Query 024135
Match_columns 272
No_of_seqs 306 out of 2625
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 18:47:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024135.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024135hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tyt_A Heterogeneous nuclear r 100.0 7.7E-34 2.6E-38 221.9 20.2 178 4-183 2-202 (205)
2 4f02_A Polyadenylate-binding p 100.0 1.8E-34 6.1E-39 227.6 16.5 163 3-186 12-179 (213)
3 3md3_A Nuclear and cytoplasmic 100.0 7.3E-33 2.5E-37 209.9 20.0 152 7-175 1-158 (166)
4 1fxl_A Paraneoplastic encephal 100.0 1.8E-32 6.1E-37 208.0 20.5 153 5-176 1-160 (167)
5 1b7f_A Protein (SXL-lethal pro 100.0 2.2E-32 7.6E-37 207.7 20.6 150 5-173 2-158 (168)
6 3pgw_A U1-A; protein-RNA compl 100.0 9.5E-32 3.2E-36 221.1 23.9 178 3-185 6-280 (282)
7 1l3k_A Heterogeneous nuclear r 100.0 2.8E-32 9.5E-37 212.4 19.2 166 4-188 11-183 (196)
8 2adc_A Polypyrimidine tract-bi 100.0 1E-31 3.4E-36 214.2 21.2 170 3-175 31-219 (229)
9 2yh0_A Splicing factor U2AF 65 100.0 4.3E-31 1.5E-35 206.0 22.9 176 4-187 2-193 (198)
10 1qm9_A Polypyrimidine tract-bi 100.0 1.3E-31 4.4E-36 209.0 19.6 170 5-177 2-190 (198)
11 3nmr_A Cugbp ELAV-like family 100.0 1.3E-31 4.6E-36 204.7 18.2 151 5-173 2-163 (175)
12 2qfj_A FBP-interacting repress 100.0 4.7E-31 1.6E-35 208.5 21.4 170 5-186 27-203 (216)
13 1fje_B Nucleolin RBD12, protei 100.0 2.2E-32 7.5E-37 209.2 12.7 161 3-186 10-172 (175)
14 2g4b_A Splicing factor U2AF 65 100.0 4.6E-31 1.6E-35 201.3 19.0 150 4-176 2-166 (172)
15 2cjk_A Nuclear polyadenylated 100.0 1.1E-31 3.8E-36 203.7 12.9 158 4-187 1-165 (167)
16 2ghp_A U4/U6 snRNA-associated 100.0 6.8E-30 2.3E-34 211.0 17.8 166 5-187 116-290 (292)
17 3sde_A Paraspeckle component 1 100.0 1.3E-29 4.6E-34 205.8 18.3 141 4-172 20-163 (261)
18 3smz_A Protein raver-1, ribonu 100.0 4.2E-29 1.4E-33 205.5 20.9 150 4-186 20-173 (284)
19 3smz_A Protein raver-1, ribonu 100.0 3E-29 1E-33 206.4 19.9 164 4-187 93-263 (284)
20 2ghp_A U4/U6 snRNA-associated 100.0 2.5E-29 8.7E-34 207.6 18.2 152 4-186 39-195 (292)
21 4f25_A Polyadenylate-binding p 99.9 1.6E-24 5.5E-29 153.6 9.6 108 5-123 4-112 (115)
22 3pgw_S U1-70K; protein-RNA com 99.9 3.4E-22 1.2E-26 172.4 19.0 82 4-85 100-184 (437)
23 3pgw_S U1-70K; protein-RNA com 99.9 2.2E-22 7.5E-27 173.6 12.2 162 13-181 4-179 (437)
24 3lqv_A PRE-mRNA branch site pr 99.9 1.6E-22 5.5E-27 143.5 8.7 106 2-134 4-109 (115)
25 4fxv_A ELAV-like protein 1; RN 99.9 4.2E-22 1.4E-26 137.0 9.6 78 5-82 18-98 (99)
26 2hvz_A Splicing factor, argini 99.9 6.7E-22 2.3E-26 136.9 9.3 100 7-117 1-100 (101)
27 2wbr_A GW182, gawky, LD47780P; 99.9 4.8E-21 1.6E-25 125.5 11.1 74 4-80 5-78 (89)
28 1x4a_A Splicing factor, argini 99.9 7.2E-21 2.5E-25 133.5 12.3 84 2-85 18-101 (109)
29 1sjq_A Polypyrimidine tract-bi 99.9 3.6E-21 1.2E-25 132.2 9.7 81 2-85 12-94 (105)
30 2lxi_A RNA-binding protein 10; 99.9 1.8E-21 6.2E-26 131.8 8.1 79 6-84 1-84 (91)
31 2i2y_A Fusion protein consists 99.8 7.2E-21 2.5E-25 141.3 11.9 136 42-186 10-146 (150)
32 2fy1_A RNA-binding motif prote 99.8 1.8E-20 6.3E-25 132.7 13.0 86 1-86 2-89 (116)
33 3r27_A HnRNP L, heterogeneous 99.8 9.5E-21 3.2E-25 128.7 10.7 78 3-83 18-97 (100)
34 3s8s_A Histone-lysine N-methyl 99.8 5.3E-21 1.8E-25 134.0 9.6 79 4-82 4-85 (110)
35 2kn4_A Immunoglobulin G-bindin 99.8 3.9E-20 1.3E-24 138.6 14.9 143 36-188 3-150 (158)
36 1whw_A Hypothetical protein ri 99.8 2.9E-20 9.8E-25 128.2 12.9 83 3-85 5-90 (99)
37 2dnz_A Probable RNA-binding pr 99.8 3.7E-20 1.3E-24 126.6 12.7 82 4-85 3-87 (95)
38 2a3j_A U1 small nuclear ribonu 99.8 1.5E-20 5E-25 134.7 10.9 81 3-83 26-110 (127)
39 2cqi_A Nucleolysin TIAR; RNA r 99.8 4.6E-20 1.6E-24 128.1 13.2 83 3-85 12-95 (103)
40 2x1f_A MRNA 3'-END-processing 99.8 1.7E-20 6E-25 128.5 10.6 80 5-84 1-83 (96)
41 2dnm_A SRP46 splicing factor; 99.8 2.1E-20 7.2E-25 129.8 10.9 82 4-85 11-95 (103)
42 2cqb_A Peptidyl-prolyl CIS-tra 99.8 2.1E-20 7E-25 129.6 10.8 82 4-85 10-94 (102)
43 2lkz_A RNA-binding protein 5; 99.8 5.8E-21 2E-25 129.8 7.8 79 4-82 7-94 (95)
44 2cpf_A RNA binding motif prote 99.8 1.7E-20 5.9E-25 129.0 10.0 83 3-85 2-90 (98)
45 3mdf_A Peptidyl-prolyl CIS-tra 99.8 1.8E-20 6.2E-25 125.4 9.8 79 3-81 4-85 (85)
46 2cq1_A PTB-like protein L; RRM 99.8 4.7E-20 1.6E-24 126.7 11.8 80 3-85 12-93 (101)
47 2dgx_A KIAA0430 protein; RRM d 99.8 3.3E-20 1.1E-24 127.0 11.0 81 4-84 7-91 (96)
48 2dgs_A DAZ-associated protein 99.8 6.4E-20 2.2E-24 126.4 12.5 82 3-85 7-91 (99)
49 2ad9_A Polypyrimidine tract-bi 99.8 2.6E-20 8.9E-25 131.1 10.4 81 2-85 27-109 (119)
50 1x5s_A Cold-inducible RNA-bind 99.8 4.5E-20 1.5E-24 127.9 11.3 82 4-85 10-94 (102)
51 1nu4_A U1A RNA binding domain; 99.8 9.5E-21 3.3E-25 130.1 7.7 84 1-84 3-90 (97)
52 1x5t_A Splicing factor 3B subu 99.8 3.6E-20 1.2E-24 126.9 10.6 82 4-85 3-88 (96)
53 2e5h_A Zinc finger CCHC-type a 99.8 4E-20 1.4E-24 126.2 10.7 78 4-81 14-94 (94)
54 1x4d_A Matrin 3; structural ge 99.8 1.7E-20 5.8E-25 128.8 8.8 79 3-84 12-93 (102)
55 2dgv_A HnRNP M, heterogeneous 99.8 3.1E-20 1E-24 126.2 10.0 84 2-85 4-88 (92)
56 2d9p_A Polyadenylate-binding p 99.8 4.2E-20 1.4E-24 128.3 10.9 83 3-85 12-95 (103)
57 1x5u_A Splicing factor 3B subu 99.8 7.2E-20 2.4E-24 127.6 12.0 82 4-85 13-97 (105)
58 3md1_A Nuclear and cytoplasmic 99.8 3.5E-20 1.2E-24 123.4 9.9 78 6-83 1-81 (83)
59 2dgo_A Cytotoxic granule-assoc 99.8 1E-19 3.5E-24 128.9 12.8 83 4-86 13-98 (115)
60 2dgu_A Heterogeneous nuclear r 99.8 1.1E-19 3.7E-24 126.1 12.7 79 4-87 9-87 (103)
61 2cq3_A RNA-binding protein 9; 99.8 1.2E-19 4.3E-24 125.9 12.8 83 3-85 12-95 (103)
62 2do4_A Squamous cell carcinoma 99.8 6.3E-20 2.2E-24 126.7 10.9 81 4-84 15-97 (100)
63 1wex_A Hypothetical protein (r 99.8 7.5E-20 2.6E-24 126.5 11.3 79 3-84 12-92 (104)
64 4a8x_A RNA-binding protein wit 99.8 5E-20 1.7E-24 124.1 10.2 80 4-83 2-85 (88)
65 1x4c_A Splicing factor, argini 99.8 1.5E-19 5.2E-24 126.5 12.9 78 4-85 13-95 (108)
66 3bs9_A Nucleolysin TIA-1 isofo 99.8 2.9E-20 1E-24 125.0 9.0 79 4-82 4-85 (87)
67 1wi8_A EIF-4B, eukaryotic tran 99.8 7.3E-20 2.5E-24 127.2 11.2 81 3-85 12-96 (104)
68 2div_A TRNA selenocysteine ass 99.8 3.1E-20 1.1E-24 128.0 9.2 83 2-84 5-95 (99)
69 2cph_A RNA binding motif prote 99.8 1.1E-19 3.9E-24 127.0 12.1 83 3-85 12-99 (107)
70 2cq0_A Eukaryotic translation 99.8 3.7E-20 1.3E-24 128.6 9.4 82 4-85 13-97 (103)
71 2dnq_A RNA-binding protein 4B; 99.8 1.2E-19 4E-24 122.8 11.6 78 3-85 5-82 (90)
72 2cqd_A RNA-binding region cont 99.8 2.3E-19 7.9E-24 127.3 13.6 82 3-85 14-98 (116)
73 2do0_A HnRNP M, heterogeneous 99.8 1.9E-19 6.3E-24 127.4 12.9 83 3-85 12-96 (114)
74 2dgt_A RNA-binding protein 30; 99.8 1.5E-19 5.2E-24 122.8 11.8 79 2-85 6-84 (92)
75 1p27_B RNA-binding protein 8A; 99.8 4.2E-20 1.4E-24 129.0 9.2 80 4-83 21-103 (106)
76 2cpz_A CUG triplet repeat RNA- 99.8 6.8E-20 2.3E-24 129.8 10.4 82 4-85 23-107 (115)
77 2dgp_A Bruno-like 4, RNA bindi 99.8 1.2E-19 4.2E-24 126.6 11.4 83 3-85 10-98 (106)
78 1x4h_A RNA-binding protein 28; 99.8 1.7E-19 5.7E-24 127.0 12.1 82 4-85 13-103 (111)
79 1x4f_A Matrin 3; structural ge 99.8 3.7E-20 1.3E-24 128.9 8.4 79 3-84 22-103 (112)
80 2dnh_A Bruno-like 5, RNA bindi 99.8 1.2E-19 4.1E-24 126.4 10.8 82 4-85 13-99 (105)
81 2cqc_A Arginine/serine-rich sp 99.8 5.6E-20 1.9E-24 125.7 8.7 79 4-82 13-94 (95)
82 2jvr_A Nucleolar protein 3; RN 99.8 7.9E-20 2.7E-24 127.6 9.5 79 4-83 26-105 (111)
83 2ywk_A Putative RNA-binding pr 99.8 6.6E-20 2.2E-24 125.4 9.0 80 3-82 13-94 (95)
84 1why_A Hypothetical protein ri 99.8 1.7E-19 5.8E-24 123.8 10.9 77 4-83 15-93 (97)
85 1s79_A Lupus LA protein; RRM, 99.8 7.6E-20 2.6E-24 126.4 9.0 78 4-82 9-88 (103)
86 2dnp_A RNA-binding protein 14; 99.8 1.9E-19 6.4E-24 121.8 10.6 77 3-84 6-82 (90)
87 1x4g_A Nucleolysin TIAR; struc 99.8 2.7E-19 9.4E-24 125.4 11.6 80 3-85 22-101 (109)
88 1oo0_B CG8781-PA, drosophila Y 99.8 1.1E-19 3.8E-24 127.7 9.6 80 4-83 24-106 (110)
89 2kxn_B Transformer-2 protein h 99.8 8.2E-20 2.8E-24 131.7 9.0 81 4-84 44-127 (129)
90 3p5t_L Cleavage and polyadenyl 99.8 1.6E-20 5.4E-25 127.0 4.7 78 7-84 2-84 (90)
91 2cpe_A RNA-binding protein EWS 99.8 2.2E-19 7.6E-24 126.8 10.8 83 3-85 12-105 (113)
92 2dng_A Eukaryotic translation 99.8 2.3E-19 7.8E-24 124.5 10.7 81 3-85 12-95 (103)
93 2la6_A RNA-binding protein FUS 99.8 1.3E-19 4.6E-24 124.7 9.4 79 3-81 10-99 (99)
94 3ucg_A Polyadenylate-binding p 99.8 2.4E-19 8.1E-24 121.0 10.3 78 5-83 5-85 (89)
95 2cpi_A CCR4-NOT transcription 99.8 8.9E-20 3.1E-24 128.3 8.5 81 4-84 13-102 (111)
96 2cpj_A Non-POU domain-containi 99.8 3.1E-19 1.1E-23 122.9 11.0 78 4-84 13-90 (99)
97 2nlw_A Eukaryotic translation 99.8 2.7E-19 9.3E-24 124.5 10.7 80 4-83 13-100 (105)
98 2khc_A Testis-specific RNP-typ 99.8 1.3E-19 4.4E-24 129.0 9.3 79 3-81 37-118 (118)
99 2fc9_A NCL protein; structure 99.8 2.4E-19 8.1E-24 124.0 10.3 80 4-84 13-92 (101)
100 3ex7_B RNA-binding protein 8A; 99.8 1.5E-19 5.1E-24 130.2 9.6 83 4-86 20-105 (126)
101 3ulh_A THO complex subunit 4; 99.8 1.7E-19 5.8E-24 126.1 9.6 78 4-81 27-106 (107)
102 2jrs_A RNA-binding protein 39; 99.8 1.3E-19 4.3E-24 126.7 8.9 80 3-82 23-105 (108)
103 2cq2_A Hypothetical protein LO 99.8 2.1E-19 7.2E-24 125.1 9.9 80 2-84 21-107 (114)
104 2dhg_A TRNA selenocysteine ass 99.8 2.1E-19 7.1E-24 125.0 10.0 83 3-85 6-92 (104)
105 2xnq_A Nuclear polyadenylated 99.8 3.4E-19 1.1E-23 122.1 10.8 75 3-82 19-94 (97)
106 2err_A Ataxin-2-binding protei 99.8 1.9E-19 6.7E-24 126.1 9.8 80 3-82 26-106 (109)
107 2cpx_A Hypothetical protein FL 99.8 2.3E-19 7.9E-24 127.1 10.3 81 4-85 23-107 (115)
108 1whx_A Hypothetical protein ri 99.8 1.5E-19 5.2E-24 126.9 9.1 78 4-84 8-85 (111)
109 1u6f_A Tcubp1, RNA-binding pro 99.8 4.3E-19 1.5E-23 130.0 11.9 83 4-86 40-125 (139)
110 3ns6_A Eukaryotic translation 99.8 5.2E-20 1.8E-24 126.9 6.5 79 4-82 4-92 (100)
111 2cpd_A Apobec-1 stimulating pr 99.8 8E-19 2.7E-23 120.8 12.1 76 4-84 13-90 (99)
112 2jvo_A Nucleolar protein 3; nu 99.8 2.7E-19 9.1E-24 125.0 9.8 77 3-84 28-104 (108)
113 2dis_A Unnamed protein product 99.8 7.7E-19 2.6E-23 123.2 12.2 83 3-85 5-94 (109)
114 2ytc_A PRE-mRNA-splicing facto 99.8 2.2E-19 7.4E-24 120.1 8.9 76 3-81 9-85 (85)
115 3s7r_A Heterogeneous nuclear r 99.8 3.8E-19 1.3E-23 119.4 10.1 77 3-80 8-87 (87)
116 2kvi_A Nuclear polyadenylated 99.8 2.1E-19 7.1E-24 123.0 8.7 78 3-85 7-85 (96)
117 2krb_A Eukaryotic translation 99.8 1.1E-19 3.7E-24 120.4 7.1 72 6-77 1-80 (81)
118 2kt5_A RNA and export factor-b 99.8 7.9E-19 2.7E-23 126.0 12.2 82 4-85 33-116 (124)
119 2cqh_A IGF-II mRNA-binding pro 99.8 2.1E-19 7.2E-24 122.3 8.6 80 2-85 4-85 (93)
120 2rs2_A Musashi-1, RNA-binding 99.8 6.5E-19 2.2E-23 123.3 11.0 80 4-84 23-105 (109)
121 2dh8_A DAZ-associated protein 99.8 2.7E-19 9.2E-24 124.6 9.0 82 3-85 13-97 (105)
122 2e5j_A Methenyltetrahydrofolat 99.8 3.5E-19 1.2E-23 122.2 8.9 78 5-84 18-95 (97)
123 1wf1_A RNA-binding protein RAL 99.8 5.7E-19 1.9E-23 124.0 10.1 76 5-85 26-102 (110)
124 2m2b_A RNA-binding protein 10; 99.8 3.8E-19 1.3E-23 128.8 9.4 82 2-84 19-109 (131)
125 2la4_A Nuclear and cytoplasmic 99.8 2.8E-19 9.5E-24 123.6 8.3 76 4-82 25-100 (101)
126 1h2v_Z 20 kDa nuclear CAP bind 99.8 6.2E-19 2.1E-23 131.7 10.8 82 4-85 37-121 (156)
127 3beg_B Splicing factor, argini 99.8 2.9E-19 1E-23 126.3 8.2 79 105-186 13-92 (115)
128 1x4e_A RNA binding motif, sing 99.8 8E-20 2.7E-24 122.2 5.0 78 3-80 2-82 (85)
129 2mss_A Protein (musashi1); RNA 99.8 2.6E-19 8.8E-24 116.8 7.3 72 8-80 1-75 (75)
130 2j76_E EIF-4B, EIF4B, eukaryot 99.8 2.6E-19 9E-24 123.4 7.7 77 4-82 17-97 (100)
131 2cqg_A TDP-43, TAR DNA-binding 99.8 1.6E-18 5.4E-23 120.2 11.6 81 3-85 12-95 (103)
132 3n9u_C Cleavage and polyadenyl 99.8 4.1E-19 1.4E-23 132.1 9.1 77 5-81 54-135 (156)
133 2lea_A Serine/arginine-rich sp 99.8 3.3E-19 1.1E-23 129.6 8.5 82 4-85 45-129 (135)
134 1fjc_A Nucleolin RBD2, protein 99.8 2.1E-19 7.1E-24 123.1 6.9 79 4-84 14-92 (96)
135 2cq4_A RNA binding motif prote 99.8 5.6E-19 1.9E-23 124.9 9.3 77 5-82 24-103 (114)
136 2kn4_A Immunoglobulin G-bindin 99.8 1.4E-18 4.8E-23 130.1 12.0 82 4-85 68-152 (158)
137 2fc8_A NCL protein; structure 99.8 6.2E-19 2.1E-23 122.1 9.3 83 3-85 12-94 (102)
138 1p1t_A Cleavage stimulation fa 99.8 3.8E-19 1.3E-23 123.7 8.2 81 4-84 6-89 (104)
139 2cqp_A RNA-binding protein 12; 99.8 2E-19 6.9E-24 123.6 6.6 79 4-82 13-94 (98)
140 2ek1_A RNA-binding protein 12; 99.8 1.6E-19 5.4E-24 123.5 5.8 78 4-81 13-93 (95)
141 2diu_A KIAA0430 protein; struc 99.8 1.8E-18 6E-23 114.3 10.3 75 4-85 6-86 (96)
142 3egn_A RNA-binding protein 40; 99.8 3.6E-19 1.2E-23 131.0 7.9 82 3-84 42-131 (143)
143 1x4b_A Heterogeneous nuclear r 99.8 1.7E-18 5.9E-23 122.7 11.0 80 5-85 26-108 (116)
144 2dgw_A Probable RNA-binding pr 99.8 1.4E-18 4.8E-23 117.7 10.1 79 3-83 7-87 (91)
145 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 1.2E-18 4.1E-23 127.8 10.4 78 3-80 60-140 (140)
146 1uaw_A Mouse-musashi-1; RNP-ty 99.8 3.7E-19 1.3E-23 116.7 6.9 73 7-80 1-76 (77)
147 1rk8_A CG8781-PA, CG8781-PA pr 99.8 6.9E-19 2.3E-23 132.6 9.3 81 4-84 70-153 (165)
148 1wg1_A KIAA1579 protein, homol 99.8 6.3E-19 2.2E-23 118.6 7.8 77 3-83 2-78 (88)
149 2ki2_A SS-DNA binding protein 99.8 1.8E-19 6.1E-24 121.9 5.1 77 7-84 2-81 (90)
150 2jwn_A Embryonic polyadenylate 99.8 1.5E-18 5.2E-23 124.5 10.1 79 5-84 35-116 (124)
151 3beg_B Splicing factor, argini 99.8 1.6E-18 5.3E-23 122.6 9.7 76 4-83 14-94 (115)
152 2i2y_A Fusion protein consists 99.8 1.5E-18 5.1E-23 128.8 9.9 78 4-83 71-148 (150)
153 1x5p_A Negative elongation fac 99.8 4.3E-18 1.5E-22 116.7 11.4 76 4-84 13-88 (97)
154 1wg5_A Heterogeneous nuclear r 99.8 3.3E-18 1.1E-22 118.7 11.0 79 4-83 13-94 (104)
155 2cpy_A RNA-binding protein 12; 99.8 1.1E-18 3.8E-23 123.2 8.3 78 4-82 13-93 (114)
156 1x5o_A RNA binding motif, sing 99.8 1.7E-18 5.9E-23 122.4 9.2 79 4-82 23-111 (114)
157 2e5g_A U6 snRNA-specific termi 99.8 3.6E-18 1.2E-22 116.3 10.5 78 4-84 6-83 (94)
158 1x4c_A Splicing factor, argini 99.8 2E-17 6.9E-22 115.6 14.0 82 103-187 10-92 (108)
159 1iqt_A AUF1, heterogeneous nuc 99.8 8.7E-19 3E-23 114.2 6.5 72 8-80 1-75 (75)
160 1fj7_A Nucleolin RBD1, protein 99.8 3.3E-19 1.1E-23 123.2 4.7 80 4-84 15-96 (101)
161 2db1_A Heterogeneous nuclear r 99.8 1.2E-18 4.2E-23 123.7 7.6 77 4-81 15-96 (118)
162 2e44_A Insulin-like growth fac 99.8 4E-18 1.4E-22 116.7 9.8 79 4-83 13-92 (96)
163 1wez_A HnRNP H', FTP-3, hetero 99.8 2.1E-18 7.2E-23 119.1 8.4 79 4-84 13-93 (102)
164 2hgl_A HNRPF protein, heteroge 99.8 2.4E-18 8.3E-23 124.5 9.0 77 4-81 42-123 (136)
165 2f3j_A RNA and export factor b 99.8 3.2E-18 1.1E-22 130.0 9.9 80 4-83 86-167 (177)
166 1sjr_A Polypyrimidine tract-bi 99.7 6.6E-18 2.3E-22 124.7 10.4 77 7-84 47-125 (164)
167 1wel_A RNA-binding protein 12; 99.7 2.7E-18 9.1E-23 123.2 8.1 77 4-81 23-102 (124)
168 3zzy_A Polypyrimidine tract-bi 99.7 7.7E-18 2.6E-22 119.9 9.8 75 8-84 30-107 (130)
169 3q2s_C Cleavage and polyadenyl 99.7 2.9E-18 1E-22 135.7 8.4 77 5-81 67-148 (229)
170 2dnn_A RNA-binding protein 12; 99.7 6.9E-18 2.3E-22 117.5 9.3 74 6-81 16-91 (109)
171 2hzc_A Splicing factor U2AF 65 99.7 5.7E-18 2E-22 113.7 8.4 73 3-79 3-86 (87)
172 3d2w_A TAR DNA-binding protein 99.7 1.1E-17 3.7E-22 112.6 9.4 75 3-83 8-84 (89)
173 2lmi_A GRSF-1, G-rich sequence 99.7 2.4E-18 8.3E-23 120.1 6.4 78 3-81 8-90 (107)
174 2e5i_A Heterogeneous nuclear r 99.7 1.6E-17 5.4E-22 117.8 10.4 77 5-84 22-103 (124)
175 1wf0_A TDP-43, TAR DNA-binding 99.7 6.9E-18 2.4E-22 113.5 8.1 78 3-84 2-79 (88)
176 1rk8_A CG8781-PA, CG8781-PA pr 99.7 1.8E-17 6.1E-22 124.9 11.1 134 50-187 11-151 (165)
177 2pe8_A Splicing factor 45; RRM 99.7 2.3E-17 8E-22 114.1 9.8 81 2-82 4-93 (105)
178 2lcw_A RNA-binding protein FUS 99.6 3.2E-19 1.1E-23 126.5 0.0 82 3-84 4-96 (116)
179 2hgn_A Heterogeneous nuclear r 99.7 4.1E-18 1.4E-22 123.7 5.8 79 4-84 44-124 (139)
180 2bz2_A Negative elongation fac 99.7 2.8E-17 9.5E-22 117.0 9.6 76 4-84 37-112 (121)
181 2dha_A FLJ20171 protein; RRM d 99.7 7.4E-18 2.5E-22 119.8 6.6 77 4-81 21-103 (123)
182 2hgm_A HNRPF protein, heteroge 99.7 1.8E-17 6.2E-22 118.1 8.1 76 4-81 40-119 (126)
183 2xs2_A Deleted in azoospermia- 99.7 8.5E-18 2.9E-22 116.3 6.1 78 4-83 7-86 (102)
184 4fxv_A ELAV-like protein 1; RN 99.7 9.3E-17 3.2E-21 110.1 10.7 76 107-186 18-97 (99)
185 2dnl_A Cytoplasmic polyadenyla 99.7 1.1E-16 3.9E-21 112.9 11.0 75 3-80 5-85 (114)
186 2lea_A Serine/arginine-rich sp 99.7 3.6E-17 1.2E-21 118.8 8.6 118 46-187 5-126 (135)
187 2jvr_A Nucleolar protein 3; RN 99.7 6.5E-17 2.2E-21 112.8 9.1 76 107-186 27-103 (111)
188 3md3_A Nuclear and cytoplasmic 99.7 8.2E-17 2.8E-21 121.2 9.9 78 4-81 85-165 (166)
189 2qfj_A FBP-interacting repress 99.7 9.1E-17 3.1E-21 126.3 10.5 82 4-85 123-207 (216)
190 4f02_A Polyadenylate-binding p 99.7 5.9E-17 2E-21 127.3 9.3 78 5-82 102-180 (213)
191 2j8a_A Histone-lysine N-methyl 99.7 6.2E-17 2.1E-21 113.1 7.5 76 7-82 3-95 (136)
192 2dit_A HIV TAT specific factor 99.7 2.5E-16 8.6E-21 110.7 10.8 80 4-84 13-103 (112)
193 2fy1_A RNA-binding motif prote 99.7 7.8E-16 2.7E-20 108.8 13.0 77 106-186 5-84 (116)
194 3u1l_A PRE-mRNA-splicing facto 99.7 6.4E-17 2.2E-21 127.4 7.8 77 4-83 132-229 (240)
195 1sjq_A Polypyrimidine tract-bi 99.7 3.9E-16 1.3E-20 107.1 10.6 77 106-188 14-92 (105)
196 1x4a_A Splicing factor, argini 99.7 2E-15 6.8E-20 105.6 14.3 82 103-188 17-99 (109)
197 3ex7_B RNA-binding protein 8A; 99.7 4.3E-16 1.5E-20 111.9 11.0 76 104-179 18-97 (126)
198 1fje_B Nucleolin RBD12, protei 99.7 1.3E-16 4.4E-21 121.4 8.6 77 4-82 97-173 (175)
199 2g4b_A Splicing factor U2AF 65 99.7 1.3E-16 4.5E-21 120.9 8.5 76 5-80 93-171 (172)
200 2yh0_A Splicing factor U2AF 65 99.7 2.2E-16 7.4E-21 122.5 9.9 81 4-84 112-195 (198)
201 2cjk_A Nuclear polyadenylated 99.7 1.9E-16 6.4E-21 119.5 8.4 77 5-82 86-165 (167)
202 2cq3_A RNA-binding protein 9; 99.7 2.7E-15 9.4E-20 103.8 13.5 82 103-188 10-93 (103)
203 2d9p_A Polyadenylate-binding p 99.7 9.5E-16 3.3E-20 106.1 11.0 82 103-188 10-93 (103)
204 4f25_A Polyadenylate-binding p 99.7 5.9E-16 2E-20 109.3 10.1 76 108-187 5-82 (115)
205 2dnm_A SRP46 splicing factor; 99.7 7.8E-16 2.7E-20 106.6 10.4 81 103-187 8-92 (103)
206 2cqi_A Nucleolysin TIAR; RNA r 99.7 3.6E-15 1.2E-19 103.2 13.8 81 104-188 11-93 (103)
207 1whw_A Hypothetical protein ri 99.7 2.1E-15 7E-20 103.6 12.3 80 106-189 6-89 (99)
208 2dnq_A RNA-binding protein 4B; 99.7 2.3E-15 8E-20 101.4 12.1 75 106-188 6-80 (90)
209 2dgs_A DAZ-associated protein 99.7 1.9E-15 6.6E-20 103.7 11.9 80 104-188 6-89 (99)
210 1b7f_A Protein (SXL-lethal pro 99.7 4.2E-16 1.4E-20 117.6 9.3 77 4-80 87-168 (168)
211 2e5j_A Methenyltetrahydrofolat 99.6 1.8E-15 6.1E-20 103.5 11.5 79 104-187 15-93 (97)
212 2wbr_A GW182, gawky, LD47780P; 99.6 1.2E-15 4.1E-20 99.9 10.0 71 108-184 7-77 (89)
213 1x5s_A Cold-inducible RNA-bind 99.6 1.8E-15 6.2E-20 104.5 11.6 76 104-179 8-87 (102)
214 2dgt_A RNA-binding protein 30; 99.6 2.8E-15 9.7E-20 101.4 12.3 77 104-188 6-82 (92)
215 2dnz_A Probable RNA-binding pr 99.6 2.2E-15 7.7E-20 102.6 11.8 78 107-188 4-85 (95)
216 3nmr_A Cugbp ELAV-like family 99.6 3.8E-16 1.3E-20 118.6 8.8 76 5-80 94-174 (175)
217 2voo_A Lupus LA protein; RNA-b 99.6 5.8E-16 2E-20 119.3 9.5 77 6-83 109-187 (193)
218 1l3k_A Heterogeneous nuclear r 99.6 5E-16 1.7E-20 120.2 9.2 80 5-85 103-185 (196)
219 3v4m_A Splicing factor U2AF 65 99.6 6.5E-16 2.2E-20 106.9 8.7 79 3-81 2-95 (105)
220 3s8s_A Histone-lysine N-methyl 99.6 1.7E-15 5.9E-20 105.8 10.9 72 107-178 5-80 (110)
221 2dgx_A KIAA0430 protein; RRM d 99.6 2.7E-15 9.2E-20 102.4 11.6 80 105-188 6-90 (96)
222 1x4h_A RNA-binding protein 28; 99.6 3.9E-15 1.3E-19 104.5 12.8 83 103-189 10-102 (111)
223 2dgu_A Heterogeneous nuclear r 99.6 5.6E-15 1.9E-19 102.2 13.2 75 106-188 9-83 (103)
224 1x4d_A Matrin 3; structural ge 99.6 1.1E-15 3.7E-20 104.7 9.4 75 106-186 13-90 (102)
225 2cq0_A Eukaryotic translation 99.6 3.1E-15 1.1E-19 103.5 11.8 81 104-188 11-95 (103)
226 2cpz_A CUG triplet repeat RNA- 99.6 9.1E-15 3.1E-19 103.2 14.4 81 105-189 22-106 (115)
227 1x5u_A Splicing factor 3B subu 99.6 3.6E-15 1.2E-19 103.5 12.0 81 103-187 10-94 (105)
228 1fxl_A Paraneoplastic encephal 99.6 7.8E-16 2.7E-20 115.9 9.1 76 5-80 87-167 (167)
229 2dgo_A Cytotoxic granule-assoc 99.6 1.4E-14 4.8E-19 102.2 15.0 82 103-188 10-95 (115)
230 1why_A Hypothetical protein ri 99.6 3.9E-15 1.3E-19 101.8 11.8 76 106-187 15-92 (97)
231 2cqb_A Peptidyl-prolyl CIS-tra 99.6 2.3E-15 7.8E-20 104.0 10.7 81 105-189 9-93 (102)
232 3r27_A HnRNP L, heterogeneous 99.6 2.8E-15 9.5E-20 101.7 10.7 75 106-186 19-95 (100)
233 4a8x_A RNA-binding protein wit 99.6 1.7E-15 6E-20 101.6 9.8 69 108-176 4-77 (88)
234 2cpf_A RNA binding motif prote 99.6 2.7E-15 9.1E-20 102.9 10.8 78 107-188 4-88 (98)
235 2dnp_A RNA-binding protein 14; 99.6 3.4E-15 1.2E-19 100.6 11.1 75 106-188 7-81 (90)
236 1wi8_A EIF-4B, eukaryotic tran 99.6 4E-15 1.4E-19 103.1 11.8 80 103-188 10-94 (104)
237 2cq1_A PTB-like protein L; RRM 99.6 5.5E-15 1.9E-19 101.3 12.2 78 104-187 11-90 (101)
238 2cph_A RNA binding motif prote 99.6 4.8E-15 1.6E-19 103.3 12.1 82 103-188 10-97 (107)
239 3pgw_A U1-A; protein-RNA compl 99.6 1.2E-15 4E-20 125.0 10.4 75 5-81 206-281 (282)
240 2dgp_A Bruno-like 4, RNA bindi 99.6 3.9E-15 1.3E-19 103.5 11.5 81 104-188 9-96 (106)
241 2div_A TRNA selenocysteine ass 99.6 4.5E-15 1.5E-19 101.9 11.6 83 106-188 7-94 (99)
242 2e5h_A Zinc finger CCHC-type a 99.6 4.4E-15 1.5E-19 100.9 11.4 73 103-175 11-87 (94)
243 1x4g_A Nucleolysin TIAR; struc 99.6 4.3E-15 1.5E-19 103.9 11.6 77 106-188 23-99 (109)
244 2cqc_A Arginine/serine-rich sp 99.6 8E-15 2.7E-19 99.8 12.6 79 103-185 10-92 (95)
245 2ad9_A Polypyrimidine tract-bi 99.6 3.3E-15 1.1E-19 105.0 10.4 77 105-187 28-106 (119)
246 1qm9_A Polypyrimidine tract-bi 99.6 1.2E-15 4E-20 118.4 9.0 77 4-82 118-196 (198)
247 2hvz_A Splicing factor, argini 99.6 2.4E-15 8.2E-20 103.7 9.6 74 109-187 1-74 (101)
248 2do0_A HnRNP M, heterogeneous 99.6 1.9E-14 6.5E-19 101.4 14.4 78 104-185 11-91 (114)
249 2do4_A Squamous cell carcinoma 99.6 1.6E-14 5.4E-19 99.3 13.1 80 105-188 14-96 (100)
250 2x1f_A MRNA 3'-END-processing 99.6 4.1E-15 1.4E-19 101.5 10.0 76 108-187 2-81 (96)
251 2dng_A Eukaryotic translation 99.6 1.2E-14 4.2E-19 100.4 12.6 80 103-188 10-93 (103)
252 1x5t_A Splicing factor 3B subu 99.6 4.3E-15 1.5E-19 101.4 10.1 78 107-188 4-86 (96)
253 3bs9_A Nucleolysin TIA-1 isofo 99.6 5.5E-15 1.9E-19 98.9 10.4 70 107-176 5-78 (87)
254 2adc_A Polypyrimidine tract-bi 99.6 2.9E-15 1E-19 118.9 10.5 77 4-82 149-227 (229)
255 2jvo_A Nucleolar protein 3; nu 99.6 4.3E-15 1.5E-19 103.5 10.0 77 104-188 27-103 (108)
256 1u6f_A Tcubp1, RNA-binding pro 99.6 3.1E-14 1.1E-18 103.9 15.0 82 103-188 37-122 (139)
257 2kxn_B Transformer-2 protein h 99.6 4.8E-15 1.6E-19 106.6 10.4 80 104-187 42-125 (129)
258 2cpd_A Apobec-1 stimulating pr 99.6 2.1E-14 7.1E-19 98.5 13.1 77 104-188 11-89 (99)
259 3mdf_A Peptidyl-prolyl CIS-tra 99.6 5.8E-15 2E-19 98.4 10.0 71 106-176 5-79 (85)
260 1wf1_A RNA-binding protein RAL 99.6 2E-14 6.8E-19 100.6 13.2 73 106-186 25-98 (110)
261 1wex_A Hypothetical protein (r 99.6 9.2E-15 3.2E-19 100.8 11.2 76 105-186 12-89 (104)
262 3md1_A Nuclear and cytoplasmic 99.6 9.3E-15 3.2E-19 96.9 10.9 75 109-187 2-80 (83)
263 2dgv_A HnRNP M, heterogeneous 99.6 5.5E-15 1.9E-19 100.0 9.9 73 105-177 5-79 (92)
264 2cpx_A Hypothetical protein FL 99.6 1.1E-14 3.7E-19 102.8 11.9 79 106-188 23-105 (115)
265 3tyt_A Heterogeneous nuclear r 99.6 1.5E-15 5.1E-20 118.2 7.8 77 4-80 121-204 (205)
266 2dnh_A Bruno-like 5, RNA bindi 99.6 1.3E-14 4.4E-19 100.7 11.8 68 106-173 13-83 (105)
267 2cpi_A CCR4-NOT transcription 99.6 5.2E-15 1.8E-19 103.7 9.8 80 105-188 12-101 (111)
268 2d9o_A DNAJ (HSP40) homolog, s 99.6 1.5E-14 5.2E-19 98.7 11.7 77 4-84 8-91 (100)
269 1h2v_Z 20 kDa nuclear CAP bind 99.6 1.2E-14 3.9E-19 108.4 12.1 78 106-187 37-118 (156)
270 2cqh_A IGF-II mRNA-binding pro 99.6 4.7E-15 1.6E-19 100.6 9.1 76 106-188 6-83 (93)
271 2cpj_A Non-POU domain-containi 99.6 9.9E-15 3.4E-19 100.2 10.8 77 105-187 12-88 (99)
272 2kvi_A Nuclear polyadenylated 99.6 8.3E-15 2.9E-19 99.9 10.2 72 106-181 8-80 (96)
273 2ytc_A PRE-mRNA-splicing facto 99.6 1E-14 3.6E-19 97.1 10.3 70 104-175 8-78 (85)
274 1p27_B RNA-binding protein 8A; 99.6 1.4E-14 4.7E-19 100.8 11.3 74 105-178 20-97 (106)
275 2fc9_A NCL protein; structure 99.6 6.3E-15 2.2E-19 101.5 9.3 80 105-188 12-91 (101)
276 2kt5_A RNA and export factor-b 99.6 4E-14 1.4E-18 101.3 13.8 77 103-179 30-109 (124)
277 2dhg_A TRNA selenocysteine ass 99.6 2.4E-14 8.4E-19 99.1 12.3 80 104-187 5-89 (104)
278 2lxi_A RNA-binding protein 10; 99.6 2.6E-15 9E-20 101.3 6.9 76 109-188 2-83 (91)
279 2la6_A RNA-binding protein FUS 99.6 2.4E-14 8.1E-19 98.2 11.9 76 103-178 8-95 (99)
280 1sjr_A Polypyrimidine tract-bi 99.6 1.3E-14 4.5E-19 107.1 11.0 79 107-187 45-123 (164)
281 2la4_A Nuclear and cytoplasmic 99.6 1.1E-14 3.7E-19 100.3 10.0 74 107-186 26-99 (101)
282 3ulh_A THO complex subunit 4; 99.6 1.9E-14 6.6E-19 100.2 11.4 77 103-179 24-103 (107)
283 3tht_A Alkylated DNA repair pr 99.6 4.6E-15 1.6E-19 123.0 9.4 77 2-81 14-97 (345)
284 2dh8_A DAZ-associated protein 99.6 3E-14 1E-18 98.9 12.1 82 103-189 11-96 (105)
285 2ywk_A Putative RNA-binding pr 99.6 1.9E-14 6.4E-19 98.0 10.9 78 103-184 11-91 (95)
286 1oo0_B CG8781-PA, drosophila Y 99.6 1.4E-14 4.7E-19 101.4 10.5 80 104-187 22-105 (110)
287 2cpe_A RNA-binding protein EWS 99.6 2.3E-14 7.8E-19 100.8 11.5 80 105-188 12-103 (113)
288 1x4b_A Heterogeneous nuclear r 99.6 3.3E-14 1.1E-18 100.5 12.2 79 106-189 25-107 (116)
289 1s79_A Lupus LA protein; RRM, 99.6 1.5E-14 5.1E-19 99.7 10.1 74 106-180 9-85 (103)
290 1x4e_A RNA binding motif, sing 99.6 3E-15 1E-19 99.8 6.4 69 107-175 4-76 (85)
291 2err_A Ataxin-2-binding protei 99.6 9.3E-15 3.2E-19 102.1 9.2 78 104-185 25-104 (109)
292 2lkz_A RNA-binding protein 5; 99.6 5.3E-15 1.8E-19 100.2 7.7 77 106-186 7-93 (95)
293 2cqd_A RNA-binding region cont 99.6 5E-14 1.7E-18 99.6 13.0 78 103-185 12-93 (116)
294 2khc_A Testis-specific RNP-typ 99.6 2.1E-14 7.2E-19 101.8 10.9 75 103-177 35-113 (118)
295 2jrs_A RNA-binding protein 39; 99.6 2.5E-14 8.6E-19 99.6 11.1 78 105-186 23-104 (108)
296 2e44_A Insulin-like growth fac 99.6 1.5E-14 5E-19 98.7 9.6 73 105-177 12-85 (96)
297 1whx_A Hypothetical protein ri 99.6 1E-14 3.5E-19 102.2 9.0 71 106-178 8-78 (111)
298 2xnq_A Nuclear polyadenylated 99.6 2.1E-14 7.3E-19 98.0 10.3 74 104-185 18-92 (97)
299 2m2b_A RNA-binding protein 10; 99.6 1.5E-14 5.1E-19 104.5 10.0 78 105-187 20-107 (131)
300 2a3j_A U1 small nuclear ribonu 99.6 1.8E-14 6.2E-19 102.9 10.1 72 105-176 26-102 (127)
301 1x5p_A Negative elongation fac 99.6 8.1E-14 2.8E-18 95.2 12.9 77 105-189 12-88 (97)
302 1x4f_A Matrin 3; structural ge 99.6 1.5E-14 5.1E-19 100.5 9.1 72 105-178 22-96 (112)
303 3p5t_L Cleavage and polyadenyl 99.6 6.1E-15 2.1E-19 99.3 7.0 68 109-176 2-75 (90)
304 2cqp_A RNA-binding protein 12; 99.6 1.8E-14 6.2E-19 98.7 9.3 72 105-176 12-87 (98)
305 2e5g_A U6 snRNA-specific termi 99.6 5.4E-14 1.9E-18 95.5 11.5 73 107-185 7-79 (94)
306 2dgw_A Probable RNA-binding pr 99.6 4.9E-14 1.7E-18 95.1 11.0 77 105-187 7-86 (91)
307 2krb_A Eukaryotic translation 99.6 8.9E-15 3E-19 96.5 7.1 66 109-174 2-75 (81)
308 3ns6_A Eukaryotic translation 99.6 1.6E-14 5.4E-19 99.3 8.5 73 107-179 5-88 (100)
309 1jmt_A Splicing factor U2AF 35 99.5 1.4E-15 4.9E-20 105.0 3.0 69 12-80 21-103 (104)
310 2e5i_A Heterogeneous nuclear r 99.5 1.8E-13 6.1E-18 96.9 13.8 76 108-187 25-101 (124)
311 3ue2_A Poly(U)-binding-splicin 99.5 1.4E-14 4.6E-19 102.1 7.9 78 4-81 18-107 (118)
312 2cqg_A TDP-43, TAR DNA-binding 99.5 2E-13 7E-18 94.2 13.7 80 103-188 10-93 (103)
313 3ucg_A Polyadenylate-binding p 99.5 4E-14 1.4E-18 95.1 9.8 75 108-187 6-84 (89)
314 3s7r_A Heterogeneous nuclear r 99.5 3.8E-14 1.3E-18 94.8 9.7 70 105-175 8-81 (87)
315 3lqv_A PRE-mRNA branch site pr 99.5 5.7E-14 2E-18 99.1 11.0 73 106-178 6-79 (115)
316 3s6e_A RNA-binding protein 39; 99.5 2.9E-14 9.8E-19 99.7 9.3 77 4-81 5-91 (114)
317 2hgn_A Heterogeneous nuclear r 99.5 5E-15 1.7E-19 107.4 5.4 113 46-178 2-117 (139)
318 2cq2_A Hypothetical protein LO 99.5 2E-14 6.9E-19 99.9 8.0 64 106-171 23-88 (114)
319 1p1t_A Cleavage stimulation fa 99.5 2.7E-14 9.3E-19 98.9 8.7 71 106-176 6-80 (104)
320 2diu_A KIAA0430 protein; struc 99.5 5.6E-14 1.9E-18 92.8 9.6 70 108-187 9-83 (96)
321 2cq4_A RNA binding motif prote 99.5 1.3E-14 4.6E-19 102.2 7.1 76 105-185 22-101 (114)
322 1fjc_A Nucleolin RBD2, protein 99.5 2.2E-14 7.4E-19 97.9 7.8 79 105-188 13-91 (96)
323 2rs2_A Musashi-1, RNA-binding 99.5 5.9E-14 2E-18 97.9 10.1 78 106-188 23-104 (109)
324 3n9u_C Cleavage and polyadenyl 99.5 5.3E-14 1.8E-18 104.4 10.4 70 107-176 54-129 (156)
325 1wg5_A Heterogeneous nuclear r 99.5 5.5E-14 1.9E-18 97.3 9.8 75 103-178 10-88 (104)
326 2jwn_A Embryonic polyadenylate 99.5 5.5E-14 1.9E-18 100.6 10.1 76 107-187 35-114 (124)
327 1nu4_A U1A RNA binding domain; 99.5 2.5E-14 8.5E-19 97.8 7.8 79 105-187 5-88 (97)
328 1wez_A HnRNP H', FTP-3, hetero 99.5 7.6E-14 2.6E-18 96.1 10.1 74 104-179 11-87 (102)
329 2nlw_A Eukaryotic translation 99.5 5E-14 1.7E-18 97.7 8.9 77 107-186 14-98 (105)
330 2ek1_A RNA-binding protein 12; 99.5 2.6E-14 9E-19 97.2 7.3 70 106-175 13-86 (95)
331 2j76_E EIF-4B, EIF4B, eukaryot 99.5 1.6E-14 5.5E-19 99.3 6.0 72 104-177 15-91 (100)
332 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 1.6E-13 5.5E-18 100.3 11.7 73 103-175 58-134 (140)
333 1x5o_A RNA binding motif, sing 99.5 2.7E-13 9.1E-18 95.5 12.4 81 106-186 23-110 (114)
334 2f3j_A RNA and export factor b 99.5 2.1E-13 7.2E-18 103.4 12.7 78 104-181 84-164 (177)
335 2dnn_A RNA-binding protein 12; 99.5 9.6E-14 3.3E-18 96.5 9.9 71 104-176 12-85 (109)
336 2mss_A Protein (musashi1); RNA 99.5 2.7E-14 9.1E-19 92.7 6.6 66 110-176 1-70 (75)
337 3sde_A Paraspeckle component 1 99.5 4.7E-14 1.6E-18 114.1 9.3 80 4-83 94-179 (261)
338 1uaw_A Mouse-musashi-1; RNP-ty 99.5 2.7E-14 9.3E-19 93.2 6.2 69 109-178 1-73 (77)
339 2hzc_A Splicing factor U2AF 65 99.5 1.1E-13 3.7E-18 92.5 9.3 67 106-175 4-81 (87)
340 2dis_A Unnamed protein product 99.5 8.7E-14 3E-18 97.2 9.2 77 107-187 7-91 (109)
341 3zzy_A Polypyrimidine tract-bi 99.5 1.6E-13 5.4E-18 97.6 10.5 79 106-187 26-105 (130)
342 2cpy_A RNA-binding protein 12; 99.5 7.1E-14 2.4E-18 98.4 8.3 73 105-178 12-88 (114)
343 3d2w_A TAR DNA-binding protein 99.5 1.1E-13 3.8E-18 92.8 8.8 77 104-187 7-83 (89)
344 2fc8_A NCL protein; structure 99.5 3.6E-13 1.2E-17 92.8 11.3 78 104-188 11-92 (102)
345 1wg1_A KIAA1579 protein, homol 99.5 6.7E-14 2.3E-18 93.8 7.3 72 107-185 4-75 (88)
346 1fj7_A Nucleolin RBD1, protein 99.5 1.5E-13 5.2E-18 94.5 8.7 77 106-187 15-94 (101)
347 2db1_A Heterogeneous nuclear r 99.5 2E-13 6.8E-18 96.6 9.5 74 104-178 13-92 (118)
348 2ki2_A SS-DNA binding protein 99.5 3.9E-14 1.3E-18 95.4 5.3 70 109-179 2-75 (90)
349 1wel_A RNA-binding protein 12; 99.5 1.6E-13 5.4E-18 98.1 8.7 76 104-180 21-100 (124)
350 2hgl_A HNRPF protein, heteroge 99.5 1.4E-13 5E-18 99.4 8.2 75 103-178 39-119 (136)
351 2lmi_A GRSF-1, G-rich sequence 99.5 1.1E-13 3.6E-18 96.3 7.2 75 104-179 7-87 (107)
352 1wf0_A TDP-43, TAR DNA-binding 99.5 1.3E-13 4.5E-18 92.3 7.4 74 107-189 4-79 (88)
353 3egn_A RNA-binding protein 40; 99.5 2.7E-13 9.2E-18 99.4 9.6 79 106-188 43-130 (143)
354 1iqt_A AUF1, heterogeneous nuc 99.5 9E-14 3.1E-18 90.2 6.3 67 110-177 1-71 (75)
355 3q2s_C Cleavage and polyadenyl 99.5 2.3E-13 7.9E-18 107.5 9.1 74 107-180 67-146 (229)
356 2bz2_A Negative elongation fac 99.5 3.7E-13 1.3E-17 95.6 9.2 75 105-187 36-110 (121)
357 2hgm_A HNRPF protein, heteroge 99.4 4.3E-13 1.5E-17 95.4 8.1 74 104-179 38-116 (126)
358 2lcw_A RNA-binding protein FUS 99.1 1.5E-14 5.2E-19 102.2 0.0 78 106-187 5-94 (116)
359 2dha_A FLJ20171 protein; RRM d 99.4 6E-13 2E-17 94.4 8.2 72 106-178 21-99 (123)
360 2xs2_A Deleted in azoospermia- 99.4 1.1E-12 3.7E-17 90.4 7.7 71 105-177 6-79 (102)
361 2dnl_A Cytoplasmic polyadenyla 99.4 6.8E-13 2.3E-17 93.3 6.7 61 106-167 6-73 (114)
362 2dit_A HIV TAT specific factor 99.4 9.7E-12 3.3E-16 87.1 11.8 79 105-187 12-101 (112)
363 2j8a_A Histone-lysine N-methyl 99.4 1.6E-12 5.4E-17 90.9 7.6 70 109-178 3-90 (136)
364 2pe8_A Splicing factor 45; RRM 99.4 6.4E-12 2.2E-16 86.6 9.9 73 106-178 6-88 (105)
365 3u1l_A PRE-mRNA-splicing facto 99.4 1.9E-12 6.3E-17 102.0 8.1 65 105-171 131-204 (240)
366 1owx_A Lupus LA protein, SS-B, 99.3 6.2E-12 2.1E-16 87.9 9.6 75 4-81 16-94 (121)
367 2voo_A Lupus LA protein; RNA-b 99.3 3.1E-11 1.1E-15 92.8 13.1 71 107-178 108-181 (193)
368 2dnr_A Synaptojanin-1; RRM dom 99.3 2.8E-11 9.4E-16 79.3 9.0 76 3-84 4-87 (91)
369 3tht_A Alkylated DNA repair pr 99.2 1.6E-11 5.3E-16 101.9 7.6 67 104-172 14-82 (345)
370 3v4m_A Splicing factor U2AF 65 99.2 4.3E-11 1.5E-15 82.5 8.1 73 107-179 4-92 (105)
371 3s6e_A RNA-binding protein 39; 99.2 1.2E-10 4.2E-15 81.2 9.5 74 107-180 6-89 (114)
372 3ue2_A Poly(U)-binding-splicin 99.2 8.5E-11 2.9E-15 82.6 8.2 74 107-180 19-105 (118)
373 1owx_A Lupus LA protein, SS-B, 99.2 1.7E-10 5.8E-15 80.6 8.9 76 103-180 13-92 (121)
374 2d9o_A DNAJ (HSP40) homolog, s 99.1 4.2E-10 1.4E-14 76.6 9.7 65 117-188 26-90 (100)
375 1jmt_A Splicing factor U2AF 35 99.1 2.3E-11 7.9E-16 83.7 3.4 66 113-178 20-100 (104)
376 1ufw_A Synaptojanin 2; RNP dom 99.1 3.1E-10 1.1E-14 74.6 7.1 72 3-80 12-92 (95)
377 3dxb_A Thioredoxin N-terminall 99.0 1.2E-09 4.2E-14 85.9 7.3 76 6-81 124-211 (222)
378 2dnr_A Synaptojanin-1; RRM dom 98.9 8.3E-09 2.8E-13 67.5 7.8 69 107-180 6-82 (91)
379 2l9w_A U4/U6 snRNA-associated- 98.8 5.9E-08 2E-12 65.0 9.2 70 6-78 21-95 (117)
380 1ufw_A Synaptojanin 2; RNP dom 98.7 5.2E-08 1.8E-12 64.0 7.4 66 106-176 13-87 (95)
381 1wey_A Calcipressin 1; structu 98.6 5.2E-07 1.8E-11 60.3 9.2 76 4-82 3-83 (104)
382 2dhx_A Poly (ADP-ribose) polym 98.6 1.3E-06 4.5E-11 58.1 10.9 89 4-121 6-99 (104)
383 3dxb_A Thioredoxin N-terminall 98.4 8.3E-07 2.8E-11 69.6 7.7 61 120-180 141-209 (222)
384 1uw4_A UPF3X; nonsense mediate 98.4 3.8E-06 1.3E-10 55.3 9.1 76 7-82 2-87 (91)
385 2l9w_A U4/U6 snRNA-associated- 98.3 1.1E-05 3.9E-10 54.0 9.6 68 107-176 20-92 (117)
386 1wwh_A Nucleoporin 35, nucleop 98.0 3.6E-05 1.2E-09 53.0 8.0 70 6-80 24-94 (119)
387 1whv_A Poly(A)-specific ribonu 98.0 2.5E-05 8.5E-10 51.3 6.8 55 6-66 16-70 (100)
388 2l08_A Regulator of nonsense t 97.9 3.5E-05 1.2E-09 51.0 6.7 77 5-81 8-94 (97)
389 3ctr_A Poly(A)-specific ribonu 97.8 3.9E-05 1.3E-09 50.5 5.6 54 7-66 7-60 (101)
390 1whv_A Poly(A)-specific ribonu 97.6 0.00047 1.6E-08 45.3 8.6 55 108-167 16-70 (100)
391 1uw4_A UPF3X; nonsense mediate 97.5 0.00099 3.4E-08 43.7 8.5 68 109-176 2-75 (91)
392 1wey_A Calcipressin 1; structu 97.4 0.00042 1.4E-08 46.3 6.2 69 109-179 6-79 (104)
393 1wwh_A Nucleoporin 35, nucleop 97.3 0.0018 6.1E-08 44.5 8.1 65 105-173 21-85 (119)
394 3ctr_A Poly(A)-specific ribonu 97.2 0.00032 1.1E-08 46.2 3.8 54 109-167 7-60 (101)
395 3p3d_A Nucleoporin 53; structu 97.2 0.00075 2.6E-08 47.1 5.9 74 5-80 6-96 (132)
396 2dhx_A Poly (ADP-ribose) polym 97.1 0.0032 1.1E-07 41.9 8.1 61 108-173 8-73 (104)
397 3pq1_A Poly(A) RNA polymerase; 96.9 0.00063 2.2E-08 58.4 3.9 56 5-63 52-107 (464)
398 2l08_A Regulator of nonsense t 96.5 0.0058 2E-07 40.3 5.3 70 108-177 9-84 (97)
399 3p3d_A Nucleoporin 53; structu 95.2 0.02 6.7E-07 40.0 3.8 67 107-175 6-90 (132)
400 3pq1_A Poly(A) RNA polymerase; 94.6 0.019 6.6E-07 49.3 3.2 56 107-164 52-107 (464)
401 3d45_A Poly(A)-specific ribonu 94.0 0.14 4.7E-06 44.9 7.3 55 6-66 440-494 (507)
402 2g0c_A ATP-dependent RNA helic 92.5 0.58 2E-05 29.1 6.7 68 8-81 2-75 (76)
403 3d45_A Poly(A)-specific ribonu 90.0 1.1 3.9E-05 39.1 8.1 56 108-168 440-495 (507)
404 4e8u_A Putative uncharacterize 74.0 6.2 0.00021 28.8 5.1 56 8-63 14-81 (172)
405 4eyt_A Telomerase associated p 72.1 16 0.00055 23.2 8.2 69 4-79 10-78 (129)
406 4eyt_A Telomerase associated p 65.9 23 0.00078 22.5 8.0 56 107-166 11-66 (129)
407 3ts2_A Protein LIN-28 homolog 64.6 1.2 4E-05 31.9 -0.3 28 21-53 2-29 (148)
408 3lpe_A Putative transcription 50.4 47 0.0016 21.2 8.1 33 33-67 40-72 (92)
409 2e5p_A Protein PHF1, PHD finge 40.8 15 0.0005 22.0 1.7 20 31-55 28-47 (68)
410 3h7h_B Transcription elongatio 40.0 30 0.001 23.0 3.4 36 32-69 40-75 (106)
411 3j21_T 50S ribosomal protein L 39.5 71 0.0024 20.2 6.4 55 9-63 25-81 (86)
412 3fry_A Probable copper-exporti 36.5 64 0.0022 18.8 5.5 55 6-64 6-60 (73)
413 1vq8_S 50S ribosomal protein L 35.8 82 0.0028 19.9 5.7 55 9-63 24-80 (85)
414 2m0o_A PHD finger protein 1; t 33.9 21 0.00073 21.9 1.7 12 45-56 54-65 (79)
415 4bby_A Alkyldihydroxyacetoneph 33.6 35 0.0012 30.8 3.9 54 13-66 350-409 (658)
416 3j21_T 50S ribosomal protein L 32.7 95 0.0032 19.6 5.8 56 111-166 25-83 (86)
417 3fut_A Dimethyladenosine trans 32.3 39 0.0013 26.6 3.6 30 7-37 111-140 (271)
418 2eqj_A Metal-response element- 30.7 27 0.00092 20.9 1.8 12 44-55 40-51 (66)
419 2cs4_A Protein C12ORF2; GTP bi 30.2 34 0.0012 22.2 2.3 22 11-32 21-43 (95)
420 4a17_R RPL23A, 60S ribosomal p 29.6 1.5E+02 0.0051 21.0 5.9 54 10-63 90-145 (150)
421 2zkr_s 60S ribosomal protein L 29.5 1.4E+02 0.0048 21.3 5.6 54 10-63 96-151 (156)
422 1nz8_A Transcription antitermi 28.9 1.3E+02 0.0044 20.0 6.8 24 44-67 61-89 (119)
423 3u5e_X 60S ribosomal protein L 28.5 1.5E+02 0.005 20.8 5.5 54 10-63 82-137 (142)
424 2ns6_A Mobilization protein A; 28.4 95 0.0033 22.8 4.9 46 10-55 74-127 (185)
425 3uzu_A Ribosomal RNA small sub 28.3 23 0.00079 28.0 1.6 32 7-38 115-146 (279)
426 3swz_A Steroid 17-alpha-hydrox 28.1 73 0.0025 27.0 4.9 59 9-74 17-79 (494)
427 2e5q_A PHD finger protein 19; 27.4 12 0.00042 21.9 -0.1 13 44-56 34-46 (63)
428 3iz5_X 60S ribosomal protein L 27.4 1.2E+02 0.0041 21.5 5.0 54 10-63 92-147 (152)
429 2exu_A Transcription initiatio 27.0 61 0.0021 24.3 3.6 35 33-69 139-173 (200)
430 3u5e_X 60S ribosomal protein L 26.5 1.6E+02 0.0056 20.6 5.4 57 110-166 80-139 (142)
431 2k5n_A Putative cold-shock pro 25.9 28 0.00097 21.3 1.4 11 44-54 13-23 (74)
432 2rf4_B DNA-directed RNA polyme 25.7 59 0.002 20.5 2.7 27 4-30 17-43 (87)
433 2kcm_A Cold shock domain famil 25.7 25 0.00085 21.6 1.1 39 44-82 11-54 (74)
434 2od0_A Hypothetical protein VP 25.4 65 0.0022 21.0 3.2 22 18-39 4-25 (105)
435 2w7a_A LINE-1 ORF1P; RNA-bindi 25.2 1.3E+02 0.0045 19.6 4.6 73 6-78 3-98 (100)
436 1eij_A Hypothetical protein MT 24.9 50 0.0017 20.6 2.4 20 12-31 50-69 (80)
437 4a17_R RPL23A, 60S ribosomal p 24.5 1.8E+02 0.0061 20.6 5.4 57 110-166 88-147 (150)
438 3tbg_A Cytochrome P450 2D6; mo 22.7 55 0.0019 27.5 3.1 56 10-72 20-78 (479)
439 3cam_A Cold-shock domain famil 22.4 37 0.0013 20.3 1.4 11 44-54 12-22 (67)
440 1c9o_A CSPB, cold-shock protei 22.1 38 0.0013 20.1 1.4 11 44-54 12-22 (66)
441 4a4j_A Pacszia, cation-transpo 21.9 1.2E+02 0.004 17.1 5.2 54 7-63 4-60 (69)
442 3a0j_A Cold shock protein; OB- 21.0 40 0.0014 20.5 1.4 11 44-54 12-22 (73)
443 4hcz_A PHD finger protein 1; p 20.9 55 0.0019 18.9 1.8 12 45-56 31-42 (58)
444 1qyr_A KSGA, high level kasuga 20.9 68 0.0023 24.8 3.0 27 7-33 91-117 (252)
445 1i4w_A Mitochondrial replicati 20.7 63 0.0021 26.6 2.9 22 8-29 144-165 (353)
446 1wvf_A 4-cresol dehydrogenase 20.6 65 0.0022 28.0 3.1 41 22-62 217-261 (520)
447 3p8b_B Transcription antitermi 20.6 83 0.0028 22.1 3.2 34 33-68 33-66 (152)
448 3ftd_A Dimethyladenosine trans 20.3 60 0.0021 25.0 2.6 27 7-33 96-122 (249)
449 2fh0_A Hypothetical 16.0 kDa p 20.2 58 0.002 20.4 1.9 19 12-30 48-66 (81)
450 1cqm_A Ribosomal protein S6; a 20.1 1.4E+02 0.0046 19.3 3.9 50 14-63 10-76 (101)
451 1g6p_A Cold shock protein TMCS 20.0 44 0.0015 19.8 1.4 11 44-54 11-21 (66)
No 1
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=100.00 E-value=7.7e-34 Score=221.91 Aligned_cols=178 Identities=15% Similarity=0.218 Sum_probs=143.2
Q ss_pred CCCCeEEEcCCC-CCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEccC
Q 024135 4 RASRTLYVGNLP-GDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (272)
Q Consensus 4 ~~~~~l~v~nL~-~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~ 82 (272)
.++++|||+||| ..+|+++|.++|+.||.|.+|++..+ .+|||||+|.+.++|+.|+..|||..|.|+.|.|.+++.
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~--~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~ 79 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS--KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQ 79 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT--STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC--CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccC
Confidence 478999999999 79999999999999999999999754 479999999999999999999999999999999999975
Q ss_pred CCCCCCCC--CCC------CCCCC---C-------CCCCCCCccceEEEcCCCCCCCHHHHHHHHHhcCCe--eEEEEEe
Q 024135 83 GRGRSSSD--RHS------SHSSG---R-------GRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDV--CFSQVFR 142 (272)
Q Consensus 83 ~~~~~~~~--~~~------~~~~~---~-------~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i--~~~~~~~ 142 (272)
....+... ... ..... . .......+..+|||+|||..+++++|+++|.+||.| ..+.++.
T Consensus 80 ~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~ 159 (205)
T 3tyt_A 80 PAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFS 159 (205)
T ss_dssp SCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECS
T ss_pred CccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEc
Confidence 43211100 000 00000 0 000112456789999999999999999999999999 8898887
Q ss_pred cC--CCCeEEEEeCCHHHHHHHHHHhcCcccccceeeeEEEee
Q 024135 143 DG--SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVR 183 (272)
Q Consensus 143 ~~--~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~~ 183 (272)
+. ..++|||+|.+.++|..|+..|||.++.|.....++.+.
T Consensus 160 ~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk 202 (205)
T 3tyt_A 160 GKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLK 202 (205)
T ss_dssp CCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECE
T ss_pred CCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEE
Confidence 74 347999999999999999999999999997665555543
No 2
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=1.8e-34 Score=227.62 Aligned_cols=163 Identities=24% Similarity=0.358 Sum_probs=140.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEE
Q 024135 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (272)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~ 79 (272)
..|++||||+|||+++|+++|+++|++||+|.+|.|.. ++.++|||||+|.+.++|.+|+..||+..+.|+.|.|.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 35789999999999999999999999999999999964 467889999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC--CCeEEEEeCCHH
Q 024135 80 AHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS--GTTGIVDYTNYD 157 (272)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~--~~~~fv~f~~~~ 157 (272)
+...... ......+|||+|||..+++++|.++|..||.|..+.++.+.. .|||||+|.+.+
T Consensus 92 ~~~~~~~-----------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~ 154 (213)
T 4f02_A 92 SQRDPSL-----------------RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQE 154 (213)
T ss_dssp CCCCTHH-----------------HHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHH
T ss_pred ccccccc-----------------cccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHH
Confidence 8643211 112346899999999999999999999999999999988754 469999999999
Q ss_pred HHHHHHHHhcCcccccceeeeEEEeeccc
Q 024135 158 DMKHAIKKLDDSEFRNAFSRAYVRVREYD 186 (272)
Q Consensus 158 ~a~~a~~~l~~~~~~g~~~~~~~~~~~~~ 186 (272)
+|..|++.|||..++| ..|.|....
T Consensus 155 ~a~~Ai~~lng~~~~g----~~i~V~~a~ 179 (213)
T 4f02_A 155 AAERAIEKMNGMLLND----RKVFVGRFK 179 (213)
T ss_dssp HHHHHHHHHTTCEETT----EECEEEECC
T ss_pred HHHHHHHHhCCCEECC----EEEEEEEcC
Confidence 9999999999999999 455555443
No 3
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.3e-33 Score=209.90 Aligned_cols=152 Identities=25% Similarity=0.418 Sum_probs=136.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec--CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEccCCC
Q 024135 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGR 84 (272)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~~ 84 (272)
++|||+|||+++|+++|.++|+.||+|..+.+.. ++.++|||||+|.+.++|.+|+..|||..+.|+.|.|.++....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 5899999999999999999999999999999964 35678999999999999999999999999999999999986543
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CCeEEEEeCCHHHHH
Q 024135 85 GRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMK 160 (272)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~----~~~~fv~f~~~~~a~ 160 (272)
. ....+..+|+|+|||..+++++|.++|++||.|..+.+..+.. .|||||+|.+.++|.
T Consensus 81 ~-----------------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~ 143 (166)
T 3md3_A 81 Q-----------------SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQ 143 (166)
T ss_dssp C-----------------CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHH
T ss_pred C-----------------CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHH
Confidence 2 2223467999999999999999999999999999999998744 359999999999999
Q ss_pred HHHHHhcCcccccce
Q 024135 161 HAIKKLDDSEFRNAF 175 (272)
Q Consensus 161 ~a~~~l~~~~~~g~~ 175 (272)
.|+..|||..++|+.
T Consensus 144 ~A~~~l~g~~~~g~~ 158 (166)
T 3md3_A 144 NAMDSMQGQDLNGRP 158 (166)
T ss_dssp HHHHHHTTCEETTEE
T ss_pred HHHHHhCCCccCCcE
Confidence 999999999999943
No 4
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=1.8e-32 Score=207.97 Aligned_cols=153 Identities=24% Similarity=0.406 Sum_probs=137.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEcc
Q 024135 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (272)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (272)
++++|||+|||+++++++|+++|+.||.|..+.+.. ++.++|||||+|.+.++|..|+..|||..+.|+.|.|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 478999999999999999999999999999999954 56678999999999999999999999999999999999986
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CCeEEEEeCCHH
Q 024135 82 GGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYD 157 (272)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~----~~~~fv~f~~~~ 157 (272)
.... .....+|+|+|||..+++++|.++|.+||.|..+.+..+.. .|||||+|.+.+
T Consensus 81 ~~~~-------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~ 141 (167)
T 1fxl_A 81 PSSA-------------------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 141 (167)
T ss_dssp CCCG-------------------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHH
T ss_pred CCcc-------------------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHH
Confidence 4321 22457899999999999999999999999999999988763 359999999999
Q ss_pred HHHHHHHHhcCccccccee
Q 024135 158 DMKHAIKKLDDSEFRNAFS 176 (272)
Q Consensus 158 ~a~~a~~~l~~~~~~g~~~ 176 (272)
+|..|++.|||..+.|+..
T Consensus 142 ~A~~A~~~l~g~~~~g~~~ 160 (167)
T 1fxl_A 142 EAEEAIKGLNGQKPSGATE 160 (167)
T ss_dssp HHHHHHHHHTTCCCTTCSS
T ss_pred HHHHHHHHhcCCccCCCcc
Confidence 9999999999999999653
No 5
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=2.2e-32 Score=207.74 Aligned_cols=150 Identities=27% Similarity=0.430 Sum_probs=136.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEcc
Q 024135 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (272)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (272)
++++|||+|||+++++++|+++|+.||+|..+.+.. ++.++|||||+|.+.++|..|+..|+|..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 689999999999999999999999999999999953 56688999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CCeEEEEeCCHH
Q 024135 82 GGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYD 157 (272)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~----~~~~fv~f~~~~ 157 (272)
.... .....+|+|+|||..+++++|.++|++||.|..+.+..+.. .|||||+|.+.+
T Consensus 82 ~~~~-------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~ 142 (168)
T 1b7f_A 82 PGGE-------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKRE 142 (168)
T ss_dssp CCSS-------------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHH
T ss_pred CCcc-------------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHH
Confidence 5332 23457999999999999999999999999999999998763 259999999999
Q ss_pred HHHHHHHHhcCccccc
Q 024135 158 DMKHAIKKLDDSEFRN 173 (272)
Q Consensus 158 ~a~~a~~~l~~~~~~g 173 (272)
+|..|+..|||..+.|
T Consensus 143 ~A~~A~~~l~g~~~~g 158 (168)
T 1b7f_A 143 EAQEAISALNNVIPEG 158 (168)
T ss_dssp HHHHHHHHHTTCCCTT
T ss_pred HHHHHHHHhcCCEecC
Confidence 9999999999999987
No 6
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=100.00 E-value=9.5e-32 Score=221.10 Aligned_cols=178 Identities=19% Similarity=0.258 Sum_probs=144.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEE
Q 024135 3 SRASRTLYVGNLPGDIREREVE----DLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (272)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~----~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~ 78 (272)
..++++|||+|||+++|+++|+ ++|+.||.|..|.+..++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 85 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 85 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEE
Confidence 4789999999999999999966 999999999999998888999999999999999999999999999999999999
Q ss_pred EccCCCCCCCCCCCC-----------------------------------------------------------------
Q 024135 79 LAHGGRGRSSSDRHS----------------------------------------------------------------- 93 (272)
Q Consensus 79 ~~~~~~~~~~~~~~~----------------------------------------------------------------- 93 (272)
|+.............
T Consensus 86 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 165 (282)
T 3pgw_A 86 YAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMP 165 (282)
T ss_pred EeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCCC
Confidence 987543210000000
Q ss_pred ---CCCCCC------------------------CCCCCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC
Q 024135 94 ---SHSSGR------------------------GRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG 146 (272)
Q Consensus 94 ---~~~~~~------------------------~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~ 146 (272)
.....+ .......+..+|||+|||..+++++|+++|.+||.|..+.+..+. .
T Consensus 166 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-~ 244 (282)
T 3pgw_A 166 PPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-H 244 (282)
T ss_pred CCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-C
Confidence 000000 000122356789999999999999999999999999999999765 4
Q ss_pred CeEEEEeCCHHHHHHHHHHhcCcccc-cceeeeEEEeecc
Q 024135 147 TTGIVDYTNYDDMKHAIKKLDDSEFR-NAFSRAYVRVREY 185 (272)
Q Consensus 147 ~~~fv~f~~~~~a~~a~~~l~~~~~~-g~~~~~~~~~~~~ 185 (272)
+||||+|.+.++|..|+..|||..+. | ..|.|.+.
T Consensus 245 g~afV~f~~~~~A~~A~~~l~g~~~~~g----~~l~v~~a 280 (282)
T 3pgw_A 245 DIAFVEFDNEVQAGAARDALQGFKITQN----NAMKISFA 280 (282)
T ss_pred cEEEEEeCCHHHHHHHHHHcCCcEeCCC----CEEEEEEe
Confidence 69999999999999999999999999 7 45555443
No 7
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=2.8e-32 Score=212.40 Aligned_cols=166 Identities=14% Similarity=0.288 Sum_probs=137.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEc
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (272)
.++++|||+|||+++|+++|+++|+.||.|.+|.|.. ++.++|||||+|.+.++|.+|+. +++..|.|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN-ARPHKVDGRVVEPKRA 89 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH-TCSCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHh-cCCCEECCEEeeeecc
Confidence 4678999999999999999999999999999999965 46678999999999999999998 5999999999999998
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CCeEEEEeCCH
Q 024135 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNY 156 (272)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~----~~~~fv~f~~~ 156 (272)
........ ........+|||+|||..+++++|.++|..||.|..+.+..+.. .|||||+|.+.
T Consensus 90 ~~~~~~~~-------------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~ 156 (196)
T 1l3k_A 90 VSREDSQR-------------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDH 156 (196)
T ss_dssp CC------------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred cCcccccc-------------cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCH
Confidence 75432211 11223457999999999999999999999999999999998853 35999999999
Q ss_pred HHHHHHHHHhcCcccccceeeeEEEeeccccC
Q 024135 157 DDMKHAIKKLDDSEFRNAFSRAYVRVREYDHR 188 (272)
Q Consensus 157 ~~a~~a~~~l~~~~~~g~~~~~~~~~~~~~~~ 188 (272)
++|..|+.. ++..++| ..|.|....++
T Consensus 157 ~~A~~A~~~-~~~~~~G----~~i~v~~a~~k 183 (196)
T 1l3k_A 157 DSVDKIVIQ-KYHTVNG----HNCEVRKALSK 183 (196)
T ss_dssp HHHHHHHHC-SCCEETT----EECEEEECC--
T ss_pred HHHHHHHHh-CCcEECC----EEEEEEecCCh
Confidence 999999986 7999999 44555554443
No 8
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=100.00 E-value=1e-31 Score=214.23 Aligned_cols=170 Identities=16% Similarity=0.254 Sum_probs=139.1
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEcc
Q 024135 3 SRASRTLYVGNLPG-DIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (272)
Q Consensus 3 ~~~~~~l~v~nL~~-~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (272)
..++++|||+|||+ ++++++|+++|+.||.|..|.|..+. +|||||+|.+.++|++|+..|||..|.|+.|.|.++.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~--~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 108 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK--KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 108 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT--SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCS
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC--CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 35789999999999 99999999999999999999997654 7899999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCC--------------CC--CCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHHhcC-CeeEEEEEecC
Q 024135 82 GGRGRSSSDRHSS--------------HS--SGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDG 144 (272)
Q Consensus 82 ~~~~~~~~~~~~~--------------~~--~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G-~i~~~~~~~~~ 144 (272)
............. .. ..........+..+|||+|||..+++++|+++|.+|| .|..+.++..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~- 187 (229)
T 2adc_A 109 HQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK- 187 (229)
T ss_dssp CCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-
T ss_pred CccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-
Confidence 6532211110000 00 0000011234578999999999999999999999999 9999998654
Q ss_pred CCCeEEEEeCCHHHHHHHHHHhcCcccc-cce
Q 024135 145 SGTTGIVDYTNYDDMKHAIKKLDDSEFR-NAF 175 (272)
Q Consensus 145 ~~~~~fv~f~~~~~a~~a~~~l~~~~~~-g~~ 175 (272)
..+||||+|.+.++|..|+..|+|..++ |+.
T Consensus 188 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~ 219 (229)
T 2adc_A 188 DRKMALIQMGSVEEAVQALIDLHNHDLGENHH 219 (229)
T ss_dssp STTCEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred CCcEEEEEECCHHHHHHHHHHHCCCccCCCCe
Confidence 3579999999999999999999999999 843
No 9
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=100.00 E-value=4.3e-31 Score=206.00 Aligned_cols=176 Identities=22% Similarity=0.387 Sum_probs=140.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcc----C-------CeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCC
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKY----G-------PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG 72 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~----G-------~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g 72 (272)
..+++|||+|||+++|+++|.++|+.| | .|..+.+. .++|||||+|.+.++|.+|+ .|||..|.|
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~---~~~g~afV~F~~~~~A~~Al-~l~g~~~~g 77 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN---QDKNFAFLEFRSVDETTQAM-AFDGIIFQG 77 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE---TTTTEEEEEESCSHHHHHHG-GGTTEEETT
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec---CCCCEEEEEeCCHHHHHHHH-HhcCCEEcC
Confidence 578999999999999999999999999 5 56666654 56899999999999999999 699999999
Q ss_pred ceEEEEEccCCCCCCCCCCC-CCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CC
Q 024135 73 HRLRVELAHGGRGRSSSDRH-SSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GT 147 (272)
Q Consensus 73 ~~i~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~----~~ 147 (272)
+.|.|.++............ ..............+..+|||+|||..+++++|.++|.+||.|..+.+..+.. .|
T Consensus 78 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g 157 (198)
T 2yh0_A 78 QSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKG 157 (198)
T ss_dssp EEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEE
T ss_pred ceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcce
Confidence 99999998765433221111 11111111222335678999999999999999999999999999999998863 35
Q ss_pred eEEEEeCCHHHHHHHHHHhcCcccccceeeeEEEeecccc
Q 024135 148 TGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYDH 187 (272)
Q Consensus 148 ~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~~~~~~ 187 (272)
||||+|.+.++|..|++.|||..++| ..+.|....+
T Consensus 158 ~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~a~~ 193 (198)
T 2yh0_A 158 YAFCEYVDINVTDQAIAGLNGMQLGD----KKLLVQRASV 193 (198)
T ss_dssp EEEEEESSSSHHHHHHHHHTTCEETT----EECEEEESCC
T ss_pred EEEEEECCHHHHHHHHHHcCCCEECC----EEEEEEECCC
Confidence 99999999999999999999999999 5555555544
No 10
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=100.00 E-value=1.3e-31 Score=209.02 Aligned_cols=170 Identities=17% Similarity=0.259 Sum_probs=139.2
Q ss_pred CCCeEEEcCCCC-CCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEccCC
Q 024135 5 ASRTLYVGNLPG-DIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (272)
Q Consensus 5 ~~~~l~v~nL~~-~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~ 83 (272)
.+++|||+|||+ ++++++|+++|+.||.|..|.+..+. +|||||+|.+.++|..|+..|||..|.|+.|.|.++...
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~--~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~ 79 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK--KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 79 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC--SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCC
Confidence 468999999999 99999999999999999999997654 789999999999999999999999999999999999865
Q ss_pred CCCCCCCCCCC--------------C--CCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHHhcC-CeeEEEEEecCCC
Q 024135 84 RGRSSSDRHSS--------------H--SSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDGSG 146 (272)
Q Consensus 84 ~~~~~~~~~~~--------------~--~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G-~i~~~~~~~~~~~ 146 (272)
........... . ...........+..+|+|+|||..+++++|.++|.+|| .|..+.+..+. .
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-~ 158 (198)
T 1qm9_A 80 NVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-R 158 (198)
T ss_dssp SCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-S
T ss_pred CcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-C
Confidence 32211110000 0 00001111234578999999999999999999999999 99999997653 6
Q ss_pred CeEEEEeCCHHHHHHHHHHhcCcccc-cceee
Q 024135 147 TTGIVDYTNYDDMKHAIKKLDDSEFR-NAFSR 177 (272)
Q Consensus 147 ~~~fv~f~~~~~a~~a~~~l~~~~~~-g~~~~ 177 (272)
++|||+|.+.++|..|+..|||..++ |+.+.
T Consensus 159 g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~ 190 (198)
T 1qm9_A 159 KMALIQMGSVEEAVQALIDLHNHDLGENHHLR 190 (198)
T ss_dssp SCEEEECSSHHHHHHHHHHHTSSCCSSCCSCC
T ss_pred cEEEEEeCCHHHHHHHHHHhcCCccCCCCeEE
Confidence 79999999999999999999999999 75443
No 11
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=1.3e-31 Score=204.73 Aligned_cols=151 Identities=17% Similarity=0.324 Sum_probs=132.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecC---C--CCCceEEEEecChHHHHHHHHhcCCcccC---CceEE
Q 024135 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---P--RPPGYAFVEFEEARDAEDAIRGRDGYDFD---GHRLR 76 (272)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~---~--~~~g~afV~f~~~~~a~~a~~~l~g~~~~---g~~i~ 76 (272)
++++|||+|||+++|+++|+++|+.||+|..+.+..+ + .++|||||+|.+.++|.+|+..|||..+. +..+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 5789999999999999999999999999999999543 2 67899999999999999999999998876 67888
Q ss_pred EEEccCCCCCCCCCCCCCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC---CCeEEEEe
Q 024135 77 VELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDY 153 (272)
Q Consensus 77 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~---~~~~fv~f 153 (272)
+.++..... ......+|||+|||..+++++|+++|++||.|..+.+..+.. .|||||+|
T Consensus 82 ~~~~~~~~~------------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f 143 (175)
T 3nmr_A 82 MKPADSEKN------------------NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTF 143 (175)
T ss_dssp EEECGGGCC------------------SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEE
T ss_pred Ecccccccc------------------ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEE
Confidence 888764331 223567999999999999999999999999999999998865 35999999
Q ss_pred CCHHHHHHHHHHhcCccccc
Q 024135 154 TNYDDMKHAIKKLDDSEFRN 173 (272)
Q Consensus 154 ~~~~~a~~a~~~l~~~~~~g 173 (272)
.+.++|..|++.|||..+.+
T Consensus 144 ~~~~~A~~A~~~l~g~~~~~ 163 (175)
T 3nmr_A 144 TTRAMAQTAIKAMHQAQTME 163 (175)
T ss_dssp SSHHHHHHHHHHHTTSCCCT
T ss_pred CCHHHHHHHHHHhcCCcccC
Confidence 99999999999999987764
No 12
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=4.7e-31 Score=208.53 Aligned_cols=170 Identities=21% Similarity=0.329 Sum_probs=139.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEcc
Q 024135 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (272)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (272)
++++|||+|||+++|+++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 457999999999999999999999999999999954 46789999999999999999999999999999999998875
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CCeEEEEeCCHH
Q 024135 82 GGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYD 157 (272)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~----~~~~fv~f~~~~ 157 (272)
.......... ..........+|||+|||..+++++|.++|.+||.|..+.+..+.. .+||||+|.+.+
T Consensus 107 ~~~~~~~~~~--------~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~ 178 (216)
T 2qfj_A 107 NIGQAQPIID--------QLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQ 178 (216)
T ss_dssp CCGGGHHHHH--------HHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHH
T ss_pred Cccccchhhh--------hhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHH
Confidence 4321100000 0000112347999999999999999999999999999999998853 459999999999
Q ss_pred HHHHHHHHhcCcccccceeeeEEEeeccc
Q 024135 158 DMKHAIKKLDDSEFRNAFSRAYVRVREYD 186 (272)
Q Consensus 158 ~a~~a~~~l~~~~~~g~~~~~~~~~~~~~ 186 (272)
+|..|+..||+..++|+ .|.|....
T Consensus 179 ~A~~A~~~l~g~~~~g~----~i~V~~a~ 203 (216)
T 2qfj_A 179 SSQDAVSSMNLFDLGGQ----YLRVGKAV 203 (216)
T ss_dssp HHHHHHHHHTTCBCSSS----BCEEEECS
T ss_pred HHHHHHHHccCCEeCCc----EEEEEEec
Confidence 99999999999999994 44444443
No 13
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.98 E-value=2.2e-32 Score=209.22 Aligned_cols=161 Identities=17% Similarity=0.244 Sum_probs=137.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEe--ecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEc
Q 024135 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDL--KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (272)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~--~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (272)
..++++|||+|||+++|+++|+++|..||.|..+.+ ..++.++|||||+|.++++|.+|+. |||..|.|+.|.|.++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~~ 88 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 88 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEecC
Confidence 467899999999999999999999999997766323 3457889999999999999999995 9999999999999998
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHH
Q 024135 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMK 160 (272)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~ 160 (272)
..... .......+|||+|||..+++++|.++|.+||.|..+ .......|||||+|.+.++|.
T Consensus 89 ~~~~~-----------------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~A~ 150 (175)
T 1fje_B 89 KGRDS-----------------KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAE 150 (175)
T ss_dssp CCSSC-----------------STTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-CSSSSCCSEEEEECSSHHHHH
T ss_pred CCccc-----------------cccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-cCCCCCceEEEEEECCHHHHH
Confidence 75432 223456899999999999999999999999998877 333456689999999999999
Q ss_pred HHHHHhcCcccccceeeeEEEeeccc
Q 024135 161 HAIKKLDDSEFRNAFSRAYVRVREYD 186 (272)
Q Consensus 161 ~a~~~l~~~~~~g~~~~~~~~~~~~~ 186 (272)
.|+..|||..++| ..|.|....
T Consensus 151 ~A~~~l~g~~~~g----~~i~v~~a~ 172 (175)
T 1fje_B 151 KNLEEKQGAEIDG----RSVSLYYTG 172 (175)
T ss_dssp HHHHHHTEEEETT----EEEEEEECS
T ss_pred HHHHHhCCCEECC----eEEEEEecC
Confidence 9999999999999 556665543
No 14
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.98 E-value=4.6e-31 Score=201.27 Aligned_cols=150 Identities=23% Similarity=0.439 Sum_probs=133.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcc----C-------CeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCC
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKY----G-------PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG 72 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~----G-------~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g 72 (272)
+++++|||+|||+++|+++|+++|+.| | .|.++.+. .++|||||+|.++++|.+|+ .|||..+.|
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~---~~~g~afV~f~~~~~A~~A~-~~~~~~~~g 77 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN---QDKNFAFLEFRSVDETTQAM-AFDGIIFQG 77 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE---TTTTEEEEEESSHHHHHHHG-GGTTCEETT
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec---CCCCEEEEEeCCHHHHHHHH-HhCCcEecC
Confidence 468999999999999999999999999 6 77777765 45899999999999999999 799999999
Q ss_pred ceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CCe
Q 024135 73 HRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTT 148 (272)
Q Consensus 73 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~----~~~ 148 (272)
+.|.|.++..... .....+|+|+|||..+++++|.++|.+||.|..+.+..+.. .||
T Consensus 78 ~~i~v~~~~~~~~-------------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~ 138 (172)
T 2g4b_A 78 QSLKIRRPHDYQP-------------------LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGY 138 (172)
T ss_dssp EECEEECCSSCCC-------------------CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEE
T ss_pred ceeeecCCcccCC-------------------CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceE
Confidence 9999998754321 12357999999999999999999999999999999998863 359
Q ss_pred EEEEeCCHHHHHHHHHHhcCccccccee
Q 024135 149 GIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (272)
Q Consensus 149 ~fv~f~~~~~a~~a~~~l~~~~~~g~~~ 176 (272)
|||+|.+.++|..|++.|||..++|+.+
T Consensus 139 afV~f~~~~~A~~A~~~l~g~~~~g~~l 166 (172)
T 2g4b_A 139 AFCEYVDINVTDQAIAGLNGMQLGDKKL 166 (172)
T ss_dssp EEEEESSTTHHHHHHHHHTTCEETTEEC
T ss_pred EEEEeCCHHHHHHHHHHcCCCEECCeEE
Confidence 9999999999999999999999999443
No 15
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.97 E-value=1.1e-31 Score=203.68 Aligned_cols=158 Identities=17% Similarity=0.371 Sum_probs=136.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEc
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (272)
+++++|||+|||+++|+++|+++|+.||+|..|.+.. ++.++|||||+|.+.++|.+|+.. +..+.|+.|.|.++
T Consensus 1 k~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~ 78 (167)
T 2cjk_A 1 KESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRA 78 (167)
T ss_dssp CGGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccc
Confidence 4689999999999999999999999999999999964 478899999999999999999994 57889999999887
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CCeEEEEeCCH
Q 024135 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNY 156 (272)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~----~~~~fv~f~~~ 156 (272)
.... ...+..+|||+|||..+++++|.++|++||.|..+.+..+.. .|||||+|.+.
T Consensus 79 ~~~~-------------------~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~ 139 (167)
T 2cjk_A 79 IPRD-------------------EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSA 139 (167)
T ss_dssp CCHH-------------------HHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSH
T ss_pred cchh-------------------hccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCH
Confidence 5321 112456999999999999999999999999999999987743 46999999999
Q ss_pred HHHHHHHHHhcCcccccceeeeEEEeecccc
Q 024135 157 DDMKHAIKKLDDSEFRNAFSRAYVRVREYDH 187 (272)
Q Consensus 157 ~~a~~a~~~l~~~~~~g~~~~~~~~~~~~~~ 187 (272)
++|..|++ +++..++| ..|.|....+
T Consensus 140 ~~a~~A~~-~~~~~~~g----~~i~V~~a~p 165 (167)
T 2cjk_A 140 DAVDRVCQ-NKFIDFKD----RKIEIKRAEP 165 (167)
T ss_dssp HHHHHHHH-CSEECSSS----SCEEEEECCC
T ss_pred HHHHHHHh-CCCEEeCC----eEEEEeecCC
Confidence 99999998 89999999 4555555433
No 16
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=6.8e-30 Score=211.03 Aligned_cols=166 Identities=15% Similarity=0.249 Sum_probs=138.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccC-CeeEEEeecC--CCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEcc
Q 024135 5 ASRTLYVGNLPGDIREREVEDLFYKYG-PIAHIDLKIP--PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (272)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G-~v~~v~~~~~--~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (272)
++++|||+|||+.+++++|.++|+.|| .|..+.+..+ +.++|||||+|.+.++|..|+..|||..|.|+.|.|.++.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 195 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSN 195 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 578999999999999999999999999 9999999543 5678999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCccceEEEcCCCCC-CCHHHHHHHHHhcCCeeEEEEEecCC-----CCeEEEEeCC
Q 024135 82 GGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDGS-----GTTGIVDYTN 155 (272)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~-~~~~~l~~~f~~~G~i~~~~~~~~~~-----~~~~fv~f~~ 155 (272)
+....... ........+|||+|||.. +++++|.++|.+||.|..+.+..+.. .|||||+|.+
T Consensus 196 ~~~~~~~~------------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~ 263 (292)
T 2ghp_A 196 PLEKSKRT------------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFEN 263 (292)
T ss_dssp CC---------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESS
T ss_pred CCcccccc------------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCC
Confidence 54432211 122345689999999999 99999999999999999999987654 5799999999
Q ss_pred HHHHHHHHHHhcCcccccceeeeEEEeecccc
Q 024135 156 YDDMKHAIKKLDDSEFRNAFSRAYVRVREYDH 187 (272)
Q Consensus 156 ~~~a~~a~~~l~~~~~~g~~~~~~~~~~~~~~ 187 (272)
.++|..|+ .|||..++| ..|.|....+
T Consensus 264 ~~~A~~A~-~l~g~~~~g----~~i~V~~a~~ 290 (292)
T 2ghp_A 264 KDSAERAL-QMNRSLLGN----REISVSLADK 290 (292)
T ss_dssp HHHHHHHG-GGTTEEETT----EEEEEEECCC
T ss_pred HHHHHHHH-HhcCCEECC----cEEEEEEecC
Confidence 99999999 999999999 5566555443
No 17
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.97 E-value=1.3e-29 Score=205.76 Aligned_cols=141 Identities=27% Similarity=0.405 Sum_probs=128.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEccCC
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~ 83 (272)
.++++|||+|||+++|+++|.++|+.||.|..|.+. .++|||||+|.+.++|..|+..|||..|.|+.|.|.++..
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~---~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~- 95 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFIN---RDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH- 95 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC-
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEe---CCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc-
Confidence 356799999999999999999999999999999996 3479999999999999999999999999999999999853
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC---CCeEEEEeCCHHHHH
Q 024135 84 RGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMK 160 (272)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~---~~~~fv~f~~~~~a~ 160 (272)
..+|||+|||..+++++|.++|..||.|..+.+..+.. .|||||+|.+.++|.
T Consensus 96 ------------------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~ 151 (261)
T 3sde_A 96 ------------------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPAR 151 (261)
T ss_dssp ------------------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHH
T ss_pred ------------------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHH
Confidence 35899999999999999999999999999999998854 359999999999999
Q ss_pred HHHHHhcCcccc
Q 024135 161 HAIKKLDDSEFR 172 (272)
Q Consensus 161 ~a~~~l~~~~~~ 172 (272)
.|+..|++..+.
T Consensus 152 ~A~~~l~~~~~~ 163 (261)
T 3sde_A 152 KALERCGDGAFL 163 (261)
T ss_dssp HHHHHHHHSCEE
T ss_pred HHHHHhcCCeEE
Confidence 999999554443
No 18
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=4.2e-29 Score=205.47 Aligned_cols=150 Identities=24% Similarity=0.324 Sum_probs=135.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEccCC
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~ 83 (272)
.++++|||+|||+++|+++|.++|+.|| |..+.+ +.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~-- 93 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV---DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP-- 93 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE---ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC--
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE---ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC--
Confidence 3679999999999999999999999999 999988 4678999999999999999999999999999999999863
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CCeEEEEeCCHHHH
Q 024135 84 RGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDM 159 (272)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~----~~~~fv~f~~~~~a 159 (272)
...+|||+|||..+++++|.++|..||.|..+.+..+.. .|||||+|.+.++|
T Consensus 94 -----------------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a 150 (284)
T 3smz_A 94 -----------------------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSA 150 (284)
T ss_dssp -----------------------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred -----------------------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHH
Confidence 236999999999999999999999999999999988764 35999999999999
Q ss_pred HHHHHHhcCcccccceeeeEEEeeccc
Q 024135 160 KHAIKKLDDSEFRNAFSRAYVRVREYD 186 (272)
Q Consensus 160 ~~a~~~l~~~~~~g~~~~~~~~~~~~~ 186 (272)
..|+..|++..++| ..+.+....
T Consensus 151 ~~A~~~l~~~~~~g----~~i~v~~a~ 173 (284)
T 3smz_A 151 ARAKSDLLGKPLGP----RTLYVHWTD 173 (284)
T ss_dssp HHHHHHHTTCEETT----EECEEEECC
T ss_pred HHHHHHhCCCEeCC----cEEEEEECC
Confidence 99999999999999 445555443
No 19
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=3e-29 Score=206.35 Aligned_cols=164 Identities=19% Similarity=0.252 Sum_probs=142.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEc
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (272)
.+.++|||+|||+++|+++|.++|+.||.|..+.+.. ++.++|||||+|.+.++|..|+..|||..|.|+.|.|.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 4678999999999999999999999999999999854 5677899999999999999999999999999999999998
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCccceEEEcCCCCCC-CHHHHHHHHHhcCCeeEEEEEecCCC---CeEEEEeCCH
Q 024135 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSA-SWQDLKDHMRRAGDVCFSQVFRDGSG---TTGIVDYTNY 156 (272)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~-~~~~l~~~f~~~G~i~~~~~~~~~~~---~~~fv~f~~~ 156 (272)
...... .......+|||+|||..+ ++++|.++|+.||.|..+.+..+..+ |+|||+|.+.
T Consensus 173 ~~~~~~----------------~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~ 236 (284)
T 3smz_A 173 DAGQLT----------------PALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETA 236 (284)
T ss_dssp CGGGCC----------------TTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSH
T ss_pred CCCCCC----------------cccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCH
Confidence 754321 122356799999999995 99999999999999999999987543 5999999999
Q ss_pred HHHHHHHHHhcCcccccceeeeEEEeecccc
Q 024135 157 DDMKHAIKKLDDSEFRNAFSRAYVRVREYDH 187 (272)
Q Consensus 157 ~~a~~a~~~l~~~~~~g~~~~~~~~~~~~~~ 187 (272)
++|..|+..|||..++| ..+.|....+
T Consensus 237 ~~A~~A~~~l~g~~~~g----~~l~v~~a~~ 263 (284)
T 3smz_A 237 EMAEEAQQQADGLSLGG----SHLRVSFCAP 263 (284)
T ss_dssp HHHHHHHHHHTTCEETT----EECEEEECCS
T ss_pred HHHHHHHHHhCCCccCC----eEEEEEEecC
Confidence 99999999999999999 4555555443
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=2.5e-29 Score=207.61 Aligned_cols=152 Identities=20% Similarity=0.269 Sum_probs=132.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecC-CCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEccC
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP-PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~-~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~ 82 (272)
.++++|||+|||+++|+++|.++|+.||+|..|.|..+ ..++|||||+|.+.++|.+|+. |||..|.|+.|.|.++.
T Consensus 39 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~~~~- 116 (292)
T 2ghp_A 39 RELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVSHLT- 116 (292)
T ss_dssp ---CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEEECC-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEEECC-
Confidence 57899999999999999999999999999999999653 3357999999999999999996 99999999999999863
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHHhcC-CeeEEEEEecC---CCCeEEEEeCCHHH
Q 024135 83 GRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDG---SGTTGIVDYTNYDD 158 (272)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G-~i~~~~~~~~~---~~~~~fv~f~~~~~ 158 (272)
..+|||+|||..+++++|.++|..|| .|..+.+..+. ..|||||+|.+.++
T Consensus 117 -------------------------~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~ 171 (292)
T 2ghp_A 117 -------------------------ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKED 171 (292)
T ss_dssp -------------------------SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHH
T ss_pred -------------------------CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHH
Confidence 47999999999999999999999999 99999998765 56799999999999
Q ss_pred HHHHHHHhcCcccccceeeeEEEeeccc
Q 024135 159 MKHAIKKLDDSEFRNAFSRAYVRVREYD 186 (272)
Q Consensus 159 a~~a~~~l~~~~~~g~~~~~~~~~~~~~ 186 (272)
|..|+..|++..+.| ..+.+....
T Consensus 172 a~~A~~~l~g~~~~g----~~l~v~~a~ 195 (292)
T 2ghp_A 172 ARYCVEKLNGLKIEG----YTLVTKVSN 195 (292)
T ss_dssp HHHHHHHHTTCEETT----EECEEEECC
T ss_pred HHHHHHHhCCCEeCC----cEEEEEECC
Confidence 999999999999999 445555443
No 21
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.91 E-value=1.6e-24 Score=153.59 Aligned_cols=108 Identities=21% Similarity=0.353 Sum_probs=72.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecC-CCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEccCC
Q 024135 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP-PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (272)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~-~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~ 83 (272)
.+.+|||+|||+++|+++|+++|+.||.|.+|.|..+ +.++|||||+|.+.++|++|+..|||..|.|+.|.|.++...
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 4678999999999999999999999999999999653 456899999999999999999999999999999999998754
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccceEEEcCCCCCCCHH
Q 024135 84 RGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQ 123 (272)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~ 123 (272)
..... ..........+|||+|||+.+|++
T Consensus 84 ~~~~~-----------~~~~~~~~~~~lyv~Nl~~~~T~~ 112 (115)
T 4f25_A 84 KEREA-----------ELGARAKEFTNVYIKNFGPGSTRA 112 (115)
T ss_dssp CC--------------------------------------
T ss_pred ccccc-----------ccccccCCCCceEeCCCCCCcccc
Confidence 32111 011122334679999999999876
No 22
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.89 E-value=3.4e-22 Score=172.41 Aligned_cols=82 Identities=35% Similarity=0.623 Sum_probs=75.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEc
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (272)
.+.++|||+|||+.||+++|.++|++||.|+.|.|+. ++.++|||||+|.+.++|.+||..|||..|.|+.|.|.|+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 4668999999999999999999999999999999964 5778999999999999999999999999999999999999
Q ss_pred cCCCC
Q 024135 81 HGGRG 85 (272)
Q Consensus 81 ~~~~~ 85 (272)
.....
T Consensus 180 ~~~~~ 184 (437)
T 3pgw_S 180 RGRTV 184 (437)
T ss_pred CCCCC
Confidence 86543
No 23
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.88 E-value=2.2e-22 Score=173.61 Aligned_cols=162 Identities=15% Similarity=0.173 Sum_probs=101.4
Q ss_pred CCCCCCCHHHHHHHhhccCCeeEEEe----ecCC-CCCceE-----EEEecChHHHHHHHHhcCCcccCCceEEEEEccC
Q 024135 13 NLPGDIREREVEDLFYKYGPIAHIDL----KIPP-RPPGYA-----FVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (272)
Q Consensus 13 nL~~~~t~~~l~~~F~~~G~v~~v~~----~~~~-~~~g~a-----fV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~ 82 (272)
.||++ |.+||..+|+|..|.. +... ...+|+ |++|....++..++..++.....+..........
T Consensus 4 ~lPp~-----L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~ 78 (437)
T 3pgw_S 4 FLPPN-----LLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERR 78 (437)
T ss_pred cCCcc-----HHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHH
Confidence 45654 7899999999988732 2111 233344 7788777666555544333322211000000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecC----CCCeEEEEeCCHHH
Q 024135 83 GRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDD 158 (272)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~----~~~~~fv~f~~~~~ 158 (272)
.. ........+...........+..+|||+|||..+++++|.++|.+||.|..|.|+.+. ..|||||+|.+.++
T Consensus 79 ~~--~~~~~~~~~~p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~ 156 (437)
T 3pgw_S 79 QQ--EVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERD 156 (437)
T ss_pred HH--HHHHhhhhcCCcccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHH
Confidence 00 0000000000000111223456799999999999999999999999999999998774 35699999999999
Q ss_pred HHHHHHHhcCcccccceeeeEEE
Q 024135 159 MKHAIKKLDDSEFRNAFSRAYVR 181 (272)
Q Consensus 159 a~~a~~~l~~~~~~g~~~~~~~~ 181 (272)
|..||..|||..|.|..+.+.+.
T Consensus 157 A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 157 MHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred HHHHHHHcCCCEECCEEEEEEEe
Confidence 99999999999999965554443
No 24
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.87 E-value=1.6e-22 Score=143.45 Aligned_cols=106 Identities=29% Similarity=0.454 Sum_probs=95.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEcc
Q 024135 2 SSRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (272)
Q Consensus 2 ~~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (272)
...++++|||+|||+++++++|.++|+.||.|..|.+..++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 34678999999999999999999999999999999998888889999999999999999999999999999999999986
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHHHHHHhcCC
Q 024135 82 GGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGD 134 (272)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~ 134 (272)
..... .+++...++++|.++|++||.
T Consensus 84 ~~~~~---------------------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 84 ANRAF---------------------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp HHHHT---------------------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred CChhh---------------------------hhhhHhHhHHHHHHHHHHhCC
Confidence 43211 456677789999999999984
No 25
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.87 E-value=4.2e-22 Score=136.99 Aligned_cols=78 Identities=28% Similarity=0.488 Sum_probs=72.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEcc
Q 024135 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (272)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (272)
..++|||+|||+++|+++|+++|++||+|..+.|.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|++
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 357899999999999999999999999999999954 46788999999999999999999999999999999999986
Q ss_pred C
Q 024135 82 G 82 (272)
Q Consensus 82 ~ 82 (272)
+
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 4
No 26
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.87 E-value=6.7e-22 Score=136.91 Aligned_cols=100 Identities=43% Similarity=0.634 Sum_probs=83.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEccCCCCC
Q 024135 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRGR 86 (272)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~~~~ 86 (272)
++|||+|||+++|+++|+++|++||+|..+.+..+ ++|||||+|.+.++|++|+..|||..|.|+.|.|.++......
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 78 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN--PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRR 78 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS--SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCc
Confidence 58999999999999999999999999999999766 7899999999999999999999999999999999999865532
Q ss_pred CCCCCCCCCCCCCCCCCCCCccceEEEcCCC
Q 024135 87 SSSDRHSSHSSGRGRGVSRRSEYRVLVTGLP 117 (272)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~ 117 (272)
...... ........+|||+||+
T Consensus 79 ~~~~~~---------~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 79 SRFDRP---------PARRKLLEVLFNGPLE 100 (101)
T ss_dssp SCCCSC---------CCSCCCCSCCCSCCCC
T ss_pred ccCCCC---------CccccCCCceecCCCC
Confidence 221111 1222345689999986
No 27
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.86 E-value=4.8e-21 Score=125.48 Aligned_cols=74 Identities=18% Similarity=0.252 Sum_probs=70.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEc
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (272)
-.+.-|||+||++.+|+++|+++|.+||+|.++++.. ++|||||+|.++++|.+|+..|||..|.|+.|.|.++
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~---~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL---NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET---TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC---CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 4577899999999999999999999999999999974 6999999999999999999999999999999999987
No 28
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=7.2e-21 Score=133.54 Aligned_cols=84 Identities=60% Similarity=1.058 Sum_probs=78.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEcc
Q 024135 2 SSRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (272)
Q Consensus 2 ~~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (272)
...++++|||+|||+++|+++|+++|+.||.|..|.|..++.+++||||+|.+.++|++|+..||+..|.|+.|.|.|++
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 97 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR 97 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcc
Confidence 34678999999999999999999999999999999998888889999999999999999999999999999999999998
Q ss_pred CCCC
Q 024135 82 GGRG 85 (272)
Q Consensus 82 ~~~~ 85 (272)
....
T Consensus 98 ~~~~ 101 (109)
T 1x4a_A 98 SGRG 101 (109)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 6543
No 29
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=3.6e-21 Score=132.17 Aligned_cols=81 Identities=20% Similarity=0.271 Sum_probs=73.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcC--CcccCCceEEEEE
Q 024135 2 SSRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRD--GYDFDGHRLRVEL 79 (272)
Q Consensus 2 ~~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~--g~~~~g~~i~v~~ 79 (272)
+..++++|||+|||+++|+++|+++|++||.|.+|.|..+ +|||||+|.+.++|.+|+..|+ +..|.|+.|.|.|
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~---kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 88 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG---KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 88 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC---CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 3568899999999999999999999999999999999854 7999999999999999999886 4789999999999
Q ss_pred ccCCCC
Q 024135 80 AHGGRG 85 (272)
Q Consensus 80 ~~~~~~ 85 (272)
++....
T Consensus 89 A~~~~~ 94 (105)
T 1sjq_A 89 SNHKEL 94 (105)
T ss_dssp CSSSSC
T ss_pred cCCCCC
Confidence 976543
No 30
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.85 E-value=1.8e-21 Score=131.79 Aligned_cols=79 Identities=19% Similarity=0.344 Sum_probs=71.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccC-CeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcC-CcccCCceEEEEEc
Q 024135 6 SRTLYVGNLPGDIREREVEDLFYKYG-PIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRD-GYDFDGHRLRVELA 80 (272)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G-~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~-g~~~~g~~i~v~~~ 80 (272)
+++|||+|||+++|+++|+++|+.|| +|.+|.|.. ++.++|||||+|.+.++|++|+..++ +..|.|+.|.|.|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 68999999999999999999999999 899999854 47889999999999999999998774 56799999999999
Q ss_pred cCCC
Q 024135 81 HGGR 84 (272)
Q Consensus 81 ~~~~ 84 (272)
.+..
T Consensus 81 ~~~~ 84 (91)
T 2lxi_A 81 DPKP 84 (91)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 7544
No 31
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.85 E-value=7.2e-21 Score=141.33 Aligned_cols=136 Identities=18% Similarity=0.178 Sum_probs=107.2
Q ss_pred CCCCceEEEEecChHHHHHHHHhc-CCcccCCceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCccceEEEcCCCCCC
Q 024135 42 PRPPGYAFVEFEEARDAEDAIRGR-DGYDFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSA 120 (272)
Q Consensus 42 ~~~~g~afV~f~~~~~a~~a~~~l-~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~ 120 (272)
...+|+++|+|.+.++|++|+..| ||..+.| .|.+.++........... ............+..+|||+|||..+
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~V~nl~~~~ 85 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSH---HHHHHMHRDSCPLDCKVYVGNLGNNG 85 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSS---SCCCCSCSSSSTTSCEEEEESCCSCC
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccc---cccccccccCCCCCCEEEEeCCCCCC
Confidence 356899999999999999999999 9999999 999998764221110000 00011112334456899999999999
Q ss_pred CHHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCcccccceeeeEEEeeccc
Q 024135 121 SWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYD 186 (272)
Q Consensus 121 ~~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~~~~~ 186 (272)
++++|.++|.+||.|..+.+..+ ..|||||+|.+.++|..|+..|||..+.|+ .|.|....
T Consensus 86 t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----~l~v~~a~ 146 (150)
T 2i2y_A 86 NKTELERAFGYYGPLRSVWVARN-PPGFAFVEFEDPRDAADAVRELDGRTLCGC----RVRVELSN 146 (150)
T ss_dssp SCHHHHHHHHHHSCEEEEEECSS-SCSEEEEEESSHHHHHHHHHHHSSSCSSSS----CCEEEECC
T ss_pred CHHHHHHHHHhhCCEEEEEEeeC-CCcEEEEEECCHHHHHHHHHHcCCCEECCe----EEEEEEcC
Confidence 99999999999999999999887 567999999999999999999999999994 44444443
No 32
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.85 E-value=1.8e-20 Score=132.72 Aligned_cols=86 Identities=27% Similarity=0.509 Sum_probs=78.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec--CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEE
Q 024135 1 MSSRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (272)
Q Consensus 1 ~~~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~ 78 (272)
|...++++|||+|||+++++++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.
T Consensus 2 ~e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~ 81 (116)
T 2fy1_A 2 VEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81 (116)
T ss_dssp CTTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3456789999999999999999999999999999999965 57788999999999999999999999999999999999
Q ss_pred EccCCCCC
Q 024135 79 LAHGGRGR 86 (272)
Q Consensus 79 ~~~~~~~~ 86 (272)
+++.....
T Consensus 82 ~a~~~~~~ 89 (116)
T 2fy1_A 82 QAKKPSFQ 89 (116)
T ss_dssp ECCCSSCS
T ss_pred ECCCCCCC
Confidence 99865543
No 33
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.85 E-value=9.5e-21 Score=128.73 Aligned_cols=78 Identities=22% Similarity=0.306 Sum_probs=71.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcc--cCCceEEEEEc
Q 024135 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYD--FDGHRLRVELA 80 (272)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~--~~g~~i~v~~~ 80 (272)
..|+++|||+|||.++|+++|.++|++||.|.++.+.. .+|||||+|.+.++|.+|+..||+.. |.|++|.|+|+
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~---~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S 94 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP---KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYS 94 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET---TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc---CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEec
Confidence 36899999999999999999999999999999999973 57999999999999999999999875 78999999999
Q ss_pred cCC
Q 024135 81 HGG 83 (272)
Q Consensus 81 ~~~ 83 (272)
+..
T Consensus 95 ~~k 97 (100)
T 3r27_A 95 TSQ 97 (100)
T ss_dssp SCS
T ss_pred ccc
Confidence 753
No 34
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.85 E-value=5.3e-21 Score=133.97 Aligned_cols=79 Identities=19% Similarity=0.342 Sum_probs=74.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEc
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (272)
.+.++|||+|||+++++++|+++|++||.|.+|.|.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 5789999999999999999999999999999999964 4678999999999999999999999999999999999998
Q ss_pred cC
Q 024135 81 HG 82 (272)
Q Consensus 81 ~~ 82 (272)
..
T Consensus 84 ~~ 85 (110)
T 3s8s_A 84 IK 85 (110)
T ss_dssp ST
T ss_pred CC
Confidence 64
No 35
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.84 E-value=3.9e-20 Score=138.62 Aligned_cols=143 Identities=16% Similarity=0.088 Sum_probs=102.2
Q ss_pred EEeecC-CCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCccceEEEc
Q 024135 36 IDLKIP-PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVT 114 (272)
Q Consensus 36 v~~~~~-~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 114 (272)
++|..+ ..++|||||+|.+.++|++|+..+++....+..+.+........... ...............+|||+
T Consensus 3 ~kl~ln~~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~v~ 76 (158)
T 2kn4_A 3 YKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTE------GSHHHHHHMDVEGMTSLKVD 76 (158)
T ss_dssp EEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEEC------CCCCSSCCCCCCBCCEEEEE
T ss_pred EEEEecCccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccc------cccccccccCCCCCCEEEEe
Confidence 444333 35789999999999999999988876444333333322111000000 00000111233456899999
Q ss_pred CCCCCCCHHHHHHHHHhcCCeeEEEEEecC----CCCeEEEEeCCHHHHHHHHHHhcCcccccceeeeEEEeeccccC
Q 024135 115 GLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYDHR 188 (272)
Q Consensus 115 nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~~~~~~~ 188 (272)
|||..+++++|+++|.+||.|..+.+..+. ..|||||+|.+.++|..|+..|||..+.| ..|.|....+.
T Consensus 77 nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~a~~~ 150 (158)
T 2kn4_A 77 NLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDG----RELRVQMARYG 150 (158)
T ss_dssp SCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSS----SEEEEEEECCS
T ss_pred CCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC----eEEEEEECCCC
Confidence 999999999999999999999999998774 45699999999999999999999999999 55666655443
No 36
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=2.9e-20 Score=128.16 Aligned_cols=83 Identities=34% Similarity=0.509 Sum_probs=76.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEE
Q 024135 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (272)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~ 79 (272)
..++++|||+|||+++++++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 46789999999999999999999999999999999954 567889999999999999999999999999999999999
Q ss_pred ccCCCC
Q 024135 80 AHGGRG 85 (272)
Q Consensus 80 ~~~~~~ 85 (272)
+.....
T Consensus 85 a~~~~~ 90 (99)
T 1whw_A 85 STIKKE 90 (99)
T ss_dssp CCCCST
T ss_pred cCCCcc
Confidence 987654
No 37
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=3.7e-20 Score=126.59 Aligned_cols=82 Identities=29% Similarity=0.506 Sum_probs=76.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecC---CCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEc
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~---~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (272)
.++++|||+|||+++++++|+++|+.||.|..|.+..+ +.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 57899999999999999999999999999999999653 678999999999999999999999999999999999999
Q ss_pred cCCCC
Q 024135 81 HGGRG 85 (272)
Q Consensus 81 ~~~~~ 85 (272)
.....
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 76543
No 38
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.84 E-value=1.5e-20 Score=134.69 Aligned_cols=81 Identities=19% Similarity=0.394 Sum_probs=75.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEE
Q 024135 3 SRASRTLYVGNLPGDIREREVE----DLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (272)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~----~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~ 78 (272)
..++++|||+|||+.+++++|+ ++|++||.|.+|.+..++.++|||||+|.+.++|..|+..|||..|.|+.|.|.
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~ 105 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVIT 105 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEE
Confidence 3578999999999999999876 799999999999998888899999999999999999999999999999999999
Q ss_pred EccCC
Q 024135 79 LAHGG 83 (272)
Q Consensus 79 ~~~~~ 83 (272)
|++..
T Consensus 106 ~a~~~ 110 (127)
T 2a3j_A 106 FSETP 110 (127)
T ss_dssp ECCCC
T ss_pred EccCc
Confidence 99754
No 39
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=4.6e-20 Score=128.06 Aligned_cols=83 Identities=34% Similarity=0.506 Sum_probs=75.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecC-CCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEcc
Q 024135 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP-PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (272)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~-~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (272)
..+.++|||+|||+++++++|+++|+.||.|..|.|..+ ..++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECC
Confidence 467899999999999999999999999999999999664 3468999999999999999999999999999999999998
Q ss_pred CCCC
Q 024135 82 GGRG 85 (272)
Q Consensus 82 ~~~~ 85 (272)
....
T Consensus 92 ~~~~ 95 (103)
T 2cqi_A 92 TPSS 95 (103)
T ss_dssp CTTC
T ss_pred CCcc
Confidence 7543
No 40
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.84 E-value=1.7e-20 Score=128.46 Aligned_cols=80 Identities=29% Similarity=0.615 Sum_probs=74.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecC---CCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEcc
Q 024135 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (272)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~---~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (272)
|+++|||+|||.++++++|+++|+.||.|..+.+..+ +.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 6899999999999999999999999999999999654 6779999999999999999999999999999999999997
Q ss_pred CCC
Q 024135 82 GGR 84 (272)
Q Consensus 82 ~~~ 84 (272)
...
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 643
No 41
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=2.1e-20 Score=129.79 Aligned_cols=82 Identities=37% Similarity=0.577 Sum_probs=75.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecC---CCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEc
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~---~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (272)
.++++|||+|||+++++++|+++|+.||.|..|.|..+ +.++|||||+|.+.++|++|+..|||..|.|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 56899999999999999999999999999999999653 678999999999999999999999999999999999999
Q ss_pred cCCCC
Q 024135 81 HGGRG 85 (272)
Q Consensus 81 ~~~~~ 85 (272)
.....
T Consensus 91 ~~~~~ 95 (103)
T 2dnm_A 91 RYGRR 95 (103)
T ss_dssp SSCCS
T ss_pred CcCCC
Confidence 86543
No 42
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.1e-20 Score=129.62 Aligned_cols=82 Identities=34% Similarity=0.580 Sum_probs=76.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecC---CCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEc
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~---~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (272)
.+.++|||+|||+++++++|+++|+.||.|..|.|..+ +.++|||||+|.+.++|++|+..|||..|.|+.|.|.++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 57899999999999999999999999999999999553 678999999999999999999999999999999999999
Q ss_pred cCCCC
Q 024135 81 HGGRG 85 (272)
Q Consensus 81 ~~~~~ 85 (272)
.....
T Consensus 90 ~~~~~ 94 (102)
T 2cqb_A 90 KPMRI 94 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 86554
No 43
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.84 E-value=5.8e-21 Score=129.82 Aligned_cols=79 Identities=20% Similarity=0.345 Sum_probs=70.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCC--eeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCc----ccCCce
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGP--IAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGY----DFDGHR 74 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~--v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~----~~~g~~ 74 (272)
..=+||||+|||+++|+++|+++|++||. |.+|.+.. ++.++|||||+|.+.++|.+|+..|||. .|.|+.
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 34579999999999999999999999995 67888854 4788999999999999999999999997 489999
Q ss_pred EEEEEccC
Q 024135 75 LRVELAHG 82 (272)
Q Consensus 75 i~v~~~~~ 82 (272)
|.|.||+.
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999974
No 44
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=1.7e-20 Score=129.05 Aligned_cols=83 Identities=27% Similarity=0.465 Sum_probs=75.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecC------CCCCceEEEEecChHHHHHHHHhcCCcccCCceEE
Q 024135 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP------PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLR 76 (272)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~------~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~ 76 (272)
+.++++|||+|||+++++++|+++|+.||+|..|.|..+ +.++|||||+|.+.++|++|+..|||..|.|+.|.
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (98)
T 2cpf_A 2 SSGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE 81 (98)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 468899999999999999999999999999999999642 26789999999999999999999999999999999
Q ss_pred EEEccCCCC
Q 024135 77 VELAHGGRG 85 (272)
Q Consensus 77 v~~~~~~~~ 85 (272)
|.++.....
T Consensus 82 V~~a~~~~~ 90 (98)
T 2cpf_A 82 VRISERATK 90 (98)
T ss_dssp EECSSCSSC
T ss_pred EEEccCCCC
Confidence 999976543
No 45
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.83 E-value=1.8e-20 Score=125.43 Aligned_cols=79 Identities=34% Similarity=0.631 Sum_probs=73.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEE
Q 024135 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (272)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~ 79 (272)
..++++|||+|||+++++++|+++|++||.|..+.+.. ++.++|||||+|.+.++|..|+..|||..|.|+.|.|.|
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 46889999999999999999999999999999999843 466789999999999999999999999999999999999
Q ss_pred cc
Q 024135 80 AH 81 (272)
Q Consensus 80 ~~ 81 (272)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 46
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=4.7e-20 Score=126.71 Aligned_cols=80 Identities=20% Similarity=0.264 Sum_probs=72.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhc--CCcccCCceEEEEEc
Q 024135 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGR--DGYDFDGHRLRVELA 80 (272)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l--~g~~~~g~~i~v~~~ 80 (272)
..++++|||+|||+++++++|+++|++||.|..|.|..+ +|||||+|.+.++|.+|+..| ++..|.|+.|.|.|+
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 88 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG---KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYS 88 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC---CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEc
Confidence 468899999999999999999999999999999998753 899999999999999999976 467899999999999
Q ss_pred cCCCC
Q 024135 81 HGGRG 85 (272)
Q Consensus 81 ~~~~~ 85 (272)
+....
T Consensus 89 ~~~~~ 93 (101)
T 2cq1_A 89 NHKEL 93 (101)
T ss_dssp SCSSC
T ss_pred CcccC
Confidence 86543
No 47
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.3e-20 Score=127.04 Aligned_cols=81 Identities=21% Similarity=0.333 Sum_probs=74.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHH----HHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEE
Q 024135 4 RASRTLYVGNLPGDIREREVE----DLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~----~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~ 79 (272)
.+.++|||+|||+++++++|+ ++|++||+|..|.|..+...+|||||+|.+.++|++|+..|||..|.|+.|.|.+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~ 86 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSL 86 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 457899999999999999999 9999999999999976544489999999999999999999999999999999999
Q ss_pred ccCCC
Q 024135 80 AHGGR 84 (272)
Q Consensus 80 ~~~~~ 84 (272)
+++..
T Consensus 87 a~~~~ 91 (96)
T 2dgx_A 87 ATGAS 91 (96)
T ss_dssp CCCSS
T ss_pred cCCCC
Confidence 97543
No 48
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=6.4e-20 Score=126.39 Aligned_cols=82 Identities=24% Similarity=0.531 Sum_probs=75.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEE
Q 024135 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (272)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~ 79 (272)
..++++|||+|||+++++++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|++|+. ||+..|.|+.|.|.+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 46789999999999999999999999999999999965 36789999999999999999999 999999999999999
Q ss_pred ccCCCC
Q 024135 80 AHGGRG 85 (272)
Q Consensus 80 ~~~~~~ 85 (272)
+.....
T Consensus 86 a~~~~~ 91 (99)
T 2dgs_A 86 AEPRDS 91 (99)
T ss_dssp CCCCCC
T ss_pred CCCCcc
Confidence 986543
No 49
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.6e-20 Score=131.09 Aligned_cols=81 Identities=19% Similarity=0.272 Sum_probs=73.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCC--cccCCceEEEEE
Q 024135 2 SSRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDG--YDFDGHRLRVEL 79 (272)
Q Consensus 2 ~~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g--~~~~g~~i~v~~ 79 (272)
...++++|||+|||+++|+++|+++|++||.|.+|.|..+ +|||||+|.+.++|.+|+..|++ ..|.|+.|.|.|
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~---kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~ 103 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG---KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 103 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG---GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEE
Confidence 3468899999999999999999999999999999999754 79999999999999999998874 689999999999
Q ss_pred ccCCCC
Q 024135 80 AHGGRG 85 (272)
Q Consensus 80 ~~~~~~ 85 (272)
++....
T Consensus 104 a~~k~~ 109 (119)
T 2ad9_A 104 SNHKEL 109 (119)
T ss_dssp CSSSSC
T ss_pred ccCCCC
Confidence 976543
No 50
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=4.5e-20 Score=127.88 Aligned_cols=82 Identities=34% Similarity=0.596 Sum_probs=75.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEc
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (272)
.++++|||+|||+++++++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 5789999999999999999999999999999999965 4668899999999999999999999999999999999999
Q ss_pred cCCCC
Q 024135 81 HGGRG 85 (272)
Q Consensus 81 ~~~~~ 85 (272)
.....
T Consensus 90 ~~~~~ 94 (102)
T 1x5s_A 90 GKSSD 94 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 86553
No 51
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.83 E-value=9.5e-21 Score=130.09 Aligned_cols=84 Identities=29% Similarity=0.538 Sum_probs=76.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHH----HHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEE
Q 024135 1 MSSRASRTLYVGNLPGDIREREVE----DLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLR 76 (272)
Q Consensus 1 ~~~~~~~~l~v~nL~~~~t~~~l~----~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~ 76 (272)
|...++++|||+|||+++++++|+ ++|++||.|..|.+..++.++|||||+|.+.++|..|+..|||..|.|+.|.
T Consensus 3 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 3 PETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp ---CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 456789999999999999999999 9999999999999976677789999999999999999999999999999999
Q ss_pred EEEccCCC
Q 024135 77 VELAHGGR 84 (272)
Q Consensus 77 v~~~~~~~ 84 (272)
|.|+....
T Consensus 83 v~~a~~~~ 90 (97)
T 1nu4_A 83 IQYAKTDS 90 (97)
T ss_dssp EEECSSCC
T ss_pred EEEccCCC
Confidence 99997643
No 52
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.6e-20 Score=126.95 Aligned_cols=82 Identities=24% Similarity=0.422 Sum_probs=75.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEE-Eeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEE
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHI-DLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v-~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~ 79 (272)
.++++|||+|||+++++++|+++|+.||.|..+ .|.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 578999999999999999999999999999999 8854 467899999999999999999999999999999999999
Q ss_pred ccCCCC
Q 024135 80 AHGGRG 85 (272)
Q Consensus 80 ~~~~~~ 85 (272)
+.....
T Consensus 83 a~~~~~ 88 (96)
T 1x5t_A 83 AFKKDS 88 (96)
T ss_dssp SCCCCC
T ss_pred ecccCC
Confidence 976543
No 53
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=4e-20 Score=126.18 Aligned_cols=78 Identities=23% Similarity=0.462 Sum_probs=73.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecC---CCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEc
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~---~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (272)
.++++|||+|||+++++++|+++|+.||+|..+.+..+ +.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 56789999999999999999999999999999999654 678899999999999999999999999999999999997
Q ss_pred c
Q 024135 81 H 81 (272)
Q Consensus 81 ~ 81 (272)
+
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 4
No 54
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=1.7e-20 Score=128.76 Aligned_cols=79 Identities=18% Similarity=0.176 Sum_probs=71.5
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCc--ccCCceEEEEE
Q 024135 3 SRASRTLYVGNLPG-DIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY--DFDGHRLRVEL 79 (272)
Q Consensus 3 ~~~~~~l~v~nL~~-~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~--~~~g~~i~v~~ 79 (272)
..++++|||+|||+ ++|+++|+++|++||.|.+|.|..+ +|||||+|.+.++|.+|+..||+. .|.|+.|.|.+
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 88 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK---INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHL 88 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS---SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC---CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEE
Confidence 35889999999999 9999999999999999999999743 689999999999999999998864 59999999999
Q ss_pred ccCCC
Q 024135 80 AHGGR 84 (272)
Q Consensus 80 ~~~~~ 84 (272)
++...
T Consensus 89 a~~~~ 93 (102)
T 1x4d_A 89 SQKYK 93 (102)
T ss_dssp ECCCT
T ss_pred CCCCC
Confidence 98544
No 55
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.83 E-value=3.1e-20 Score=126.24 Aligned_cols=84 Identities=27% Similarity=0.461 Sum_probs=77.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec-CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEc
Q 024135 2 SSRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI-PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (272)
Q Consensus 2 ~~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~-~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (272)
...+.++|||+|||+++++++|+++|+.||.|..+.+.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 346889999999999999999999999999999999965 5667899999999999999999999999999999999999
Q ss_pred cCCCC
Q 024135 81 HGGRG 85 (272)
Q Consensus 81 ~~~~~ 85 (272)
.....
T Consensus 84 ~~~~~ 88 (92)
T 2dgv_A 84 RNASG 88 (92)
T ss_dssp SCCSS
T ss_pred CCCCC
Confidence 86543
No 56
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=4.2e-20 Score=128.28 Aligned_cols=83 Identities=25% Similarity=0.396 Sum_probs=76.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec-CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEcc
Q 024135 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI-PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (272)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~-~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (272)
..+.++|||+|||+++|+++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 91 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence 45789999999999999999999999999999999965 46678999999999999999999999999999999999998
Q ss_pred CCCC
Q 024135 82 GGRG 85 (272)
Q Consensus 82 ~~~~ 85 (272)
....
T Consensus 92 ~~~~ 95 (103)
T 2d9p_A 92 RKEE 95 (103)
T ss_dssp SCCC
T ss_pred cccc
Confidence 6543
No 57
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=7.2e-20 Score=127.56 Aligned_cols=82 Identities=30% Similarity=0.474 Sum_probs=76.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEc
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (272)
.++++|||+|||+++++++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 5789999999999999999999999999999999965 5678999999999999999999999999999999999999
Q ss_pred cCCCC
Q 024135 81 HGGRG 85 (272)
Q Consensus 81 ~~~~~ 85 (272)
.....
T Consensus 93 ~~~~~ 97 (105)
T 1x5u_A 93 SAHNK 97 (105)
T ss_dssp TTTSC
T ss_pred CCCCc
Confidence 76543
No 58
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.83 E-value=3.5e-20 Score=123.43 Aligned_cols=78 Identities=24% Similarity=0.454 Sum_probs=72.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEccC
Q 024135 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (272)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~ 82 (272)
+.+|||+|||+++++++|+++|+.||+|..+.+.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++..
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 47899999999999999999999999999999964 467789999999999999999999999999999999999975
Q ss_pred C
Q 024135 83 G 83 (272)
Q Consensus 83 ~ 83 (272)
.
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 3
No 59
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.83 E-value=1e-19 Score=128.93 Aligned_cols=83 Identities=25% Similarity=0.440 Sum_probs=76.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEc
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (272)
.+.++|||+|||+.+++++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 92 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 5788999999999999999999999999999999964 4677899999999999999999999999999999999999
Q ss_pred cCCCCC
Q 024135 81 HGGRGR 86 (272)
Q Consensus 81 ~~~~~~ 86 (272)
......
T Consensus 93 ~~~~~~ 98 (115)
T 2dgo_A 93 TRKPPA 98 (115)
T ss_dssp SCCCCC
T ss_pred cCCCCC
Confidence 866544
No 60
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.83 E-value=1.1e-19 Score=126.13 Aligned_cols=79 Identities=24% Similarity=0.496 Sum_probs=73.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEccCC
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~ 83 (272)
.++++|||+|||+++|+++|+++|+.||.|..|.+. ++||||+|.+.++|++|+..|||..|.|+.|.|.|+...
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-----KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPP 83 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-----SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-----CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCC
Confidence 467999999999999999999999999999999987 579999999999999999999999999999999999876
Q ss_pred CCCC
Q 024135 84 RGRS 87 (272)
Q Consensus 84 ~~~~ 87 (272)
....
T Consensus 84 ~~~~ 87 (103)
T 2dgu_A 84 DQKR 87 (103)
T ss_dssp CCCC
T ss_pred cccc
Confidence 5443
No 61
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.2e-19 Score=125.86 Aligned_cols=83 Identities=24% Similarity=0.458 Sum_probs=75.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecC-CCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEcc
Q 024135 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP-PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (272)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~-~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (272)
..+.++|||+|||+++++++|+++|+.||.|..|.|..+ ..++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 91 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 357899999999999999999999999999999999654 3478999999999999999999999999999999999998
Q ss_pred CCCC
Q 024135 82 GGRG 85 (272)
Q Consensus 82 ~~~~ 85 (272)
....
T Consensus 92 ~~~~ 95 (103)
T 2cq3_A 92 ARVM 95 (103)
T ss_dssp SSCC
T ss_pred cCCC
Confidence 6543
No 62
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=6.3e-20 Score=126.66 Aligned_cols=81 Identities=23% Similarity=0.482 Sum_probs=74.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec--CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEcc
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (272)
.++++|||+|||+++++++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 94 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISN 94 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 5689999999999999999999999999999999955 45677999999999999999999999999999999999997
Q ss_pred CCC
Q 024135 82 GGR 84 (272)
Q Consensus 82 ~~~ 84 (272)
+..
T Consensus 95 ~~~ 97 (100)
T 2do4_A 95 SGP 97 (100)
T ss_dssp CCS
T ss_pred CCC
Confidence 543
No 63
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=7.5e-20 Score=126.47 Aligned_cols=79 Identities=19% Similarity=0.227 Sum_probs=71.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCC--cccCCceEEEEEc
Q 024135 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDG--YDFDGHRLRVELA 80 (272)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g--~~~~g~~i~v~~~ 80 (272)
..|+++|||+|||+++++++|+++|++||.|..|.|.. .+|||||+|.+.++|.+|+..|++ ..|.|+.|.|.|+
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~---~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a 88 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP---FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYS 88 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET---TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC---CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 35789999999999999999999999999999999874 379999999999999999998875 4599999999999
Q ss_pred cCCC
Q 024135 81 HGGR 84 (272)
Q Consensus 81 ~~~~ 84 (272)
....
T Consensus 89 ~~~~ 92 (104)
T 1wex_A 89 TSKR 92 (104)
T ss_dssp SSSS
T ss_pred cCcc
Confidence 7644
No 64
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.82 E-value=5e-20 Score=124.10 Aligned_cols=80 Identities=28% Similarity=0.556 Sum_probs=73.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCC---C-CCceEEEEecChHHHHHHHHhcCCcccCCceEEEEE
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPP---R-PPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~---~-~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~ 79 (272)
..+++|||+|||+++++++|.++|+.||.|..+.+..+. . ++|||||+|.+.++|.+|+..|||..|.|+.|.|.+
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 467899999999999999999999999999999995532 2 789999999999999999999999999999999999
Q ss_pred ccCC
Q 024135 80 AHGG 83 (272)
Q Consensus 80 ~~~~ 83 (272)
+..+
T Consensus 82 a~~~ 85 (88)
T 4a8x_A 82 VLAP 85 (88)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 9654
No 65
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.5e-19 Score=126.48 Aligned_cols=78 Identities=23% Similarity=0.305 Sum_probs=72.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCC-----ceEEEE
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG-----HRLRVE 78 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g-----~~i~v~ 78 (272)
.+.++|||+|||+++|+++|+++|..||+|..|.|..+ |||||+|.+.++|++||..|||..|.| +.|.|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~ 88 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 88 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT----TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC----CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEE
Confidence 56789999999999999999999999999999999865 899999999999999999999999999 999999
Q ss_pred EccCCCC
Q 024135 79 LAHGGRG 85 (272)
Q Consensus 79 ~~~~~~~ 85 (272)
++.....
T Consensus 89 ~a~~~~~ 95 (108)
T 1x4c_A 89 VDGPRSP 95 (108)
T ss_dssp ESSCCSC
T ss_pred eCCCCCC
Confidence 9986443
No 66
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.82 E-value=2.9e-20 Score=124.96 Aligned_cols=79 Identities=27% Similarity=0.461 Sum_probs=72.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEc
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (272)
.+.++|||+|||+++++++|+++|+.||.|..+.+.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 4678999999999999999999999999999999954 4677899999999999999999999999999999999998
Q ss_pred cC
Q 024135 81 HG 82 (272)
Q Consensus 81 ~~ 82 (272)
..
T Consensus 84 ~~ 85 (87)
T 3bs9_A 84 TR 85 (87)
T ss_dssp C-
T ss_pred CC
Confidence 64
No 67
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=7.3e-20 Score=127.25 Aligned_cols=81 Identities=25% Similarity=0.489 Sum_probs=74.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecC----CCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEE
Q 024135 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP----PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (272)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~----~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~ 78 (272)
..+.++|||+|||+++++++|+++|+.|| |..|.|..+ +.++|||||+|.+.++|++|+ .||+..|.|+.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 45789999999999999999999999999 999999654 677999999999999999999 899999999999999
Q ss_pred EccCCCC
Q 024135 79 LAHGGRG 85 (272)
Q Consensus 79 ~~~~~~~ 85 (272)
++.....
T Consensus 90 ~a~~~~~ 96 (104)
T 1wi8_A 90 VADQAQD 96 (104)
T ss_dssp ECCCCCC
T ss_pred EccCCCC
Confidence 9976543
No 68
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=3.1e-20 Score=128.00 Aligned_cols=83 Identities=24% Similarity=0.418 Sum_probs=76.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCee-EEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCce---
Q 024135 2 SSRASRTLYVGNLPGDIREREVEDLFYKYGPIA-HIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHR--- 74 (272)
Q Consensus 2 ~~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~-~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~--- 74 (272)
+..++++|||+|||+++++++|+++|+.||+|. .+.|.. ++.++|||||+|.+.++|++|+..|||..|.|+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 456889999999999999999999999999999 999854 4677899999999999999999999999999999
Q ss_pred -EEEEEccCCC
Q 024135 75 -LRVELAHGGR 84 (272)
Q Consensus 75 -i~v~~~~~~~ 84 (272)
|.|.|+....
T Consensus 85 ~l~v~~a~~~~ 95 (99)
T 2div_A 85 RFKLNYATYSG 95 (99)
T ss_dssp ECCEEETTCCS
T ss_pred eEEEeecCCCC
Confidence 9999997654
No 69
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.1e-19 Score=126.99 Aligned_cols=83 Identities=25% Similarity=0.462 Sum_probs=76.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec----CCCCCceEEEEecChHHHHHHHHhc-CCcccCCceEEE
Q 024135 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI----PPRPPGYAFVEFEEARDAEDAIRGR-DGYDFDGHRLRV 77 (272)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~----~~~~~g~afV~f~~~~~a~~a~~~l-~g~~~~g~~i~v 77 (272)
..++++|||+|||+++++++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|.+|+..| |+..|.|+.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 35789999999999999999999999999999999953 4677999999999999999999999 999999999999
Q ss_pred EEccCCCC
Q 024135 78 ELAHGGRG 85 (272)
Q Consensus 78 ~~~~~~~~ 85 (272)
.|+.....
T Consensus 92 ~~a~~~~~ 99 (107)
T 2cph_A 92 EWADSEVT 99 (107)
T ss_dssp EECCCCCC
T ss_pred EeCCCCCC
Confidence 99986543
No 70
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3.7e-20 Score=128.56 Aligned_cols=82 Identities=34% Similarity=0.574 Sum_probs=75.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEc
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (272)
.++++|||+|||+++++++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 92 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEC
Confidence 5689999999999999999999999999999999964 4677899999999999999999999999999999999999
Q ss_pred cCCCC
Q 024135 81 HGGRG 85 (272)
Q Consensus 81 ~~~~~ 85 (272)
.....
T Consensus 93 ~~~~~ 97 (103)
T 2cq0_A 93 KPSTN 97 (103)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 86543
No 71
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.2e-19 Score=122.78 Aligned_cols=78 Identities=35% Similarity=0.622 Sum_probs=73.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEccC
Q 024135 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (272)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~ 82 (272)
..+.++|||+|||+++++++|+++|+.||+|..+.+. ++||||+|.+.++|++|+..|||..|.|+.|.|.++..
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 79 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-----KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKN 79 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-----TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCC
Confidence 4678999999999999999999999999999999998 68999999999999999999999999999999999986
Q ss_pred CCC
Q 024135 83 GRG 85 (272)
Q Consensus 83 ~~~ 85 (272)
...
T Consensus 80 ~~~ 82 (90)
T 2dnq_A 80 KSK 82 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 554
No 72
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2.3e-19 Score=127.25 Aligned_cols=82 Identities=24% Similarity=0.410 Sum_probs=75.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEE
Q 024135 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (272)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~ 79 (272)
..+.++|||+|||+++|+++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|++|+..||+ .|.|+.|.|.+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 46789999999999999999999999999999999965 467899999999999999999999998 89999999999
Q ss_pred ccCCCC
Q 024135 80 AHGGRG 85 (272)
Q Consensus 80 ~~~~~~ 85 (272)
+.....
T Consensus 93 a~~~~~ 98 (116)
T 2cqd_A 93 AYLGAK 98 (116)
T ss_dssp STTTCC
T ss_pred cccCCC
Confidence 976543
No 73
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1.9e-19 Score=127.38 Aligned_cols=83 Identities=20% Similarity=0.288 Sum_probs=75.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec--CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEc
Q 024135 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (272)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (272)
..++++|||+|||+++++++|+++|..||.|..|.|.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 46789999999999999999999999999999999954 4666899999999999999999999999999999999999
Q ss_pred cCCCC
Q 024135 81 HGGRG 85 (272)
Q Consensus 81 ~~~~~ 85 (272)
.....
T Consensus 92 ~~~~~ 96 (114)
T 2do0_A 92 ERALP 96 (114)
T ss_dssp SCCCC
T ss_pred ccCCC
Confidence 75443
No 74
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.5e-19 Score=122.75 Aligned_cols=79 Identities=39% Similarity=0.650 Sum_probs=73.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEcc
Q 024135 2 SSRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (272)
Q Consensus 2 ~~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (272)
...++++|||+|||+++++++|+++|+.||.|..+.+. ++||||+|.+.++|.+|+..|||..|.|+.|.|.++.
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 80 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-----KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLST 80 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC-----SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE-----CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 34678999999999999999999999999999999997 5599999999999999999999999999999999997
Q ss_pred CCCC
Q 024135 82 GGRG 85 (272)
Q Consensus 82 ~~~~ 85 (272)
....
T Consensus 81 ~~~~ 84 (92)
T 2dgt_A 81 SRLR 84 (92)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 6543
No 75
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4.2e-20 Score=128.99 Aligned_cols=80 Identities=28% Similarity=0.514 Sum_probs=74.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecC---CCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEc
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~---~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (272)
.++++|||+|||+++++++|+++|+.||.|..|.|..+ +.++|||||+|.+.++|++|+..|||..|.|+.|.|.++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 46788999999999999999999999999999999653 677899999999999999999999999999999999998
Q ss_pred cCC
Q 024135 81 HGG 83 (272)
Q Consensus 81 ~~~ 83 (272)
...
T Consensus 101 ~~~ 103 (106)
T 1p27_B 101 FVR 103 (106)
T ss_dssp EES
T ss_pred cCC
Confidence 753
No 76
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.82 E-value=6.8e-20 Score=129.83 Aligned_cols=82 Identities=20% Similarity=0.473 Sum_probs=75.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEc
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (272)
.+.++|||+|||+++++++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.|+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 4678999999999999999999999999999999954 4677899999999999999999999999999999999999
Q ss_pred cCCCC
Q 024135 81 HGGRG 85 (272)
Q Consensus 81 ~~~~~ 85 (272)
.....
T Consensus 103 ~~~~~ 107 (115)
T 2cpz_A 103 RSKND 107 (115)
T ss_dssp CCSCC
T ss_pred CCCCc
Confidence 76543
No 77
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.82 E-value=1.2e-19 Score=126.59 Aligned_cols=83 Identities=19% Similarity=0.346 Sum_probs=75.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCccc---CCceEE
Q 024135 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDF---DGHRLR 76 (272)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~---~g~~i~ 76 (272)
..+.++|||+|||+++++++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|.+|+..|||..+ .|+.|.
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 46789999999999999999999999999999999965 467899999999999999999999999987 899999
Q ss_pred EEEccCCCC
Q 024135 77 VELAHGGRG 85 (272)
Q Consensus 77 v~~~~~~~~ 85 (272)
|.++.....
T Consensus 90 v~~a~~~~~ 98 (106)
T 2dgp_A 90 VKPADSESR 98 (106)
T ss_dssp EEECCCCSC
T ss_pred EEECCcccc
Confidence 999976543
No 78
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.7e-19 Score=126.99 Aligned_cols=82 Identities=22% Similarity=0.464 Sum_probs=75.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecC---CCCCceEEEEecChHHHHHHHHhcC------CcccCCce
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRD------GYDFDGHR 74 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~---~~~~g~afV~f~~~~~a~~a~~~l~------g~~~~g~~ 74 (272)
.++++|||+|||+++++++|+++|+.||.|..|.|..+ +.++|||||+|.+.++|.+|+..|| +..|.|+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 56889999999999999999999999999999999643 6789999999999999999999999 99999999
Q ss_pred EEEEEccCCCC
Q 024135 75 LRVELAHGGRG 85 (272)
Q Consensus 75 i~v~~~~~~~~ 85 (272)
|.|.++.....
T Consensus 93 l~v~~a~~~~~ 103 (111)
T 1x4h_A 93 LKVDLAVTRDE 103 (111)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEECCCCcc
Confidence 99999976543
No 79
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=3.7e-20 Score=128.87 Aligned_cols=79 Identities=27% Similarity=0.348 Sum_probs=71.6
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcC--CcccCCceEEEEE
Q 024135 3 SRASRTLYVGNLPGD-IREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRD--GYDFDGHRLRVEL 79 (272)
Q Consensus 3 ~~~~~~l~v~nL~~~-~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~--g~~~~g~~i~v~~ 79 (272)
..++++|||+|||++ +++++|+++|++||.|..|.|. ..+|||||+|.+.++|.+|+..|| +..|.|+.|.|.+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~---~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 98 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILM---RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDL 98 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEE---TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEe---cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 468999999999998 9999999999999999999997 458999999999999999999886 4669999999999
Q ss_pred ccCCC
Q 024135 80 AHGGR 84 (272)
Q Consensus 80 ~~~~~ 84 (272)
+....
T Consensus 99 a~~~~ 103 (112)
T 1x4f_A 99 SEKYK 103 (112)
T ss_dssp ECSCS
T ss_pred Ccccc
Confidence 97544
No 80
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.82 E-value=1.2e-19 Score=126.43 Aligned_cols=82 Identities=28% Similarity=0.383 Sum_probs=75.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec--CCCCCceEEEEecChHHHHHHHHhcCCcccCC---ceEEEE
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG---HRLRVE 78 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g---~~i~v~ 78 (272)
.++++|||+|||+++++++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|.+|+..|||..|.| +.|.|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 4689999999999999999999999999999999964 46668999999999999999999999999998 999999
Q ss_pred EccCCCC
Q 024135 79 LAHGGRG 85 (272)
Q Consensus 79 ~~~~~~~ 85 (272)
++.....
T Consensus 93 ~a~~~~~ 99 (105)
T 2dnh_A 93 FADTDKE 99 (105)
T ss_dssp ESCSSCC
T ss_pred ECccCcc
Confidence 9986553
No 81
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=5.6e-20 Score=125.71 Aligned_cols=79 Identities=35% Similarity=0.570 Sum_probs=73.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecC---CCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEc
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~---~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (272)
.++++|||+|||+++++++|+++|+.||.|..|.+..+ +.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGP 92 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 56789999999999999999999999999999999653 567899999999999999999999999999999999998
Q ss_pred cC
Q 024135 81 HG 82 (272)
Q Consensus 81 ~~ 82 (272)
+.
T Consensus 93 ~~ 94 (95)
T 2cqc_A 93 SS 94 (95)
T ss_dssp SC
T ss_pred CC
Confidence 63
No 82
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.81 E-value=7.9e-20 Score=127.62 Aligned_cols=79 Identities=16% Similarity=0.210 Sum_probs=71.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccC-CeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEccC
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYG-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G-~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~ 82 (272)
...++|||+|||+++++++|+++|+.|| +|..+.+.. ..++|||||+|.+.++|++|+..|||..|.|+.|.|.++..
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~-~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT-RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDN 104 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS-CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc-CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 4567999999999999999999999999 999998853 35789999999999999999999999999999999999875
Q ss_pred C
Q 024135 83 G 83 (272)
Q Consensus 83 ~ 83 (272)
.
T Consensus 105 ~ 105 (111)
T 2jvr_A 105 P 105 (111)
T ss_dssp -
T ss_pred C
Confidence 3
No 83
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.81 E-value=6.6e-20 Score=125.36 Aligned_cols=80 Identities=28% Similarity=0.496 Sum_probs=73.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecC--CCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEc
Q 024135 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP--PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (272)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~--~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (272)
..+.++|||+|||+++++++|+++|+.||+|..|.|..+ +.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 357789999999999999999999999999999999643 667899999999999999999999999999999999998
Q ss_pred cC
Q 024135 81 HG 82 (272)
Q Consensus 81 ~~ 82 (272)
+.
T Consensus 93 ~~ 94 (95)
T 2ywk_A 93 SS 94 (95)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 84
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1.7e-19 Score=123.75 Aligned_cols=77 Identities=26% Similarity=0.486 Sum_probs=72.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccC--CceEEEEEcc
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFD--GHRLRVELAH 81 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~--g~~i~v~~~~ 81 (272)
.++++|||+|||+++++++|+++|+.||.|..|.+... +|||||+|.+.++|++|+..|||..|. |+.|.|.|+.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~ 91 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG---DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAK 91 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS---SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC---CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECC
Confidence 57799999999999999999999999999999998743 789999999999999999999999999 9999999997
Q ss_pred CC
Q 024135 82 GG 83 (272)
Q Consensus 82 ~~ 83 (272)
..
T Consensus 92 ~~ 93 (97)
T 1why_A 92 SG 93 (97)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 85
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=7.6e-20 Score=126.43 Aligned_cols=78 Identities=17% Similarity=0.365 Sum_probs=72.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecC--CCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEcc
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP--PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~--~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (272)
.+.++|||+|||+++|+++|.++|+.||+|.+|.|..+ +.++|||||+|.+.++|.+|+. +||..|.|+.|.|.++.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 45789999999999999999999999999999999653 6789999999999999999999 99999999999999876
Q ss_pred C
Q 024135 82 G 82 (272)
Q Consensus 82 ~ 82 (272)
.
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 4
No 86
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.9e-19 Score=121.77 Aligned_cols=77 Identities=32% Similarity=0.579 Sum_probs=72.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEccC
Q 024135 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (272)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~ 82 (272)
..+.++|||+|||+++|+++|+++|+.||.|..+.+. ++||||+|.+.++|++|+..|||..|.|+.|.|.++..
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 80 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV-----KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTK 80 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC-----SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCC
Confidence 3578999999999999999999999999999999997 56999999999999999999999999999999999986
Q ss_pred CC
Q 024135 83 GR 84 (272)
Q Consensus 83 ~~ 84 (272)
..
T Consensus 81 ~~ 82 (90)
T 2dnp_A 81 GQ 82 (90)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 87
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.7e-19 Score=125.42 Aligned_cols=80 Identities=24% Similarity=0.449 Sum_probs=74.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEccC
Q 024135 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (272)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~ 82 (272)
..+.++|||+|||+++++++|+++|+.||.|..|.|..+ +|||||+|.+.++|.+|+..|||..|.|+.|.|.|++.
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~---~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 98 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE---KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKE 98 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC---CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCC
Confidence 356789999999999999999999999999999999755 79999999999999999999999999999999999986
Q ss_pred CCC
Q 024135 83 GRG 85 (272)
Q Consensus 83 ~~~ 85 (272)
...
T Consensus 99 ~~~ 101 (109)
T 1x4g_A 99 SPD 101 (109)
T ss_dssp CCS
T ss_pred CCC
Confidence 543
No 88
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.81 E-value=1.1e-19 Score=127.68 Aligned_cols=80 Identities=26% Similarity=0.476 Sum_probs=74.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEc
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (272)
.++++|||+|||+++++++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 5678999999999999999999999999999999964 4677999999999999999999999999999999999999
Q ss_pred cCC
Q 024135 81 HGG 83 (272)
Q Consensus 81 ~~~ 83 (272)
...
T Consensus 104 ~~~ 106 (110)
T 1oo0_B 104 FVK 106 (110)
T ss_dssp EES
T ss_pred ccC
Confidence 754
No 89
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.81 E-value=8.2e-20 Score=131.71 Aligned_cols=81 Identities=36% Similarity=0.600 Sum_probs=75.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEc
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (272)
.++++|||+|||+++++++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.|+
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a 123 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 123 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 5788999999999999999999999999999999965 3678999999999999999999999999999999999998
Q ss_pred cCCC
Q 024135 81 HGGR 84 (272)
Q Consensus 81 ~~~~ 84 (272)
....
T Consensus 124 ~~~~ 127 (129)
T 2kxn_B 124 ITKR 127 (129)
T ss_dssp SSSS
T ss_pred cCCC
Confidence 7543
No 90
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.81 E-value=1.6e-20 Score=127.04 Aligned_cols=78 Identities=17% Similarity=0.223 Sum_probs=67.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccC--CeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEcc
Q 024135 7 RTLYVGNLPGDIREREVEDLFYKYG--PIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (272)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G--~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (272)
.+|||+|||+++|+++|+++|+.|| .|.++.+.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5899999999999999999999999 999999854 56789999999999999999999999999999999999987
Q ss_pred CCC
Q 024135 82 GGR 84 (272)
Q Consensus 82 ~~~ 84 (272)
+..
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 654
No 91
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.2e-19 Score=126.76 Aligned_cols=83 Identities=28% Similarity=0.489 Sum_probs=75.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCee--------EEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccC
Q 024135 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIA--------HIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFD 71 (272)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~--------~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~ 71 (272)
..++++|||+|||+++|+++|+++|+.||.|. .|.|.. ++.++|||||+|.+.++|++|+..|||..|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 35789999999999999999999999999998 588854 4678999999999999999999999999999
Q ss_pred CceEEEEEccCCCC
Q 024135 72 GHRLRVELAHGGRG 85 (272)
Q Consensus 72 g~~i~v~~~~~~~~ 85 (272)
|+.|.|.++.....
T Consensus 92 g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 92 GSKLKVSLARKKPP 105 (113)
T ss_dssp TEECEEECSSCCCC
T ss_pred CCEEEEEECCCCCC
Confidence 99999999986543
No 92
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.81 E-value=2.3e-19 Score=124.52 Aligned_cols=81 Identities=28% Similarity=0.529 Sum_probs=73.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecC---CCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEE
Q 024135 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (272)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~---~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~ 79 (272)
..+.++|||+|||+++++++|+++|+.|| |..|.|..+ +.++|||||+|.+.++|++|+ .|||..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 46789999999999999999999999997 999999653 677899999999999999999 7999999999999999
Q ss_pred ccCCCC
Q 024135 80 AHGGRG 85 (272)
Q Consensus 80 ~~~~~~ 85 (272)
+.....
T Consensus 90 a~~~~~ 95 (103)
T 2dng_A 90 AEGRKQ 95 (103)
T ss_dssp CCCCCC
T ss_pred ecCCCC
Confidence 976543
No 93
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.81 E-value=1.3e-19 Score=124.75 Aligned_cols=79 Identities=29% Similarity=0.452 Sum_probs=72.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeE--------EEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccC
Q 024135 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAH--------IDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFD 71 (272)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~--------v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~ 71 (272)
..+.++|||+|||+++++++|+++|+.||.|.. +.+.. ++.++|||||+|.+.++|.+|+..|||..|.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 357899999999999999999999999999999 88854 4677899999999999999999999999999
Q ss_pred CceEEEEEcc
Q 024135 72 GHRLRVELAH 81 (272)
Q Consensus 72 g~~i~v~~~~ 81 (272)
|+.|.|.+++
T Consensus 90 g~~l~V~~A~ 99 (99)
T 2la6_A 90 GNPIKVSFAT 99 (99)
T ss_dssp SSBCEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999974
No 94
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.81 E-value=2.4e-19 Score=121.04 Aligned_cols=78 Identities=23% Similarity=0.485 Sum_probs=72.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEcc
Q 024135 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (272)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (272)
..++|||+|||+++++++|+++|+.||.|..+.+.. ++.++|||||+|.+.++|.+|+ .|||..|.|+.|.|.+++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 468999999999999999999999999999999954 5678999999999999999999 799999999999999997
Q ss_pred CC
Q 024135 82 GG 83 (272)
Q Consensus 82 ~~ 83 (272)
..
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 95
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=8.9e-20 Score=128.26 Aligned_cols=81 Identities=23% Similarity=0.360 Sum_probs=73.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHH---HHhhccCCeeEEEeecCC------CCCceEEEEecChHHHHHHHHhcCCcccCCce
Q 024135 4 RASRTLYVGNLPGDIREREVE---DLFYKYGPIAHIDLKIPP------RPPGYAFVEFEEARDAEDAIRGRDGYDFDGHR 74 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~---~~F~~~G~v~~v~~~~~~------~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~ 74 (272)
...++|||+|||+++++++|. ++|++||+|..|.|..+. .++|||||+|.+.++|++|+..|||..|.|+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 467899999999999999999 999999999999996542 45699999999999999999999999999999
Q ss_pred EEEEEccCCC
Q 024135 75 LRVELAHGGR 84 (272)
Q Consensus 75 i~v~~~~~~~ 84 (272)
|.|.|+....
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999997544
No 96
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=3.1e-19 Score=122.92 Aligned_cols=78 Identities=35% Similarity=0.531 Sum_probs=72.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEccCC
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~ 83 (272)
.++++|||+|||+++++++|+++|+.||+|..|.+.. .+|||||+|.+.++|.+|+..|||..|.|+.|.|.++...
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~---~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK---DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHS 89 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEET---TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEec---CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCC
Confidence 5678999999999999999999999999999999974 3799999999999999999999999999999999999764
Q ss_pred C
Q 024135 84 R 84 (272)
Q Consensus 84 ~ 84 (272)
.
T Consensus 90 ~ 90 (99)
T 2cpj_A 90 A 90 (99)
T ss_dssp S
T ss_pred C
Confidence 4
No 97
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.80 E-value=2.7e-19 Score=124.48 Aligned_cols=80 Identities=26% Similarity=0.436 Sum_probs=73.4
Q ss_pred CCCCeEEEcCCCCCC------CHHHHHHHhhccCCeeEEEee-cCCCCCceEEEEecChHHHHHHHHhcCCcccCCc-eE
Q 024135 4 RASRTLYVGNLPGDI------REREVEDLFYKYGPIAHIDLK-IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGH-RL 75 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~------t~~~l~~~F~~~G~v~~v~~~-~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~-~i 75 (272)
..+++|||+|||+.+ |+++|.++|++||.|..|.|. .++.++|||||+|.+.++|.+|+..|||..|.|+ .|
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 457899999999999 789999999999999999986 3578899999999999999999999999999999 99
Q ss_pred EEEEccCC
Q 024135 76 RVELAHGG 83 (272)
Q Consensus 76 ~v~~~~~~ 83 (272)
.|.++...
T Consensus 93 ~V~~a~~~ 100 (105)
T 2nlw_A 93 RVNLFTDF 100 (105)
T ss_dssp EEECSCCC
T ss_pred EEEEcchH
Confidence 99998653
No 98
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.80 E-value=1.3e-19 Score=129.01 Aligned_cols=79 Identities=22% Similarity=0.495 Sum_probs=72.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEE
Q 024135 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (272)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~ 79 (272)
..+.++|||+|||+++++++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|+|
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 35679999999999999999999999999999999964 467899999999999999999999999999999999999
Q ss_pred cc
Q 024135 80 AH 81 (272)
Q Consensus 80 ~~ 81 (272)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 74
No 99
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=2.4e-19 Score=123.98 Aligned_cols=80 Identities=28% Similarity=0.440 Sum_probs=71.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEccCC
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~ 83 (272)
.++++|||+|||+++|+++|+++|+.||.|. +....++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++...
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~-~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFIK-VPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPR 91 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEEE-CCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEEE-EEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCC
Confidence 5789999999999999999999999999883 222346778999999999999999999999999999999999999765
Q ss_pred C
Q 024135 84 R 84 (272)
Q Consensus 84 ~ 84 (272)
.
T Consensus 92 ~ 92 (101)
T 2fc9_A 92 G 92 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 100
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.80 E-value=1.5e-19 Score=130.20 Aligned_cols=83 Identities=27% Similarity=0.485 Sum_probs=75.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEc
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (272)
.++++|||+|||+++|+++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.|+
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 4678999999999999999999999999999999953 4677999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 024135 81 HGGRGR 86 (272)
Q Consensus 81 ~~~~~~ 86 (272)
......
T Consensus 100 ~~~~~~ 105 (126)
T 3ex7_B 100 FVRGPP 105 (126)
T ss_dssp EESSSC
T ss_pred cCCCCC
Confidence 865443
No 101
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.80 E-value=1.7e-19 Score=126.11 Aligned_cols=78 Identities=26% Similarity=0.472 Sum_probs=72.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec--CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEcc
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (272)
.++++|||+|||+.+++++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++.
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 4688999999999999999999999999999999854 56778999999999999999999999999999999999984
No 102
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.80 E-value=1.3e-19 Score=126.72 Aligned_cols=80 Identities=29% Similarity=0.559 Sum_probs=74.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEE
Q 024135 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (272)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~ 79 (272)
..++++|||+|||+.+++++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|..|+..|||..|.|+.|.|.+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 35789999999999999999999999999999999964 467789999999999999999999999999999999999
Q ss_pred ccC
Q 024135 80 AHG 82 (272)
Q Consensus 80 ~~~ 82 (272)
++.
T Consensus 103 a~~ 105 (108)
T 2jrs_A 103 VTE 105 (108)
T ss_dssp SCS
T ss_pred ccc
Confidence 865
No 103
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.1e-19 Score=125.10 Aligned_cols=80 Identities=16% Similarity=0.280 Sum_probs=72.1
Q ss_pred CCCCCCeEEE--cCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCccc-----CCce
Q 024135 2 SSRASRTLYV--GNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDF-----DGHR 74 (272)
Q Consensus 2 ~~~~~~~l~v--~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~-----~g~~ 74 (272)
+..|+++||| +||++++++++|+++|++||+|..|.|.. .+|||||+|.+.++|++|+..|||..| .|.+
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~---~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~ 97 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP---NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 97 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT---TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcE
Confidence 4578999999 77999999999999999999999998863 379999999999999999999999988 6889
Q ss_pred EEEEEccCCC
Q 024135 75 LRVELAHGGR 84 (272)
Q Consensus 75 i~v~~~~~~~ 84 (272)
|.|.|+....
T Consensus 98 l~v~~a~~~p 107 (114)
T 2cq2_A 98 LYLNFVEKVQ 107 (114)
T ss_dssp CEEEEESCCC
T ss_pred EEEEecccCc
Confidence 9999987543
No 104
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=2.1e-19 Score=124.97 Aligned_cols=83 Identities=22% Similarity=0.385 Sum_probs=75.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhc-cCCeeEEEeec--CCCCCceEEEEecChHHHHHHHHhcCCcc-cCCceEEEE
Q 024135 3 SRASRTLYVGNLPGDIREREVEDLFYK-YGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYD-FDGHRLRVE 78 (272)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~-~G~v~~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~g~~-~~g~~i~v~ 78 (272)
..++++|||+|||+++|+++|+++|+. ||.|..|.|.. ++.++|||||+|.+.++|.+|+..|||.. |.|+.|.|.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 457899999999999999999999999 99999999954 56778999999999999999999999999 999999999
Q ss_pred EccCCCC
Q 024135 79 LAHGGRG 85 (272)
Q Consensus 79 ~~~~~~~ 85 (272)
++.....
T Consensus 86 ~a~~~~~ 92 (104)
T 2dhg_A 86 VAIPKAS 92 (104)
T ss_dssp BCCCCCS
T ss_pred EccCCCc
Confidence 9975543
No 105
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.80 E-value=3.4e-19 Score=122.09 Aligned_cols=75 Identities=27% Similarity=0.550 Sum_probs=71.1
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEcc
Q 024135 3 SRASRTLYVGNLPG-DIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (272)
Q Consensus 3 ~~~~~~l~v~nL~~-~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (272)
..++++|||+|||+ ++++++|+++|+.||.|..+.+. +|||||+|.+.++|.+|+..|||..|.|+.|.|.+++
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 93 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSS 93 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-----SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence 46789999999998 99999999999999999999985 7999999999999999999999999999999999986
Q ss_pred C
Q 024135 82 G 82 (272)
Q Consensus 82 ~ 82 (272)
.
T Consensus 94 ~ 94 (97)
T 2xnq_A 94 S 94 (97)
T ss_dssp C
T ss_pred C
Confidence 5
No 106
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.9e-19 Score=126.06 Aligned_cols=80 Identities=25% Similarity=0.498 Sum_probs=73.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecC-CCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEcc
Q 024135 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP-PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (272)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~-~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (272)
..+.++|||+|||.++++++|+++|+.||.|..+.+..+ +.++|||||+|.+.++|++|+..|||..|.|+.|.|.++.
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 105 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 105 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 357899999999999999999999999999999999643 4578999999999999999999999999999999999986
Q ss_pred C
Q 024135 82 G 82 (272)
Q Consensus 82 ~ 82 (272)
.
T Consensus 106 ~ 106 (109)
T 2err_A 106 A 106 (109)
T ss_dssp C
T ss_pred C
Confidence 5
No 107
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.3e-19 Score=127.09 Aligned_cols=81 Identities=25% Similarity=0.437 Sum_probs=73.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCe----eEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEE
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPI----AHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v----~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~ 79 (272)
.++++|||+|||+++|+++|.++|+.||.| ..+.+. ++.++|||||+|.+.++|..|+..|||..|.|+.|.|.|
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~-~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM-TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE-CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC-CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 467999999999999999999999999998 455554 788899999999999999999999999999999999999
Q ss_pred ccCCCC
Q 024135 80 AHGGRG 85 (272)
Q Consensus 80 ~~~~~~ 85 (272)
+.....
T Consensus 102 a~~~~~ 107 (115)
T 2cpx_A 102 GKNKKQ 107 (115)
T ss_dssp CCCCSC
T ss_pred ccCCCC
Confidence 986554
No 108
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=1.5e-19 Score=126.94 Aligned_cols=78 Identities=27% Similarity=0.328 Sum_probs=72.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEccCC
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~ 83 (272)
++.++|||+|||+++++++|+++|++||.|..|.|.. .++||||+|.+.++|+.|+..|||..|.|+.|.|.|+...
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~---~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE---GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS---SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC---CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 4578999999999999999999999999999999863 5789999999999999999999999999999999999754
Q ss_pred C
Q 024135 84 R 84 (272)
Q Consensus 84 ~ 84 (272)
.
T Consensus 85 ~ 85 (111)
T 1whx_A 85 V 85 (111)
T ss_dssp T
T ss_pred c
Confidence 3
No 109
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.80 E-value=4.3e-19 Score=130.01 Aligned_cols=83 Identities=34% Similarity=0.665 Sum_probs=75.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEc
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (272)
.+.++|||+|||.++++++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 119 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4678999999999999999999999999999999964 3567899999999999999999999999999999999999
Q ss_pred cCCCCC
Q 024135 81 HGGRGR 86 (272)
Q Consensus 81 ~~~~~~ 86 (272)
......
T Consensus 120 ~~~~~~ 125 (139)
T 1u6f_A 120 ASGHQR 125 (139)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 865543
No 110
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.80 E-value=5.2e-20 Score=126.93 Aligned_cols=79 Identities=24% Similarity=0.415 Sum_probs=73.0
Q ss_pred CCCCeEEEcCCCC------CCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCC-c
Q 024135 4 RASRTLYVGNLPG------DIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG-H 73 (272)
Q Consensus 4 ~~~~~l~v~nL~~------~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g-~ 73 (272)
..+++|||+|||. ++++++|.++|++||.|..|.|+. ++.++|||||+|.+.++|.+|+..|||..|.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3578999999999 999999999999999999999954 47789999999999999999999999999999 9
Q ss_pred eEEEEEccC
Q 024135 74 RLRVELAHG 82 (272)
Q Consensus 74 ~i~v~~~~~ 82 (272)
.|.|.++.+
T Consensus 84 ~l~V~~a~~ 92 (100)
T 3ns6_A 84 RLFLYTMKD 92 (100)
T ss_dssp BCEEEESHH
T ss_pred EEEEEECch
Confidence 999999863
No 111
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=8e-19 Score=120.84 Aligned_cols=76 Identities=30% Similarity=0.462 Sum_probs=71.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcc--CCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEcc
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKY--GPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~--G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (272)
.++++|||+|||+++|+++|+++|+.| |.|..+.+. +|||||+|.+.++|.+|+..|||..|.|+.|.|.+++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-----RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAK 87 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-----SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCC
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-----CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 578999999999999999999999999 999999876 6899999999999999999999999999999999997
Q ss_pred CCC
Q 024135 82 GGR 84 (272)
Q Consensus 82 ~~~ 84 (272)
...
T Consensus 88 ~~~ 90 (99)
T 2cpd_A 88 PVD 90 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 112
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.80 E-value=2.7e-19 Score=125.01 Aligned_cols=77 Identities=32% Similarity=0.580 Sum_probs=72.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEccC
Q 024135 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (272)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~ 82 (272)
..++++|||+|||+++++++|+++|+.||.|..+.+. +|||||+|.+.++|++|+..|||..|.|+.|.|.|+..
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-----kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-----NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKL 102 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 3578999999999999999999999999999999998 79999999999999999999999999999999999976
Q ss_pred CC
Q 024135 83 GR 84 (272)
Q Consensus 83 ~~ 84 (272)
..
T Consensus 103 ~~ 104 (108)
T 2jvo_A 103 PA 104 (108)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 113
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=7.7e-19 Score=123.16 Aligned_cols=83 Identities=24% Similarity=0.333 Sum_probs=74.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCC-eeEEEee-c---CCCCCceEEEEecChHHHHHHHHhcC--CcccCCceE
Q 024135 3 SRASRTLYVGNLPGDIREREVEDLFYKYGP-IAHIDLK-I---PPRPPGYAFVEFEEARDAEDAIRGRD--GYDFDGHRL 75 (272)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~-v~~v~~~-~---~~~~~g~afV~f~~~~~a~~a~~~l~--g~~~~g~~i 75 (272)
+.++++|||+|||+++|+++|+++|..||. |..+.+. . ++.++|||||+|.+.++|..|+..|| +..|.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 467899999999999999999999999998 9999986 3 35789999999999999999999996 589999999
Q ss_pred EEEEccCCCC
Q 024135 76 RVELAHGGRG 85 (272)
Q Consensus 76 ~v~~~~~~~~ 85 (272)
.|.|+.....
T Consensus 85 ~V~~a~~~~~ 94 (109)
T 2dis_A 85 AVDWAEPEID 94 (109)
T ss_dssp EEEESCSSCS
T ss_pred EEEEcCCCCC
Confidence 9999986544
No 114
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=2.2e-19 Score=120.13 Aligned_cols=76 Identities=30% Similarity=0.518 Sum_probs=70.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhc-CCcccCCceEEEEEcc
Q 024135 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGR-DGYDFDGHRLRVELAH 81 (272)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l-~g~~~~g~~i~v~~~~ 81 (272)
..++++|||+|||+++++++|+++|++||.|..+.+.. ++|||||+|.+.++|.+|+..| ||..+.|+.|.|.|++
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~---~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ---RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG---GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC---CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 35778999999999999999999999999999999974 3799999999999999999988 9999999999999974
No 115
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.80 E-value=3.8e-19 Score=119.45 Aligned_cols=77 Identities=23% Similarity=0.533 Sum_probs=70.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEE
Q 024135 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (272)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~ 79 (272)
..+.++|||+|||+++++++|+++|++||.|..+.+.. ++.++|||||+|.+.++|.+|+. +++..|.|+.|.|.+
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 45789999999999999999999999999999999964 46778999999999999999997 688899999999987
Q ss_pred c
Q 024135 80 A 80 (272)
Q Consensus 80 ~ 80 (272)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 116
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.80 E-value=2.1e-19 Score=123.04 Aligned_cols=78 Identities=24% Similarity=0.500 Sum_probs=71.9
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEcc
Q 024135 3 SRASRTLYVGNLPG-DIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (272)
Q Consensus 3 ~~~~~~l~v~nL~~-~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (272)
..++++|||+|||+ ++++++|+++|+.||.|..+.+. +|||||+|.+.++|..|+..|||..|.|+.|.|.+++
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 81 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSS 81 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-----TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcC
Confidence 36889999999998 99999999999999999999996 7899999999999999999999999999999999997
Q ss_pred CCCC
Q 024135 82 GGRG 85 (272)
Q Consensus 82 ~~~~ 85 (272)
....
T Consensus 82 ~~~~ 85 (96)
T 2kvi_A 82 SNAR 85 (96)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 6543
No 117
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.80 E-value=1.1e-19 Score=120.40 Aligned_cols=72 Identities=28% Similarity=0.505 Sum_probs=66.7
Q ss_pred CCeEEEcCCCCCC------CHHHHHHHhhccCCeeEEEee-cCCCCCceEEEEecChHHHHHHHHhcCCcccCCc-eEEE
Q 024135 6 SRTLYVGNLPGDI------REREVEDLFYKYGPIAHIDLK-IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGH-RLRV 77 (272)
Q Consensus 6 ~~~l~v~nL~~~~------t~~~l~~~F~~~G~v~~v~~~-~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~-~i~v 77 (272)
+++|||+|||+.+ ++++|+++|++||+|..+.|. .++.++|||||+|.+.++|.+|+..|||..|.|+ .|.|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 4799999999999 779999999999999999985 4678899999999999999999999999999999 8876
No 118
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.80 E-value=7.9e-19 Score=125.99 Aligned_cols=82 Identities=24% Similarity=0.426 Sum_probs=75.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec--CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEcc
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (272)
.++++|||+|||+++++++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 112 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 112 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 4678999999999999999999999999999999954 46788999999999999999999999999999999999997
Q ss_pred CCCC
Q 024135 82 GGRG 85 (272)
Q Consensus 82 ~~~~ 85 (272)
....
T Consensus 113 ~~~~ 116 (124)
T 2kt5_A 113 SQID 116 (124)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 6543
No 119
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.1e-19 Score=122.31 Aligned_cols=80 Identities=26% Similarity=0.409 Sum_probs=71.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCC-eeEEEeecCCCCCceEEEEecChHHHHHHHHhcCC-cccCCceEEEEE
Q 024135 2 SSRASRTLYVGNLPGDIREREVEDLFYKYGP-IAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDG-YDFDGHRLRVEL 79 (272)
Q Consensus 2 ~~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~-v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g-~~~~g~~i~v~~ 79 (272)
...+.++|||+|||+++|+++|+++|++||. |..+.+. ++|||||+|.+.++|.+|+..||| ..|.|+.|.|.+
T Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 79 (93)
T 2cqh_A 4 GSSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL----KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDY 79 (93)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE----ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc----CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEE
Confidence 3467899999999999999999999999999 6666663 478999999999999999999999 999999999999
Q ss_pred ccCCCC
Q 024135 80 AHGGRG 85 (272)
Q Consensus 80 ~~~~~~ 85 (272)
+.....
T Consensus 80 a~~~~~ 85 (93)
T 2cqh_A 80 SVSKKL 85 (93)
T ss_dssp CCCCCC
T ss_pred ccCccc
Confidence 976543
No 120
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.79 E-value=6.5e-19 Score=123.32 Aligned_cols=80 Identities=15% Similarity=0.369 Sum_probs=71.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEc
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (272)
.+.++|||+|||+++|+++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|.+|+..+ |..|.|+.|.|.++
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVA 101 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEc
Confidence 5789999999999999999999999999999999965 3778999999999999999999965 69999999999999
Q ss_pred cCCC
Q 024135 81 HGGR 84 (272)
Q Consensus 81 ~~~~ 84 (272)
....
T Consensus 102 ~~~~ 105 (109)
T 2rs2_A 102 FPRR 105 (109)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 7544
No 121
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=2.7e-19 Score=124.62 Aligned_cols=82 Identities=16% Similarity=0.318 Sum_probs=74.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEE
Q 024135 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (272)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~ 79 (272)
..+.++|||+|||+++++++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|++|+.. |+..|.|+.|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 46789999999999999999999999999999999965 467789999999999999999997 99999999999999
Q ss_pred ccCCCC
Q 024135 80 AHGGRG 85 (272)
Q Consensus 80 ~~~~~~ 85 (272)
+.....
T Consensus 92 a~~~~~ 97 (105)
T 2dh8_A 92 CTPRGM 97 (105)
T ss_dssp SCCSSC
T ss_pred ccCCCC
Confidence 976543
No 122
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=3.5e-19 Score=122.16 Aligned_cols=78 Identities=28% Similarity=0.508 Sum_probs=70.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEccCCC
Q 024135 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGR 84 (272)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~~ 84 (272)
.+++|||+|||+++++++|+++|+.||.|. +.+.. +.++|||||+|.+.++|++|+..|||..|.|+.|.|.++....
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 95 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW-QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQR 95 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE-ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCCC
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc-CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCC
Confidence 478999999999999999999999999996 55542 4678999999999999999999999999999999999997643
No 123
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.79 E-value=5.7e-19 Score=123.99 Aligned_cols=76 Identities=30% Similarity=0.628 Sum_probs=70.7
Q ss_pred CCCeEEEcCCCCC-CCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEccCC
Q 024135 5 ASRTLYVGNLPGD-IREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (272)
Q Consensus 5 ~~~~l~v~nL~~~-~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~ 83 (272)
++++|||+|||++ +++++|+++|++||.|..|.+ ++|||||+|.+.++|++|+..|||..|.|+.|.|.++...
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 100 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-----HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEP 100 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-----ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-----eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 4589999999999 999999999999999999998 3799999999999999999999999999999999999754
Q ss_pred CC
Q 024135 84 RG 85 (272)
Q Consensus 84 ~~ 85 (272)
..
T Consensus 101 ~~ 102 (110)
T 1wf1_A 101 KP 102 (110)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 124
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.79 E-value=3.8e-19 Score=128.84 Aligned_cols=82 Identities=20% Similarity=0.351 Sum_probs=74.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeE--EEeec---CCCCCceEEEEecChHHHHHHHHhcCCc----ccCC
Q 024135 2 SSRASRTLYVGNLPGDIREREVEDLFYKYGPIAH--IDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGY----DFDG 72 (272)
Q Consensus 2 ~~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~--v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~----~~~g 72 (272)
...++++|||+|||+++|+++|+++|+.||.|.. |.|+. ++.++|||||+|.+. +|.+|+..|||. .|.|
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 3467899999999999999999999999999966 88854 578899999999999 999999999999 9999
Q ss_pred ceEEEEEccCCC
Q 024135 73 HRLRVELAHGGR 84 (272)
Q Consensus 73 ~~i~v~~~~~~~ 84 (272)
+.|.|.++.+..
T Consensus 98 r~l~V~~a~~~~ 109 (131)
T 2m2b_A 98 KTINVEFAKGSK 109 (131)
T ss_dssp CCCCCEECCCSC
T ss_pred EEEEEEECCCCC
Confidence 999999998654
No 125
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.79 E-value=2.8e-19 Score=123.64 Aligned_cols=76 Identities=24% Similarity=0.431 Sum_probs=71.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEccC
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~ 82 (272)
..+++|||+|||.++++++|+++|+.||.|..+.+. .++|||||+|.+.++|..|+..|||..|.|+.|.|.|++.
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY---PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe---cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 347899999999999999999999999999999997 5689999999999999999999999999999999999864
No 126
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.79 E-value=6.2e-19 Score=131.73 Aligned_cols=82 Identities=34% Similarity=0.500 Sum_probs=75.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecC---CCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEc
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~---~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (272)
.++++|||+|||+++|+++|+++|+.||+|..|.|..+ +.++|||||+|.+.++|++|+..||+..|.|+.|.|.|+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 46899999999999999999999999999999999653 567899999999999999999999999999999999999
Q ss_pred cCCCC
Q 024135 81 HGGRG 85 (272)
Q Consensus 81 ~~~~~ 85 (272)
.....
T Consensus 117 ~~~~~ 121 (156)
T 1h2v_Z 117 AGFKE 121 (156)
T ss_dssp SCCCT
T ss_pred CCCCC
Confidence 86543
No 127
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.79 E-value=2.9e-19 Score=126.35 Aligned_cols=79 Identities=56% Similarity=1.003 Sum_probs=66.4
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCcccccceee-eEEEee
Q 024135 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR-AYVRVR 183 (272)
Q Consensus 105 ~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~-~~~~~~ 183 (272)
.....+|||+|||.++++++|+++|.+||.|..|.++.+ +||||+|.+.++|+.|++.||+..++|+.+. ..+.+.
T Consensus 13 ~r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~ 89 (115)
T 3beg_B 13 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 89 (115)
T ss_dssp ----CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT---SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC---CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEec
Confidence 345789999999999999999999999999999999877 7999999999999999999999999996633 234555
Q ss_pred ccc
Q 024135 184 EYD 186 (272)
Q Consensus 184 ~~~ 186 (272)
...
T Consensus 90 ~~~ 92 (115)
T 3beg_B 90 VDG 92 (115)
T ss_dssp ECC
T ss_pred cCC
Confidence 443
No 128
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=8e-20 Score=122.25 Aligned_cols=78 Identities=21% Similarity=0.364 Sum_probs=71.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEE
Q 024135 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (272)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~ 79 (272)
..++++|||+|||+++++++|+++|+.||.|..+.+.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 35889999999999999999999999999999999964 467899999999999999999999999999999988766
Q ss_pred c
Q 024135 80 A 80 (272)
Q Consensus 80 ~ 80 (272)
+
T Consensus 82 ~ 82 (85)
T 1x4e_A 82 P 82 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 129
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.79 E-value=2.6e-19 Score=116.79 Aligned_cols=72 Identities=21% Similarity=0.377 Sum_probs=67.3
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEc
Q 024135 8 TLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (272)
Q Consensus 8 ~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (272)
+|||+|||+++++++|+++|++||+|..+.+.. ++.++|||||+|.+.++|++|+. |||..|.|+.|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 589999999999999999999999999999854 46789999999999999999998 9999999999999875
No 130
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.79 E-value=2.6e-19 Score=123.43 Aligned_cols=77 Identities=27% Similarity=0.540 Sum_probs=69.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec----CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEE
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI----PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~----~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~ 79 (272)
...++|||+|||+++++++|+++|+.|| |..|.|.. ++.++|||||+|.+.++|.+|+ .|||..|.|+.|.|.+
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 4679999999999999999999999999 99999954 4678999999999999999999 7999999999999999
Q ss_pred ccC
Q 024135 80 AHG 82 (272)
Q Consensus 80 ~~~ 82 (272)
+..
T Consensus 95 a~~ 97 (100)
T 2j76_E 95 ADQ 97 (100)
T ss_dssp CCC
T ss_pred ccC
Confidence 865
No 131
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.6e-18 Score=120.24 Aligned_cols=81 Identities=20% Similarity=0.381 Sum_probs=73.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEE
Q 024135 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (272)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~ 79 (272)
..+.++|||+|||+++++++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|++|+. ++..|.|+.|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 45789999999999999999999999999999999965 36778999999999999999999 47899999999999
Q ss_pred ccCCCC
Q 024135 80 AHGGRG 85 (272)
Q Consensus 80 ~~~~~~ 85 (272)
+.....
T Consensus 90 a~~~~~ 95 (103)
T 2cqg_A 90 PNSKQS 95 (103)
T ss_dssp CCTTCC
T ss_pred cCCCCc
Confidence 976543
No 132
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.78 E-value=4.1e-19 Score=132.14 Aligned_cols=77 Identities=16% Similarity=0.264 Sum_probs=71.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccC--CeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEE
Q 024135 5 ASRTLYVGNLPGDIREREVEDLFYKYG--PIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (272)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G--~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~ 79 (272)
..++|||+|||+++|+++|+++|+.|| .|..|.|.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 468999999999999999999999999 999999954 577899999999999999999999999999999999999
Q ss_pred cc
Q 024135 80 AH 81 (272)
Q Consensus 80 ~~ 81 (272)
+.
T Consensus 134 a~ 135 (156)
T 3n9u_C 134 AT 135 (156)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 133
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.78 E-value=3.3e-19 Score=129.60 Aligned_cols=82 Identities=35% Similarity=0.571 Sum_probs=75.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEc
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (272)
.++++|||+|||+++|+++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.|+
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 3578999999999999999999999999999999954 4678999999999999999999999999999999999999
Q ss_pred cCCCC
Q 024135 81 HGGRG 85 (272)
Q Consensus 81 ~~~~~ 85 (272)
+....
T Consensus 125 ~~~~~ 129 (135)
T 2lea_A 125 RYGRP 129 (135)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 86554
No 134
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.78 E-value=2.1e-19 Score=123.08 Aligned_cols=79 Identities=28% Similarity=0.440 Sum_probs=72.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEccCC
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~ 83 (272)
.+.++|||+|||+++++++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++...
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 91 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE--EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe--CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 467899999999999999999999999999877 566788999999999999999999999999999999999999754
Q ss_pred C
Q 024135 84 R 84 (272)
Q Consensus 84 ~ 84 (272)
.
T Consensus 92 ~ 92 (96)
T 1fjc_A 92 G 92 (96)
T ss_dssp C
T ss_pred C
Confidence 3
No 135
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=5.6e-19 Score=124.88 Aligned_cols=77 Identities=30% Similarity=0.484 Sum_probs=71.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEcc
Q 024135 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (272)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (272)
..++|||+|||.++++++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|.+|+ .|||..|.|+.|.|.++.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 357999999999999999999999999999999964 3678999999999999999999 899999999999999986
Q ss_pred C
Q 024135 82 G 82 (272)
Q Consensus 82 ~ 82 (272)
.
T Consensus 103 ~ 103 (114)
T 2cq4_A 103 A 103 (114)
T ss_dssp H
T ss_pred C
Confidence 4
No 136
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.78 E-value=1.4e-18 Score=130.12 Aligned_cols=82 Identities=35% Similarity=0.571 Sum_probs=75.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEc
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (272)
.+.++|||+|||+++++++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|..|+..|||..|.|+.|.|.++
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3478999999999999999999999999999999964 5788999999999999999999999999999999999999
Q ss_pred cCCCC
Q 024135 81 HGGRG 85 (272)
Q Consensus 81 ~~~~~ 85 (272)
.....
T Consensus 148 ~~~~~ 152 (158)
T 2kn4_A 148 RYGRP 152 (158)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 86543
No 137
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=6.2e-19 Score=122.12 Aligned_cols=83 Identities=23% Similarity=0.370 Sum_probs=72.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEccC
Q 024135 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (272)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~ 82 (272)
..++++|||+|||+++++++|+++|+.|+.|..+....++.++|||||+|.+.++|++|+..|||..|.|+.|.|.|++.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 91 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKP 91 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 35789999999999999999999999887555444445677889999999999999999999999999999999999976
Q ss_pred CCC
Q 024135 83 GRG 85 (272)
Q Consensus 83 ~~~ 85 (272)
...
T Consensus 92 ~~~ 94 (102)
T 2fc8_A 92 KGE 94 (102)
T ss_dssp CCS
T ss_pred CCC
Confidence 543
No 138
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3.8e-19 Score=123.66 Aligned_cols=81 Identities=33% Similarity=0.701 Sum_probs=74.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEc
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (272)
.++++|||+|||+++++++|+++|+.||.|..+.+.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 3568999999999999999999999999999999954 4677899999999999999999999999999999999999
Q ss_pred cCCC
Q 024135 81 HGGR 84 (272)
Q Consensus 81 ~~~~ 84 (272)
....
T Consensus 86 ~~~~ 89 (104)
T 1p1t_A 86 ASEK 89 (104)
T ss_dssp TCTT
T ss_pred CCcc
Confidence 7543
No 139
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=2e-19 Score=123.65 Aligned_cols=79 Identities=24% Similarity=0.352 Sum_probs=71.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEee---cCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEc
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLK---IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~---~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (272)
...++|||+|||+++++++|+++|+.||.|..+.+. .++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 456889999999999999999999999999766553 35677899999999999999999999999999999999998
Q ss_pred cC
Q 024135 81 HG 82 (272)
Q Consensus 81 ~~ 82 (272)
..
T Consensus 93 ~~ 94 (98)
T 2cqp_A 93 SG 94 (98)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 140
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.78 E-value=1.6e-19 Score=123.46 Aligned_cols=78 Identities=22% Similarity=0.303 Sum_probs=69.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEee---cCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEc
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLK---IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~---~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (272)
.++++|||+|||+++++++|+++|+.||.|..+.+. .++.++|||||+|.++++|++|+..|||..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 356899999999999999999999999999876664 34677899999999999999999999999999999999987
Q ss_pred c
Q 024135 81 H 81 (272)
Q Consensus 81 ~ 81 (272)
.
T Consensus 93 ~ 93 (95)
T 2ek1_A 93 S 93 (95)
T ss_dssp C
T ss_pred c
Confidence 5
No 141
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.8e-18 Score=114.33 Aligned_cols=75 Identities=27% Similarity=0.349 Sum_probs=67.2
Q ss_pred CCCCe-EEEcCCCCCCCHHH----HHHHhhcc-CCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEE
Q 024135 4 RASRT-LYVGNLPGDIRERE----VEDLFYKY-GPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (272)
Q Consensus 4 ~~~~~-l~v~nL~~~~t~~~----l~~~F~~~-G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v 77 (272)
.|+.| |||+|||.++++++ |.++|++| |+|.+| + .|+|||.|.+.++|..|+..|||..|.|++|.|
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V----t---gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v 78 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI----T---GCSAILRFINQDSAERAQKRMENEDVFGNRIIV 78 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC----C---TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE----e---cCEEEEEECCHHHHHHHHHHhcCCccCCceEEE
Confidence 46777 99999999999988 55899999 599988 2 299999999999999999999999999999999
Q ss_pred EEccCCCC
Q 024135 78 ELAHGGRG 85 (272)
Q Consensus 78 ~~~~~~~~ 85 (272)
.+++....
T Consensus 79 ~~A~~~sd 86 (96)
T 2diu_A 79 SFTPKNRE 86 (96)
T ss_dssp ESSCCSCC
T ss_pred EecCCCcc
Confidence 99986543
No 142
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.78 E-value=3.6e-19 Score=131.03 Aligned_cols=82 Identities=26% Similarity=0.474 Sum_probs=74.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeE--------EEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCce
Q 024135 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAH--------IDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHR 74 (272)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~--------v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~ 74 (272)
..++++|||+|||+++|+++|.++|+.||.|.. +.+..++.++|||||+|.+.++|.+|+..|||..|.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 357899999999999999999999999998875 555667889999999999999999999999999999999
Q ss_pred EEEEEccCCC
Q 024135 75 LRVELAHGGR 84 (272)
Q Consensus 75 i~v~~~~~~~ 84 (272)
|.|.+++...
T Consensus 122 l~V~~a~~~~ 131 (143)
T 3egn_A 122 MVVQFARSAR 131 (143)
T ss_dssp CEEEECCCSC
T ss_pred EEEEECCCCC
Confidence 9999997644
No 143
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.7e-18 Score=122.74 Aligned_cols=80 Identities=19% Similarity=0.377 Sum_probs=73.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecC---CCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEcc
Q 024135 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (272)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~---~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (272)
+.++|||+|||+++|+++|+++|..||.|..|.|..+ +.++|||||+|.+.++|.+|+.. |+..|.|+.|.|.++.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 3589999999999999999999999999999999653 67899999999999999999996 9999999999999997
Q ss_pred CCCC
Q 024135 82 GGRG 85 (272)
Q Consensus 82 ~~~~ 85 (272)
....
T Consensus 105 ~~~~ 108 (116)
T 1x4b_A 105 AREE 108 (116)
T ss_dssp SCCC
T ss_pred CCcc
Confidence 6543
No 144
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.4e-18 Score=117.68 Aligned_cols=79 Identities=18% Similarity=0.322 Sum_probs=72.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec--CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEc
Q 024135 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (272)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (272)
..+.++|||+|||+++++++|+++|+.| .|..|.|.. ++.++|||||+|.+.++|.+|+. |||..|.|+.|.|.++
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 3567999999999999999999999999 999999965 46678999999999999999999 9999999999999999
Q ss_pred cCC
Q 024135 81 HGG 83 (272)
Q Consensus 81 ~~~ 83 (272)
...
T Consensus 85 ~~~ 87 (91)
T 2dgw_A 85 KSG 87 (91)
T ss_dssp SSC
T ss_pred CcC
Confidence 754
No 145
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.78 E-value=1.2e-18 Score=127.83 Aligned_cols=78 Identities=35% Similarity=0.636 Sum_probs=72.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEE
Q 024135 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (272)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~ 79 (272)
..+.++|||+|||+++++++|+++|+.||+|..+.+.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.+
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 35789999999999999999999999999999999954 467899999999999999999999999999999999987
Q ss_pred c
Q 024135 80 A 80 (272)
Q Consensus 80 ~ 80 (272)
|
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 5
No 146
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=3.7e-19 Score=116.68 Aligned_cols=73 Identities=15% Similarity=0.393 Sum_probs=68.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEc
Q 024135 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (272)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (272)
++|||+|||+++++++|+++|++||+|..+.+.. ++.++|||||+|.+.++|.+|+..++ ..+.|+.|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 5899999999999999999999999999999964 46789999999999999999999888 9999999999987
No 147
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.78 E-value=6.9e-19 Score=132.65 Aligned_cols=81 Identities=26% Similarity=0.466 Sum_probs=74.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEc
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (272)
.++++|||+|||+.+++++|.++|+.||.|..|.|.. ++.++|||||+|.+.++|.+||..|||..|.|+.|.|.|+
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 5677899999999999999999999999999999964 5667899999999999999999999999999999999999
Q ss_pred cCCC
Q 024135 81 HGGR 84 (272)
Q Consensus 81 ~~~~ 84 (272)
....
T Consensus 150 ~~~~ 153 (165)
T 1rk8_A 150 FVKG 153 (165)
T ss_dssp EECC
T ss_pred cCCC
Confidence 7644
No 148
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.77 E-value=6.3e-19 Score=118.58 Aligned_cols=77 Identities=32% Similarity=0.429 Sum_probs=71.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEccC
Q 024135 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (272)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~ 82 (272)
++.+++|||+|||+++++++|+++|++| +|..+.+. .++|||||+|.+.++|.+|+..|||..+.|+.|.|.++..
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~---~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 2 SSGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD---RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE---GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe---CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 4678999999999999999999999999 99999885 6789999999999999999999999999999999999864
Q ss_pred C
Q 024135 83 G 83 (272)
Q Consensus 83 ~ 83 (272)
.
T Consensus 78 ~ 78 (88)
T 1wg1_A 78 D 78 (88)
T ss_dssp C
T ss_pred C
Confidence 3
No 149
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.77 E-value=1.8e-19 Score=121.88 Aligned_cols=77 Identities=34% Similarity=0.618 Sum_probs=69.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecC---CCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEccCC
Q 024135 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (272)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~---~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~ 83 (272)
++|||+|||+++++++|+++|+.||+|..+.+..+ +.++|||||+|.+.+ |.+|+..|||..|.|+.|.|.++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999653 678999999999999 99999999999999999999999764
Q ss_pred C
Q 024135 84 R 84 (272)
Q Consensus 84 ~ 84 (272)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 150
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.77 E-value=1.5e-18 Score=124.53 Aligned_cols=79 Identities=28% Similarity=0.501 Sum_probs=72.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEcc
Q 024135 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (272)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (272)
+.++|||+|||.++|+++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+ .|||..|.|+.|.|.+++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 357999999999999999999999999999999953 5788999999999999999999 699999999999999997
Q ss_pred CCC
Q 024135 82 GGR 84 (272)
Q Consensus 82 ~~~ 84 (272)
...
T Consensus 114 ~~~ 116 (124)
T 2jwn_A 114 TNM 116 (124)
T ss_dssp CCC
T ss_pred CCC
Confidence 544
No 151
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.77 E-value=1.6e-18 Score=122.60 Aligned_cols=76 Identities=25% Similarity=0.360 Sum_probs=66.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCce-----EEEE
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHR-----LRVE 78 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~-----i~v~ 78 (272)
+..++|||+|||+++|+++|+++|++||+|..|.|..+ |||||+|.+.++|++||..|||..|.|+. |.|.
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~ 89 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 89 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT----SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC----CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEec
Confidence 45689999999999999999999999999999999755 89999999999999999999999999998 7777
Q ss_pred EccCC
Q 024135 79 LAHGG 83 (272)
Q Consensus 79 ~~~~~ 83 (272)
.+...
T Consensus 90 ~~~~~ 94 (115)
T 3beg_B 90 VDGPR 94 (115)
T ss_dssp ECC--
T ss_pred cCCCC
Confidence 76543
No 152
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.77 E-value=1.5e-18 Score=128.78 Aligned_cols=78 Identities=45% Similarity=0.745 Sum_probs=73.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEccCC
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~ 83 (272)
.+.++|||+|||+++|+++|+++|+.||.|..|.+..+ ++|||||+|.+.++|..|+..|||..|.|+.|.|.|+.+.
T Consensus 71 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 71 PLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN--PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp TTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS--SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC--CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 46789999999999999999999999999999999765 6899999999999999999999999999999999999754
No 153
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4.3e-18 Score=116.67 Aligned_cols=76 Identities=26% Similarity=0.471 Sum_probs=70.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEccCC
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~ 83 (272)
.++++|||+|| ++|+++|+++|+.||+|..|.|. .++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+...
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~---~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~ 87 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD---PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 87 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE---TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec---CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCC
Confidence 47789999996 99999999999999999999985 56899999999999999999999999999999999999765
Q ss_pred C
Q 024135 84 R 84 (272)
Q Consensus 84 ~ 84 (272)
.
T Consensus 88 ~ 88 (97)
T 1x5p_A 88 P 88 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 154
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3.3e-18 Score=118.74 Aligned_cols=79 Identities=18% Similarity=0.257 Sum_probs=71.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeE-EEeec--CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEc
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAH-IDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~-v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (272)
.+.++|||+|||+++|+++|+++|..||.|.. |.|.. ++.++|||||+|.++++|++|+.. |+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 46789999999999999999999999999987 77754 577899999999999999999996 999999999999988
Q ss_pred cCC
Q 024135 81 HGG 83 (272)
Q Consensus 81 ~~~ 83 (272)
...
T Consensus 92 ~~~ 94 (104)
T 1wg5_A 92 SRA 94 (104)
T ss_dssp CTT
T ss_pred CHH
Confidence 643
No 155
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.1e-18 Score=123.23 Aligned_cols=78 Identities=18% Similarity=0.190 Sum_probs=71.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCe-eEEEeec--CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEc
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPI-AHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v-~~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (272)
.+.++|||+|||+++|+++|+++|+.||.| ..|.|.. ++.++|||||+|.+.++|.+|+.. |+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVV 91 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEEC
Confidence 567899999999999999999999999999 7788744 577899999999999999999995 999999999999998
Q ss_pred cC
Q 024135 81 HG 82 (272)
Q Consensus 81 ~~ 82 (272)
..
T Consensus 92 ~~ 93 (114)
T 2cpy_A 92 TL 93 (114)
T ss_dssp CH
T ss_pred CH
Confidence 64
No 156
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.7e-18 Score=122.36 Aligned_cols=79 Identities=20% Similarity=0.360 Sum_probs=72.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec--CCCCCceEEEEecChHHHHHHHHhcCCccc--------CCc
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDF--------DGH 73 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~g~~~--------~g~ 73 (272)
.+.++|||+|||+++++++|+++|+.||.|..+.|.. ++.++|||||+|.+.++|.+|+..|||..| .++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 4679999999999999999999999999999999955 466789999999999999999999999999 578
Q ss_pred eEEEEEccC
Q 024135 74 RLRVELAHG 82 (272)
Q Consensus 74 ~i~v~~~~~ 82 (272)
+|.|.|+.+
T Consensus 103 ~l~v~~a~p 111 (114)
T 1x5o_A 103 PLLCKFSGP 111 (114)
T ss_dssp CBEEEECCC
T ss_pred ceeEEccCC
Confidence 899999874
No 157
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=3.6e-18 Score=116.34 Aligned_cols=78 Identities=22% Similarity=0.490 Sum_probs=67.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEccCC
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~ 83 (272)
...++|||+|||+++|+++|+++|+.||.|..|.+... ..+ ||||+|.+.++|.+|+. |||..|.|+.|.|.++...
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~-~g~-~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~ 82 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKD-KGV-FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQK 82 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSS-SCC-EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCC-CCc-EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcC
Confidence 46789999999999999999999999999999833221 122 99999999999999999 9999999999999988654
Q ss_pred C
Q 024135 84 R 84 (272)
Q Consensus 84 ~ 84 (272)
.
T Consensus 83 ~ 83 (94)
T 2e5g_A 83 E 83 (94)
T ss_dssp C
T ss_pred C
Confidence 3
No 158
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=2e-17 Score=115.58 Aligned_cols=82 Identities=55% Similarity=0.961 Sum_probs=70.5
Q ss_pred CCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCccccccee-eeEEE
Q 024135 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS-RAYVR 181 (272)
Q Consensus 103 ~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~-~~~~~ 181 (272)
+......+|||+|||.++++++|+++|.+||.|..+.+..+ +||||+|.+.++|+.|++.||+..+.|+.. ...|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~ 86 (108)
T 1x4c_A 10 PSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 86 (108)
T ss_dssp CCCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT---TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC---CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEE
Confidence 34456789999999999999999999999999999999887 799999999999999999999999998332 24566
Q ss_pred eecccc
Q 024135 182 VREYDH 187 (272)
Q Consensus 182 ~~~~~~ 187 (272)
|....+
T Consensus 87 V~~a~~ 92 (108)
T 1x4c_A 87 VKVDGP 92 (108)
T ss_dssp EEESSC
T ss_pred EEeCCC
Confidence 665544
No 159
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.76 E-value=8.7e-19 Score=114.25 Aligned_cols=72 Identities=19% Similarity=0.496 Sum_probs=66.8
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEc
Q 024135 8 TLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (272)
Q Consensus 8 ~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (272)
+|||+|||+++++++|+++|+.||+|..+.+.. ++.++|||||+|.+.++|.+|+. +++..+.|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 699999999999999999999999999999854 36789999999999999999999 5999999999999875
No 160
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.76 E-value=3.3e-19 Score=123.24 Aligned_cols=80 Identities=20% Similarity=0.328 Sum_probs=70.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEe--ecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEcc
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDL--KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~--~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (272)
.+.++|||+|||+++|+++|+++|+.||.|....+ ..++.++|||||+|.+.++|.+|+. |||..|.|+.|.|.++.
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 46789999999999999999999999998877222 2347889999999999999999999 99999999999999997
Q ss_pred CCC
Q 024135 82 GGR 84 (272)
Q Consensus 82 ~~~ 84 (272)
...
T Consensus 94 ~~~ 96 (101)
T 1fj7_A 94 GRD 96 (101)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 161
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.76 E-value=1.2e-18 Score=123.67 Aligned_cols=77 Identities=21% Similarity=0.295 Sum_probs=71.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCC---eeEEEeec--CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEE
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGP---IAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~---v~~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~ 78 (272)
.+.++|||+|||+++|+++|+++|+.||. |..|.|.. .+.++|||||+|.+.++|++|+. ||+..|.|+.|.|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 45789999999999999999999999999 88888854 47788999999999999999999 99999999999999
Q ss_pred Ecc
Q 024135 79 LAH 81 (272)
Q Consensus 79 ~~~ 81 (272)
++.
T Consensus 94 ~a~ 96 (118)
T 2db1_A 94 KSH 96 (118)
T ss_dssp EEC
T ss_pred ECC
Confidence 985
No 162
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=4e-18 Score=116.66 Aligned_cols=79 Identities=16% Similarity=0.370 Sum_probs=70.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEE-eecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEccC
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHID-LKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~-~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~ 82 (272)
..+++|||+|||+++++++|+++|+.||.|..+. +..+. ..+.|||+|.+.++|..|+..|||..|.|+.|.|.++.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~-~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDS-ETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSS-SSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCC-CCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 3578999999999999999999999999999994 65432 345599999999999999999999999999999999976
Q ss_pred C
Q 024135 83 G 83 (272)
Q Consensus 83 ~ 83 (272)
.
T Consensus 92 ~ 92 (96)
T 2e44_A 92 E 92 (96)
T ss_dssp C
T ss_pred c
Confidence 4
No 163
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.1e-18 Score=119.10 Aligned_cols=79 Identities=22% Similarity=0.337 Sum_probs=70.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec--CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEcc
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (272)
.+.++|||+|||+++|+++|+++|+.||.| .|.|.. +++++|||||+|.++++|++||. +|+..|.|+.|.|.++.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 567899999999999999999999999954 888854 56788999999999999999996 89999999999999886
Q ss_pred CCC
Q 024135 82 GGR 84 (272)
Q Consensus 82 ~~~ 84 (272)
...
T Consensus 91 ~~~ 93 (102)
T 1wez_A 91 TAG 93 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 164
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.76 E-value=2.4e-18 Score=124.54 Aligned_cols=77 Identities=19% Similarity=0.261 Sum_probs=70.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCC---eeEEEeec--CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEE
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGP---IAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~---v~~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~ 78 (272)
.+.++|||+|||+++|+++|+++|+.||. |..|.|.. .+.++|||||+|.+.++|++|+. ||+..|.|+.|.|.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVF 120 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEE
Confidence 45789999999999999999999999999 88888854 37788999999999999999999 99999999999999
Q ss_pred Ecc
Q 024135 79 LAH 81 (272)
Q Consensus 79 ~~~ 81 (272)
++.
T Consensus 121 ~a~ 123 (136)
T 2hgl_A 121 KSH 123 (136)
T ss_dssp ECC
T ss_pred ECC
Confidence 874
No 165
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.76 E-value=3.2e-18 Score=130.05 Aligned_cols=80 Identities=25% Similarity=0.446 Sum_probs=74.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec--CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEcc
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (272)
.++++|||+|||+.+++++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.|+.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 4578999999999999999999999999999999965 47788999999999999999999999999999999999997
Q ss_pred CC
Q 024135 82 GG 83 (272)
Q Consensus 82 ~~ 83 (272)
..
T Consensus 166 ~~ 167 (177)
T 2f3j_A 166 SQ 167 (177)
T ss_dssp SG
T ss_pred CC
Confidence 53
No 166
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.75 E-value=6.6e-18 Score=124.74 Aligned_cols=77 Identities=18% Similarity=0.224 Sum_probs=69.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCC--ceEEEEEccCCC
Q 024135 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG--HRLRVELAHGGR 84 (272)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g--~~i~v~~~~~~~ 84 (272)
.+|||+||++.+|+++|+++|++||+|..|.|.. ..++|||||+|.+.++|++|+..|||..|.| +.|.|+|++...
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~-k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFT-KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 125 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEE-SSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSS
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEe-CCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCc
Confidence 4578999999999999999999999999999853 2357899999999999999999999999965 999999998653
No 167
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.7e-18 Score=123.17 Aligned_cols=77 Identities=22% Similarity=0.308 Sum_probs=69.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEE-Ee--ecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEc
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHI-DL--KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v-~~--~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (272)
.+.++|||+|||+++|+++|+++|+.||.|..+ .+ ..++.++|||||+|.+.++|.+||. |||..|.|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 456899999999999999999999999998763 33 3467889999999999999999999 9999999999999998
Q ss_pred c
Q 024135 81 H 81 (272)
Q Consensus 81 ~ 81 (272)
.
T Consensus 102 ~ 102 (124)
T 1wel_A 102 T 102 (124)
T ss_dssp C
T ss_pred C
Confidence 5
No 168
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.74 E-value=7.7e-18 Score=119.88 Aligned_cols=75 Identities=19% Similarity=0.299 Sum_probs=67.8
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCce-EEEEecChHHHHHHHHhcCCcccCC--ceEEEEEccCCC
Q 024135 8 TLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGY-AFVEFEEARDAEDAIRGRDGYDFDG--HRLRVELAHGGR 84 (272)
Q Consensus 8 ~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~-afV~f~~~~~a~~a~~~l~g~~~~g--~~i~v~~~~~~~ 84 (272)
.|||+||++.+|+++|.++|++||.|..|.+.. +.+|| |||+|.+.++|..|+..|||..|.| +.|+|+|++...
T Consensus 30 ~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~--~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~ 107 (130)
T 3zzy_A 30 RIIVENLFYPVTLDVLHQIFSKFGTVLKIITFT--KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 107 (130)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEE--ETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSS
T ss_pred EEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEc--CCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCc
Confidence 356999999999999999999999999998864 23677 9999999999999999999999988 899999998653
No 169
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.74 E-value=2.9e-18 Score=135.69 Aligned_cols=77 Identities=17% Similarity=0.241 Sum_probs=71.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccC--CeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEE
Q 024135 5 ASRTLYVGNLPGDIREREVEDLFYKYG--PIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (272)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G--~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~ 79 (272)
..++|||+||++++|+++|+++|+.|| .|..|.|+. ++.++|||||+|.+.++|.+||..||+..|.|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 999999954 567899999999999999999999999999999999999
Q ss_pred cc
Q 024135 80 AH 81 (272)
Q Consensus 80 ~~ 81 (272)
+.
T Consensus 147 a~ 148 (229)
T 3q2s_C 147 VN 148 (229)
T ss_dssp CC
T ss_pred CC
Confidence 85
No 170
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=6.9e-18 Score=117.53 Aligned_cols=74 Identities=22% Similarity=0.272 Sum_probs=68.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec--CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEcc
Q 024135 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (272)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (272)
.++|||+|||+++|+++|+++|+.| .|..|.|.. +++++|||||+|.++++|++|+. ||+..|.|+.|.|..+.
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALK-RNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHH-TTTEEETTEEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEECC
Confidence 4689999999999999999999999 899999954 47789999999999999999995 99999999999998875
No 171
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.74 E-value=5.7e-18 Score=113.66 Aligned_cols=73 Identities=32% Similarity=0.622 Sum_probs=67.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcc----C-------CeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccC
Q 024135 3 SRASRTLYVGNLPGDIREREVEDLFYKY----G-------PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFD 71 (272)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~----G-------~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~ 71 (272)
++++++|||+|||+++++++|+++|+.| | .|..+.+..+ +|||||+|.+.++|.+|+ .|||..|.
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~---kg~afV~f~~~~~a~~A~-~l~g~~~~ 78 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD---KNFAFLEFRSVDETTQAM-AFDGIIFQ 78 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS---SSEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC---CcEEEEEcCCHHHHHHHH-hcCCCEEC
Confidence 4678999999999999999999999999 8 8999998743 799999999999999999 89999999
Q ss_pred CceEEEEE
Q 024135 72 GHRLRVEL 79 (272)
Q Consensus 72 g~~i~v~~ 79 (272)
|+.|.|+.
T Consensus 79 g~~l~V~r 86 (87)
T 2hzc_A 79 GQSLKIRR 86 (87)
T ss_dssp TEECEEEC
T ss_pred CeEEEEeC
Confidence 99999874
No 172
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.74 E-value=1.1e-17 Score=112.55 Aligned_cols=75 Identities=23% Similarity=0.460 Sum_probs=62.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcc--cCCceEEEEEc
Q 024135 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYD--FDGHRLRVELA 80 (272)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~--~~g~~i~v~~~ 80 (272)
..+.++|||+|||+++|+++|+++|++||.|.++.|..+ ++|||||+|.+.++|.+ +++.. +.|+.|.|.++
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~--srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP--FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNA 81 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS--CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC--CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEc
Confidence 357899999999999999999999999999999999764 78999999999999983 45544 45999999998
Q ss_pred cCC
Q 024135 81 HGG 83 (272)
Q Consensus 81 ~~~ 83 (272)
.+.
T Consensus 82 ~~k 84 (89)
T 3d2w_A 82 EPK 84 (89)
T ss_dssp C--
T ss_pred CCC
Confidence 753
No 173
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.74 E-value=2.4e-18 Score=120.06 Aligned_cols=78 Identities=15% Similarity=0.183 Sum_probs=71.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCC---eeEEEeec--CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEE
Q 024135 3 SRASRTLYVGNLPGDIREREVEDLFYKYGP---IAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (272)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~---v~~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v 77 (272)
....++|||+|||+++|+++|+++|+.||. |..|.|.. .+.++|||||+|.+.++|.+|+. ||+..|.|+.|.|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEV 86 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEE
Confidence 356789999999999999999999999998 88999854 37789999999999999999999 9999999999999
Q ss_pred EEcc
Q 024135 78 ELAH 81 (272)
Q Consensus 78 ~~~~ 81 (272)
.++.
T Consensus 87 ~~a~ 90 (107)
T 2lmi_A 87 YEIN 90 (107)
T ss_dssp EECC
T ss_pred EECC
Confidence 9875
No 174
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.74 E-value=1.6e-17 Score=117.83 Aligned_cols=77 Identities=25% Similarity=0.251 Sum_probs=68.2
Q ss_pred CCCe--EEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCce-EEEEecChHHHHHHHHhcCCcccCC--ceEEEEE
Q 024135 5 ASRT--LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGY-AFVEFEEARDAEDAIRGRDGYDFDG--HRLRVEL 79 (272)
Q Consensus 5 ~~~~--l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~-afV~f~~~~~a~~a~~~l~g~~~~g--~~i~v~~ 79 (272)
|+++ |||+||++.+|+++|.++|++||.|..|.|... .|| |||+|.+.++|..|+..|||..|.| +.|.|.+
T Consensus 22 ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~---~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 22 GNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR---NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEY 98 (124)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES---SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEEC
T ss_pred CCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEE
Confidence 4555 568999999999999999999999999998542 386 9999999999999999999999987 6899999
Q ss_pred ccCCC
Q 024135 80 AHGGR 84 (272)
Q Consensus 80 ~~~~~ 84 (272)
++...
T Consensus 99 Ak~~~ 103 (124)
T 2e5i_A 99 ARPTR 103 (124)
T ss_dssp CSCSC
T ss_pred ecCCc
Confidence 98654
No 175
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=6.9e-18 Score=113.48 Aligned_cols=78 Identities=24% Similarity=0.439 Sum_probs=66.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEccC
Q 024135 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (272)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~ 82 (272)
+.++++|||+|||+++++++|+++|+.||+|..+.|..+ ++|||||+|.+.++|++|+.. +..+.|..|.|.++..
T Consensus 2 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 2 SSGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP--FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEP 77 (88)
T ss_dssp CSCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS--CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC--CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCC
Confidence 457899999999999999999999999999999999754 789999999999999764331 3455899999999876
Q ss_pred CC
Q 024135 83 GR 84 (272)
Q Consensus 83 ~~ 84 (272)
..
T Consensus 78 ~~ 79 (88)
T 1wf0_A 78 KH 79 (88)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 176
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.73 E-value=1.8e-17 Score=124.87 Aligned_cols=134 Identities=13% Similarity=0.107 Sum_probs=69.2
Q ss_pred EEecChHHHHHHHHhcCCcccC--CceEEEEEccCCCCCCCCCCC-CCCCCCCCCCCCCCccceEEEcCCCCCCCHHHHH
Q 024135 50 VEFEEARDAEDAIRGRDGYDFD--GHRLRVELAHGGRGRSSSDRH-SSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLK 126 (272)
Q Consensus 50 V~f~~~~~a~~a~~~l~g~~~~--g~~i~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~ 126 (272)
.+|.+.++|..|+..|++.... |+.+.+.++............ .......+.+....+.++|||+|||..+++++|.
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 7899999999999999987765 666666654322110000000 0000011222334567899999999999999999
Q ss_pred HHHHhcCCeeEEEEEecCC----CCeEEEEeCCHHHHHHHHHHhcCcccccceeeeEEEeecccc
Q 024135 127 DHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYDH 187 (272)
Q Consensus 127 ~~f~~~G~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~~~~~~ 187 (272)
++|.+||.|..|.+..+.. .|||||+|.+.++|..|+..||+..+.|+ .|.|.+...
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~----~l~V~~a~~ 151 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQ----TIQVDWCFV 151 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTE----ECEEEESEE
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCE----EEEEEEecC
Confidence 9999999999999998854 35999999999999999999999999994 455554433
No 177
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.73 E-value=2.3e-17 Score=114.10 Aligned_cols=81 Identities=20% Similarity=0.254 Sum_probs=71.7
Q ss_pred CCCCCCeEEEcCCCC-----CCCHHHHHHHhhccCCeeEEEeecC----CCCCceEEEEecChHHHHHHHHhcCCcccCC
Q 024135 2 SSRASRTLYVGNLPG-----DIREREVEDLFYKYGPIAHIDLKIP----PRPPGYAFVEFEEARDAEDAIRGRDGYDFDG 72 (272)
Q Consensus 2 ~~~~~~~l~v~nL~~-----~~t~~~l~~~F~~~G~v~~v~~~~~----~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g 72 (272)
+..++++|+|.||.. +-++++|+++|++||.|.+|.|..+ +.++|||||+|.+.++|.+|+..|||..|.|
T Consensus 4 ~~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~G 83 (105)
T 2pe8_A 4 GKCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGG 83 (105)
T ss_dssp GGSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 457899999999963 2378999999999999999999653 4679999999999999999999999999999
Q ss_pred ceEEEEEccC
Q 024135 73 HRLRVELAHG 82 (272)
Q Consensus 73 ~~i~v~~~~~ 82 (272)
+.|.|.++..
T Consensus 84 r~i~v~~a~~ 93 (105)
T 2pe8_A 84 RVVKACFYNL 93 (105)
T ss_dssp EECEEEECCH
T ss_pred cEEEEEEcCH
Confidence 9999999853
No 178
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.57 E-value=3.2e-19 Score=126.53 Aligned_cols=82 Identities=28% Similarity=0.430 Sum_probs=74.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeE--------EEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccC
Q 024135 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAH--------IDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFD 71 (272)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~--------v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~ 71 (272)
..++++|||+|||+++++++|+++|+.||.|.. |.|.. ++.++|||||+|.+.++|.+|+..|||..|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 457899999999999999999999999999998 77754 4678999999999999999999999999999
Q ss_pred CceEEEEEccCCC
Q 024135 72 GHRLRVELAHGGR 84 (272)
Q Consensus 72 g~~i~v~~~~~~~ 84 (272)
|+.|.|.++....
T Consensus 84 g~~l~V~~a~~~~ 96 (116)
T 2lcw_A 84 GNPIKVSFATRRA 96 (116)
Confidence 9999999997644
No 179
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.72 E-value=4.1e-18 Score=123.70 Aligned_cols=79 Identities=19% Similarity=0.281 Sum_probs=70.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec--CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEcc
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (272)
...++|||+|||+++|+++|+++|+.|| |+.|.|.. +++++|||||+|.+.++|++|| .+|+..|.|+.|.|.++.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNS 121 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECC
Confidence 4568999999999999999999999999 67888854 4778999999999999999999 699999999999999886
Q ss_pred CCC
Q 024135 82 GGR 84 (272)
Q Consensus 82 ~~~ 84 (272)
...
T Consensus 122 ~~~ 124 (139)
T 2hgn_A 122 TTG 124 (139)
T ss_dssp CSC
T ss_pred CCC
Confidence 543
No 180
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.72 E-value=2.8e-17 Score=116.98 Aligned_cols=76 Identities=26% Similarity=0.471 Sum_probs=70.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEccCC
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~ 83 (272)
.++++|||+|| ++|+++|+++|+.||+|..|.+. .++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+...
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~ 111 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD---PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 111 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe---CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCC
Confidence 46799999996 69999999999999999999986 67899999999999999999999999999999999999764
Q ss_pred C
Q 024135 84 R 84 (272)
Q Consensus 84 ~ 84 (272)
.
T Consensus 112 ~ 112 (121)
T 2bz2_A 112 P 112 (121)
T ss_dssp C
T ss_pred C
Confidence 3
No 181
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=7.4e-18 Score=119.82 Aligned_cols=77 Identities=23% Similarity=0.227 Sum_probs=68.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCe----eEEEee--cCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEE
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPI----AHIDLK--IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v----~~v~~~--~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v 77 (272)
.+.++|||+|||+++|+++|+++|+.||.| ..|.|. .+++++|||||+|.+.++|++|+.. |+..|.|+.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 567899999999999999999999999975 577775 3577899999999999999999995 999999999999
Q ss_pred EEcc
Q 024135 78 ELAH 81 (272)
Q Consensus 78 ~~~~ 81 (272)
..+.
T Consensus 100 ~~a~ 103 (123)
T 2dha_A 100 FRST 103 (123)
T ss_dssp EEEC
T ss_pred EECC
Confidence 8763
No 182
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.71 E-value=1.8e-17 Score=118.08 Aligned_cols=76 Identities=21% Similarity=0.258 Sum_probs=68.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCee--EEEeec--CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEE
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIA--HIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~--~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~ 79 (272)
...++|||+|||+++|+++|+++|+.| .|. .|.|.. ++.++|||||+|.++++|++|+. +++..|.|+.|.|.+
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEE
Confidence 357899999999999999999999999 576 888854 47889999999999999999999 588999999999988
Q ss_pred cc
Q 024135 80 AH 81 (272)
Q Consensus 80 ~~ 81 (272)
+.
T Consensus 118 a~ 119 (126)
T 2hgm_A 118 SS 119 (126)
T ss_dssp EC
T ss_pred CC
Confidence 74
No 183
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.71 E-value=8.5e-18 Score=116.31 Aligned_cols=78 Identities=23% Similarity=0.498 Sum_probs=71.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec--CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEcc
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (272)
.++++|||+|||+++++++|+++|+.||.|..+.|.. ++.++|||||+|.+.++|++|+. ++..|.|+.|.|.++.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 3568999999999999999999999999999999965 46678999999999999999999 9999999999999986
Q ss_pred CC
Q 024135 82 GG 83 (272)
Q Consensus 82 ~~ 83 (272)
..
T Consensus 85 ~~ 86 (102)
T 2xs2_A 85 RK 86 (102)
T ss_dssp EC
T ss_pred cC
Confidence 43
No 184
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.71 E-value=9.3e-17 Score=110.15 Aligned_cols=76 Identities=21% Similarity=0.365 Sum_probs=67.8
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----CeEEEEeCCHHHHHHHHHHhcCcccccceeeeEEEe
Q 024135 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 182 (272)
Q Consensus 107 ~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~ 182 (272)
.+++|||+|||.++++++|.++|++||.|..+.+..++.. |||||+|.+.++|..|++.|||..+.| ..|.|
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g----r~l~V 93 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQS----KTIKV 93 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETT----EECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECC----EEEEE
Confidence 4578999999999999999999999999999999987653 599999999999999999999999999 55666
Q ss_pred eccc
Q 024135 183 REYD 186 (272)
Q Consensus 183 ~~~~ 186 (272)
...+
T Consensus 94 ~~Ak 97 (99)
T 4fxv_A 94 SYAR 97 (99)
T ss_dssp EECC
T ss_pred EEee
Confidence 5554
No 185
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=1.1e-16 Score=112.86 Aligned_cols=75 Identities=33% Similarity=0.545 Sum_probs=62.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecC------CCCCceEEEEecChHHHHHHHHhcCCcccCCceEE
Q 024135 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP------PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLR 76 (272)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~------~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~ 76 (272)
..++++|||+|||+++|+++|+++|++||+|. +.+..+ +.++|||||+|.+.++|++|+..|++ +.|+.|.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G~~~~ 81 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--EDGKLYL 81 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ETTEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cCCcEEE
Confidence 35789999999999999999999999999999 666432 57899999999999999999998832 5555555
Q ss_pred EEEc
Q 024135 77 VELA 80 (272)
Q Consensus 77 v~~~ 80 (272)
+..+
T Consensus 82 ~~~~ 85 (114)
T 2dnl_A 82 CVSS 85 (114)
T ss_dssp EECC
T ss_pred eccC
Confidence 5443
No 186
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.70 E-value=3.6e-17 Score=118.81 Aligned_cols=118 Identities=14% Similarity=0.074 Sum_probs=70.1
Q ss_pred ceEEEEecChHHHHHHHHhcCCcccCCceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCccceEEEcCCCCCCCHHHH
Q 024135 46 GYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDL 125 (272)
Q Consensus 46 g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l 125 (272)
.++|++|.++..+..|+..++|....|..- +.+ +...+...+..+|||+|||..+++++|
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~-------------------~~~~~~~~~~~~l~V~nLp~~~te~~L 64 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSY-------------------GRPPPDVEGMTSLKVDNLTYRTSPDTL 64 (135)
T ss_dssp -------------------------------CCS-------------------CCSCSSGGGCCCEEEECCCSSCHHHHH
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCCC-CCc-------------------CCCCCCCCCCCEEEEeCCCCCCCHHHH
Confidence 477888899999999999988866555421 111 111233455689999999999999999
Q ss_pred HHHHHhcCCeeEEEEEecC----CCCeEEEEeCCHHHHHHHHHHhcCcccccceeeeEEEeecccc
Q 024135 126 KDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYDH 187 (272)
Q Consensus 126 ~~~f~~~G~i~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~~~~~~ 187 (272)
+++|.+||.|..+.+..+. ..+||||+|.+.++|+.|++.||+..+.|+ .|.|...+.
T Consensus 65 ~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~----~l~V~~a~~ 126 (135)
T 2lea_A 65 RRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR----ELRVQMARY 126 (135)
T ss_dssp HHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSS----CCEEEECCC
T ss_pred HHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCE----EEEEEECCC
Confidence 9999999999999998764 356999999999999999999999999994 445554443
No 187
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.70 E-value=6.5e-17 Score=112.81 Aligned_cols=76 Identities=32% Similarity=0.582 Sum_probs=68.2
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHHhcC-CeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCcccccceeeeEEEeecc
Q 024135 107 SEYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREY 185 (272)
Q Consensus 107 ~~~~~~v~nl~~~~~~~~l~~~f~~~G-~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~~~~ 185 (272)
...+|||+|||+++++++|+++|.+|| .|..+.+......|||||+|.+.++|+.|++.|||.+++| ..|.|...
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~G----r~i~V~~a 102 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRG----SVITVERD 102 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETT----EEEEEEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECC----eEEEEEEC
Confidence 458999999999999999999999999 9999999766678899999999999999999999999999 55666554
Q ss_pred c
Q 024135 186 D 186 (272)
Q Consensus 186 ~ 186 (272)
.
T Consensus 103 ~ 103 (111)
T 2jvr_A 103 D 103 (111)
T ss_dssp C
T ss_pred C
Confidence 3
No 188
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.69 E-value=8.2e-17 Score=121.20 Aligned_cols=78 Identities=24% Similarity=0.475 Sum_probs=73.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEc
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (272)
.++++|||+|||+.+++++|.++|+.||.|..+.+.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+
T Consensus 85 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 164 (166)
T 3md3_A 85 DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 164 (166)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEec
Confidence 4678999999999999999999999999999999964 4677899999999999999999999999999999999998
Q ss_pred c
Q 024135 81 H 81 (272)
Q Consensus 81 ~ 81 (272)
+
T Consensus 165 ~ 165 (166)
T 3md3_A 165 A 165 (166)
T ss_dssp C
T ss_pred C
Confidence 5
No 189
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.69 E-value=9.1e-17 Score=126.33 Aligned_cols=82 Identities=28% Similarity=0.527 Sum_probs=75.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEc
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (272)
.+.++|||+|||.++|+++|+++|+.||.|..+.+.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 3568999999999999999999999999999999964 4677899999999999999999999999999999999999
Q ss_pred cCCCC
Q 024135 81 HGGRG 85 (272)
Q Consensus 81 ~~~~~ 85 (272)
.....
T Consensus 203 ~~~~~ 207 (216)
T 2qfj_A 203 VTPPM 207 (216)
T ss_dssp SSCSS
T ss_pred cCCCC
Confidence 86543
No 190
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.69 E-value=5.9e-17 Score=127.25 Aligned_cols=78 Identities=24% Similarity=0.406 Sum_probs=72.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec-CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEccC
Q 024135 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI-PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (272)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~-~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~ 82 (272)
..++|||+|||+.+|+++|+++|+.||.|..+.|.. .+.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++..
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 457899999999999999999999999999999954 345689999999999999999999999999999999999864
No 191
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.69 E-value=6.2e-17 Score=113.11 Aligned_cols=76 Identities=22% Similarity=0.345 Sum_probs=67.0
Q ss_pred CeEEEcCC----CCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecC----hHH----HHHHHH--hcCCcc
Q 024135 7 RTLYVGNL----PGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEE----ARD----AEDAIR--GRDGYD 69 (272)
Q Consensus 7 ~~l~v~nL----~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~----~~~----a~~a~~--~l~g~~ 69 (272)
+.|||+|| |+.+++++|+++|+.||+|.++.+.. ++.++|||||+|.+ +++ |.+|+. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 78999999 99999999999999999999999955 57789999999996 433 788888 789999
Q ss_pred cCCceEEEEEccC
Q 024135 70 FDGHRLRVELAHG 82 (272)
Q Consensus 70 ~~g~~i~v~~~~~ 82 (272)
|.|+.|.|.+...
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999998754
No 192
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.5e-16 Score=110.67 Aligned_cols=80 Identities=24% Similarity=0.389 Sum_probs=70.3
Q ss_pred CCCCeEEEcCCCCCCC-----------HHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCC
Q 024135 4 RASRTLYVGNLPGDIR-----------EREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG 72 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t-----------~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g 72 (272)
.++++|+|.||....+ +++|+++|++||.|..|.| .+..++|||||+|.+.++|.+|+..|||..|.|
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 91 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDRHPDGVASVSFRDPEEADYCIQTLDGRWFGG 91 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETTCTTCEEEEECSCHHHHHHHHHHSTTCEETT
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecCCCCEEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 5789999999954432 5799999999999999976 455689999999999999999999999999999
Q ss_pred ceEEEEEccCCC
Q 024135 73 HRLRVELAHGGR 84 (272)
Q Consensus 73 ~~i~v~~~~~~~ 84 (272)
+.|.|.++.+..
T Consensus 92 r~l~v~~a~~~~ 103 (112)
T 2dit_A 92 RQITAQAWDGTT 103 (112)
T ss_dssp EECEEEECCSCC
T ss_pred cEEEEEEeCCCC
Confidence 999999987543
No 193
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.68 E-value=7.8e-16 Score=108.79 Aligned_cols=77 Identities=17% Similarity=0.283 Sum_probs=67.5
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecC---CCCeEEEEeCCHHHHHHHHHHhcCcccccceeeeEEEe
Q 024135 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG---SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 182 (272)
Q Consensus 106 ~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~---~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~ 182 (272)
....+|||+|||..+++++|+++|++||.|..+.+..+. ..+||||+|.+.++|+.|++.||+..+.|+ .|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~----~l~V 80 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGK----AIKV 80 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSS----BCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCE----EEEE
Confidence 345799999999999999999999999999999999876 346999999999999999999999999994 4455
Q ss_pred eccc
Q 024135 183 REYD 186 (272)
Q Consensus 183 ~~~~ 186 (272)
....
T Consensus 81 ~~a~ 84 (116)
T 2fy1_A 81 EQAK 84 (116)
T ss_dssp EECC
T ss_pred EECC
Confidence 5443
No 194
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.68 E-value=6.4e-17 Score=127.41 Aligned_cols=77 Identities=27% Similarity=0.429 Sum_probs=70.7
Q ss_pred CCCCeEEEcCCCCCC---------CHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCccc----
Q 024135 4 RASRTLYVGNLPGDI---------REREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDF---- 70 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~---------t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~---- 70 (272)
..+++|||+||+..+ ++++|+++|++||+|.+|.|.. ++|||||+|.+.++|+.|+..|+|..|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~---~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~ 208 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE---SKNCGFVKFKYQANAEFAKEAMSNQTLLLPS 208 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG---GGTEEEEEESSHHHHHHHHHHHTTCCCCCTT
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC---CCCEEEEEeCCHHHHHHHHHHhCCCEEeccc
Confidence 578999999999998 7999999999999999999974 489999999999999999999999999
Q ss_pred --------CCceEEEEEccCC
Q 024135 71 --------DGHRLRVELAHGG 83 (272)
Q Consensus 71 --------~g~~i~v~~~~~~ 83 (272)
.|+.|.|.|+...
T Consensus 209 ~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 209 DKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp STTGGGGGGSCCCEEEECC--
T ss_pred cccccccCCCCEEEEEEccCC
Confidence 8999999999754
No 195
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=3.9e-16 Score=107.05 Aligned_cols=77 Identities=8% Similarity=0.123 Sum_probs=67.1
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcC--cccccceeeeEEEee
Q 024135 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDD--SEFRNAFSRAYVRVR 183 (272)
Q Consensus 106 ~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~--~~~~g~~~~~~~~~~ 183 (272)
.+..+|||+|||+.+++++|+++|.+||.|..+.++.+ +|||||+|.+.++|..|++.|++ ..+.| ..|.|.
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~--kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~G----r~l~V~ 87 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTSVTPVLRG----QPIYIQ 87 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTSCCEETT----EECCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCEEEEEECCHHHHHHHHHHhccCCceECC----EEEEEE
Confidence 45689999999999999999999999999999999876 67999999999999999998864 78888 566666
Q ss_pred ccccC
Q 024135 184 EYDHR 188 (272)
Q Consensus 184 ~~~~~ 188 (272)
....+
T Consensus 88 ~A~~~ 92 (105)
T 1sjq_A 88 FSNHK 92 (105)
T ss_dssp CCSSS
T ss_pred EcCCC
Confidence 65443
No 196
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2e-15 Score=105.58 Aligned_cols=82 Identities=16% Similarity=0.226 Sum_probs=71.1
Q ss_pred CCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC-CCeEEEEeCCHHHHHHHHHHhcCcccccceeeeEEE
Q 024135 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS-GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (272)
Q Consensus 103 ~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~-~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~ 181 (272)
....+..+|||+|||..+++++|+++|.+||.|..+.+..+.. .+||||+|.+.++|..|++.||+..+.| ..|.
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~ 92 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDG----YRLR 92 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETT----EECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECC----eEEE
Confidence 3445678999999999999999999999999999999977643 6799999999999999999999999999 5666
Q ss_pred eeccccC
Q 024135 182 VREYDHR 188 (272)
Q Consensus 182 ~~~~~~~ 188 (272)
|......
T Consensus 93 V~~a~~~ 99 (109)
T 1x4a_A 93 VEFPRSG 99 (109)
T ss_dssp EECCCCC
T ss_pred EEEcccC
Confidence 6665544
No 197
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.67 E-value=4.3e-16 Score=111.94 Aligned_cols=76 Identities=17% Similarity=0.287 Sum_probs=66.6
Q ss_pred CCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CCeEEEEeCCHHHHHHHHHHhcCcccccceeeeE
Q 024135 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (272)
Q Consensus 104 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~ 179 (272)
......+|||+|||..+++++|+++|.+||.|..|.++.+.. .+||||+|.+.++|..|++.||+..+.|..+.+.
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 334568999999999999999999999999999999987753 5699999999999999999999999999544433
No 198
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.67 E-value=1.3e-16 Score=121.35 Aligned_cols=77 Identities=29% Similarity=0.461 Sum_probs=71.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEccC
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~ 82 (272)
.+.++|||+|||+++|+++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+.+
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~--~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 173 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 173 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE--CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSS
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe--cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCC
Confidence 356899999999999999999999999999887 66788899999999999999999999999999999999999864
No 199
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.67 E-value=1.3e-16 Score=120.91 Aligned_cols=76 Identities=28% Similarity=0.598 Sum_probs=71.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEc
Q 024135 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (272)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (272)
+.++|||+|||+++|+++|+++|++||.|..+.+.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.||
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 468999999999999999999999999999999954 4667899999999999999999999999999999999987
No 200
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.67 E-value=2.2e-16 Score=122.48 Aligned_cols=81 Identities=27% Similarity=0.573 Sum_probs=74.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEc
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~ 80 (272)
.+.++|||+|||+.+++++|+++|+.||.|..+.+.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 4679999999999999999999999999999999954 4667899999999999999999999999999999999999
Q ss_pred cCCC
Q 024135 81 HGGR 84 (272)
Q Consensus 81 ~~~~ 84 (272)
.+..
T Consensus 192 ~~~~ 195 (198)
T 2yh0_A 192 SVGA 195 (198)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7643
No 201
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.66 E-value=1.9e-16 Score=119.45 Aligned_cols=77 Identities=22% Similarity=0.534 Sum_probs=71.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEcc
Q 024135 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (272)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (272)
++++|||+|||+++++++|.++|+.||.|..+.+.. ++.++|||||+|.+.++|.+|+. ++|..|.|+.|.|.|+.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 467999999999999999999999999999999954 47789999999999999999999 89999999999999986
Q ss_pred C
Q 024135 82 G 82 (272)
Q Consensus 82 ~ 82 (272)
+
T Consensus 165 p 165 (167)
T 2cjk_A 165 P 165 (167)
T ss_dssp C
T ss_pred C
Confidence 4
No 202
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.7e-15 Score=103.77 Aligned_cols=82 Identities=20% Similarity=0.261 Sum_probs=70.9
Q ss_pred CCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC--CCeEEEEeCCHHHHHHHHHHhcCcccccceeeeEE
Q 024135 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS--GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (272)
Q Consensus 103 ~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~--~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~ 180 (272)
.......+|||+|||..+++++|+++|.+||.|..+.+..+.. .+||||+|.+.++|..|+..||+..++| ..|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l 85 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEG----RKI 85 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETT----EEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECC----EEE
Confidence 3445678999999999999999999999999999999997754 5799999999999999999999999999 555
Q ss_pred EeeccccC
Q 024135 181 RVREYDHR 188 (272)
Q Consensus 181 ~~~~~~~~ 188 (272)
.|......
T Consensus 86 ~v~~a~~~ 93 (103)
T 2cq3_A 86 EVNNATAR 93 (103)
T ss_dssp EEEECCSS
T ss_pred EEEEcccC
Confidence 66555443
No 203
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=9.5e-16 Score=106.10 Aligned_cols=82 Identities=13% Similarity=0.214 Sum_probs=69.8
Q ss_pred CCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEec--CCCCeEEEEeCCHHHHHHHHHHhcCcccccceeeeEE
Q 024135 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD--GSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (272)
Q Consensus 103 ~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~--~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~ 180 (272)
....+..+|||+|||..+++++|+++|.+||.|..+.+..+ ...+||||+|.+.++|..|++.||+..+.|+ .|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~----~l 85 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK----PL 85 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSS----BC
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCc----EE
Confidence 33456789999999999999999999999999999999987 3345999999999999999999999999994 45
Q ss_pred EeeccccC
Q 024135 181 RVREYDHR 188 (272)
Q Consensus 181 ~~~~~~~~ 188 (272)
.|....+.
T Consensus 86 ~V~~a~~~ 93 (103)
T 2d9p_A 86 YVALAQRK 93 (103)
T ss_dssp EEEECSSC
T ss_pred EEEEeccc
Confidence 55554443
No 204
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.66 E-value=5.9e-16 Score=109.32 Aligned_cols=76 Identities=18% Similarity=0.285 Sum_probs=67.2
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC--CCeEEEEeCCHHHHHHHHHHhcCcccccceeeeEEEeecc
Q 024135 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS--GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREY 185 (272)
Q Consensus 108 ~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~--~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~~~~ 185 (272)
..+|||+|||..+++++|.++|.+||.|..|.++.+.. +|||||+|.+.++|+.|++.|++..+.| ..|.|...
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g----~~i~V~~a 80 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLND----RKVFVGRF 80 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETT----EECEEEES
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECC----EEEEEEEC
Confidence 46899999999999999999999999999999998764 4699999999999999999999999999 45555554
Q ss_pred cc
Q 024135 186 DH 187 (272)
Q Consensus 186 ~~ 187 (272)
..
T Consensus 81 ~~ 82 (115)
T 4f25_A 81 KS 82 (115)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 205
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=7.8e-16 Score=106.55 Aligned_cols=81 Identities=17% Similarity=0.153 Sum_probs=69.8
Q ss_pred CCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CCeEEEEeCCHHHHHHHHHHhcCcccccceeee
Q 024135 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (272)
Q Consensus 103 ~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~ 178 (272)
+...+..+|||+|||..+++++|+++|.+||.|..+.+..+.. .+||||+|.+.++|+.|++.||+..+.|+
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~---- 83 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGR---- 83 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTB----
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCc----
Confidence 3445678999999999999999999999999999999988754 56999999999999999999999999994
Q ss_pred EEEeecccc
Q 024135 179 YVRVREYDH 187 (272)
Q Consensus 179 ~~~~~~~~~ 187 (272)
.|.|.....
T Consensus 84 ~l~V~~a~~ 92 (103)
T 2dnm_A 84 ELRVQVARY 92 (103)
T ss_dssp CCEEEECSS
T ss_pred EEEEEECCc
Confidence 455555443
No 206
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.6e-15 Score=103.16 Aligned_cols=81 Identities=10% Similarity=0.098 Sum_probs=70.8
Q ss_pred CCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC--CCeEEEEeCCHHHHHHHHHHhcCcccccceeeeEEE
Q 024135 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS--GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (272)
Q Consensus 104 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~--~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~ 181 (272)
...+..+|||+|||..+++++|+++|.+||.|..|.+..+.. .+||||+|.+.++|..|++.|++..+.| ..|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~ 86 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILG----KEVK 86 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETT----EEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCC----CeEE
Confidence 345678999999999999999999999999999999998743 4799999999999999999999999999 5666
Q ss_pred eeccccC
Q 024135 182 VREYDHR 188 (272)
Q Consensus 182 ~~~~~~~ 188 (272)
|......
T Consensus 87 V~~a~~~ 93 (103)
T 2cqi_A 87 VNWATTP 93 (103)
T ss_dssp EEECCCT
T ss_pred EEECCCC
Confidence 6665543
No 207
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=2.1e-15 Score=103.61 Aligned_cols=80 Identities=16% Similarity=0.175 Sum_probs=69.9
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecC----CCCeEEEEeCCHHHHHHHHHHhcCcccccceeeeEEE
Q 024135 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (272)
Q Consensus 106 ~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~ 181 (272)
.+..+|||+|||..+++++|+++|.+||.|..+.+..+. ..+||||+|.+.++|..|++.||+..+.| ..+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~ 81 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQG----RMLH 81 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSS----CEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECC----cEEE
Confidence 456899999999999999999999999999999998775 34699999999999999999999999999 5566
Q ss_pred eeccccCC
Q 024135 182 VREYDHRR 189 (272)
Q Consensus 182 ~~~~~~~r 189 (272)
|.......
T Consensus 82 V~~a~~~~ 89 (99)
T 1whw_A 82 VLPSTIKK 89 (99)
T ss_dssp EEECCCCS
T ss_pred EEEcCCCc
Confidence 66655543
No 208
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=2.3e-15 Score=101.44 Aligned_cols=75 Identities=16% Similarity=0.323 Sum_probs=66.7
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCcccccceeeeEEEeecc
Q 024135 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREY 185 (272)
Q Consensus 106 ~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~~~~ 185 (272)
.+..+|||+|||.++++++|+++|.+||.|..+.+. .+||||+|.+.++|..|++.||+..+.| ..+.|...
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~v~~a 77 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII----KNYGFVHIEDKTAAEDAIRNLHHYKLHG----VNINVEAS 77 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE----TTEEEEEESSHHHHHHHHHHHTTCBCSS----CBCEEECS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE----CCEEEEEECCHHHHHHHHHHhcCCccCC----cEEEEEEC
Confidence 456899999999999999999999999999999998 4699999999999999999999999999 55666655
Q ss_pred ccC
Q 024135 186 DHR 188 (272)
Q Consensus 186 ~~~ 188 (272)
...
T Consensus 78 ~~~ 80 (90)
T 2dnq_A 78 KNK 80 (90)
T ss_dssp SCC
T ss_pred CCC
Confidence 444
No 209
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=1.9e-15 Score=103.74 Aligned_cols=80 Identities=16% Similarity=0.336 Sum_probs=68.5
Q ss_pred CCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecC----CCCeEEEEeCCHHHHHHHHHHhcCcccccceeeeE
Q 024135 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (272)
Q Consensus 104 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~ 179 (272)
...+..+|||+|||..+++++|+++|.+||.|..+.++.+. ..+||||+|.+.++|..|++ |++..+.|+ .
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~----~ 80 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGK----K 80 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSC----B
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCe----E
Confidence 34566899999999999999999999999999999998775 35799999999999999999 999999994 4
Q ss_pred EEeeccccC
Q 024135 180 VRVREYDHR 188 (272)
Q Consensus 180 ~~~~~~~~~ 188 (272)
|.|....+.
T Consensus 81 l~V~~a~~~ 89 (99)
T 2dgs_A 81 VEVKRAEPR 89 (99)
T ss_dssp CEEEECCCC
T ss_pred EEEEECCCC
Confidence 555554443
No 210
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.65 E-value=4.2e-16 Score=117.59 Aligned_cols=77 Identities=34% Similarity=0.578 Sum_probs=71.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCC--ceEEEE
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG--HRLRVE 78 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g--~~i~v~ 78 (272)
.+.++|||+|||..+++++|+++|+.||.|..+.+.. ++.++|||||+|.+.++|.+|+..|||..|.| ++|.|.
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~ 166 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVR 166 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEE
Confidence 4678999999999999999999999999999999954 46678999999999999999999999999988 999998
Q ss_pred Ec
Q 024135 79 LA 80 (272)
Q Consensus 79 ~~ 80 (272)
||
T Consensus 167 ~A 168 (168)
T 1b7f_A 167 LA 168 (168)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 211
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=1.8e-15 Score=103.50 Aligned_cols=79 Identities=22% Similarity=0.275 Sum_probs=68.2
Q ss_pred CCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCcccccceeeeEEEee
Q 024135 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVR 183 (272)
Q Consensus 104 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~~ 183 (272)
......+|||+|||..+++++|+++|.+||.|. +.+..+...+||||+|.+.++|..|++.||+..++|+ .+.|.
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----~l~V~ 89 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTD----TLRVA 89 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSS----CCEEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCc----EEEEE
Confidence 344568999999999999999999999999997 6777788889999999999999999999999999994 44554
Q ss_pred cccc
Q 024135 184 EYDH 187 (272)
Q Consensus 184 ~~~~ 187 (272)
...+
T Consensus 90 ~a~~ 93 (97)
T 2e5j_A 90 LARQ 93 (97)
T ss_dssp ECCC
T ss_pred EcCC
Confidence 4433
No 212
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.65 E-value=1.2e-15 Score=99.87 Aligned_cols=71 Identities=13% Similarity=0.189 Sum_probs=64.3
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCcccccceeeeEEEeec
Q 024135 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVRE 184 (272)
Q Consensus 108 ~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~~~ 184 (272)
..-|+|+||++.+++++|+++|.+||+|..+.+.. .+|||||+|.+.++|..|++.||+..+.| ..|.|..
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~--~kGfaFVey~~~~eA~~Ai~~Ln~~~l~g----r~I~V~~ 77 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL--NQGIALCKYTTREEANKAQMALNNCVLAN----TTIFAES 77 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTEEETT----EEEEEEC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC--CCcEEEEEECCHHHHHHHHHHhcCCEECC----cEEEEEE
Confidence 46899999999999999999999999999999866 57899999999999999999999999999 4555543
No 213
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.8e-15 Score=104.48 Aligned_cols=76 Identities=24% Similarity=0.313 Sum_probs=67.0
Q ss_pred CCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecC----CCCeEEEEeCCHHHHHHHHHHhcCcccccceeeeE
Q 024135 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (272)
Q Consensus 104 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~ 179 (272)
...+..+|||+|||..+++++|+++|.+||.|..+.+..+. ..+||||+|.+.++|..|++.||+..+.|+.+.+.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34456899999999999999999999999999999998875 35699999999999999999999999999554443
No 214
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=2.8e-15 Score=101.45 Aligned_cols=77 Identities=22% Similarity=0.368 Sum_probs=68.4
Q ss_pred CCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCcccccceeeeEEEee
Q 024135 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVR 183 (272)
Q Consensus 104 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~~ 183 (272)
...+..+|||+|||..+++++|+++|.+||.|..+.+..+ ||||+|.+.++|..|+..||+..+.| ..+.|.
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~----~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~V~ 77 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD----YAFVHMERAEDAVEAIRGLDNTEFQG----KRMHVQ 77 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS----EEEEEESCHHHHHHHHHHHTTEEETT----EEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC----EEEEEECCHHHHHHHHHHhCCCeeCC----cEEEEE
Confidence 3456689999999999999999999999999999999865 99999999999999999999999999 566666
Q ss_pred ccccC
Q 024135 184 EYDHR 188 (272)
Q Consensus 184 ~~~~~ 188 (272)
...+.
T Consensus 78 ~a~~~ 82 (92)
T 2dgt_A 78 LSTSR 82 (92)
T ss_dssp ESSCC
T ss_pred EccCC
Confidence 65544
No 215
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=2.2e-15 Score=102.60 Aligned_cols=78 Identities=15% Similarity=0.237 Sum_probs=68.2
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CCeEEEEeCCHHHHHHHHHHhcCcccccceeeeEEEe
Q 024135 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 182 (272)
Q Consensus 107 ~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~ 182 (272)
+..+|||+|||..+++++|+++|.+||.|..+.+..+.. .+||||+|.+.++|..|++.||+..+.| ..|.|
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~V 79 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAG----RPMRV 79 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSS----SCCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCC----cEEEE
Confidence 457999999999999999999999999999999998754 4699999999999999999999999999 44555
Q ss_pred eccccC
Q 024135 183 REYDHR 188 (272)
Q Consensus 183 ~~~~~~ 188 (272)
.....+
T Consensus 80 ~~a~~~ 85 (95)
T 2dnz_A 80 GHVTER 85 (95)
T ss_dssp EESSCC
T ss_pred EEcccc
Confidence 555443
No 216
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.65 E-value=3.8e-16 Score=118.57 Aligned_cols=76 Identities=22% Similarity=0.359 Sum_probs=69.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec--CCCCCceEEEEecChHHHHHHHHhcCCcccC---CceEEEEE
Q 024135 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFD---GHRLRVEL 79 (272)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~---g~~i~v~~ 79 (272)
+.++|||+|||+++|+++|+++|+.||.|..+.+.. ++.++|||||+|.+.++|.+|+..|||..+. |++|.|.|
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ 173 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKF 173 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEe
Confidence 568999999999999999999999999999999954 4667899999999999999999999998776 49999998
Q ss_pred c
Q 024135 80 A 80 (272)
Q Consensus 80 ~ 80 (272)
+
T Consensus 174 a 174 (175)
T 3nmr_A 174 A 174 (175)
T ss_dssp C
T ss_pred c
Confidence 7
No 217
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.64 E-value=5.8e-16 Score=119.30 Aligned_cols=77 Identities=17% Similarity=0.353 Sum_probs=69.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec--CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEccCC
Q 024135 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (272)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~ 83 (272)
.++|||+|||+++|+++|.++|+.||+|..|.|.. ++.++|||||+|.+.++|.+|+..+ +..|.|+.|.|.++...
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDDY 187 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTTC
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHHH
Confidence 47999999999999999999999999999999964 4677899999999999999999855 56999999999998754
No 218
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.64 E-value=5e-16 Score=120.23 Aligned_cols=80 Identities=24% Similarity=0.485 Sum_probs=70.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEcc
Q 024135 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (272)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (272)
+.++|||+|||+++|+++|+++|+.||.|..+.+.. ++.++|||||+|.+.++|.+|+.. +|..|.|+.|.|.++.
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~ 181 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKAL 181 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecC
Confidence 468999999999999999999999999999999964 467789999999999999999994 8999999999999997
Q ss_pred CCCC
Q 024135 82 GGRG 85 (272)
Q Consensus 82 ~~~~ 85 (272)
....
T Consensus 182 ~k~~ 185 (196)
T 1l3k_A 182 SKQE 185 (196)
T ss_dssp ----
T ss_pred ChhH
Confidence 6543
No 219
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.64 E-value=6.5e-16 Score=106.85 Aligned_cols=79 Identities=25% Similarity=0.436 Sum_probs=69.3
Q ss_pred CCCCCeEEEcCC--CCCCC--------HHHHHHHhhccCCeeEEEeecC-----CCCCceEEEEecChHHHHHHHHhcCC
Q 024135 3 SRASRTLYVGNL--PGDIR--------EREVEDLFYKYGPIAHIDLKIP-----PRPPGYAFVEFEEARDAEDAIRGRDG 67 (272)
Q Consensus 3 ~~~~~~l~v~nL--~~~~t--------~~~l~~~F~~~G~v~~v~~~~~-----~~~~g~afV~f~~~~~a~~a~~~l~g 67 (272)
+.|+++|.|.|+ |..+. +++|+++|++||.|.+|.|..+ +.++|+|||+|.++++|.+|+..|||
T Consensus 2 g~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 2 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp CSCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 468999999999 33443 3689999999999999999654 25789999999999999999999999
Q ss_pred cccCCceEEEEEcc
Q 024135 68 YDFDGHRLRVELAH 81 (272)
Q Consensus 68 ~~~~g~~i~v~~~~ 81 (272)
..|.|+.|.|.++.
T Consensus 82 ~~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 82 RKFANRVVVTKYCD 95 (105)
T ss_dssp CEETTEECEEEEEC
T ss_pred CEeCCCEEEEEEeC
Confidence 99999999999874
No 220
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.64 E-value=1.7e-15 Score=105.80 Aligned_cols=72 Identities=19% Similarity=0.141 Sum_probs=65.2
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----CeEEEEeCCHHHHHHHHHHhcCcccccceeee
Q 024135 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (272)
Q Consensus 107 ~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~ 178 (272)
+..+|||+||+..+++++|+++|++||.|..+.++.+..+ |||||+|.+.++|+.|++.|||..+.|+.+.+
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V 80 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHA 80 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 4579999999999999999999999999999999988653 59999999999999999999999999954433
No 221
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2.7e-15 Score=102.38 Aligned_cols=80 Identities=16% Similarity=0.164 Sum_probs=69.9
Q ss_pred CCccceEEEcCCCCCCCHHHHH----HHHHhcCCeeEEEEEecCC-CCeEEEEeCCHHHHHHHHHHhcCcccccceeeeE
Q 024135 105 RRSEYRVLVTGLPSSASWQDLK----DHMRRAGDVCFSQVFRDGS-GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (272)
Q Consensus 105 ~~~~~~~~v~nl~~~~~~~~l~----~~f~~~G~i~~~~~~~~~~-~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~ 179 (272)
.....+|||+|||..+++++|+ ++|.+||.|..+.+..+.. .+||||+|.+.++|..|++.||+..+.| ..
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~g----r~ 81 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGS----KK 81 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETT----EE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECC----eE
Confidence 3456799999999999999999 9999999999999987643 5799999999999999999999999999 56
Q ss_pred EEeeccccC
Q 024135 180 VRVREYDHR 188 (272)
Q Consensus 180 ~~~~~~~~~ 188 (272)
|.|....+.
T Consensus 82 l~V~~a~~~ 90 (96)
T 2dgx_A 82 ILVSLATGA 90 (96)
T ss_dssp EEEEECCCS
T ss_pred EEEEEcCCC
Confidence 666665443
No 222
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=3.9e-15 Score=104.46 Aligned_cols=83 Identities=11% Similarity=0.164 Sum_probs=71.7
Q ss_pred CCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecC----CCCeEEEEeCCHHHHHHHHHHhc------Ccccc
Q 024135 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLD------DSEFR 172 (272)
Q Consensus 103 ~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~------~~~~~ 172 (272)
....+..+|||+|||..+++++|+++|.+||.|..|.+..+. ..+||||+|.+.++|..|++.|| +..+.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 344567899999999999999999999999999999999774 35699999999999999999999 99999
Q ss_pred cceeeeEEEeeccccCC
Q 024135 173 NAFSRAYVRVREYDHRR 189 (272)
Q Consensus 173 g~~~~~~~~~~~~~~~r 189 (272)
| ..|.|....++.
T Consensus 90 g----~~l~v~~a~~~~ 102 (111)
T 1x4h_A 90 G----RQLKVDLAVTRD 102 (111)
T ss_dssp S----CEEEEECCCCCC
T ss_pred C----EEEEEEECCCCc
Confidence 9 566666665543
No 223
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.64 E-value=5.6e-15 Score=102.18 Aligned_cols=75 Identities=9% Similarity=0.194 Sum_probs=66.6
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCcccccceeeeEEEeecc
Q 024135 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREY 185 (272)
Q Consensus 106 ~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~~~~ 185 (272)
.+..+|||+|||..+++++|+++|.+||.|..+.+.++ ||||+|.+.++|..|++.||+..+.| ..|.|...
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~----~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKD----YAFIHFDERDGAVKAMEEMNGKDLEG----ENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECSS----CEEEEESSHHHHHHHHHHHTTEEETT----EEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC----EEEEEeCCHHHHHHHHHHHCCCccCC----CEEEEEEc
Confidence 45689999999999999999999999999999998854 99999999999999999999999999 55666655
Q ss_pred ccC
Q 024135 186 DHR 188 (272)
Q Consensus 186 ~~~ 188 (272)
.+.
T Consensus 81 ~~~ 83 (103)
T 2dgu_A 81 KPP 83 (103)
T ss_dssp CCC
T ss_pred CCC
Confidence 443
No 224
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=1.1e-15 Score=104.74 Aligned_cols=75 Identities=11% Similarity=0.097 Sum_probs=65.0
Q ss_pred CccceEEEcCCCC-CCCHHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCc--ccccceeeeEEEe
Q 024135 106 RSEYRVLVTGLPS-SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDS--EFRNAFSRAYVRV 182 (272)
Q Consensus 106 ~~~~~~~v~nl~~-~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~--~~~g~~~~~~~~~ 182 (272)
.+..+|||+|||+ .+++++|.++|.+||.|..+.++.++ +||||+|++.++|..|++.|++. .+.| ..|.|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k--g~aFVef~~~~~A~~Ai~~l~~~~~~~~G----r~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI--NEAFIEMATTEDAQAAVDYYTTTPALVFG----KPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS--SCEEEEESSHHHHHHHHHHHHHSCCEETT----EECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC--CEEEEEECCHHHHHHHHHHHcCCCceECC----cEEEE
Confidence 4678999999999 99999999999999999999998764 69999999999999999999864 4889 45555
Q ss_pred eccc
Q 024135 183 REYD 186 (272)
Q Consensus 183 ~~~~ 186 (272)
....
T Consensus 87 ~~a~ 90 (102)
T 1x4d_A 87 HLSQ 90 (102)
T ss_dssp EEEC
T ss_pred EECC
Confidence 5544
No 225
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3.1e-15 Score=103.51 Aligned_cols=81 Identities=15% Similarity=0.202 Sum_probs=70.6
Q ss_pred CCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CCeEEEEeCCHHHHHHHHHHhcCcccccceeeeE
Q 024135 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (272)
Q Consensus 104 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~ 179 (272)
...+..+|||+|||..+++++|+++|.+||.|..|.+..+.. .+||||+|.+.++|..|++.||+..+.| ..
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~ 86 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDH----LI 86 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETT----EE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCC----cE
Confidence 345678999999999999999999999999999999998854 3599999999999999999999999999 55
Q ss_pred EEeeccccC
Q 024135 180 VRVREYDHR 188 (272)
Q Consensus 180 ~~~~~~~~~ 188 (272)
|.|....+.
T Consensus 87 l~v~~a~~~ 95 (103)
T 2cq0_A 87 LNVEWAKPS 95 (103)
T ss_dssp CEEEESSCC
T ss_pred EEEEECCCC
Confidence 666655444
No 226
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.64 E-value=9.1e-15 Score=103.22 Aligned_cols=81 Identities=21% Similarity=0.256 Sum_probs=70.7
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----CeEEEEeCCHHHHHHHHHHhcCcccccceeeeEE
Q 024135 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (272)
Q Consensus 105 ~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~ 180 (272)
.....+|||+|||.++++++|+++|.+||.|..+.+..+... +||||+|.+.++|+.|++.||+..+.| ..|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l 97 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGM----KRL 97 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETT----EEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECC----EEE
Confidence 345689999999999999999999999999999999988643 599999999999999999999999999 566
Q ss_pred EeeccccCC
Q 024135 181 RVREYDHRR 189 (272)
Q Consensus 181 ~~~~~~~~r 189 (272)
.|....+..
T Consensus 98 ~V~~a~~~~ 106 (115)
T 2cpz_A 98 KVQLKRSKN 106 (115)
T ss_dssp EEECCCCSC
T ss_pred EEEEcCCCC
Confidence 666655443
No 227
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3.6e-15 Score=103.54 Aligned_cols=81 Identities=25% Similarity=0.279 Sum_probs=69.8
Q ss_pred CCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecC----CCCeEEEEeCCHHHHHHHHHHhcCcccccceeee
Q 024135 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (272)
Q Consensus 103 ~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~ 178 (272)
....+..+|||+|||..+++++|+++|.+||.|..+.+..+. ..+||||+|.+.++|..|++.|++..+.| .
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~ 85 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYG----K 85 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSS----C
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECC----e
Confidence 344567899999999999999999999999999999998875 34699999999999999999999999999 4
Q ss_pred EEEeecccc
Q 024135 179 YVRVREYDH 187 (272)
Q Consensus 179 ~~~~~~~~~ 187 (272)
.|.|.....
T Consensus 86 ~l~v~~a~~ 94 (105)
T 1x5u_A 86 PIRVNKASA 94 (105)
T ss_dssp BCEEEETTT
T ss_pred EEEEEECCC
Confidence 455555443
No 228
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.63 E-value=7.8e-16 Score=115.91 Aligned_cols=76 Identities=32% Similarity=0.607 Sum_probs=69.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCceEEEEecChHHHHHHHHhcCCcccCCce--EEEEE
Q 024135 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHR--LRVEL 79 (272)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~--i~v~~ 79 (272)
+.++|||+|||+.+++++|+++|+.||.|..+.+.. ++.++|||||+|.+.++|.+|+..|||..|.|+. |.|.|
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~ 166 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 166 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEe
Confidence 568999999999999999999999999999999954 4567899999999999999999999999999964 88887
Q ss_pred c
Q 024135 80 A 80 (272)
Q Consensus 80 ~ 80 (272)
|
T Consensus 167 A 167 (167)
T 1fxl_A 167 A 167 (167)
T ss_dssp C
T ss_pred C
Confidence 5
No 229
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.63 E-value=1.4e-14 Score=102.24 Aligned_cols=82 Identities=18% Similarity=0.270 Sum_probs=70.9
Q ss_pred CCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CCeEEEEeCCHHHHHHHHHHhcCcccccceeee
Q 024135 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (272)
Q Consensus 103 ~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~ 178 (272)
.......+|||+|||..+++++|+++|.+||.|..+.+..+.. .+||||+|.+.++|..|++.|++..+.| .
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~ 85 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG----R 85 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETT----E
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC----E
Confidence 3445678999999999999999999999999999999998854 3599999999999999999999999999 5
Q ss_pred EEEeeccccC
Q 024135 179 YVRVREYDHR 188 (272)
Q Consensus 179 ~~~~~~~~~~ 188 (272)
.|.|......
T Consensus 86 ~l~V~~a~~~ 95 (115)
T 2dgo_A 86 QIRTNWATRK 95 (115)
T ss_dssp ECEEEESSCC
T ss_pred EEEEEEccCC
Confidence 5566655443
No 230
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=3.9e-15 Score=101.78 Aligned_cols=76 Identities=18% Similarity=0.248 Sum_probs=66.8
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCcccc--cceeeeEEEee
Q 024135 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR--NAFSRAYVRVR 183 (272)
Q Consensus 106 ~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~--g~~~~~~~~~~ 183 (272)
.+..+|||+|||..+++++|+++|.+||.|..+.+..+ .+||||+|.+.++|+.|++.||+..+. | ..+.|.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~~g----~~l~V~ 88 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG--DSFAYIQYESLDAAQAACAKMRGFPLGGPD----RRLRVD 88 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS--SCCEEEEESSHHHHHHHHHHHTTCBCSSSS----CBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC--CCEEEEEECCHHHHHHHHHHHCCCEeCCCC----cEEEEE
Confidence 45689999999999999999999999999999999876 569999999999999999999999999 7 445555
Q ss_pred cccc
Q 024135 184 EYDH 187 (272)
Q Consensus 184 ~~~~ 187 (272)
...+
T Consensus 89 ~a~~ 92 (97)
T 1why_A 89 FAKS 92 (97)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 5444
No 231
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2.3e-15 Score=103.99 Aligned_cols=81 Identities=21% Similarity=0.209 Sum_probs=70.6
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecC----CCCeEEEEeCCHHHHHHHHHHhcCcccccceeeeEE
Q 024135 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (272)
Q Consensus 105 ~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~ 180 (272)
..+..+|||+|||..+++++|+++|.+||.|..+.++.+. ..+||||+|.+.++|..|++.||+..+.| ..|
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l 84 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG----RTI 84 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETT----EEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC----cEE
Confidence 3456899999999999999999999999999999998764 35699999999999999999999999999 566
Q ss_pred EeeccccCC
Q 024135 181 RVREYDHRR 189 (272)
Q Consensus 181 ~~~~~~~~r 189 (272)
.|....+..
T Consensus 85 ~V~~a~~~~ 93 (102)
T 2cqb_A 85 RVNLAKPMR 93 (102)
T ss_dssp EEEECCCCC
T ss_pred EEEeCCCCC
Confidence 666665543
No 232
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.63 E-value=2.8e-15 Score=101.74 Aligned_cols=75 Identities=15% Similarity=0.187 Sum_probs=65.2
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCcc--cccceeeeEEEee
Q 024135 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSE--FRNAFSRAYVRVR 183 (272)
Q Consensus 106 ~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~--~~g~~~~~~~~~~ 183 (272)
.++.+|||+|||.++++++|.++|.+||.|..+.+++. +|+|||+|++.++|..|++.|++.. +.| ..+.|.
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~--kg~AFVef~~~~~A~~Av~~ln~~~~~i~G----r~i~V~ 92 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK--KRQALVEFEDVLGACNAVNYAADNQIYIAG----HPAFVN 92 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHHHSCEEETT----EEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC--CCEEEEEECCHHHHHHHHHHhcCCCceeCC----cEEEEE
Confidence 45689999999999999999999999999999998753 5799999999999999999999876 678 555555
Q ss_pred ccc
Q 024135 184 EYD 186 (272)
Q Consensus 184 ~~~ 186 (272)
...
T Consensus 93 ~S~ 95 (100)
T 3r27_A 93 YST 95 (100)
T ss_dssp ECS
T ss_pred ecc
Confidence 443
No 233
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.63 E-value=1.7e-15 Score=101.60 Aligned_cols=69 Identities=14% Similarity=0.222 Sum_probs=63.8
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecC-----CCCeEEEEeCCHHHHHHHHHHhcCccccccee
Q 024135 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG-----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (272)
Q Consensus 108 ~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~-----~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~ 176 (272)
..+|||+|||.++++++|.++|.+||.|..+.+..+. ..+||||+|.+.++|..|++.|||..++|+.+
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 77 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEI 77 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEE
Confidence 4799999999999999999999999999999998776 56799999999999999999999999999443
No 234
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=2.7e-15 Score=102.85 Aligned_cols=78 Identities=17% Similarity=0.265 Sum_probs=68.4
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC-------CCeEEEEeCCHHHHHHHHHHhcCcccccceeeeE
Q 024135 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS-------GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (272)
Q Consensus 107 ~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~-------~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~ 179 (272)
+..+|||+|||..+++++|+++|.+||.|..+.+..+.. .+||||+|.+.++|..|++.||+..+.| ..
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~ 79 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDG----HK 79 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETT----EE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCC----eE
Confidence 457999999999999999999999999999999987654 3699999999999999999999999999 56
Q ss_pred EEeeccccC
Q 024135 180 VRVREYDHR 188 (272)
Q Consensus 180 ~~~~~~~~~ 188 (272)
|.|......
T Consensus 80 l~V~~a~~~ 88 (98)
T 2cpf_A 80 LEVRISERA 88 (98)
T ss_dssp CEEECSSCS
T ss_pred EEEEEccCC
Confidence 666665443
No 235
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=3.4e-15 Score=100.63 Aligned_cols=75 Identities=21% Similarity=0.352 Sum_probs=66.7
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCcccccceeeeEEEeecc
Q 024135 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREY 185 (272)
Q Consensus 106 ~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~~~~ 185 (272)
.+..+|||+|||..+++++|+++|.+||.|..+.+..+ ||||+|.+.++|..|++.||+..+.| ..+.|...
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~----~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~a 78 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD----YAFVHMEKEADAKAAIAQLNGKEVKG----KRINVELS 78 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS----CEEEEESCHHHHHHHHHHHTTCEETT----EECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC----EEEEEECCHHHHHHHHHHhCCCEECC----cEEEEEEC
Confidence 45689999999999999999999999999999999865 99999999999999999999999999 55566555
Q ss_pred ccC
Q 024135 186 DHR 188 (272)
Q Consensus 186 ~~~ 188 (272)
.+.
T Consensus 79 ~~~ 81 (90)
T 2dnp_A 79 TKG 81 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 443
No 236
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=4e-15 Score=103.09 Aligned_cols=80 Identities=19% Similarity=0.385 Sum_probs=68.5
Q ss_pred CCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC-----CCeEEEEeCCHHHHHHHHHHhcCcccccceee
Q 024135 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS-----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (272)
Q Consensus 103 ~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~-----~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~ 177 (272)
.+..+..+|||+|||..+++++|+++|.+|| |..|.++.+.. .+||||+|.+.++|+.|+ .||+..+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g---- 83 (104)
T 1wi8_A 10 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGN---- 83 (104)
T ss_dssp CCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETT----
T ss_pred CCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCC----
Confidence 3445678999999999999999999999999 99999987754 469999999999999999 999999999
Q ss_pred eEEEeeccccC
Q 024135 178 AYVRVREYDHR 188 (272)
Q Consensus 178 ~~~~~~~~~~~ 188 (272)
..|.|.....+
T Consensus 84 ~~l~V~~a~~~ 94 (104)
T 1wi8_A 84 KRIRVDVADQA 94 (104)
T ss_dssp EECEEEECCCC
T ss_pred cEEEEEEccCC
Confidence 55555555443
No 237
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=5.5e-15 Score=101.33 Aligned_cols=78 Identities=9% Similarity=0.132 Sum_probs=66.5
Q ss_pred CCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhc--CcccccceeeeEEE
Q 024135 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLD--DSEFRNAFSRAYVR 181 (272)
Q Consensus 104 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~--~~~~~g~~~~~~~~ 181 (272)
...+..+|||+|||+.+++++|+++|.+||.|..+.++.+ ++||||+|.+.++|..|++.|+ +..+.| ..+.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~~~G----r~l~ 84 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYYSAVTPHLRN----QPIY 84 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHHHSCCEETT----EECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC--CCEEEEEECCHHHHHHHHHHhccCCceECC----cEEE
Confidence 3456789999999999999999999999999999988876 6799999999999999999874 677888 5555
Q ss_pred eecccc
Q 024135 182 VREYDH 187 (272)
Q Consensus 182 ~~~~~~ 187 (272)
|.....
T Consensus 85 V~~a~~ 90 (101)
T 2cq1_A 85 IQYSNH 90 (101)
T ss_dssp EEECSC
T ss_pred EEEcCc
Confidence 555543
No 238
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=4.8e-15 Score=103.26 Aligned_cols=82 Identities=16% Similarity=0.284 Sum_probs=69.7
Q ss_pred CCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecC-----CCCeEEEEeCCHHHHHHHHHHh-cCccccccee
Q 024135 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG-----SGTTGIVDYTNYDDMKHAIKKL-DDSEFRNAFS 176 (272)
Q Consensus 103 ~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~-----~~~~~fv~f~~~~~a~~a~~~l-~~~~~~g~~~ 176 (272)
.......+|||+|||..+++++|+++|.+||.|..|.+..+. ..+||||+|.+.++|..|++.| |+..+.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~-- 87 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGR-- 87 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSC--
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCC--
Confidence 344567899999999999999999999999999999998772 3569999999999999999999 99999994
Q ss_pred eeEEEeeccccC
Q 024135 177 RAYVRVREYDHR 188 (272)
Q Consensus 177 ~~~~~~~~~~~~ 188 (272)
.|.|......
T Consensus 88 --~l~v~~a~~~ 97 (107)
T 2cph_A 88 --RLVLEWADSE 97 (107)
T ss_dssp --BCEEEECCCC
T ss_pred --EEEEEeCCCC
Confidence 4555554443
No 239
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.63 E-value=1.2e-15 Score=124.98 Aligned_cols=75 Identities=23% Similarity=0.414 Sum_probs=70.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccC-CceEEEEEcc
Q 024135 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFD-GHRLRVELAH 81 (272)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~-g~~i~v~~~~ 81 (272)
++++|||+|||..+++++|+++|+.||.|..|.|..+. +|||||+|.+.++|.+|+..|||..|. |+.|.|.|++
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR--HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC--CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 67899999999999999999999999999999997432 589999999999999999999999999 9999999985
No 240
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.63 E-value=3.9e-15 Score=103.54 Aligned_cols=81 Identities=16% Similarity=0.262 Sum_probs=68.6
Q ss_pred CCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CCeEEEEeCCHHHHHHHHHHhcCccc---cccee
Q 024135 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEF---RNAFS 176 (272)
Q Consensus 104 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~~~~~---~g~~~ 176 (272)
......+|||+|||..+++++|+++|.+||.|..+.++.+.. .+||||+|.+.++|..|++.||+..+ .|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g--- 85 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMN--- 85 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCS---
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCC---
Confidence 344568999999999999999999999999999999988653 57999999999999999999999987 77
Q ss_pred eeEEEeeccccC
Q 024135 177 RAYVRVREYDHR 188 (272)
Q Consensus 177 ~~~~~~~~~~~~ 188 (272)
..|.|......
T Consensus 86 -~~l~v~~a~~~ 96 (106)
T 2dgp_A 86 -RPIQVKPADSE 96 (106)
T ss_dssp -SCCEEEECCCC
T ss_pred -ceEEEEECCcc
Confidence 44555554443
No 241
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=4.5e-15 Score=101.90 Aligned_cols=83 Identities=7% Similarity=0.106 Sum_probs=72.4
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHHhcCCee-EEEEEecCCC----CeEEEEeCCHHHHHHHHHHhcCcccccceeeeEE
Q 024135 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVC-FSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (272)
Q Consensus 106 ~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~-~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~ 180 (272)
.+..+|||+|||..+++++|+++|.+||.|. .+.+..++.. +||||+|.+.++|+.|++.||+..+.|......+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 4568999999999999999999999999999 9999988643 5999999999999999999999999997654557
Q ss_pred EeeccccC
Q 024135 181 RVREYDHR 188 (272)
Q Consensus 181 ~~~~~~~~ 188 (272)
.+....+.
T Consensus 87 ~v~~a~~~ 94 (99)
T 2div_A 87 KLNYATYS 94 (99)
T ss_dssp CEEETTCC
T ss_pred EEeecCCC
Confidence 77766544
No 242
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=4.4e-15 Score=100.91 Aligned_cols=73 Identities=16% Similarity=0.251 Sum_probs=65.8
Q ss_pred CCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CCeEEEEeCCHHHHHHHHHHhcCcccccce
Q 024135 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (272)
Q Consensus 103 ~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~ 175 (272)
....+..+|||+|||..+++++|+++|.+||.|..+.+..+.. .+||||+|.+.++|..|++.||+..+.|+.
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 87 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRV 87 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcE
Confidence 4445678999999999999999999999999999999988754 469999999999999999999999999943
No 243
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=4.3e-15 Score=103.87 Aligned_cols=77 Identities=16% Similarity=0.219 Sum_probs=68.8
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCcccccceeeeEEEeecc
Q 024135 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREY 185 (272)
Q Consensus 106 ~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~~~~ 185 (272)
....+|||+|||..+++++|+++|.+||.|..+.+..+ .+||||+|.+.++|..|+..|++..+.| ..+.|...
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~a 96 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE--KGYSFVRFSTHESAAHAIVSVNGTTIEG----HVVKCYWG 96 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTCEETT----EECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC--CCEEEEEECCHHHHHHHHHHcCCCEECC----cEEEEEec
Confidence 35679999999999999999999999999999999887 6799999999999999999999999999 56666665
Q ss_pred ccC
Q 024135 186 DHR 188 (272)
Q Consensus 186 ~~~ 188 (272)
+..
T Consensus 97 ~~~ 99 (109)
T 1x4g_A 97 KES 99 (109)
T ss_dssp CCC
T ss_pred CCC
Confidence 544
No 244
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=8e-15 Score=99.82 Aligned_cols=79 Identities=20% Similarity=0.256 Sum_probs=69.5
Q ss_pred CCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----CeEEEEeCCHHHHHHHHHHhcCcccccceeee
Q 024135 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (272)
Q Consensus 103 ~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~ 178 (272)
....+..+|||+|||..+++++|+++|.+||.|..+.+..++.. +||||+|.+.++|..|++.||+..+.| .
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~ 85 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG----R 85 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETT----E
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC----E
Confidence 44556789999999999999999999999999999999987543 599999999999999999999999999 5
Q ss_pred EEEeecc
Q 024135 179 YVRVREY 185 (272)
Q Consensus 179 ~~~~~~~ 185 (272)
.|.|...
T Consensus 86 ~l~v~~a 92 (95)
T 2cqc_A 86 RIRVSGP 92 (95)
T ss_dssp EEEEECC
T ss_pred EEEEEec
Confidence 5555544
No 245
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=3.3e-15 Score=104.99 Aligned_cols=77 Identities=8% Similarity=0.107 Sum_probs=66.1
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcC--cccccceeeeEEEe
Q 024135 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDD--SEFRNAFSRAYVRV 182 (272)
Q Consensus 105 ~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~--~~~~g~~~~~~~~~ 182 (272)
..+..+|||+|||+++++++|+++|.+||.|..+.++.+ ++||||+|++.++|..|++.+++ ..+.|+ .|.|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~--kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr----~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQ----PIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG--GTEEEEECSCHHHHHHHHHHHHHHCCCBTTB----CCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhccCCceECCe----EEEE
Confidence 345689999999999999999999999999999999876 57999999999999999999874 688994 4555
Q ss_pred ecccc
Q 024135 183 REYDH 187 (272)
Q Consensus 183 ~~~~~ 187 (272)
.....
T Consensus 102 ~~a~~ 106 (119)
T 2ad9_A 102 QFSNH 106 (119)
T ss_dssp EECSS
T ss_pred EEccC
Confidence 54443
No 246
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.62 E-value=1.2e-15 Score=118.43 Aligned_cols=77 Identities=22% Similarity=0.362 Sum_probs=71.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccC-CeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccC-CceEEEEEcc
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYG-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFD-GHRLRVELAH 81 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G-~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~-g~~i~v~~~~ 81 (272)
.++++|||+|||..+++++|+++|+.|| .|..+.+..+ .+|+|||+|.+.++|.+|+..|||..|. |+.|.|.|++
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 195 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK--DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 195 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST--TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC--CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeec
Confidence 3589999999999999999999999999 9999998543 3789999999999999999999999999 9999999987
Q ss_pred C
Q 024135 82 G 82 (272)
Q Consensus 82 ~ 82 (272)
.
T Consensus 196 ~ 196 (198)
T 1qm9_A 196 S 196 (198)
T ss_dssp C
T ss_pred c
Confidence 5
No 247
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.62 E-value=2.4e-15 Score=103.68 Aligned_cols=74 Identities=20% Similarity=0.243 Sum_probs=66.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCcccccceeeeEEEeecccc
Q 024135 109 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYDH 187 (272)
Q Consensus 109 ~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~~~~~~ 187 (272)
++|||+|||..+++++|+++|.+||.|..+.+..+ ..+||||+|.+.++|..|++.|++..+.|+ .+.|.....
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----~l~V~~a~~ 74 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-PPGFAFVEFEDPRDAEDAVRGLDGKVICGS----RVRVELSTG 74 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-SSSEEEEECSSHHHHHHHHHHHHHSCSSSC----CCEEEESSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-CCCEEEEEECCHHHHHHHHHHHCCCeECCc----EEEEEEccC
Confidence 47999999999999999999999999999999988 778999999999999999999999999994 455555443
No 248
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.9e-14 Score=101.41 Aligned_cols=78 Identities=22% Similarity=0.329 Sum_probs=68.2
Q ss_pred CCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC---CeEEEEeCCHHHHHHHHHHhcCcccccceeeeEE
Q 024135 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG---TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (272)
Q Consensus 104 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~---~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~ 180 (272)
...+..+|||+|||..+++++|+++|.+||.|..+.+..+..+ +||||+|.+.++|..|++.||+..+.|+ .|
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----~l 86 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDR----PM 86 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTE----EC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCC----EE
Confidence 3445789999999999999999999999999999999988653 5999999999999999999999999994 44
Q ss_pred Eeecc
Q 024135 181 RVREY 185 (272)
Q Consensus 181 ~~~~~ 185 (272)
.|...
T Consensus 87 ~v~~a 91 (114)
T 2do0_A 87 HVKMD 91 (114)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 55444
No 249
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=1.6e-14 Score=99.34 Aligned_cols=80 Identities=19% Similarity=0.349 Sum_probs=69.8
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC---CeEEEEeCCHHHHHHHHHHhcCcccccceeeeEEE
Q 024135 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG---TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (272)
Q Consensus 105 ~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~---~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~ 181 (272)
..+..+|||+|||..+++++|.++|.+||.|..+.+..+..+ +||||+|.+.++|..|++.||+..+.| ..|.
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~ 89 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKE----NIIK 89 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSS----CEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECC----EEEE
Confidence 345689999999999999999999999999999999987632 599999999999999999999999999 5566
Q ss_pred eeccccC
Q 024135 182 VREYDHR 188 (272)
Q Consensus 182 ~~~~~~~ 188 (272)
|....+.
T Consensus 90 v~~a~~~ 96 (100)
T 2do4_A 90 VAISNSG 96 (100)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 6655443
No 250
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.61 E-value=4.1e-15 Score=101.51 Aligned_cols=76 Identities=11% Similarity=0.237 Sum_probs=67.0
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CCeEEEEeCCHHHHHHHHHHhcCcccccceeeeEEEee
Q 024135 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVR 183 (272)
Q Consensus 108 ~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~~ 183 (272)
..+|||+|||..+++++|.++|++||.|..+.+..+.. .|||||+|.+.++|..|++.|+|..++| ..+.|.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~V~ 77 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGS----RFLKCG 77 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETT----EECEEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECC----eEEEEE
Confidence 57999999999999999999999999999999988753 5799999999999999999999999999 455555
Q ss_pred cccc
Q 024135 184 EYDH 187 (272)
Q Consensus 184 ~~~~ 187 (272)
...+
T Consensus 78 ~a~~ 81 (96)
T 2x1f_A 78 YSSN 81 (96)
T ss_dssp ECSC
T ss_pred EcCC
Confidence 4433
No 251
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.61 E-value=1.2e-14 Score=100.44 Aligned_cols=80 Identities=19% Similarity=0.300 Sum_probs=68.6
Q ss_pred CCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CCeEEEEeCCHHHHHHHHHHhcCcccccceeee
Q 024135 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (272)
Q Consensus 103 ~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~ 178 (272)
.+..+..+|||+|||..+++++|+++|.+|| |..|.++.+.. .+||||+|.+.++|..|+ .||+..+.| .
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g----~ 83 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGD----R 83 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETT----E
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECC----e
Confidence 3445678999999999999999999999997 99999998865 359999999999999999 899999999 5
Q ss_pred EEEeeccccC
Q 024135 179 YVRVREYDHR 188 (272)
Q Consensus 179 ~~~~~~~~~~ 188 (272)
.|.|....+.
T Consensus 84 ~l~V~~a~~~ 93 (103)
T 2dng_A 84 SLRVDIAEGR 93 (103)
T ss_dssp ECEEEECCCC
T ss_pred EEEEEEecCC
Confidence 5566555443
No 252
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=4.3e-15 Score=101.41 Aligned_cols=78 Identities=15% Similarity=0.233 Sum_probs=67.9
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHHhcCCeeEE-EEEecC----CCCeEEEEeCCHHHHHHHHHHhcCcccccceeeeEEE
Q 024135 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFS-QVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (272)
Q Consensus 107 ~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~-~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~ 181 (272)
+..+|||+|||..+++++|.++|.+||.|..+ .+..++ ..+||||+|.+.++|+.|++.||+..+.| ..+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~ 79 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCN----RPIT 79 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETT----EECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECC----EEEE
Confidence 45799999999999999999999999999999 888774 34699999999999999999999999999 5555
Q ss_pred eeccccC
Q 024135 182 VREYDHR 188 (272)
Q Consensus 182 ~~~~~~~ 188 (272)
|....+.
T Consensus 80 v~~a~~~ 86 (96)
T 1x5t_A 80 VSYAFKK 86 (96)
T ss_dssp EEESCCC
T ss_pred EEEeccc
Confidence 5555443
No 253
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.61 E-value=5.5e-15 Score=98.91 Aligned_cols=70 Identities=19% Similarity=0.244 Sum_probs=63.4
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CCeEEEEeCCHHHHHHHHHHhcCccccccee
Q 024135 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (272)
Q Consensus 107 ~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~ 176 (272)
+..+|||+|||..+++++|+++|++||.|..+.+..+.. .+||||+|.+.++|..|++.||+..+.|+.+
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 78 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 78 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 467999999999999999999999999999999998853 3599999999999999999999999999443
No 254
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.61 E-value=2.9e-15 Score=118.87 Aligned_cols=77 Identities=22% Similarity=0.362 Sum_probs=71.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccC-CeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccC-CceEEEEEcc
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYG-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFD-GHRLRVELAH 81 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G-~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~-g~~i~v~~~~ 81 (272)
.++++|||+|||+.+++++|+++|+.|| .|..+.+... .+|||||+|.+.++|.+|+..|||..|. |+.|.|.|++
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~ 226 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK--DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 226 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS--STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECS
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC--CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEec
Confidence 3579999999999999999999999999 9999998542 4789999999999999999999999999 9999999987
Q ss_pred C
Q 024135 82 G 82 (272)
Q Consensus 82 ~ 82 (272)
.
T Consensus 227 ~ 227 (229)
T 2adc_A 227 S 227 (229)
T ss_dssp S
T ss_pred C
Confidence 5
No 255
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.61 E-value=4.3e-15 Score=103.50 Aligned_cols=77 Identities=16% Similarity=0.227 Sum_probs=67.7
Q ss_pred CCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCcccccceeeeEEEee
Q 024135 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVR 183 (272)
Q Consensus 104 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~~ 183 (272)
......+|||+|||..+++++|+++|.+||.|..+.+. .|||||+|.+.++|..|++.|||..++| ..+.|.
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~----kg~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~V~ 98 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL----NGFAFVEFEEAESAAKAIEEVHGKSFAN----QPLEVV 98 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE----TTEEEEECSSHHHHHHHHHHHTTCEETT----EECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEECCHHHHHHHHHHcCCCEECC----eEEEEE
Confidence 34566899999999999999999999999999999998 6799999999999999999999999999 556666
Q ss_pred ccccC
Q 024135 184 EYDHR 188 (272)
Q Consensus 184 ~~~~~ 188 (272)
.....
T Consensus 99 ~a~~~ 103 (108)
T 2jvo_A 99 YSKLP 103 (108)
T ss_dssp SCSCC
T ss_pred EecCC
Confidence 55443
No 256
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.61 E-value=3.1e-14 Score=103.95 Aligned_cols=82 Identities=16% Similarity=0.194 Sum_probs=71.2
Q ss_pred CCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CCeEEEEeCCHHHHHHHHHHhcCcccccceeee
Q 024135 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (272)
Q Consensus 103 ~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~ 178 (272)
.......+|||+|||..+++++|.++|..||.|..|.+..+.. .+||||+|.+.++|..|++.||+..+.| .
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~ 112 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILN----K 112 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSS----C
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC----e
Confidence 3445668999999999999999999999999999999998865 4599999999999999999999999999 5
Q ss_pred EEEeeccccC
Q 024135 179 YVRVREYDHR 188 (272)
Q Consensus 179 ~~~~~~~~~~ 188 (272)
.|.|......
T Consensus 113 ~l~v~~a~~~ 122 (139)
T 1u6f_A 113 RLKVALAASG 122 (139)
T ss_dssp EEEEEESSCC
T ss_pred EEEEEECCCC
Confidence 5666655443
No 257
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.61 E-value=4.8e-15 Score=106.64 Aligned_cols=80 Identities=21% Similarity=0.230 Sum_probs=69.5
Q ss_pred CCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecC----CCCeEEEEeCCHHHHHHHHHHhcCcccccceeeeE
Q 024135 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (272)
Q Consensus 104 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~ 179 (272)
...+..+|||+|||..+++++|+++|.+||.|..+.+..+. ..+||||+|.+.++|+.|++.||+..+.| ..
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g----~~ 117 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG----RR 117 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSS----SC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC----EE
Confidence 34567899999999999999999999999999999998774 45699999999999999999999999999 45
Q ss_pred EEeecccc
Q 024135 180 VRVREYDH 187 (272)
Q Consensus 180 ~~~~~~~~ 187 (272)
|.|.....
T Consensus 118 l~V~~a~~ 125 (129)
T 2kxn_B 118 IRVDFSIT 125 (129)
T ss_dssp CEESCCSS
T ss_pred EEEEEecC
Confidence 55555444
No 258
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.1e-14 Score=98.53 Aligned_cols=77 Identities=19% Similarity=0.187 Sum_probs=67.4
Q ss_pred CCCccceEEEcCCCCCCCHHHHHHHHHhc--CCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCcccccceeeeEEE
Q 024135 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRA--GDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (272)
Q Consensus 104 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~--G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~ 181 (272)
...+..+|||+|||..+++++|+++|.+| |.|..+.+.+ +||||+|.+.++|..|+..||+..+.| ..|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~~----g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~ 82 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIR----DYAFVHFSNREDAVEAMKALNGKVLDG----SPIE 82 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEECS----SEEEEEESSHHHHHHHHHHHSSEEETT----EEEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEeC----CeEEEEeCCHHHHHHHHHHhCCCEeCC----cEEE
Confidence 34466899999999999999999999999 8999888764 499999999999999999999999999 5677
Q ss_pred eeccccC
Q 024135 182 VREYDHR 188 (272)
Q Consensus 182 ~~~~~~~ 188 (272)
|....+.
T Consensus 83 v~~a~~~ 89 (99)
T 2cpd_A 83 VTLAKPV 89 (99)
T ss_dssp EECCCCC
T ss_pred EEECCCC
Confidence 7766554
No 259
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.60 E-value=5.8e-15 Score=98.36 Aligned_cols=71 Identities=20% Similarity=0.191 Sum_probs=64.0
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CCeEEEEeCCHHHHHHHHHHhcCccccccee
Q 024135 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (272)
Q Consensus 106 ~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~ 176 (272)
.+..+|||+|||..+++++|+++|.+||.|..+.+..+.. .+||||+|.+.++|..|++.||+..+.|+.+
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 79 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTI 79 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 3568999999999999999999999999999999987743 4699999999999999999999999999443
No 260
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.60 E-value=2e-14 Score=100.63 Aligned_cols=73 Identities=15% Similarity=0.192 Sum_probs=64.6
Q ss_pred CccceEEEcCCCCC-CCHHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCcccccceeeeEEEeec
Q 024135 106 RSEYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVRE 184 (272)
Q Consensus 106 ~~~~~~~v~nl~~~-~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~~~ 184 (272)
....+|||+|||.. +++++|+++|.+||.|..+.+ ..+||||+|.+.++|..|++.|++..+.| ..|.|..
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~V~~ 96 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV----HKGYAFVQYSNERHARAAVLGENGRVLAG----QTLDINM 96 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE----ETTEEEEECSSSHHHHHHHHHHTTCEETT----EECCEEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE----eCCEEEEEECCHHHHHHHHHHcCCCEECC----eEEEEEE
Confidence 34579999999999 999999999999999999998 45699999999999999999999999999 4555555
Q ss_pred cc
Q 024135 185 YD 186 (272)
Q Consensus 185 ~~ 186 (272)
..
T Consensus 97 a~ 98 (110)
T 1wf1_A 97 AG 98 (110)
T ss_dssp SC
T ss_pred CC
Confidence 44
No 261
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=9.2e-15 Score=100.80 Aligned_cols=76 Identities=18% Similarity=0.228 Sum_probs=64.5
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCc--ccccceeeeEEEe
Q 024135 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDS--EFRNAFSRAYVRV 182 (272)
Q Consensus 105 ~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~--~~~g~~~~~~~~~ 182 (272)
..+..+|||+|||+.+++++|+++|.+||.|..+.++.+ ++||||+|.+.++|..|++.|++. .+.|+ .|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr----~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF--KRQALVEFENIDSAKECVTFAADVPVYIAGQ----QAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHHHSCCBSSSS----BCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC--CCEEEEEECCHHHHHHHHHHhccCCceECCE----EEEE
Confidence 345689999999999999999999999999999998765 679999999999999999998764 48884 4445
Q ss_pred eccc
Q 024135 183 REYD 186 (272)
Q Consensus 183 ~~~~ 186 (272)
....
T Consensus 86 ~~a~ 89 (104)
T 1wex_A 86 NYST 89 (104)
T ss_dssp EECS
T ss_pred EEcc
Confidence 4443
No 262
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.60 E-value=9.3e-15 Score=96.88 Aligned_cols=75 Identities=16% Similarity=0.277 Sum_probs=66.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CCeEEEEeCCHHHHHHHHHHhcCcccccceeeeEEEeec
Q 024135 109 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVRE 184 (272)
Q Consensus 109 ~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~~~ 184 (272)
.+|||+|||..+++++|.++|.+||.|..+.+..+.. .+||||+|.+.++|+.|++.|||..++| ..+.+..
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g----~~l~v~~ 77 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNG----RPLRINW 77 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETT----EECEEEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCC----cEEEEEe
Confidence 5899999999999999999999999999999998854 3599999999999999999999999999 4555555
Q ss_pred ccc
Q 024135 185 YDH 187 (272)
Q Consensus 185 ~~~ 187 (272)
..+
T Consensus 78 a~~ 80 (83)
T 3md1_A 78 AAK 80 (83)
T ss_dssp CCC
T ss_pred cCc
Confidence 443
No 263
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.60 E-value=5.5e-15 Score=100.04 Aligned_cols=73 Identities=18% Similarity=0.382 Sum_probs=64.7
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecC--CCCeEEEEeCCHHHHHHHHHHhcCcccccceee
Q 024135 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG--SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (272)
Q Consensus 105 ~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~--~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~ 177 (272)
..+..+|||+|||..+++++|+++|.+||.|..+.+..+. ..+||||+|.+.++|..|++.||+..+.|+.+.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~ 79 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREID 79 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 3456899999999999999999999999999999998753 346999999999999999999999999995433
No 264
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.1e-14 Score=102.84 Aligned_cols=79 Identities=8% Similarity=0.093 Sum_probs=68.3
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHHhcCCe----eEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCcccccceeeeEEE
Q 024135 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDV----CFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (272)
Q Consensus 106 ~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i----~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~ 181 (272)
.+..+|||+|||..+++++|.++|.+||.| ..+.+......+||||+|.+.++|..|++.|++..+.| ..|.
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g----~~l~ 98 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYG----KILV 98 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSS----CBCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCC----cEEE
Confidence 456899999999999999999999999998 67777766777899999999999999999999999999 4455
Q ss_pred eeccccC
Q 024135 182 VREYDHR 188 (272)
Q Consensus 182 ~~~~~~~ 188 (272)
|......
T Consensus 99 v~~a~~~ 105 (115)
T 2cpx_A 99 IEFGKNK 105 (115)
T ss_dssp EEECCCC
T ss_pred EEEccCC
Confidence 5555443
No 265
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.60 E-value=1.5e-15 Score=118.24 Aligned_cols=77 Identities=14% Similarity=0.216 Sum_probs=67.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCe--eEEEeecC-CCCCceEEEEecChHHHHHHHHhcCCcccCCc----eEE
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPI--AHIDLKIP-PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGH----RLR 76 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v--~~v~~~~~-~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~----~i~ 76 (272)
.|+++|||+|||+.+|+++|+++|+.||.| ..+.+..+ +..+|||||+|.+.++|.+|+..|||..|.|. ++.
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~ 200 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYT 200 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEE
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceE
Confidence 367899999999999999999999999999 88888654 45569999999999999999999999999876 577
Q ss_pred EEEc
Q 024135 77 VELA 80 (272)
Q Consensus 77 v~~~ 80 (272)
|.++
T Consensus 201 vk~~ 204 (205)
T 3tyt_A 201 LKLC 204 (205)
T ss_dssp CEEE
T ss_pred EEec
Confidence 6664
No 266
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.60 E-value=1.3e-14 Score=100.72 Aligned_cols=68 Identities=18% Similarity=0.196 Sum_probs=63.1
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC---CCeEEEEeCCHHHHHHHHHHhcCccccc
Q 024135 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRN 173 (272)
Q Consensus 106 ~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~~~~~~g 173 (272)
.+..+|||+|||..+++++|.++|.+||.|..+.+..+.. .+||||+|.+.++|..|++.||+..+.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 83 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMP 83 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCC
Confidence 3568999999999999999999999999999999998864 3599999999999999999999999887
No 267
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=5.2e-15 Score=103.75 Aligned_cols=80 Identities=14% Similarity=0.167 Sum_probs=70.4
Q ss_pred CCccceEEEcCCCCCCCHHHHH---HHHHhcCCeeEEEEEecCC-------CCeEEEEeCCHHHHHHHHHHhcCcccccc
Q 024135 105 RRSEYRVLVTGLPSSASWQDLK---DHMRRAGDVCFSQVFRDGS-------GTTGIVDYTNYDDMKHAIKKLDDSEFRNA 174 (272)
Q Consensus 105 ~~~~~~~~v~nl~~~~~~~~l~---~~f~~~G~i~~~~~~~~~~-------~~~~fv~f~~~~~a~~a~~~l~~~~~~g~ 174 (272)
.....+|||+|||+.+++++|. ++|.+||.|..+.+..+.. .|||||+|.+.++|+.|++.||+..++|
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g- 90 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG- 90 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT-
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC-
Confidence 3456799999999999999999 9999999999999987753 2699999999999999999999999999
Q ss_pred eeeeEEEeeccccC
Q 024135 175 FSRAYVRVREYDHR 188 (272)
Q Consensus 175 ~~~~~~~~~~~~~~ 188 (272)
..|.|.....+
T Consensus 91 ---r~l~V~~a~~k 101 (111)
T 2cpi_A 91 ---RTLKASLGTTK 101 (111)
T ss_dssp ---EEEEEESCCCC
T ss_pred ---EEEEEEecccc
Confidence 66777766554
No 268
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=1.5e-14 Score=98.65 Aligned_cols=77 Identities=25% Similarity=0.384 Sum_probs=65.8
Q ss_pred CCCCeEEEcCCC-------CCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEE
Q 024135 4 RASRTLYVGNLP-------GDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLR 76 (272)
Q Consensus 4 ~~~~~l~v~nL~-------~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~ 76 (272)
...+.|.|.... ..+++++|+++|++||+|..|.|. +.++|||||+|.+.++|..|+..+++ +.|++|.
T Consensus 8 ~~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~--~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~ 83 (100)
T 2d9o_A 8 QGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS--SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLK 83 (100)
T ss_dssp CSSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE--SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCE
T ss_pred CccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc--cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEE
Confidence 446677777655 458999999999999999999997 47789999999999999999997555 6799999
Q ss_pred EEEccCCC
Q 024135 77 VELAHGGR 84 (272)
Q Consensus 77 v~~~~~~~ 84 (272)
|.|+....
T Consensus 84 V~~a~~~~ 91 (100)
T 2d9o_A 84 ISWLEGQP 91 (100)
T ss_dssp EECSSCCC
T ss_pred EEEccCCC
Confidence 99987654
No 269
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.60 E-value=1.2e-14 Score=108.42 Aligned_cols=78 Identities=13% Similarity=0.174 Sum_probs=68.6
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----CeEEEEeCCHHHHHHHHHHhcCcccccceeeeEEE
Q 024135 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (272)
Q Consensus 106 ~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~ 181 (272)
.+..+|||+|||..+++++|+++|.+||.|..|.++.+... +||||+|.+.++|+.|++.||+..+.| ..|.
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~ 112 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDD----RIIR 112 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETT----EECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC----eEEE
Confidence 45689999999999999999999999999999999988643 599999999999999999999999999 4555
Q ss_pred eecccc
Q 024135 182 VREYDH 187 (272)
Q Consensus 182 ~~~~~~ 187 (272)
|.+..+
T Consensus 113 V~~a~~ 118 (156)
T 1h2v_Z 113 TDWDAG 118 (156)
T ss_dssp EEEESC
T ss_pred EEECCC
Confidence 555443
No 270
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=4.7e-15 Score=100.58 Aligned_cols=76 Identities=14% Similarity=0.179 Sum_probs=64.4
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHHhcCC-eeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcC-cccccceeeeEEEee
Q 024135 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGD-VCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDD-SEFRNAFSRAYVRVR 183 (272)
Q Consensus 106 ~~~~~~~v~nl~~~~~~~~l~~~f~~~G~-i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~-~~~~g~~~~~~~~~~ 183 (272)
.+..+|||+|||.++++++|+++|.+||. |..+.+. ..+||||+|.+.++|..|++.||+ ..+.| ..+.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~~g----~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL---KSGYAFVDYPDQNWAIRAIETLSGKVELHG----KIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE---ETTEEEECCSCHHHHHHHHHHHTTTCEETT----EECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc---CCCEEEEEECCHHHHHHHHHHccCCeeECC----EEEEEE
Confidence 34579999999999999999999999999 6656553 357999999999999999999999 99999 556666
Q ss_pred ccccC
Q 024135 184 EYDHR 188 (272)
Q Consensus 184 ~~~~~ 188 (272)
...+.
T Consensus 79 ~a~~~ 83 (93)
T 2cqh_A 79 YSVSK 83 (93)
T ss_dssp ECCCC
T ss_pred EccCc
Confidence 65544
No 271
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=9.9e-15 Score=100.15 Aligned_cols=77 Identities=19% Similarity=0.255 Sum_probs=67.2
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCcccccceeeeEEEeec
Q 024135 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVRE 184 (272)
Q Consensus 105 ~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~~~ 184 (272)
..+..+|||+|||..+++++|+++|.+||.|..+.+..+ .+||||+|.+.++|..|++.|++..+.|+ .+.|..
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~--kg~afV~f~~~~~a~~a~~~l~g~~~~g~----~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD--KGFGFIRLETRTLAEIAKVELDNMPLRGK----QLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT--TTEEEEECSSSHHHHHHHHHHTTCCBTTB----CCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC--CCEEEEEECCHHHHHHHHHHhCCCEeCCc----eEEEEE
Confidence 345689999999999999999999999999999999865 57999999999999999999999999994 455554
Q ss_pred ccc
Q 024135 185 YDH 187 (272)
Q Consensus 185 ~~~ 187 (272)
..+
T Consensus 86 a~~ 88 (99)
T 2cpj_A 86 ACH 88 (99)
T ss_dssp SSC
T ss_pred cCC
Confidence 443
No 272
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.60 E-value=8.3e-15 Score=99.92 Aligned_cols=72 Identities=17% Similarity=0.170 Sum_probs=64.0
Q ss_pred CccceEEEcCCCC-CCCHHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCcccccceeeeEEE
Q 024135 106 RSEYRVLVTGLPS-SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (272)
Q Consensus 106 ~~~~~~~v~nl~~-~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~ 181 (272)
.+..+|||+|||. .+++++|.++|.+||.|..+.+. .+||||+|.+.++|..|++.|++..+.|+.+.+.+.
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 80 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVS 80 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE----TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEc
Confidence 4568999999998 99999999999999999999986 569999999999999999999999999965554443
No 273
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=1e-14 Score=97.09 Aligned_cols=70 Identities=14% Similarity=0.224 Sum_probs=63.5
Q ss_pred CCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHh-cCcccccce
Q 024135 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKL-DDSEFRNAF 175 (272)
Q Consensus 104 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l-~~~~~~g~~ 175 (272)
...+..+|||+|||..+++++|+++|.+||.|..+.+..+ .+||||+|.+.++|..|+..| ++..+.|+.
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~--kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~ 78 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR--QQCAFIQFATRQAAEVAAEKSFNKLIVNGRR 78 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG--GTEEEEEESSHHHHHHHHHTTTTTCEETTEE
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC--CCEEEEEECCHHHHHHHHHHhcCCeeECCCE
Confidence 3345689999999999999999999999999999999875 579999999999999999999 999999943
No 274
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.4e-14 Score=100.75 Aligned_cols=74 Identities=18% Similarity=0.308 Sum_probs=66.2
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CCeEEEEeCCHHHHHHHHHHhcCcccccceeee
Q 024135 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (272)
Q Consensus 105 ~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~ 178 (272)
..+..+|||+|||..+++++|.++|.+||.|..+.+..+.. .|||||+|.+.++|..|+..||+..+.|+.+.+
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 97 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 97 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEE
Confidence 34568999999999999999999999999999999998865 369999999999999999999999999954433
No 275
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=6.3e-15 Score=101.53 Aligned_cols=80 Identities=16% Similarity=0.261 Sum_probs=64.8
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCcccccceeeeEEEeec
Q 024135 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVRE 184 (272)
Q Consensus 105 ~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~~~ 184 (272)
..+..+|||+|||..+++++|+++|.+||.|..+........+||||+|.+.++|+.|++.||+..+.| ..|.|..
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEG----RAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETT----EEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCC----eEEEEEE
Confidence 345789999999999999999999999998832222122446799999999999999999999999999 5566666
Q ss_pred cccC
Q 024135 185 YDHR 188 (272)
Q Consensus 185 ~~~~ 188 (272)
..+.
T Consensus 88 a~~~ 91 (101)
T 2fc9_A 88 QGPR 91 (101)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 5444
No 276
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.59 E-value=4e-14 Score=101.26 Aligned_cols=77 Identities=18% Similarity=0.121 Sum_probs=68.1
Q ss_pred CCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecC---CCCeEEEEeCCHHHHHHHHHHhcCcccccceeeeE
Q 024135 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG---SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (272)
Q Consensus 103 ~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~---~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~ 179 (272)
.......+|||+|||..+++++|+++|.+||.|..+.+..+. ..+||||+|.+.++|..|+..||+..+.|+.+.+.
T Consensus 30 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 30 EGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 445667899999999999999999999999999999999876 44699999999999999999999999999544433
No 277
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=2.4e-14 Score=99.11 Aligned_cols=80 Identities=19% Similarity=0.169 Sum_probs=68.6
Q ss_pred CCCccceEEEcCCCCCCCHHHHHHHHHh-cCCeeEEEEEecCC---CCeEEEEeCCHHHHHHHHHHhcCcc-cccceeee
Q 024135 104 SRRSEYRVLVTGLPSSASWQDLKDHMRR-AGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSE-FRNAFSRA 178 (272)
Q Consensus 104 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~-~G~i~~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~~~~-~~g~~~~~ 178 (272)
...+..+|||+|||..+++++|+++|.+ ||.|..+.+..+.. .+||||+|.+.++|..|++.|++.. +.|+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~---- 80 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSK---- 80 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSS----
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCE----
Confidence 3345689999999999999999999999 99999999998863 3499999999999999999999999 9994
Q ss_pred EEEeecccc
Q 024135 179 YVRVREYDH 187 (272)
Q Consensus 179 ~~~~~~~~~ 187 (272)
.|.|....+
T Consensus 81 ~l~v~~a~~ 89 (104)
T 2dhg_A 81 PVRLSVAIP 89 (104)
T ss_dssp CCCCCBCCC
T ss_pred eEEEEEccC
Confidence 455554433
No 278
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.59 E-value=2.6e-15 Score=101.26 Aligned_cols=76 Identities=16% Similarity=0.264 Sum_probs=64.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhcC-CeeEEEEEecC----CCCeEEEEeCCHHHHHHHHHHhc-CcccccceeeeEEEe
Q 024135 109 YRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLD-DSEFRNAFSRAYVRV 182 (272)
Q Consensus 109 ~~~~v~nl~~~~~~~~l~~~f~~~G-~i~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~-~~~~~g~~~~~~~~~ 182 (272)
.+|||+|||.++|+++|+++|++|| .|..|.++.++ .+|||||+|.+.++|..|++.++ +..++| ..|.|
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~g----r~i~V 77 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILG----QKVSM 77 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETT----EEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECC----EEEEE
Confidence 5899999999999999999999999 89999998764 45799999999999999999874 567888 56666
Q ss_pred eccccC
Q 024135 183 REYDHR 188 (272)
Q Consensus 183 ~~~~~~ 188 (272)
....++
T Consensus 78 ~~a~~~ 83 (91)
T 2lxi_A 78 HYSDPK 83 (91)
T ss_dssp ECCCSC
T ss_pred EEcCCC
Confidence 665443
No 279
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.59 E-value=2.4e-14 Score=98.25 Aligned_cols=76 Identities=18% Similarity=0.289 Sum_probs=67.1
Q ss_pred CCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeE--------EEEEecCC----CCeEEEEeCCHHHHHHHHHHhcCcc
Q 024135 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCF--------SQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSE 170 (272)
Q Consensus 103 ~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~--------~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~~~~ 170 (272)
.+..+..+|||+|||.++++++|+++|.+||.|.. +.+..+.. .|||||+|.+.++|..|++.|||..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 34456789999999999999999999999999999 99988854 3599999999999999999999999
Q ss_pred cccceeee
Q 024135 171 FRNAFSRA 178 (272)
Q Consensus 171 ~~g~~~~~ 178 (272)
+.|+.+.+
T Consensus 88 ~~g~~l~V 95 (99)
T 2la6_A 88 FSGNPIKV 95 (99)
T ss_dssp SSSSBCEE
T ss_pred eCCcEEEE
Confidence 99955433
No 280
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.58 E-value=1.3e-14 Score=107.10 Aligned_cols=79 Identities=19% Similarity=0.229 Sum_probs=67.9
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCcccccceeeeEEEeeccc
Q 024135 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYD 186 (272)
Q Consensus 107 ~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~~~~~ 186 (272)
....|||+||++.+++++|.++|++||.|..|.++....++||||+|.+.++|+.|++.|||..|.|.. ..|.|.+.+
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g--~~L~V~~Ak 122 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNAC--CTLRIDFSK 122 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSC--SCEEEEECS
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCC--cEEEEEEec
Confidence 456899999999999999999999999999999987777789999999999999999999999996521 345555554
Q ss_pred c
Q 024135 187 H 187 (272)
Q Consensus 187 ~ 187 (272)
.
T Consensus 123 ~ 123 (164)
T 1sjr_A 123 L 123 (164)
T ss_dssp S
T ss_pred C
Confidence 4
No 281
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.58 E-value=1.1e-14 Score=100.33 Aligned_cols=74 Identities=14% Similarity=0.119 Sum_probs=65.8
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCcccccceeeeEEEeeccc
Q 024135 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYD 186 (272)
Q Consensus 107 ~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~~~~~ 186 (272)
...+|||+|||..+++++|+++|.+||.|..+.+. ...+||||+|.+.++|..|+..||+..++| ..+.|.+.+
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~V~~a~ 99 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY--PEKGCCFIKYDTHEQAAVCIVALANFPFQG----RNLRTGWGK 99 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCEETT----EECCCCBCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe--cCCCEEEEEECCHHHHHHHHHHhCCCeECC----eEEEEEecc
Confidence 45799999999999999999999999999999988 456799999999999999999999999999 455555443
No 282
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.58 E-value=1.9e-14 Score=100.16 Aligned_cols=77 Identities=18% Similarity=0.150 Sum_probs=67.8
Q ss_pred CCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC---CCeEEEEeCCHHHHHHHHHHhcCcccccceeeeE
Q 024135 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (272)
Q Consensus 103 ~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~ 179 (272)
....+..+|||+|||..+++++|+++|.+||.|..+.+..+.. .+||||+|.+.++|+.|++.||+..+.|+.+.+.
T Consensus 24 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 24 AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 4445678999999999999999999999999999999998863 3499999999999999999999999999554443
No 283
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.58 E-value=4.6e-15 Score=122.96 Aligned_cols=77 Identities=18% Similarity=0.323 Sum_probs=67.7
Q ss_pred CCCCCCeEEEcC--CCCCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccC---Cc--e
Q 024135 2 SSRASRTLYVGN--LPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFD---GH--R 74 (272)
Q Consensus 2 ~~~~~~~l~v~n--L~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~---g~--~ 74 (272)
++.|+++|||+| |+..+|+++|+++|++||+|..|.+.. .+|||||+|.+.++|++|+..|||..+. |+ .
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~---~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ 90 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP---NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 90 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT---TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceE
Confidence 568999999999 578999999999999999999988753 5799999999999999999999998883 45 5
Q ss_pred EEEEEcc
Q 024135 75 LRVELAH 81 (272)
Q Consensus 75 i~v~~~~ 81 (272)
|.|.|+.
T Consensus 91 ly~~~~~ 97 (345)
T 3tht_A 91 LYLNFVE 97 (345)
T ss_dssp CEEEECS
T ss_pred EEEEEee
Confidence 6777764
No 284
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=3e-14 Score=98.86 Aligned_cols=82 Identities=13% Similarity=0.217 Sum_probs=70.9
Q ss_pred CCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----CeEEEEeCCHHHHHHHHHHhcCcccccceeee
Q 024135 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (272)
Q Consensus 103 ~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~ 178 (272)
.......+|||+|||..+++++|+++|.+||.|..|.+..+... +||||+|.+.++|..|+.. ++..+.| .
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g----~ 85 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDG----R 85 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETT----E
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECC----E
Confidence 34456789999999999999999999999999999999988543 5999999999999999998 9999999 5
Q ss_pred EEEeeccccCC
Q 024135 179 YVRVREYDHRR 189 (272)
Q Consensus 179 ~~~~~~~~~~r 189 (272)
.|.|....+..
T Consensus 86 ~l~V~~a~~~~ 96 (105)
T 2dh8_A 86 NIDPKPCTPRG 96 (105)
T ss_dssp EEBCCCSCCSS
T ss_pred EEEEEEccCCC
Confidence 67776665443
No 285
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.58 E-value=1.9e-14 Score=97.98 Aligned_cols=78 Identities=17% Similarity=0.216 Sum_probs=68.0
Q ss_pred CCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC---CCeEEEEeCCHHHHHHHHHHhcCcccccceeeeE
Q 024135 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (272)
Q Consensus 103 ~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~ 179 (272)
....+..+|||+|||..+++++|+++|.+||.|..+.+..+.. .+||||+|.+.++|..|++.||+..+.| ..
T Consensus 11 ~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~ 86 (95)
T 2ywk_A 11 AQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYG----RP 86 (95)
T ss_dssp -CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETT----EE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECC----CE
Confidence 3445678999999999999999999999999999999998865 3599999999999999999999999999 44
Q ss_pred EEeec
Q 024135 180 VRVRE 184 (272)
Q Consensus 180 ~~~~~ 184 (272)
|.|..
T Consensus 87 l~V~~ 91 (95)
T 2ywk_A 87 INVSG 91 (95)
T ss_dssp CEEEC
T ss_pred EEEEE
Confidence 44443
No 286
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.58 E-value=1.4e-14 Score=101.44 Aligned_cols=80 Identities=14% Similarity=0.162 Sum_probs=69.1
Q ss_pred CCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CCeEEEEeCCHHHHHHHHHHhcCcccccceeeeE
Q 024135 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (272)
Q Consensus 104 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~ 179 (272)
...+..+|||+|||..+++++|.++|.+||.|..+.+..+.. .|||||+|.+.++|..|+..|||..+.| ..
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~ 97 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMG----QT 97 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETT----EE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC----cE
Confidence 345678999999999999999999999999999999987753 4699999999999999999999999999 45
Q ss_pred EEeecccc
Q 024135 180 VRVREYDH 187 (272)
Q Consensus 180 ~~~~~~~~ 187 (272)
+.|....+
T Consensus 98 l~V~~a~~ 105 (110)
T 1oo0_B 98 IQVDWCFV 105 (110)
T ss_dssp CEEEESEE
T ss_pred EEEEEccc
Confidence 55554443
No 287
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.3e-14 Score=100.82 Aligned_cols=80 Identities=21% Similarity=0.373 Sum_probs=69.3
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHHhcCCee--------EEEEEecCC----CCeEEEEeCCHHHHHHHHHHhcCcccc
Q 024135 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVC--------FSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFR 172 (272)
Q Consensus 105 ~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~--------~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~~~~~~ 172 (272)
.....+|||+|||..+++++|+++|.+||.|. .+.+..+.. .+||||+|.+.++|..|++.||+..+.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 34678999999999999999999999999998 688887743 469999999999999999999999999
Q ss_pred cceeeeEEEeeccccC
Q 024135 173 NAFSRAYVRVREYDHR 188 (272)
Q Consensus 173 g~~~~~~~~~~~~~~~ 188 (272)
| ..|.|......
T Consensus 92 g----~~l~V~~a~~~ 103 (113)
T 2cpe_A 92 G----SKLKVSLARKK 103 (113)
T ss_dssp T----EECEEECSSCC
T ss_pred C----CEEEEEECCCC
Confidence 9 56666665544
No 288
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=3.3e-14 Score=100.50 Aligned_cols=79 Identities=15% Similarity=0.244 Sum_probs=69.6
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CCeEEEEeCCHHHHHHHHHHhcCcccccceeeeEEE
Q 024135 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (272)
Q Consensus 106 ~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~ 181 (272)
....+|||+|||..+++++|+++|.+||.|..+.++.+.. .+||||+|.+.++|..|+.. ++..++| ..|.
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g----~~l~ 99 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDG----RVVE 99 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETT----EEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECC----EEEE
Confidence 4568999999999999999999999999999999998754 46999999999999999998 9999999 6677
Q ss_pred eeccccCC
Q 024135 182 VREYDHRR 189 (272)
Q Consensus 182 ~~~~~~~r 189 (272)
|....++.
T Consensus 100 V~~a~~~~ 107 (116)
T 1x4b_A 100 PKRAVARE 107 (116)
T ss_dssp EECCSSCC
T ss_pred EEECCCCc
Confidence 77665543
No 289
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.5e-14 Score=99.70 Aligned_cols=74 Identities=16% Similarity=0.242 Sum_probs=65.9
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecC---CCCeEEEEeCCHHHHHHHHHHhcCcccccceeeeEE
Q 024135 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG---SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (272)
Q Consensus 106 ~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~---~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~ 180 (272)
....+|||+|||.++++++|.++|++||.|..|.+..+. ..|||||+|.+.++|..|+. +++..++|+.+.+..
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILF 85 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 456899999999999999999999999999999999875 45799999999999999999 999999996655443
No 290
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=3e-15 Score=99.80 Aligned_cols=69 Identities=19% Similarity=0.293 Sum_probs=63.5
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CCeEEEEeCCHHHHHHHHHHhcCcccccce
Q 024135 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (272)
Q Consensus 107 ~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~ 175 (272)
+..+|||+|||..+++++|+++|.+||.|..+.+..++. .+||||+|.+.++|..|++.|||..+.|+.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 76 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQM 76 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEES
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEE
Confidence 457999999999999999999999999999999988753 569999999999999999999999999843
No 291
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=9.3e-15 Score=102.07 Aligned_cols=78 Identities=18% Similarity=0.254 Sum_probs=68.0
Q ss_pred CCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC--CCeEEEEeCCHHHHHHHHHHhcCcccccceeeeEEE
Q 024135 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS--GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (272)
Q Consensus 104 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~--~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~ 181 (272)
......+|||+|||..+++++|+++|.+||.|..+.+..+.. .|||||+|.+.++|+.|++.|+|..++| ..+.
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~ 100 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEG----RKIE 100 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETT----EECE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECC----EEEE
Confidence 344568999999999999999999999999999999987743 5799999999999999999999999999 4455
Q ss_pred eecc
Q 024135 182 VREY 185 (272)
Q Consensus 182 ~~~~ 185 (272)
|...
T Consensus 101 V~~a 104 (109)
T 2err_A 101 VNNA 104 (109)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 5444
No 292
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.58 E-value=5.3e-15 Score=100.24 Aligned_cols=77 Identities=8% Similarity=0.092 Sum_probs=65.0
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHHhcCC--eeEEEEEecCC----CCeEEEEeCCHHHHHHHHHHhcCcc----cccce
Q 024135 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGD--VCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSE----FRNAF 175 (272)
Q Consensus 106 ~~~~~~~v~nl~~~~~~~~l~~~f~~~G~--i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~~~~----~~g~~ 175 (272)
....+|||+|||+.+|+++|.++|++||. +..|.+..++. +|||||+|.+.++|..|++.||+.. ++|
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G-- 84 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG-- 84 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT--
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC--
Confidence 44579999999999999999999999995 66888887753 5699999999999999999999974 788
Q ss_pred eeeEEEeeccc
Q 024135 176 SRAYVRVREYD 186 (272)
Q Consensus 176 ~~~~~~~~~~~ 186 (272)
..+.|...+
T Consensus 85 --r~i~V~~Ak 93 (95)
T 2lkz_A 85 --KTIGVDFAK 93 (95)
T ss_dssp --EEEEEEECC
T ss_pred --EEEEEEEcc
Confidence 556665543
No 293
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=5e-14 Score=99.57 Aligned_cols=78 Identities=19% Similarity=0.196 Sum_probs=67.4
Q ss_pred CCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecC----CCCeEEEEeCCHHHHHHHHHHhcCcccccceeee
Q 024135 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (272)
Q Consensus 103 ~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~ 178 (272)
....+..+|||+|||..+++++|+++|.+||.|..+.+..+. ..+||||+|.+.++|+.|++.+++ .+.| .
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g----~ 86 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDG----R 86 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETT----E
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCC----E
Confidence 344567899999999999999999999999999999998875 356999999999999999999998 8999 4
Q ss_pred EEEeecc
Q 024135 179 YVRVREY 185 (272)
Q Consensus 179 ~~~~~~~ 185 (272)
.|.|...
T Consensus 87 ~l~V~~a 93 (116)
T 2cqd_A 87 KANVNLA 93 (116)
T ss_dssp ECEEEES
T ss_pred EEEEEEc
Confidence 4555544
No 294
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.57 E-value=2.1e-14 Score=101.83 Aligned_cols=75 Identities=21% Similarity=0.290 Sum_probs=66.4
Q ss_pred CCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CCeEEEEeCCHHHHHHHHHHhcCcccccceee
Q 024135 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (272)
Q Consensus 103 ~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~ 177 (272)
.......+|||+|||..+++++|+++|.+||.|..+.+..+.. .+||||+|.+.++|+.|++.||+..++|+.+.
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 113 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLK 113 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3345678999999999999999999999999999999987743 56999999999999999999999999995443
No 295
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.57 E-value=2.5e-14 Score=99.63 Aligned_cols=78 Identities=17% Similarity=0.230 Sum_probs=67.9
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CCeEEEEeCCHHHHHHHHHHhcCcccccceeeeEE
Q 024135 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (272)
Q Consensus 105 ~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~ 180 (272)
..+..+|||+|||..+++++|+++|.+||.|..+.+..+.. .|||||+|.+.++|..|++.|+|..+.|+ .|
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~----~l 98 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGR----PM 98 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSS----CC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCE----EE
Confidence 34568999999999999999999999999999999998754 35999999999999999999999999994 44
Q ss_pred Eeeccc
Q 024135 181 RVREYD 186 (272)
Q Consensus 181 ~~~~~~ 186 (272)
.|....
T Consensus 99 ~V~~a~ 104 (108)
T 2jrs_A 99 KVGHVT 104 (108)
T ss_dssp EEECSC
T ss_pred EEEEcc
Confidence 554443
No 296
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1.5e-14 Score=98.74 Aligned_cols=73 Identities=22% Similarity=0.335 Sum_probs=65.8
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEE-EEEecCCCCeEEEEeCCHHHHHHHHHHhcCcccccceee
Q 024135 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFS-QVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (272)
Q Consensus 105 ~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~-~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~ 177 (272)
.....+|||+|||..+++++|+++|.+||.|..+ .+..+...+.|||+|.+.++|..|+..||+..+.|+.+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 85 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLK 85 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCE
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 3456899999999999999999999999999999 588887777899999999999999999999999995433
No 297
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=1e-14 Score=102.16 Aligned_cols=71 Identities=21% Similarity=0.310 Sum_probs=63.8
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCcccccceeee
Q 024135 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (272)
Q Consensus 106 ~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~ 178 (272)
....+|||+|||..+++++|+++|.+||.|..|.+.. .++||||+|.+.++|..|+..||+..+.|+.+.+
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 78 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE--GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYL 78 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS--SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC--CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEE
Confidence 4567999999999999999999999999999998874 5679999999999999999999999999955443
No 298
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.57 E-value=2.1e-14 Score=98.00 Aligned_cols=74 Identities=15% Similarity=0.193 Sum_probs=64.6
Q ss_pred CCCccceEEEcCCCC-CCCHHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCcccccceeeeEEEe
Q 024135 104 SRRSEYRVLVTGLPS-SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 182 (272)
Q Consensus 104 ~~~~~~~~~v~nl~~-~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~ 182 (272)
...+..+|||+|||. .+++++|.++|.+||.|..+.+. .|||||+|.+.++|..|+..|||..+.| ..+.|
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~V 89 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIEXESQEMNFG----KKLIL 89 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC----SSEEEEEESSHHHHHHHHHHHTTSEETT----EECEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCEECC----EEEEE
Confidence 344678999999998 99999999999999999999984 5699999999999999999999999999 44455
Q ss_pred ecc
Q 024135 183 REY 185 (272)
Q Consensus 183 ~~~ 185 (272)
...
T Consensus 90 ~~a 92 (97)
T 2xnq_A 90 EVS 92 (97)
T ss_dssp EEC
T ss_pred Eec
Confidence 443
No 299
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.57 E-value=1.5e-14 Score=104.54 Aligned_cols=78 Identities=6% Similarity=0.128 Sum_probs=66.6
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHHhcCCeeE--EEEEecC----CCCeEEEEeCCHHHHHHHHHHhcCc----ccccc
Q 024135 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCF--SQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDS----EFRNA 174 (272)
Q Consensus 105 ~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~--~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~~~----~~~g~ 174 (272)
.....+|||+|||..+++++|+++|.+||.|.. |.++.+. .+|||||+|.+. +|..|+..||+. .+.|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 345679999999999999999999999999966 8998876 346999999999 999999999999 99994
Q ss_pred eeeeEEEeecccc
Q 024135 175 FSRAYVRVREYDH 187 (272)
Q Consensus 175 ~~~~~~~~~~~~~ 187 (272)
.|.|....+
T Consensus 99 ----~l~V~~a~~ 107 (131)
T 2m2b_A 99 ----TINVEFAKG 107 (131)
T ss_dssp ----CCCCEECCC
T ss_pred ----EEEEEECCC
Confidence 444444443
No 300
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.57 E-value=1.8e-14 Score=102.93 Aligned_cols=72 Identities=11% Similarity=0.139 Sum_probs=63.0
Q ss_pred CCccceEEEcCCCCCCCHHHHH----HHHHhcCCeeEEEEEec-CCCCeEEEEeCCHHHHHHHHHHhcCccccccee
Q 024135 105 RRSEYRVLVTGLPSSASWQDLK----DHMRRAGDVCFSQVFRD-GSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (272)
Q Consensus 105 ~~~~~~~~v~nl~~~~~~~~l~----~~f~~~G~i~~~~~~~~-~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~ 176 (272)
..+..+|||+|||+.+++++|+ ++|++||.|..|.+..+ ...|||||+|.+.++|..|+..|||..+.|+.+
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 3456899999999999999876 69999999999888654 456899999999999999999999999999543
No 301
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=8.1e-14 Score=95.18 Aligned_cols=77 Identities=13% Similarity=0.182 Sum_probs=66.8
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCcccccceeeeEEEeec
Q 024135 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVRE 184 (272)
Q Consensus 105 ~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~~~ 184 (272)
..+..+|||+|| ++++++|+++|.+||.|..+.+. ...+||||+|.+.++|..|+..|++..+.| ..+.|..
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g----~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD--PPRNCAFVTYEKMESADQAVAELNGTQVES----VQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE--TTTTEEEEEESSHHHHHHHHHHTTTEEETT----EEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec--CCCCEEEEEECCHHHHHHHHHHhCCCeECC----eEEEEEE
Confidence 345689999996 89999999999999999999884 556799999999999999999999999999 6677776
Q ss_pred cccCC
Q 024135 185 YDHRR 189 (272)
Q Consensus 185 ~~~~r 189 (272)
..+..
T Consensus 84 a~~~~ 88 (97)
T 1x5p_A 84 ARKQP 88 (97)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 65543
No 302
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=1.5e-14 Score=100.54 Aligned_cols=72 Identities=11% Similarity=0.099 Sum_probs=62.4
Q ss_pred CCccceEEEcCCCCC-CCHHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcC--cccccceeee
Q 024135 105 RRSEYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDD--SEFRNAFSRA 178 (272)
Q Consensus 105 ~~~~~~~~v~nl~~~-~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~--~~~~g~~~~~ 178 (272)
..+..+|||+|||++ +++++|.++|.+||.|..+.++.. ++||||+|.+.++|..|++.|++ ..+.|+.+.+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 96 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM--KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKV 96 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT--TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC--CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 446789999999998 999999999999999999999754 67999999999999999998864 5688954433
No 303
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.56 E-value=6.1e-15 Score=99.34 Aligned_cols=68 Identities=15% Similarity=0.183 Sum_probs=60.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhcC--CeeEEEEEecCC----CCeEEEEeCCHHHHHHHHHHhcCccccccee
Q 024135 109 YRVLVTGLPSSASWQDLKDHMRRAG--DVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (272)
Q Consensus 109 ~~~~v~nl~~~~~~~~l~~~f~~~G--~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~ 176 (272)
.+|||+|||..+++++|+++|.+|| .|..+.+..+.. .|||||+|.+.++|+.|++.|||..+.|+.+
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i 75 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNP 75 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEE
Confidence 4799999999999999999999999 999999998854 3599999999999999999999999999443
No 304
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=1.8e-14 Score=98.65 Aligned_cols=72 Identities=14% Similarity=0.166 Sum_probs=62.6
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CCeEEEEeCCHHHHHHHHHHhcCccccccee
Q 024135 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (272)
Q Consensus 105 ~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~ 176 (272)
.....+|||+|||..+++++|+++|.+||.|..+.++.+.. .+||||+|.+.++|+.|++.||+..+.|+.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 87 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKV 87 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEE
Confidence 34568999999999999999999999999998766665543 3699999999999999999999999999443
No 305
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=5.4e-14 Score=95.46 Aligned_cols=73 Identities=19% Similarity=0.276 Sum_probs=61.0
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCcccccceeeeEEEeecc
Q 024135 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREY 185 (272)
Q Consensus 107 ~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~~~~ 185 (272)
...+|||+|||..+++++|+++|.+||.|..| +.....+.||||+|.+.++|..|+. |++..++| ..+.|...
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v-~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g----~~l~V~~a 79 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV-VMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGG----HRLRVRPR 79 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE-EECSSSCCEEEEEESSHHHHHHHHT-CSCCEETT----EECCCBCS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE-EEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECC----EEEEEEEC
Confidence 34699999999999999999999999999987 3322222399999999999999999 99999999 45555544
No 306
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=4.9e-14 Score=95.09 Aligned_cols=77 Identities=16% Similarity=0.241 Sum_probs=66.5
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC---CCeEEEEeCCHHHHHHHHHHhcCcccccceeeeEEE
Q 024135 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (272)
Q Consensus 105 ~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~ 181 (272)
.....+|||+|||..+++++|+++|..| .|..+.++.+.. .|||||+|.+.++|..|+. ||+..++| ..|.
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~g----r~i~ 80 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGG----RYIE 80 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETT----EEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCC----cEEE
Confidence 3456899999999999999999999999 999999998843 3599999999999999999 99999999 4555
Q ss_pred eecccc
Q 024135 182 VREYDH 187 (272)
Q Consensus 182 ~~~~~~ 187 (272)
|.....
T Consensus 81 v~~a~~ 86 (91)
T 2dgw_A 81 VFREKS 86 (91)
T ss_dssp EEEESS
T ss_pred EEECCc
Confidence 555433
No 307
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.55 E-value=8.9e-15 Score=96.49 Aligned_cols=66 Identities=11% Similarity=0.147 Sum_probs=60.0
Q ss_pred ceEEEcCCCCCC------CHHHHHHHHHhcCCeeEEEEEec--CCCCeEEEEeCCHHHHHHHHHHhcCcccccc
Q 024135 109 YRVLVTGLPSSA------SWQDLKDHMRRAGDVCFSQVFRD--GSGTTGIVDYTNYDDMKHAIKKLDDSEFRNA 174 (272)
Q Consensus 109 ~~~~v~nl~~~~------~~~~l~~~f~~~G~i~~~~~~~~--~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~ 174 (272)
.+|||+|||..+ ++++|.++|++||.|..+.+... ...|||||+|.+.++|..|++.|||..+.|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 75 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 75 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSS
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCc
Confidence 589999999999 77999999999999999988743 3457999999999999999999999999995
No 308
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.55 E-value=1.6e-14 Score=99.26 Aligned_cols=73 Identities=21% Similarity=0.216 Sum_probs=65.8
Q ss_pred ccceEEEcCCCC------CCCHHHHHHHHHhcCCeeEEEEEecCC----CCeEEEEeCCHHHHHHHHHHhcCccccc-ce
Q 024135 107 SEYRVLVTGLPS------SASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRN-AF 175 (272)
Q Consensus 107 ~~~~~~v~nl~~------~~~~~~l~~~f~~~G~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~~~~~~g-~~ 175 (272)
.+.+|||+|||. ++++++|.++|++||.|..+.++.+.. .|||||+|.+.++|..|++.|||..+.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 357999999999 999999999999999999999998865 4699999999999999999999999998 65
Q ss_pred eeeE
Q 024135 176 SRAY 179 (272)
Q Consensus 176 ~~~~ 179 (272)
+.+.
T Consensus 85 l~V~ 88 (100)
T 3ns6_A 85 LFLY 88 (100)
T ss_dssp CEEE
T ss_pred EEEE
Confidence 5443
No 309
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.55 E-value=1.4e-15 Score=105.01 Aligned_cols=69 Identities=23% Similarity=0.446 Sum_probs=58.5
Q ss_pred cCCCCCCCHHHHHHHh------------hccCCeeEEEeecC--CCCCceEEEEecChHHHHHHHHhcCCcccCCceEEE
Q 024135 12 GNLPGDIREREVEDLF------------YKYGPIAHIDLKIP--PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (272)
Q Consensus 12 ~nL~~~~t~~~l~~~F------------~~~G~v~~v~~~~~--~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v 77 (272)
.||+..+++++|.++| ++||+|..|.|..+ ++++|||||+|.++++|.+|+..|||..|.|+.|.|
T Consensus 21 ~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v 100 (104)
T 1jmt_A 21 DGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHA 100 (104)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCE
T ss_pred CCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEE
Confidence 3444455666666555 99999999999653 567999999999999999999999999999999999
Q ss_pred EEc
Q 024135 78 ELA 80 (272)
Q Consensus 78 ~~~ 80 (272)
.|+
T Consensus 101 ~~s 103 (104)
T 1jmt_A 101 ELS 103 (104)
T ss_dssp EEC
T ss_pred EEc
Confidence 986
No 310
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.55 E-value=1.8e-13 Score=96.95 Aligned_cols=76 Identities=9% Similarity=0.077 Sum_probs=64.5
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCe-EEEEeCCHHHHHHHHHHhcCcccccceeeeEEEeeccc
Q 024135 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTT-GIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYD 186 (272)
Q Consensus 108 ~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~-~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~~~~~ 186 (272)
...|||+||++.+++++|.++|++||.|..|.++.. .|| |||+|.+.++|..|++.|||..|.|.. ..+.|...+
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~--~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~--~~l~V~~Ak 100 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR--NGIQAMVEFESVLCAQKAKAALNGADIYAGC--CTLKIEYAR 100 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES--SSEEEEEEESSHHHHHHHHHHHTTCCCBTTB--SEEEEECCS
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEecCCC--eEEEEEEec
Confidence 456789999999999999999999999999999764 376 999999999999999999999998732 345565554
Q ss_pred c
Q 024135 187 H 187 (272)
Q Consensus 187 ~ 187 (272)
.
T Consensus 101 ~ 101 (124)
T 2e5i_A 101 P 101 (124)
T ss_dssp C
T ss_pred C
Confidence 3
No 311
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.55 E-value=1.4e-14 Score=102.09 Aligned_cols=78 Identities=26% Similarity=0.345 Sum_probs=67.7
Q ss_pred CCCCeEEEcCCCC--CC---CHHHHHHHhhccCCeeEEEeecC-------CCCCceEEEEecChHHHHHHHHhcCCcccC
Q 024135 4 RASRTLYVGNLPG--DI---REREVEDLFYKYGPIAHIDLKIP-------PRPPGYAFVEFEEARDAEDAIRGRDGYDFD 71 (272)
Q Consensus 4 ~~~~~l~v~nL~~--~~---t~~~l~~~F~~~G~v~~v~~~~~-------~~~~g~afV~f~~~~~a~~a~~~l~g~~~~ 71 (272)
.|+++|+|.|+-. ++ -+++|+++|++||+|.+|.|..+ +.++|+|||+|.+.++|.+|+..|||..|.
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 4899999999942 22 36889999999999999999543 235699999999999999999999999999
Q ss_pred CceEEEEEcc
Q 024135 72 GHRLRVELAH 81 (272)
Q Consensus 72 g~~i~v~~~~ 81 (272)
|+.|.|.++.
T Consensus 98 GR~i~v~~~~ 107 (118)
T 3ue2_A 98 GRKVVAEVYD 107 (118)
T ss_dssp TEECEEEEEC
T ss_pred CcEEEEEEcC
Confidence 9999999975
No 312
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=2e-13 Score=94.25 Aligned_cols=80 Identities=21% Similarity=0.328 Sum_probs=67.5
Q ss_pred CCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CCeEEEEeCCHHHHHHHHHHhcCcccccceeee
Q 024135 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (272)
Q Consensus 103 ~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~ 178 (272)
....+..+|||+|||..+++++|+++|.+||.|..+.++.+.. .+||||+|.+.++|..|+.. +..++| .
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g----~ 83 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--RHMIDG----R 83 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS--CEEETT----E
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc--CCeeCC----e
Confidence 3345568999999999999999999999999999999998864 35999999999999999994 667888 5
Q ss_pred EEEeeccccC
Q 024135 179 YVRVREYDHR 188 (272)
Q Consensus 179 ~~~~~~~~~~ 188 (272)
.|.|.....+
T Consensus 84 ~l~v~~a~~~ 93 (103)
T 2cqg_A 84 WCDCKLPNSK 93 (103)
T ss_dssp EEEEECCCTT
T ss_pred EEEEEecCCC
Confidence 6666665544
No 313
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.54 E-value=4e-14 Score=95.09 Aligned_cols=75 Identities=17% Similarity=0.320 Sum_probs=66.3
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CCeEEEEeCCHHHHHHHHHHhcCcccccceeeeEEEee
Q 024135 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVR 183 (272)
Q Consensus 108 ~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~~ 183 (272)
..+|||+|||..+++++|+++|.+||.|..+.+..+.. .+||||+|.+.++|..|+ .||+..+.| ..+.|.
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g----~~l~V~ 80 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRG----RQIKVI 80 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETT----EECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECC----cEEEEE
Confidence 57999999999999999999999999999999998753 469999999999999999 999999999 555665
Q ss_pred cccc
Q 024135 184 EYDH 187 (272)
Q Consensus 184 ~~~~ 187 (272)
..+.
T Consensus 81 ~a~~ 84 (89)
T 3ucg_A 81 PKRT 84 (89)
T ss_dssp ETTT
T ss_pred EccC
Confidence 5543
No 314
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.54 E-value=3.8e-14 Score=94.80 Aligned_cols=70 Identities=17% Similarity=0.285 Sum_probs=62.2
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CCeEEEEeCCHHHHHHHHHHhcCcccccce
Q 024135 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (272)
Q Consensus 105 ~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~ 175 (272)
..+..+|||+|||..+++++|.++|.+||.|..+.++.+.. .|||||+|.+.++|..|++ +++..++|+.
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~ 81 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRV 81 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEE
Confidence 34568999999999999999999999999999999998865 4599999999999999996 5788899943
No 315
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.54 E-value=5.7e-14 Score=99.09 Aligned_cols=73 Identities=18% Similarity=0.214 Sum_probs=65.2
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecC-CCCeEEEEeCCHHHHHHHHHHhcCcccccceeee
Q 024135 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG-SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (272)
Q Consensus 106 ~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~-~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~ 178 (272)
.+..+|||+|||..+++++|.++|..||.|..+.+..+. ..|||||+|.+.++|..|+..|||..+.|+.+.+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 79 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVV 79 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 456799999999999999999999999999999998764 4579999999999999999999999999954433
No 316
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.54 E-value=2.9e-14 Score=99.72 Aligned_cols=77 Identities=18% Similarity=0.226 Sum_probs=66.8
Q ss_pred CCCCeEEEcCCCCCCC----------HHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCc
Q 024135 4 RASRTLYVGNLPGDIR----------EREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGH 73 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t----------~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~ 73 (272)
.|+++|.|.|+-.... +++|+++|++||.|.+|.|..+ .++|+|||+|.+.++|.+|+..|||..|.|+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~-~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR 83 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKN-SAQGNVYVKCPSIAAAIAAVNALHGRWFAGK 83 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTT-CTTCCEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecC-CCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 5789999999944322 2468999999999999998654 3589999999999999999999999999999
Q ss_pred eEEEEEcc
Q 024135 74 RLRVELAH 81 (272)
Q Consensus 74 ~i~v~~~~ 81 (272)
.|.|.|+.
T Consensus 84 ~i~v~~~~ 91 (114)
T 3s6e_A 84 MITAAYVP 91 (114)
T ss_dssp ECEEEEEC
T ss_pred EEEEEEEc
Confidence 99999985
No 317
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.54 E-value=5e-15 Score=107.41 Aligned_cols=113 Identities=11% Similarity=0.098 Sum_probs=62.0
Q ss_pred ceEEEEecChHHHHHHHHhcCCcccCCceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCccceEEEcCCCCCCCHHHH
Q 024135 46 GYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDL 125 (272)
Q Consensus 46 g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l 125 (272)
++||.+|.-++.+..++..+... +.|...--.. .............+|||+|||+++++++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~-~gg~~~g~~~-----------------g~~~~~~~~~~~~~lfV~nLp~~~te~dL 63 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASM-TGGQQMGRGS-----------------GDSEFTVQSTTGHCVHMRGLPYKATENDI 63 (139)
T ss_dssp -------------------------------------------------------------CCCCEECCSCCTTCCHHHH
T ss_pred CcccccccCccccchhcccchhc-cCCCCCCCCC-----------------CCcccCCCCCCCCEEEEeCCCCCCCHHHH
Confidence 57888888888777776654432 2222110000 00011123345679999999999999999
Q ss_pred HHHHHhcCCeeEEEEEecCC---CCeEEEEeCCHHHHHHHHHHhcCcccccceeee
Q 024135 126 KDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (272)
Q Consensus 126 ~~~f~~~G~i~~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~ 178 (272)
+++|.+|| |..|.++.++. +|||||+|.+.++|++|+ .+|+..++|+.+.+
T Consensus 64 ~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V 117 (139)
T 2hgn_A 64 YNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIEL 117 (139)
T ss_dssp HHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCC
T ss_pred HHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEE
Confidence 99999999 77899887754 569999999999999999 79999999965444
No 318
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2e-14 Score=99.91 Aligned_cols=64 Identities=19% Similarity=0.209 Sum_probs=58.5
Q ss_pred CccceEEE--cCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCccc
Q 024135 106 RSEYRVLV--TGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEF 171 (272)
Q Consensus 106 ~~~~~~~v--~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~ 171 (272)
.+..+||| +||+..+++++|+++|.+||.|..+.+..+ ++||||+|.+.++|++|++.|||.++
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~--rgfaFV~f~~~~~A~~Ai~~lnG~~~ 88 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN--KPYSFARYRTTEESKRAYVTLNGKEV 88 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT--CSCEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCEE
Confidence 45678999 779999999999999999999999888653 67999999999999999999999988
No 319
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2.7e-14 Score=98.86 Aligned_cols=71 Identities=25% Similarity=0.360 Sum_probs=64.5
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CCeEEEEeCCHHHHHHHHHHhcCccccccee
Q 024135 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (272)
Q Consensus 106 ~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~ 176 (272)
.+..+|||+|||..+++++|+++|.+||.|..+.+..+.. .|||||+|.+.++|..|++.||+..+.|+.+
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 80 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRAL 80 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCB
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEE
Confidence 4567999999999999999999999999999999998854 3599999999999999999999999999543
No 320
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=5.6e-14 Score=92.84 Aligned_cols=70 Identities=19% Similarity=0.277 Sum_probs=59.3
Q ss_pred cceEEEcCCCCCCCHHH----HHHHHHhcC-CeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCcccccceeeeEEEe
Q 024135 108 EYRVLVTGLPSSASWQD----LKDHMRRAG-DVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 182 (272)
Q Consensus 108 ~~~~~v~nl~~~~~~~~----l~~~f~~~G-~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~ 182 (272)
.+.|||+|||+.+++++ |.++|.+|| .|..| .+|+|||.|.+.++|..|++.|+|.++.| ..|.+
T Consensus 9 ~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V------tgG~AfV~F~~~esA~~A~~~l~G~~l~g----r~i~v 78 (96)
T 2diu_A 9 HTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI------TGCSAILRFINQDSAERAQKRMENEDVFG----NRIIV 78 (96)
T ss_dssp SEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC------CTTCEEEEESSHHHHHHHHHHHTTCCSSS----SCCEE
T ss_pred ceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE------ecCEEEEEECCHHHHHHHHHHhcCCccCC----ceEEE
Confidence 34499999999999888 558999995 99888 34899999999999999999999999999 55555
Q ss_pred ecccc
Q 024135 183 REYDH 187 (272)
Q Consensus 183 ~~~~~ 187 (272)
.....
T Consensus 79 ~~A~~ 83 (96)
T 2diu_A 79 SFTPK 83 (96)
T ss_dssp ESSCC
T ss_pred EecCC
Confidence 55444
No 321
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.3e-14 Score=102.19 Aligned_cols=76 Identities=18% Similarity=0.246 Sum_probs=66.8
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CCeEEEEeCCHHHHHHHHHHhcCcccccceeeeEE
Q 024135 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (272)
Q Consensus 105 ~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~ 180 (272)
.....+|||+|||..+++++|+++|.+||.|..|.+..+.. .+||||+|.+.++|..|+ .||+..+.| ..|
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g----~~l 96 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLG----VPI 96 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETT----EEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCC----eEE
Confidence 34567999999999999999999999999999999987654 469999999999999999 999999999 455
Q ss_pred Eeecc
Q 024135 181 RVREY 185 (272)
Q Consensus 181 ~~~~~ 185 (272)
.|...
T Consensus 97 ~V~~a 101 (114)
T 2cq4_A 97 IVQAS 101 (114)
T ss_dssp EEEEH
T ss_pred EEEec
Confidence 55544
No 322
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.53 E-value=2.2e-14 Score=97.87 Aligned_cols=79 Identities=13% Similarity=0.174 Sum_probs=66.5
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCcccccceeeeEEEeec
Q 024135 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVRE 184 (272)
Q Consensus 105 ~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~~~ 184 (272)
..+..+|||+|||..+++++|+++|.+||.|..+ .......|||||+|.+.++|..|+..|++..+.| ..|.|..
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDG----RSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETT----EEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC----eEEEEEE
Confidence 3467899999999999999999999999998877 3333455799999999999999999999999999 5566665
Q ss_pred cccC
Q 024135 185 YDHR 188 (272)
Q Consensus 185 ~~~~ 188 (272)
..++
T Consensus 88 a~~~ 91 (96)
T 1fjc_A 88 TGEK 91 (96)
T ss_dssp CSSS
T ss_pred cCCC
Confidence 5443
No 323
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.53 E-value=5.9e-14 Score=97.93 Aligned_cols=78 Identities=17% Similarity=0.252 Sum_probs=65.3
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CCeEEEEeCCHHHHHHHHHHhcCcccccceeeeEEE
Q 024135 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (272)
Q Consensus 106 ~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~ 181 (272)
....+|||+|||..+++++|+++|.+||.|..+.+..+.. .|||||+|.+.++|..|+..+ +..++| ..+.
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g----~~l~ 97 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDS----KTID 97 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETT----EEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCC----EEEE
Confidence 4568999999999999999999999999999999988753 569999999999999999976 488999 5556
Q ss_pred eeccccC
Q 024135 182 VREYDHR 188 (272)
Q Consensus 182 ~~~~~~~ 188 (272)
|.....+
T Consensus 98 V~~a~~~ 104 (109)
T 2rs2_A 98 PKVAFPR 104 (109)
T ss_dssp EEECCCC
T ss_pred EEEccCC
Confidence 6555443
No 324
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.53 E-value=5.3e-14 Score=104.44 Aligned_cols=70 Identities=14% Similarity=0.084 Sum_probs=62.9
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHHhcC--CeeEEEEEecCCC----CeEEEEeCCHHHHHHHHHHhcCccccccee
Q 024135 107 SEYRVLVTGLPSSASWQDLKDHMRRAG--DVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (272)
Q Consensus 107 ~~~~~~v~nl~~~~~~~~l~~~f~~~G--~i~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~ 176 (272)
...+|||+|||..+++++|.++|..|| .|..|.++.+... |||||+|.+.++|..|++.|||..++|+.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l 129 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKV 129 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEe
Confidence 457999999999999999999999999 9999999988543 599999999999999999999999999443
No 325
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=5.5e-14 Score=97.29 Aligned_cols=75 Identities=16% Similarity=0.142 Sum_probs=64.4
Q ss_pred CCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeE-EEEEecC---CCCeEEEEeCCHHHHHHHHHHhcCcccccceeee
Q 024135 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCF-SQVFRDG---SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (272)
Q Consensus 103 ~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~-~~~~~~~---~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~ 178 (272)
+......+|||+|||+.+++++|+++|.+||.|.. +.+..+. ..|||||+|.+.++|+.|+.. ++..++|+.+.+
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v 88 (104)
T 1wg5_A 10 PDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEI 88 (104)
T ss_dssp SSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEE
Confidence 34456789999999999999999999999999987 7777653 357999999999999999997 999999965444
No 326
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.53 E-value=5.5e-14 Score=100.56 Aligned_cols=76 Identities=17% Similarity=0.309 Sum_probs=66.6
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CCeEEEEeCCHHHHHHHHHHhcCcccccceeeeEEEe
Q 024135 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 182 (272)
Q Consensus 107 ~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~ 182 (272)
...+|||+|||..+++++|+++|.+||.|..+.+..+.. .+||||+|.+.++|..|+ .||+..+.| ..|.|
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g----~~l~V 109 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRG----RTIKV 109 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETT----EECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECC----eEEEE
Confidence 467999999999999999999999999999999988743 459999999999999999 799999999 55566
Q ss_pred ecccc
Q 024135 183 REYDH 187 (272)
Q Consensus 183 ~~~~~ 187 (272)
...+.
T Consensus 110 ~~a~~ 114 (124)
T 2jwn_A 110 LPKRT 114 (124)
T ss_dssp EESSC
T ss_pred EECCC
Confidence 55543
No 327
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.53 E-value=2.5e-14 Score=97.77 Aligned_cols=79 Identities=15% Similarity=0.215 Sum_probs=66.8
Q ss_pred CCccceEEEcCCCCCCCHHHHH----HHHHhcCCeeEEEEEec-CCCCeEEEEeCCHHHHHHHHHHhcCcccccceeeeE
Q 024135 105 RRSEYRVLVTGLPSSASWQDLK----DHMRRAGDVCFSQVFRD-GSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (272)
Q Consensus 105 ~~~~~~~~v~nl~~~~~~~~l~----~~f~~~G~i~~~~~~~~-~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~ 179 (272)
..+..+|||+|||..+++++|+ ++|.+||.|..+.+... ...|||||+|.+.++|..|+..|||..+.| ..
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~ 80 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYD----KP 80 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETT----EE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECC----cE
Confidence 3456899999999999999999 99999999999988743 345799999999999999999999999999 45
Q ss_pred EEeecccc
Q 024135 180 VRVREYDH 187 (272)
Q Consensus 180 ~~~~~~~~ 187 (272)
+.+....+
T Consensus 81 l~v~~a~~ 88 (97)
T 1nu4_A 81 MRIQYAKT 88 (97)
T ss_dssp CEEEECSS
T ss_pred EEEEEccC
Confidence 55554443
No 328
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=7.6e-14 Score=96.07 Aligned_cols=74 Identities=14% Similarity=0.201 Sum_probs=63.2
Q ss_pred CCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC---CCeEEEEeCCHHHHHHHHHHhcCcccccceeeeE
Q 024135 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (272)
Q Consensus 104 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~ 179 (272)
......+|||+|||+++++++|+++|.+||. ..|.++.++. ++||||+|.+.++|+.|++ +|+..++|+.+.+.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELF 87 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 3455689999999999999999999999994 4899988864 3599999999999999995 79999999655443
No 329
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.52 E-value=5e-14 Score=97.67 Aligned_cols=77 Identities=12% Similarity=0.165 Sum_probs=65.4
Q ss_pred ccceEEEcCCCCCC------CHHHHHHHHHhcCCeeEEEEEec--CCCCeEEEEeCCHHHHHHHHHHhcCcccccceeee
Q 024135 107 SEYRVLVTGLPSSA------SWQDLKDHMRRAGDVCFSQVFRD--GSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (272)
Q Consensus 107 ~~~~~~v~nl~~~~------~~~~l~~~f~~~G~i~~~~~~~~--~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~ 178 (272)
...+|||+|||..+ ++++|.++|++||.|..+.+... ...|||||+|.+.++|..|+..|||..+.|+ .
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~---~ 90 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ---H 90 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT---C
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC---c
Confidence 45799999999999 78999999999999999998833 3457999999999999999999999999994 0
Q ss_pred EEEeeccc
Q 024135 179 YVRVREYD 186 (272)
Q Consensus 179 ~~~~~~~~ 186 (272)
.+.|....
T Consensus 91 ~l~V~~a~ 98 (105)
T 2nlw_A 91 TFRVNLFT 98 (105)
T ss_dssp EEEEECSC
T ss_pred eEEEEEcc
Confidence 45555443
No 330
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.52 E-value=2.6e-14 Score=97.23 Aligned_cols=70 Identities=14% Similarity=0.164 Sum_probs=61.4
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CCeEEEEeCCHHHHHHHHHHhcCcccccce
Q 024135 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (272)
Q Consensus 106 ~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~ 175 (272)
.+..+|||+|||..+++++|+++|.+||.|..+.++.+.. .+||||+|.+.++|+.|++.||+..+.|+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 86 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRK 86 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcE
Confidence 3458999999999999999999999999998777776543 359999999999999999999999999943
No 331
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.52 E-value=1.6e-14 Score=99.27 Aligned_cols=72 Identities=17% Similarity=0.350 Sum_probs=61.3
Q ss_pred CCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecC-----CCCeEEEEeCCHHHHHHHHHHhcCcccccceee
Q 024135 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG-----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (272)
Q Consensus 104 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~-----~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~ 177 (272)
......+|||+|||.++++++|+++|.+|| |..+.+..+. ..|||||+|.+.++|..|+ .|++..++|+.+.
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~ 91 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIR 91 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEE
Confidence 345678999999999999999999999999 9999998775 3579999999999999999 8999999995433
No 332
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.51 E-value=1.6e-13 Score=100.26 Aligned_cols=73 Identities=21% Similarity=0.185 Sum_probs=65.8
Q ss_pred CCCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecC----CCCeEEEEeCCHHHHHHHHHHhcCcccccce
Q 024135 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (272)
Q Consensus 103 ~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~ 175 (272)
....+..+|||+|||..+++++|+++|.+||.|..+.+..++ ..+||||+|.+.++|..|++.||+..+.|+.
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 134 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRT 134 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 445567899999999999999999999999999999998774 3579999999999999999999999999943
No 333
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=2.7e-13 Score=95.46 Aligned_cols=81 Identities=15% Similarity=0.249 Sum_probs=68.3
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC---CCeEEEEeCCHHHHHHHHHHhcCcccccce----eee
Q 024135 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAF----SRA 178 (272)
Q Consensus 106 ~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~----~~~ 178 (272)
....+|||+|||..+++++|+++|.+||.|..+.+..+.. .+||||+|.+.++|..|++.|||..+.+.. ...
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 4568999999999999999999999999999999998863 359999999999999999999999997643 124
Q ss_pred EEEeeccc
Q 024135 179 YVRVREYD 186 (272)
Q Consensus 179 ~~~~~~~~ 186 (272)
.+.+....
T Consensus 103 ~l~v~~a~ 110 (114)
T 1x5o_A 103 PLLCKFSG 110 (114)
T ss_dssp CBEEEECC
T ss_pred ceeEEccC
Confidence 45555443
No 334
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.51 E-value=2.1e-13 Score=103.43 Aligned_cols=78 Identities=18% Similarity=0.127 Sum_probs=69.0
Q ss_pred CCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecC---CCCeEEEEeCCHHHHHHHHHHhcCcccccceeeeEE
Q 024135 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG---SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (272)
Q Consensus 104 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~---~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~ 180 (272)
...+..+|||+|||..+++++|+++|.+||.|..|.+..+. ..+||||+|.+.++|..|++.||+..+.|+.+.+.+
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34567899999999999999999999999999999998875 346999999999999999999999999996665554
Q ss_pred E
Q 024135 181 R 181 (272)
Q Consensus 181 ~ 181 (272)
.
T Consensus 164 a 164 (177)
T 2f3j_A 164 V 164 (177)
T ss_dssp E
T ss_pred e
Confidence 4
No 335
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=9.6e-14 Score=96.47 Aligned_cols=71 Identities=21% Similarity=0.291 Sum_probs=62.6
Q ss_pred CCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC---CCeEEEEeCCHHHHHHHHHHhcCccccccee
Q 024135 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (272)
Q Consensus 104 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~ 176 (272)
......+|||+|||+++++++|+++|..| .|..|.++.+.. .|||||+|.+.++|.+|+ .+|+..++|+.+
T Consensus 12 ~~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i 85 (109)
T 2dnn_A 12 INPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYV 85 (109)
T ss_dssp CCHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEE
Confidence 34456899999999999999999999999 899999987753 579999999999999999 699999999543
No 336
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.51 E-value=2.7e-14 Score=92.71 Aligned_cols=66 Identities=20% Similarity=0.311 Sum_probs=60.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CCeEEEEeCCHHHHHHHHHHhcCccccccee
Q 024135 110 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (272)
Q Consensus 110 ~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~ 176 (272)
+|||+|||..+++++|+++|++||.|..+.+..++. .|||||+|.+.++|+.|++ +++..++|+..
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l 70 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMV 70 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEE
Confidence 489999999999999999999999999999987753 4699999999999999998 99999999543
No 337
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.51 E-value=4.7e-14 Score=114.13 Aligned_cols=80 Identities=23% Similarity=0.262 Sum_probs=70.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec--CCCCCceEEEEecChHHHHHHHHhcCC-cccC---CceEEE
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDG-YDFD---GHRLRV 77 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~g-~~~~---g~~i~v 77 (272)
.+.++|||+|||+.+|+++|.++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+..||+ ..+. +++|.|
T Consensus 94 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 94 THGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred ccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 4678999999999999999999999999999999854 567789999999999999999999954 4444 999999
Q ss_pred EEccCC
Q 024135 78 ELAHGG 83 (272)
Q Consensus 78 ~~~~~~ 83 (272)
.++...
T Consensus 174 ~~~~~~ 179 (261)
T 3sde_A 174 EPMEQF 179 (261)
T ss_dssp EECCCE
T ss_pred eecccc
Confidence 998754
No 338
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=2.7e-14 Score=93.17 Aligned_cols=69 Identities=16% Similarity=0.275 Sum_probs=62.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CCeEEEEeCCHHHHHHHHHHhcCcccccceeee
Q 024135 109 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (272)
Q Consensus 109 ~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~ 178 (272)
++|||+|||..+++++|+++|++||.|..+.+..++. .|||||+|.+.++|..|+..++ ..++|+...+
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v 73 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDP 73 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEE
Confidence 3799999999999999999999999999999988754 4699999999999999999999 9999965443
No 339
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.50 E-value=1.1e-13 Score=92.52 Aligned_cols=67 Identities=19% Similarity=0.318 Sum_probs=61.3
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHHhc----C-------CeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCcccccc
Q 024135 106 RSEYRVLVTGLPSSASWQDLKDHMRRA----G-------DVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNA 174 (272)
Q Consensus 106 ~~~~~~~v~nl~~~~~~~~l~~~f~~~----G-------~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~ 174 (272)
.+..+|||+|||.++++++|+++|.+| | .|..+.+..+ ++||||+|.+.++|..|+ .||+..+.|+
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~--kg~afV~f~~~~~a~~A~-~l~g~~~~g~ 80 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD--KNFAFLEFRSVDETTQAM-AFDGIIFQGQ 80 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS--SSEEEEEESSHHHHHHHG-GGTTCEETTE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC--CcEEEEEcCCHHHHHHHH-hcCCCEECCe
Confidence 456899999999999999999999999 8 8998888765 679999999999999999 9999999994
Q ss_pred e
Q 024135 175 F 175 (272)
Q Consensus 175 ~ 175 (272)
.
T Consensus 81 ~ 81 (87)
T 2hzc_A 81 S 81 (87)
T ss_dssp E
T ss_pred E
Confidence 4
No 340
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=8.7e-14 Score=97.17 Aligned_cols=77 Identities=14% Similarity=0.236 Sum_probs=65.5
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHHhcCC-eeEEEEE-ec----CCCCeEEEEeCCHHHHHHHHHHhc--Ccccccceeee
Q 024135 107 SEYRVLVTGLPSSASWQDLKDHMRRAGD-VCFSQVF-RD----GSGTTGIVDYTNYDDMKHAIKKLD--DSEFRNAFSRA 178 (272)
Q Consensus 107 ~~~~~~v~nl~~~~~~~~l~~~f~~~G~-i~~~~~~-~~----~~~~~~fv~f~~~~~a~~a~~~l~--~~~~~g~~~~~ 178 (272)
+..+|||+|||..+++++|.++|.+||. |..+.+. .+ ...+||||+|.+.++|..|+..|+ +..+.|+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~---- 82 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH---- 82 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTB----
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCC----
Confidence 4679999999999999999999999998 9999887 44 345799999999999999999996 5899994
Q ss_pred EEEeecccc
Q 024135 179 YVRVREYDH 187 (272)
Q Consensus 179 ~~~~~~~~~ 187 (272)
.+.|....+
T Consensus 83 ~l~V~~a~~ 91 (109)
T 2dis_A 83 QIAVDWAEP 91 (109)
T ss_dssp CCEEEESCS
T ss_pred eEEEEEcCC
Confidence 455555443
No 341
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.50 E-value=1.6e-13 Score=97.64 Aligned_cols=79 Identities=19% Similarity=0.230 Sum_probs=66.5
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCe-EEEEeCCHHHHHHHHHHhcCcccccceeeeEEEeec
Q 024135 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTT-GIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVRE 184 (272)
Q Consensus 106 ~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~-~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~~~ 184 (272)
.....|||+||++.+++++|.++|++||.|..|.+.... ++| |||+|.+.++|..|++.|||..+.|.. ..+++..
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~--~~LrI~~ 102 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-NQFQALLQYADPVSAQHAKLSLDGQNIYNAC--CTLRIDF 102 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-TEEEEEEEESCHHHHHHHHHHHTTCEEETTE--EEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-CCcEEEEEECCHHHHHHHHHHcCCCeecCCC--cEEEEEe
Confidence 345678899999999999999999999999999888765 456 999999999999999999999998832 3455555
Q ss_pred ccc
Q 024135 185 YDH 187 (272)
Q Consensus 185 ~~~ 187 (272)
.+.
T Consensus 103 ak~ 105 (130)
T 3zzy_A 103 SKL 105 (130)
T ss_dssp CSC
T ss_pred cCC
Confidence 443
No 342
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=7.1e-14 Score=98.39 Aligned_cols=73 Identities=14% Similarity=0.141 Sum_probs=63.7
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHHhcCCe-eEEEEEecC---CCCeEEEEeCCHHHHHHHHHHhcCcccccceeee
Q 024135 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDV-CFSQVFRDG---SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (272)
Q Consensus 105 ~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i-~~~~~~~~~---~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~ 178 (272)
..+..+|||+|||..+++++|+++|..||.| ..|.++.+. ..|||||+|.+.++|..|++. |+..+.|+.+.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v 88 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFV 88 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEE
Confidence 3456899999999999999999999999999 888888775 346999999999999999997 999999954433
No 343
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.50 E-value=1.1e-13 Score=92.81 Aligned_cols=77 Identities=10% Similarity=0.097 Sum_probs=58.9
Q ss_pred CCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCcccccceeeeEEEee
Q 024135 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVR 183 (272)
Q Consensus 104 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~~ 183 (272)
...+.++|||+|||+++++++|+++|++||.|..+.++.+ .+|||||+|.+.++|. .+++..+.+.. ..+.+.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-srGfaFV~F~~~~~A~----~~~~~~~~~~g--~~v~v~ 79 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-FRAFAFVTFADDKVAQ----SLCGEDLIIKG--ISVHIS 79 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-CCSEEEEEESCHHHHH----HHTTCEEEETT--EEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-CCCEEEEEECCHHHHH----HHcCCCcccCC--EEEEEE
Confidence 3456789999999999999999999999999999999876 6789999999999988 35665554211 455555
Q ss_pred cccc
Q 024135 184 EYDH 187 (272)
Q Consensus 184 ~~~~ 187 (272)
...+
T Consensus 80 ~a~~ 83 (89)
T 3d2w_A 80 NAEP 83 (89)
T ss_dssp ECC-
T ss_pred EcCC
Confidence 5443
No 344
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=3.6e-13 Score=92.84 Aligned_cols=78 Identities=19% Similarity=0.303 Sum_probs=63.8
Q ss_pred CCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CCeEEEEeCCHHHHHHHHHHhcCcccccceeeeE
Q 024135 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (272)
Q Consensus 104 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~ 179 (272)
...+..+|||+|||..+++++|+++|..|+ .+.++.+.. .+||||+|.+.++|..|++.||+..+.| ..
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~ 83 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDG----NK 83 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETT----EE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECC----eE
Confidence 345678999999999999999999999875 455555543 3599999999999999999999999999 55
Q ss_pred EEeeccccC
Q 024135 180 VRVREYDHR 188 (272)
Q Consensus 180 ~~~~~~~~~ 188 (272)
|.|....+.
T Consensus 84 l~V~~a~~~ 92 (102)
T 2fc8_A 84 VTLDWAKPK 92 (102)
T ss_dssp CEEEECCCC
T ss_pred EEEEEecCC
Confidence 666655544
No 345
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.49 E-value=6.7e-14 Score=93.78 Aligned_cols=72 Identities=22% Similarity=0.319 Sum_probs=63.8
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCcccccceeeeEEEeecc
Q 024135 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREY 185 (272)
Q Consensus 107 ~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~~~~ 185 (272)
...+|||+|||..+++++|+++|.+| .|..+.+. ...|||||+|.+.++|..|++.||+..+.| ..+.|...
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g----~~l~V~~a 75 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD--RNKRTAFVTLLNGEQAQNAIQMFHQYSFRG----KDLIVQLQ 75 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE--GGGTEEEECCSCHHHHHHHHHHHTTEEETT----EEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe--CCCcEEEEEECCHHHHHHHHHHhCCCeECC----cEEEEEEc
Confidence 35789999999999999999999999 99999885 567899999999999999999999999999 45555544
No 346
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.48 E-value=1.5e-13 Score=94.53 Aligned_cols=77 Identities=14% Similarity=0.194 Sum_probs=62.9
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHHhcCCeeEE---EEEecCCCCeEEEEeCCHHHHHHHHHHhcCcccccceeeeEEEe
Q 024135 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFS---QVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 182 (272)
Q Consensus 106 ~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~---~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~ 182 (272)
....+|||+|||..+++++|+++|.+||.|... ........|||||+|.+.++|..|++ ||+..+.| ..|.|
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g----~~l~V 89 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFG----NEIKL 89 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTT----BCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECC----cEEEE
Confidence 356799999999999999999999999987651 11233567899999999999999999 99999999 45555
Q ss_pred ecccc
Q 024135 183 REYDH 187 (272)
Q Consensus 183 ~~~~~ 187 (272)
....+
T Consensus 90 ~~a~~ 94 (101)
T 1fj7_A 90 EKPKG 94 (101)
T ss_dssp ECCSC
T ss_pred EEcCC
Confidence 55443
No 347
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.48 E-value=2e-13 Score=96.62 Aligned_cols=74 Identities=22% Similarity=0.293 Sum_probs=64.8
Q ss_pred CCCccceEEEcCCCCCCCHHHHHHHHHhcCC---eeEEEEEecCC---CCeEEEEeCCHHHHHHHHHHhcCcccccceee
Q 024135 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGD---VCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (272)
Q Consensus 104 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~---i~~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~ 177 (272)
......+|||+|||+++++++|+++|..||. |..|.+..+.. .|||||+|.+.++|+.|++ +|+..++|+.+.
T Consensus 13 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 13 EGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp CBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 3445689999999999999999999999998 88999988765 3599999999999999999 999999995444
Q ss_pred e
Q 024135 178 A 178 (272)
Q Consensus 178 ~ 178 (272)
+
T Consensus 92 V 92 (118)
T 2db1_A 92 V 92 (118)
T ss_dssp E
T ss_pred E
Confidence 3
No 348
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.48 E-value=3.9e-14 Score=95.38 Aligned_cols=70 Identities=24% Similarity=0.319 Sum_probs=63.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CCeEEEEeCCHHHHHHHHHHhcCcccccceeeeE
Q 024135 109 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (272)
Q Consensus 109 ~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~ 179 (272)
.+|||+|||..+++++|+++|++||.|..+.+..+.. .|||||+|.+.+ |..|+..|||..++|+.+.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~ 75 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVT 75 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEE
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEE
Confidence 4799999999999999999999999999999987753 569999999999 999999999999999655443
No 349
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=1.6e-13 Score=98.14 Aligned_cols=76 Identities=21% Similarity=0.251 Sum_probs=62.8
Q ss_pred CCCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEe-cCC---CCeEEEEeCCHHHHHHHHHHhcCcccccceeeeE
Q 024135 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFR-DGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (272)
Q Consensus 104 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~-~~~---~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~ 179 (272)
+.....+|||+|||+.+++++|.++|..||.|..+.++. ... .|||||+|.+.++|..|++ ||+..++|+.+.+.
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 344568999999999999999999999999998744433 332 4599999999999999999 99999999665544
Q ss_pred E
Q 024135 180 V 180 (272)
Q Consensus 180 ~ 180 (272)
.
T Consensus 100 ~ 100 (124)
T 1wel_A 100 P 100 (124)
T ss_dssp E
T ss_pred E
Confidence 3
No 350
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.47 E-value=1.4e-13 Score=99.39 Aligned_cols=75 Identities=19% Similarity=0.249 Sum_probs=65.4
Q ss_pred CCCCccceEEEcCCCCCCCHHHHHHHHHhcCC---eeEEEEEecCC---CCeEEEEeCCHHHHHHHHHHhcCccccccee
Q 024135 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGD---VCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (272)
Q Consensus 103 ~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~---i~~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~ 176 (272)
+......+|||+|||+++|+++|+++|.+||. |..|.+..+.. +|||||+|.+.++|+.|++ +|+..++|+.+
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i 117 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYI 117 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEE
Confidence 34456789999999999999999999999999 88899988765 3599999999999999999 99999999544
Q ss_pred ee
Q 024135 177 RA 178 (272)
Q Consensus 177 ~~ 178 (272)
.+
T Consensus 118 ~V 119 (136)
T 2hgl_A 118 EV 119 (136)
T ss_dssp EE
T ss_pred EE
Confidence 33
No 351
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.47 E-value=1.1e-13 Score=96.34 Aligned_cols=75 Identities=11% Similarity=0.194 Sum_probs=65.1
Q ss_pred CCCccceEEEcCCCCCCCHHHHHHHHHhcCC---eeEEEEEecCC---CCeEEEEeCCHHHHHHHHHHhcCcccccceee
Q 024135 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGD---VCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (272)
Q Consensus 104 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~---i~~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~ 177 (272)
......+|||+|||+++++++|+++|..||. |..|.+..+.. .|||||+|.+.++|..|+. +++..++|+.+.
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 3345689999999999999999999999998 88999987754 4699999999999999999 999999996554
Q ss_pred eE
Q 024135 178 AY 179 (272)
Q Consensus 178 ~~ 179 (272)
+.
T Consensus 86 V~ 87 (107)
T 2lmi_A 86 VY 87 (107)
T ss_dssp CE
T ss_pred EE
Confidence 43
No 352
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=1.3e-13 Score=92.33 Aligned_cols=74 Identities=11% Similarity=0.159 Sum_probs=60.0
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCccc--ccceeeeEEEeec
Q 024135 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEF--RNAFSRAYVRVRE 184 (272)
Q Consensus 107 ~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~--~g~~~~~~~~~~~ 184 (272)
+..+|||+|||.++++++|+++|.+||.|..+.+..+ ..+||||+|.+.++|+.| ++..+ .| ..+.+..
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~~----~~~~~~~~g----~~l~v~~ 74 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-FRAFAFVTFADDQIAQSL----CGEDLIIKG----ISVHISN 74 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-CCSCCEEECSCHHHHHHT----TTCEEEETT----EEEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-CCCEEEEEECCHHHHHHH----hcCCceeCC----EEEEEEe
Confidence 4579999999999999999999999999999999876 677999999999999753 44444 45 5666666
Q ss_pred cccCC
Q 024135 185 YDHRR 189 (272)
Q Consensus 185 ~~~~r 189 (272)
..++.
T Consensus 75 a~~~~ 79 (88)
T 1wf0_A 75 AEPKH 79 (88)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 55443
No 353
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.46 E-value=2.7e-13 Score=99.45 Aligned_cols=79 Identities=15% Similarity=0.120 Sum_probs=65.5
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHHhcCCeeE--------EEEE-ecCCCCeEEEEeCCHHHHHHHHHHhcCccccccee
Q 024135 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCF--------SQVF-RDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (272)
Q Consensus 106 ~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~--------~~~~-~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~ 176 (272)
.+..+|||+|||..+++++|.++|.+||.|.. +.+. .....|||||+|.+.++|..|+..|||..+.|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g--- 119 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFG--- 119 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETT---
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCC---
Confidence 45689999999999999999999999998865 3333 34566799999999999999999999999999
Q ss_pred eeEEEeeccccC
Q 024135 177 RAYVRVREYDHR 188 (272)
Q Consensus 177 ~~~~~~~~~~~~ 188 (272)
..|.|...+..
T Consensus 120 -~~l~V~~a~~~ 130 (143)
T 3egn_A 120 -KPMVVQFARSA 130 (143)
T ss_dssp -EECEEEECCCS
T ss_pred -cEEEEEECCCC
Confidence 55566555443
No 354
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.46 E-value=9e-14 Score=90.17 Aligned_cols=67 Identities=12% Similarity=0.199 Sum_probs=59.9
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecC----CCCeEEEEeCCHHHHHHHHHHhcCcccccceee
Q 024135 110 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (272)
Q Consensus 110 ~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~ 177 (272)
+|||+|||..+++++|+++|++||.|..+.+..+. ..|||||+|.+.++|..|++. ++..+.|+...
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~ 71 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCE 71 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEE
Confidence 58999999999999999999999999999998764 357999999999999999995 88899995543
No 355
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.45 E-value=2.3e-13 Score=107.52 Aligned_cols=74 Identities=14% Similarity=0.152 Sum_probs=65.0
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHHhcC--CeeEEEEEecCCC----CeEEEEeCCHHHHHHHHHHhcCcccccceeeeEE
Q 024135 107 SEYRVLVTGLPSSASWQDLKDHMRRAG--DVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (272)
Q Consensus 107 ~~~~~~v~nl~~~~~~~~l~~~f~~~G--~i~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~ 180 (272)
...+|||+||+..+++++|+++|.+|| .|..|.|+.+... +||||+|.+.++|.+||+.||+..|.|+.+.+.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 457899999999999999999999999 9999999988643 5999999999999999999999999996554433
No 356
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.45 E-value=3.7e-13 Score=95.55 Aligned_cols=75 Identities=13% Similarity=0.184 Sum_probs=64.1
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCcccccceeeeEEEeec
Q 024135 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVRE 184 (272)
Q Consensus 105 ~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~~~ 184 (272)
..+..+|||+|| ++++++|+++|.+||.|..|.+. ...+||||+|.+.++|..|++.||+..+.|+ .+.|..
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~--~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~----~l~V~~ 107 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD--PPRNCAFVTYEKMESADQAVAELNGTQVESV----QLKVNI 107 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCBCSSC----BCEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe--CCCCEEEEEECCHHHHHHHHHHhCCCEECCe----EEEEEE
Confidence 345789999996 69999999999999999999886 5667999999999999999999999999994 445554
Q ss_pred ccc
Q 024135 185 YDH 187 (272)
Q Consensus 185 ~~~ 187 (272)
...
T Consensus 108 a~~ 110 (121)
T 2bz2_A 108 ARK 110 (121)
T ss_dssp CCS
T ss_pred eCC
Confidence 443
No 357
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.43 E-value=4.3e-13 Score=95.39 Aligned_cols=74 Identities=11% Similarity=0.197 Sum_probs=62.5
Q ss_pred CCCccceEEEcCCCCCCCHHHHHHHHHhcCCee--EEEEEecCC---CCeEEEEeCCHHHHHHHHHHhcCcccccceeee
Q 024135 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVC--FSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (272)
Q Consensus 104 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~--~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~ 178 (272)
......+|||+|||+++++++|+++|.+| .|. .|.++.++. +|||||+|.+.++|++|++. ++..++|+.+.+
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V 115 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIEV 115 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEE
Confidence 33456789999999999999999999999 676 888887654 57999999999999999995 779999965544
Q ss_pred E
Q 024135 179 Y 179 (272)
Q Consensus 179 ~ 179 (272)
.
T Consensus 116 ~ 116 (126)
T 2hgm_A 116 F 116 (126)
T ss_dssp E
T ss_pred E
Confidence 3
No 358
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.13 E-value=1.5e-14 Score=102.20 Aligned_cols=78 Identities=18% Similarity=0.282 Sum_probs=66.9
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHHhcCCeeE--------EEEEecC----CCCeEEEEeCCHHHHHHHHHHhcCccccc
Q 024135 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCF--------SQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRN 173 (272)
Q Consensus 106 ~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~--------~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~~~~~~g 173 (272)
.+..+|||+|||..+++++|+++|.+||.|.. +.+..+. ..+||||+|.+.++|..|+..||+..+.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 34679999999999999999999999999988 7787764 35699999999999999999999999999
Q ss_pred ceeeeEEEeecccc
Q 024135 174 AFSRAYVRVREYDH 187 (272)
Q Consensus 174 ~~~~~~~~~~~~~~ 187 (272)
..|.|....+
T Consensus 85 ----~~l~V~~a~~ 94 (116)
T 2lcw_A 85 ----NPIKVSFATR 94 (116)
Confidence 4555555443
No 359
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=6e-13 Score=94.42 Aligned_cols=72 Identities=11% Similarity=0.117 Sum_probs=61.8
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHHhcCCe----eEEEEEecCC---CCeEEEEeCCHHHHHHHHHHhcCcccccceeee
Q 024135 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDV----CFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (272)
Q Consensus 106 ~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i----~~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~ 178 (272)
....+|||+|||+++++++|+++|.+||.| ..|.++.+.. +|||||+|.+.++|++|++. |+..++|+.+.+
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 345799999999999999999999999975 5788887753 35999999999999999996 999999954443
No 360
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.38 E-value=1.1e-12 Score=90.40 Aligned_cols=71 Identities=17% Similarity=0.279 Sum_probs=62.5
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC---CCeEEEEeCCHHHHHHHHHHhcCcccccceee
Q 024135 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (272)
Q Consensus 105 ~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~ 177 (272)
.....+|||+|||..+++++|.++|.+||.|..+.+..+.. .|||||+|.+.++|..|+. ++..++|....
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~ 79 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLK 79 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEE
Confidence 34568999999999999999999999999999999998863 2599999999999999999 88888885443
No 361
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=6.8e-13 Score=93.32 Aligned_cols=61 Identities=15% Similarity=0.212 Sum_probs=53.7
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEec-------CCCCeEEEEeCCHHHHHHHHHHhc
Q 024135 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD-------GSGTTGIVDYTNYDDMKHAIKKLD 167 (272)
Q Consensus 106 ~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~-------~~~~~~fv~f~~~~~a~~a~~~l~ 167 (272)
....+|||+|||.++++++|+++|.+||.|. +.++.+ ...|||||+|.+.++|+.|++.|+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~ 73 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL 73 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh
Confidence 3457999999999999999999999999999 666654 345799999999999999999983
No 362
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=9.7e-12 Score=87.06 Aligned_cols=79 Identities=16% Similarity=0.269 Sum_probs=64.2
Q ss_pred CCccceEEEcCCCCCCC-----------HHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCccccc
Q 024135 105 RRSEYRVLVTGLPSSAS-----------WQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRN 173 (272)
Q Consensus 105 ~~~~~~~~v~nl~~~~~-----------~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g 173 (272)
..+..+|+|.||..... +++|+++|.+||.|..+.|......|||||+|.+.++|..|+..|||..++|
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 91 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGG 91 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETT
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 34578999999944332 5899999999999999977544567899999999999999999999999999
Q ss_pred ceeeeEEEeecccc
Q 024135 174 AFSRAYVRVREYDH 187 (272)
Q Consensus 174 ~~~~~~~~~~~~~~ 187 (272)
..|.+....+
T Consensus 92 ----r~l~v~~a~~ 101 (112)
T 2dit_A 92 ----RQITAQAWDG 101 (112)
T ss_dssp ----EECEEEECCS
T ss_pred ----cEEEEEEeCC
Confidence 4555555433
No 363
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.37 E-value=1.6e-12 Score=90.92 Aligned_cols=70 Identities=11% Similarity=0.206 Sum_probs=60.5
Q ss_pred ceEEEcCC----CCCCCHHHHHHHHHhcCCeeEEEEEecCCCC----eEEEEeCC----HHH----HHHHHH--HhcCcc
Q 024135 109 YRVLVTGL----PSSASWQDLKDHMRRAGDVCFSQVFRDGSGT----TGIVDYTN----YDD----MKHAIK--KLDDSE 170 (272)
Q Consensus 109 ~~~~v~nl----~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~----~~fv~f~~----~~~----a~~a~~--~l~~~~ 170 (272)
..|||+|| |+.+++.+|+++|+.||+|..+.++.|+.+| ||||+|.+ +++ |..|+. .++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999998774 99999996 433 888988 789999
Q ss_pred cccceeee
Q 024135 171 FRNAFSRA 178 (272)
Q Consensus 171 ~~g~~~~~ 178 (272)
++|+.+++
T Consensus 83 I~Gr~irV 90 (136)
T 2j8a_A 83 IMGFKFEV 90 (136)
T ss_dssp ETTEEEEE
T ss_pred ecCcEEEE
Confidence 99944433
No 364
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.35 E-value=6.4e-12 Score=86.64 Aligned_cols=73 Identities=14% Similarity=0.175 Sum_probs=61.6
Q ss_pred CccceEEEcCCCC-----CCCHHHHHHHHHhcCCeeEEEEEecC-----CCCeEEEEeCCHHHHHHHHHHhcCcccccce
Q 024135 106 RSEYRVLVTGLPS-----SASWQDLKDHMRRAGDVCFSQVFRDG-----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (272)
Q Consensus 106 ~~~~~~~v~nl~~-----~~~~~~l~~~f~~~G~i~~~~~~~~~-----~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~ 175 (272)
.+..+|+|.|+.. +.++++|+++|++||.|..+.+..++ ..|||||+|.+.++|.+|++.|||..++|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3567999999863 23789999999999999999999864 3579999999999999999999999999954
Q ss_pred eee
Q 024135 176 SRA 178 (272)
Q Consensus 176 ~~~ 178 (272)
+.+
T Consensus 86 i~v 88 (105)
T 2pe8_A 86 VKA 88 (105)
T ss_dssp CEE
T ss_pred EEE
Confidence 443
No 365
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.35 E-value=1.9e-12 Score=101.99 Aligned_cols=65 Identities=14% Similarity=0.248 Sum_probs=60.2
Q ss_pred CCccceEEEcCCCCCC---------CHHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCccc
Q 024135 105 RRSEYRVLVTGLPSSA---------SWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEF 171 (272)
Q Consensus 105 ~~~~~~~~v~nl~~~~---------~~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~ 171 (272)
.....+|||+||+..+ ++++|.++|.+||.|..|.|+.+ +|||||+|.+.++|+.|++.|+|..+
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~--kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES--KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG--GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC--CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4467899999999998 79999999999999999999864 57999999999999999999999999
No 366
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=6.2e-12 Score=87.89 Aligned_cols=75 Identities=17% Similarity=0.222 Sum_probs=66.5
Q ss_pred CCCCeEEEcCCCCC-CCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecC-hHHHHHHHHhcC--CcccCCceEEEEE
Q 024135 4 RASRTLYVGNLPGD-IREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEE-ARDAEDAIRGRD--GYDFDGHRLRVEL 79 (272)
Q Consensus 4 ~~~~~l~v~nL~~~-~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~-~~~a~~a~~~l~--g~~~~g~~i~v~~ 79 (272)
.+.+.|||+||++. ++.++|+++|+.||+|..|.+..+. ..|||.|.+ +++|..|+..|| +..|.|..+.++.
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~---~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ev 92 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA---KEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEV 92 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC---SEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC---CEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEE
Confidence 46789999999999 9999999999999999999997543 369999999 899999999995 7889999999887
Q ss_pred cc
Q 024135 80 AH 81 (272)
Q Consensus 80 ~~ 81 (272)
..
T Consensus 93 L~ 94 (121)
T 1owx_A 93 LE 94 (121)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 367
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.32 E-value=3.1e-11 Score=92.76 Aligned_cols=71 Identities=17% Similarity=0.272 Sum_probs=61.6
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC---CCeEEEEeCCHHHHHHHHHHhcCcccccceeee
Q 024135 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (272)
Q Consensus 107 ~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~ 178 (272)
...+|||+|||.++++++|.++|.+||.|..|.+..+.. .|||||+|.+.++|..|+..++ ..++|+.+.+
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V 181 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLI 181 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEE
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEE
Confidence 457999999999999999999999999999999998654 3699999999999999998665 5899954433
No 368
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.28 E-value=2.8e-11 Score=79.25 Aligned_cols=76 Identities=16% Similarity=0.252 Sum_probs=63.2
Q ss_pred CCCCCeEEEcCCCC----CCCH----HHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCce
Q 024135 3 SRASRTLYVGNLPG----DIRE----REVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHR 74 (272)
Q Consensus 3 ~~~~~~l~v~nL~~----~~t~----~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~ 74 (272)
+-|--||+|.-.+. +.-. .+|.+.|.+||+|..+++.. +.+||+|.+.++|.+|+. |||..+.|+.
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~-----d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~ 77 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVE-----DKMWVTFLEGSSALNVLS-LNGKELLNRT 77 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECS-----SSEEEEESSHHHHHHGGG-GTTCEETTEE
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEec-----CCEEEEECChHHHHHHHh-cCCeEeCCeE
Confidence 45667888876652 3334 56899999999999999974 349999999999999999 9999999999
Q ss_pred EEEEEccCCC
Q 024135 75 LRVELAHGGR 84 (272)
Q Consensus 75 i~v~~~~~~~ 84 (272)
|+|+++.+..
T Consensus 78 LkV~lkt~dW 87 (91)
T 2dnr_A 78 ITIALKSPSG 87 (91)
T ss_dssp EEEEECCCSS
T ss_pred EEEEeCCCCc
Confidence 9999987544
No 369
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.23 E-value=1.6e-11 Score=101.87 Aligned_cols=67 Identities=16% Similarity=0.155 Sum_probs=59.5
Q ss_pred CCCccceEEEcC--CCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCcccc
Q 024135 104 SRRSEYRVLVTG--LPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR 172 (272)
Q Consensus 104 ~~~~~~~~~v~n--l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~ 172 (272)
...+..+|||+| |+..+++++|+++|.+||.|..+.+.. .++||||+|.+.++|++|++.|||.++.
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~--~kgfaFV~f~~~~~A~~Ai~~lnG~~~~ 82 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVV 82 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT--TCSEEEEEESSHHHHHHHHHHTTTCEEE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCccc
Confidence 345678999999 578999999999999999999887754 5689999999999999999999999884
No 370
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.22 E-value=4.3e-11 Score=82.51 Aligned_cols=73 Identities=18% Similarity=0.196 Sum_probs=60.4
Q ss_pred ccceEEEcCC--CCCCC--------HHHHHHHHHhcCCeeEEEEEecC------CCCeEEEEeCCHHHHHHHHHHhcCcc
Q 024135 107 SEYRVLVTGL--PSSAS--------WQDLKDHMRRAGDVCFSQVFRDG------SGTTGIVDYTNYDDMKHAIKKLDDSE 170 (272)
Q Consensus 107 ~~~~~~v~nl--~~~~~--------~~~l~~~f~~~G~i~~~~~~~~~------~~~~~fv~f~~~~~a~~a~~~l~~~~ 170 (272)
+...|.+.|+ +..+. +++|++.|++||.|..+.+..+. ..|+|||+|.+.++|.+|+..|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4568888887 33332 47899999999999999998774 35799999999999999999999999
Q ss_pred cccceeeeE
Q 024135 171 FRNAFSRAY 179 (272)
Q Consensus 171 ~~g~~~~~~ 179 (272)
++|+.+.+.
T Consensus 84 f~GR~i~v~ 92 (105)
T 3v4m_A 84 FANRVVVTK 92 (105)
T ss_dssp ETTEECEEE
T ss_pred eCCCEEEEE
Confidence 999655443
No 371
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.19 E-value=1.2e-10 Score=81.19 Aligned_cols=74 Identities=12% Similarity=0.090 Sum_probs=61.2
Q ss_pred ccceEEEcCCCCCC----------CHHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCccccccee
Q 024135 107 SEYRVLVTGLPSSA----------SWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (272)
Q Consensus 107 ~~~~~~v~nl~~~~----------~~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~ 176 (272)
+..+|.+.|+-... .+++|++.|++||.|..+.+..+...|+|||+|.+.++|.+|++.|||..++|+.+
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i 85 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMI 85 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 45678888863221 25788999999999999999888778999999999999999999999999999655
Q ss_pred eeEE
Q 024135 177 RAYV 180 (272)
Q Consensus 177 ~~~~ 180 (272)
.+..
T Consensus 86 ~v~~ 89 (114)
T 3s6e_A 86 TAAY 89 (114)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5443
No 372
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.18 E-value=8.5e-11 Score=82.59 Aligned_cols=74 Identities=12% Similarity=0.144 Sum_probs=61.3
Q ss_pred ccceEEEcCCCC--C---CCHHHHHHHHHhcCCeeEEEEEecCC--------CCeEEEEeCCHHHHHHHHHHhcCccccc
Q 024135 107 SEYRVLVTGLPS--S---ASWQDLKDHMRRAGDVCFSQVFRDGS--------GTTGIVDYTNYDDMKHAIKKLDDSEFRN 173 (272)
Q Consensus 107 ~~~~~~v~nl~~--~---~~~~~l~~~f~~~G~i~~~~~~~~~~--------~~~~fv~f~~~~~a~~a~~~l~~~~~~g 173 (272)
+..+|++.|+-. + -.+++|++.|.+||.|..|.|..+.. .|++||+|.+.++|.+|+..|||..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 457888999732 2 24789999999999999999988753 2699999999999999999999999999
Q ss_pred ceeeeEE
Q 024135 174 AFSRAYV 180 (272)
Q Consensus 174 ~~~~~~~ 180 (272)
+.+.+..
T Consensus 99 R~i~v~~ 105 (118)
T 3ue2_A 99 RKVVAEV 105 (118)
T ss_dssp EECEEEE
T ss_pred cEEEEEE
Confidence 6655443
No 373
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.16 E-value=1.7e-10 Score=80.62 Aligned_cols=76 Identities=14% Similarity=0.202 Sum_probs=65.6
Q ss_pred CCCCccceEEEcCCCCC-CCHHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCC-HHHHHHHHHHhc--Ccccccceeee
Q 024135 103 VSRRSEYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTN-YDDMKHAIKKLD--DSEFRNAFSRA 178 (272)
Q Consensus 103 ~~~~~~~~~~v~nl~~~-~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~-~~~a~~a~~~l~--~~~~~g~~~~~ 178 (272)
....++..|+|+||+.. ++.++|+++|++||.|.+|.+..+.. .|||.|.+ ..+|..|+.+++ +..|.|...+.
T Consensus 13 ~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~--tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ 90 (121)
T 1owx_A 13 LEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK--EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTW 90 (121)
T ss_dssp CSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS--EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEE
T ss_pred ccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC--EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEE
Confidence 44567899999999999 99999999999999999999988876 69999999 899999999994 67788855444
Q ss_pred EE
Q 024135 179 YV 180 (272)
Q Consensus 179 ~~ 180 (272)
.+
T Consensus 91 ev 92 (121)
T 1owx_A 91 EV 92 (121)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 374
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=4.2e-10 Score=76.55 Aligned_cols=65 Identities=11% Similarity=0.118 Sum_probs=52.7
Q ss_pred CCCCCHHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCcccccceeeeEEEeeccccC
Q 024135 117 PSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYDHR 188 (272)
Q Consensus 117 ~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~~~~~~~~~ 188 (272)
+..+++++|+++|.+||.|..|.+. ....|||||+|.+.++|..|++.+++ +.| ..|.|.+....
T Consensus 26 ~~~~te~~L~~~F~~~G~V~~v~i~-~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g----~~l~V~~a~~~ 90 (100)
T 2d9o_A 26 KGGYSKDVLLRLLQKYGEVLNLVLS-SKKPGTAVVEFATVKAAELAVQNEVG--LVD----NPLKISWLEGQ 90 (100)
T ss_dssp CCSCCHHHHHHHHHTTSCEEEEEEE-SSSSSEEEEEESCHHHHHHHHHTCCB--CSS----SBCEEECSSCC
T ss_pred CCCCCHHHHHHHHHhcCCEEEEEEc-cCCCCEEEEEECCHHHHHHHHHhcCC--CCC----CeEEEEEccCC
Confidence 3568999999999999999999988 45678999999999999999998655 445 45556655443
No 375
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.13 E-value=2.3e-11 Score=83.75 Aligned_cols=66 Identities=21% Similarity=0.256 Sum_probs=54.6
Q ss_pred EcCCCCCCCHHHHHHHH------------HhcCCeeEEEEEecCC---CCeEEEEeCCHHHHHHHHHHhcCcccccceee
Q 024135 113 VTGLPSSASWQDLKDHM------------RRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (272)
Q Consensus 113 v~nl~~~~~~~~l~~~f------------~~~G~i~~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~ 177 (272)
+.||+..+++++|+++| ++||.|..+.+..+.. .|||||+|.+.++|.+|+..|||..++|+.+.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 45667777777776666 9999999999998753 57999999999999999999999999995543
Q ss_pred e
Q 024135 178 A 178 (272)
Q Consensus 178 ~ 178 (272)
+
T Consensus 100 v 100 (104)
T 1jmt_A 100 A 100 (104)
T ss_dssp E
T ss_pred E
Confidence 3
No 376
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.09 E-value=3.1e-10 Score=74.59 Aligned_cols=72 Identities=17% Similarity=0.240 Sum_probs=60.8
Q ss_pred CCCCCeEEEcCCCCC-----CCH----HHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCc
Q 024135 3 SRASRTLYVGNLPGD-----IRE----REVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGH 73 (272)
Q Consensus 3 ~~~~~~l~v~nL~~~-----~t~----~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~ 73 (272)
+-|--||+|.-++.. +-. .+|.+.|..||+|..+++..+ -+||+|.+.++|.+|+. |||..+.|+
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d-----~~fVtF~d~~sAl~AI~-ldG~~v~Gr 85 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG-----QMLVTFADSHSALSVLD-VDGMKVKGR 85 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT-----EEEEECSCSHHHHHHHH-GGGSEETTE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC-----cEEEEEcChHHHHHHHh-cCCeeeCCe
Confidence 456778999877643 222 558999999999999999854 39999999999999999 999999999
Q ss_pred eEEEEEc
Q 024135 74 RLRVELA 80 (272)
Q Consensus 74 ~i~v~~~ 80 (272)
.|+|.+.
T Consensus 86 ~L~V~~k 92 (95)
T 1ufw_A 86 AVKISGP 92 (95)
T ss_dssp EEEEECC
T ss_pred EEEEecc
Confidence 9999874
No 377
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.96 E-value=1.2e-09 Score=85.86 Aligned_cols=76 Identities=25% Similarity=0.313 Sum_probs=62.4
Q ss_pred CCeEEEcCCCC-----CCCHHHHHHHhhccCCeeEEEeec-------CCCCCceEEEEecChHHHHHHHHhcCCcccCCc
Q 024135 6 SRTLYVGNLPG-----DIREREVEDLFYKYGPIAHIDLKI-------PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGH 73 (272)
Q Consensus 6 ~~~l~v~nL~~-----~~t~~~l~~~F~~~G~v~~v~~~~-------~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~ 73 (272)
+..+.+.|+-. .-.+++|.+.|++||.|..+.+.. ++.++|++||+|.+.++|.+|+..|||..|.|+
T Consensus 124 s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr 203 (222)
T 3dxb_A 124 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 203 (222)
T ss_dssp CSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCe
Confidence 44455555422 234578999999999999999953 236789999999999999999999999999999
Q ss_pred eEEEEEcc
Q 024135 74 RLRVELAH 81 (272)
Q Consensus 74 ~i~v~~~~ 81 (272)
.|.|.+..
T Consensus 204 ~i~~~~~~ 211 (222)
T 3dxb_A 204 KVVAEVYD 211 (222)
T ss_dssp BCEEEECC
T ss_pred EEEEEEcC
Confidence 99999974
No 378
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.88 E-value=8.3e-09 Score=67.51 Aligned_cols=69 Identities=19% Similarity=0.146 Sum_probs=55.4
Q ss_pred ccceEEEcCCCC----CCCH----HHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCcccccceeee
Q 024135 107 SEYRVLVTGLPS----SASW----QDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (272)
Q Consensus 107 ~~~~~~v~nl~~----~~~~----~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~ 178 (272)
+..+|+|..++. ++-. .+|.+.|.+||.|..+.+..+ .+||+|.+.++|..|++ |||..+.|+..++
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d----~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV 80 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED----KMWVTFLEGSSALNVLS-LNGKELLNRTITI 80 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS----SEEEEESSHHHHHHGGG-GTTCEETTEEEEE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC----CEEEEECChHHHHHHHh-cCCeEeCCeEEEE
Confidence 456777766552 3333 779999999999999999988 59999999999999998 9999999954444
Q ss_pred EE
Q 024135 179 YV 180 (272)
Q Consensus 179 ~~ 180 (272)
.+
T Consensus 81 ~l 82 (91)
T 2dnr_A 81 AL 82 (91)
T ss_dssp EE
T ss_pred Ee
Confidence 33
No 379
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.77 E-value=5.9e-08 Score=65.02 Aligned_cols=70 Identities=16% Similarity=0.163 Sum_probs=64.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcc-----CCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEE
Q 024135 6 SRTLYVGNLPGDIREREVEDLFYKY-----GPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (272)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~-----G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~ 78 (272)
.++|-|-|||-.+++..|+.|++.+ |.|..|.+..+ -+-|+|+|.+...|.+|.-.|+|..|.|+.|+|.
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD---H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD---FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT---TTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC---CCceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 6899999999999999999999999 99999999754 3579999999999999998899999999999985
No 380
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.72 E-value=5.2e-08 Score=64.04 Aligned_cols=66 Identities=9% Similarity=0.152 Sum_probs=55.3
Q ss_pred CccceEEEcCCCCC-----CCH----HHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCccccccee
Q 024135 106 RSEYRVLVTGLPSS-----ASW----QDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (272)
Q Consensus 106 ~~~~~~~v~nl~~~-----~~~----~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~ 176 (272)
++..+|+|..++.. +.+ .+|.+.|.+||+|..+.+..+ -+||+|.+.++|..|++ |||.+++|+..
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d----~~fVtF~d~~sAl~AI~-ldG~~v~Gr~L 87 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG----QMLVTFADSHSALSVLD-VDGMKVKGRAV 87 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT----EEEEECSCSHHHHHHHH-GGGSEETTEEE
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC----cEEEEEcChHHHHHHHh-cCCeeeCCeEE
Confidence 35678888887642 322 668999999999999999988 49999999999999999 99999999443
No 381
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.57 E-value=5.2e-07 Score=60.34 Aligned_cols=76 Identities=20% Similarity=0.207 Sum_probs=64.6
Q ss_pred CCCCeEEEcCCCCCC-CH----HHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEE
Q 024135 4 RASRTLYVGNLPGDI-RE----REVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~-t~----~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~ 78 (272)
.-.++|+|+||+..+ +. +.++++|..|+++..+...+ +-.-..|.|.++++|.+|-..|++..|.|..|+|.
T Consensus 3 ~~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lk---SFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~Y 79 (104)
T 1wey_A 3 SGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFK---SFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLY 79 (104)
T ss_dssp SCCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEET---TTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEE
T ss_pred CCCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecC---cceEEEEEeCChHHHHHHHHHhccceecCceeEEE
Confidence 356889999998864 32 56799999999998888763 33468999999999999999999999999999999
Q ss_pred EccC
Q 024135 79 LAHG 82 (272)
Q Consensus 79 ~~~~ 82 (272)
++..
T Consensus 80 Fgq~ 83 (104)
T 1wey_A 80 FAQT 83 (104)
T ss_dssp CCCC
T ss_pred ecCC
Confidence 9973
No 382
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.57 E-value=1.3e-06 Score=58.12 Aligned_cols=89 Identities=24% Similarity=0.339 Sum_probs=71.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhc-----cCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEE
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYK-----YGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~-----~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~ 78 (272)
...++|.|.|||+.+.++.|.-+|++ =|+|..|.... +-|+|+|.+.+.|+..+. ...+.|.+..|.|.
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-----~~AvItF~d~~va~rVL~-k~~H~L~~~~LsV~ 79 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-----CGGVLTFREPADAERVLA-QADHELHGAQLSLR 79 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-----TEEEEEESSHHHHHHHHT-CSCCBSSSSBCEEE
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-----CcEEEEEcChHHHHHHhc-CCcceecCeEEEEE
Confidence 45689999999999999999999997 26899888762 689999999999999998 55778888999997
Q ss_pred EccCCCCCCCCCCCCCCCCCCCCCCCCCccceEEEcCCCCCCC
Q 024135 79 LAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSAS 121 (272)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~ 121 (272)
.... .....+++.+|++.++
T Consensus 80 P~~~-----------------------~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 80 PAPP-----------------------RAPARLLLQGLPPGTS 99 (104)
T ss_dssp ECCC-----------------------CCCCCCCCCSCCCCCC
T ss_pred cCCC-----------------------CCcceEeeecCCCCCC
Confidence 6432 2235778888887764
No 383
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.39 E-value=8.3e-07 Score=69.58 Aligned_cols=61 Identities=15% Similarity=0.153 Sum_probs=52.1
Q ss_pred CCHHHHHHHHHhcCCeeEEEEEecCC--------CCeEEEEeCCHHHHHHHHHHhcCcccccceeeeEE
Q 024135 120 ASWQDLKDHMRRAGDVCFSQVFRDGS--------GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (272)
Q Consensus 120 ~~~~~l~~~f~~~G~i~~~~~~~~~~--------~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~~ 180 (272)
-.+++|.+.|.+||.|..+.+..+.. .|++||+|.+.++|.+|+..|||..++|+.+.+..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~ 209 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEV 209 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEE
Confidence 35789999999999999999985533 26999999999999999999999999997665443
No 384
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=98.36 E-value=3.8e-06 Score=55.28 Aligned_cols=76 Identities=17% Similarity=0.207 Sum_probs=60.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecC-----CCCCceEEEEecChHHHHHHHHhcCCcccCCc-----eEE
Q 024135 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP-----PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGH-----RLR 76 (272)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~-----~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~-----~i~ 76 (272)
+.|.|++||+.+|++++.+.++.+..+........ .....-|||.|.+.+++......++|..|.+. ...
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 57899999999999999999999988777666321 22346899999999999999999999888533 235
Q ss_pred EEEccC
Q 024135 77 VELAHG 82 (272)
Q Consensus 77 v~~~~~ 82 (272)
|++|..
T Consensus 82 VE~AP~ 87 (91)
T 1uw4_A 82 VEFAPF 87 (91)
T ss_dssp EEECSS
T ss_pred EEEcCC
Confidence 666643
No 385
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.26 E-value=1.1e-05 Score=54.04 Aligned_cols=68 Identities=13% Similarity=0.100 Sum_probs=61.0
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHHhc-----CCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCccccccee
Q 024135 107 SEYRVLVTGLPSSASWQDLKDHMRRA-----GDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (272)
Q Consensus 107 ~~~~~~v~nl~~~~~~~~l~~~f~~~-----G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~ 176 (272)
...+|-+-|||..+++..|..+..++ |.+..+.+..+-. -|+|+|.+...|-+|.-.|+|.+|.|+..
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~--GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN--GAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT--EEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC--ceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 35689999999999999999999999 9999998887754 59999999999999999999999999443
No 386
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.99 E-value=3.6e-05 Score=52.96 Aligned_cols=70 Identities=17% Similarity=0.238 Sum_probs=57.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCC-ceEEEEEc
Q 024135 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG-HRLRVELA 80 (272)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g-~~i~v~~~ 80 (272)
.+-|.|-++|+.. ...|..+|++||+|...... ....+..|.|.+..+|++||. .||..|.| --|-|.+.
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~---~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS---NTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC---SSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEEC
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC---CCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEEC
Confidence 5678899999885 67888999999999988862 345799999999999999999 89999985 44555553
No 387
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.98 E-value=2.5e-05 Score=51.31 Aligned_cols=55 Identities=22% Similarity=0.367 Sum_probs=44.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcC
Q 024135 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRD 66 (272)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~ 66 (272)
.+.++| ++|+.+...||.++|+.||.|. |....+ ..|||.|.+++.|..|+..++
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~WidD----TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDD----TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEET----TEEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEcC----CeEEEEecCHHHHHHHHHhcc
Confidence 467778 9999999999999999999544 333322 389999999999999999663
No 388
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.91 E-value=3.5e-05 Score=50.96 Aligned_cols=77 Identities=19% Similarity=0.245 Sum_probs=56.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---C--CCCCceEEEEecChHHHHHHHHhcCCcccCCc-----e
Q 024135 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---P--PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGH-----R 74 (272)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~--~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~-----~ 74 (272)
-+-.|.|+.||+.+|++++.+.++.+-++....... + .....-|||.|.+.+++......++|..|.+. +
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 356799999999999999888887765543333221 1 12235799999999999999999999888543 3
Q ss_pred EEEEEcc
Q 024135 75 LRVELAH 81 (272)
Q Consensus 75 i~v~~~~ 81 (272)
..|++|.
T Consensus 88 a~VE~AP 94 (97)
T 2l08_A 88 AVVEFAP 94 (97)
T ss_dssp EEEEECC
T ss_pred eEEEecC
Confidence 4566664
No 389
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.81 E-value=3.9e-05 Score=50.54 Aligned_cols=54 Identities=22% Similarity=0.367 Sum_probs=44.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcC
Q 024135 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRD 66 (272)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~ 66 (272)
+.++| ++|+.+...||.++|+.||.|. |....+ ..|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv~-I~WidD----TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDD----TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEEE-EEEEET----TEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCEE-EEEEcC----CeEEEEecCHHHHHHHHHhcc
Confidence 56777 9999999999999999999332 333322 389999999999999999764
No 390
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.64 E-value=0.00047 Score=45.28 Aligned_cols=55 Identities=15% Similarity=0.193 Sum_probs=44.9
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhc
Q 024135 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLD 167 (272)
Q Consensus 108 ~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~ 167 (272)
...++| ++|..+...||.++|+.||.|..-.+-.. .|||.|.+++.|..|+..+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv~I~WidDT----sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQISWIDDT----SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEEETT----EEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCEEEEEEcCC----eEEEEecCHHHHHHHHHhcc
Confidence 345555 99999999999999999996654444333 79999999999999999764
No 391
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.47 E-value=0.00099 Score=43.70 Aligned_cols=68 Identities=15% Similarity=0.358 Sum_probs=57.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC------CeEEEEeCCHHHHHHHHHHhcCccccccee
Q 024135 109 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG------TTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (272)
Q Consensus 109 ~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~------~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~ 176 (272)
++|.|.+||+.+|++++.+.+.....+.......+... .-|+|.|.+.+++..-.+.++|..+-+...
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg 75 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKG 75 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCC
Confidence 47899999999999999999999988777666655422 269999999999999999999998876543
No 392
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.41 E-value=0.00042 Score=46.31 Aligned_cols=69 Identities=14% Similarity=0.120 Sum_probs=57.3
Q ss_pred ceEEEcCCCCCC-C----HHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCcccccceeeeE
Q 024135 109 YRVLVTGLPSSA-S----WQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (272)
Q Consensus 109 ~~~~v~nl~~~~-~----~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~~~ 179 (272)
++|+|+||+..+ . .+.++++|..|+++......+.-. -..|.|.+.++|.+|...|++..+.|...+.+
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR--Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~Y 79 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK--RVRINFSNPLSAADARLRLHKTEFLGKEMKLY 79 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT--EEEEECSSTTHHHHHHHTSTTSEETTEECEEE
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce--EEEEEeCChHHHHHHHHHhccceecCceeEEE
Confidence 589999998865 2 367899999999998877776644 46899999999999999999999999654443
No 393
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.26 E-value=0.0018 Score=44.52 Aligned_cols=65 Identities=15% Similarity=0.208 Sum_probs=53.7
Q ss_pred CCccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCccccc
Q 024135 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRN 173 (272)
Q Consensus 105 ~~~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g 173 (272)
.....-|.|.+.|+.. ...|..+|++||.|..... .....+-.|.|.+..+|++||. .||..++|
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~--~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g 85 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM--SNTGNWMHIRYQSKLQARKALS-KDGRIFGE 85 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE--CSSSSEEEEEESSHHHHHHHHT-TTTCEETT
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc--CCCCCeEEEEeCCHHHHHHHHH-hCCeEecC
Confidence 3456788999999885 6778899999999998876 2234489999999999999999 68888875
No 394
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.21 E-value=0.00032 Score=46.24 Aligned_cols=54 Identities=17% Similarity=0.198 Sum_probs=43.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhc
Q 024135 109 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLD 167 (272)
Q Consensus 109 ~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~ 167 (272)
..++| ++|..+...||.++|+.||.|. |..+.|- .|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv~-I~WidDT---sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDDT---SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEEE-EEEEETT---EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCEE-EEEEcCC---eEEEEecCHHHHHHHHHhcc
Confidence 34555 9999999999999999999444 4444442 79999999999999999764
No 395
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.21 E-value=0.00075 Score=47.07 Aligned_cols=74 Identities=20% Similarity=0.277 Sum_probs=54.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEE-eec---------------CC-CCCceEEEEecChHHHHHHHHhcCC
Q 024135 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHID-LKI---------------PP-RPPGYAFVEFEEARDAEDAIRGRDG 67 (272)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~-~~~---------------~~-~~~g~afV~f~~~~~a~~a~~~l~g 67 (272)
...-|.|-+.|+..+ ..|.+.|++||.|.+-. +.. +. ...++..|.|.+..+|.+||. .||
T Consensus 6 ~e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG 83 (132)
T 3p3d_A 6 GELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENG 83 (132)
T ss_dssp --CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTT
T ss_pred CceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCC
Confidence 456678888876654 67788999999987622 110 10 124688999999999999999 999
Q ss_pred cccCCceEEEEEc
Q 024135 68 YDFDGHRLRVELA 80 (272)
Q Consensus 68 ~~~~g~~i~v~~~ 80 (272)
..|.|.-|-|.+.
T Consensus 84 ~ii~G~mIGV~Py 96 (132)
T 3p3d_A 84 AVFNGVLLGVIPY 96 (132)
T ss_dssp CEETTEECEEEEC
T ss_pred eEeCcEEEEEEEC
Confidence 9999987677654
No 396
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.14 E-value=0.0032 Score=41.85 Aligned_cols=61 Identities=21% Similarity=0.284 Sum_probs=48.5
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHh---c--CCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcCccccc
Q 024135 108 EYRVLVTGLPSSASWQDLKDHMRR---A--GDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRN 173 (272)
Q Consensus 108 ~~~~~v~nl~~~~~~~~l~~~f~~---~--G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~~~g 173 (272)
..+|.|.|||+.+.++.|.-+|+. - |+|..+.... .-|+|+|.+.+.|+..+++ ....+.+
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~----~~AvItF~d~~va~rVL~k-~~H~L~~ 73 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG----CGGVLTFREPADAERVLAQ-ADHELHG 73 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET----TEEEEEESSHHHHHHHHTC-SCCBSSS
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC----CcEEEEEcChHHHHHHhcC-CcceecC
Confidence 469999999999999999999987 2 3677776655 4799999999999999985 2334444
No 397
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.90 E-value=0.00063 Score=58.44 Aligned_cols=56 Identities=25% Similarity=0.313 Sum_probs=43.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHH
Q 024135 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIR 63 (272)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~ 63 (272)
+.++|+|. .|..+++.+|.+.|++||+|.++.+..+. ..||.|||.+.+++..++.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--SEEEEEECC---CCHHHHS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--CeEEEEEeCCHHHHHHHHh
Confidence 45789996 79999999999999999999999986532 3699999999999998776
No 398
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.47 E-value=0.0058 Score=40.32 Aligned_cols=70 Identities=16% Similarity=0.242 Sum_probs=52.2
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC------CCeEEEEeCCHHHHHHHHHHhcCcccccceee
Q 024135 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS------GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (272)
Q Consensus 108 ~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~------~~~~fv~f~~~~~a~~a~~~l~~~~~~g~~~~ 177 (272)
..+|.|..||+.+|++++.+.+...-++.......... -..|+|.|.+.++...-.+.++|..+-+....
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~ 84 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGL 84 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCC
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCC
Confidence 46899999999999999988887665543322222211 12699999999999999999999988765443
No 399
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.20 E-value=0.02 Score=39.96 Aligned_cols=67 Identities=18% Similarity=0.264 Sum_probs=48.2
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEE-EEe--------------cC---CCCeEEEEeCCHHHHHHHHHHhcC
Q 024135 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQ-VFR--------------DG---SGTTGIVDYTNYDDMKHAIKKLDD 168 (272)
Q Consensus 107 ~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~-~~~--------------~~---~~~~~fv~f~~~~~a~~a~~~l~~ 168 (272)
....|.|.+.|+..+ ..+.+.|++||.|..-. +.. -+ ...+-.|+|.+..+|.+|+. .||
T Consensus 6 ~e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG 83 (132)
T 3p3d_A 6 GELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENG 83 (132)
T ss_dssp --CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTT
T ss_pred CceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCC
Confidence 346788889976654 55668899999987621 110 01 13478999999999999999 899
Q ss_pred cccccce
Q 024135 169 SEFRNAF 175 (272)
Q Consensus 169 ~~~~g~~ 175 (272)
..++|..
T Consensus 84 ~ii~G~m 90 (132)
T 3p3d_A 84 AVFNGVL 90 (132)
T ss_dssp CEETTEE
T ss_pred eEeCcEE
Confidence 9998843
No 400
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=94.63 E-value=0.019 Score=49.32 Aligned_cols=56 Identities=13% Similarity=0.218 Sum_probs=41.8
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHHHHH
Q 024135 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIK 164 (272)
Q Consensus 107 ~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~ 164 (272)
....|+|. .|...++.+|.++|++||.|..+.+..+. +.||.|+|.+.+++..++.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-SEEEEEECC---CCHHHHS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-CeEEEEEeCCHHHHHHHHh
Confidence 34678887 68889999999999999999999888653 3599999999998886655
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=94.01 E-value=0.14 Score=44.88 Aligned_cols=55 Identities=22% Similarity=0.357 Sum_probs=44.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcC
Q 024135 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRD 66 (272)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~ 66 (272)
+++++|+ +|+.+...+|.++|+.||.|. |.... ...|||.|.+.+.|..++..++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v~-V~wid----dt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNIQ-ISWID----DTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCCE-EEECS----SSEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCEE-EEEEc----CCeEEEEECCHHHHHHHHHHHH
Confidence 3577776 999999999999999999653 43321 2479999999999999999875
No 402
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=92.48 E-value=0.58 Score=29.13 Aligned_cols=68 Identities=19% Similarity=0.262 Sum_probs=45.4
Q ss_pred eEEEcCC-CCCCCHHHHHHHhhccC-----CeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEEcc
Q 024135 8 TLYVGNL-PGDIREREVEDLFYKYG-----PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (272)
Q Consensus 8 ~l~v~nL-~~~~t~~~l~~~F~~~G-----~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~~~ 81 (272)
+|+|..= ...+...+|..++..-+ .|-.+.+. -.|.||+... +.|..++..|++..+.|+.+.|+.++
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~-----d~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIM-----DNASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEEC-----SSCEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEe-----CCcEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 5666432 23488888888888655 45556664 3589999987 67888999999999999999988763
No 403
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=89.98 E-value=1.1 Score=39.10 Aligned_cols=56 Identities=18% Similarity=0.223 Sum_probs=44.1
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHhcC
Q 024135 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDD 168 (272)
Q Consensus 108 ~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~ 168 (272)
...++|+ +|..+...+|.++|+.||.+. |..+.+ ..|||.|.+.+.|..++..++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v~-V~widd---t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNIQ-ISWIDD---TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCCE-EEECSS---SEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCEE-EEEEcC---CeEEEEECCHHHHHHHHHHHHh
Confidence 3466665 899999999999999999653 333333 2799999999999999998853
No 404
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=73.97 E-value=6.2 Score=28.82 Aligned_cols=56 Identities=20% Similarity=0.211 Sum_probs=38.8
Q ss_pred eEEEcCCCC-C--------CCHHHHHHHh--hccCCeeEEEeecCCCCCceEEEEecChHHHH-HHHH
Q 024135 8 TLYVGNLPG-D--------IREREVEDLF--YKYGPIAHIDLKIPPRPPGYAFVEFEEARDAE-DAIR 63 (272)
Q Consensus 8 ~l~v~nL~~-~--------~t~~~l~~~F--~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~-~a~~ 63 (272)
++.|-|+|. . ....+|.+.| ..|.++.-..+.......|+|.|+|..--..- .|+.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHHHHHHHH
Confidence 456778887 2 4557899977 89998886666544556789999997644333 3444
No 405
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=72.12 E-value=16 Score=23.22 Aligned_cols=69 Identities=19% Similarity=0.235 Sum_probs=50.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCceEEEEE
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~i~v~~ 79 (272)
+.+|-|.|-|||..+-..++.-.....|---.+... -|.|.|.|.+.++...|+..|-+. ....|.++.
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyi-----dgqamirfqnsdeqrlaiqkllnh--nnnklqiei 78 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI-----DGQAMIRFQNSDEQRLAIQKLLNH--NNNKLQIEI 78 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC-----SSCEEEEESSHHHHHHHHHHHEET--TTTEEEEEE
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee-----cCeeEEEecCChHHHHHHHHHHhc--CCCEEEEEE
Confidence 567889999999998888887777777755555554 468999999999888888865322 233455543
No 406
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=65.87 E-value=23 Score=22.53 Aligned_cols=56 Identities=16% Similarity=0.322 Sum_probs=46.4
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCeEEEEeCCHHHHHHHHHHh
Q 024135 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKL 166 (272)
Q Consensus 107 ~~~~~~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l 166 (272)
.++-|.|-|+|..+-..++.-...-.|---+|..... -|.+.|.+.++..-|+.+|
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyidg----qamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYIDG----QAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECSS----CEEEEESSHHHHHHHHHHH
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeecC----eeEEEecCChHHHHHHHHH
Confidence 4567888999999988888887787787667776554 7999999999999999886
No 407
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=64.64 E-value=1.2 Score=31.93 Aligned_cols=28 Identities=14% Similarity=0.368 Sum_probs=19.6
Q ss_pred HHHHHHhhccCCeeEEEeecCCCCCceEEEEec
Q 024135 21 REVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFE 53 (272)
Q Consensus 21 ~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~ 53 (272)
+|+.++|...|.|+.+... +||+||...
T Consensus 2 ~~~~~l~~~~G~Vkwfn~~-----kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNVR-----MGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEETT-----TTEEEEEEE
T ss_pred CcccccccceeEEEEEECC-----CCeeEEeeC
Confidence 5677888888888877654 799999976
No 408
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=50.38 E-value=47 Score=21.22 Aligned_cols=33 Identities=30% Similarity=0.396 Sum_probs=24.8
Q ss_pred eeEEEeecCCCCCceEEEEecChHHHHHHHHhcCC
Q 024135 33 IAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDG 67 (272)
Q Consensus 33 v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g 67 (272)
|..+.++ ...+||.||++...+++..++..+.|
T Consensus 40 i~~v~vP--~~fPGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 40 VYSILAS--ESLKGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp EEEEEEC--TTSTTEEEEEESSHHHHHHHHTTCTT
T ss_pred EEEEEEe--cccCCEEEEEEecchhHHHHHHCCCC
Confidence 5555443 34689999999999988888886655
No 409
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.81 E-value=15 Score=21.98 Aligned_cols=20 Identities=30% Similarity=0.579 Sum_probs=13.5
Q ss_pred CCeeEEEeecCCCCCceEEEEecCh
Q 024135 31 GPIAHIDLKIPPRPPGYAFVEFEEA 55 (272)
Q Consensus 31 G~v~~v~~~~~~~~~g~afV~f~~~ 55 (272)
|.|+.|.. .+..|||.|.+.
T Consensus 28 GtV~kV~~-----~~~~ClV~FeD~ 47 (68)
T 2e5p_A 28 GTIKKVDS-----AREVCLVQFEDD 47 (68)
T ss_dssp EEEEEEET-----TTTEEEEEETTT
T ss_pred eEEEEEec-----CCcEEEEEEccC
Confidence 55555542 367899999984
No 410
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=40.02 E-value=30 Score=22.98 Aligned_cols=36 Identities=22% Similarity=0.326 Sum_probs=27.5
Q ss_pred CeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcc
Q 024135 32 PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYD 69 (272)
Q Consensus 32 ~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~ 69 (272)
.|.++... +..+||-|||=..+.++..|+..+.+..
T Consensus 40 ~I~Si~~~--~~lkGyIyVEA~~~~~V~~ai~gi~~v~ 75 (106)
T 3h7h_B 40 QIKSVVAP--EHVKGYIYVEAYKQTHVKQAIEGVGNLR 75 (106)
T ss_dssp CCCEEEEC--TTCCSEEEEEESSHHHHHHHHTTCGGGG
T ss_pred ceEEEEec--CCCceEEEEEeCCHHHHHHHHhccccee
Confidence 35555443 4568999999999999999999776543
No 411
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=39.47 E-value=71 Score=20.21 Aligned_cols=55 Identities=11% Similarity=0.212 Sum_probs=37.9
Q ss_pred EEEcCCCCCCCHHHHHHHhhc-cC-CeeEEEeecCCCCCceEEEEecChHHHHHHHH
Q 024135 9 LYVGNLPGDIREREVEDLFYK-YG-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIR 63 (272)
Q Consensus 9 l~v~nL~~~~t~~~l~~~F~~-~G-~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~ 63 (272)
.|+-.+...++..+|++.++. || .|..|.....+...--|||.+....+|.....
T Consensus 25 ~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~KKA~V~L~~~~~a~dva~ 81 (86)
T 3j21_T 25 KLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGEKKAYVKLKPEYSASEVAA 81 (86)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEECTTSCHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCceEEEEEcCCCCcHHHHHH
Confidence 344467789999999988885 44 45555554333334469999998888876544
No 412
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=36.46 E-value=64 Score=18.82 Aligned_cols=55 Identities=9% Similarity=0.000 Sum_probs=41.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHh
Q 024135 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRG 64 (272)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~ 64 (272)
..++.|.++....-...|...+.. ..|..+.+... .+-+.|.|.+.+....++..
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~---~~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN---EAVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS---EEEEEEEGGGHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc---CCEEEEEECCHHHHHHHHHH
Confidence 357889999988888999999999 88888887532 35678888756666667764
No 413
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=35.81 E-value=82 Score=19.86 Aligned_cols=55 Identities=16% Similarity=0.180 Sum_probs=37.1
Q ss_pred EEEcCCCCCCCHHHHHHHhhc-cC-CeeEEEeecCCCCCceEEEEecChHHHHHHHH
Q 024135 9 LYVGNLPGDIREREVEDLFYK-YG-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIR 63 (272)
Q Consensus 9 l~v~nL~~~~t~~~l~~~F~~-~G-~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~ 63 (272)
.|+-.+.+.++..+|++.++. || .|..|.........--|||.+....+|.....
T Consensus 24 ~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~~~KKA~VtL~~g~~aid~~~ 80 (85)
T 1vq8_S 24 KLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDGEKKAVVRLSEDDDAQEVAS 80 (85)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSSEEEEEEECTTSCHHHHHT
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCCCceEEEEEECCCCcHHHHHH
Confidence 345567789999999988875 45 45555554333334469999988777665544
No 414
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=33.87 E-value=21 Score=21.92 Aligned_cols=12 Identities=25% Similarity=0.490 Sum_probs=9.6
Q ss_pred CceEEEEecChH
Q 024135 45 PGYAFVEFEEAR 56 (272)
Q Consensus 45 ~g~afV~f~~~~ 56 (272)
+..|+|.|.+..
T Consensus 54 ~e~ClV~F~D~S 65 (79)
T 2m0o_A 54 REVCLVQFEDDS 65 (79)
T ss_dssp TTEEEEEETTSC
T ss_pred CCEEEEEEcCCC
Confidence 678999998843
No 415
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=33.57 E-value=35 Score=30.75 Aligned_cols=54 Identities=19% Similarity=0.282 Sum_probs=39.9
Q ss_pred CCCCCCCHHHHHHHhh----ccCCeeEEEeecC--CCCCceEEEEecChHHHHHHHHhcC
Q 024135 13 NLPGDIREREVEDLFY----KYGPIAHIDLKIP--PRPPGYAFVEFEEARDAEDAIRGRD 66 (272)
Q Consensus 13 nL~~~~t~~~l~~~F~----~~G~v~~v~~~~~--~~~~g~afV~f~~~~~a~~a~~~l~ 66 (272)
..+.+.+--||..+|- .+|-|+.+.|..- +....++++.|.+.++|.+++..+-
T Consensus 350 ~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i~ 409 (658)
T 4bby_A 350 QGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREIA 409 (658)
T ss_dssp CCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHHH
T ss_pred cccccCCCcCHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHHH
Confidence 4555666668888883 6789999988442 3334678999999999999887653
No 416
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=32.67 E-value=95 Score=19.63 Aligned_cols=56 Identities=16% Similarity=0.089 Sum_probs=39.3
Q ss_pred EEEcCCCCCCCHHHHHHHHHh-cC-CeeEEEEEecCCCC-eEEEEeCCHHHHHHHHHHh
Q 024135 111 VLVTGLPSSASWQDLKDHMRR-AG-DVCFSQVFRDGSGT-TGIVDYTNYDDMKHAIKKL 166 (272)
Q Consensus 111 ~~v~nl~~~~~~~~l~~~f~~-~G-~i~~~~~~~~~~~~-~~fv~f~~~~~a~~a~~~l 166 (272)
-|+..+....+..++++.+.. |+ .|..+....-+.+. -|+|.+..-.+|.+...++
T Consensus 25 ~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~KKA~V~L~~~~~a~dva~ki 83 (86)
T 3j21_T 25 KLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGEKKAYVKLKPEYSASEVAARL 83 (86)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEECTTSCHHHHHHHS
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCceEEEEEcCCCCcHHHHHHhh
Confidence 344455677899999999876 56 66677666654433 6999998877777765543
No 417
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=32.28 E-value=39 Score=26.60 Aligned_cols=30 Identities=33% Similarity=0.406 Sum_probs=24.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEE
Q 024135 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHID 37 (272)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~ 37 (272)
..+.|+|||++++..-|..++.. +.+..+.
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~ 140 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLV 140 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEE
Confidence 46789999999999999999987 5554433
No 418
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=30.73 E-value=27 Score=20.88 Aligned_cols=12 Identities=25% Similarity=0.459 Sum_probs=9.8
Q ss_pred CCceEEEEecCh
Q 024135 44 PPGYAFVEFEEA 55 (272)
Q Consensus 44 ~~g~afV~f~~~ 55 (272)
..+.|+|.|.+.
T Consensus 40 ~~gtC~V~F~D~ 51 (66)
T 2eqj_A 40 LKQSCFIIFEDS 51 (66)
T ss_dssp TTTEEEEEETTT
T ss_pred CCcEEEEEEccC
Confidence 368999999873
No 419
>2cs4_A Protein C12ORF2; GTP binding, ubiquitin fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=30.21 E-value=34 Score=22.17 Aligned_cols=22 Identities=18% Similarity=0.036 Sum_probs=16.0
Q ss_pred EcCCCCCCCHHHHHHHhh-ccCC
Q 024135 11 VGNLPGDIREREVEDLFY-KYGP 32 (272)
Q Consensus 11 v~nL~~~~t~~~l~~~F~-~~G~ 32 (272)
|.+|.+.+|..||...+. ..|.
T Consensus 21 VsGvT~~TTC~DVV~aL~~~~G~ 43 (95)
T 2cs4_A 21 VCGVTEVTTCQEVVIALAQAIGR 43 (95)
T ss_dssp CSSBCSSSCHHHHHHHHHHHHSC
T ss_pred EECCCCCCcHHHHHHHHHhccCC
Confidence 457888999999888554 4453
No 420
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=29.56 E-value=1.5e+02 Score=20.95 Aligned_cols=54 Identities=11% Similarity=0.143 Sum_probs=35.8
Q ss_pred EEcCCCCCCCHHHHHHHhhc-cC-CeeEEEeecCCCCCceEEEEecChHHHHHHHH
Q 024135 10 YVGNLPGDIREREVEDLFYK-YG-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIR 63 (272)
Q Consensus 10 ~v~nL~~~~t~~~l~~~F~~-~G-~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~ 63 (272)
|+--+...++..+|.+.++. || .|..|.........--|||.+....+|.....
T Consensus 90 ~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~g~KKAyV~La~~~dAldvAn 145 (150)
T 4a17_R 90 MVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTITGNKKAYIRLAADSDSLTLAN 145 (150)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSCEEEEEEECSSSCHHHHHH
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCcEEEEEEcCCCCcHHHHHH
Confidence 34456778999999888875 44 45555554333334469999988777776544
No 421
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=29.47 E-value=1.4e+02 Score=21.29 Aligned_cols=54 Identities=20% Similarity=0.258 Sum_probs=36.3
Q ss_pred EEcCCCCCCCHHHHHHHhhc-cC-CeeEEEeecCCCCCceEEEEecChHHHHHHHH
Q 024135 10 YVGNLPGDIREREVEDLFYK-YG-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIR 63 (272)
Q Consensus 10 ~v~nL~~~~t~~~l~~~F~~-~G-~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~ 63 (272)
|+-.+...++..+|.+.++. || .|..|.........--|||.+....+|.....
T Consensus 96 yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~~~KKAiVtL~~g~~aid~~~ 151 (156)
T 2zkr_s 96 LVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVAN 151 (156)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECSSSCEEEEEEECTTSCHHHHHH
T ss_pred EEEEEECCCCHHHHHHHHHHHhCCcceEEEeeEcCCCceEEEEEECCCCcHHHHHH
Confidence 44456778999999988875 45 45666553322234469999988777666554
No 422
>1nz8_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.58.42.1
Probab=28.87 E-value=1.3e+02 Score=20.01 Aligned_cols=24 Identities=33% Similarity=0.753 Sum_probs=19.5
Q ss_pred CCceEEEEecChH-----HHHHHHHhcCC
Q 024135 44 PPGYAFVEFEEAR-----DAEDAIRGRDG 67 (272)
Q Consensus 44 ~~g~afV~f~~~~-----~a~~a~~~l~g 67 (272)
-.||.||++...+ ++...+....|
T Consensus 61 fPGYVFV~~~~~~~~~~~~~~~~vr~t~g 89 (119)
T 1nz8_A 61 FPGYLFIQMDLGDEEEPNEAWEVVRGTPG 89 (119)
T ss_dssp STTEEEEEECCCSSSSCCHHHHHHHHSTT
T ss_pred CCCEEEEEeeccccccchhHHHHHHcCCC
Confidence 5799999998877 77778887766
No 423
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=28.50 E-value=1.5e+02 Score=20.80 Aligned_cols=54 Identities=15% Similarity=0.226 Sum_probs=35.7
Q ss_pred EEcCCCCCCCHHHHHHHhhc-cC-CeeEEEeecCCCCCceEEEEecChHHHHHHHH
Q 024135 10 YVGNLPGDIREREVEDLFYK-YG-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIR 63 (272)
Q Consensus 10 ~v~nL~~~~t~~~l~~~F~~-~G-~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~ 63 (272)
|+--+...++..+|.+.++. || .|..|.........--|||.+....+|.....
T Consensus 82 ~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvAn 137 (142)
T 3u5e_X 82 LVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGTKKAYVRLTADYDALDIAN 137 (142)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTTSCEEEEEEECTTCCHHHHHH
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCceEEEEEeCCCCcHHHHHH
Confidence 44456778999999888875 44 45555554333334469999988777776543
No 424
>2ns6_A Mobilization protein A; nickase, 5-strand antiparallel beta sheet, metalloenzyme, hydrolase; 2.10A {Pseudomonas aeruginosa}
Probab=28.38 E-value=95 Score=22.82 Aligned_cols=46 Identities=9% Similarity=-0.053 Sum_probs=31.1
Q ss_pred EEcCCCCCCCHHH--------HHHHhhccCCeeEEEeecCCCCCceEEEEecCh
Q 024135 10 YVGNLPGDIRERE--------VEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEA 55 (272)
Q Consensus 10 ~v~nL~~~~t~~~--------l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~ 55 (272)
|+=-||..++.++ +.++|..+|-|.++-|..++.....|-|.|.+-
T Consensus 74 ~~iALP~EL~~eq~~~L~~~f~~~~~~~~G~~~d~AIH~~~~~NpHaHim~t~R 127 (185)
T 2ns6_A 74 VEFALPVELTLDQQKALASEFAQHLTGAERLPYTLAIHAGGGENPHCHLMISER 127 (185)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHHHTTTTCCEEEEEEEETTTEEEEEEEECCB
T ss_pred EEEECCccCCHHHHHHHHHHHHHHHHHhcCCEEEEEEEcCCCCCceEEEEEeec
Confidence 3447999999877 445666678888888875433344677776653
No 425
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=28.27 E-value=23 Score=28.05 Aligned_cols=32 Identities=19% Similarity=0.163 Sum_probs=24.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEe
Q 024135 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDL 38 (272)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~ 38 (272)
..+.|+|||+.++..-|..++.....+..+.+
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~ 146 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHF 146 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEE
Confidence 46789999999999999999986544544433
No 426
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=28.10 E-value=73 Score=26.95 Aligned_cols=59 Identities=29% Similarity=0.381 Sum_probs=40.5
Q ss_pred EEEcCCCCCCC----HHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCCce
Q 024135 9 LYVGNLPGDIR----EREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHR 74 (272)
Q Consensus 9 l~v~nL~~~~t----~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~ 74 (272)
-+||||..-.. ...+.++..+||+|..+.+- +.-+|...+++.+..++. -++..+.+++
T Consensus 17 PliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g------~~~~vvv~~p~~~k~il~-~~~~~f~~rp 79 (494)
T 3swz_A 17 PLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMG------TKTTVIVGHHQLAKEVLI-KKGKDFSGRP 79 (494)
T ss_dssp CEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEET------TEEEEEECSHHHHHHHHT-TTTTTTBBCC
T ss_pred CeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeC------CCCEEEECCHHHHHHHHH-hCcHhhCCCC
Confidence 46888864321 24577788899999888763 345777889999988886 3555555443
No 427
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.44 E-value=12 Score=21.95 Aligned_cols=13 Identities=23% Similarity=0.399 Sum_probs=10.0
Q ss_pred CCceEEEEecChH
Q 024135 44 PPGYAFVEFEEAR 56 (272)
Q Consensus 44 ~~g~afV~f~~~~ 56 (272)
.+..|||.|.+..
T Consensus 34 ~~~~ClV~FeD~s 46 (63)
T 2e5q_A 34 SKQSCLVTFEDNS 46 (63)
T ss_dssp TTSEEEEEETTSC
T ss_pred CCCEEEEEEccCc
Confidence 3678999998743
No 428
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=27.39 E-value=1.2e+02 Score=21.49 Aligned_cols=54 Identities=19% Similarity=0.215 Sum_probs=35.8
Q ss_pred EEcCCCCCCCHHHHHHHhhc-cC-CeeEEEeecCCCCCceEEEEecChHHHHHHHH
Q 024135 10 YVGNLPGDIREREVEDLFYK-YG-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIR 63 (272)
Q Consensus 10 ~v~nL~~~~t~~~l~~~F~~-~G-~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~ 63 (272)
|+-.+...++..+|.+.++. || .|..|.........--|||.+....+|.....
T Consensus 92 ~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvAn 147 (152)
T 3iz5_X 92 LVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDVAN 147 (152)
T ss_dssp EEEEECSSCCSHHHHHHHHHHHTCCEEEEEEEECTTSSEEEEEEECTTSCHHHHHG
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCcceEEEeeEcCCCceEEEEEcCCCCcHHHHHH
Confidence 34456678888898887774 44 45555554333334469999998877776544
No 429
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=26.96 E-value=61 Score=24.27 Aligned_cols=35 Identities=17% Similarity=0.111 Sum_probs=27.4
Q ss_pred eeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcc
Q 024135 33 IAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYD 69 (272)
Q Consensus 33 v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~ 69 (272)
|.++... +..+||.|||=..+.++..|+..+.+..
T Consensus 139 I~Si~~~--d~lkGYIyVEA~~~~~V~~ai~Gi~~vy 173 (200)
T 2exu_A 139 ILSIFQR--DNYTGRIYIEAPKQSVIEKFCNGVPDIY 173 (200)
T ss_dssp CCEEECC--TTSTTEEEEECSCHHHHHHHHTTCTTEE
T ss_pred EEEEEec--CCCcEEEEEEECCHHHHHHHHhhhhhhh
Confidence 5554432 3468999999999999999999888753
No 430
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=26.52 E-value=1.6e+02 Score=20.57 Aligned_cols=57 Identities=19% Similarity=0.193 Sum_probs=39.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHHh-cC-CeeEEEEEecCCCC-eEEEEeCCHHHHHHHHHHh
Q 024135 110 RVLVTGLPSSASWQDLKDHMRR-AG-DVCFSQVFRDGSGT-TGIVDYTNYDDMKHAIKKL 166 (272)
Q Consensus 110 ~~~v~nl~~~~~~~~l~~~f~~-~G-~i~~~~~~~~~~~~-~~fv~f~~~~~a~~a~~~l 166 (272)
.-|+..+....+..+|++.++. |+ .|..|..+.-+.+. -|+|.+..-.+|.+...++
T Consensus 80 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvAnki 139 (142)
T 3u5e_X 80 NILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGTKKAYVRLTADYDALDIANRI 139 (142)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTTSCEEEEEEECTTCCHHHHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCceEEEEEeCCCCcHHHHHHhh
Confidence 4566667788899999988865 56 66667666555433 5999998777766655543
No 431
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=25.88 E-value=28 Score=21.30 Aligned_cols=11 Identities=27% Similarity=0.673 Sum_probs=8.5
Q ss_pred CCceEEEEecC
Q 024135 44 PPGYAFVEFEE 54 (272)
Q Consensus 44 ~~g~afV~f~~ 54 (272)
.+||+||+-.+
T Consensus 13 ~KGfGFI~~~d 23 (74)
T 2k5n_A 13 DKGFGFIKDEN 23 (74)
T ss_dssp TTTEEEEEESS
T ss_pred CCCeEEEecCC
Confidence 37899998765
No 432
>2rf4_B DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=25.72 E-value=59 Score=20.52 Aligned_cols=27 Identities=15% Similarity=0.306 Sum_probs=23.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcc
Q 024135 4 RASRTLYVGNLPGDIREREVEDLFYKY 30 (272)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~ 30 (272)
....+|.|.+.+..++.++..+++..|
T Consensus 17 NtPvvi~v~~~~q~v~~~eae~~L~~F 43 (87)
T 2rf4_B 17 NTPVVIHATQLPQHVSTDEVLQFLESF 43 (87)
T ss_dssp CCCCEEEESSCCEECCHHHHHHHHHHH
T ss_pred CCCeEEEeecCCccCCHHHHHHHHHHH
Confidence 456788999999999999999999877
No 433
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=25.69 E-value=25 Score=21.58 Aligned_cols=39 Identities=8% Similarity=0.025 Sum_probs=21.4
Q ss_pred CCceEEEEecChHHHHHHHHhcC-C----cccCCceEEEEEccC
Q 024135 44 PPGYAFVEFEEARDAEDAIRGRD-G----YDFDGHRLRVELAHG 82 (272)
Q Consensus 44 ~~g~afV~f~~~~~a~~a~~~l~-g----~~~~g~~i~v~~~~~ 82 (272)
.+||+||+-.+-++.--=+..+. + ..-.|..+..+....
T Consensus 11 ~KGfGFI~~~dG~DvFvH~s~i~~~~g~~~l~~G~~V~F~~~~g 54 (74)
T 2kcm_A 11 AKKYGFIQGDDGESYFLHFSELLDKKDEGKLVKGSMVHFDPTPT 54 (74)
T ss_dssp TTTEEEEEETTSCEECCCGGGSSCSGGGTTCCTTSEEEEEEECT
T ss_pred CCCEEEEecCCCceEEEEhhhcccCCCCCCCCCCCEEEEEEEEC
Confidence 48999998766433322222233 2 223477777766543
No 434
>2od0_A Hypothetical protein VP1028; structural genomics, unknown functi 2, protein structure initiative, midwest center for structu genomics; 1.95A {Vibrio parahaemolyticus} SCOP: d.198.5.2
Probab=25.36 E-value=65 Score=21.00 Aligned_cols=22 Identities=18% Similarity=0.164 Sum_probs=18.5
Q ss_pred CCHHHHHHHhhccCCeeEEEee
Q 024135 18 IREREVEDLFYKYGPIAHIDLK 39 (272)
Q Consensus 18 ~t~~~l~~~F~~~G~v~~v~~~ 39 (272)
.+++.|.++|+.+|+|..-.+.
T Consensus 4 ~~~~~i~e~l~~lg~i~~r~MF 25 (105)
T 2od0_A 4 PILKDSMKLFEALGTIKSRSMF 25 (105)
T ss_dssp THHHHHHHHHGGGSCCEEEEET
T ss_pred hHHHHHHHHHhccCCceEeecc
Confidence 4567799999999999988875
No 435
>2w7a_A LINE-1 ORF1P; RNA-binding protein; HET: MSE; 1.40A {Homo sapiens}
Probab=25.20 E-value=1.3e+02 Score=19.58 Aligned_cols=73 Identities=18% Similarity=0.234 Sum_probs=41.2
Q ss_pred CCeEEEcCCCCCCCHHH--HHHHhhc--------cC-----CeeEEEeec---CC--CCCceEEEEecChHH---HHHHH
Q 024135 6 SRTLYVGNLPGDIRERE--VEDLFYK--------YG-----PIAHIDLKI---PP--RPPGYAFVEFEEARD---AEDAI 62 (272)
Q Consensus 6 ~~~l~v~nL~~~~t~~~--l~~~F~~--------~G-----~v~~v~~~~---~~--~~~g~afV~f~~~~~---a~~a~ 62 (272)
.+.|.|-+||....+.. +..+|.. .+ .|..+.-.. +. .......|.|....+ ...|.
T Consensus 3 r~NirIiGvPE~e~~k~~~~e~lf~eIi~enfPnL~ke~~i~v~ea~Rsp~~~~~kr~tPRhIIvK~~~~~~KErILkaa 82 (100)
T 2w7a_A 3 MGNLRLIGVPESDVENGTKLENTLQDIIQENFPNLARQANVQIQEIQRTPQRYSSRRATPRHIIVRFTKVEMKEKMLRAA 82 (100)
T ss_dssp TTEEEEECCCCCTTCCHHHHHHHHHHHHHHHCHHHHHHTCCCEEEEEEESSSCCSSCCSCCEEEEEESCHHHHHHHHHHH
T ss_pred ccceeEEeCCCCccccchhHHHHHHHHHHHHCcCcccchhhhhhhhhcCCCccCCCCCCCCeEEEEecccccHHHHHHHH
Confidence 46799999999743322 4444432 22 133332211 11 123467777766554 44555
Q ss_pred HhcCCcccCCceEEEE
Q 024135 63 RGRDGYDFDGHRLRVE 78 (272)
Q Consensus 63 ~~l~g~~~~g~~i~v~ 78 (272)
...+...+.|.+|.+.
T Consensus 83 r~k~~vtykg~pirls 98 (100)
T 2w7a_A 83 REKGRVTLKGKPIRLT 98 (100)
T ss_dssp HHHCCEEETTEEEEEE
T ss_pred HHhCceeeCCcceeec
Confidence 5566788899998875
No 436
>1eij_A Hypothetical protein MTH1615; beta-helix, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: a.5.6.1
Probab=24.88 E-value=50 Score=20.61 Aligned_cols=20 Identities=15% Similarity=0.484 Sum_probs=17.7
Q ss_pred cCCCCCCCHHHHHHHhhccC
Q 024135 12 GNLPGDIREREVEDLFYKYG 31 (272)
Q Consensus 12 ~nL~~~~t~~~l~~~F~~~G 31 (272)
|.|+..+|+++|.++++...
T Consensus 50 Gqi~~ki~e~~L~~lL~~i~ 69 (80)
T 1eij_A 50 GRVRSKITDEQLKELLKRVA 69 (80)
T ss_dssp CSSCCCCCHHHHHHHHHHHS
T ss_pred CCCCCCcCHHHHHHHHHHHc
Confidence 68899999999999999764
No 437
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=24.49 E-value=1.8e+02 Score=20.58 Aligned_cols=57 Identities=11% Similarity=0.128 Sum_probs=39.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHHh-cC-CeeEEEEEecCCCC-eEEEEeCCHHHHHHHHHHh
Q 024135 110 RVLVTGLPSSASWQDLKDHMRR-AG-DVCFSQVFRDGSGT-TGIVDYTNYDDMKHAIKKL 166 (272)
Q Consensus 110 ~~~v~nl~~~~~~~~l~~~f~~-~G-~i~~~~~~~~~~~~-~~fv~f~~~~~a~~a~~~l 166 (272)
.-|+..+....+..+|++.+.. |+ .|..|..+.-+.+. -|||.+..-.+|.+...++
T Consensus 88 N~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~g~KKAyV~La~~~dAldvAnki 147 (150)
T 4a17_R 88 NTMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTITGNKKAYIRLAADSDSLTLANKI 147 (150)
T ss_dssp SEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSCEEEEEEECSSSCHHHHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCcEEEEEEcCCCCcHHHHHHhh
Confidence 4556666778899999988865 56 56667666555433 5999998776766655543
No 438
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=22.66 E-value=55 Score=27.50 Aligned_cols=56 Identities=18% Similarity=0.183 Sum_probs=34.8
Q ss_pred EEcCCCCC---CCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCcccCC
Q 024135 10 YVGNLPGD---IREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG 72 (272)
Q Consensus 10 ~v~nL~~~---~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g 72 (272)
+|||+..- -....+.++..+||+|..+.+- +.-+|...+++.+.+++. -++..+.+
T Consensus 20 ~iGn~~~~~~~~~~~~~~~~~~kYG~i~~~~~g------~~~~vvv~~p~~i~~vl~-~~~~~f~~ 78 (479)
T 3tbg_A 20 GLGNLLHVDFQNTPYCFDQLRRRFGDVFSLQLA------WTPVVVLNGLAAVREALV-THGEDTAD 78 (479)
T ss_dssp TTBTGGGCCTTSHHHHHHHHHHHHCSEEEEEET------TEEEEEEEHHHHHHHHHT-TTGGGSCB
T ss_pred cccchHhhcCCCHHHHHHHHHHHhCCEEEEEEC------CeeEEEECCHHHHHHHHH-hCChhhcC
Confidence 46665432 2234477888899999887762 233566678888877765 34444443
No 439
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=22.38 E-value=37 Score=20.25 Aligned_cols=11 Identities=27% Similarity=0.739 Sum_probs=8.4
Q ss_pred CCceEEEEecC
Q 024135 44 PPGYAFVEFEE 54 (272)
Q Consensus 44 ~~g~afV~f~~ 54 (272)
.+||+||+=.+
T Consensus 12 ~kGfGFI~~~~ 22 (67)
T 3cam_A 12 AKGFGFITPDE 22 (67)
T ss_dssp TTTEEEEEETT
T ss_pred CCCeEEEecCC
Confidence 47999998654
No 440
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=22.06 E-value=38 Score=20.08 Aligned_cols=11 Identities=45% Similarity=0.921 Sum_probs=8.5
Q ss_pred CCceEEEEecC
Q 024135 44 PPGYAFVEFEE 54 (272)
Q Consensus 44 ~~g~afV~f~~ 54 (272)
.+||+||+-.+
T Consensus 12 ~kGfGFI~~~~ 22 (66)
T 1c9o_A 12 EKGYGFIEVEG 22 (66)
T ss_dssp TTTEEEEEETT
T ss_pred CCCeEEEecCC
Confidence 47999998664
No 441
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=21.86 E-value=1.2e+02 Score=17.09 Aligned_cols=54 Identities=13% Similarity=0.129 Sum_probs=38.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCceEEEEecC---hHHHHHHHH
Q 024135 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEE---ARDAEDAIR 63 (272)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~---~~~a~~a~~ 63 (272)
.++.|.|+....-...|...+.....|..+.+... .+-+.|.|.. .++..+++.
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~---~~~~~v~~~~~~~~~~i~~~i~ 60 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFA---LEQAVVSYHGETTPQILTDAVE 60 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETT---TTEEEEEECTTCCHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEec---CCEEEEEECCCCCHHHHHHHHH
Confidence 46788888888778889999999888888887543 4567888743 334445554
No 442
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=21.00 E-value=40 Score=20.46 Aligned_cols=11 Identities=45% Similarity=0.821 Sum_probs=8.4
Q ss_pred CCceEEEEecC
Q 024135 44 PPGYAFVEFEE 54 (272)
Q Consensus 44 ~~g~afV~f~~ 54 (272)
.+||+||.-.+
T Consensus 12 ~kGfGFI~~~~ 22 (73)
T 3a0j_A 12 EKGYGFIEREG 22 (73)
T ss_dssp TTTEEEEECTT
T ss_pred CCCEEEEecCC
Confidence 47999998654
No 443
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=20.90 E-value=55 Score=18.94 Aligned_cols=12 Identities=25% Similarity=0.490 Sum_probs=9.4
Q ss_pred CceEEEEecChH
Q 024135 45 PGYAFVEFEEAR 56 (272)
Q Consensus 45 ~g~afV~f~~~~ 56 (272)
...|+|.|.+..
T Consensus 31 ~~~clV~F~D~s 42 (58)
T 4hcz_A 31 REVCLVQFEDDS 42 (58)
T ss_dssp TTEEEEEETTSC
T ss_pred CCEEEEEEcCCC
Confidence 568999998843
No 444
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=20.87 E-value=68 Score=24.82 Aligned_cols=27 Identities=30% Similarity=0.278 Sum_probs=21.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCe
Q 024135 7 RTLYVGNLPGDIREREVEDLFYKYGPI 33 (272)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~v 33 (272)
..+.|+|||+.++...|..++.....+
T Consensus 91 ~~~vvsNlPY~i~~~il~~ll~~~~~~ 117 (252)
T 1qyr_A 91 PLRVFGNLPYNISTPLMFHLFSYTDAI 117 (252)
T ss_dssp CEEEEEECCTTTHHHHHHHHHTTGGGE
T ss_pred ceEEEECCCCCccHHHHHHHHhcCCCc
Confidence 357899999999999888888754333
No 445
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=20.69 E-value=63 Score=26.60 Aligned_cols=22 Identities=23% Similarity=0.191 Sum_probs=19.4
Q ss_pred eEEEcCCCCCCCHHHHHHHhhc
Q 024135 8 TLYVGNLPGDIREREVEDLFYK 29 (272)
Q Consensus 8 ~l~v~nL~~~~t~~~l~~~F~~ 29 (272)
...|+|||++++..-|..++..
T Consensus 144 ~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 144 FLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEECCSTTHHHHHHHHHHH
T ss_pred eEEEEECCCchHHHHHHHHHHh
Confidence 4789999999999999888874
No 446
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=20.64 E-value=65 Score=28.01 Aligned_cols=41 Identities=22% Similarity=0.411 Sum_probs=28.2
Q ss_pred HHHHHh--hccCCeeEEEeecCCCC--CceEEEEecChHHHHHHH
Q 024135 22 EVEDLF--YKYGPIAHIDLKIPPRP--PGYAFVEFEEARDAEDAI 62 (272)
Q Consensus 22 ~l~~~F--~~~G~v~~v~~~~~~~~--~g~afV~f~~~~~a~~a~ 62 (272)
+|..+| +.+|-|..+.+...+.+ ...+++.|.+.++|.+|+
T Consensus 217 ~l~~l~~g~~lGiVt~~~l~l~p~p~~~~~~~~~f~~~~~~~~~~ 261 (520)
T 1wvf_A 217 TLDGMFTQANYGICTKMGFWLMPKPPVFKPFEVIFEDEADIVEIV 261 (520)
T ss_dssp CCHHHHTTSSSCEEEEEEEECEECCSEEEEEEEEECCGGGHHHHH
T ss_pred chhhhccCCceEEEEEEEEEEEecCCeEEEEEEEeCCHHHHHHHH
Confidence 456666 36899999988543333 345788999988876644
No 447
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=20.61 E-value=83 Score=22.10 Aligned_cols=34 Identities=35% Similarity=0.395 Sum_probs=26.0
Q ss_pred eeEEEeecCCCCCceEEEEecChHHHHHHHHhcCCc
Q 024135 33 IAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68 (272)
Q Consensus 33 v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~ 68 (272)
|..+.++ ...+||.||++...++...++..+.|.
T Consensus 33 i~~v~vp--~~fPGYVfVe~~~~~~~~~~v~~t~gV 66 (152)
T 3p8b_B 33 IYAILAP--SRVKGYIFVEAPNKGVVDEAIRGIRHA 66 (152)
T ss_dssp CCEEEEC--TTCCSEEEEEESSHHHHHHHHTTCTTE
T ss_pred EEEEEee--cCCCcEEEEEEEchHHHHHHHhCCCCE
Confidence 5555553 236899999999999888899887763
No 448
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=20.28 E-value=60 Score=25.03 Aligned_cols=27 Identities=26% Similarity=0.391 Sum_probs=21.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCe
Q 024135 7 RTLYVGNLPGDIREREVEDLFYKYGPI 33 (272)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~v 33 (272)
..+.|+|||++++..-|..++.....+
T Consensus 96 ~~~vv~NlPy~i~~~il~~ll~~~~~~ 122 (249)
T 3ftd_A 96 ELKVVGNLPYNVASLIIENTVYNKDCV 122 (249)
T ss_dssp SEEEEEECCTTTHHHHHHHHHHTGGGC
T ss_pred CcEEEEECchhccHHHHHHHHhcCCCC
Confidence 357899999999999999998754333
No 449
>2fh0_A Hypothetical 16.0 kDa protein in ABF2-CHL12 intergenic region; ensemble, YMR074CP, unknown function; NMR {Saccharomyces cerevisiae}
Probab=20.16 E-value=58 Score=20.39 Aligned_cols=19 Identities=21% Similarity=0.333 Sum_probs=16.8
Q ss_pred cCCCCCCCHHHHHHHhhcc
Q 024135 12 GNLPGDIREREVEDLFYKY 30 (272)
Q Consensus 12 ~nL~~~~t~~~l~~~F~~~ 30 (272)
|.|+..+++++|.+++...
T Consensus 48 Gqi~~ki~e~~L~~lL~~i 66 (81)
T 2fh0_A 48 NNVTHKITEAEIVSILNGI 66 (81)
T ss_dssp TCCSCCBCHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHH
Confidence 6788999999999999875
No 450
>1cqm_A Ribosomal protein S6; alzheimer disease, oligomerization; 1.65A {Thermus thermophilus} SCOP: d.58.14.1 PDB: 1cqn_A 1qjh_A 1ris_A 1fka_F 1gix_I* 1hnw_F* 1hnx_F* 1hnz_F* 1hr0_F 1i94_F* 1i95_F* 1i96_F* 1i97_F* 1ibk_F* 1ibl_F* 1ibm_F 1j5e_F 1jgo_I* 1jgp_I* 1jgq_I* ...
Probab=20.12 E-value=1.4e+02 Score=19.34 Aligned_cols=50 Identities=12% Similarity=0.256 Sum_probs=29.0
Q ss_pred CCCCCCHHHHHHHhhcc--------CCeeEEEe--------ecCCCCCc-eEEEEecChHHHHHHHH
Q 024135 14 LPGDIREREVEDLFYKY--------GPIAHIDL--------KIPPRPPG-YAFVEFEEARDAEDAIR 63 (272)
Q Consensus 14 L~~~~t~~~l~~~F~~~--------G~v~~v~~--------~~~~~~~g-~afV~f~~~~~a~~a~~ 63 (272)
|.++++++++..+...| |.|..+.- .......| |.++.|.-...+.+-+.
T Consensus 10 l~p~l~~e~~~~~~~~~~~~i~~~gg~i~~~e~wG~R~LAY~I~k~~~G~Y~l~~f~a~~~~i~ele 76 (101)
T 1cqm_A 10 LNPNLDQSQLALEKEIIQRALENYGARVEKVAILGLRRLAYPIAKDPQGYFLWYQVEMPEDRVNDLA 76 (101)
T ss_dssp ECTTCCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEECHHHHHHHH
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCcccccCcCCCCEEEEEEEEEEeChHHHHHHH
Confidence 35677888876665554 45555443 12233344 67777877666655544
No 451
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=20.00 E-value=44 Score=19.78 Aligned_cols=11 Identities=36% Similarity=0.809 Sum_probs=8.7
Q ss_pred CCceEEEEecC
Q 024135 44 PPGYAFVEFEE 54 (272)
Q Consensus 44 ~~g~afV~f~~ 54 (272)
.+||+||.-.+
T Consensus 11 ~kGfGFI~~~~ 21 (66)
T 1g6p_A 11 KKGYGFITKDE 21 (66)
T ss_dssp TTTEEEEEETT
T ss_pred CCCEEEEecCC
Confidence 47999998764
Done!