..++.+.+
T Consensus 246 ~rAmrem~gkyVgsrpi 262 (290)
T KOG0226|consen 246 VRAMREMNGKYVGSRPI 262 (290)
T ss_pred HHHHHhhcccccccchh
Confidence 99999999999998443
No 134
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.51 E-value=5.1e-07 Score=71.29 Aligned_cols=72 Identities=25% Similarity=0.296 Sum_probs=65.2
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC---CeEEEEeCCHHHHHHHHHHhcCcccccceeeeE
Q 024135 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG---TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (272)
Q Consensus 108 ~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~---~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~ 179 (272)
...|+|.||+..++.++|+++|.+||.+..+.+..++.+ |.|-|.|...++|..|++++++..++|......
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~ 157 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIE 157 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeE
Confidence 478999999999999999999999999999999888766 689999999999999999999999999664433
No 135
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.50 E-value=7.7e-07 Score=79.21 Aligned_cols=72 Identities=15% Similarity=0.244 Sum_probs=63.5
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCcccccceeeeE
Q 024135 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (272)
Q Consensus 106 ~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~ 179 (272)
....||||++|+..+++.+|.++|..||+|..|.+... .++|||.+....+|.+|+.+|++..+.++.++..
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~--R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~ 490 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP--RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIA 490 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC--CceeEEEEeehhHHHHHHHHHhcccccceeeEEe
Confidence 36789999999999999999999999999999888655 4599999999999999999999999998444333
No 136
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=98.50 E-value=1.5e-07 Score=73.36 Aligned_cols=61 Identities=25% Similarity=0.432 Sum_probs=52.7
Q ss_pred HHHHHHhh-ccCCeeEEEee--cCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEcc
Q 024135 21 REVEDLFY-KYGPIAHIDLK--IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (272)
Q Consensus 21 ~~l~~~F~-~~G~v~~v~~~--~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (272)
++|...|+ +||+|..+.+- ...+..|.+||.|..+++|++|+..|||.+|.|++|.+++..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 45566666 99999999873 345778999999999999999999999999999999999874
No 137
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.47 E-value=9.9e-07 Score=67.62 Aligned_cols=70 Identities=13% Similarity=0.171 Sum_probs=62.1
Q ss_pred ccceEEEcCCCCCCCHHHHHH----HHHhcCCeeEEEEEec-CCCCeEEEEeCCHHHHHHHHHHhcCccccccee
Q 024135 107 SEYRVLVTGLPSSASWQDLKD----HMRRAGDVCFSQVFRD-GSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (272)
Q Consensus 107 ~~~~~~v~nl~~~~~~~~l~~----~f~~~G~i~~~~~~~~-~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~ 176 (272)
++.+|||.||++.+..++|+. +|++||.|..|..... +-.|-|||.|.+.+.|..|+.+|+|..+-|+..
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~m 82 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPM 82 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchh
Confidence 445999999999999999888 9999999999988855 456799999999999999999999999999543
No 138
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.46 E-value=2.6e-06 Score=72.78 Aligned_cols=76 Identities=18% Similarity=0.267 Sum_probs=61.7
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEe----cCCCCeEEEEeCCHHHHHHHHHHhcCcccccceeeeEEEe
Q 024135 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFR----DGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 182 (272)
Q Consensus 107 ~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~----~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~ 182 (272)
...+|||.|||.+++..+|+++|..||.|....|.. +....||||+|++.++++.|+++- -..+++ ..+.|
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~----~kl~V 361 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGG----RKLNV 361 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccCC----eeEEE
Confidence 445699999999999999999999999999866654 333369999999999999999965 677777 56666
Q ss_pred ecccc
Q 024135 183 REYDH 187 (272)
Q Consensus 183 ~~~~~ 187 (272)
++.+.
T Consensus 362 eek~~ 366 (419)
T KOG0116|consen 362 EEKRP 366 (419)
T ss_pred Eeccc
Confidence 66554
No 139
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.45 E-value=4.9e-06 Score=68.45 Aligned_cols=158 Identities=18% Similarity=0.203 Sum_probs=106.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCe---eEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEc
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPI---AHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v---~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (272)
.++..|-.++|||..++.+|-.+|.-.-.. .-+.+.-.+.-.|.|.|.|-++|.-..|++ -+...+.++.|.|.-+
T Consensus 58 ~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~Rdlalk-Rhkhh~g~ryievYka 136 (508)
T KOG1365|consen 58 DDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALK-RHKHHMGTRYIEVYKA 136 (508)
T ss_pred CcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhH-hhhhhccCCceeeecc
Confidence 456678889999999999999999744211 112223345556899999999999999998 5666777888988776
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHHh---cC-C---eeEEEEEecCCCCeEEEEe
Q 024135 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRR---AG-D---VCFSQVFRDGSGTTGIVDY 153 (272)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~---~G-~---i~~~~~~~~~~~~~~fv~f 153 (272)
.+...-.-..... .....-..+.....|-..+||.++++.++.++|.+ .+ . |..+.-..+..+|-|||.|
T Consensus 137 ~ge~f~~iagg~s---~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlf 213 (508)
T KOG1365|consen 137 TGEEFLKIAGGTS---NEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLF 213 (508)
T ss_pred CchhheEecCCcc---ccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEe
Confidence 5433211100000 00001122233446667899999999999999952 22 2 3334444456677899999
Q ss_pred CCHHHHHHHHHH
Q 024135 154 TNYDDMKHAIKK 165 (272)
Q Consensus 154 ~~~~~a~~a~~~ 165 (272)
..+++|+.|+.+
T Consensus 214 a~ee~aq~aL~k 225 (508)
T KOG1365|consen 214 ACEEDAQFALRK 225 (508)
T ss_pred cCHHHHHHHHHH
Confidence 999999999985
No 140
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.45 E-value=1.1e-06 Score=77.42 Aligned_cols=173 Identities=12% Similarity=0.004 Sum_probs=117.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEcc
Q 024135 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (272)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (272)
..+.+-+.+++.+....|++++|... .|..+.|.+ .+...|.++|+|..+.++++|+. -|...+-.+.+.+..+.
T Consensus 310 d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~-rn~~~~~~R~~q~~P~g 387 (944)
T KOG4307|consen 310 DKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFT-RNPSDDVNRPFQTGPPG 387 (944)
T ss_pred hhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHh-cCchhhhhcceeecCCC
Confidence 34556677899999999999999633 344444422 23337899999999999999998 67777778888887655
Q ss_pred CCCCCCCCCCCC--------------------CCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeE-EEE
Q 024135 82 GGRGRSSSDRHS--------------------SHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCF-SQV 140 (272)
Q Consensus 82 ~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~-~~~ 140 (272)
+........... ....+.....+.....+|||..||..++..++.+.|...-.|++ |.+
T Consensus 388 ~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~l 467 (944)
T KOG4307|consen 388 NLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIEL 467 (944)
T ss_pred ccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEe
Confidence 332111110000 00000011123345789999999999999999999988777766 666
Q ss_pred EecC---CCCeEEEEeCCHHHHHHHHHHhcCcccccceeeeEEEee
Q 024135 141 FRDG---SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVR 183 (272)
Q Consensus 141 ~~~~---~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~~ 183 (272)
...+ ..+-|||.|..++++..|...-+..+++. ..|+|+
T Consensus 468 t~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~----r~irv~ 509 (944)
T KOG4307|consen 468 TRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGH----RIIRVD 509 (944)
T ss_pred ccCCcccccchhhheeccccccchhhhcccccccCc----eEEEee
Confidence 5444 34589999999999888888666666665 445544
No 141
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.41 E-value=3.3e-07 Score=71.16 Aligned_cols=74 Identities=19% Similarity=0.421 Sum_probs=65.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEe---ecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEc
Q 024135 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDL---KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (272)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~---~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (272)
-.||.|.|...++.+.|-..|.+|-....-++ ..+++++||+||.|.+++++..|+.+|||..++.++|++.-+
T Consensus 191 fRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 191 FRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred ceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 46999999999999999999999876555555 457899999999999999999999999999999999987544
No 142
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.35 E-value=1.3e-06 Score=60.40 Aligned_cols=70 Identities=17% Similarity=0.347 Sum_probs=43.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCc-----ccCCceEEEEE
Q 024135 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY-----DFDGHRLRVEL 79 (272)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~-----~~~g~~i~v~~ 79 (272)
+.|+|.+++..++-++|+++|+.||.|..|.+... -..|||-|.++++|+.|+..+... .+.+..+.+..
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G---~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~v 76 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG---DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEV 76 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT----SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE-
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC---CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEE
Confidence 57899999999999999999999999999988632 348999999999999998876533 45555555543
No 143
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.31 E-value=3.6e-06 Score=63.60 Aligned_cols=76 Identities=16% Similarity=0.164 Sum_probs=62.4
Q ss_pred CCCCccceEEEcCCCCCCCHHHHHHHHHhc-CCeeEEEEEecC----CCCeEEEEeCCHHHHHHHHHHhcCcccccceee
Q 024135 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRA-GDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (272)
Q Consensus 103 ~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~-G~i~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~ 177 (272)
+.......++|..+|..+.+.++..+|.++ |.+....+..+. .+|||||+|++.+.|+-|.+.||++.+.++...
T Consensus 44 p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~ 123 (214)
T KOG4208|consen 44 PEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLE 123 (214)
T ss_pred CccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheee
Confidence 334455688999999999999999999998 566666665664 446999999999999999999999999996654
Q ss_pred e
Q 024135 178 A 178 (272)
Q Consensus 178 ~ 178 (272)
+
T Consensus 124 c 124 (214)
T KOG4208|consen 124 C 124 (214)
T ss_pred e
Confidence 4
No 144
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.26 E-value=5.2e-07 Score=68.57 Aligned_cols=72 Identities=15% Similarity=0.104 Sum_probs=63.3
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC--CeEEEEeCCHHHHHHHHHHhcCccccccee
Q 024135 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG--TTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (272)
Q Consensus 105 ~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~--~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~ 176 (272)
.....+|||+|+...++++.|.++|-+.|.|..+.|..+... .||||.|++.-...-|++.+||..+.+..+
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~ 79 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEE 79 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchh
Confidence 345679999999999999999999999999999999876533 399999999999999999999998877443
No 145
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.16 E-value=2.6e-06 Score=73.32 Aligned_cols=70 Identities=19% Similarity=0.189 Sum_probs=61.2
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCccccccee
Q 024135 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (272)
Q Consensus 106 ~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~ 176 (272)
.+..+|+|.|||..++.++|..+|..||+|..+..-.. ..+.+||+|.+..+|+.|++.|++.++.|+.+
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~ 142 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-KRGIVFVEFYDVRDAERALKALNRREIAGKRI 142 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-cCceEEEEEeehHhHHHHHHHHHHHHhhhhhh
Confidence 45679999999999999999999999999999655444 34589999999999999999999999998544
No 146
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=98.13 E-value=8.1e-06 Score=48.89 Aligned_cols=53 Identities=28% Similarity=0.553 Sum_probs=43.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHH
Q 024135 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAI 62 (272)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~ 62 (272)
++.|-|.|.+++..+ +|..+|..||+|..+.+. .....+||.|.+..+|+.|+
T Consensus 1 ~~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~---~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 1 STWISVSGFPPDLAE-EVLEHFASFGEIVDIYVP---ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CcEEEEEeECchHHH-HHHHHHHhcCCEEEEEcC---CCCcEEEEEECCHHHHHhhC
Confidence 467889999988775 455589999999998876 33569999999999999985
No 147
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=98.13 E-value=1.4e-06 Score=67.79 Aligned_cols=69 Identities=17% Similarity=0.329 Sum_probs=59.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCC-----------CCC----ceEEEEecChHHHHHHHHhcCCccc
Q 024135 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPP-----------RPP----GYAFVEFEEARDAEDAIRGRDGYDF 70 (272)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~-----------~~~----g~afV~f~~~~~a~~a~~~l~g~~~ 70 (272)
+-+||+++||+.+....|+++|+.||.|-.|+|.... .+. .-|+|+|.+...|..+...|||..|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 4689999999999999999999999999999994321 111 2389999999999999999999999
Q ss_pred CCce
Q 024135 71 DGHR 74 (272)
Q Consensus 71 ~g~~ 74 (272)
+|+.
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 9874
No 148
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.13 E-value=1.1e-05 Score=71.38 Aligned_cols=69 Identities=19% Similarity=0.209 Sum_probs=62.0
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecC-------CCCeEEEEeCCHHHHHHHHHHhcCccccc
Q 024135 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG-------SGTTGIVDYTNYDDMKHAIKKLDDSEFRN 173 (272)
Q Consensus 105 ~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~-------~~~~~fv~f~~~~~a~~a~~~l~~~~~~g 173 (272)
....+++||+||++.++++.|...|..||+|..+.++... ...+|||.|.+..+|+.|++.|+|..+.+
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~ 246 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVME 246 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeee
Confidence 3457899999999999999999999999999999998653 23499999999999999999999999987
No 149
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.11 E-value=3.2e-05 Score=63.00 Aligned_cols=79 Identities=25% Similarity=0.446 Sum_probs=65.3
Q ss_pred CCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeE--------EEEEecCCC---CeEEEEeCCHHHHHHHHHHhcCccc
Q 024135 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCF--------SQVFRDGSG---TTGIVDYTNYDDMKHAIKKLDDSEF 171 (272)
Q Consensus 103 ~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~--------~~~~~~~~~---~~~fv~f~~~~~a~~a~~~l~~~~~ 171 (272)
+....++.|||.|||.++|.+++.++|++||.|.. |.+..+..+ |=|+|.|...+++.-|+..|++..+
T Consensus 129 ~~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~ 208 (382)
T KOG1548|consen 129 PEPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDEL 208 (382)
T ss_pred cccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccc
Confidence 33456778999999999999999999999997754 667766543 4699999999999999999999999
Q ss_pred ccceeeeEEEeecc
Q 024135 172 RNAFSRAYVRVREY 185 (272)
Q Consensus 172 ~g~~~~~~~~~~~~ 185 (272)
.| ..++|..+
T Consensus 209 rg----~~~rVerA 218 (382)
T KOG1548|consen 209 RG----KKLRVERA 218 (382)
T ss_pred cC----cEEEEehh
Confidence 99 55555543
No 150
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.10 E-value=7.6e-06 Score=56.64 Aligned_cols=59 Identities=22% Similarity=0.449 Sum_probs=40.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCc
Q 024135 109 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDS 169 (272)
Q Consensus 109 ~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~ 169 (272)
..|.|.+++..++.++|+++|++||.|.+|.+..... .|+|.|.+.+.|+.|+.++...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~--~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT--EGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S--EEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC--EEEEEECCcchHHHHHHHHHhc
Confidence 4688889999999999999999999999998877654 7999999999999999987655
No 151
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.06 E-value=4.5e-06 Score=68.26 Aligned_cols=79 Identities=32% Similarity=0.486 Sum_probs=68.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeE--------EEe---ecCCCCCceEEEEecChHHHHHHHHhcCCcccCCc
Q 024135 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAH--------IDL---KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGH 73 (272)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~--------v~~---~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~ 73 (272)
-+.+|||-+||..+++++|.++|.+||.|+. |.| +.++.+++-|.|.|.+...|+.|+..+++..|.+.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn 144 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN 144 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC
Confidence 4578999999999999999999999997743 222 34678899999999999999999999999999999
Q ss_pred eEEEEEccCC
Q 024135 74 RLRVELAHGG 83 (272)
Q Consensus 74 ~i~v~~~~~~ 83 (272)
.|+|.++...
T Consensus 145 ~ikvs~a~~r 154 (351)
T KOG1995|consen 145 TIKVSLAERR 154 (351)
T ss_pred Cchhhhhhhc
Confidence 9999887643
No 152
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.04 E-value=6.2e-05 Score=48.62 Aligned_cols=67 Identities=19% Similarity=0.269 Sum_probs=45.2
Q ss_pred ceEEEcCCCCCCCHHH----HHHHHHhcC-CeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCcccccceeeeEEEee
Q 024135 109 YRVLVTGLPSSASWQD----LKDHMRRAG-DVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVR 183 (272)
Q Consensus 109 ~~~~v~nl~~~~~~~~----l~~~f~~~G-~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~~ 183 (272)
+.|+|.|||.+..... |++++..|| .|..+. ++.|+|.|.+.+.|..|.+.|+|..+-| ..|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~------~~tAilrF~~~~~A~RA~KRmegEdVfG----~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS------GGTAILRFPNQEFAERAQKRMEGEDVFG----NKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE--------TT-EEEEESSHHHHHHHHHHHTT--SSS----S--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe------CCEEEEEeCCHHHHHHHHHhhccccccc----ceEEEE
Confidence 5789999999887654 566777887 565552 4589999999999999999999999999 555555
Q ss_pred cc
Q 024135 184 EY 185 (272)
Q Consensus 184 ~~ 185 (272)
..
T Consensus 73 ~~ 74 (90)
T PF11608_consen 73 FS 74 (90)
T ss_dssp SS
T ss_pred Ec
Confidence 43
No 153
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.98 E-value=1e-05 Score=67.56 Aligned_cols=64 Identities=30% Similarity=0.348 Sum_probs=55.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCC----------------CCCceEEEEecChHHHHHHHHhcCCc
Q 024135 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPP----------------RPPGYAFVEFEEARDAEDAIRGRDGY 68 (272)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~----------------~~~g~afV~f~~~~~a~~a~~~l~g~ 68 (272)
+++||.+.|||.+-..+.|.+||+.+|.|+.|.|...+ ..+-+|+|+|.+.+.|.+|.+.||..
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 68899999999999999999999999999999995431 12568999999999999999977643
No 154
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.98 E-value=0.00011 Score=49.65 Aligned_cols=66 Identities=15% Similarity=0.160 Sum_probs=55.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhc--CCeeEEEEEecC----CCCeEEEEeCCHHHHHHHHHHhcCcccccc
Q 024135 109 YRVLVTGLPSSASWQDLKDHMRRA--GDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNA 174 (272)
Q Consensus 109 ~~~~v~nl~~~~~~~~l~~~f~~~--G~i~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~ 174 (272)
++|.|.|+|...+.++|.+++... |....+.+..|- +.|||||.|.+++.|..-.+.++|..+..-
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~ 73 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNF 73 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccC
Confidence 689999999999999999998653 566666666664 347999999999999999999999998753
No 155
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.97 E-value=7.2e-06 Score=71.12 Aligned_cols=75 Identities=12% Similarity=0.228 Sum_probs=64.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhh-ccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCccc---CCceEEEEE
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFY-KYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDF---DGHRLRVEL 79 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~-~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~---~g~~i~v~~ 79 (272)
.++++|||.||-.-.|..+|+.|++ .+|.|.++.|- +-+..|||.|.+.++|.+....|||..| +++.|.+.|
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmD---kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf 518 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMD---KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADF 518 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHHHHH---HhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeee
Confidence 5789999999999999999999999 77788877441 2256899999999999999999999888 467788888
Q ss_pred cc
Q 024135 80 AH 81 (272)
Q Consensus 80 ~~ 81 (272)
..
T Consensus 519 ~~ 520 (718)
T KOG2416|consen 519 VR 520 (718)
T ss_pred cc
Confidence 75
No 156
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.94 E-value=3.5e-05 Score=62.48 Aligned_cols=76 Identities=24% Similarity=0.440 Sum_probs=61.7
Q ss_pred CCeEEEcCCCCCCCHHHH------HHHhhccCCeeEEEeec-CC--C-CCc--eEEEEecChHHHHHHHHhcCCcccCCc
Q 024135 6 SRTLYVGNLPGDIREREV------EDLFYKYGPIAHIDLKI-PP--R-PPG--YAFVEFEEARDAEDAIRGRDGYDFDGH 73 (272)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l------~~~F~~~G~v~~v~~~~-~~--~-~~g--~afV~f~~~~~a~~a~~~l~g~~~~g~ 73 (272)
.+-|||-+||+.+..+++ .++|++||.|..|.+.. +. . ..+ -.||.|...++|..||...+|..++|+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 356899999999877773 57999999999998843 21 1 112 249999999999999999999999999
Q ss_pred eEEEEEcc
Q 024135 74 RLRVELAH 81 (272)
Q Consensus 74 ~i~v~~~~ 81 (272)
.|+..|..
T Consensus 194 ~lkatYGT 201 (480)
T COG5175 194 VLKATYGT 201 (480)
T ss_pred eEeeecCc
Confidence 99998754
No 157
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.94 E-value=1.4e-05 Score=65.48 Aligned_cols=81 Identities=23% Similarity=0.417 Sum_probs=70.8
Q ss_pred CCCCCeEE-EcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEE
Q 024135 3 SRASRTLY-VGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (272)
Q Consensus 3 ~~~~~~l~-v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~ 78 (272)
..++.++| |+||+.+++.++|..+|..+|.|..+.+.. ++..+|||||.|.....+..++.. +...+.+.++.+.
T Consensus 181 ~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 259 (285)
T KOG4210|consen 181 SGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLE 259 (285)
T ss_pred cCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccc
Confidence 44566777 999999999999999999999999999943 577899999999999999999997 8899999999998
Q ss_pred EccCCC
Q 024135 79 LAHGGR 84 (272)
Q Consensus 79 ~~~~~~ 84 (272)
......
T Consensus 260 ~~~~~~ 265 (285)
T KOG4210|consen 260 EDEPRP 265 (285)
T ss_pred cCCCCc
Confidence 876543
No 158
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.93 E-value=6.1e-05 Score=51.31 Aligned_cols=74 Identities=18% Similarity=0.268 Sum_probs=53.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEee----------cCCCCCceEEEEecChHHHHHHHHhcCCcccCCce
Q 024135 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLK----------IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHR 74 (272)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~----------~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~ 74 (272)
..+.|.|-+.|+. ....|.++|++||+|.+..-. ......+...|.|.++.+|.+||. .||..|.|..
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 4567889999998 557888999999999877510 012335689999999999999999 8999999865
Q ss_pred E-EEEEc
Q 024135 75 L-RVELA 80 (272)
Q Consensus 75 i-~v~~~ 80 (272)
+ -|.+.
T Consensus 83 mvGV~~~ 89 (100)
T PF05172_consen 83 MVGVKPC 89 (100)
T ss_dssp EEEEEE-
T ss_pred EEEEEEc
Confidence 5 46555
No 159
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.92 E-value=6e-05 Score=66.82 Aligned_cols=76 Identities=22% Similarity=0.379 Sum_probs=64.6
Q ss_pred CCCC-eEEEcCCCCCCCHHHHHHHhhccCCe-eEEEe--ecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEE
Q 024135 4 RASR-TLYVGNLPGDIREREVEDLFYKYGPI-AHIDL--KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (272)
Q Consensus 4 ~~~~-~l~v~nL~~~~t~~~l~~~F~~~G~v-~~v~~--~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~ 79 (272)
++-+ +|-+.|+|.+++.+||.+||..|-.+ .+|.+ ..+|...|-|.|.|++.++|..|...|++..|..+.|.|.+
T Consensus 864 ~pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 864 SPGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CCCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 3444 88999999999999999999999644 33444 44688999999999999999999999999999999988764
No 160
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.84 E-value=1.7e-05 Score=64.61 Aligned_cols=72 Identities=17% Similarity=0.244 Sum_probs=60.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccC--CeeEEEe---ecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEE
Q 024135 7 RTLYVGNLPGDIREREVEDLFYKYG--PIAHIDL---KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (272)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G--~v~~v~~---~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~ 78 (272)
..+|||||-|.+|++||.+.+...| .+.++++ ..+|+++|||+|...+..++++.++.|..+.|.|+.-.|.
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 4689999999999999999988777 3444444 2368999999999999999999999999999999865554
No 161
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.82 E-value=3.4e-05 Score=61.14 Aligned_cols=71 Identities=20% Similarity=0.230 Sum_probs=62.4
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CCeEEEEeCCHHHHHHHHHHhcCcccccceee
Q 024135 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (272)
Q Consensus 106 ~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~ 177 (272)
.....++|+|+...++.++++.+|+.||.+..+.+..+.. ++|+||+|.+.+.++.|+. ||+..+.|..+.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~ 173 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIE 173 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccce
Confidence 3457899999999999999999999999998888877754 4599999999999999999 999999995543
No 162
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.79 E-value=6.2e-05 Score=65.15 Aligned_cols=76 Identities=29% Similarity=0.430 Sum_probs=60.5
Q ss_pred CCeEEEcCCCCCC--CHH----HHHHHhhccCCeeEEEeec--CCCCCceEEEEecChHHHHHHHHhcCCcccC-CceEE
Q 024135 6 SRTLYVGNLPGDI--RER----EVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFD-GHRLR 76 (272)
Q Consensus 6 ~~~l~v~nL~~~~--t~~----~l~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~-g~~i~ 76 (272)
...|+|.|+|--- ..+ -|..+|+++|+|..+.++. .+..+||.|++|.+..+|+.|+..|||..|. ...+.
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~ 137 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFF 137 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEE
Confidence 3578899998642 222 2567899999999999965 3668999999999999999999999998885 56677
Q ss_pred EEEcc
Q 024135 77 VELAH 81 (272)
Q Consensus 77 v~~~~ 81 (272)
|...+
T Consensus 138 v~~f~ 142 (698)
T KOG2314|consen 138 VRLFK 142 (698)
T ss_pred eehhh
Confidence 76554
No 163
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.78 E-value=0.00012 Score=62.85 Aligned_cols=60 Identities=23% Similarity=0.416 Sum_probs=55.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhh-ccCCeeEEEeecC---CCCCceEEEEecChHHHHHHHH
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFY-KYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIR 63 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~-~~G~v~~v~~~~~---~~~~g~afV~f~~~~~a~~a~~ 63 (272)
.+.+|||||+||--++.++|..+|+ .||.|..+-|-.| +.++|-|=|.|.+..+-.+||.
T Consensus 368 DprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 368 DPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred CccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHh
Confidence 5789999999999999999999999 8999999999665 4678999999999999999998
No 164
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.67 E-value=0.00015 Score=56.78 Aligned_cols=101 Identities=27% Similarity=0.270 Sum_probs=81.0
Q ss_pred HHHHHHHhcCCcccCCceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHHhcCCee
Q 024135 57 DAEDAIRGRDGYDFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVC 136 (272)
Q Consensus 57 ~a~~a~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~ 136 (272)
-|..|-..|++....|+.|.|.|+.. ..|+|.||...++-+.|.+.|..||.|.
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~--------------------------a~l~V~nl~~~~sndll~~~f~~fg~~e 59 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMH--------------------------AELYVVNLMQGASNDLLEQAFRRFGPIE 59 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeecc--------------------------ceEEEEecchhhhhHHHHHhhhhcCccc
Confidence 35667777999999999999999853 5899999999999999999999999998
Q ss_pred EEEEEecC---CCCeEEEEeCCHHHHHHHHHHhcCcccccceeeeEEEee
Q 024135 137 FSQVFRDG---SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVR 183 (272)
Q Consensus 137 ~~~~~~~~---~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~~ 183 (272)
...+..|. ..+-++|.|...-.|..|+..+...-+.+.......-|.
T Consensus 60 ~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~Ve 109 (275)
T KOG0115|consen 60 RAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVE 109 (275)
T ss_pred hheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCC
Confidence 76665553 334789999999999999998876666654443443333
No 165
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.65 E-value=0.00014 Score=58.07 Aligned_cols=60 Identities=23% Similarity=0.290 Sum_probs=50.1
Q ss_pred HHHHHHhhccCCeeEEEeecC----CCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEc
Q 024135 21 REVEDLFYKYGPIAHIDLKIP----PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (272)
Q Consensus 21 ~~l~~~F~~~G~v~~v~~~~~----~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (272)
+++.+..++||.|..|.|... .+..--.||+|...++|.+|+-.|||..|+|+.+...|-
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 557888999999999888432 122346899999999999999999999999999988775
No 166
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.61 E-value=0.0002 Score=42.87 Aligned_cols=52 Identities=17% Similarity=0.272 Sum_probs=41.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHHHH
Q 024135 109 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAI 163 (272)
Q Consensus 109 ~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~ 163 (272)
..|.|.|.+....+ .+..+|..||+|..+.+... ..+.+|.|.+..+|+.|+
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~~--~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPES--TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCCC--CcEEEEEECCHHHHHhhC
Confidence 45778888876664 45558899999999888722 338999999999999985
No 167
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.58 E-value=4.8e-06 Score=75.09 Aligned_cols=155 Identities=14% Similarity=0.113 Sum_probs=114.2
Q ss_pred eEEEcCCCCCCCHH-HHHHHhhccCCeeEEEeecC---CCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEccCC
Q 024135 8 TLYVGNLPGDIRER-EVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (272)
Q Consensus 8 ~l~v~nL~~~~t~~-~l~~~F~~~G~v~~v~~~~~---~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~ 83 (272)
...+.|+.+..... .+...|..+|.|+.|.+... .+...++++++....+++.|.. ..+..+.++.+.|..+...
T Consensus 573 e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~-pa~~~~a~~~~av~~ad~~ 651 (881)
T KOG0128|consen 573 EKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATV-PAGGALANRSAAVGLADAE 651 (881)
T ss_pred hhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhccc-ccccccCCccccCCCCCch
Confidence 35667777766555 57889999999999998542 2333489999999999999988 8888898988888776543
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEE----ecCCCCeEEEEeCCHHHH
Q 024135 84 RGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVF----RDGSGTTGIVDYTNYDDM 159 (272)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~----~~~~~~~~fv~f~~~~~a 159 (272)
........ ....-..-.++||.||+..+.+.+|...|..+|.+..+.+. .+...|+|++.|..++++
T Consensus 652 ~~~~~~kv---------s~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~ 722 (881)
T KOG0128|consen 652 EKEENFKV---------SPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHA 722 (881)
T ss_pred hhhhccCc---------CchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCch
Confidence 31111000 00111234689999999999999999999999977765443 445668999999999999
Q ss_pred HHHHHHhcCcccc
Q 024135 160 KHAIKKLDDSEFR 172 (272)
Q Consensus 160 ~~a~~~l~~~~~~ 172 (272)
.+|+...++..++
T Consensus 723 ~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 723 GAAVAFRDSCFFG 735 (881)
T ss_pred hhhhhhhhhhhhh
Confidence 9999966555544
No 168
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.56 E-value=0.0006 Score=49.38 Aligned_cols=56 Identities=23% Similarity=0.455 Sum_probs=45.9
Q ss_pred HHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEccCC
Q 024135 22 EVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (272)
Q Consensus 22 ~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~ 83 (272)
+|.+.|..||+|.=+++. -+.-+|.|.+-+.|.+|+. |+|..+.|+.|+|....+.
T Consensus 52 ~ll~~~~~~GevvLvRfv-----~~~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFV-----GDTMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHCCS-ECEEEEE-----TTCEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE----
T ss_pred HHHHHHHhCCceEEEEEe-----CCeEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCcc
Confidence 578889999999888776 2467999999999999999 9999999999999886543
No 169
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.50 E-value=0.00018 Score=65.62 Aligned_cols=81 Identities=28% Similarity=0.436 Sum_probs=70.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCC--ceEEEEEc
Q 024135 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG--HRLRVELA 80 (272)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g--~~i~v~~~ 80 (272)
+.+++.++|++|.+++....|...|..||.|..|.+. +...||||.|++...|+.|++.|-|..|+| +.|.|.|+
T Consensus 452 st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~---hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla 528 (975)
T KOG0112|consen 452 STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR---HGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLA 528 (975)
T ss_pred cccceeeccCCCCCCChHHHHHHHhhccCcceeeecc---cCCcceeeecccCccchhhHHHHhcCcCCCCCcccccccc
Confidence 3578899999999999999999999999999998885 335699999999999999999999999975 57899998
Q ss_pred cCCCCC
Q 024135 81 HGGRGR 86 (272)
Q Consensus 81 ~~~~~~ 86 (272)
......
T Consensus 529 ~~~~~~ 534 (975)
T KOG0112|consen 529 SPPGAT 534 (975)
T ss_pred cCCCCC
Confidence 865443
No 170
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.41 E-value=0.00011 Score=57.47 Aligned_cols=68 Identities=13% Similarity=0.175 Sum_probs=60.2
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC---------C-------eEEEEeCCHHHHHHHHHHhcCccc
Q 024135 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG---------T-------TGIVDYTNYDDMKHAIKKLDDSEF 171 (272)
Q Consensus 108 ~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~---------~-------~~fv~f~~~~~a~~a~~~l~~~~~ 171 (272)
.-.||++++|+.+....|+++|..||.|-.|.+...... + -|+|+|.+...|..+...||+..|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 458999999999999999999999999999998766422 2 289999999999999999999999
Q ss_pred ccce
Q 024135 172 RNAF 175 (272)
Q Consensus 172 ~g~~ 175 (272)
+|+.
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 9954
No 171
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.34 E-value=0.0004 Score=54.57 Aligned_cols=58 Identities=14% Similarity=0.173 Sum_probs=46.1
Q ss_pred HHHHHHHH-hcCCeeEEEEEecC---CCCeEEEEeCCHHHHHHHHHHhcCcccccceeeeEE
Q 024135 123 QDLKDHMR-RAGDVCFSQVFRDG---SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (272)
Q Consensus 123 ~~l~~~f~-~~G~i~~~~~~~~~---~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~ 180 (272)
++|...|. +||+|+.+.|-.+- -.|.++|.|...++|+.|++.||+..+.|+.+...+
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~ 144 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAEL 144 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeee
Confidence 45555555 89999988776653 235799999999999999999999999997765543
No 172
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.27 E-value=0.0021 Score=41.62 Aligned_cols=54 Identities=17% Similarity=0.289 Sum_probs=41.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcC
Q 024135 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRD 66 (272)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~ 66 (272)
+..+|+ +|......||.++|+.||.|.---|. -.-|||...+.+.|..|+..+.
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi~-----dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWIN-----DTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEEEEEEC-----TTEEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEEEEEEc-----CCcEEEEeecHHHHHHHHHHhc
Confidence 556776 99999999999999999988654443 2489999999999999998775
No 173
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=97.19 E-value=0.0037 Score=43.46 Aligned_cols=67 Identities=13% Similarity=0.103 Sum_probs=49.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcc-CCeeEEEeecCCC-CCceEEEEecChHHHHHHHHhcCCcccC
Q 024135 5 ASRTLYVGNLPGDIREREVEDLFYKY-GPIAHIDLKIPPR-PPGYAFVEFEEARDAEDAIRGRDGYDFD 71 (272)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~-G~v~~v~~~~~~~-~~g~afV~f~~~~~a~~a~~~l~g~~~~ 71 (272)
.+..+.+...|..++.++|..+.+.+ ..|..++|..++. ++-.+.|.|.++++|.+.+..+||+.|.
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 34445555555556666776666655 3577888877765 4557899999999999999999999885
No 174
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.08 E-value=0.0025 Score=43.44 Aligned_cols=65 Identities=22% Similarity=0.233 Sum_probs=46.8
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeeEEE-E----------EecCCCCeEEEEeCCHHHHHHHHHHhcCcccccc
Q 024135 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQ-V----------FRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNA 174 (272)
Q Consensus 108 ~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~-~----------~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~ 174 (272)
..-|.|.+.|+. ....|.++|++||.|.... + .....+.+-.|+|.++.+|.+|+. .||..+.|.
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~ 81 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGS 81 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTC
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCc
Confidence 456888999888 5677889999999987764 1 111223388999999999999999 888888874
No 175
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=97.07 E-value=0.0054 Score=43.95 Aligned_cols=73 Identities=19% Similarity=0.252 Sum_probs=57.1
Q ss_pred CCCCeEEEcCCCCCCCH----HHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEE
Q 024135 4 RASRTLYVGNLPGDIRE----REVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~----~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~ 79 (272)
-|--||.|.-|..++.. ..|...++.||+|.+|.+. .+..|.|.|.+..+|-.|+..++. ...|.-+.+.|
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c----GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsW 158 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC----GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSW 158 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec----CCceEEEEehhhHHHHHHHHhhcC-CCCCceEEeec
Confidence 35568889887777543 3366678899999999874 245899999999999999998876 56677888887
Q ss_pred cc
Q 024135 80 AH 81 (272)
Q Consensus 80 ~~ 81 (272)
-.
T Consensus 159 qq 160 (166)
T PF15023_consen 159 QQ 160 (166)
T ss_pred cc
Confidence 54
No 176
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.03 E-value=0.00095 Score=54.99 Aligned_cols=73 Identities=19% Similarity=0.272 Sum_probs=60.5
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHHhcCCeeE--------EEEEecC----CCCeEEEEeCCHHHHHHHHHHhcCcccc
Q 024135 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCF--------SQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFR 172 (272)
Q Consensus 105 ~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~--------~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~~~~~~ 172 (272)
.....+|||-+|+..+++.+|.++|.++|.|.. |++.++. .++-|.|.|.++..|+.|+..++++.+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 345679999999999999999999999997753 4444443 4458999999999999999999999999
Q ss_pred cceee
Q 024135 173 NAFSR 177 (272)
Q Consensus 173 g~~~~ 177 (272)
+..++
T Consensus 143 gn~ik 147 (351)
T KOG1995|consen 143 GNTIK 147 (351)
T ss_pred CCCch
Confidence 85443
No 177
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.03 E-value=0.0021 Score=52.52 Aligned_cols=76 Identities=17% Similarity=0.245 Sum_probs=59.0
Q ss_pred CCCCccceEEEcCCCCCCCHHH------HHHHHHhcCCeeEEEEEecCC-----CC--eEEEEeCCHHHHHHHHHHhcCc
Q 024135 103 VSRRSEYRVLVTGLPSSASWQD------LKDHMRRAGDVCFSQVFRDGS-----GT--TGIVDYTNYDDMKHAIKKLDDS 169 (272)
Q Consensus 103 ~~~~~~~~~~v~nl~~~~~~~~------l~~~f~~~G~i~~~~~~~~~~-----~~--~~fv~f~~~~~a~~a~~~l~~~ 169 (272)
.......-+||-+|++.+..++ -.++|.+||.|..|.|.+... .+ -.||+|.+.++|..|+.+.+|.
T Consensus 109 iRVvQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs 188 (480)
T COG5175 109 IRVVQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGS 188 (480)
T ss_pred ceeeecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccc
Confidence 3344566789999998886665 246899999999988865531 11 2489999999999999999999
Q ss_pred ccccceeee
Q 024135 170 EFRNAFSRA 178 (272)
Q Consensus 170 ~~~g~~~~~ 178 (272)
.++|+..+.
T Consensus 189 ~~DGr~lka 197 (480)
T COG5175 189 LLDGRVLKA 197 (480)
T ss_pred cccCceEee
Confidence 999965543
No 178
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.02 E-value=0.00077 Score=56.69 Aligned_cols=66 Identities=14% Similarity=0.289 Sum_probs=55.7
Q ss_pred CCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEec---CC--------------CCeEEEEeCCHHHHHHHHHHh
Q 024135 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD---GS--------------GTTGIVDYTNYDDMKHAIKKL 166 (272)
Q Consensus 104 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~---~~--------------~~~~fv~f~~~~~a~~a~~~l 166 (272)
...+..+|.+.|||.+-.-+.|.++|..+|.|..|.|.+- +. .-+|+|+|+..+.|.+|.+.|
T Consensus 227 eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 227 EELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred cccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 3456789999999999999999999999999999988765 21 126999999999999999988
Q ss_pred cCc
Q 024135 167 DDS 169 (272)
Q Consensus 167 ~~~ 169 (272)
+..
T Consensus 307 ~~e 309 (484)
T KOG1855|consen 307 NPE 309 (484)
T ss_pred chh
Confidence 543
No 179
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.91 E-value=0.00095 Score=50.86 Aligned_cols=82 Identities=18% Similarity=0.171 Sum_probs=52.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhc-cCCe---eEEEeecC-----CCCCceEEEEecChHHHHHHHHhcCCcccCCc-
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYK-YGPI---AHIDLKIP-----PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGH- 73 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~-~G~v---~~v~~~~~-----~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~- 73 (272)
.....|.|++||+++|++++.+.+.. ++.. ..+.-... .....-|||.|.+.+++......++|..|.+.
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 45678999999999999999997776 6655 23321111 12245799999999999999999999887432
Q ss_pred ----eEEEEEccCCCC
Q 024135 74 ----RLRVELAHGGRG 85 (272)
Q Consensus 74 ----~i~v~~~~~~~~ 85 (272)
...|++|.....
T Consensus 85 g~~~~~~VE~Apyqk~ 100 (176)
T PF03467_consen 85 GNEYPAVVEFAPYQKV 100 (176)
T ss_dssp S-EEEEEEEE-SS---
T ss_pred CCCcceeEEEcchhcc
Confidence 457788776443
No 180
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.84 E-value=0.0056 Score=39.69 Aligned_cols=55 Identities=18% Similarity=0.219 Sum_probs=42.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcC
Q 024135 109 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDD 168 (272)
Q Consensus 109 ~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~ 168 (272)
...+|+ +|..+...||.++|+.||.|..-.+-.. .|||...+.+.|..++..++.
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi~dT----SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWINDT----SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEEEEEECTT----EEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEEEEEEcCC----cEEEEeecHHHHHHHHHHhcc
Confidence 445555 9999999999999999999876666444 899999999999999988764
No 181
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.81 E-value=0.0045 Score=54.09 Aligned_cols=67 Identities=24% Similarity=0.325 Sum_probs=55.0
Q ss_pred cceEEEcCCCCCCC------HHHHHHHHHhcCCeeEEEEEecCCC---CeEEEEeCCHHHHHHHHHHhcCcccccc
Q 024135 108 EYRVLVTGLPSSAS------WQDLKDHMRRAGDVCFSQVFRDGSG---TTGIVDYTNYDDMKHAIKKLDDSEFRNA 174 (272)
Q Consensus 108 ~~~~~v~nl~~~~~------~~~l~~~f~~~G~i~~~~~~~~~~~---~~~fv~f~~~~~a~~a~~~l~~~~~~g~ 174 (272)
...|+|.|+|---. ...|..+|+++|++....+..++.+ ||.|++|++..+|+.|++.|||+.++..
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldkn 133 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKN 133 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceeccc
Confidence 46788888875432 3456678999999999999866554 5999999999999999999999999864
No 182
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.74 E-value=0.0058 Score=49.06 Aligned_cols=56 Identities=16% Similarity=0.199 Sum_probs=48.1
Q ss_pred HHHHHHHHHhcCCeeEEEEEecCCC-----CeEEEEeCCHHHHHHHHHHhcCcccccceee
Q 024135 122 WQDLKDHMRRAGDVCFSQVFRDGSG-----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (272)
Q Consensus 122 ~~~l~~~f~~~G~i~~~~~~~~~~~-----~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~ 177 (272)
+.++++.+.+||.|..|.|+..+.- .--||+|+..++|.+|+-.|||.+++|+...
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~ 360 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVS 360 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeee
Confidence 5677888999999999988877543 2579999999999999999999999997654
No 183
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.66 E-value=0.016 Score=35.61 Aligned_cols=54 Identities=15% Similarity=0.266 Sum_probs=42.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcc----CCeeEEEeecCCCCCceEEEEecChHHHHHHHHhc
Q 024135 6 SRTLYVGNLPGDIREREVEDLFYKY----GPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGR 65 (272)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~----G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l 65 (272)
...|+|.|+. +++.++|+.+|..| + ...|....+ ..|-|.|.+.+.|..|+..|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~-~~~IEWIdD----tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEG-PFRIEWIDD----TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCC-CceEEEecC----CcEEEEECCHHHHHHHHHcC
Confidence 4679999984 58889999999988 4 334544433 26899999999999999754
No 184
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.57 E-value=0.0089 Score=50.90 Aligned_cols=68 Identities=16% Similarity=0.302 Sum_probs=58.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcc-CCeeEEEeecCCCCC-ceEEEEecChHHHHHHHHhcCCcccCC
Q 024135 5 ASRTLYVGNLPGDIREREVEDLFYKY-GPIAHIDLKIPPRPP-GYAFVEFEEARDAEDAIRGRDGYDFDG 72 (272)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~-G~v~~v~~~~~~~~~-g~afV~f~~~~~a~~a~~~l~g~~~~g 72 (272)
+++.|+|-.+|..++..||..|...+ -.|.++++..++.+- -.+.|.|.++++|...+..+||..|..
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 47899999999999999999998855 468899998776554 458999999999999999999999864
No 185
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=96.55 E-value=0.0015 Score=58.08 Aligned_cols=120 Identities=16% Similarity=0.146 Sum_probs=81.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEccCCC
Q 024135 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGR 84 (272)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~~ 84 (272)
+.-+|||+||...+..+-++.+...||-|..+.... |||.+|..+..+..|+..|+-..+.|+.+.+.......
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d~q~~ 112 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVDEQTI 112 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh------hcccchhhHHHHHHHHHHhcccCCCcchhhccchhhhh
Confidence 567899999999999999999999999998887652 99999999999999999999999999988877654333
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHHh
Q 024135 85 GRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRR 131 (272)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~ 131 (272)
..................++ ......+|.++|....+......+.-
T Consensus 113 ~n~~k~~~~~~~~~~~f~p~-~srr~e~i~~k~~~l~~~~~~~~~~i 158 (668)
T KOG2253|consen 113 ENADKEKSIANKESHKFVPS-SSRRQESIQNKPLSLDEQIHKKSLQI 158 (668)
T ss_pred cCccccccchhhhhcccCCc-hhHHHHHhhccccchhHHHHHHHHhc
Confidence 22222221111111111111 11344556666666555555444443
No 186
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.46 E-value=0.017 Score=41.92 Aligned_cols=54 Identities=17% Similarity=0.263 Sum_probs=44.0
Q ss_pred HHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCcccccceeeeEEE
Q 024135 123 QDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (272)
Q Consensus 123 ~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~ 181 (272)
.+|.+.|..||++.-+.+..+ .-+|+|.+-+.|..|+. ++|.+++|+..+..++
T Consensus 51 ~~ll~~~~~~GevvLvRfv~~----~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LK 104 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVGD----TMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLK 104 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEETT----CEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE-
T ss_pred HHHHHHHHhCCceEEEEEeCC----eEEEEECccHHHHHHHc-cCCcEECCEEEEEEeC
Confidence 477888999999998888776 57999999999999999 9999999966554443
No 187
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=96.37 E-value=0.018 Score=44.03 Aligned_cols=63 Identities=29% Similarity=0.356 Sum_probs=46.5
Q ss_pred CCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcC--CcccCCceEEEEEccCC
Q 024135 18 IREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRD--GYDFDGHRLRVELAHGG 83 (272)
Q Consensus 18 ~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~--g~~~~g~~i~v~~~~~~ 83 (272)
-..+.|.++|..|+.+..+... .+-+-..|.|.+.++|..|...|+ +..+.|..++|.|+...
T Consensus 7 ~~~~~l~~l~~~~~~~~~~~~L---~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 7 DNLAELEELFSTYDPPVQFSPL---KSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp --HHHHHHHHHTT-SS-EEEEE---TTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hhHHHHHHHHHhcCCceEEEEc---CCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 3457899999999998888775 334578999999999999999999 99999999999998543
No 188
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=96.21 E-value=0.0086 Score=52.28 Aligned_cols=71 Identities=15% Similarity=0.243 Sum_probs=56.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhh--ccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCC--cccCCceEEEE
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFY--KYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDG--YDFDGHRLRVE 78 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~--~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g--~~~~g~~i~v~ 78 (272)
...|.|.|+-||..+-.++|+.||. .|-.+++|.+... ..=||.|++..||+.|+..|.. +.|-|++|...
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N----~nWyITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN----DNWYITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec----CceEEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 3568899999999999999999997 4778999988432 2459999999999999888764 55667666443
No 189
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.20 E-value=0.018 Score=46.57 Aligned_cols=67 Identities=18% Similarity=0.266 Sum_probs=51.9
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceE-EEEE
Q 024135 8 TLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRL-RVEL 79 (272)
Q Consensus 8 ~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i-~v~~ 79 (272)
=|.|-++|+.-. ..|..+|++||+|++.... .+-.+-+|.|.+.-+|.+||. .||+.|+|..+ -|..
T Consensus 199 WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~---~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkp 266 (350)
T KOG4285|consen 199 WVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP---SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKP 266 (350)
T ss_pred eEEEeccCccch-hHHHHHHHhhCeeeeeecC---CCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeee
Confidence 366667776543 5688899999999877654 345699999999999999999 89999987653 4444
No 190
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.19 E-value=0.0065 Score=47.89 Aligned_cols=74 Identities=30% Similarity=0.416 Sum_probs=59.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec--CCCCCceEEEEecChHHHHHHHHhcCCccc----CCceEEEEEc
Q 024135 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDF----DGHRLRVELA 80 (272)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~g~~~----~g~~i~v~~~ 80 (272)
..|+|.||+.-++.+.|.+.|..||+|..-.+.. .++..+-++|+|...-.|.+|...++..-| .+.+.-|...
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~ 111 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPM 111 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChh
Confidence 6799999999999999999999999997766543 467788999999999999999998864333 3455555443
No 191
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=96.18 E-value=0.0033 Score=53.70 Aligned_cols=74 Identities=16% Similarity=0.249 Sum_probs=61.8
Q ss_pred CCCeEEEcCCCCCC-CHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEccC
Q 024135 5 ASRTLYVGNLPGDI-REREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (272)
Q Consensus 5 ~~~~l~v~nL~~~~-t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~ 82 (272)
.++.|-+.-+|..+ +-++|..+|.+||+|..|.+-.. .-.|.|+|.+..+|-.|+. ..+..|+++.|+|.|...
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~---~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS---SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc---hhhheeeeeccccccchhc-cccceecCceeEEEEecC
Confidence 45566666666663 56889999999999999988543 3479999999999999988 899999999999999875
No 192
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=96.12 E-value=0.011 Score=48.31 Aligned_cols=23 Identities=17% Similarity=0.073 Sum_probs=13.3
Q ss_pred CceEEEEecChHHHHHHHHhcCCc
Q 024135 45 PGYAFVEFEEARDAEDAIRGRDGY 68 (272)
Q Consensus 45 ~g~afV~f~~~~~a~~a~~~l~g~ 68 (272)
+.-.||-|..+.-|.+++. |-+.
T Consensus 173 RT~v~vry~pe~iACaciy-LaAR 195 (367)
T KOG0835|consen 173 RTDVFVRYSPESIACACIY-LAAR 195 (367)
T ss_pred ccceeeecCHHHHHHHHHH-HHHh
Confidence 3456777776555555554 4443
No 193
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=96.12 E-value=0.0026 Score=52.10 Aligned_cols=75 Identities=31% Similarity=0.511 Sum_probs=59.3
Q ss_pred CeEEEcCCCCCCCHHHHH---HHhhccCCeeEEEeecCC------CCCceEEEEecChHHHHHHHHhcCCcccCCceEEE
Q 024135 7 RTLYVGNLPGDIREREVE---DLFYKYGPIAHIDLKIPP------RPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (272)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~---~~F~~~G~v~~v~~~~~~------~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v 77 (272)
+-+||-+|+..+..+.+. +.|.+||.|..|.+..+. ....-+||.|...++|..||...+|..++|+.|+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 557888999887666654 478899999999885432 12345999999999999999999999999998776
Q ss_pred EEcc
Q 024135 78 ELAH 81 (272)
Q Consensus 78 ~~~~ 81 (272)
.+..
T Consensus 158 ~~gt 161 (327)
T KOG2068|consen 158 SLGT 161 (327)
T ss_pred hhCC
Confidence 6553
No 194
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=96.04 E-value=0.043 Score=35.31 Aligned_cols=66 Identities=27% Similarity=0.503 Sum_probs=40.1
Q ss_pred eEEEcCC--CCCCCHHHHHHHhhccC-----CeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEc
Q 024135 8 TLYVGNL--PGDIREREVEDLFYKYG-----PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (272)
Q Consensus 8 ~l~v~nL--~~~~t~~~l~~~F~~~G-----~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (272)
++|| |+ -..++..+|..++...+ .|-.|.+. ..|+||+... +.|..++..|++..+.|+.|.|+.|
T Consensus 2 rl~i-n~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~-----~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 2 RLFI-NVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIF-----DNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp EEEE-S-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE------SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred EEEE-EcccccCCCHHHHHHHHHhccCCCHHhEEEEEEe-----eeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4555 33 23488999999998765 45666665 4599999987 6889999999999999999999864
No 195
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.98 E-value=0.071 Score=32.78 Aligned_cols=54 Identities=17% Similarity=0.135 Sum_probs=43.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhc---CCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHh
Q 024135 109 YRVLVTGLPSSASWQDLKDHMRRA---GDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKL 166 (272)
Q Consensus 109 ~~~~v~nl~~~~~~~~l~~~f~~~---G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l 166 (272)
..|+|.|+.. ++.++|+.+|..| .....+..+.|. .|-|-|.+.+.|.+|+.+|
T Consensus 6 eavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDt---ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDT---SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCC---cEEEEECCHHHHHHHHHcC
Confidence 5789999854 7889999999998 234567776665 5889999999999999865
No 196
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=95.73 E-value=0.043 Score=48.12 Aligned_cols=93 Identities=13% Similarity=0.182 Sum_probs=66.2
Q ss_pred HHHHHHHHhcCCcccCCceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHHh--cC
Q 024135 56 RDAEDAIRGRDGYDFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRR--AG 133 (272)
Q Consensus 56 ~~a~~a~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~--~G 133 (272)
.-..+++....+..++.+-.+|... ...+.|++.-||+.+..++++.+|+. |-
T Consensus 148 dLI~Evlresp~VqvDekgekVrp~-------------------------~kRcIvilREIpettp~e~Vk~lf~~encP 202 (684)
T KOG2591|consen 148 DLIVEVLRESPNVQVDEKGEKVRPN-------------------------HKRCIVILREIPETTPIEVVKALFKGENCP 202 (684)
T ss_pred HHHHHHHhcCCCceeccCccccccC-------------------------cceeEEEEeecCCCChHHHHHHHhccCCCC
Confidence 3344556656666666555555332 23467888999999999999999975 67
Q ss_pred CeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcC--ccccccee
Q 024135 134 DVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDD--SEFRNAFS 176 (272)
Q Consensus 134 ~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~--~~~~g~~~ 176 (272)
.++.|.+..+. .=||+|++..||+.|.+.|.. ++|.|+.+
T Consensus 203 k~iscefa~N~---nWyITfesd~DAQqAykylreevk~fqgKpI 244 (684)
T KOG2591|consen 203 KVISCEFAHND---NWYITFESDTDAQQAYKYLREEVKTFQGKPI 244 (684)
T ss_pred CceeeeeeecC---ceEEEeecchhHHHHHHHHHHHHHhhcCcch
Confidence 88888887664 348999999999999887643 34555443
No 197
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=95.72 E-value=0.011 Score=48.67 Aligned_cols=68 Identities=15% Similarity=0.186 Sum_probs=57.5
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHHhcC--CeeEEEEEecC----CCCeEEEEeCCHHHHHHHHHHhcCcccccc
Q 024135 107 SEYRVLVTGLPSSASWQDLKDHMRRAG--DVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNA 174 (272)
Q Consensus 107 ~~~~~~v~nl~~~~~~~~l~~~f~~~G--~i~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~ 174 (272)
...++||+||-+-+|+++|.+.+...| .+..++++.+. .+|||+|-..+....++.++-|-.+++.|.
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ 152 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQ 152 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCC
Confidence 457899999999999999999998887 45556666554 456999999999999999999999999885
No 198
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=95.08 E-value=0.037 Score=45.42 Aligned_cols=11 Identities=0% Similarity=0.190 Sum_probs=5.9
Q ss_pred CCCHHHHHHHH
Q 024135 119 SASWQDLKDHM 129 (272)
Q Consensus 119 ~~~~~~l~~~f 129 (272)
++++++|.++.
T Consensus 212 d~~k~eid~ic 222 (367)
T KOG0835|consen 212 DTTKREIDEIC 222 (367)
T ss_pred CCcHHHHHHHH
Confidence 34556655544
No 199
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.97 E-value=0.15 Score=45.05 Aligned_cols=81 Identities=21% Similarity=0.359 Sum_probs=64.0
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHhhcc----CCeeEEEeecC-------------CC---------------------
Q 024135 3 SRASRTLYVGNLPGD-IREREVEDLFYKY----GPIAHIDLKIP-------------PR--------------------- 43 (272)
Q Consensus 3 ~~~~~~l~v~nL~~~-~t~~~l~~~F~~~----G~v~~v~~~~~-------------~~--------------------- 43 (272)
+.+++.|-|.||.|+ |...+|..+|..| |.|.+|.|..+ |.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 457889999999997 9999999999877 58999988321 11
Q ss_pred ---------------C-CceEEEEecChHHHHHHHHhcCCcccC--CceEEEEEccCC
Q 024135 44 ---------------P-PGYAFVEFEEARDAEDAIRGRDGYDFD--GHRLRVELAHGG 83 (272)
Q Consensus 44 ---------------~-~g~afV~f~~~~~a~~a~~~l~g~~~~--g~~i~v~~~~~~ 83 (272)
. .-||.|+|.+++.|.+.+..|+|..|. +..|-+.|-...
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIPDd 308 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIPDD 308 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecCCC
Confidence 0 137999999999999999999999996 556666665543
No 200
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=94.88 E-value=0.015 Score=47.61 Aligned_cols=12 Identities=0% Similarity=0.221 Sum_probs=5.7
Q ss_pred HHHHHHHHHhcC
Q 024135 122 WQDLKDHMRRAG 133 (272)
Q Consensus 122 ~~~l~~~f~~~G 133 (272)
+.+|.+-|.++-
T Consensus 226 qkqId~~ie~r~ 237 (453)
T KOG2888|consen 226 QKQIDEKIEERK 237 (453)
T ss_pred HHHHHHHHHhcc
Confidence 344555555443
No 201
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=94.53 E-value=0.029 Score=49.55 Aligned_cols=66 Identities=14% Similarity=0.195 Sum_probs=54.0
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHHh-cCCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCcccc
Q 024135 105 RRSEYRVLVTGLPSSASWQDLKDHMRR-AGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR 172 (272)
Q Consensus 105 ~~~~~~~~v~nl~~~~~~~~l~~~f~~-~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~ 172 (272)
......|+|.||--..|.-+|++++.. +|.|...+|-+- +..|||.|.+.++|.....+|||..+.
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkI--KShCyV~yss~eEA~atr~AlhnV~WP 507 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKI--KSHCYVSYSSVEEAAATREALHNVQWP 507 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHh--hcceeEecccHHHHHHHHHHHhccccC
Confidence 346778999999999999999999985 556666644333 337999999999999999999998875
No 202
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.29 E-value=0.75 Score=32.07 Aligned_cols=65 Identities=11% Similarity=0.137 Sum_probs=49.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhcC-CeeEEEEEecCCCC--eEEEEeCCHHHHHHHHHHhcCccccc
Q 024135 109 YRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDGSGT--TGIVDYTNYDDMKHAIKKLDDSEFRN 173 (272)
Q Consensus 109 ~~~~v~nl~~~~~~~~l~~~f~~~G-~i~~~~~~~~~~~~--~~fv~f~~~~~a~~a~~~l~~~~~~g 173 (272)
..+.+...|..++.++|..+...+- .|..+.+.++.... .+++.|.+.++|.+-...+||+.++.
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 3444555666667777776666664 56678888875543 68899999999999999999999875
No 203
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.24 E-value=0.091 Score=40.07 Aligned_cols=70 Identities=13% Similarity=0.237 Sum_probs=46.9
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHHh-cCCe---eEEEEEecCCC------CeEEEEeCCHHHHHHHHHHhcCccccccee
Q 024135 107 SEYRVLVTGLPSSASWQDLKDHMRR-AGDV---CFSQVFRDGSG------TTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (272)
Q Consensus 107 ~~~~~~v~nl~~~~~~~~l~~~f~~-~G~i---~~~~~~~~~~~------~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~ 176 (272)
....|.|.+||+.+|++++.+.+.. ++.. .++.-...... .-|||.|.+.+++..-...++|..+-+...
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 3468999999999999999997776 6655 22321122111 169999999999999999999987765443
No 204
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=93.90 E-value=0.025 Score=46.24 Aligned_cols=13 Identities=46% Similarity=0.434 Sum_probs=4.9
Q ss_pred CCCCCCCCCCccc
Q 024135 248 RSRSGSKPRSLSR 260 (272)
Q Consensus 248 r~r~~srsrs~~r 260 (272)
|++++++.+|+..
T Consensus 389 RSrsrsre~s~kh 401 (453)
T KOG2888|consen 389 RSRSRSREPSPKH 401 (453)
T ss_pred cccccccCCCccc
Confidence 3333333334333
No 205
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=93.79 E-value=3.1 Score=34.03 Aligned_cols=162 Identities=12% Similarity=0.160 Sum_probs=94.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCC----------CCCceEEEEecChHHHHHHHHh----cCC--cc
Q 024135 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPP----------RPPGYAFVEFEEARDAEDAIRG----RDG--YD 69 (272)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~----------~~~g~afV~f~~~~~a~~a~~~----l~g--~~ 69 (272)
++.|.+.|+..+++-..+...|-+||+|++|++.... .....+.+-|.+.+.|...+.. |+. ..
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 4678889999999999999999999999999996433 3346889999999988866442 332 34
Q ss_pred cCCceEEEEEccCCCCCCCC-CCCCCCC------CCCCCCCCCCccceEEEcCCCCCCCHHH-HHH---HHHhcCC----
Q 024135 70 FDGHRLRVELAHGGRGRSSS-DRHSSHS------SGRGRGVSRRSEYRVLVTGLPSSASWQD-LKD---HMRRAGD---- 134 (272)
Q Consensus 70 ~~g~~i~v~~~~~~~~~~~~-~~~~~~~------~~~~~~~~~~~~~~~~v~nl~~~~~~~~-l~~---~f~~~G~---- 134 (272)
+.-..|.|.|..-.-..... .....+- .-...-........|.|.= ...+..++ +.+ ++..-+.
T Consensus 95 L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF-~~~~~~~dl~~~kL~fL~~~~n~RYV 173 (309)
T PF10567_consen 95 LKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEF-KDPVDKDDLIEKKLPFLKNSNNKRYV 173 (309)
T ss_pred cCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEe-cCccchhHHHHHhhhhhccCCCceEE
Confidence 55667777765521111000 0000000 0000001112233444432 22332222 222 2233332
Q ss_pred eeEEEEEecC------CCCeEEEEeCCHHHHHHHHHHhcC
Q 024135 135 VCFSQVFRDG------SGTTGIVDYTNYDDMKHAIKKLDD 168 (272)
Q Consensus 135 i~~~~~~~~~------~~~~~fv~f~~~~~a~~a~~~l~~ 168 (272)
++.+.++... +..||.++|-+..-|.+.++.+..
T Consensus 174 lEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~ 213 (309)
T PF10567_consen 174 LESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKS 213 (309)
T ss_pred EEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHh
Confidence 4556666442 234999999999999999987763
No 206
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=93.61 E-value=0.49 Score=29.54 Aligned_cols=55 Identities=22% Similarity=0.446 Sum_probs=43.6
Q ss_pred CCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEE
Q 024135 17 DIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (272)
Q Consensus 17 ~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v 77 (272)
.++.++|+..+..|+ ...|.... .|| ||.|.+.++|+.++...+|..+.+-.|.+
T Consensus 11 ~~~v~d~K~~Lr~y~-~~~I~~d~----tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR-WDRIRDDR----TGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCC-cceEEecC----CEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 478899999999996 34444432 344 99999999999999999999888776654
No 207
>PF06495 Transformer: Fruit fly transformer protein; InterPro: IPR010519 This family consists of transformer proteins from several Drosophila species and also from Ceratitis capitata (Mediterranean fruit fly). The transformer locus (tra) produces an RNA processing protein that alternatively splices the doublesex pre-mRNA in the sex determination hierarchy of Drosophila melanogaster [].; GO: 0006397 mRNA processing, 0046660 female sex differentiation, 0005634 nucleus
Probab=93.57 E-value=0.09 Score=38.98 Aligned_cols=6 Identities=50% Similarity=0.540 Sum_probs=2.6
Q ss_pred CCCCCC
Q 024135 251 SGSKPR 256 (272)
Q Consensus 251 ~~srsr 256 (272)
++|+.+
T Consensus 102 SRS~~R 107 (182)
T PF06495_consen 102 SRSRHR 107 (182)
T ss_pred ccCccc
Confidence 344444
No 208
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=93.19 E-value=0.07 Score=49.22 Aligned_cols=69 Identities=22% Similarity=0.220 Sum_probs=56.4
Q ss_pred cCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCccc--CCceEEEEEccCC
Q 024135 12 GNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDF--DGHRLRVELAHGG 83 (272)
Q Consensus 12 ~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~--~g~~i~v~~~~~~ 83 (272)
-|.+-+.+-.-|-.+|..||.|.+..... .-..|.|+|...+.|..|+..|+|+.+ .|-+.+|.+++..
T Consensus 304 ~nn~v~~tSssL~~l~s~yg~v~s~wtlr---~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 304 ENNAVNLTSSSLATLCSDYGSVASAWTLR---DLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hcccccchHHHHHHHHHhhcchhhheecc---cccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 34444567777899999999999987753 245899999999999999999999886 4888999998744
No 209
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=92.04 E-value=0.32 Score=32.27 Aligned_cols=72 Identities=24% Similarity=0.351 Sum_probs=44.5
Q ss_pred EEEEecChHHHHHHHHhcCC-cccCCceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHH
Q 024135 48 AFVEFEEARDAEDAIRGRDG-YDFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLK 126 (272)
Q Consensus 48 afV~f~~~~~a~~a~~~l~g-~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~ 126 (272)
|+|.|.+++-|+..+..-.. ..+.+..+.|............- .-....+..+|.|.|||....+++|+
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~----------qv~~~vs~rtVlvsgip~~l~ee~l~ 70 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKF----------QVFSGVSKRTVLVSGIPDVLDEEELR 70 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEE----------EEEEcccCCEEEEeCCCCCCChhhhe
Confidence 68999999999998884322 33456666665543211110000 00112345789999999999999887
Q ss_pred HHH
Q 024135 127 DHM 129 (272)
Q Consensus 127 ~~f 129 (272)
+..
T Consensus 71 D~L 73 (88)
T PF07292_consen 71 DKL 73 (88)
T ss_pred eeE
Confidence 764
No 210
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=92.03 E-value=0.006 Score=51.46 Aligned_cols=77 Identities=17% Similarity=0.339 Sum_probs=64.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEccC
Q 024135 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (272)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~ 82 (272)
++.+.|.|||+....+.|-.|+..||.|..|....+.......-|.|...+.+..|++.|||..+....++|.|-..
T Consensus 80 srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiPd 156 (584)
T KOG2193|consen 80 SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIPD 156 (584)
T ss_pred hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCch
Confidence 45688999999999999999999999999988754433334556778899999999999999999999999888653
No 211
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=91.60 E-value=1.1 Score=32.44 Aligned_cols=61 Identities=8% Similarity=0.135 Sum_probs=45.2
Q ss_pred CccceEEEcCCCCCC----CHHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCc
Q 024135 106 RSEYRVLVTGLPSSA----SWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDS 169 (272)
Q Consensus 106 ~~~~~~~v~nl~~~~----~~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~ 169 (272)
.+..+|.|.=|..++ +...+...++.||+|..+...--. .|.|.|++...|-.|+.+++..
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrq---savVvF~d~~SAC~Av~Af~s~ 148 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQ---SAVVVFKDITSACKAVSAFQSR 148 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCc---eEEEEehhhHHHHHHHHhhcCC
Confidence 455778886655554 334455567889999988765332 6999999999999999988773
No 212
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=91.42 E-value=0.14 Score=42.25 Aligned_cols=69 Identities=17% Similarity=0.180 Sum_probs=54.1
Q ss_pred ccceEEEcCCCCCCCHHHHHH---HHHhcCCeeEEEEEecCC--C---C--eEEEEeCCHHHHHHHHHHhcCcccccce
Q 024135 107 SEYRVLVTGLPSSASWQDLKD---HMRRAGDVCFSQVFRDGS--G---T--TGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (272)
Q Consensus 107 ~~~~~~v~nl~~~~~~~~l~~---~f~~~G~i~~~~~~~~~~--~---~--~~fv~f~~~~~a~~a~~~l~~~~~~g~~ 175 (272)
...-+||-+|+..+..+.+.+ .|.+||.|..+.+..+.. . + -++|+|+..++|..|+...+|..++|+.
T Consensus 76 qknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~ 154 (327)
T KOG2068|consen 76 QKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRA 154 (327)
T ss_pred hhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhh
Confidence 345677888887775555443 688899999998888662 1 1 5899999999999999999999998854
No 213
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=91.16 E-value=1.4 Score=36.10 Aligned_cols=63 Identities=16% Similarity=0.218 Sum_probs=49.9
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCcccccc
Q 024135 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNA 174 (272)
Q Consensus 108 ~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~ 174 (272)
+.=|-|.++++.. -..|..+|.+||.|...... ..+.+-+|.|.+.-+|.+|+. .||..|+|.
T Consensus 197 D~WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~--~ngNwMhirYssr~~A~KALs-kng~ii~g~ 259 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTP--SNGNWMHIRYSSRTHAQKALS-KNGTIIDGD 259 (350)
T ss_pred cceEEEeccCccc-hhHHHHHHHhhCeeeeeecC--CCCceEEEEecchhHHHHhhh-hcCeeeccc
Confidence 4456677777654 45677899999999877665 445589999999999999999 788888874
No 214
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=90.50 E-value=0.43 Score=43.08 Aligned_cols=67 Identities=13% Similarity=0.044 Sum_probs=58.3
Q ss_pred CCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCcccccce
Q 024135 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (272)
Q Consensus 104 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~ 175 (272)
+..+..++||+|+...+..+-++.+...+|-|..+.... |||++|....-...|+..+....++|..
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~-----fgf~~f~~~~~~~ra~r~~t~~~~~~~k 102 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK-----FGFCEFLKHIGDLRASRLLTELNIDDQK 102 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh-----hcccchhhHHHHHHHHHHhcccCCCcch
Confidence 345678999999999999999999999999988776554 9999999999999999998888887743
No 215
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=90.36 E-value=1.5 Score=37.92 Aligned_cols=66 Identities=12% Similarity=0.232 Sum_probs=57.2
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhcC-CeeEEEEEecCCCC--eEEEEeCCHHHHHHHHHHhcCccccc
Q 024135 108 EYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDGSGT--TGIVDYTNYDDMKHAIKKLDDSEFRN 173 (272)
Q Consensus 108 ~~~~~v~nl~~~~~~~~l~~~f~~~G-~i~~~~~~~~~~~~--~~fv~f~~~~~a~~a~~~l~~~~~~g 173 (272)
+..|.|-.+|..++-.||..++..+- .|..+.++++.... ..+|.|.+..+|....+.+||+.++.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 67899999999999999999998765 67788888875432 68999999999999999999999975
No 216
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=89.29 E-value=0.48 Score=35.01 Aligned_cols=120 Identities=18% Similarity=0.131 Sum_probs=75.1
Q ss_pred EEEcCCC--CCCCHHHHHHHhhcc-CCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEccCCCC
Q 024135 9 LYVGNLP--GDIREREVEDLFYKY-GPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRG 85 (272)
Q Consensus 9 l~v~nL~--~~~t~~~l~~~F~~~-G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~~~ 85 (272)
..|+.+. ..++...|.+.+... +....+.+.. ...++..+.|.+++++..++. .....+.|..+.+....+...
T Consensus 18 ~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~--l~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~ 94 (153)
T PF14111_consen 18 CLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRD--LGDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFN 94 (153)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEE--eCCCeEEEEEEeccceeEEEe-cccccccccchhhhhhccccc
Confidence 3455542 346677777766642 3333333321 125799999999999999888 555667777777765542221
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccceEEEcCCCCC-CCHHHHHHHHHhcCCeeEEEEEecC
Q 024135 86 RSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDG 144 (272)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~-~~~~~l~~~f~~~G~i~~~~~~~~~ 144 (272)
.... .......=|-|.|||.. .+++-+..+.+.+|.+..++.....
T Consensus 95 ~~~~-------------~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~~ 141 (153)
T PF14111_consen 95 PSEV-------------KFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTLK 141 (153)
T ss_pred cccc-------------ceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCCC
Confidence 1100 00111233667899987 5889999999999999988776554
No 217
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=89.28 E-value=0.32 Score=42.05 Aligned_cols=69 Identities=16% Similarity=0.206 Sum_probs=52.4
Q ss_pred ccceEEEcCCCCCC-CHHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCcccccceeee
Q 024135 107 SEYRVLVTGLPSSA-SWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (272)
Q Consensus 107 ~~~~~~v~nl~~~~-~~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~ 178 (272)
....+.+...+..+ +..+|..+|.+||.|..|.+-... --|.|+|.+..+|-+|.. .++..|+++.+++
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~--~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl 440 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS--LHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKL 440 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCch--hhheeeeeccccccchhc-cccceecCceeEE
Confidence 34455555556554 789999999999999999987662 268999999999977766 7888888854443
No 218
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.36 E-value=1.3 Score=37.60 Aligned_cols=60 Identities=15% Similarity=0.184 Sum_probs=45.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCe-eEEEeecCCCCCceEEEEecChHHHHHHHHhcCCccc
Q 024135 6 SRTLYVGNLPGDIREREVEDLFYKYGPI-AHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDF 70 (272)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G~v-~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~ 70 (272)
.++|-|.++|.....+||...|+.|+.- -+|+++.+ ..||..|.+...|..|+. |...++
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd----thalaVFss~~~AaeaLt-~kh~~l 451 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD----THALAVFSSVNRAAEALT-LKHDWL 451 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec----ceeEEeecchHHHHHHhh-ccCceE
Confidence 4789999999999999999999999732 22333222 379999999999999999 544333
No 219
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=86.45 E-value=0.78 Score=34.59 Aligned_cols=76 Identities=20% Similarity=0.264 Sum_probs=55.4
Q ss_pred CeEEEcCCCCCCCH-----HHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCc-eEEEEEc
Q 024135 7 RTLYVGNLPGDIRE-----REVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGH-RLRVELA 80 (272)
Q Consensus 7 ~~l~v~nL~~~~t~-----~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~-~i~v~~~ 80 (272)
+++.+.+|+..+-. ....++|.+|-+...+.+. .+.+..-|.|.+++.|..|...+++..|.|. .+++.++
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~l---rsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfa 87 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLL---RSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFA 87 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHH---HhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEc
Confidence 45777788776322 2356677766666555554 3356778899999999999999999999988 8898888
Q ss_pred cCCCC
Q 024135 81 HGGRG 85 (272)
Q Consensus 81 ~~~~~ 85 (272)
.....
T Consensus 88 Q~~~~ 92 (193)
T KOG4019|consen 88 QPGHP 92 (193)
T ss_pred cCCCc
Confidence 75443
No 220
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=85.69 E-value=3 Score=32.06 Aligned_cols=56 Identities=11% Similarity=0.070 Sum_probs=42.4
Q ss_pred CHHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhc--Ccccccceeee
Q 024135 121 SWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLD--DSEFRNAFSRA 178 (272)
Q Consensus 121 ~~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~--~~~~~g~~~~~ 178 (272)
....|+++|..++.+........-. -..|.|.+.+.|..|...|+ +..+.|...+.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sFr--Ri~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~ 65 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSFR--RIRVVFESPESAQRARQLLHWDGTSFNGKRLRV 65 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTTT--EEEEE-SSTTHHHHHHHTST--TSEETTEE-EE
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCC--EEEEEeCCHHHHHHHHHHhcccccccCCCceEE
Confidence 5688999999999888777766533 47899999999999999999 88999855443
No 221
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=85.39 E-value=5.2 Score=25.52 Aligned_cols=56 Identities=11% Similarity=0.203 Sum_probs=34.8
Q ss_pred CCCCHHHHHHHHHhcC-----CeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCcccccceeee
Q 024135 118 SSASWQDLKDHMRRAG-----DVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (272)
Q Consensus 118 ~~~~~~~l~~~f~~~G-----~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~ 178 (272)
..++..+|..++...+ .|-.+.+..+ |+||+-... .|..++..|++..+.|+....
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~----~S~vev~~~-~a~~v~~~l~~~~~~gk~v~v 71 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN----FSFVEVPEE-VAEKVLEALNGKKIKGKKVRV 71 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS-----EEEEE-TT--HHHHHHHHTT--SSS----E
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee----EEEEEECHH-HHHHHHHHhcCCCCCCeeEEE
Confidence 4578889999888775 4556777777 889987654 788999999999999955433
No 222
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=85.38 E-value=0.83 Score=38.63 Aligned_cols=67 Identities=21% Similarity=0.283 Sum_probs=50.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeE-EEeec-----CCCCCceEEEEecChHHHHHHHHhcCCcccC
Q 024135 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAH-IDLKI-----PPRPPGYAFVEFEEARDAEDAIRGRDGYDFD 71 (272)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~-v~~~~-----~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~ 71 (272)
.-+.|.|.+||+.+++.+|.+....|-+-.. ..+.. ..+..+.|||.|..+++.......++|..|.
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 4567899999999999999998887653322 22221 1233578999999999999999989987764
No 223
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=82.78 E-value=0.41 Score=44.38 Aligned_cols=27 Identities=7% Similarity=0.005 Sum_probs=13.7
Q ss_pred ccceEEEcCCCCC------CCHHHHHHHHHhcC
Q 024135 107 SEYRVLVTGLPSS------ASWQDLKDHMRRAG 133 (272)
Q Consensus 107 ~~~~~~v~nl~~~------~~~~~l~~~f~~~G 133 (272)
.....|++++... +.++.+.++..-.|
T Consensus 144 ~~qR~f~gvvtk~~DtygfVD~dvffQls~~~g 176 (1194)
T KOG4246|consen 144 EPQRRFAGVVTKQTDTYGFVDQDVFFQLSKMQG 176 (1194)
T ss_pred CcceeeehhhhhhccccccccHHHHHHHHHHhc
Confidence 4456777765432 23455555544444
No 224
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=82.71 E-value=1.2 Score=31.31 Aligned_cols=56 Identities=23% Similarity=0.408 Sum_probs=30.1
Q ss_pred eEEEcCCCCC---------CCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHH-HHHHH
Q 024135 8 TLYVGNLPGD---------IREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDA-EDAIR 63 (272)
Q Consensus 8 ~l~v~nL~~~---------~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a-~~a~~ 63 (272)
++.|-|++.. ++.+.|.+.|..|..++...+.....+.|++.|+|..--.. ..|+.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChHHHHHHHH
Confidence 4567788553 46678999999998886555544445678999999764433 34554
No 225
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=82.46 E-value=0.77 Score=42.77 Aligned_cols=55 Identities=16% Similarity=0.201 Sum_probs=46.9
Q ss_pred CCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCcccc
Q 024135 116 LPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR 172 (272)
Q Consensus 116 l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~ 172 (272)
.+-..+-.-|..+|.+||.|..++...+-. .|.|+|...+.|..|+++++|+++-
T Consensus 306 n~v~~tSssL~~l~s~yg~v~s~wtlr~~N--~alvs~~s~~sai~a~dAl~gkevs 360 (1007)
T KOG4574|consen 306 NAVNLTSSSLATLCSDYGSVASAWTLRDLN--MALVSFSSVESAILALDALQGKEVS 360 (1007)
T ss_pred ccccchHHHHHHHHHhhcchhhheeccccc--chhhhhHHHHHHHHhhhhhcCCccc
Confidence 344556677888999999999999877754 6899999999999999999999874
No 226
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=80.38 E-value=7.8 Score=33.26 Aligned_cols=37 Identities=16% Similarity=0.433 Sum_probs=30.5
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHhhcc----CCeeEEEee
Q 024135 3 SRASRTLYVGNLPGD-IREREVEDLFYKY----GPIAHIDLK 39 (272)
Q Consensus 3 ~~~~~~l~v~nL~~~-~t~~~l~~~F~~~----G~v~~v~~~ 39 (272)
+.+++.|-|-||.|+ +...+|..+|+.| |.|..|.|.
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iy 184 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIY 184 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEec
Confidence 568889999999997 8999999999876 566667664
No 227
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=78.75 E-value=5.2 Score=24.52 Aligned_cols=19 Identities=26% Similarity=0.511 Sum_probs=16.7
Q ss_pred HHHHHHhhccCCeeEEEee
Q 024135 21 REVEDLFYKYGPIAHIDLK 39 (272)
Q Consensus 21 ~~l~~~F~~~G~v~~v~~~ 39 (272)
.+|+++|+..|+|.-+.+.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 5799999999999988873
No 228
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=78.27 E-value=3.8 Score=33.32 Aligned_cols=49 Identities=18% Similarity=0.291 Sum_probs=36.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChH
Q 024135 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEAR 56 (272)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~ 56 (272)
.+-|+++||+.++-..||+..+.+.|-+ -+.|.+.| +.|-||+.|-+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~-pm~iswkg-~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECT-PMSISWKG-HFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCC-ceeEeeec-CCcceeEecCCcc
Confidence 3459999999999999999999887633 23333333 3578999998754
No 229
>PF14893 PNMA: PNMA
Probab=72.81 E-value=4.8 Score=34.02 Aligned_cols=54 Identities=28% Similarity=0.402 Sum_probs=35.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhc-cCCeeEEEe----ecCCCCCceEEEEecC
Q 024135 1 MSSRASRTLYVGNLPGDIREREVEDLFYK-YGPIAHIDL----KIPPRPPGYAFVEFEE 54 (272)
Q Consensus 1 ~~~~~~~~l~v~nL~~~~t~~~l~~~F~~-~G~v~~v~~----~~~~~~~g~afV~f~~ 54 (272)
|.-.+.+.|.|.+||.++++++|.+.+.. +-++-...+ .....+..-|+|+|..
T Consensus 13 m~~~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e 71 (331)
T PF14893_consen 13 MGVDPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAE 71 (331)
T ss_pred cCcChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeeccc
Confidence 44567889999999999999999887753 222222223 1112234478888875
No 230
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=72.72 E-value=20 Score=22.42 Aligned_cols=50 Identities=14% Similarity=0.250 Sum_probs=38.6
Q ss_pred CCCHHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCccccc
Q 024135 119 SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRN 173 (272)
Q Consensus 119 ~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g 173 (272)
.++-++++..+..|+-. .|..+..| =||.|.+..+|+++....++..+.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~---~I~~d~tG--fYIvF~~~~Ea~rC~~~~~~~~~f~ 60 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD---RIRDDRTG--FYIVFNDSKEAERCFRAEDGTLFFT 60 (66)
T ss_pred CccHHHHHHHHhcCCcc---eEEecCCE--EEEEECChHHHHHHHHhcCCCEEEE
Confidence 46789999999988732 33344432 3799999999999999999988765
No 231
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=72.40 E-value=20 Score=23.58 Aligned_cols=55 Identities=15% Similarity=0.244 Sum_probs=40.4
Q ss_pred EEEcCCCCCCCHHHHHHHhhc-cC-CeeEEEeecCCCCCceEEEEecChHHHHHHHH
Q 024135 9 LYVGNLPGDIREREVEDLFYK-YG-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIR 63 (272)
Q Consensus 9 l~v~nL~~~~t~~~l~~~F~~-~G-~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~ 63 (272)
.|+-.+++.++..+|++.++. || .|..|.........--|||.+....+|.....
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ 79 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIAS 79 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHH
Confidence 445567889999999999986 55 56666664444444579999999888887654
No 232
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=72.07 E-value=0.51 Score=41.70 Aligned_cols=67 Identities=18% Similarity=0.212 Sum_probs=51.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecC---CCCCceEEEEecChHHHHHHHHhcCCcccC
Q 024135 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFD 71 (272)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~---~~~~g~afV~f~~~~~a~~a~~~l~g~~~~ 71 (272)
-.|+||+.||+++++..+|..+...+--+..+.+... .....+++|.|.---....|+..||+..+.
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 3578999999999999999999998876666666322 122457899998777777888888887664
No 233
>KOG3580 consensus Tight junction proteins [Signal transduction mechanisms]
Probab=70.51 E-value=26 Score=32.01 Aligned_cols=42 Identities=21% Similarity=0.317 Sum_probs=27.5
Q ss_pred CCCCCccceEEEcCCCCC-CCHHHHHHHHHhcCCeeEEEEEec
Q 024135 102 GVSRRSEYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRD 143 (272)
Q Consensus 102 ~~~~~~~~~~~v~nl~~~-~~~~~l~~~f~~~G~i~~~~~~~~ 143 (272)
+..+.....+.|.++++. ++-.--.+.+.++|++..|.+...
T Consensus 55 G~LQenDrvvMVNGvsMenv~haFAvQqLrksgK~A~ItvkRp 97 (1027)
T KOG3580|consen 55 GLLQENDRVVMVNGVSMENVLHAFAVQQLRKSGKVAAITVKRP 97 (1027)
T ss_pred cccccCCeEEEEcCcchhhhHHHHHHHHHHhhccceeEEeccc
Confidence 344555678888888764 344444556678898887776544
No 234
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=69.22 E-value=2.7 Score=27.95 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=22.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhh
Q 024135 3 SRASRTLYVGNLPGDIREREVEDLFY 28 (272)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~ 28 (272)
+...++|.|.|||..+++++|++.++
T Consensus 49 ~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 49 GVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred cccCCEEEEeCCCCCCChhhheeeEE
Confidence 45788999999999999999997664
No 235
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=68.50 E-value=12 Score=24.69 Aligned_cols=49 Identities=22% Similarity=0.296 Sum_probs=32.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEec
Q 024135 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFE 53 (272)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~ 53 (272)
...-|||||++..+-+.-...+.+..+.-.-+-+..+....||+|-..-
T Consensus 24 i~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~neqG~~~~t~G 72 (86)
T PF09707_consen 24 IRPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDNNEQGFDFRTLG 72 (86)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccCCCCCEEEEEeC
Confidence 4556999999998877665666655554444444444457889988773
No 236
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=68.10 E-value=46 Score=27.34 Aligned_cols=51 Identities=16% Similarity=0.182 Sum_probs=36.4
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCH
Q 024135 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNY 156 (272)
Q Consensus 105 ~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~ 156 (272)
....+-|+++||+.++.-.+|+..+.+-|-+- ..+......+-||+.|.+.
T Consensus 327 a~~~~di~~~nl~rd~rv~dlk~~lr~~~~~p-m~iswkg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 327 AGAKTDIKLTNLSRDIRVKDLKSELRKRECTP-MSISWKGHFGKCFLHFGNR 377 (396)
T ss_pred CccccceeeccCccccchHHHHHHHHhcCCCc-eeEeeecCCcceeEecCCc
Confidence 33456799999999999999999998876432 2222333344799999764
No 237
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=67.33 E-value=33 Score=22.60 Aligned_cols=56 Identities=16% Similarity=0.114 Sum_probs=42.0
Q ss_pred EEEcCCCCCCCHHHHHHHHHh-cC-CeeEEEEEecCCCC-eEEEEeCCHHHHHHHHHHh
Q 024135 111 VLVTGLPSSASWQDLKDHMRR-AG-DVCFSQVFRDGSGT-TGIVDYTNYDDMKHAIKKL 166 (272)
Q Consensus 111 ~~v~nl~~~~~~~~l~~~f~~-~G-~i~~~~~~~~~~~~-~~fv~f~~~~~a~~a~~~l 166 (272)
-|+..++...+..++++.+.. || .|..+....-+.+. -|+|.+..-+.|.+...++
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhh
Confidence 445556778899999999876 66 67777776665542 6999999988888876654
No 238
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.71 E-value=1.1 Score=38.62 Aligned_cols=75 Identities=8% Similarity=-0.105 Sum_probs=57.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEee---cCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEcc
Q 024135 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLK---IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (272)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~---~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (272)
+..-++..||...+++++..+|..||.|..+.+. .++...-.+||.... .+|..+|..+....+.|..+.|.+++
T Consensus 3 s~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 3 SMKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred chhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCc
Confidence 3456788899999999999999999999888873 234445578888776 66777777777777778878777765
No 239
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=66.56 E-value=32 Score=22.21 Aligned_cols=56 Identities=16% Similarity=0.240 Sum_probs=40.0
Q ss_pred eEEEcCCCCCCCHHHHHHHhhc-cC-CeeEEEeecCCCCCceEEEEecChHHHHHHHH
Q 024135 8 TLYVGNLPGDIREREVEDLFYK-YG-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIR 63 (272)
Q Consensus 8 ~l~v~nL~~~~t~~~l~~~F~~-~G-~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~ 63 (272)
.-|+-.++..++..+|++.++. || .|..|.........--|||.+.....|...-.
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~ 72 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIAS 72 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHH
Confidence 3456678899999999998886 44 56666554433444579999988888876544
No 240
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.16 E-value=48 Score=30.13 Aligned_cols=69 Identities=14% Similarity=0.214 Sum_probs=54.2
Q ss_pred CccceEEEcCCCCC-CCHHHHHHHHHhc----CCeeEEEEEecC-------------C----------------------
Q 024135 106 RSEYRVLVTGLPSS-ASWQDLKDHMRRA----GDVCFSQVFRDG-------------S---------------------- 145 (272)
Q Consensus 106 ~~~~~~~v~nl~~~-~~~~~l~~~f~~~----G~i~~~~~~~~~-------------~---------------------- 145 (272)
.....|.|.|+.++ +...+|.-+|+.| |.|..|.|.... +
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 45678999999997 5889998888754 478777765331 0
Q ss_pred -------C---------CeEEEEeCCHHHHHHHHHHhcCcccccc
Q 024135 146 -------G---------TTGIVDYTNYDDMKHAIKKLDDSEFRNA 174 (272)
Q Consensus 146 -------~---------~~~fv~f~~~~~a~~a~~~l~~~~~~g~ 174 (272)
. -||.|+|.+.+.|......++|.++...
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS 296 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESS 296 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccc
Confidence 0 1799999999999999999999999763
No 241
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=65.88 E-value=33 Score=22.14 Aligned_cols=57 Identities=14% Similarity=0.093 Sum_probs=42.3
Q ss_pred eEEEcCCCCCCCHHHHHHHHHh-cC-CeeEEEEEecCCCC-eEEEEeCCHHHHHHHHHHh
Q 024135 110 RVLVTGLPSSASWQDLKDHMRR-AG-DVCFSQVFRDGSGT-TGIVDYTNYDDMKHAIKKL 166 (272)
Q Consensus 110 ~~~v~nl~~~~~~~~l~~~f~~-~G-~i~~~~~~~~~~~~-~~fv~f~~~~~a~~a~~~l 166 (272)
.-|+..++...+..+|+..+.. || .|..+....-+.+. -|||.+..-+.|.+...++
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHHhh
Confidence 3456667888999999999876 56 67777766665442 6999999888888776654
No 242
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=63.56 E-value=9.6 Score=30.92 Aligned_cols=66 Identities=23% Similarity=0.458 Sum_probs=45.7
Q ss_pred CCCeEEEcCCCCC------------CCHHHHHHHhhccCCeeEEEeec--------CCCC-----Cce---------EEE
Q 024135 5 ASRTLYVGNLPGD------------IREREVEDLFYKYGPIAHIDLKI--------PPRP-----PGY---------AFV 50 (272)
Q Consensus 5 ~~~~l~v~nL~~~------------~t~~~l~~~F~~~G~v~~v~~~~--------~~~~-----~g~---------afV 50 (272)
-+.|||+.+||.. -+++-|...|+.||+|..|.|+. +++. .|| |||
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayv 227 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYV 227 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHH
Confidence 4568999999874 25677999999999999998843 1221 233 456
Q ss_pred EecChHHHHHHHHhcCCccc
Q 024135 51 EFEEARDAEDAIRGRDGYDF 70 (272)
Q Consensus 51 ~f~~~~~a~~a~~~l~g~~~ 70 (272)
+|-....-..|+..|.|..+
T Consensus 228 qfmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 228 QFMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHHhHHHHHHHHhcchH
Confidence 66655666677777777655
No 243
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.74 E-value=29 Score=29.91 Aligned_cols=55 Identities=9% Similarity=0.074 Sum_probs=44.6
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCC-eeEEEEEecCCCCeEEEEeCCHHHHHHHHHH
Q 024135 108 EYRVLVTGLPSSASWQDLKDHMRRAGD-VCFSQVFRDGSGTTGIVDYTNYDDMKHAIKK 165 (272)
Q Consensus 108 ~~~~~v~nl~~~~~~~~l~~~f~~~G~-i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~ 165 (272)
...|-|.++|.....++|...|..|+. -..|.++.+. .+|..|.+...|..|+..
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt---halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT---HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc---eeEEeecchHHHHHHhhc
Confidence 457889999999999999999999974 3346666554 688999999999999983
No 244
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=55.10 E-value=30 Score=29.08 Aligned_cols=55 Identities=22% Similarity=0.180 Sum_probs=36.0
Q ss_pred EEEEecChHHHHHHHHhcCCcccCCceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHH
Q 024135 48 AFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKD 127 (272)
Q Consensus 48 afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~ 127 (272)
|||.|.++.+|..|.+.+.... +..+.+..|.++ .-|.-.||.....+..++.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP-------------------------~DI~W~NL~~~~~~r~~R~ 53 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEP-------------------------DDIIWENLSISSKQRFLRR 53 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCc-------------------------ccccccccCCChHHHHHHH
Confidence 7999999999999999554433 244566665432 2455677766666655555
Q ss_pred HH
Q 024135 128 HM 129 (272)
Q Consensus 128 ~f 129 (272)
.+
T Consensus 54 ~~ 55 (325)
T PF02714_consen 54 II 55 (325)
T ss_pred HH
Confidence 43
No 245
>KOG2812 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.68 E-value=16 Score=30.80 Aligned_cols=10 Identities=30% Similarity=0.215 Sum_probs=3.9
Q ss_pred CCCCCccccc
Q 024135 253 SKPRSLSRWA 262 (272)
Q Consensus 253 srsrs~~r~~ 262 (272)
+|+.++.+..
T Consensus 88 sRs~sr~r~s 97 (426)
T KOG2812|consen 88 SRSPSRDRES 97 (426)
T ss_pred ccCCCccccc
Confidence 3334443333
No 246
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=54.53 E-value=26 Score=23.77 Aligned_cols=51 Identities=20% Similarity=0.227 Sum_probs=31.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecCh
Q 024135 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEA 55 (272)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~ 55 (272)
...-||||+++..+-+.--..+-+.++.=.-+-+..+....||+|-.+-+.
T Consensus 26 v~~GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~~~~~eqG~~~~t~G~~ 76 (97)
T PRK11558 26 VRAGVYVGDVSRRIREMIWQQVTQLAEEGNVVMAWATNTESGFEFQTFGEN 76 (97)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEEcCCCCCCcEEEecCCC
Confidence 345699999988876654444444454333333334445568998877653
No 247
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=53.92 E-value=33 Score=22.48 Aligned_cols=36 Identities=36% Similarity=0.476 Sum_probs=24.9
Q ss_pred CeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcc
Q 024135 32 PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYD 69 (272)
Q Consensus 32 ~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~ 69 (272)
.|.++.. .+..+||-|||=.++.++..|+..+.+..
T Consensus 33 ~I~Si~~--~~~lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 33 NIYSIFA--PDSLKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp ---EEEE---TTSTSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred ceEEEEE--eCCCceEEEEEeCCHHHHHHHHhccccee
Confidence 3444433 34578999999999999999999777643
No 248
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=53.70 E-value=13 Score=29.53 Aligned_cols=35 Identities=14% Similarity=0.253 Sum_probs=30.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEe
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDL 38 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~ 38 (272)
....+||+-|||...|++.|..+.+++|.+..+.+
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y 72 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLY 72 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhhheec
Confidence 45678999999999999999999999997666554
No 249
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=53.59 E-value=19 Score=27.34 Aligned_cols=46 Identities=17% Similarity=0.151 Sum_probs=32.5
Q ss_pred CCHHHHHHHhhcc-CCeeEEEeec--CC--CCCceEEEEecChHHHHHHHH
Q 024135 18 IREREVEDLFYKY-GPIAHIDLKI--PP--RPPGYAFVEFEEARDAEDAIR 63 (272)
Q Consensus 18 ~t~~~l~~~F~~~-G~v~~v~~~~--~~--~~~g~afV~f~~~~~a~~a~~ 63 (272)
.|+++|..+...- |.+..|.+.. ++ ..+|-.||.|...+.|.+++.
T Consensus 118 ~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~ 168 (205)
T KOG4213|consen 118 ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDD 168 (205)
T ss_pred CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhh
Confidence 4555555554422 6888888833 22 457899999999999988777
No 250
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=52.68 E-value=64 Score=23.72 Aligned_cols=56 Identities=16% Similarity=0.223 Sum_probs=36.8
Q ss_pred eEEEcCCCCCCCHHHHHHHhhc-cC-CeeEEEeecCCCCCceEEEEecChHHHHHHHH
Q 024135 8 TLYVGNLPGDIREREVEDLFYK-YG-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIR 63 (272)
Q Consensus 8 ~l~v~nL~~~~t~~~l~~~F~~-~G-~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~ 63 (272)
..|+--+...++..+|.+.++. |+ .|..|.........--|||.+....+|.....
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~KKA~V~L~~~~~aidva~ 140 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLKKAYIRLSPDVDALDVAN 140 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCceEEEEEECCCCcHHHHHH
Confidence 3445567789999999998886 44 45555443333334479999988777665443
No 251
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=51.75 E-value=21 Score=30.58 Aligned_cols=64 Identities=16% Similarity=0.317 Sum_probs=47.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCC-eeEEEEEecCCC------CeEEEEeCCHHHHHHHHHHhcCcccc
Q 024135 109 YRVLVTGLPSSASWQDLKDHMRRAGD-VCFSQVFRDGSG------TTGIVDYTNYDDMKHAIKKLDDSEFR 172 (272)
Q Consensus 109 ~~~~v~nl~~~~~~~~l~~~f~~~G~-i~~~~~~~~~~~------~~~fv~f~~~~~a~~a~~~l~~~~~~ 172 (272)
..+.|..||+..++++|.+....+-. +....+..+..+ +.++|.|..+++...-...++|..+-
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 57888999999999999998888763 333333322211 26899999999988888888886654
No 252
>PF15063 TC1: Thyroid cancer protein 1
Probab=51.07 E-value=10 Score=24.14 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=21.8
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCee
Q 024135 9 LYVGNLPGDIREREVEDLFYKYGPIA 34 (272)
Q Consensus 9 l~v~nL~~~~t~~~l~~~F~~~G~v~ 34 (272)
--+.||-.+++.++|..||..-|..+
T Consensus 28 kasaNIFe~vn~~qlqrLF~~sGD~k 53 (79)
T PF15063_consen 28 KASANIFENVNLDQLQRLFQKSGDKK 53 (79)
T ss_pred hhhhhhhhccCHHHHHHHHHHccchh
Confidence 34678889999999999999998653
No 253
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=49.65 E-value=12 Score=33.43 Aligned_cols=73 Identities=30% Similarity=0.487 Sum_probs=47.3
Q ss_pred EcCCCCCCCHHHHHHHhhc-cCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEccCCCC
Q 024135 11 VGNLPGDIREREVEDLFYK-YGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRG 85 (272)
Q Consensus 11 v~nL~~~~t~~~l~~~F~~-~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~~~ 85 (272)
+-++|..+-..++...+.. ++....- ..-.....|+++.|++++.+.+|+..++|..+.+..+.+..+.....
T Consensus 30 ~e~~~~~~~q~~~~k~~~~~~~~~~s~--tk~~~~~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~~~~~~ 103 (534)
T KOG2187|consen 30 IEMIPTFIGQKQLNKVLLKILRDVKSK--TKLPKMPKYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLGATEVG 103 (534)
T ss_pred eeccCchhhhhHHHhhhhhhccccccc--CCCCCCCCceEEEEeccchhhhHHHHHhhhhhhcchhhhhhcccccc
Confidence 3345555555444443333 2222211 11123356999999999999999999999999998888887765443
No 254
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=46.43 E-value=16 Score=19.65 Aligned_cols=17 Identities=18% Similarity=0.372 Sum_probs=10.4
Q ss_pred CCCCHHHHHHHhhccCC
Q 024135 16 GDIREREVEDLFYKYGP 32 (272)
Q Consensus 16 ~~~t~~~l~~~F~~~G~ 32 (272)
.++++++|++.|.+.+.
T Consensus 19 ~Dtd~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIKK 35 (36)
T ss_dssp S---HHHHHHHHHCS--
T ss_pred ccCCHHHHHHHHHHhcc
Confidence 46889999999987653
No 255
>PF02829 3H: 3H domain; InterPro: IPR004173 The 3H domain is named after its three highly conserved histidine residues. The 3H domain appears to be a small molecule-binding domain, based on its occurrence with other domains []. Several proteins carrying this domain are transcriptional regulators from the biotin repressor family. The transcription regulator TM1602 from Thermotoga maritima is a DNA-binding protein thought to belong to a family of de novo NAD synthesis pathway regulators. TM1602 has an N-terminal DNA-binding domain and a C-terminal 3H regulatory domain. The N-terminal domain appears to bind to the NAD promoter region and repress the de novo NAD biosynthesis operon, while the C-terminal 3H domain may bind to nicotinamide, nicotinic acid, or other substrate/products []. The 3H domain has a 2-layer alpha/beta sandwich fold.; GO: 0005488 binding; PDB: 1J5Y_A.
Probab=46.34 E-value=59 Score=22.15 Aligned_cols=50 Identities=16% Similarity=0.122 Sum_probs=37.0
Q ss_pred CCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCC
Q 024135 18 IREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDG 67 (272)
Q Consensus 18 ~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g 67 (272)
-.+++|..+...-|.|.+|.+..+....=-|.+...+..++...+..|+.
T Consensus 9 ~~~~EL~~IVd~Gg~V~DV~veHp~YG~i~~~L~i~sr~Dv~~Fi~~l~~ 58 (98)
T PF02829_consen 9 EIEDELEIIVDNGGRVLDVIVEHPVYGEITGNLNISSRRDVDKFIEKLEK 58 (98)
T ss_dssp GHHHHHHHHHHTT-EEEEEEEEETTTEEEEEEEEE-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEEEeCCCCcEEEEEEecCCHHHHHHHHHHHhc
Confidence 34567777777778999999966554444678889999999999998764
No 256
>KOG2146 consensus Splicing coactivator SRm160/300, subunit SRm160 (contains PWI domain) [RNA processing and modification; General function prediction only]
Probab=45.30 E-value=82 Score=25.97 Aligned_cols=30 Identities=13% Similarity=0.264 Sum_probs=13.1
Q ss_pred EEEecChHHHHHHHHhcCC-cccCCceEEEE
Q 024135 49 FVEFEEARDAEDAIRGRDG-YDFDGHRLRVE 78 (272)
Q Consensus 49 fV~f~~~~~a~~a~~~l~g-~~~~g~~i~v~ 78 (272)
+|-|++.--++-.+..|.. ..++-+.++|+
T Consensus 56 ilgfEDdVViefvynqLee~k~ldpkkmQiN 86 (354)
T KOG2146|consen 56 ILGFEDDVVIEFVYNQLEEAKNLDPKKMQIN 86 (354)
T ss_pred hhccccchhHHHHHHHHhhhcCCCchheeee
Confidence 4455554333334444443 33444444443
No 257
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=44.84 E-value=77 Score=19.85 Aligned_cols=59 Identities=22% Similarity=0.359 Sum_probs=39.4
Q ss_pred HHHHHHhhccC-CeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEccC
Q 024135 21 REVEDLFYKYG-PIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (272)
Q Consensus 21 ~~l~~~F~~~G-~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~ 82 (272)
++|.+.|...| +|..+.-+. +..+...-||+.....+..++ ++=..+++..|.|+....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i---~~Ik~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI---YKIKTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce---eehHhhCCeEEEEecCCC
Confidence 57888888888 566555432 345567888888876653333 445677888999987653
No 258
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=44.55 E-value=76 Score=26.31 Aligned_cols=56 Identities=5% Similarity=0.094 Sum_probs=45.0
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecC-----------CCCeEEEEeCCHHHHHHH
Q 024135 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG-----------SGTTGIVDYTNYDDMKHA 162 (272)
Q Consensus 107 ~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~-----------~~~~~fv~f~~~~~a~~a 162 (272)
....|...|+...++.-.+...|-+||.|+.|.++.+. ......+.|-+.+.+..-
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdF 80 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDF 80 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHH
Confidence 44578889999999999999999999999999999775 112577888887766544
No 259
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=44.54 E-value=42 Score=22.26 Aligned_cols=50 Identities=22% Similarity=0.284 Sum_probs=28.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhc-cCCeeEEEeecCCCCCceEEEEecC
Q 024135 5 ASRTLYVGNLPGDIREREVEDLFYK-YGPIAHIDLKIPPRPPGYAFVEFEE 54 (272)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~-~G~v~~v~~~~~~~~~g~afV~f~~ 54 (272)
...-||||+++..+-+.--..+-+. .++=.-+-+..+....||+|-.+-+
T Consensus 24 v~~GVyVg~~s~rVRe~lW~~v~~~~~~~G~avm~~~~~~e~G~~~~t~G~ 74 (87)
T TIGR01873 24 PRAGVYVGGVSASVRERIWDYLAQHCPPKGSLVITWSSNTCPGFEFFTLGE 74 (87)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHHhCCCCccEEEEEeCCCCCCcEEEecCC
Confidence 3456999999888765433333333 2332222233445567888877654
No 260
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=42.75 E-value=95 Score=20.98 Aligned_cols=55 Identities=20% Similarity=0.347 Sum_probs=33.4
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcc--------CCeeEEEe--------ecCCCCCc-eEEEEecChHHHHHHHHh
Q 024135 8 TLYVGNLPGDIREREVEDLFYKY--------GPIAHIDL--------KIPPRPPG-YAFVEFEEARDAEDAIRG 64 (272)
Q Consensus 8 ~l~v~nL~~~~t~~~l~~~F~~~--------G~v~~v~~--------~~~~~~~g-~afV~f~~~~~a~~a~~~ 64 (272)
++|| |.++++++++..+.+.+ |.|..+.- ...+...| |.++.|.-..++.+.+..
T Consensus 10 ~~~I--l~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~eler 81 (97)
T CHL00123 10 TMYL--LKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLEK 81 (97)
T ss_pred EEEE--ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHHH
Confidence 3444 56777787766654443 46665553 22344556 678888877777776663
No 261
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=42.35 E-value=89 Score=19.86 Aligned_cols=45 Identities=20% Similarity=0.261 Sum_probs=32.1
Q ss_pred HHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhc
Q 024135 122 WQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLD 167 (272)
Q Consensus 122 ~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~ 167 (272)
-.++.+.+.++| +..+.+.-...+++.|+-+.+.+.+.++.+.+.
T Consensus 36 i~~~~~~~~~~G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 36 IDELKEAAEENG-ALGAKMSGSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHHTT-ESEEEEETTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC-CCceecCCCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 456777778888 445555444445688888889999888888764
No 262
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=42.05 E-value=75 Score=18.90 Aligned_cols=53 Identities=15% Similarity=0.220 Sum_probs=40.6
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecCh----HHHHHHHH
Q 024135 8 TLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEA----RDAEDAIR 63 (272)
Q Consensus 8 ~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~----~~a~~a~~ 63 (272)
|+.|.||....-...|.+.+...-.|.++.+... .+-+-|.|... ++..+++.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~---~~~v~v~~~~~~~~~~~i~~~i~ 57 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLE---TKTVTVTYDPDKTSIEKIIEAIE 57 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETT---TTEEEEEESTTTSCHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECC---CCEEEEEEecCCCCHHHHHHHHH
Confidence 6788899888888999999999988998888633 45788888754 44555555
No 263
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=40.64 E-value=1.3e+02 Score=22.15 Aligned_cols=58 Identities=14% Similarity=0.116 Sum_probs=40.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHh-cC-CeeEEEEEecCCCC-eEEEEeCCHHHHHHHHHHh
Q 024135 109 YRVLVTGLPSSASWQDLKDHMRR-AG-DVCFSQVFRDGSGT-TGIVDYTNYDDMKHAIKKL 166 (272)
Q Consensus 109 ~~~~v~nl~~~~~~~~l~~~f~~-~G-~i~~~~~~~~~~~~-~~fv~f~~~~~a~~a~~~l 166 (272)
..-|+..++...+..+|++.++. |+ .|..|....-+.+. -|||.+....+|.+...++
T Consensus 82 ~N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~KKA~V~L~~~~~aidva~ki 142 (145)
T PTZ00191 82 NNTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLKKAYIRLSPDVDALDVANKI 142 (145)
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCceEEEEEECCCCcHHHHHHhh
Confidence 35666677888999999999976 55 56666666555442 6999997777766555443
No 264
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=39.20 E-value=1.3e+02 Score=22.18 Aligned_cols=33 Identities=39% Similarity=0.478 Sum_probs=24.7
Q ss_pred eeEEEeecCCCCCceEEEEecChHHHHHHHHhcCC
Q 024135 33 IAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDG 67 (272)
Q Consensus 33 v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g 67 (272)
|.++.++ ...+||.||+....+++..++..+.+
T Consensus 36 i~~i~vp--~~fpGYVfVe~~~~~~~~~~i~~v~~ 68 (153)
T PRK08559 36 IYAILAP--PELKGYVLVEAESKGAVEEAIRGIPH 68 (153)
T ss_pred EEEEEcc--CCCCcEEEEEEEChHHHHHHHhcCCC
Confidence 4455443 34689999999988888888887655
No 265
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=38.92 E-value=1e+02 Score=19.48 Aligned_cols=58 Identities=22% Similarity=0.344 Sum_probs=38.9
Q ss_pred HHHHHHhhccC-CeeEEEeecC---CCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEcc
Q 024135 21 REVEDLFYKYG-PIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (272)
Q Consensus 21 ~~l~~~F~~~G-~v~~v~~~~~---~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (272)
.+|.+.|..+| ++..+.-+.. ..+...-||+.....+... .|+=..|+|+.+.|+-..
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 46888898888 5666665432 3445677888776554444 355567889999988654
No 266
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=38.78 E-value=80 Score=18.28 Aligned_cols=42 Identities=19% Similarity=0.298 Sum_probs=28.4
Q ss_pred HHHHHHhhccC-CeeEEEeecCCCCCceEEEEecChHHHHHHH
Q 024135 21 REVEDLFYKYG-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAI 62 (272)
Q Consensus 21 ~~l~~~F~~~G-~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~ 62 (272)
.+|..+|...| .|..+.+.......+...+.+.+.+.|.+++
T Consensus 13 ~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 13 AEVTEILAEAGINIKAISIAETRGEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred HHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECCHHHHHHHh
Confidence 45667777665 6777776544345667777788877777665
No 267
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=37.63 E-value=1.1e+02 Score=28.61 Aligned_cols=60 Identities=12% Similarity=0.149 Sum_probs=47.3
Q ss_pred CCCHHHHHHHhhccCCeeE-----EEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEccC
Q 024135 17 DIREREVEDLFYKYGPIAH-----IDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (272)
Q Consensus 17 ~~t~~~l~~~F~~~G~v~~-----v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~ 82 (272)
.++..+|..++..-+.|.. |.|. ..|.||+... +.|...+..|++..+.|+.|.|+.+..
T Consensus 498 ~~~~~~~~~~i~~~~~~~~~~ig~i~i~-----~~~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (629)
T PRK11634 498 GVEVRHIVGAIANEGDISSRYIGNIKLF-----ASHSTIELPK-GMPGEVLQHFTRTRILNKPMNMQLLGD 562 (629)
T ss_pred CCCHHHHHHHHHhhcCCChhhCCcEEEe-----CCceEEEcCh-hhHHHHHHHhccccccCCceEEEECCC
Confidence 5888899888887665543 3333 3589999986 668888999999999999999998753
No 268
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=37.46 E-value=30 Score=26.35 Aligned_cols=64 Identities=13% Similarity=0.162 Sum_probs=43.2
Q ss_pred ceEEEcCCCCCCC-----HHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCcccccc
Q 024135 109 YRVLVTGLPSSAS-----WQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNA 174 (272)
Q Consensus 109 ~~~~v~nl~~~~~-----~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~ 174 (272)
.++.+++++..+- ......+|.+|.+....++++.. +..-|.|.+++.|..|.-+++...+.|+
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsf--rrvRi~f~~p~~a~~a~i~~~~~~f~~~ 79 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSF--RRVRINFSNPEAAADARIKLHSTSFNGK 79 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhh--ceeEEeccChhHHHHHHHHhhhcccCCC
Confidence 4577777776542 23344556655554444333331 2466899999999999999999999986
No 269
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=35.35 E-value=50 Score=20.81 Aligned_cols=28 Identities=18% Similarity=0.175 Sum_probs=22.7
Q ss_pred ceEEEEecChHHHHHHHHhcCCcccCCc
Q 024135 46 GYAFVEFEEARDAEDAIRGRDGYDFDGH 73 (272)
Q Consensus 46 g~afV~f~~~~~a~~a~~~l~g~~~~g~ 73 (272)
.+++|.|.+..+|.+|-..|....+..+
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~~ 29 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPVR 29 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcEE
Confidence 3789999999999999998877655443
No 270
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=33.45 E-value=1.4e+02 Score=19.98 Aligned_cols=64 Identities=11% Similarity=0.240 Sum_probs=40.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhh-ccC-CeeEEEeecCCCC----CceEEEEecChHHHHHHHHhcCC
Q 024135 3 SRASRTLYVGNLPGDIREREVEDLFY-KYG-PIAHIDLKIPPRP----PGYAFVEFEEARDAEDAIRGRDG 67 (272)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~-~~G-~v~~v~~~~~~~~----~g~afV~f~~~~~a~~a~~~l~g 67 (272)
++.+++||. +|...++-..|.+.|+ ..| ...++.+..+|.. +.=+=+.|++-+..++....+-|
T Consensus 31 ~qd~telfF-kiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEav~eQvGG 100 (103)
T COG5227 31 DQDGTELFF-KIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAVTEQVGG 100 (103)
T ss_pred cCCCCEEEE-EEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHHHHHHhcC
Confidence 456777776 7888888899999998 456 3555666444321 12244566776666666555444
No 271
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=33.42 E-value=29 Score=27.65 Aligned_cols=32 Identities=16% Similarity=0.152 Sum_probs=27.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEE
Q 024135 109 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQV 140 (272)
Q Consensus 109 ~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~ 140 (272)
.++|+-|+|..++++.|..+..++|.+..+..
T Consensus 41 d~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y 72 (261)
T KOG4008|consen 41 DCLFLVNVPLLSTEEHLKRFVSQLGHVQELLY 72 (261)
T ss_pred cceeeecccccccHHHHHHHHHHhhhhhheec
Confidence 58999999999999999999999997665443
No 272
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=33.36 E-value=1e+02 Score=27.92 Aligned_cols=59 Identities=22% Similarity=0.317 Sum_probs=43.1
Q ss_pred EEcCCCCCCCH---HHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceE
Q 024135 10 YVGNLPGDIRE---REVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRL 75 (272)
Q Consensus 10 ~v~nL~~~~t~---~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i 75 (272)
+||||+.-... .-+..+-.+||+|-.+.+- ..-.|...+.+.|.+|+. -|+..+.+++.
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG------~~~~Vviss~~~akE~l~-~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLG------SVPVVVISSYEAAKEVLV-KQDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEec------CceEEEECCHHHHHHHHH-hCCccccCCCC
Confidence 46777654333 4456666689999988772 123788889999999999 78999998875
No 273
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=32.92 E-value=1.1e+02 Score=20.51 Aligned_cols=54 Identities=11% Similarity=0.006 Sum_probs=34.6
Q ss_pred cCCCCCCCHHHHHHHhhccCCe-eEEEeecCCCCCceEEEEecChHHHHHHHHhcC
Q 024135 12 GNLPGDIREREVEDLFYKYGPI-AHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRD 66 (272)
Q Consensus 12 ~nL~~~~t~~~l~~~F~~~G~v-~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~ 66 (272)
--+.+.++...|...|-.-|.- +-..+. ...=+.+|-|.|.+.+.+..|++.|-
T Consensus 18 YS~~p~l~~~~i~~Q~~~~gkk~~pp~lR-kD~W~pm~vv~f~~~~~g~~~yq~Lr 72 (91)
T PF12829_consen 18 YSQTPNLDNNQILKQFPFPGKKNKPPSLR-KDYWRPMCVVNFPNYEVGVSAYQKLR 72 (91)
T ss_pred EecCcccChhHHHHhccCCCcccCCchhc-cccceEeEEEECCChHHHHHHHHHHH
Confidence 3456678888888777655521 111111 01124699999999999999988664
No 274
>PRK11901 hypothetical protein; Reviewed
Probab=32.01 E-value=2e+02 Score=24.34 Aligned_cols=59 Identities=15% Similarity=0.247 Sum_probs=36.8
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC---CCeEEE--EeCCHHHHHHHHHHhcCcc
Q 024135 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIV--DYTNYDDMKHAIKKLDDSE 170 (272)
Q Consensus 108 ~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~---~~~~fv--~f~~~~~a~~a~~~l~~~~ 170 (272)
.++|-|..+ ..++.|..+..+++ +..++++.... .+|..| .|.+.++|..|+..|-...
T Consensus 245 ~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa~l 308 (327)
T PRK11901 245 HYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPAEV 308 (327)
T ss_pred CeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCHHH
Confidence 344444443 45777888877776 33344544432 235443 7889999999999876543
No 275
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=31.14 E-value=55 Score=23.84 Aligned_cols=32 Identities=19% Similarity=0.164 Sum_probs=27.3
Q ss_pred EEEcCCCCC-CCHHHHHHHhhccCCeeEEEeec
Q 024135 9 LYVGNLPGD-IREREVEDLFYKYGPIAHIDLKI 40 (272)
Q Consensus 9 l~v~nL~~~-~t~~~l~~~F~~~G~v~~v~~~~ 40 (272)
|.|.|||.. .+++-|..+.+.+|++..+....
T Consensus 107 Vri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t 139 (153)
T PF14111_consen 107 VRIYGLPLHLWSEEILKAIGSKIGEPIEVDENT 139 (153)
T ss_pred hhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCC
Confidence 667899998 78888999999999999998753
No 276
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=30.84 E-value=16 Score=22.92 Aligned_cols=39 Identities=23% Similarity=0.234 Sum_probs=26.3
Q ss_pred HHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcC
Q 024135 21 REVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRD 66 (272)
Q Consensus 21 ~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~ 66 (272)
++|.+.|..++....+. +-.+|..|.+.++|..++..+.
T Consensus 27 ~~v~~~~~~~~~f~k~v-------kL~aF~pF~s~~~ALe~~~ais 65 (67)
T PF08156_consen 27 EEVQKSFSDPEKFSKIV-------KLKAFSPFKSAEEALENANAIS 65 (67)
T ss_pred HHHHHHHcCHHHHhhhh-------hhhhccCCCCHHHHHHHHHHhh
Confidence 57777777654433322 1258999999999988776543
No 277
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=30.81 E-value=75 Score=25.97 Aligned_cols=27 Identities=26% Similarity=0.112 Sum_probs=22.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCe
Q 024135 7 RTLYVGNLPGDIREREVEDLFYKYGPI 33 (272)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~v 33 (272)
....|+|||++++..-|..++...-.+
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~~~~~ 122 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEEKFII 122 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhccCcc
Confidence 456799999999999999999765444
No 278
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=30.07 E-value=2.1e+02 Score=20.52 Aligned_cols=71 Identities=14% Similarity=0.043 Sum_probs=49.1
Q ss_pred CCCeEEEcCCCCC---CCHHHHHHHhhccC-CeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEc
Q 024135 5 ASRTLYVGNLPGD---IREREVEDLFYKYG-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (272)
Q Consensus 5 ~~~~l~v~nL~~~---~t~~~l~~~F~~~G-~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (272)
+...|.|...... .+...|.+.+..-| .++.+... .+...|.|.+.++-.+|...|....=.+-.|.+..+
T Consensus 34 edpavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~-----~~~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl~ 108 (127)
T PRK10629 34 QESTLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPE-----NDSLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQDD 108 (127)
T ss_pred CCceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEee-----CCEEEEEECCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 4556777766444 56677888888777 45555543 347899999999999998877765544555655554
No 279
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=29.32 E-value=1.9e+02 Score=19.88 Aligned_cols=42 Identities=14% Similarity=0.233 Sum_probs=26.8
Q ss_pred HHHHHHhhccCCeeEEEeec-CCCCCceEEEEecChHHHHHHHH
Q 024135 21 REVEDLFYKYGPIAHIDLKI-PPRPPGYAFVEFEEARDAEDAIR 63 (272)
Q Consensus 21 ~~l~~~F~~~G~v~~v~~~~-~~~~~g~afV~f~~~~~a~~a~~ 63 (272)
.+|..++..+| |..-.|.. ...+.-|||+++.+.+..-+++.
T Consensus 27 PE~~a~lk~ag-i~nYSIfLde~~n~lFgy~E~~d~~a~m~~~a 69 (105)
T COG3254 27 PELLALLKEAG-IRNYSIFLDEEENLLFGYWEYEDFEADMAKMA 69 (105)
T ss_pred HHHHHHHHHcC-CceeEEEecCCcccEEEEEEEcChHHHHHHHh
Confidence 35777888887 44444433 33456699999996665555544
No 280
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=29.09 E-value=1.2e+02 Score=20.66 Aligned_cols=46 Identities=24% Similarity=0.375 Sum_probs=27.1
Q ss_pred eEEEcCCCCCCCHHHH---HHHhhccCCeeEEEe-----ecCCCCCceEEEEec
Q 024135 8 TLYVGNLPGDIREREV---EDLFYKYGPIAHIDL-----KIPPRPPGYAFVEFE 53 (272)
Q Consensus 8 ~l~v~nL~~~~t~~~l---~~~F~~~G~v~~v~~-----~~~~~~~g~afV~f~ 53 (272)
..|+.|||.++.+.++ +..|..++.-..|.. .......|++.+-+.
T Consensus 12 ~a~~a~lp~~va~R~~~~a~~~L~~~~~~v~i~~d~~~~~~~~~~~G~gi~l~a 65 (103)
T PF05189_consen 12 IAFVAGLPSSVAERMANAARKRLNWYGPDVEIETDYRESDDSAFGPGSGISLVA 65 (103)
T ss_dssp EEEEESS-CHHHHHHHHHHHHHHCTTCSEEEEEEEEE-CCCCGCSSEEEEEEEE
T ss_pred EEEEcCCCHHHHHHHHHHHHHHhhhhCCCeEEEEecccCccCCCCCceEEEEEE
Confidence 3588999999888775 445555654455554 223445566555444
No 281
>COG5507 Uncharacterized conserved protein [Function unknown]
Probab=27.63 E-value=59 Score=21.99 Aligned_cols=21 Identities=10% Similarity=0.199 Sum_probs=17.4
Q ss_pred CceEEEEecChHHHHHHHHhc
Q 024135 45 PGYAFVEFEEARDAEDAIRGR 65 (272)
Q Consensus 45 ~g~afV~f~~~~~a~~a~~~l 65 (272)
--|.+++|.+.+...+|++.+
T Consensus 66 VvFsW~~Y~skq~rDA~~~km 86 (117)
T COG5507 66 VVFSWIEYPSKQVRDAANAKM 86 (117)
T ss_pred EEEEEEEcCchhHHHHHHHHh
Confidence 358999999999988888754
No 282
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=27.37 E-value=12 Score=33.53 Aligned_cols=68 Identities=13% Similarity=0.117 Sum_probs=50.2
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CCeEEEEeCCHHHHHHHHHHhcCccccc
Q 024135 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRN 173 (272)
Q Consensus 106 ~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~~~~~~g 173 (272)
...+.+++.|++++++-.+|..+++.+-.+..+.+-.... ..+++|+|.---....|+.+||+..+..
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 4567899999999999999999999886665554433321 1268899987777777777777766654
No 283
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=26.82 E-value=2.2e+02 Score=25.83 Aligned_cols=48 Identities=17% Similarity=0.230 Sum_probs=34.7
Q ss_pred CHHHHHHHhh----ccCCeeEEEeecC--CCCCceEEEEecChHHHHHHHHhcC
Q 024135 19 REREVEDLFY----KYGPIAHIDLKIP--PRPPGYAFVEFEEARDAEDAIRGRD 66 (272)
Q Consensus 19 t~~~l~~~F~----~~G~v~~v~~~~~--~~~~g~afV~f~~~~~a~~a~~~l~ 66 (272)
+.-+|..+|. .+|-|..+.+... +......++.|.+.++|..|+..+.
T Consensus 202 ~g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 202 PGFDLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred CccchHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHH
Confidence 3456777765 6788988888443 2334577889999999999988754
No 284
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=26.68 E-value=35 Score=20.47 Aligned_cols=37 Identities=22% Similarity=0.322 Sum_probs=18.2
Q ss_pred CCCceEEEEecC-hHHHHHHHHhcCCcccCCceEEEEEc
Q 024135 43 RPPGYAFVEFEE-ARDAEDAIRGRDGYDFDGHRLRVELA 80 (272)
Q Consensus 43 ~~~g~afV~f~~-~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (272)
.+.|||||...+ .++.--.-..|++.+-++ .+.|...
T Consensus 6 ~~~GfGFv~~~~~~~DifIp~~~l~~A~~gD-~V~v~i~ 43 (58)
T PF08206_consen 6 HPKGFGFVIPDDGGEDIFIPPRNLNGAMDGD-KVLVRIT 43 (58)
T ss_dssp -SSS-EEEEECT-TEEEEE-HHHHTTS-TT--EEEEEEE
T ss_pred EcCCCEEEEECCCCCCEEECHHHHCCCCCCC-EEEEEEe
Confidence 357999999887 333333334455544334 4444443
No 285
>PF00937 Corona_nucleoca: Coronavirus nucleocapsid protein; InterPro: IPR001218 The entry represents the Coronavirus nucleocapsid protein. Sequence comparison of the N genes of five strains of the coronavirus Murine hepatitis virus suggests a three domain structure for the nucleocapsid protein []. There seems to be a specific interaction between the coronavirus Mouse hepatitis virus A59 nucleocapsid protein and packaging signal [].; GO: 0019013 viral nucleocapsid; PDB: 2GE7_A 2GEC_A 2GE8_B 2BXX_B 2BTL_A 2CA1_B 3HD4_A 2C86_A 2CJR_F 2OG3_A ....
Probab=26.39 E-value=23 Score=30.19 Aligned_cols=13 Identities=23% Similarity=0.271 Sum_probs=5.7
Q ss_pred cceEEEcCCCCCC
Q 024135 108 EYRVLVTGLPSSA 120 (272)
Q Consensus 108 ~~~~~v~nl~~~~ 120 (272)
.+..|-.+..+..
T Consensus 94 ~w~FYY~GTGP~a 106 (355)
T PF00937_consen 94 RWYFYYTGTGPHA 106 (355)
T ss_dssp EEEEEETTSSTTT
T ss_pred ceEEEEcCCCccc
Confidence 3444444444433
No 286
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=26.25 E-value=1.8e+02 Score=18.61 Aligned_cols=60 Identities=7% Similarity=0.137 Sum_probs=37.5
Q ss_pred EEEcCCCCCCCHHHHHHHHHh-------cCCeeEEEEEec--CCCCeEEEEeCCHHHHHHHHHHhcCccc
Q 024135 111 VLVTGLPSSASWQDLKDHMRR-------AGDVCFSQVFRD--GSGTTGIVDYTNYDDMKHAIKKLDDSEF 171 (272)
Q Consensus 111 ~~v~nl~~~~~~~~l~~~f~~-------~G~i~~~~~~~~--~~~~~~fv~f~~~~~a~~a~~~l~~~~~ 171 (272)
|...++|..++.++|.+.... +..|..+...-+ ..+.||+.+=.+.+...++.+.- |...
T Consensus 3 mver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d~~k~~Cly~Ap~~eaV~~~~~~a-G~p~ 71 (77)
T PF14026_consen 3 MVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSEDDGKIFCLYEAPDEEAVREHARRA-GLPA 71 (77)
T ss_pred EEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecCCCeEEEEEECCCHHHHHHHHHHc-CCCc
Confidence 345678888898888876543 334555544444 34447777777777777776644 5444
No 287
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=26.08 E-value=5.6e+02 Score=24.14 Aligned_cols=56 Identities=7% Similarity=0.158 Sum_probs=40.9
Q ss_pred CCCCCHHHHHHHHHhcCCe-----eEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCcccccceee
Q 024135 117 PSSASWQDLKDHMRRAGDV-----CFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (272)
Q Consensus 117 ~~~~~~~~l~~~f~~~G~i-----~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~ 177 (272)
-..++...|..+...-+.| -.|.++.+ |.||+... ..|...+..|++..+.|+...
T Consensus 496 ~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~~----~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~ 556 (629)
T PRK11634 496 DDGVEVRHIVGAIANEGDISSRYIGNIKLFAS----HSTIELPK-GMPGEVLQHFTRTRILNKPMN 556 (629)
T ss_pred ccCCCHHHHHHHHHhhcCCChhhCCcEEEeCC----ceEEEcCh-hhHHHHHHHhccccccCCceE
Confidence 4457888888888766644 45677666 88888764 457888899999999995543
No 288
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=26.06 E-value=1.1e+02 Score=18.04 Aligned_cols=27 Identities=19% Similarity=0.146 Sum_probs=21.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCe
Q 024135 7 RTLYVGNLPGDIREREVEDLFYKYGPI 33 (272)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~v 33 (272)
..++|.+.....+.++|.+++..+|.-
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg~ 28 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGGK 28 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCCE
Confidence 467788877788889999999988853
No 289
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=26.04 E-value=22 Score=22.27 Aligned_cols=24 Identities=17% Similarity=0.379 Sum_probs=16.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHh
Q 024135 4 RASRTLYVGNLPGDIREREVEDLF 27 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F 27 (272)
..+++||||+||..+-+++=..++
T Consensus 25 ~tSr~vflG~IP~~W~~~~~~~~~ 48 (67)
T PF15407_consen 25 LTSRRVFLGPIPEIWLQDHRKSWY 48 (67)
T ss_pred HcCceEEECCCChHHHHcCcchHH
Confidence 357899999999976655533333
No 290
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=25.98 E-value=2.4e+02 Score=21.92 Aligned_cols=48 Identities=17% Similarity=0.108 Sum_probs=34.7
Q ss_pred CCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcC
Q 024135 18 IREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRD 66 (272)
Q Consensus 18 ~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~ 66 (272)
.+.++..+++..++.-. +.|+.++...|-+-+...+.++|..|+..+-
T Consensus 24 ~~~~~A~~~l~~~~~p~-~ViKadGla~GKGV~i~~~~~eA~~~l~~~~ 71 (194)
T PF01071_consen 24 TDYEEALEYLEEQGYPY-VVIKADGLAAGKGVVIADDREEALEALREIF 71 (194)
T ss_dssp SSHHHHHHHHHHHSSSE-EEEEESSSCTTTSEEEESSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCCc-eEEccCCCCCCCEEEEeCCHHHHHHHHHHhc
Confidence 35677778887776433 4556677666667777899999999988753
No 291
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=25.85 E-value=1.8e+02 Score=22.72 Aligned_cols=54 Identities=11% Similarity=0.094 Sum_probs=36.3
Q ss_pred CCHHHHHHHhhccCC---eeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccC
Q 024135 18 IREREVEDLFYKYGP---IAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFD 71 (272)
Q Consensus 18 ~t~~~l~~~F~~~G~---v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~ 71 (272)
.+.+++.+....+|. |....+..-+..++-+...-.++++|..+...|-|..+.
T Consensus 25 ~s~eea~~~~~~l~~~~~VvKaQvl~GgRGK~GgVk~~~s~~ea~~~a~~mlg~~l~ 81 (202)
T PF08442_consen 25 TSPEEAREAAKELGGKPLVVKAQVLAGGRGKAGGVKIAKSPEEAKEAAKEMLGKTLK 81 (202)
T ss_dssp SSHHHHHHHHHHHTTSSEEEEE-SSSSTTTTTTCEEEESSHHHHHHHHHTTTTSEEE
T ss_pred CCHHHHHHHHHHhCCCcEEEEEeEeecCcccCCceeecCCHHHHHHHHHHHhCCceE
Confidence 466778777777764 444444445556654444456889999998888888876
No 292
>PF12091 DUF3567: Protein of unknown function (DUF3567); InterPro: IPR021951 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved EIVDK sequence motif.
Probab=25.54 E-value=88 Score=20.59 Aligned_cols=17 Identities=12% Similarity=0.222 Sum_probs=11.5
Q ss_pred CCCCHHHHHHHHHhcCC
Q 024135 118 SSASWQDLKDHMRRAGD 134 (272)
Q Consensus 118 ~~~~~~~l~~~f~~~G~ 134 (272)
...+.+++.+++..|..
T Consensus 60 ~~Pt~EevDdfL~~y~~ 76 (85)
T PF12091_consen 60 SEPTQEEVDDFLGGYDA 76 (85)
T ss_pred cCCCHHHHHHHHHHHHH
Confidence 34577788777777643
No 293
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=25.53 E-value=5.4e+02 Score=24.01 Aligned_cols=99 Identities=14% Similarity=0.136 Sum_probs=59.5
Q ss_pred CHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcC--Cccc------CCceEEEEEccCCCCCCCCC
Q 024135 19 REREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRD--GYDF------DGHRLRVELAHGGRGRSSSD 90 (272)
Q Consensus 19 t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~--g~~~------~g~~i~v~~~~~~~~~~~~~ 90 (272)
-.++|.+.|..-+-|..|.+.. .||-++.+....-+......+. +..+ .|+.|.|+|+.+..
T Consensus 59 iA~~i~~~l~~~~~~~~veiaG----pgfINf~l~~~~~~~~~~~~l~~~~~~~G~~~~~~~~kV~iE~sSaNp------ 128 (577)
T COG0018 59 IAEEIAEKLDTDEIIEKVEIAG----PGFINFFLSPEFLAELLLEILEKGDDRYGRSKLGKGKKVVIEYSSANP------ 128 (577)
T ss_pred HHHHHHHhccccCcEeEEEEcC----CCEEEEEECHHHHHHHHHHHHHhcccccCccccCCCCEEEEEEeCCCC------
Confidence 3455666666555566676641 2444444443223333333333 2222 47899999986433
Q ss_pred CCCCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHHhcC-CeeEEEEEecC
Q 024135 91 RHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDG 144 (272)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G-~i~~~~~~~~~ 144 (272)
..-+.||.+-..+-=+-|-.++...| .|.....+.|.
T Consensus 129 -----------------tkplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD~ 166 (577)
T COG0018 129 -----------------TGPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVNDW 166 (577)
T ss_pred -----------------CCCcccchhhhhHHHHHHHHHHHHcCCCeeEEeeECcH
Confidence 24577888888887888888999888 66666666664
No 294
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=25.51 E-value=37 Score=29.31 Aligned_cols=58 Identities=24% Similarity=0.305 Sum_probs=42.4
Q ss_pred CeEEEcCCCCCCCH--------HHHHHHhhc--cCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHh
Q 024135 7 RTLYVGNLPGDIRE--------REVEDLFYK--YGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRG 64 (272)
Q Consensus 7 ~~l~v~nL~~~~t~--------~~l~~~F~~--~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~ 64 (272)
+.+|+.++...... +++...|.. .|++..+.+.. .....|..|++|...+.|+.+...
T Consensus 175 r~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn~ 245 (438)
T COG5193 175 RDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNNG 245 (438)
T ss_pred hhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhcc
Confidence 45666666554433 489999998 67777777733 456678899999999999988753
No 295
>PRK15464 cold shock-like protein CspH; Provisional
Probab=24.60 E-value=53 Score=20.72 Aligned_cols=12 Identities=25% Similarity=0.445 Sum_probs=8.7
Q ss_pred CCCceEEEEecC
Q 024135 43 RPPGYAFVEFEE 54 (272)
Q Consensus 43 ~~~g~afV~f~~ 54 (272)
..+||+||+=.+
T Consensus 14 ~~KGfGFI~~~~ 25 (70)
T PRK15464 14 RKSGKGFIIPSD 25 (70)
T ss_pred CCCCeEEEccCC
Confidence 347999997654
No 296
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=23.96 E-value=39 Score=20.97 Aligned_cols=60 Identities=22% Similarity=0.172 Sum_probs=30.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEE-EecChHHHHHHHHhcC
Q 024135 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFV-EFEEARDAEDAIRGRD 66 (272)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV-~f~~~~~a~~a~~~l~ 66 (272)
-.|.|+.+...-..+.+..-+...|.-..+.....+...--.+| .|.+.++|..++..|.
T Consensus 5 y~vQv~s~~~~~~A~~~~~~l~~~g~~~~~~~~~~~~~~yrV~~G~f~~~~~A~~~~~~l~ 65 (76)
T PF05036_consen 5 YYVQVGSFSSEENAERLLAKLKKKGPDAYVVQVSKGGPWYRVRVGPFSSREEAEAALRKLK 65 (76)
T ss_dssp EEEEEEEES-HHHHHHHHHHHHHHT-----EEEEEETTCEEEEECCECTCCHHHHHHHHHH
T ss_pred EEEEEEEcCCHHHHHHHHHHHHhcCCCcceEEEecCCceEEEEECCCCCHHHHHHHHHHHh
Confidence 35666655544444555555555554332111111222222333 6899999999988876
No 297
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=23.96 E-value=64 Score=26.29 Aligned_cols=28 Identities=32% Similarity=0.566 Sum_probs=22.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhh--ccCCe
Q 024135 6 SRTLYVGNLPGDIREREVEDLFY--KYGPI 33 (272)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~--~~G~v 33 (272)
...++|+|||..++..-|.+++. .+|.+
T Consensus 97 ~~~~vv~NlPy~is~~il~~ll~~~~~g~~ 126 (262)
T PF00398_consen 97 QPLLVVGNLPYNISSPILRKLLELYRFGRV 126 (262)
T ss_dssp SEEEEEEEETGTGHHHHHHHHHHHGGGCEE
T ss_pred CceEEEEEecccchHHHHHHHhhccccccc
Confidence 45789999999999999999887 44533
No 298
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=23.61 E-value=2.3e+02 Score=18.80 Aligned_cols=48 Identities=8% Similarity=-0.038 Sum_probs=35.0
Q ss_pred CHHHHHHHHHhcC-CeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcC
Q 024135 121 SWQDLKDHMRRAG-DVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDD 168 (272)
Q Consensus 121 ~~~~l~~~f~~~G-~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~ 168 (272)
..+.+.++....| ++..+.+...+......+++.+.+.|..+.-.+..
T Consensus 21 R~~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i~~ 69 (91)
T PF08734_consen 21 RAEAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAIRS 69 (91)
T ss_pred HHHHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHHHc
Confidence 3466777777776 78888887777666788899999888877655433
No 299
>TIGR00405 L26e_arch ribosomal protein L24p/L26e, archaeal. This protein contains a KOW domain, shared by bacterial NusG and the L24p/L26e family of ribosomal proteins. Although called archaeal NusG in several publications, it is the only close homolog of eukaryotic L26e in archaeal genomes, shares an operon with L11 in many genomes, and has been sequenced from purified ribosomes. It is here designated as a ribosomal protein for these reasons.
Probab=23.58 E-value=2.9e+02 Score=20.00 Aligned_cols=28 Identities=32% Similarity=0.420 Sum_probs=22.0
Q ss_pred cCCCCCceEEEEecChHHHHHHHHhcCC
Q 024135 40 IPPRPPGYAFVEFEEARDAEDAIRGRDG 67 (272)
Q Consensus 40 ~~~~~~g~afV~f~~~~~a~~a~~~l~g 67 (272)
.+...+||-||++....+...++..+.|
T Consensus 33 vp~~fpGYvFV~~~~~~~~~~~i~~~~g 60 (145)
T TIGR00405 33 APESLKGYILVEAETKIDMRNPIIGVPH 60 (145)
T ss_pred ccCCCCcEEEEEEECcHHHHHHHhCCCC
Confidence 3445789999999988888888876665
No 300
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=22.62 E-value=1.1e+02 Score=28.47 Aligned_cols=40 Identities=8% Similarity=0.184 Sum_probs=33.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCC
Q 024135 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPP 42 (272)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~ 42 (272)
+..+..+|+.+|+.++..+.-.++|...--+..+.|...+
T Consensus 298 g~~~~~~y~~G~stslp~~~Q~~~~r~ipGle~a~i~r~g 337 (618)
T PRK05192 298 GLDTNEVYPNGISTSLPEDVQLEMLRSIPGLENAEILRPG 337 (618)
T ss_pred CCCCCEEeccCccCCCCHHHHHHHHhcCcCccceeEeecc
Confidence 4567889999999999999999999988888888886544
No 301
>PRK10943 cold shock-like protein CspC; Provisional
Probab=22.54 E-value=65 Score=20.19 Aligned_cols=12 Identities=17% Similarity=0.592 Sum_probs=8.7
Q ss_pred CCCceEEEEecC
Q 024135 43 RPPGYAFVEFEE 54 (272)
Q Consensus 43 ~~~g~afV~f~~ 54 (272)
..+||+||+=.+
T Consensus 13 ~~kGfGFI~~~~ 24 (69)
T PRK10943 13 ESKGFGFITPAD 24 (69)
T ss_pred CCCCcEEEecCC
Confidence 347999997654
No 302
>PRK09937 stationary phase/starvation inducible regulatory protein CspD; Provisional
Probab=22.32 E-value=71 Score=20.40 Aligned_cols=11 Identities=27% Similarity=0.546 Sum_probs=7.9
Q ss_pred CCceEEEEecC
Q 024135 44 PPGYAFVEFEE 54 (272)
Q Consensus 44 ~~g~afV~f~~ 54 (272)
.+||+||+=.+
T Consensus 12 ~KGfGFI~~~~ 22 (74)
T PRK09937 12 AKGFGFICPEG 22 (74)
T ss_pred CCCeEEEeeCC
Confidence 47999996543
No 303
>TIGR02381 cspD cold shock domain protein CspD. This model represents what appears to be a phylogenetically distinct clade, containing E. coli CspD and related proteobacterial proteins within the larger family of cold shock domain proteins described by pfam model pfam00313. The gene symbol cspD may have been used idependently for other subfamilies of cold shock domain proteins, such as for B. subtilis CspD. These proteins typically are shorter than 70 amino acids. In E. coli, CspD is a stress response protein induced in stationary phase. This homodimer binds single-stranded DNA and appears to inhibit DNA replication.
Probab=22.01 E-value=71 Score=19.91 Aligned_cols=39 Identities=26% Similarity=0.420 Sum_probs=20.7
Q ss_pred CCceEEEEecC-hHHHH---HHHHhcCC--cccCCceEEEEEccCC
Q 024135 44 PPGYAFVEFEE-ARDAE---DAIRGRDG--YDFDGHRLRVELAHGG 83 (272)
Q Consensus 44 ~~g~afV~f~~-~~~a~---~a~~~l~g--~~~~g~~i~v~~~~~~ 83 (272)
.+||+||.=.+ .+++- .++. .+| ..-.|..+........
T Consensus 12 ~kGfGFI~~~~g~~dvfvH~s~~~-~~g~~~l~~G~~V~f~~~~~~ 56 (68)
T TIGR02381 12 AKGFGFICPEGVDGDIFAHYSTIQ-MDGYRTLKAGQKVQFEVVQGP 56 (68)
T ss_pred CCCeEEEecCCCCccEEEEHHHhh-hcCCCCCCCCCEEEEEEEECC
Confidence 37999998765 23332 2232 122 2234667766665543
No 304
>PRK09507 cspE cold shock protein CspE; Reviewed
Probab=21.93 E-value=67 Score=20.11 Aligned_cols=11 Identities=27% Similarity=0.742 Sum_probs=8.3
Q ss_pred CCceEEEEecC
Q 024135 44 PPGYAFVEFEE 54 (272)
Q Consensus 44 ~~g~afV~f~~ 54 (272)
.+||+||+=.+
T Consensus 14 ~kGyGFI~~~~ 24 (69)
T PRK09507 14 SKGFGFITPED 24 (69)
T ss_pred CCCcEEEecCC
Confidence 47899997654
No 305
>PRK14998 cold shock-like protein CspD; Provisional
Probab=21.88 E-value=74 Score=20.24 Aligned_cols=11 Identities=27% Similarity=0.546 Sum_probs=8.1
Q ss_pred CCceEEEEecC
Q 024135 44 PPGYAFVEFEE 54 (272)
Q Consensus 44 ~~g~afV~f~~ 54 (272)
.+||+||.=.+
T Consensus 12 ~kGfGFI~~~~ 22 (73)
T PRK14998 12 AKGFGFICPEG 22 (73)
T ss_pred CCceEEEecCC
Confidence 47899997654
No 306
>PRK15463 cold shock-like protein CspF; Provisional
Probab=21.88 E-value=66 Score=20.26 Aligned_cols=39 Identities=18% Similarity=0.244 Sum_probs=19.0
Q ss_pred CCceEEEEecCh-HHHH---HHHHhc-CCcccCCceEEEEEccC
Q 024135 44 PPGYAFVEFEEA-RDAE---DAIRGR-DGYDFDGHRLRVELAHG 82 (272)
Q Consensus 44 ~~g~afV~f~~~-~~a~---~a~~~l-~g~~~~g~~i~v~~~~~ 82 (272)
.+||+||+=.+- +++- .|+..- ....-.|..|..+....
T Consensus 15 ~kGfGFI~~~~g~~DvFvH~sal~~~g~~~l~~G~~V~f~v~~~ 58 (70)
T PRK15463 15 KSGKGLITPSDGRKDVQVHISALNLRDAEELTTGLRVEFCRING 58 (70)
T ss_pred CCceEEEecCCCCccEEEEehhhhhcCCCCCCCCCEEEEEEEEC
Confidence 379999976542 2221 233311 11233466666655543
No 307
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=21.47 E-value=2.7e+02 Score=23.97 Aligned_cols=44 Identities=9% Similarity=0.139 Sum_probs=27.7
Q ss_pred CCCCCCCHHHHHHHhhc-cCCeeEEEeecC--------CCCCceEEEEecChH
Q 024135 13 NLPGDIREREVEDLFYK-YGPIAHIDLKIP--------PRPPGYAFVEFEEAR 56 (272)
Q Consensus 13 nL~~~~t~~~l~~~F~~-~G~v~~v~~~~~--------~~~~g~afV~f~~~~ 56 (272)
.|...++.++|.++|.. |..-.-|++... -....||.|-|...+
T Consensus 252 ~l~~~~t~~~i~~~y~~~Y~~epfVrv~~~~~~P~~k~V~GsN~cdIgf~~d~ 304 (349)
T COG0002 252 KLKDLVTLEELHAAYEEFYAGEPFVRVVPEGGYPDTKAVAGSNFCDIGFAVDE 304 (349)
T ss_pred ecCCCCCHHHHHHHHHHHhCCCCeEEEecCCCCCChhhhcCCcceEEEEEEcC
Confidence 45556899999999985 454444555321 123467777776655
No 308
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=21.34 E-value=38 Score=28.69 Aligned_cols=49 Identities=18% Similarity=0.249 Sum_probs=40.5
Q ss_pred CHHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCc
Q 024135 121 SWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDS 169 (272)
Q Consensus 121 ~~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~ 169 (272)
+...+.+...+.|.|..-.+...-+-|.|||-.-..+++.++++.|.+.
T Consensus 274 ~~p~iF~~i~~~G~v~~~EM~rtFNmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 274 PPPPIFKWLQKAGNVEREEMYRTFNMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred CCcHHHHHHHHhcCCCHHHHHHHhcCccceEEEEcHHHHHHHHHHHHhc
Confidence 4577888888999887777766666678999999999999999998875
No 309
>PRK11901 hypothetical protein; Reviewed
Probab=20.52 E-value=2.7e+02 Score=23.58 Aligned_cols=57 Identities=18% Similarity=0.190 Sum_probs=35.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceE--EEEecChHHHHHHHHhcCCc
Q 024135 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYA--FVEFEEARDAEDAIRGRDGY 68 (272)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~a--fV~f~~~~~a~~a~~~l~g~ 68 (272)
.||.|-. .-.++.|..|...++ +..+.+.. .|+.. |. |-.|.+.++|..|+..|-..
T Consensus 246 YTLQL~A---as~~~~L~~f~~~~~-L~~~~VYqT~RnGkpW-YVVvyG~Y~Sr~eAk~Ai~sLPa~ 307 (327)
T PRK11901 246 YTLQLSS---ASRSDTLNAYAKKQN-LSHYHVYETKRDGKPW-YVLVSGNYASSAEAKRAIATLPAE 307 (327)
T ss_pred eEEEeec---CCCHHHHHHHHHHcC-cCceEEEEEEECCceE-EEEEecCcCCHHHHHHHHHhCCHH
Confidence 3444443 345777888777775 34444432 34433 33 33599999999999987653
No 310
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=20.47 E-value=2.9e+02 Score=27.22 Aligned_cols=31 Identities=19% Similarity=0.381 Sum_probs=26.1
Q ss_pred CCCCCceEEEEecChHHHHHHHHhcCCcccC
Q 024135 41 PPRPPGYAFVEFEEARDAEDAIRGRDGYDFD 71 (272)
Q Consensus 41 ~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~ 71 (272)
..+-+||.|||=..+.++..||..+-+....
T Consensus 206 ~D~lkGyIYIEA~KqshV~~Ai~gv~niy~~ 236 (1024)
T KOG1999|consen 206 KDHLKGYIYIEADKQSHVKEAIEGVRNIYAN 236 (1024)
T ss_pred ccccceeEEEEechhHHHHHHHhhhhhheec
Confidence 3466899999999999999999988776655
No 311
>PF00313 CSD: 'Cold-shock' DNA-binding domain; InterPro: IPR002059 When Escherichia coli is exposed to a temperature drop from 37 to 10 degrees centigrade, a 4-5 hour lag phase occurs, after which growth is resumed at a reduced rate []. During the lag phase, the expression of around 13 proteins, which contain specific DNA-binding regions [], is increased 2-10 fold. These so-called 'cold shock' proteins are thought to help the cell to survive in temperatures lower than optimum growth temperature, by contrast with heat shock proteins, which help the cell to survive in temperatures greater than the optimum, possibly by condensation of the chromosome and organisation of the prokaryotic nucleoid []. A conserved domain of about 70 amino acids has been found in prokaryotic and eukaryotic DNA-binding proteins [, , ]. This domain is known as the 'cold-shock domain' (CSD), part of which is highly similar [] to the RNP-1 RNA-binding motif.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1HZC_A 1I5F_A 1HZ9_B 1C9O_B 1HZB_B 1HZA_A 2HAX_B 2L15_A 2LSS_A 3I2Z_B ....
Probab=20.45 E-value=82 Score=19.20 Aligned_cols=12 Identities=25% Similarity=0.747 Sum_probs=9.4
Q ss_pred CCceEEEEecCh
Q 024135 44 PPGYAFVEFEEA 55 (272)
Q Consensus 44 ~~g~afV~f~~~ 55 (272)
.+|||||+-.+.
T Consensus 11 ~kgyGFI~~~~~ 22 (66)
T PF00313_consen 11 EKGYGFITSDDG 22 (66)
T ss_dssp TTTEEEEEETTS
T ss_pred CCCceEEEEccc
Confidence 378999988763
No 312
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=20.16 E-value=1e+02 Score=25.81 Aligned_cols=23 Identities=13% Similarity=0.163 Sum_probs=19.3
Q ss_pred EEEEeCCHHHHHHHHHHhcCccc
Q 024135 149 GIVDYTNYDDMKHAIKKLDDSEF 171 (272)
Q Consensus 149 ~fv~f~~~~~a~~a~~~l~~~~~ 171 (272)
|||+|.+..+|..|.+.+.....
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~ 23 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP 23 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC
Confidence 79999999999999997655544
Done!