Query 024136
Match_columns 272
No_of_seqs 205 out of 387
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 09:16:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024136.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024136hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3088 Secretory carrier memb 100.0 5.2E-90 1.1E-94 628.5 19.7 242 1-271 1-253 (313)
2 PF04144 SCAMP: SCAMP family; 100.0 1.7E-53 3.7E-58 370.4 11.0 150 118-271 1-156 (177)
3 KOG3088 Secretory carrier memb 99.4 2.3E-12 4.9E-17 119.1 10.2 86 76-161 63-155 (313)
4 PF05915 DUF872: Eukaryotic pr 80.7 11 0.00023 31.0 7.8 69 142-213 41-109 (115)
5 KOG3966 p53-mediated apoptosis 75.9 9.3 0.0002 36.4 6.7 66 139-206 89-173 (360)
6 PF14257 DUF4349: Domain of un 71.7 36 0.00078 31.0 9.6 10 143-152 217-226 (262)
7 PRK13741 conjugal transfer ent 71.6 46 0.00099 29.4 9.6 18 240-257 151-168 (171)
8 PF11712 Vma12: Endoplasmic re 68.6 68 0.0015 26.7 12.8 12 157-168 79-90 (142)
9 PRK11098 microcin B17 transpor 67.4 42 0.00092 33.3 9.6 68 135-207 46-124 (409)
10 KOG3859 Septins (P-loop GTPase 66.7 11 0.00023 36.4 5.0 30 81-110 334-371 (406)
11 KOG3312 Predicted membrane pro 63.5 45 0.00098 29.1 7.8 33 81-113 42-79 (186)
12 KOG2391 Vacuolar sorting prote 63.5 68 0.0015 31.4 9.8 9 88-96 236-244 (365)
13 PF07787 DUF1625: Protein of u 59.1 23 0.00051 32.2 5.7 26 146-171 187-212 (248)
14 KOG1150 Predicted molecular ch 58.3 12 0.00026 34.1 3.6 26 80-105 168-195 (250)
15 COG1422 Predicted membrane pro 57.3 69 0.0015 29.0 8.2 24 195-218 158-182 (201)
16 KOG1996 mRNA splicing factor [ 56.2 19 0.00042 34.6 4.7 26 78-103 116-141 (378)
17 PF14265 DUF4355: Domain of un 55.3 31 0.00066 27.9 5.3 20 86-105 48-67 (125)
18 PRK12705 hypothetical protein; 54.6 21 0.00046 36.4 5.1 13 84-96 95-107 (508)
19 PF04210 MtrG: Tetrahydrometha 53.3 98 0.0021 23.5 8.9 58 79-166 11-68 (70)
20 PF05884 ZYG-11_interact: Inte 52.6 1E+02 0.0022 29.5 8.9 19 182-201 140-158 (299)
21 COG4818 Predicted membrane pro 50.4 52 0.0011 26.6 5.6 17 192-208 69-85 (105)
22 COG2991 Uncharacterized protei 49.1 19 0.00041 27.6 2.8 35 216-252 4-41 (77)
23 PF01956 DUF106: Integral memb 48.9 84 0.0018 26.7 7.2 19 80-98 43-61 (168)
24 PF12737 Mating_C: C-terminal 47.1 20 0.00043 35.8 3.4 25 79-103 394-418 (419)
25 PF03154 Atrophin-1: Atrophin- 45.8 14 0.00031 40.3 2.3 15 82-96 580-597 (982)
26 PF03154 Atrophin-1: Atrophin- 45.6 17 0.00037 39.6 2.9 8 99-106 734-741 (982)
27 PF11471 Sugarporin_N: Maltopo 45.6 44 0.00096 24.4 4.2 22 86-107 31-52 (60)
28 KOG4721 Serine/threonine prote 45.5 22 0.00048 37.4 3.6 16 97-112 452-467 (904)
29 PF13863 DUF4200: Domain of un 45.4 54 0.0012 26.2 5.3 21 83-103 17-37 (126)
30 PF01956 DUF106: Integral memb 43.5 46 0.00099 28.3 4.8 11 80-90 50-60 (168)
31 PF14265 DUF4355: Domain of un 43.5 32 0.00069 27.8 3.6 37 78-115 47-83 (125)
32 KOG4721 Serine/threonine prote 43.3 19 0.0004 38.0 2.6 22 87-108 449-470 (904)
33 PF10205 KLRAQ: Predicted coil 43.3 65 0.0014 26.1 5.2 27 80-106 33-62 (102)
34 PF10166 DUF2368: Uncharacteri 42.1 2.1E+02 0.0045 24.1 10.0 15 185-199 76-90 (131)
35 PF03904 DUF334: Domain of unk 41.1 2.9E+02 0.0064 25.5 13.2 17 139-155 141-157 (230)
36 PF04281 Tom22: Mitochondrial 41.0 90 0.0019 26.5 6.0 20 177-196 93-112 (137)
37 KOG1690 emp24/gp25L/p24 family 40.2 81 0.0018 28.7 5.9 26 82-108 144-170 (215)
38 PF06476 DUF1090: Protein of u 39.0 64 0.0014 26.5 4.7 21 84-104 67-87 (115)
39 cd07912 Tweety_N N-terminal do 38.6 1.7E+02 0.0037 29.2 8.5 30 142-171 199-228 (418)
40 PF10268 Tmemb_161AB: Predicte 38.1 2.9E+02 0.0063 28.2 10.1 72 138-209 88-163 (486)
41 PF14851 FAM176: FAM176 family 37.6 34 0.00073 29.6 3.0 13 92-104 121-133 (153)
42 PF03938 OmpH: Outer membrane 37.4 77 0.0017 26.2 5.1 13 128-140 140-152 (158)
43 PF00816 Histone_HNS: H-NS his 37.4 55 0.0012 25.1 4.0 37 80-116 1-39 (93)
44 PF06476 DUF1090: Protein of u 37.1 47 0.001 27.2 3.7 21 78-98 68-88 (115)
45 PF05178 Kri1: KRI1-like famil 36.3 47 0.001 26.7 3.5 15 84-98 3-17 (101)
46 PF07795 DUF1635: Protein of u 36.0 62 0.0013 29.6 4.5 12 85-96 24-35 (214)
47 PRK10780 periplasmic chaperone 35.8 95 0.0021 26.4 5.5 14 83-96 86-99 (165)
48 PRK01026 tetrahydromethanopter 35.8 2.1E+02 0.0045 22.2 9.9 62 78-169 13-74 (77)
49 PLN03181 glycosyltransferase; 35.7 41 0.00088 33.8 3.6 51 78-128 334-397 (453)
50 PF06305 DUF1049: Protein of u 35.1 53 0.0012 23.4 3.3 22 83-104 44-65 (68)
51 KOG2881 Predicted membrane pro 33.8 28 0.00061 32.9 2.0 20 86-105 160-179 (294)
52 KOG0065 Pleiotropic drug resis 33.3 1.2E+02 0.0025 34.8 6.9 105 139-250 1147-1272(1391)
53 PF06936 Selenoprotein_S: Sele 33.0 85 0.0018 28.0 4.9 21 82-102 89-109 (190)
54 PF05297 Herpes_LMP1: Herpesvi 32.4 15 0.00032 35.3 0.0 51 177-228 103-154 (381)
55 PF05988 DUF899: Bacterial pro 31.6 54 0.0012 29.8 3.4 26 78-103 8-33 (211)
56 COG4064 MtrG Tetrahydromethano 31.3 2.4E+02 0.0052 21.5 8.3 23 145-167 50-72 (75)
57 PF12737 Mating_C: C-terminal 30.7 50 0.0011 32.9 3.4 25 85-109 393-417 (419)
58 KOG3866 DNA-binding protein of 30.6 63 0.0014 31.5 3.8 30 75-104 341-370 (442)
59 PF05529 Bap31: B-cell recepto 30.3 92 0.002 27.0 4.6 22 83-104 157-178 (192)
60 PF14991 MLANA: Protein melan- 30.1 10 0.00022 31.4 -1.4 30 179-208 27-59 (118)
61 PF04201 TPD52: Tumour protein 29.9 2.1E+02 0.0046 25.0 6.7 29 79-107 28-56 (162)
62 KOG3231 Predicted assembly/vac 29.5 1.2E+02 0.0026 27.0 5.0 25 80-104 18-42 (208)
63 PF06673 L_lactis_ph-MCP: Lact 29.4 46 0.00099 30.6 2.6 14 85-98 19-32 (347)
64 PF13863 DUF4200: Domain of un 29.3 96 0.0021 24.7 4.3 24 81-104 22-45 (126)
65 PF10716 NdhL: NADH dehydrogen 29.2 1.6E+02 0.0035 22.9 5.2 40 179-218 22-61 (81)
66 PF07334 IFP_35_N: Interferon- 29.2 72 0.0016 24.5 3.3 15 84-98 11-25 (76)
67 KOG2668 Flotillins [Intracellu 28.7 59 0.0013 32.0 3.4 12 85-96 268-279 (428)
68 PF05082 Rop-like: Rop-like; 28.6 55 0.0012 24.5 2.5 18 130-147 25-42 (66)
69 PF05988 DUF899: Bacterial pro 28.6 1.1E+02 0.0023 28.0 4.8 28 77-104 14-41 (211)
70 TIGR02976 phageshock_pspB phag 28.6 1.4E+02 0.003 22.8 4.7 25 80-104 38-62 (75)
71 PF02344 Myc-LZ: Myc leucine z 28.0 1.6E+02 0.0035 19.1 4.1 11 96-106 13-23 (32)
72 TIGR03752 conj_TIGR03752 integ 27.8 86 0.0019 31.9 4.4 29 79-107 68-96 (472)
73 KOG3879 Predicted membrane pro 27.7 78 0.0017 29.5 3.8 25 204-228 50-74 (267)
74 PF05278 PEARLI-4: Arabidopsis 27.7 1.2E+02 0.0027 28.5 5.2 20 85-104 205-224 (269)
75 PF09278 MerR-DNA-bind: MerR, 27.5 1.1E+02 0.0024 21.4 3.9 22 82-103 41-62 (65)
76 PRK10929 putative mechanosensi 27.1 9.6E+02 0.021 27.2 13.2 16 132-148 772-787 (1109)
77 COG4372 Uncharacterized protei 27.0 1.2E+02 0.0025 30.5 5.1 9 99-107 215-223 (499)
78 KOG3248 Transcription factor T 26.3 72 0.0016 31.3 3.4 8 118-125 288-295 (421)
79 TIGR00986 3a0801s05tom22 mitoc 26.3 2.2E+02 0.0048 24.5 6.0 20 177-196 91-110 (145)
80 KOG4552 Vitamin-D-receptor int 26.2 1.3E+02 0.0028 27.8 4.8 21 84-104 71-91 (272)
81 PF07047 OPA3: Optic atrophy 3 26.1 1.2E+02 0.0026 25.3 4.4 23 83-105 104-126 (134)
82 PF04193 PQ-loop: PQ loop repe 26.0 2.1E+02 0.0046 19.7 5.1 39 189-227 9-49 (61)
83 PF11853 DUF3373: Protein of u 26.0 61 0.0013 33.0 3.1 24 81-104 28-51 (489)
84 PF11214 Med2: Mediator comple 25.8 75 0.0016 25.9 3.0 11 80-90 79-89 (105)
85 PRK12377 putative replication 25.7 2E+02 0.0043 26.4 6.1 40 77-117 26-66 (248)
86 PHA02148 hypothetical protein 25.6 2.2E+02 0.0047 23.0 5.4 14 97-110 58-71 (110)
87 PRK00888 ftsB cell division pr 25.5 1.7E+02 0.0036 23.5 5.0 9 89-97 46-54 (105)
88 TIGR01149 mtrG N5-methyltetrah 25.1 3.1E+02 0.0067 20.8 9.0 57 80-166 12-68 (70)
89 KOG1962 B-cell receptor-associ 24.7 1.3E+02 0.0028 27.5 4.6 23 80-102 158-180 (216)
90 PRK10794 cell wall shape-deter 24.6 6.5E+02 0.014 24.4 10.1 58 149-207 15-73 (370)
91 KOG3866 DNA-binding protein of 24.5 83 0.0018 30.7 3.5 22 86-107 345-366 (442)
92 KOG0933 Structural maintenance 24.4 1.8E+02 0.0038 32.6 6.2 32 76-107 673-704 (1174)
93 KOG4010 Coiled-coil protein TP 23.9 1.8E+02 0.0039 26.3 5.2 29 83-111 47-75 (208)
94 COG5220 TFB3 Cdk activating ki 23.6 2E+02 0.0044 27.0 5.7 31 77-107 158-188 (314)
95 PF06673 L_lactis_ph-MCP: Lact 23.6 99 0.0021 28.5 3.6 19 79-97 20-38 (347)
96 PF10779 XhlA: Haemolysin XhlA 23.5 2.1E+02 0.0046 21.0 4.9 8 91-98 20-27 (71)
97 PRK10263 DNA translocase FtsK; 23.4 77 0.0017 36.2 3.4 11 239-249 141-151 (1355)
98 TIGR02051 MerR Hg(II)-responsi 23.3 2.1E+02 0.0046 23.1 5.3 25 81-105 80-104 (124)
99 KOG1691 emp24/gp25L/p24 family 23.3 3.3E+02 0.0072 24.8 6.9 19 146-164 177-195 (210)
100 COG1422 Predicted membrane pro 23.2 4.7E+02 0.01 23.7 7.8 19 79-97 74-92 (201)
101 COG4372 Uncharacterized protei 23.2 1.5E+02 0.0032 29.8 4.9 24 82-105 205-228 (499)
102 KOG4279 Serine/threonine prote 23.1 2.3E+02 0.005 31.0 6.6 18 81-98 1106-1123(1226)
103 PF00146 NADHdh: NADH dehydrog 22.9 3.7E+02 0.0079 25.3 7.5 31 189-219 266-296 (311)
104 COG3671 Predicted membrane pro 22.8 2.9E+02 0.0062 23.2 5.9 32 140-171 19-50 (125)
105 PF06570 DUF1129: Protein of u 22.8 5.2E+02 0.011 22.6 10.0 12 161-172 93-104 (206)
106 KOG2391 Vacuolar sorting prote 22.7 1.6E+02 0.0034 28.9 5.0 11 94-104 235-245 (365)
107 KOG2174 Leptin receptor gene-r 22.7 1.6E+02 0.0035 24.9 4.4 92 157-257 16-107 (131)
108 PF05529 Bap31: B-cell recepto 22.6 1.5E+02 0.0033 25.6 4.6 19 80-98 161-179 (192)
109 PF15390 DUF4613: Domain of un 22.6 1.8E+02 0.0039 30.7 5.6 26 80-105 544-569 (671)
110 KOG0614 cGMP-dependent protein 22.2 1.5E+02 0.0033 31.1 5.0 26 80-105 31-56 (732)
111 PF10550 Toxin_36: Conantokin- 22.2 1E+02 0.0023 16.5 2.1 11 87-97 3-13 (15)
112 CHL00032 ndhA NADH dehydrogena 22.2 7.4E+02 0.016 24.2 10.1 28 192-219 318-345 (363)
113 PF15086 UPF0542: Uncharacteri 22.0 1.5E+02 0.0033 22.7 3.8 15 85-99 44-58 (74)
114 KOG3859 Septins (P-loop GTPase 21.8 1.7E+02 0.0038 28.4 5.0 9 88-96 334-342 (406)
115 PF00957 Synaptobrevin: Synapt 21.7 3.5E+02 0.0077 20.2 9.6 7 146-152 63-69 (89)
116 PLN03140 ABC transporter G fam 21.4 4.6E+02 0.01 30.4 9.1 37 183-222 1300-1336(1470)
117 cd04769 HTH_MerR2 Helix-Turn-H 21.3 2E+02 0.0043 22.9 4.7 25 82-106 84-108 (116)
118 KOG3915 Transcription regulato 21.3 1.7E+02 0.0036 30.1 5.0 23 82-104 521-544 (641)
119 PF11831 Myb_Cef: pre-mRNA spl 21.1 1.4E+02 0.0031 27.1 4.2 16 97-112 117-132 (231)
120 KOG1962 B-cell receptor-associ 21.1 1.8E+02 0.0039 26.6 4.8 27 81-107 152-178 (216)
121 KOG2881 Predicted membrane pro 21.1 69 0.0015 30.4 2.2 27 77-103 158-184 (294)
122 cd04770 HTH_HMRTR Helix-Turn-H 21.1 2.1E+02 0.0046 22.7 4.8 23 82-104 84-106 (123)
123 PF08248 Tryp_FSAP: Tryptophyl 20.6 64 0.0014 16.4 1.0 9 119-127 2-11 (12)
124 cd00225 API3 Ascaris pepsin in 20.5 2.2E+02 0.0048 24.7 5.0 28 78-105 35-66 (159)
125 COG3074 Uncharacterized protei 20.4 1.6E+02 0.0034 22.6 3.5 16 81-96 29-44 (79)
126 KOG2507 Ubiquitin regulatory p 20.2 3E+02 0.0066 28.0 6.5 7 182-188 404-410 (506)
127 PRK10452 multidrug efflux syst 20.1 38 0.00082 27.9 0.2 47 151-200 3-50 (120)
No 1
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.2e-90 Score=628.46 Aligned_cols=242 Identities=52% Similarity=0.918 Sum_probs=220.8
Q ss_pred CCCCCCCCCCCC-cCCCCCCCccccccCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCccc-
Q 024136 1 MAGRYDSNPFDE-EEVNPFSDPAVRGKSSGQSRFGGGGFFTTNSASVPPATNSRLSPLPHEPAGFNFERDAPIDIPLDT- 78 (272)
Q Consensus 1 M~~~~d~nPf~~-~~~NPF~dp~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~~~~~~~~~- 78 (272)
|+ +||+|||+| +++|||+||+|+|+.++ +.++|.+++++.+ +.++|+++|.+.
T Consensus 1 ~s-~~d~NPFadp~~~NPF~dp~~~q~~~~----------------------~~~~p~~~~~~~~--~~~~tv~~P~~~~ 55 (313)
T KOG3088|consen 1 MS-RYDPNPFAEPELVNPFADPAVVQPAST----------------------PPLSPLPPEPAPS--DQGPTVDIPLDSP 55 (313)
T ss_pred CC-CCCCCCCCCcccCCCCCCccccCCccC----------------------CCCCCCCCCCCCC--CCCCccccCCCCC
Confidence 66 999999999 88999999999987333 2233343344322 245677777776
Q ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCCCC------CCCccccccccccchhhHHHHHHHHH
Q 024136 79 ---AADLKKKEKELQAKEAELRRREQDVRRKEEAAARAGIVLEEKNWP------PFFPIIHHDIANEIPIHLQRLQYVAF 149 (272)
Q Consensus 79 ---~~el~~ke~EL~~rE~EL~rRE~el~~re~~~~~~g~~~~~~NwP------pf~P~~y~DI~~eIP~~~q~~v~~~y 149 (272)
.+|+++||+||.||||||+|||+||+|||++++++|..+++|||| |++|||||||++|||+|+||+||++|
T Consensus 56 ~~~a~~~~~kq~eL~~rqeEL~Rke~ELdRREr~~a~~g~~~~~nNWPPLP~~~pv~PcfyqD~s~EIPv~~Qk~vk~~y 135 (313)
T KOG3088|consen 56 STQAKDLAKKQAELLKKQEELRRKEQELDRRERALARAGIVIRENNWPPLPSFIPVFPCFYQDISNEIPVEFQKLVKRAY 135 (313)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccCcccccCCCCCCCCCCcccccccccccccCHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999 57899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHhhhhhhhhHhhHHHHHHhhcccchhHHHHHHHHHHHHHHHHh
Q 024136 150 ATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIF 229 (272)
Q Consensus 150 ~~wl~~~~~L~~N~i~~~~~~i~g~~~~~f~laily~l~g~P~sf~~WYrplY~A~r~dss~~f~~FF~~~~~~i~f~v~ 229 (272)
|+||++++||+||+++|+++||+|+++.+|+|||||+++|+||||+|||||||||||+||||+|+||||+|++|++|||+
T Consensus 136 ylwm~~~~tL~~Niia~la~~i~g~~~~~f~Laii~fllftPcsyVcWyRPlYkAFRsDSSf~F~~FFF~y~~q~~~~v~ 215 (313)
T KOG3088|consen 136 YLWMGLVLTLLWNIIACLAWWIKGGGGTIFGLAIIWFLLFTPCSYVCWYRPLYKAFRTDSSFNFGAFFFTYFFQIVFCVF 215 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhCCceeeEeehHHHHHhccccchhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCccccCCcceehHHHHHhhcCCceeeeeeeecccccc
Q 024136 230 ASVAPPIIFKGKSLTGVLPAVDVMGDHALVGVRILQPNLTFL 271 (272)
Q Consensus 230 ~aIG~P~~~~g~g~~G~I~ai~~~~~~~~vgi~~~i~a~~~~ 271 (272)
+|||++ |||.||||.||+.++.+.+|||+|+|+|++|.
T Consensus 216 qAvgf~----g~~~~G~i~ai~~~~~~i~v~i~m~i~a~~Ft 253 (313)
T KOG3088|consen 216 QAVGFP----GWGLCGWIPAIDVLSGNIAVGILMLIGAGLFT 253 (313)
T ss_pred HHHccC----CcchhhhhhHhhccCcchHHHHHHHHHHHHHH
Confidence 999955 99999999999999999999999999999873
No 2
>PF04144 SCAMP: SCAMP family; InterPro: IPR007273 In vertebrates, secretory carrier membrane proteins (SCAMPs) 1-3 constitute a family of putative membrane-trafficking proteins composed of cytoplasmic N-terminal sequences with NPF repeats, four central transmembrane regions (TMRs), and a cytoplasmic tail. SCAMPs probably function in endocytosis by recruiting EH-domain proteins to the N-terminal NPF repeats but may have additional functions mediated by their other sequences [].; GO: 0015031 protein transport, 0016021 integral to membrane
Probab=100.00 E-value=1.7e-53 Score=370.39 Aligned_cols=150 Identities=41% Similarity=0.830 Sum_probs=145.2
Q ss_pred CcCCCCCCC------ccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHhhhh
Q 024136 118 EEKNWPPFF------PIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVP 191 (272)
Q Consensus 118 ~~~NwPpf~------P~~y~DI~~eIP~~~q~~v~~~y~~wl~~~~~L~~N~i~~~~~~i~g~~~~~f~laily~l~g~P 191 (272)
|+|||||++ ||+||||++|||+++||+||++|++||++++||++|+++|++.++.|+++++|+||++|+++|+|
T Consensus 1 ~~~NwPp~~~~~~~~P~~y~di~~eIP~~~q~~v~~~y~~w~~~~~~l~~N~i~~~~~~~~~~~~~~~~lai~y~~~~~P 80 (177)
T PF04144_consen 1 RENNWPPFPKFCCIKPCFYHDISEEIPEEFQRLVKRAYYLWLFLAITLFWNFIACLALLIAGGSGSDFGLAILYLLLGTP 80 (177)
T ss_pred CCCCCCCCccccCCCCeEEeCHhHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceehHHHHHHHHHhH
Confidence 579999999 99999999999999999999999999999999999999999999877778899999999999999
Q ss_pred hhhhHhhHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhhccCCccccCCcceehHHHHHhhcCCceeeeeeeecccccc
Q 024136 192 GAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKGKSLTGVLPAVDVMGDHALVGVRILQPNLTFL 271 (272)
Q Consensus 192 ~sf~~WYrplY~A~r~dss~~f~~FF~~~~~~i~f~v~~aIG~P~~~~g~g~~G~I~ai~~~~~~~~vgi~~~i~a~~~~ 271 (272)
+||+|||||||||+|+|||++|++||+++++|++||++++||+| ++|+||||+||+++++|+.+||+++|++++|.
T Consensus 81 ~sf~~wyrplY~A~r~dss~~f~~ff~~~~~~i~f~i~~aIG~p----~~G~~G~i~ai~~~~~~~~vgi~~~I~a~~w~ 156 (177)
T PF04144_consen 81 ASFFCWYRPLYKAFRTDSSFRFMWFFFFFFVHIIFCIIMAIGIP----GWGSCGWITAIDVFSNNKAVGILMLIVAILWT 156 (177)
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhccc----cccHHHHHHHHHHHccCchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999 89999999999999999999999999998873
No 3
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=2.3e-12 Score=119.14 Aligned_cols=86 Identities=28% Similarity=0.422 Sum_probs=68.1
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc---CCCCCCCccccccccccchhhHHHHH--HHHHH
Q 024136 76 LDTAADLKKKEKELQAKEAELRRREQDVRRKEEAAARAGIVLEE---KNWPPFFPIIHHDIANEIPIHLQRLQ--YVAFA 150 (272)
Q Consensus 76 ~~~~~el~~ke~EL~~rE~EL~rRE~el~~re~~~~~~g~~~~~---~NwPpf~P~~y~DI~~eIP~~~q~~v--~~~y~ 150 (272)
..+++||+||||||+|||+||+|||+++++-..+.+..||++.+ +-.|=||--|-.||.+|..+-..++. +++|.
T Consensus 63 ~~kq~eL~~rqeEL~Rke~ELdRREr~~a~~g~~~~~nNWPPLP~~~pv~PcfyqD~s~EIPv~~Qk~vk~~yylwm~~~ 142 (313)
T KOG3088|consen 63 AKKQAELLKKQEELRRKEQELDRRERALARAGIVIRENNWPPLPSFIPVFPCFYQDISNEIPVEFQKLVKRAYYLWMGLV 142 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccCcccccCCCCCCCCCCcccccccccccccCHHHHHHHHHHHHHHHHHH
Confidence 34789999999999999999999999999866677788999776 46777899999999999988777665 44454
Q ss_pred HHHH--HHHHHHH
Q 024136 151 TYLG--LFLCLLW 161 (272)
Q Consensus 151 ~wl~--~~~~L~~ 161 (272)
+-|+ ...||.|
T Consensus 143 ~tL~~Niia~la~ 155 (313)
T KOG3088|consen 143 LTLLWNIIACLAW 155 (313)
T ss_pred HHHHHHHHHHHHH
Confidence 4333 3455555
No 4
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=80.67 E-value=11 Score=31.05 Aligned_cols=69 Identities=20% Similarity=0.274 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHhhhhhhhhHhhHHHHHHhhcccchhH
Q 024136 142 QRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKF 213 (272)
Q Consensus 142 q~~v~~~y~~wl~~~~~L~~N~i~~~~~~i~g~~~~~f~laily~l~g~P~sf~~WYrplY~A~r~dss~~f 213 (272)
.|.+-.+..+.++-++.+++.++.. +--+.+.....+.+-++=+++++|+.|.+ |-+|.|.|--..+.|
T Consensus 41 wK~I~la~~Lli~G~~li~~g~l~~-~~~i~~~~~~~~~llilG~L~fIPG~Y~~--~i~y~a~rg~~Gysf 109 (115)
T PF05915_consen 41 WKSIALAVFLLIFGTVLIIIGLLLF-FGHIDGDRDRGWALLILGILCFIPGFYHT--RIAYYAWRGYKGYSF 109 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hcccCCCCcccchHHHHHHHHHhccHHHH--HHHHHHHcCCCCCCH
Confidence 4444555444443333333332221 11123444556777777778999999987 577888886555443
No 5
>KOG3966 consensus p53-mediated apoptosis protein EI24/PIG8 [Signal transduction mechanisms; Defense mechanisms]
Probab=75.90 E-value=9.3 Score=36.37 Aligned_cols=66 Identities=17% Similarity=0.325 Sum_probs=37.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hcCC----Ch-h---HHHHHHHH-HHhhhhhhhh------HhhH
Q 024136 139 IHLQRLQYVAFATYLGLFLCLLWNIVAVTTAW----IKGE----GV-K---IWFLAIIY-FIAGVPGAYV------LWYR 199 (272)
Q Consensus 139 ~~~q~~v~~~y~~wl~~~~~L~~N~i~~~~~~----i~g~----~~-~---~f~laily-~l~g~P~sf~------~WYr 199 (272)
..++...+..+..|+ .+.|+||..--++-+ +.|. ++ - .++|+.++ ++...|+.+. +|+-
T Consensus 89 ~~F~cc~wngg~~w~--s~llf~~v~ipiL~~~~s~f~g~~s~h~~vw~wl~~~ls~lfg~iwVlPiF~lSkiV~alWF~ 166 (360)
T KOG3966|consen 89 DSFLCCLWNGGAMWI--SFLLFWQVCIPILGLFFSFFDGTDSGHNVVWGWLHPILSLLFGYIWVLPIFFLSKIVQALWFS 166 (360)
T ss_pred HHHHHHHHhcchHHH--HHHHHHHHHHHHHHHHHheeccCCccccchHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777788888886 457899987554322 3331 11 1 13444433 3444565554 7888
Q ss_pred HHHHHhh
Q 024136 200 PLYRAFR 206 (272)
Q Consensus 200 plY~A~r 206 (272)
-+=+|+.
T Consensus 167 DIa~aa~ 173 (360)
T KOG3966|consen 167 DIAGAAM 173 (360)
T ss_pred HHHHHHH
Confidence 7776644
No 6
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=71.75 E-value=36 Score=31.02 Aligned_cols=10 Identities=10% Similarity=0.125 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 024136 143 RLQYVAFATY 152 (272)
Q Consensus 143 ~~v~~~y~~w 152 (272)
++..-...+|
T Consensus 217 ~~~~al~~~~ 226 (262)
T PF14257_consen 217 RFRDALKNGW 226 (262)
T ss_pred HHHHHHHHHH
Confidence 4434444444
No 7
>PRK13741 conjugal transfer entry exclusion protein TraS; Provisional
Probab=71.60 E-value=46 Score=29.38 Aligned_cols=18 Identities=6% Similarity=0.289 Sum_probs=13.7
Q ss_pred CCcceehHHHHHhhcCCc
Q 024136 240 GKSLTGVLPAVDVMGDHA 257 (272)
Q Consensus 240 g~g~~G~I~ai~~~~~~~ 257 (272)
.+-++++.++|+.+++++
T Consensus 151 RYqlsa~~Svi~~fk~~k 168 (171)
T PRK13741 151 RYQLSAIISVIGLFKKEK 168 (171)
T ss_pred hhhHHHHHHHHHHHHhcc
Confidence 677888888888887654
No 8
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=68.65 E-value=68 Score=26.74 Aligned_cols=12 Identities=25% Similarity=0.409 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHH
Q 024136 157 LCLLWNIVAVTT 168 (272)
Q Consensus 157 ~~L~~N~i~~~~ 168 (272)
+++++|++.+++
T Consensus 79 ls~v~Nilvsv~ 90 (142)
T PF11712_consen 79 LSTVFNILVSVF 90 (142)
T ss_pred HHHHHHHHHHHH
Confidence 678899987644
No 9
>PRK11098 microcin B17 transporter; Reviewed
Probab=67.41 E-value=42 Score=33.33 Aligned_cols=68 Identities=24% Similarity=0.488 Sum_probs=37.1
Q ss_pred ccchhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhh-cCCChhHH-------HHHHHHHHhhhhhhhhHhhHHHHH
Q 024136 135 NEIPIHLQRLQ---YVAFATYLGLFLCLLWNIVAVTTAWI-KGEGVKIW-------FLAIIYFIAGVPGAYVLWYRPLYR 203 (272)
Q Consensus 135 ~eIP~~~q~~v---~~~y~~wl~~~~~L~~N~i~~~~~~i-~g~~~~~f-------~laily~l~g~P~sf~~WYrplY~ 203 (272)
++.|...-+.. .+++|+|...|..++. .+... +..+-+.| .+.+.+...++-...--|||+.|+
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~s~~~w~~w~lLg~~~il~l~l~~v~l~V~~n~w~~~Fyd 120 (409)
T PRK11098 46 GQLPIGAARFWSPDFLWFYAYYLVCVGLFA-----GFWFIYSPHPWQRWSILGSALIIFVTWFLVQVSVAVNAWYAPFYD 120 (409)
T ss_pred cCCCcchhHhcCchHHHHHHHHHHHHHHHh-----hhhcccCcchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHH
Confidence 44454444333 5677888665554332 12222 22232222 223344455566666789999999
Q ss_pred Hhhc
Q 024136 204 AFRT 207 (272)
Q Consensus 204 A~r~ 207 (272)
|+.+
T Consensus 121 aLq~ 124 (409)
T PRK11098 121 LIQT 124 (409)
T ss_pred HHHH
Confidence 9986
No 10
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=66.67 E-value=11 Score=36.38 Aligned_cols=30 Identities=37% Similarity=0.633 Sum_probs=16.6
Q ss_pred HHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH
Q 024136 81 DLKKKEKELQ--------AKEAELRRREQDVRRKEEAA 110 (272)
Q Consensus 81 el~~ke~EL~--------~rE~EL~rRE~el~~re~~~ 110 (272)
++++||+|++ .+|+||++.|++|..+.+.+
T Consensus 334 e~qrkEee~rqmFvqrvkekE~elke~Ekel~~kf~~l 371 (406)
T KOG3859|consen 334 ELQRKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDRL 371 (406)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666643 35666666666665544433
No 11
>KOG3312 consensus Predicted membrane protein [Function unknown]
Probab=63.48 E-value=45 Score=29.11 Aligned_cols=33 Identities=24% Similarity=0.453 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhc
Q 024136 81 DLKKKEKELQAKEAEL-----RRREQDVRRKEEAAARA 113 (272)
Q Consensus 81 el~~ke~EL~~rE~EL-----~rRE~el~~re~~~~~~ 113 (272)
|.+|+.+.|++|.+|. +...+.+.|.|+.+.+.
T Consensus 42 ~vdK~sKKLE~~K~~~~~s~~k~~kkKieR~Ee~LK~~ 79 (186)
T KOG3312|consen 42 EVDKQSKKLEKKKEENGDSNDKSKKKKIERVEEKLKNN 79 (186)
T ss_pred HHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcc
Confidence 5666667777776665 12333444555544443
No 12
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=63.47 E-value=68 Score=31.37 Aligned_cols=9 Identities=44% Similarity=0.608 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 024136 88 ELQAKEAEL 96 (272)
Q Consensus 88 EL~~rE~EL 96 (272)
+|+|+|+||
T Consensus 236 slkRt~EeL 244 (365)
T KOG2391|consen 236 SLKRTEEEL 244 (365)
T ss_pred HHHhhHHHH
Confidence 344444444
No 13
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=59.09 E-value=23 Score=32.18 Aligned_cols=26 Identities=15% Similarity=0.129 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024136 146 YVAFATYLGLFLCLLWNIVAVTTAWI 171 (272)
Q Consensus 146 ~~~y~~wl~~~~~L~~N~i~~~~~~i 171 (272)
|.+=++-|+..+.++...+..++.++
T Consensus 187 R~~G~llmf~G~~~~~~~l~~l~~~~ 212 (248)
T PF07787_consen 187 RFIGWLLMFIGFFLLFSPLYTLVDWI 212 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33333345555666666666655554
No 14
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=58.31 E-value=12 Score=34.14 Aligned_cols=26 Identities=42% Similarity=0.740 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHH
Q 024136 80 ADLKKKEKELQAKEAELRR--REQDVRR 105 (272)
Q Consensus 80 ~el~~ke~EL~~rE~EL~r--RE~el~~ 105 (272)
+|+++|.++|+.|+.|-++ ||.|+++
T Consensus 168 ae~erkRk~~e~r~~~eRkr~re~eIea 195 (250)
T KOG1150|consen 168 AELERKRKELEARANEERKRQREEEIEA 195 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4677777777777766544 4555543
No 15
>COG1422 Predicted membrane protein [Function unknown]
Probab=57.32 E-value=69 Score=28.99 Aligned_cols=24 Identities=25% Similarity=0.508 Sum_probs=11.7
Q ss_pred hHhhHHHHHHhh-cccchhHHHHHH
Q 024136 195 VLWYRPLYRAFR-TESAMKFGWFFL 218 (272)
Q Consensus 195 ~~WYrplY~A~r-~dss~~f~~FF~ 218 (272)
..|+-++|.-.. .|----.+|||+
T Consensus 158 ~~~~~~~~~~~~~~~~~gWi~WYfL 182 (201)
T COG1422 158 PTLFHILYHTAVFGDFLGWIGWYFL 182 (201)
T ss_pred HHhhhhhhhccccccchHHHHHHHH
Confidence 344555555544 333344555554
No 16
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=56.21 E-value=19 Score=34.57 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=15.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Q 024136 78 TAADLKKKEKELQAKEAELRRREQDV 103 (272)
Q Consensus 78 ~~~el~~ke~EL~~rE~EL~rRE~el 103 (272)
++.+-.++.+|+.|+.+|.++||++-
T Consensus 116 r~~~er~~~re~~r~~~e~eeRekre 141 (378)
T KOG1996|consen 116 RQRDERKQRRETAREVAEIEEREKRE 141 (378)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444556667777776776666543
No 17
>PF14265 DUF4355: Domain of unknown function (DUF4355)
Probab=55.34 E-value=31 Score=27.90 Aligned_cols=20 Identities=35% Similarity=0.526 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024136 86 EKELQAKEAELRRREQDVRR 105 (272)
Q Consensus 86 e~EL~~rE~EL~rRE~el~~ 105 (272)
+.|++.++++|+.+++++.+
T Consensus 48 ~~e~~~~~~el~~~~~e~~~ 67 (125)
T PF14265_consen 48 QEELEELEKELEELEAELAR 67 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 18
>PRK12705 hypothetical protein; Provisional
Probab=54.61 E-value=21 Score=36.40 Aligned_cols=13 Identities=23% Similarity=0.417 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 024136 84 KKEKELQAKEAEL 96 (272)
Q Consensus 84 ~ke~EL~~rE~EL 96 (272)
+|.++|++++++|
T Consensus 95 ~~~~~l~~~~~~l 107 (508)
T PRK12705 95 ARAEKLDNLENQL 107 (508)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 19
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=53.32 E-value=98 Score=23.49 Aligned_cols=58 Identities=14% Similarity=0.345 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCCCCCCCccccccccccchhhHHHHHHHHHHHHHHHHHH
Q 024136 79 AADLKKKEKELQAKEAELRRREQDVRRKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLC 158 (272)
Q Consensus 79 ~~el~~ke~EL~~rE~EL~rRE~el~~re~~~~~~g~~~~~~NwPpf~P~~y~DI~~eIP~~~q~~v~~~y~~wl~~~~~ 158 (272)
.+|.++-++.|+.-|+.++.-..|+.+|. | +..=|-+-++|.+-.++.+.
T Consensus 11 ~~~~~~i~~rLd~iEeKvEf~~~Ei~Qr~------G------------------------kkiGRDiGIlYG~v~Glii~ 60 (70)
T PF04210_consen 11 PDDFNEIMKRLDEIEEKVEFTNAEIAQRA------G------------------------KKIGRDIGILYGLVIGLIIF 60 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHH------h------------------------HHhhhHHHHHHHHHHHHHHH
Confidence 45667777778888888887777776654 2 11223457888888887777
Q ss_pred HHHHHHHH
Q 024136 159 LLWNIVAV 166 (272)
Q Consensus 159 L~~N~i~~ 166 (272)
+++..+.+
T Consensus 61 ~~~~~l~~ 68 (70)
T PF04210_consen 61 IIYIVLSS 68 (70)
T ss_pred HHHHHHHH
Confidence 77666554
No 20
>PF05884 ZYG-11_interact: Interactor of ZYG-11; InterPro: IPR008574 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=52.62 E-value=1e+02 Score=29.55 Aligned_cols=19 Identities=21% Similarity=0.060 Sum_probs=10.7
Q ss_pred HHHHHHhhhhhhhhHhhHHH
Q 024136 182 AIIYFIAGVPGAYVLWYRPL 201 (272)
Q Consensus 182 aily~l~g~P~sf~~WYrpl 201 (272)
|++...+.+|+...- |.+.
T Consensus 140 Aaila~iviP~~~~y-~ln~ 158 (299)
T PF05884_consen 140 AAILAYIVIPLIAYY-YLNK 158 (299)
T ss_pred HHHHHHHHHHHHHHh-hccc
Confidence 455555667766544 5554
No 21
>COG4818 Predicted membrane protein [Function unknown]
Probab=50.44 E-value=52 Score=26.62 Aligned_cols=17 Identities=41% Similarity=1.022 Sum_probs=15.0
Q ss_pred hhhhHhhHHHHHHhhcc
Q 024136 192 GAYVLWYRPLYRAFRTE 208 (272)
Q Consensus 192 ~sf~~WYrplY~A~r~d 208 (272)
.+|++|--++|||+|.+
T Consensus 69 ~a~iLwlv~mykAyrGe 85 (105)
T COG4818 69 AAFILWLVCMYKAYRGE 85 (105)
T ss_pred HHHHHHHHHHHHHHcCC
Confidence 37889999999999976
No 22
>COG2991 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.11 E-value=19 Score=27.57 Aligned_cols=35 Identities=26% Similarity=0.340 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHhhhccCCccccC---CcceehHHHHHh
Q 024136 216 FFLFYLLHIGFCIFASVAPPIIFKG---KSLTGVLPAVDV 252 (272)
Q Consensus 216 FF~~~~~~i~f~v~~aIG~P~~~~g---~g~~G~I~ai~~ 252 (272)
|++.|.+.+++.+-|+||. +++. .|+||=|.++..
T Consensus 4 ~lltFg~Fllvi~gMsiG~--I~krk~I~GSCGGi~alGi 41 (77)
T COG2991 4 FLLTFGIFLLVIAGMSIGY--IFKRKSIKGSCGGIAALGI 41 (77)
T ss_pred HHHHHHHHHHHHHHHhHhh--heeccccccccccHHhhcc
Confidence 5667777778888899995 3443 688998887643
No 23
>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function. Members are predicted to be integral membrane proteins.; GO: 0016020 membrane
Probab=48.95 E-value=84 Score=26.66 Aligned_cols=19 Identities=37% Similarity=0.546 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024136 80 ADLKKKEKELQAKEAELRR 98 (272)
Q Consensus 80 ~el~~ke~EL~~rE~EL~r 98 (272)
++.++++++++++.+|+++
T Consensus 43 ~~~~~~~~~~~~~~~~l~~ 61 (168)
T PF01956_consen 43 DKYQKRMKEFQKRYRELRK 61 (168)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556666777777777654
No 24
>PF12737 Mating_C: C-terminal domain of homeodomain 1; InterPro: IPR024441 Mating in fungi is controlled by the loci that determine the mating type of an individual, and only individuals with differing mating types can mate. Basidiomycete fungi have evolved a unique mating system, termed tetrapolar or bifactorial incompatibility, in which mating type is determined by two unlinked loci; compatibility at both loci is required for mating to occur. The multi-allelic tetrapolar mating system is considered to be a novel innovation that could have only evolved once, and is thus unique to the mushroom fungi. This domain is found in the C-terminal of some mating-type proteins.
Probab=47.08 E-value=20 Score=35.78 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 024136 79 AADLKKKEKELQAKEAELRRREQDV 103 (272)
Q Consensus 79 ~~el~~ke~EL~~rE~EL~rRE~el 103 (272)
.++++.|++||+..|+++++.|+||
T Consensus 394 ~~~~~AK~reL~eLeAq~~aL~AEL 418 (419)
T PF12737_consen 394 EAEREAKRRELEELEAQARALRAEL 418 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4567777777777777777766665
No 25
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=45.83 E-value=14 Score=40.27 Aligned_cols=15 Identities=47% Similarity=0.510 Sum_probs=8.2
Q ss_pred HHHHHHHH---HHHHHHH
Q 024136 82 LKKKEKEL---QAKEAEL 96 (272)
Q Consensus 82 l~~ke~EL---~~rE~EL 96 (272)
|.||.+|+ .|||+|.
T Consensus 580 LAkKRee~~ek~RReaEq 597 (982)
T PF03154_consen 580 LAKKREERVEKARREAEQ 597 (982)
T ss_pred HhhhhHHHHHHHHhhhhc
Confidence 55555553 4566665
No 26
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=45.64 E-value=17 Score=39.63 Aligned_cols=8 Identities=38% Similarity=0.891 Sum_probs=4.3
Q ss_pred HHHHHHHH
Q 024136 99 REQDVRRK 106 (272)
Q Consensus 99 RE~el~~r 106 (272)
|||||+.|
T Consensus 734 reReLrdR 741 (982)
T PF03154_consen 734 RERELRDR 741 (982)
T ss_pred HHHHHHHh
Confidence 45556544
No 27
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=45.59 E-value=44 Score=24.38 Aligned_cols=22 Identities=36% Similarity=0.424 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024136 86 EKELQAKEAELRRREQDVRRKE 107 (272)
Q Consensus 86 e~EL~~rE~EL~rRE~el~~re 107 (272)
|+.|+..|++|+.-|++++.-|
T Consensus 31 EqRLa~LE~rL~~ae~ra~~ae 52 (60)
T PF11471_consen 31 EQRLAALEQRLQAAEQRAQAAE 52 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555554433
No 28
>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]
Probab=45.50 E-value=22 Score=37.42 Aligned_cols=16 Identities=25% Similarity=0.505 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHh
Q 024136 97 RRREQDVRRKEEAAAR 112 (272)
Q Consensus 97 ~rRE~el~~re~~~~~ 112 (272)
+.||+||.+||+++.+
T Consensus 452 elkEkElaerEq~l~r 467 (904)
T KOG4721|consen 452 ELKEKELAEREQALER 467 (904)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3455666666655443
No 29
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=45.42 E-value=54 Score=26.20 Aligned_cols=21 Identities=29% Similarity=0.692 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024136 83 KKKEKELQAKEAELRRREQDV 103 (272)
Q Consensus 83 ~~ke~EL~~rE~EL~rRE~el 103 (272)
..+.+|.+++++.++.|+.+|
T Consensus 17 ~~kr~e~~~~~~~~~~~e~~L 37 (126)
T PF13863_consen 17 DTKREEIERREEQLKQREEEL 37 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 30
>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function. Members are predicted to be integral membrane proteins.; GO: 0016020 membrane
Probab=43.53 E-value=46 Score=28.29 Aligned_cols=11 Identities=27% Similarity=0.631 Sum_probs=5.0
Q ss_pred HHHHHHHHHHH
Q 024136 80 ADLKKKEKELQ 90 (272)
Q Consensus 80 ~el~~ke~EL~ 90 (272)
++++++.++++
T Consensus 50 ~~~~~~~~~l~ 60 (168)
T PF01956_consen 50 KEFQKRYRELR 60 (168)
T ss_pred HHHHHHHHHHH
Confidence 34444444444
No 31
>PF14265 DUF4355: Domain of unknown function (DUF4355)
Probab=43.46 E-value=32 Score=27.81 Aligned_cols=37 Identities=41% Similarity=0.536 Sum_probs=27.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 024136 78 TAADLKKKEKELQAKEAELRRREQDVRRKEEAAARAGI 115 (272)
Q Consensus 78 ~~~el~~ke~EL~~rE~EL~rRE~el~~re~~~~~~g~ 115 (272)
++.++.+++++|+.+++++.+++.....+. .+...|.
T Consensus 47 ~~~e~~~~~~el~~~~~e~~~~e~~~~~~~-~l~e~GL 83 (125)
T PF14265_consen 47 AQEELEELEKELEELEAELARRELRSEAKK-VLAEKGL 83 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCC
Confidence 346789999999999999998887655443 4445564
No 32
>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]
Probab=43.29 E-value=19 Score=37.98 Aligned_cols=22 Identities=41% Similarity=0.527 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024136 87 KELQAKEAELRRREQDVRRKEE 108 (272)
Q Consensus 87 ~EL~~rE~EL~rRE~el~~re~ 108 (272)
-+|+-||.||.+||+.|.+|..
T Consensus 449 ~qLelkEkElaerEq~l~rr~p 470 (904)
T KOG4721|consen 449 LQLELKEKELAEREQALERRCP 470 (904)
T ss_pred HHHHHHHHHHHHHHHHHHhhCC
Confidence 3567788888888888877764
No 33
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=43.26 E-value=65 Score=26.13 Aligned_cols=27 Identities=33% Similarity=0.498 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHH
Q 024136 80 ADLKKKEKELQAKEAELRR---REQDVRRK 106 (272)
Q Consensus 80 ~el~~ke~EL~~rE~EL~r---RE~el~~r 106 (272)
++|+.|+.+|.+.|+|++- |.++|.+|
T Consensus 33 e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kR 62 (102)
T PF10205_consen 33 EQLKEKEQALRKLEQENDSLTFRNQQLTKR 62 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888888753 55555443
No 34
>PF10166 DUF2368: Uncharacterised conserved protein (DUF2368); InterPro: IPR019319 This family is conserved from nematodes to humans. The function is not known.
Probab=42.15 E-value=2.1e+02 Score=24.08 Aligned_cols=15 Identities=40% Similarity=0.711 Sum_probs=10.6
Q ss_pred HHHhhhhhhhhHhhH
Q 024136 185 YFIAGVPGAYVLWYR 199 (272)
Q Consensus 185 y~l~g~P~sf~~WYr 199 (272)
+++=.+|++|+|-|+
T Consensus 76 ~l~PlvPL~fv~~Yq 90 (131)
T PF10166_consen 76 FLIPLVPLTFVLGYQ 90 (131)
T ss_pred hhhhHHHHHHHHHHH
Confidence 345567999999664
No 35
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=41.12 E-value=2.9e+02 Score=25.50 Aligned_cols=17 Identities=12% Similarity=0.038 Sum_probs=11.6
Q ss_pred hhHHHHHHHHHHHHHHH
Q 024136 139 IHLQRLQYVAFATYLGL 155 (272)
Q Consensus 139 ~~~q~~v~~~y~~wl~~ 155 (272)
+++|+.++.+|...-.+
T Consensus 141 E~y~k~~k~~~~gi~am 157 (230)
T PF03904_consen 141 EKYQKRQKSMYKGIGAM 157 (230)
T ss_pred HHHHHHHHHHHHhHHHH
Confidence 56677778888776443
No 36
>PF04281 Tom22: Mitochondrial import receptor subunit Tom22 ; InterPro: IPR005683 The mitochondrial protein translocase family, which is responsible for movement of nuclear encoded pre-proteins into mitochondria, is very complex with at least 19 components. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family represents the Tom22 proteins []. The N-terminal region of Tom22 has been shown to have chaperone-like activity, and the C-terminal region faces the intermembrane face []. ; GO: 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane
Probab=40.95 E-value=90 Score=26.53 Aligned_cols=20 Identities=25% Similarity=0.592 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHhhhhhhhhH
Q 024136 177 KIWFLAIIYFIAGVPGAYVL 196 (272)
Q Consensus 177 ~~f~laily~l~g~P~sf~~ 196 (272)
..|+++.-.+|+|+|+++-+
T Consensus 93 a~Wi~tTSallLgvPl~l~i 112 (137)
T PF04281_consen 93 ALWIVTTSALLLGVPLALEI 112 (137)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 46888888899999999854
No 37
>KOG1690 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.23 E-value=81 Score=28.70 Aligned_cols=26 Identities=31% Similarity=0.664 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 024136 82 LKKKEKELQAKEAELRRREQDVRR-KEE 108 (272)
Q Consensus 82 l~~ke~EL~~rE~EL~rRE~el~~-re~ 108 (272)
|.-|...|..|-++++ ||++++| ||+
T Consensus 144 l~~Rv~~L~~~~~~Ir-kEQ~~~R~RE~ 170 (215)
T KOG1690|consen 144 LEGRVRQLNSRLESIR-KEQNLQREREE 170 (215)
T ss_pred hHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 3334444444444443 6666644 554
No 38
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=39.03 E-value=64 Score=26.46 Aligned_cols=21 Identities=14% Similarity=0.536 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024136 84 KKEKELQAKEAELRRREQDVR 104 (272)
Q Consensus 84 ~ke~EL~~rE~EL~rRE~el~ 104 (272)
+++++...++.++.+||+||+
T Consensus 67 e~q~ki~~~~~kV~ere~eL~ 87 (115)
T PF06476_consen 67 ERQQKIAEKQQKVAEREAELK 87 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555554
No 39
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=38.57 E-value=1.7e+02 Score=29.21 Aligned_cols=30 Identities=10% Similarity=0.072 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024136 142 QRLQYVAFATYLGLFLCLLWNIVAVTTAWI 171 (272)
Q Consensus 142 q~~v~~~y~~wl~~~~~L~~N~i~~~~~~i 171 (272)
..+...=+|=|+.+.+.|++.++.|+++++
T Consensus 199 ~~~~~~E~~Rw~~~l~lL~~~lviC~~~l~ 228 (418)
T cd07912 199 DQVSLYESYRWLAYLGLLSLLLVICLVLLV 228 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455577788899999999999999977664
No 40
>PF10268 Tmemb_161AB: Predicted transmembrane protein 161AB; InterPro: IPR019395 This entry represents a family of conserved eukaryotic proteins. Members are putative transmembrane proteins but otherwise the function is not known.
Probab=38.05 E-value=2.9e+02 Score=28.19 Aligned_cols=72 Identities=13% Similarity=0.132 Sum_probs=39.0
Q ss_pred hhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHh-hcCCChhHHHHHHHHHHhhhhhhhhHhhHHHHHHhhccc
Q 024136 138 PIHLQRLQYVAFAT---YLGLFLCLLWNIVAVTTAW-IKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTES 209 (272)
Q Consensus 138 P~~~q~~v~~~y~~---wl~~~~~L~~N~i~~~~~~-i~g~~~~~f~laily~l~g~P~sf~~WYrplY~A~r~ds 209 (272)
|.....++..-||. |++...+....+-...-++ +.-.....+=+|++|+++.+-.+.-+++.-.=.-++++.
T Consensus 88 pv~~~d~l~L~~Y~ey~WLvdFav~~~~Vyl~tE~y~~~~~~~~e~Nisv~w~lL~v~F~lk~L~sLt~~yf~s~~ 163 (486)
T PF10268_consen 88 PVTPSDVLVLRYYTEYQWLVDFAVYALVVYLFTEVYYFFVPPSTEFNISVVWCLLVVFFALKVLFSLTRLYFSSEE 163 (486)
T ss_pred cccHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 44444444444443 8765554443333322122 111112334567888888777777788887666777654
No 41
>PF14851 FAM176: FAM176 family
Probab=37.57 E-value=34 Score=29.62 Aligned_cols=13 Identities=31% Similarity=0.552 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHH
Q 024136 92 KEAELRRREQDVR 104 (272)
Q Consensus 92 rE~EL~rRE~el~ 104 (272)
|++.|++||+.++
T Consensus 121 ~A~rlEeRe~iir 133 (153)
T PF14851_consen 121 RAQRLEERERIIR 133 (153)
T ss_pred HHHHHHHHHHHHH
Confidence 5666677777765
No 42
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=37.43 E-value=77 Score=26.22 Aligned_cols=13 Identities=23% Similarity=0.243 Sum_probs=6.7
Q ss_pred cccccccccchhh
Q 024136 128 IIHHDIANEIPIH 140 (272)
Q Consensus 128 ~~y~DI~~eIP~~ 140 (272)
++|+|=..||-.+
T Consensus 140 vly~~~~~DIT~~ 152 (158)
T PF03938_consen 140 VLYADPAYDITDE 152 (158)
T ss_dssp EEEE-TTSE-HHH
T ss_pred eEeeCCCCChHHH
Confidence 7777666566444
No 43
>PF00816 Histone_HNS: H-NS histone family Partial NMR structure.; InterPro: IPR001801 The histone-like nucleoid-structuring (H-NS) protein belongs to a family of bacterial proteins that play a role in the formation of nucleoid structure and affect gene expression under certain conditions [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2LEV_A 1HNS_A 1LR1_B 1HNR_A 1NI8_A 1OV9_A 2JR1_A 3NR7_A 2L93_A 2L92_A.
Probab=37.37 E-value=55 Score=25.13 Aligned_cols=37 Identities=30% Similarity=0.431 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhcCCC
Q 024136 80 ADLKKKEKELQAKEAELRRREQD--VRRKEEAAARAGIV 116 (272)
Q Consensus 80 ~el~~ke~EL~~rE~EL~rRE~e--l~~re~~~~~~g~~ 116 (272)
++|.+..++|++..++++++|++ +..-.+.++..|+.
T Consensus 1 ~eL~~~~~~l~~~~~~~~~~e~~~~~~~i~~~~~~~Gis 39 (93)
T PF00816_consen 1 KELEAQIKELEKEIEERRKQEREEAIAEIRELMAEYGIS 39 (93)
T ss_dssp -HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTT--
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 36777777777666666554333 33322344555644
No 44
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=37.09 E-value=47 Score=27.21 Aligned_cols=21 Identities=24% Similarity=0.510 Sum_probs=15.5
Q ss_pred chHHHHHHHHHHHHHHHHHHH
Q 024136 78 TAADLKKKEKELQAKEAELRR 98 (272)
Q Consensus 78 ~~~el~~ke~EL~~rE~EL~r 98 (272)
.+.+..+++.++..|++||++
T Consensus 68 ~q~ki~~~~~kV~ere~eL~e 88 (115)
T PF06476_consen 68 RQQKIAEKQQKVAEREAELKE 88 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455677788888888888854
No 45
>PF05178 Kri1: KRI1-like family; InterPro: IPR018034 The Kri1 protein is also known as KRR1-interacting protein 1. The Saccharomyces cerevisiae member of this family is found to be required for the assembly of preribosomal 40S subunits in the nucleolus []. KRR1 is highly expressed in dividing cells and its expression ceases almost completely when cells enter the stationary phase.
Probab=36.35 E-value=47 Score=26.66 Aligned_cols=15 Identities=60% Similarity=0.815 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHH
Q 024136 84 KKEKELQAKEAELRR 98 (272)
Q Consensus 84 ~ke~EL~~rE~EL~r 98 (272)
|+++|-.+|++||+|
T Consensus 3 RK~~Ek~~k~eElkr 17 (101)
T PF05178_consen 3 RKEEEKQEKEEELKR 17 (101)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555566666654
No 46
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=36.04 E-value=62 Score=29.55 Aligned_cols=12 Identities=25% Similarity=0.590 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHH
Q 024136 85 KEKELQAKEAEL 96 (272)
Q Consensus 85 ke~EL~~rE~EL 96 (272)
..|||+|+|+++
T Consensus 24 A~EElRk~eeqi 35 (214)
T PF07795_consen 24 ANEELRKREEQI 35 (214)
T ss_pred HHHHHHHHHHHH
Confidence 455566666554
No 47
>PRK10780 periplasmic chaperone; Provisional
Probab=35.85 E-value=95 Score=26.42 Aligned_cols=14 Identities=29% Similarity=0.418 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 024136 83 KKKEKELQAKEAEL 96 (272)
Q Consensus 83 ~~ke~EL~~rE~EL 96 (272)
+++++||.++++++
T Consensus 86 ~~~~~el~~~~~~~ 99 (165)
T PRK10780 86 TKLEKDVMAQRQTF 99 (165)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444444
No 48
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=35.78 E-value=2.1e+02 Score=22.16 Aligned_cols=62 Identities=18% Similarity=0.314 Sum_probs=40.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCCCCCCCccccccccccchhhHHHHHHHHHHHHHHHHH
Q 024136 78 TAADLKKKEKELQAKEAELRRREQDVRRKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFL 157 (272)
Q Consensus 78 ~~~el~~ke~EL~~rE~EL~rRE~el~~re~~~~~~g~~~~~~NwPpf~P~~y~DI~~eIP~~~q~~v~~~y~~wl~~~~ 157 (272)
..+|.++-.+.|+.-|+.++.-..|+.+|. | +..=|-+=++|..-+++.+
T Consensus 13 ~~~d~~~i~~rLD~iEeKVEftn~Ei~Qr~------G------------------------kkvGRDiGIlYG~viGlli 62 (77)
T PRK01026 13 DPKDFKEIQKRLDEIEEKVEFTNAEIFQRI------G------------------------KKVGRDIGILYGLVIGLLI 62 (77)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------h------------------------HHhhhHHHHHHHHHHHHHH
Confidence 345666666667777777777777776553 2 2222446788888888888
Q ss_pred HHHHHHHHHHHH
Q 024136 158 CLLWNIVAVTTA 169 (272)
Q Consensus 158 ~L~~N~i~~~~~ 169 (272)
++++..+..++.
T Consensus 63 ~~i~~~~~~~~~ 74 (77)
T PRK01026 63 VLVYIILSPIFM 74 (77)
T ss_pred HHHHHHHHHHHH
Confidence 777776665443
No 49
>PLN03181 glycosyltransferase; Provisional
Probab=35.72 E-value=41 Score=33.82 Aligned_cols=51 Identities=25% Similarity=0.268 Sum_probs=29.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHH-hcCCCCCcCCCCC------CCcc
Q 024136 78 TAADLKKKEKELQAKEAELRRREQDVR------RKEEAAA-RAGIVLEEKNWPP------FFPI 128 (272)
Q Consensus 78 ~~~el~~ke~EL~~rE~EL~rRE~el~------~re~~~~-~~g~~~~~~NwPp------f~P~ 128 (272)
+-+++.+|-+|++|+.+-|+||-+|-. .||++++ .+|......-||- |-||
T Consensus 334 ~~e~~~~~y~~~er~~~~lrrrhae~~~~~y~~~re~~~~~~~~~G~g~~R~PfvTHF~GC~pC 397 (453)
T PLN03181 334 RLDNITERYLEMEREDATLRRRHAEKVSERYAAFREEALKGPAGGGKGSWRRPFVTHFTGCQPC 397 (453)
T ss_pred HHHHHHHHHHHhhhcchhhhhhhhhhhhhhhhhhhhhhhccCCCCCCCCccCcccccccCcccc
Confidence 445677777777777777777655532 3555555 2222123345784 5688
No 50
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=35.12 E-value=53 Score=23.41 Aligned_cols=22 Identities=14% Similarity=0.371 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024136 83 KKKEKELQAKEAELRRREQDVR 104 (272)
Q Consensus 83 ~~ke~EL~~rE~EL~rRE~el~ 104 (272)
.+...++++.++|+++.|+|++
T Consensus 44 ~~~r~~~~~~~k~l~~le~e~~ 65 (68)
T PF06305_consen 44 LRLRRRIRRLRKELKKLEKELE 65 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555655555543
No 51
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=33.77 E-value=28 Score=32.95 Aligned_cols=20 Identities=45% Similarity=0.738 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024136 86 EKELQAKEAELRRREQDVRR 105 (272)
Q Consensus 86 e~EL~~rE~EL~rRE~el~~ 105 (272)
|||++.-|+||++||.++++
T Consensus 160 ~eE~eEVe~el~~~~~~~~~ 179 (294)
T KOG2881|consen 160 QEELEEVEAELAKREDELDR 179 (294)
T ss_pred hhhHHHHHHHHHhccchhhh
Confidence 55666666666666666554
No 52
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=33.26 E-value=1.2e+02 Score=34.84 Aligned_cols=105 Identities=21% Similarity=0.246 Sum_probs=51.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----------CCCh---hHHHHH-----HHHHHhhhhhhhhHhhHH
Q 024136 139 IHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIK----------GEGV---KIWFLA-----IIYFIAGVPGAYVLWYRP 200 (272)
Q Consensus 139 ~~~q~~v~~~y~~wl~~~~~L~~N~i~~~~~~i~----------g~~~---~~f~la-----ily~l~g~P~sf~~WYrp 200 (272)
...|.++..|+..+|..++.-..|.-.. ...+. ..+. ..+.+| +-|-++..-+.|+|||.|
T Consensus 1147 ~~~q~lqn~m~a~yma~v~~~~~~~~~~-~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~ 1225 (1391)
T KOG0065|consen 1147 HNVQGLQNAMGAAYMATVFSGPNNNQLQ-QPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYP 1225 (1391)
T ss_pred CcHHHHHHHHHHHHHHHHHhhhhhhhhh-hhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeee
Confidence 5678888888888885544333332211 12221 1111 122332 445666666778899988
Q ss_pred HHHHhhcccchhHHHHHHHHHHHHHH---HHhhhccCCccccCCcceehHHHH
Q 024136 201 LYRAFRTESAMKFGWFFLFYLLHIGF---CIFASVAPPIIFKGKSLTGVLPAV 250 (272)
Q Consensus 201 lY~A~r~dss~~f~~FF~~~~~~i~f---~v~~aIG~P~~~~g~g~~G~I~ai 250 (272)
+= | ..++-+++||++.+++..++ .-++.+.+ .++-+.+.++.++
T Consensus 1226 iG--F-~~~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~---tPn~~~Aav~~s~ 1272 (1391)
T KOG0065|consen 1226 IG--F-YWTASKFFWFLLFMFIFFLYFTTLGMMLVSL---TPNLQTAAVIASL 1272 (1391)
T ss_pred cc--c-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCChhHHHHHHHH
Confidence 41 1 11223344444444333333 33333332 3466766666553
No 53
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=33.01 E-value=85 Score=28.04 Aligned_cols=21 Identities=24% Similarity=0.514 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024136 82 LKKKEKELQAKEAELRRREQD 102 (272)
Q Consensus 82 l~~ke~EL~~rE~EL~rRE~e 102 (272)
-+|.|||++++.++.++++++
T Consensus 89 R~RmQEE~dakA~~~kEKq~q 109 (190)
T PF06936_consen 89 RRRMQEELDAKAEEYKEKQKQ 109 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 356677777776665543333
No 54
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=32.44 E-value=15 Score=35.27 Aligned_cols=51 Identities=20% Similarity=0.294 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhhhhhhhhHhhHHHHHHhhcccchh-HHHHHHHHHHHHHHHH
Q 024136 177 KIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMK-FGWFFLFYLLHIGFCI 228 (272)
Q Consensus 177 ~~f~laily~l~g~P~sf~~WYrplY~A~r~dss~~-f~~FF~~~~~~i~f~v 228 (272)
+..++.|+.+++++-++..+|++ +.---+-..|+- -..||+.|+..|++-|
T Consensus 103 Q~LF~Gi~~l~l~~lLaL~vW~Y-m~lLr~~GAs~WtiLaFcLAF~LaivlLI 154 (381)
T PF05297_consen 103 QTLFVGIVILFLCCLLALGVWFY-MWLLRELGASFWTILAFCLAFLLAIVLLI 154 (381)
T ss_dssp -----------------------------------------------------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 45788899999999999999988 552222333322 2234444544444443
No 55
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=31.55 E-value=54 Score=29.84 Aligned_cols=26 Identities=23% Similarity=0.334 Sum_probs=14.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Q 024136 78 TAADLKKKEKELQAKEAELRRREQDV 103 (272)
Q Consensus 78 ~~~el~~ke~EL~~rE~EL~rRE~el 103 (272)
+.+|-++..++|..||.||.|.-.+|
T Consensus 8 s~eew~~Ar~~LL~~EKeltR~~dal 33 (211)
T PF05988_consen 8 SREEWLAARDALLAREKELTRARDAL 33 (211)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666777776544444
No 56
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=31.34 E-value=2.4e+02 Score=21.54 Aligned_cols=23 Identities=22% Similarity=0.654 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024136 145 QYVAFATYLGLFLCLLWNIVAVT 167 (272)
Q Consensus 145 v~~~y~~wl~~~~~L~~N~i~~~ 167 (272)
.-++|.+=+++.+|+++|.+.+.
T Consensus 50 IGILYGlVIGlil~~i~~~l~~~ 72 (75)
T COG4064 50 IGILYGLVIGLILCMIYILLGVA 72 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999998763
No 57
>PF12737 Mating_C: C-terminal domain of homeodomain 1; InterPro: IPR024441 Mating in fungi is controlled by the loci that determine the mating type of an individual, and only individuals with differing mating types can mate. Basidiomycete fungi have evolved a unique mating system, termed tetrapolar or bifactorial incompatibility, in which mating type is determined by two unlinked loci; compatibility at both loci is required for mating to occur. The multi-allelic tetrapolar mating system is considered to be a novel innovation that could have only evolved once, and is thus unique to the mushroom fungi. This domain is found in the C-terminal of some mating-type proteins.
Probab=30.75 E-value=50 Score=32.95 Aligned_cols=25 Identities=32% Similarity=0.323 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024136 85 KEKELQAKEAELRRREQDVRRKEEA 109 (272)
Q Consensus 85 ke~EL~~rE~EL~rRE~el~~re~~ 109 (272)
.++|+++|.+||+..|++.++-+.+
T Consensus 393 ~~~~~~AK~reL~eLeAq~~aL~AE 417 (419)
T PF12737_consen 393 PEAEREAKRRELEELEAQARALRAE 417 (419)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4778889999999888887765544
No 58
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=30.57 E-value=63 Score=31.48 Aligned_cols=30 Identities=27% Similarity=0.451 Sum_probs=23.0
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024136 75 PLDTAADLKKKEKELQAKEAELRRREQDVR 104 (272)
Q Consensus 75 ~~~~~~el~~ke~EL~~rE~EL~rRE~el~ 104 (272)
+..+-+||++-++|+..||+||+.+.++|+
T Consensus 341 ~~yTeEEL~~fE~e~A~ke~El~~ka~~lq 370 (442)
T KOG3866|consen 341 KVYTEEELQQFEREYAQKEQELQHKAEALQ 370 (442)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhchHHHhh
Confidence 445677888888888888888877666664
No 59
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=30.27 E-value=92 Score=27.02 Aligned_cols=22 Identities=27% Similarity=0.558 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024136 83 KKKEKELQAKEAELRRREQDVR 104 (272)
Q Consensus 83 ~~ke~EL~~rE~EL~rRE~el~ 104 (272)
++.++|+++.++||++.|.++.
T Consensus 157 ~~~~~ei~~lk~el~~~~~~~~ 178 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEKKEKEIE 178 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHHH
Confidence 4445566666666666555544
No 60
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=30.09 E-value=10 Score=31.44 Aligned_cols=30 Identities=27% Similarity=0.462 Sum_probs=1.8
Q ss_pred HHHHHHHHHhhhhhhhhHhh---HHHHHHhhcc
Q 024136 179 WFLAIIYFIAGVPGAYVLWY---RPLYRAFRTE 208 (272)
Q Consensus 179 f~laily~l~g~P~sf~~WY---rplY~A~r~d 208 (272)
.|.+||-+|+++-+.+-||| |.=||.+|+.
T Consensus 27 aGIGiL~VILgiLLliGCWYckRRSGYk~L~~k 59 (118)
T PF14991_consen 27 AGIGILIVILGILLLIGCWYCKRRSGYKTLRDK 59 (118)
T ss_dssp -SSS-----------------------------
T ss_pred ccceeHHHHHHHHHHHhheeeeecchhhhhhhc
Confidence 45566777788888889999 6678888754
No 61
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=29.93 E-value=2.1e+02 Score=25.04 Aligned_cols=29 Identities=24% Similarity=0.270 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024136 79 AADLKKKEKELQAKEAELRRREQDVRRKE 107 (272)
Q Consensus 79 ~~el~~ke~EL~~rE~EL~rRE~el~~re 107 (272)
.+|-++..+||.+-|+|+....+-|..+|
T Consensus 28 EeE~eeLr~EL~KvEeEI~TLrqvL~aKe 56 (162)
T PF04201_consen 28 EEEREELRSELAKVEEEIQTLRQVLAAKE 56 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566677777777654333343333
No 62
>KOG3231 consensus Predicted assembly/vacuolar sorting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.49 E-value=1.2e+02 Score=27.00 Aligned_cols=25 Identities=12% Similarity=0.521 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024136 80 ADLKKKEKELQAKEAELRRREQDVR 104 (272)
Q Consensus 80 ~el~~ke~EL~~rE~EL~rRE~el~ 104 (272)
.||.+.++.++|-.+.++++|++|.
T Consensus 18 ReLRkt~RdierdRr~me~~Ek~LE 42 (208)
T KOG3231|consen 18 RELRKTQRDIERDRRAMEKQEKQLE 42 (208)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4777888888877777888777765
No 63
>PF06673 L_lactis_ph-MCP: Lactococcus lactis bacteriophage major capsid protein; InterPro: IPR009559 This family consists of several Lactococcus lactis bacteriophage major capsid proteins.
Probab=29.40 E-value=46 Score=30.63 Aligned_cols=14 Identities=50% Similarity=0.657 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHH
Q 024136 85 KEKELQAKEAELRR 98 (272)
Q Consensus 85 ke~EL~~rE~EL~r 98 (272)
|-+||++|-+||.+
T Consensus 19 kvreleakveelnk 32 (347)
T PF06673_consen 19 KVRELEAKVEELNK 32 (347)
T ss_pred chHHHHHHHHHHHH
Confidence 34466666666654
No 64
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=29.29 E-value=96 Score=24.74 Aligned_cols=24 Identities=29% Similarity=0.761 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024136 81 DLKKKEKELQAKEAELRRREQDVR 104 (272)
Q Consensus 81 el~~ke~EL~~rE~EL~rRE~el~ 104 (272)
+..++.+.+..++++|+.++++|+
T Consensus 22 e~~~~~~~~~~~e~~L~~~e~~l~ 45 (126)
T PF13863_consen 22 EIERREEQLKQREEELEKKEQELE 45 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555554
No 65
>PF10716 NdhL: NADH dehydrogenase transmembrane subunit; InterPro: IPR019654 NAD(P)H-quinone oxidoreductase subunit L (NdhL) is a component of the NDH-1L complex that is one of the proton-pumping NADH:ubiquinone oxidoreductases that catalyse the electron transfer from NADH to ubiquinone linked with proton translocation across the membrane. NDH-1L is essential for photoheterotrophic cell growth. NdhL appears to contain two transmembrane helices and it is necessary for the functioning of though not the correct assembly of the NDH-1 complex in Synechocystis 6803. The conservation between cyanobacteria and green plants suggests that chloroplast NDH-1 complexes contain related subunits []. ; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0055114 oxidation-reduction process
Probab=29.24 E-value=1.6e+02 Score=22.94 Aligned_cols=40 Identities=20% Similarity=0.143 Sum_probs=24.0
Q ss_pred HHHHHHHHHhhhhhhhhHhhHHHHHHhhcccchhHHHHHH
Q 024136 179 WFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFL 218 (272)
Q Consensus 179 f~laily~l~g~P~sf~~WYrplY~A~r~dss~~f~~FF~ 218 (272)
-+++.+|++..+++.|.-==.+.|++-+-+.-+.|+.-|+
T Consensus 22 ~~l~~~YLlVvP~~l~~wm~~RWy~~~~~Er~~~y~lvF~ 61 (81)
T PF10716_consen 22 AALAGLYLLVVPLILYFWMNKRWYVMSSFERLFMYFLVFL 61 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788899766655555443456777776664444443333
No 66
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=29.22 E-value=72 Score=24.54 Aligned_cols=15 Identities=40% Similarity=0.583 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHH
Q 024136 84 KKEKELQAKEAELRR 98 (272)
Q Consensus 84 ~ke~EL~~rE~EL~r 98 (272)
+-.+||++.|+||++
T Consensus 11 ~Lk~eiqkle~ELq~ 25 (76)
T PF07334_consen 11 RLKEEIQKLEAELQQ 25 (76)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334455555555554
No 67
>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=28.75 E-value=59 Score=32.04 Aligned_cols=12 Identities=42% Similarity=0.686 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHH
Q 024136 85 KEKELQAKEAEL 96 (272)
Q Consensus 85 ke~EL~~rE~EL 96 (272)
+++|+.||++||
T Consensus 268 ~eqEiqr~~~el 279 (428)
T KOG2668|consen 268 REQEIQRRVEEL 279 (428)
T ss_pred HHHHHHHHHHHH
Confidence 344444444444
No 68
>PF05082 Rop-like: Rop-like; InterPro: IPR007774 This family contains several uncharacterised bacterial proteins. These proteins are found in nitrogen fixation operons, so are likely to play a role in this process.; PDB: 3CSX_A 2JS5_B.
Probab=28.64 E-value=55 Score=24.52 Aligned_cols=18 Identities=28% Similarity=0.617 Sum_probs=10.3
Q ss_pred cccccccchhhHHHHHHH
Q 024136 130 HHDIANEIPIHLQRLQYV 147 (272)
Q Consensus 130 y~DI~~eIP~~~q~~v~~ 147 (272)
.||+++|+|...+++.-+
T Consensus 25 LHDLaEdLP~~w~~i~~v 42 (66)
T PF05082_consen 25 LHDLAEDLPTNWEEIPEV 42 (66)
T ss_dssp HHHHHHCTTTTGGGHHHH
T ss_pred HHHHHHccchhHHHHHHH
Confidence 366666666666554433
No 69
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=28.64 E-value=1.1e+02 Score=27.96 Aligned_cols=28 Identities=21% Similarity=0.270 Sum_probs=20.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024136 77 DTAADLKKKEKELQAKEAELRRREQDVR 104 (272)
Q Consensus 77 ~~~~el~~ke~EL~~rE~EL~rRE~el~ 104 (272)
.+-++|.++||||.|...+|.++.|+|.
T Consensus 14 ~Ar~~LL~~EKeltR~~dalaa~RR~LP 41 (211)
T PF05988_consen 14 AARDALLAREKELTRARDALAAERRRLP 41 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 3456899999999988888876555553
No 70
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=28.62 E-value=1.4e+02 Score=22.80 Aligned_cols=25 Identities=28% Similarity=0.275 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024136 80 ADLKKKEKELQAKEAELRRREQDVR 104 (272)
Q Consensus 80 ~el~~ke~EL~~rE~EL~rRE~el~ 104 (272)
++..++-+||.++.+.|++|=+-|.
T Consensus 38 ~~d~~~L~~L~~~a~rm~eRI~tLE 62 (75)
T TIGR02976 38 TDDQALLQELYAKADRLEERIDTLE 62 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777767666666555444
No 71
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=28.04 E-value=1.6e+02 Score=19.05 Aligned_cols=11 Identities=45% Similarity=0.890 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 024136 96 LRRREQDVRRK 106 (272)
Q Consensus 96 L~rRE~el~~r 106 (272)
|+||.++|+.+
T Consensus 13 Lrrr~eqLK~k 23 (32)
T PF02344_consen 13 LRRRREQLKHK 23 (32)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 72
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=27.79 E-value=86 Score=31.85 Aligned_cols=29 Identities=17% Similarity=0.454 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024136 79 AADLKKKEKELQAKEAELRRREQDVRRKE 107 (272)
Q Consensus 79 ~~el~~ke~EL~~rE~EL~rRE~el~~re 107 (272)
.++++++.++|.+..+.|+++.++|++||
T Consensus 68 ~k~~r~~~~~l~~~N~~l~~eN~~L~~r~ 96 (472)
T TIGR03752 68 VKELRKRLAKLISENEALKAENERLQKRE 96 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555555555554445544444455544
No 73
>KOG3879 consensus Predicted membrane protein [Function unknown]
Probab=27.72 E-value=78 Score=29.47 Aligned_cols=25 Identities=20% Similarity=0.433 Sum_probs=19.4
Q ss_pred HhhcccchhHHHHHHHHHHHHHHHH
Q 024136 204 AFRTESAMKFGWFFLFYLLHIGFCI 228 (272)
Q Consensus 204 A~r~dss~~f~~FF~~~~~~i~f~v 228 (272)
++|.|.|++.-.+..+-.+|+++-.
T Consensus 50 ~~Rhd~a~ele~~~avnilqlIfla 74 (267)
T KOG3879|consen 50 GFRHDLAFELEFTWAVNILQLIFLA 74 (267)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHH
Confidence 7889999998888777777766554
No 74
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=27.72 E-value=1.2e+02 Score=28.55 Aligned_cols=20 Identities=40% Similarity=0.747 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024136 85 KEKELQAKEAELRRREQDVR 104 (272)
Q Consensus 85 ke~EL~~rE~EL~rRE~el~ 104 (272)
+++||+..++||+++|++++
T Consensus 205 ~~~ELe~~~EeL~~~Eke~~ 224 (269)
T PF05278_consen 205 KKEELEELEEELKQKEKEVK 224 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555554
No 75
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=27.55 E-value=1.1e+02 Score=21.37 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024136 82 LKKKEKELQAKEAELRRREQDV 103 (272)
Q Consensus 82 l~~ke~EL~~rE~EL~rRE~el 103 (272)
++++-++++++-++|++.+++|
T Consensus 41 l~~~~~~i~~~i~~L~~~~~~L 62 (65)
T PF09278_consen 41 LEEKLEEIEEQIAELQALRAQL 62 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666665555444
No 76
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=27.14 E-value=9.6e+02 Score=27.21 Aligned_cols=16 Identities=25% Similarity=0.302 Sum_probs=10.1
Q ss_pred cccccchhhHHHHHHHH
Q 024136 132 DIANEIPIHLQRLQYVA 148 (272)
Q Consensus 132 DI~~eIP~~~q~~v~~~ 148 (272)
|+ +.|-....++++.+
T Consensus 772 dl-~~Is~QslrL~r~~ 787 (1109)
T PRK10929 772 DL-DAISAQSLRLVRSI 787 (1109)
T ss_pred CH-HHHHHHHHHHHHHH
Confidence 44 35666677777774
No 77
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=27.04 E-value=1.2e+02 Score=30.46 Aligned_cols=9 Identities=22% Similarity=0.652 Sum_probs=3.9
Q ss_pred HHHHHHHHH
Q 024136 99 REQDVRRKE 107 (272)
Q Consensus 99 RE~el~~re 107 (272)
|++||.+|+
T Consensus 215 r~~ela~r~ 223 (499)
T COG4372 215 RTEELARRA 223 (499)
T ss_pred HHHHHHHHH
Confidence 444444443
No 78
>KOG3248 consensus Transcription factor TCF-4 [Transcription]
Probab=26.33 E-value=72 Score=31.28 Aligned_cols=8 Identities=25% Similarity=0.397 Sum_probs=4.6
Q ss_pred CcCCCCCC
Q 024136 118 EEKNWPPF 125 (272)
Q Consensus 118 ~~~NwPpf 125 (272)
+..+|+-+
T Consensus 288 es~~~~~~ 295 (421)
T KOG3248|consen 288 ESEMWCGS 295 (421)
T ss_pred cccccccc
Confidence 34567753
No 79
>TIGR00986 3a0801s05tom22 mitochondrial import receptor subunit Tom22. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom22 proteins.
Probab=26.29 E-value=2.2e+02 Score=24.52 Aligned_cols=20 Identities=25% Similarity=0.463 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHhhhhhhhhH
Q 024136 177 KIWFLAIIYFIAGVPGAYVL 196 (272)
Q Consensus 177 ~~f~laily~l~g~P~sf~~ 196 (272)
..|+++.-.+|+|+|+++-+
T Consensus 91 alWivsTSaLLLgVPlala~ 110 (145)
T TIGR00986 91 AAWAVSTSALLLGVPFAISF 110 (145)
T ss_pred chhhhHHHHHHHHHHHHHHH
Confidence 46999999999999998764
No 80
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=26.23 E-value=1.3e+02 Score=27.78 Aligned_cols=21 Identities=24% Similarity=0.526 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024136 84 KKEKELQAKEAELRRREQDVR 104 (272)
Q Consensus 84 ~ke~EL~~rE~EL~rRE~el~ 104 (272)
|++++++..|++.++|.++++
T Consensus 71 k~e~~m~~Lea~VEkrD~~IQ 91 (272)
T KOG4552|consen 71 KREQLMRTLEAHVEKRDEVIQ 91 (272)
T ss_pred HHHHHHHHHHHHHHHhHHHHH
Confidence 344444444444444444443
No 81
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=26.09 E-value=1.2e+02 Score=25.27 Aligned_cols=23 Identities=39% Similarity=0.557 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024136 83 KKKEKELQAKEAELRRREQDVRR 105 (272)
Q Consensus 83 ~~ke~EL~~rE~EL~rRE~el~~ 105 (272)
.+|+++++.+.++|+++..+|+.
T Consensus 104 ~~Ke~~~~~~l~~L~~~i~~L~~ 126 (134)
T PF07047_consen 104 AKKEEELQERLEELEERIEELEE 126 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555544
No 82
>PF04193 PQ-loop: PQ loop repeat
Probab=26.03 E-value=2.1e+02 Score=19.72 Aligned_cols=39 Identities=8% Similarity=0.259 Sum_probs=22.3
Q ss_pred hhhhhhhHhhHHHHHHhhcccc--hhHHHHHHHHHHHHHHH
Q 024136 189 GVPGAYVLWYRPLYRAFRTESA--MKFGWFFLFYLLHIGFC 227 (272)
Q Consensus 189 g~P~sf~~WYrplY~A~r~dss--~~f~~FF~~~~~~i~f~ 227 (272)
++.+..+.+.-.+|+.+|+.|+ +....+++....-++..
T Consensus 9 ~~~~~~~~~lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~ 49 (61)
T PF04193_consen 9 SIVLWIISFLPQIIKNYKRKSTGGLSLWFLLLWLIGSILWV 49 (61)
T ss_pred HHHHHHHHHHhHHHHHHHccccccccHHHHHHHHHHHHHHH
Confidence 3344555666688899888764 55544444443333333
No 83
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=26.01 E-value=61 Score=33.05 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024136 81 DLKKKEKELQAKEAELRRREQDVR 104 (272)
Q Consensus 81 el~~ke~EL~~rE~EL~rRE~el~ 104 (272)
+++||-|||+++-+||++...+++
T Consensus 28 ~~~qkie~L~kql~~Lk~q~~~l~ 51 (489)
T PF11853_consen 28 DLLQKIEALKKQLEELKAQQDDLN 51 (489)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccc
Confidence 344455555555555554433443
No 84
>PF11214 Med2: Mediator complex subunit 2; InterPro: IPR021017 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family of mediator complex subunit 2 proteins is conserved in fungi. Cyclin-dependent kinase CDK8 or Srb10 interacts with and phosphorylates Med2. Post-translational modifications of Mediator subunits are important for regulation of gene expression [, ].
Probab=25.84 E-value=75 Score=25.92 Aligned_cols=11 Identities=36% Similarity=0.604 Sum_probs=5.1
Q ss_pred HHHHHHHHHHH
Q 024136 80 ADLKKKEKELQ 90 (272)
Q Consensus 80 ~el~~ke~EL~ 90 (272)
-+++++.+|.+
T Consensus 79 ~e~~q~~ee~K 89 (105)
T PF11214_consen 79 VELKQKQEEEK 89 (105)
T ss_pred HHHHHHHHHHH
Confidence 34555544433
No 85
>PRK12377 putative replication protein; Provisional
Probab=25.70 E-value=2e+02 Score=26.43 Aligned_cols=40 Identities=20% Similarity=0.265 Sum_probs=16.5
Q ss_pred cchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCC
Q 024136 77 DTAADLKKKEKELQA-KEAELRRREQDVRRKEEAAARAGIVL 117 (272)
Q Consensus 77 ~~~~el~~ke~EL~~-rE~EL~rRE~el~~re~~~~~~g~~~ 117 (272)
.+.+|+...+++-.+ +.+|.++++ +-++.++-..++|.+.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~i~~ 66 (248)
T PRK12377 26 RTVDEWREWQLAEGRKRSEEINRQN-QQLRVEKILNRSGIQP 66 (248)
T ss_pred CCHHHHHHHHHHHhhhhhHHHHHHH-HHHHHHHHHHHcCCCc
Confidence 345555544444332 233333222 2223344455666543
No 86
>PHA02148 hypothetical protein
Probab=25.56 E-value=2.2e+02 Score=22.95 Aligned_cols=14 Identities=43% Similarity=0.743 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHH
Q 024136 97 RRREQDVRRKEEAA 110 (272)
Q Consensus 97 ~rRE~el~~re~~~ 110 (272)
.+||.||++.|.++
T Consensus 58 ~~R~NEL~~HE~Ai 71 (110)
T PHA02148 58 KSRENELRRHEAAI 71 (110)
T ss_pred HHHHHHHHHHHHHH
Confidence 34666666555443
No 87
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=25.51 E-value=1.7e+02 Score=23.45 Aligned_cols=9 Identities=33% Similarity=0.508 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 024136 89 LQAKEAELR 97 (272)
Q Consensus 89 L~~rE~EL~ 97 (272)
|+++.++|+
T Consensus 46 l~~~n~~L~ 54 (105)
T PRK00888 46 LKARNDQLF 54 (105)
T ss_pred HHHHHHHHH
Confidence 333333333
No 88
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=25.09 E-value=3.1e+02 Score=20.82 Aligned_cols=57 Identities=18% Similarity=0.317 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCCCCCCCccccccccccchhhHHHHHHHHHHHHHHHHHHH
Q 024136 80 ADLKKKEKELQAKEAELRRREQDVRRKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCL 159 (272)
Q Consensus 80 ~el~~ke~EL~~rE~EL~rRE~el~~re~~~~~~g~~~~~~NwPpf~P~~y~DI~~eIP~~~q~~v~~~y~~wl~~~~~L 159 (272)
+|.++-.+.|+.-|+.++.-..|+.+|. | +..=|-+-++|..-+++.+++
T Consensus 12 ~d~~~i~~rLd~iEeKVEf~~~E~~Qr~------G------------------------kk~GRDiGIlYG~viGlli~~ 61 (70)
T TIGR01149 12 DEFNEVMKRLDEIEEKVEFVNGEVAQRI------G------------------------KKVGRDIGILYGLVIGLILFL 61 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------h------------------------HHhhhHHHHHHHHHHHHHHHH
Confidence 4555555566666666666666665543 2 122244678888888877776
Q ss_pred HHHHHHH
Q 024136 160 LWNIVAV 166 (272)
Q Consensus 160 ~~N~i~~ 166 (272)
+++.+..
T Consensus 62 ~~~~l~~ 68 (70)
T TIGR01149 62 IYILLSS 68 (70)
T ss_pred HHHHHHh
Confidence 6666543
No 89
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=24.68 E-value=1.3e+02 Score=27.55 Aligned_cols=23 Identities=39% Similarity=0.608 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024136 80 ADLKKKEKELQAKEAELRRREQD 102 (272)
Q Consensus 80 ~el~~ke~EL~~rE~EL~rRE~e 102 (272)
+|+.+.++||++++.+|++.+.+
T Consensus 158 ~~~~kL~~el~~~~~~Le~~~~~ 180 (216)
T KOG1962|consen 158 ADLEKLETELEKKQKKLEKAQKK 180 (216)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666554443
No 90
>PRK10794 cell wall shape-determining protein; Provisional
Probab=24.59 E-value=6.5e+02 Score=24.37 Aligned_cols=58 Identities=14% Similarity=0.069 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCh-hHHHHHHHHHHhhhhhhhhHhhHHHHHHhhc
Q 024136 149 FATYLGLFLCLLWNIVAVTTAWIKGEGV-KIWFLAIIYFIAGVPGAYVLWYRPLYRAFRT 207 (272)
Q Consensus 149 y~~wl~~~~~L~~N~i~~~~~~i~g~~~-~~f~laily~l~g~P~sf~~WYrplY~A~r~ 207 (272)
..-|.....++++-.++.+......... ..+.==++|+++|..+.+++.+-+ |+-.++
T Consensus 15 ~~d~~ll~~~~~L~~~Gl~~i~sa~~~~~~~~~~Ql~~~~iG~~~~~~~~~~~-~~~l~k 73 (370)
T PRK10794 15 HIDPTMLLIILALLVYSALVIWSASGQDIGMMERKIGQIAMGLVVMVVMAQIP-PRVYEG 73 (370)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHcC-HHHHHH
Confidence 4556555566666666654444332211 223344778888888888887665 555543
No 91
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=24.50 E-value=83 Score=30.69 Aligned_cols=22 Identities=41% Similarity=0.575 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024136 86 EKELQAKEAELRRREQDVRRKE 107 (272)
Q Consensus 86 e~EL~~rE~EL~rRE~el~~re 107 (272)
++||++-|+|+..||+|++...
T Consensus 345 eEEL~~fE~e~A~ke~El~~ka 366 (442)
T KOG3866|consen 345 EEELQQFEREYAQKEQELQHKA 366 (442)
T ss_pred HHHHHHHHHHHHHHHHHHhchH
Confidence 4566666666666666655443
No 92
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=24.40 E-value=1.8e+02 Score=32.59 Aligned_cols=32 Identities=34% Similarity=0.475 Sum_probs=18.2
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024136 76 LDTAADLKKKEKELQAKEAELRRREQDVRRKE 107 (272)
Q Consensus 76 ~~~~~el~~ke~EL~~rE~EL~rRE~el~~re 107 (272)
+..-.++...+.||+..+.||+..|++|+..+
T Consensus 673 L~~l~~l~~~~~~~~~~q~el~~le~eL~~le 704 (1174)
T KOG0933|consen 673 LRQLQKLKQAQKELRAIQKELEALERELKSLE 704 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556666666666666666666665433
No 93
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=23.91 E-value=1.8e+02 Score=26.25 Aligned_cols=29 Identities=31% Similarity=0.274 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024136 83 KKKEKELQAKEAELRRREQDVRRKEEAAA 111 (272)
Q Consensus 83 ~~ke~EL~~rE~EL~rRE~el~~re~~~~ 111 (272)
+.-..||.+-|+|+.-..+=|..||++++
T Consensus 47 eelr~EL~kvEeEI~TLrqVLaAKerH~~ 75 (208)
T KOG4010|consen 47 EELRTELAKVEEEIVTLRQVLAAKERHAA 75 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344566666666544444444554433
No 94
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=23.60 E-value=2e+02 Score=27.04 Aligned_cols=31 Identities=19% Similarity=0.292 Sum_probs=14.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024136 77 DTAADLKKKEKELQAKEAELRRREQDVRRKE 107 (272)
Q Consensus 77 ~~~~el~~ke~EL~~rE~EL~rRE~el~~re 107 (272)
.+|++...|+..|++|+.|.+.-|+|-.+||
T Consensus 158 ~~q~~~l~kr~K~kkR~~~~q~~eeEr~~kE 188 (314)
T COG5220 158 GKQKNVLQKRMKLKKRQLERQIEEEERMNKE 188 (314)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555555443333333333
No 95
>PF06673 L_lactis_ph-MCP: Lactococcus lactis bacteriophage major capsid protein; InterPro: IPR009559 This family consists of several Lactococcus lactis bacteriophage major capsid proteins.
Probab=23.58 E-value=99 Score=28.48 Aligned_cols=19 Identities=32% Similarity=0.515 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 024136 79 AADLKKKEKELQAKEAELR 97 (272)
Q Consensus 79 ~~el~~ke~EL~~rE~EL~ 97 (272)
..||+.|-+||.+..+||+
T Consensus 20 vreleakveelnkereelk 38 (347)
T PF06673_consen 20 VRELEAKVEELNKEREELK 38 (347)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3578888888887777775
No 96
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=23.49 E-value=2.1e+02 Score=21.03 Aligned_cols=8 Identities=13% Similarity=0.335 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 024136 91 AKEAELRR 98 (272)
Q Consensus 91 ~rE~EL~r 98 (272)
++...|++
T Consensus 20 ~~i~~lE~ 27 (71)
T PF10779_consen 20 ERIDKLEK 27 (71)
T ss_pred HHHHHHHH
Confidence 33333333
No 97
>PRK10263 DNA translocase FtsK; Provisional
Probab=23.43 E-value=77 Score=36.19 Aligned_cols=11 Identities=18% Similarity=0.271 Sum_probs=6.6
Q ss_pred cCCcceehHHH
Q 024136 239 KGKSLTGVLPA 249 (272)
Q Consensus 239 ~g~g~~G~I~a 249 (272)
.+.|..|.+.+
T Consensus 141 ~gGGIIG~lLs 151 (1355)
T PRK10263 141 ASGGVIGSLLS 151 (1355)
T ss_pred cccchHHHHHH
Confidence 35677776644
No 98
>TIGR02051 MerR Hg(II)-responsive transcriptional regulator. This model represents the mercury (II) responsive transcriptional activator of the mer organomercurial resistance operon. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(8)-Cys-Pro, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=23.32 E-value=2.1e+02 Score=23.13 Aligned_cols=25 Identities=36% Similarity=0.300 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024136 81 DLKKKEKELQAKEAELRRREQDVRR 105 (272)
Q Consensus 81 el~~ke~EL~~rE~EL~rRE~el~~ 105 (272)
-++++.++|+++.++|++.++.|+.
T Consensus 80 ~l~~~~~~l~~~i~~L~~~~~~L~~ 104 (124)
T TIGR02051 80 LASRKLKSVQAKMADLLRIERLLEE 104 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566667777777777766666654
No 99
>KOG1691 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.27 E-value=3.3e+02 Score=24.83 Aligned_cols=19 Identities=26% Similarity=0.121 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024136 146 YVAFATYLGLFLCLLWNIV 164 (272)
Q Consensus 146 ~~~y~~wl~~~~~L~~N~i 164 (272)
++++++.|.+++|+.++..
T Consensus 177 rv~~fSi~Sl~v~~~va~~ 195 (210)
T KOG1691|consen 177 RVAWFSILSLVVLLSVAGW 195 (210)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6777777777666655443
No 100
>COG1422 Predicted membrane protein [Function unknown]
Probab=23.16 E-value=4.7e+02 Score=23.71 Aligned_cols=19 Identities=32% Similarity=0.328 Sum_probs=9.6
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 024136 79 AADLKKKEKELQAKEAELR 97 (272)
Q Consensus 79 ~~el~~ke~EL~~rE~EL~ 97 (272)
.++++++.+|++++-+|.+
T Consensus 74 m~~~qk~m~efq~e~~eA~ 92 (201)
T COG1422 74 MKELQKMMKEFQKEFREAQ 92 (201)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455555555554444443
No 101
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=23.16 E-value=1.5e+02 Score=29.80 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024136 82 LKKKEKELQAKEAELRRREQDVRR 105 (272)
Q Consensus 82 l~~ke~EL~~rE~EL~rRE~el~~ 105 (272)
|..+++..+.|++||.+|++.++.
T Consensus 205 la~r~~a~q~r~~ela~r~aa~Qq 228 (499)
T COG4372 205 LATRANAAQARTEELARRAAAAQQ 228 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555554443
No 102
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=23.10 E-value=2.3e+02 Score=31.04 Aligned_cols=18 Identities=22% Similarity=0.318 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 024136 81 DLKKKEKELQAKEAELRR 98 (272)
Q Consensus 81 el~~ke~EL~~rE~EL~r 98 (272)
|..|-+|+|.|||.|+++
T Consensus 1106 et~rlre~L~rke~E~Qa 1123 (1226)
T KOG4279|consen 1106 ETERLREILDRKEREYQA 1123 (1226)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 455666677777777655
No 103
>PF00146 NADHdh: NADH dehydrogenase; InterPro: IPR001694 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents subunit 1 NADH:ubiquinone oxidoreductase [, ]. Among the many polypeptide subunits that make up complex I, there are fifteen which are located in the membrane part, seven of which are encoded by the mitochondrial and chloroplast genomes of most species. The most conserved of these organelle-encoded subunits is known as subunit 1 (gene ND1 in mitochondrion, and NDH1 in chloroplast) and seems to contain the ubiquinone binding site. The ND1 subunit is highly similar to subunit 4 of Escherichia coli formate hydrogenlyase (gene hycD), subunit C of hydrogenase-4 (gene hyfC). Paracoccus denitrificans NQO8 and Escherichia coli nuoH NADH-ubiquinone oxidoreductase subunits also belong to this family []. This entry also includes the archaeal F420H2 oxidoreductase subunit H (FPO). FPO shuttles electrons from F420H2, via FAD and iron-sulphur (Fe-S) centres, to quinones in the F420H2:heterodisulphide oxidoreduction chain. The immediate electron acceptor for the enzyme in this species is believed to be methanophenazine. Couples the redox reaction to proton translocation (for every two electrons transferred, 0.9 hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. ; GO: 0055114 oxidation-reduction process, 0016020 membrane
Probab=22.88 E-value=3.7e+02 Score=25.29 Aligned_cols=31 Identities=26% Similarity=0.578 Sum_probs=25.9
Q ss_pred hhhhhhhHhhHHHHHHhhcccchhHHHHHHH
Q 024136 189 GVPGAYVLWYRPLYRAFRTESAMKFGWFFLF 219 (272)
Q Consensus 189 g~P~sf~~WYrplY~A~r~dss~~f~~FF~~ 219 (272)
..-...+.|-|-.+--+|-|+..++.|-.+.
T Consensus 266 ~~~~~~~~~ir~~~pR~R~d~~~~~~W~~~l 296 (311)
T PF00146_consen 266 LIVMFIFVWIRASFPRFRYDQLMRFCWKILL 296 (311)
T ss_pred HHHHHHHHHHHhhhccccchhhHHhHHHHHH
Confidence 4445667899999999999999999998763
No 104
>COG3671 Predicted membrane protein [Function unknown]
Probab=22.78 E-value=2.9e+02 Score=23.21 Aligned_cols=32 Identities=22% Similarity=0.232 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024136 140 HLQRLQYVAFATYLGLFLCLLWNIVAVTTAWI 171 (272)
Q Consensus 140 ~~q~~v~~~y~~wl~~~~~L~~N~i~~~~~~i 171 (272)
+-+++.-..|.++++-.++.+.=+++++++..
T Consensus 19 ~~k~l~~vvY~Ly~~G~v~git~lvgvi~AYv 50 (125)
T COG3671 19 SGKKLPIVVYILYLLGAVTGITPLVGVIFAYV 50 (125)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55677888999999888888888888888776
No 105
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=22.77 E-value=5.2e+02 Score=22.63 Aligned_cols=12 Identities=0% Similarity=0.210 Sum_probs=4.8
Q ss_pred HHHHHHHHHhhc
Q 024136 161 WNIVAVTTAWIK 172 (272)
Q Consensus 161 ~N~i~~~~~~i~ 172 (272)
..++..+..++.
T Consensus 93 f~~~~gi~~~f~ 104 (206)
T PF06570_consen 93 FSLLFGIMGFFS 104 (206)
T ss_pred HHHHHHHHHHHh
Confidence 333433444443
No 106
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.68 E-value=1.6e+02 Score=28.90 Aligned_cols=11 Identities=27% Similarity=0.652 Sum_probs=5.2
Q ss_pred HHHHHHHHHHH
Q 024136 94 AELRRREQDVR 104 (272)
Q Consensus 94 ~EL~rRE~el~ 104 (272)
++|+|||+||+
T Consensus 235 ~slkRt~EeL~ 245 (365)
T KOG2391|consen 235 ESLKRTEEELN 245 (365)
T ss_pred HHHHhhHHHHH
Confidence 33445555543
No 107
>KOG2174 consensus Leptin receptor gene-related protein [Signal transduction mechanisms]
Probab=22.67 E-value=1.6e+02 Score=24.89 Aligned_cols=92 Identities=20% Similarity=0.198 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHhhcCCChhHHHHHHHHHHhhhhhhhhHhhHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhhccCCc
Q 024136 157 LCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPI 236 (272)
Q Consensus 157 ~~L~~N~i~~~~~~i~g~~~~~f~laily~l~g~P~sf~~WYrplY~A~r~dss~~f~~FF~~~~~~i~f~v~~aIG~P~ 236 (272)
+.+.+-+++|-+ + . .---.+..+.|.+.=+|+-++.=+|--+.--+++++..=.-.|+. .-.+..++++|+
T Consensus 16 ~G~~l~iL~CAL-~-~--nwwPlf~~~~yvl~PiP~l~f~a~~~~~d~~~~~~~~idlA~FlT-----g~~vvs~falPi 86 (131)
T KOG2174|consen 16 VGLLLLILGCAL-F-R--NWWPLFVILFYVLSPIPNLLFIAGRTQHDFDATSDACIDLAKFLT-----GAIVVSAFALPI 86 (131)
T ss_pred HHHHHHHHHhhh-c-c--chHHHHHHHHHHhcCCchHHhccccceecccccccHHHHHHHHHh-----cchhhhhhhhHH
Confidence 445666777622 1 1 112246778888888888888766665555444444322222221 245677889999
Q ss_pred cccCCcceehHHHHHhhcCCc
Q 024136 237 IFKGKSLTGVLPAVDVMGDHA 257 (272)
Q Consensus 237 ~~~g~g~~G~I~ai~~~~~~~ 257 (272)
++..-|+.||-...-.+..|.
T Consensus 87 Vl~ha~lI~~gAc~l~~tg~~ 107 (131)
T KOG2174|consen 87 VLAHAGLIGWGACALVLTGNS 107 (131)
T ss_pred HHHHhhHhhhhhhhhhhcCCc
Confidence 988777777766655555543
No 108
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=22.61 E-value=1.5e+02 Score=25.62 Aligned_cols=19 Identities=37% Similarity=0.592 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024136 80 ADLKKKEKELQAKEAELRR 98 (272)
Q Consensus 80 ~el~~ke~EL~~rE~EL~r 98 (272)
+|+++..+||+++|+|++.
T Consensus 161 ~ei~~lk~el~~~~~~~~~ 179 (192)
T PF05529_consen 161 EEIEKLKKELEKKEKEIEA 179 (192)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555544
No 109
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=22.55 E-value=1.8e+02 Score=30.69 Aligned_cols=26 Identities=27% Similarity=0.293 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024136 80 ADLKKKEKELQAKEAELRRREQDVRR 105 (272)
Q Consensus 80 ~el~~ke~EL~~rE~EL~rRE~el~~ 105 (272)
.+..++|+|..+.+.||+|.-+++.+
T Consensus 544 ~~~~~~eke~~~L~~~lE~Ls~~~~e 569 (671)
T PF15390_consen 544 RNNLQKEKETSQLSKELERLSRNFTE 569 (671)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHH
Confidence 34456777777777777775555543
No 110
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=22.21 E-value=1.5e+02 Score=31.07 Aligned_cols=26 Identities=15% Similarity=0.413 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024136 80 ADLKKKEKELQAKEAELRRREQDVRR 105 (272)
Q Consensus 80 ~el~~ke~EL~~rE~EL~rRE~el~~ 105 (272)
++++++.+||..|+.+|+...+++..
T Consensus 31 ~~v~~kd~elr~rqt~~~~l~~~~~~ 56 (732)
T KOG0614|consen 31 EAVQRKDAELRQRQTILEELIKEISK 56 (732)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777766655555543
No 111
>PF10550 Toxin_36: Conantokin-G mollusc-toxin; InterPro: IPR005918 The conantokins are a family of neuroactive peptides found in the venoms of fish-hunting cone snails. They possess a relatively high number of residues (4-5) of the non-standard amino acid gamma-carboxyglutamic acid (Gla), which is generated by the post-translational modification of glutamate (Glu) residues. Conantokins are the only naturally produced peptides known to be N-methyl-D-aspartate (NMDA) receptor antagonists and show therapeutic promise in treating conditions associated with NMDA receptor dysfunction. In animal models they have exhibited anticonvulsant and anti-Parkinsonian properties and have provided neuroprotection within therapeutically acceptable times following transient focal brain ischemia [, , , ]. Upon binding of Ca2+ to Gla, conantokin undergoes a conformational transition from a distorted curvilinear 3(10) helix to a linear alpha-helix. The binding of Ca2+ to conantokin leads to the exposure of a hydrophobic region on the opposite face of the helix []. Conantokins share relatively few sequence elements, which include include sequence identity at the first four residues, homologous positioning of the two most C-terminal Gla residues, and an Arg preceding the most C-terminal Gla []. The conantokin family is currently known to include: Conotoxin G from Conus geographus (Geography cone) (Nubecula geographus). Conantokin-L from Conus lynceus (Lynceus cone). Conantokin-R from Conus radiatus (Rayed cone). Conantokin-T from Conus tulipa (Fish-hunting cone snail) (Tulip cone). ; PDB: 1ONT_A.
Probab=22.20 E-value=1e+02 Score=16.46 Aligned_cols=11 Identities=36% Similarity=0.425 Sum_probs=5.0
Q ss_pred HHHHHHHHHHH
Q 024136 87 KELQAKEAELR 97 (272)
Q Consensus 87 ~EL~~rE~EL~ 97 (272)
+|..+..+||.
T Consensus 3 ee~~km~~~la 13 (15)
T PF10550_consen 3 EEVAKMAAELA 13 (15)
T ss_dssp HHHHHHHHHH-
T ss_pred HHHHHHHHHHh
Confidence 44445555554
No 112
>CHL00032 ndhA NADH dehydrogenase subunit 1
Probab=22.16 E-value=7.4e+02 Score=24.16 Aligned_cols=28 Identities=21% Similarity=0.356 Sum_probs=24.0
Q ss_pred hhhhHhhHHHHHHhhcccchhHHHHHHH
Q 024136 192 GAYVLWYRPLYRAFRTESAMKFGWFFLF 219 (272)
Q Consensus 192 ~sf~~WYrplY~A~r~dss~~f~~FF~~ 219 (272)
..++.|-|-.+--+|-|+..++.|..+.
T Consensus 318 ~~~~i~ir~~~pR~R~Dq~~~~~Wk~ll 345 (363)
T CHL00032 318 LFISITTRWTLPRLRMDQLLNLGWKFLL 345 (363)
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHH
Confidence 3456899999999999999999999754
No 113
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=21.99 E-value=1.5e+02 Score=22.67 Aligned_cols=15 Identities=20% Similarity=0.423 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHH
Q 024136 85 KEKELQAKEAELRRR 99 (272)
Q Consensus 85 ke~EL~~rE~EL~rR 99 (272)
-+++|+++|.|-+++
T Consensus 44 LaK~ie~~ere~K~k 58 (74)
T PF15086_consen 44 LAKAIEKEEREKKKK 58 (74)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555555554443
No 114
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=21.84 E-value=1.7e+02 Score=28.38 Aligned_cols=9 Identities=67% Similarity=0.848 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 024136 88 ELQAKEAEL 96 (272)
Q Consensus 88 EL~~rE~EL 96 (272)
||+|||+|+
T Consensus 334 e~qrkEee~ 342 (406)
T KOG3859|consen 334 ELQRKEEEM 342 (406)
T ss_pred HHHHhHHHH
Confidence 344444444
No 115
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=21.67 E-value=3.5e+02 Score=20.25 Aligned_cols=7 Identities=14% Similarity=0.619 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 024136 146 YVAFATY 152 (272)
Q Consensus 146 ~~~y~~w 152 (272)
+.-|..|
T Consensus 63 ~~~~k~~ 69 (89)
T PF00957_consen 63 WRNYKLY 69 (89)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 116
>PLN03140 ABC transporter G family member; Provisional
Probab=21.41 E-value=4.6e+02 Score=30.42 Aligned_cols=37 Identities=27% Similarity=0.512 Sum_probs=20.0
Q ss_pred HHHHHhhhhhhhhHhhHHHHHHhhcccchhHHHHHHHHHH
Q 024136 183 IIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLL 222 (272)
Q Consensus 183 ily~l~g~P~sf~~WYrplY~A~r~dss~~f~~FF~~~~~ 222 (272)
+-|.++..-+..++||..+ .++. +.-+|++|+++.++
T Consensus 1300 iP~~~~~~~if~~i~Y~m~--Gl~~-~~~~f~~~~~~~~l 1336 (1470)
T PLN03140 1300 IPYVLIQTTYYTLIVYAMV--AFEW-TAAKFFWFYFISFF 1336 (1470)
T ss_pred HHHHHHHHHHHHHHHHhhc--CCCc-cHHHHHHHHHHHHH
Confidence 4444444445556777663 3333 34567776665543
No 117
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=21.33 E-value=2e+02 Score=22.92 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024136 82 LKKKEKELQAKEAELRRREQDVRRK 106 (272)
Q Consensus 82 l~~ke~EL~~rE~EL~rRE~el~~r 106 (272)
+.++.++|+++-++|++..+.+...
T Consensus 84 l~~~~~~l~~~i~~l~~~~~~l~~~ 108 (116)
T cd04769 84 LEDKKQEIRAQITELQQLLARLDAF 108 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666665555543
No 118
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=21.33 E-value=1.7e+02 Score=30.08 Aligned_cols=23 Identities=26% Similarity=0.484 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHH
Q 024136 82 LKKKEKELQAKEAELRR-REQDVR 104 (272)
Q Consensus 82 l~~ke~EL~~rE~EL~r-RE~el~ 104 (272)
+++||-.+++.|=.++. |||||+
T Consensus 521 ~qekQiq~Ek~ELkmd~lrerelr 544 (641)
T KOG3915|consen 521 AQEKQIQLEKTELKMDFLRERELR 544 (641)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555544444 666665
No 119
>PF11831 Myb_Cef: pre-mRNA splicing factor component; InterPro: IPR021786 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is typically between 73 to 279 amino acids in length.
Probab=21.08 E-value=1.4e+02 Score=27.12 Aligned_cols=16 Identities=19% Similarity=0.574 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHh
Q 024136 97 RRREQDVRRKEEAAAR 112 (272)
Q Consensus 97 ~rRE~el~~re~~~~~ 112 (272)
+++++++++|.+++++
T Consensus 117 ~~e~~e~~rRSqvvQR 132 (231)
T PF11831_consen 117 EEEEKELKRRSQVVQR 132 (231)
T ss_pred HHHHHHHHHhhHHHHc
Confidence 4456667777766654
No 120
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=21.08 E-value=1.8e+02 Score=26.64 Aligned_cols=27 Identities=19% Similarity=0.439 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024136 81 DLKKKEKELQAKEAELRRREQDVRRKE 107 (272)
Q Consensus 81 el~~ke~EL~~rE~EL~rRE~el~~re 107 (272)
+..+..++++..++||++++.+|+.++
T Consensus 152 ~~~~~~~~~~kL~~el~~~~~~Le~~~ 178 (216)
T KOG1962|consen 152 ENDKLKADLEKLETELEKKQKKLEKAQ 178 (216)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 445556667777777777777776554
No 121
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=21.08 E-value=69 Score=30.38 Aligned_cols=27 Identities=33% Similarity=0.519 Sum_probs=21.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHH
Q 024136 77 DTAADLKKKEKELQAKEAELRRREQDV 103 (272)
Q Consensus 77 ~~~~el~~ke~EL~~rE~EL~rRE~el 103 (272)
+.++|+++-|+||.++|.|+++.|+.+
T Consensus 158 ~~~eE~eEVe~el~~~~~~~~~~~~~~ 184 (294)
T KOG2881|consen 158 EGQEELEEVEAELAKREDELDRLEEGL 184 (294)
T ss_pred cchhhHHHHHHHHHhccchhhhhhhcC
Confidence 346788888889988888888866554
No 122
>cd04770 HTH_HMRTR Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=21.06 E-value=2.1e+02 Score=22.75 Aligned_cols=23 Identities=35% Similarity=0.424 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024136 82 LKKKEKELQAKEAELRRREQDVR 104 (272)
Q Consensus 82 l~~ke~EL~~rE~EL~rRE~el~ 104 (272)
++++.++|+++-++|++..+.|.
T Consensus 84 l~~~~~~l~~~i~~l~~~~~~l~ 106 (123)
T cd04770 84 LEEKLAEVEAKIAELQALRAELA 106 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555444444
No 123
>PF08248 Tryp_FSAP: Tryptophyllin-3 skin active peptide; InterPro: IPR013266 PdT-3 or Tryptophyllin-3 peptide is a subfamily of the family Tryptophyllin and of the superfamily FSAP (Frog Skin Active Peptide). Originally identified in skin extracts of Neotropical leaf frogs, Phyllomedusa sp. This subfamily has an average length of 13 amino acids. The pharmacological activity of the tryptophyllins remains to be established [] but it seems that these peptides possess an action on liver protein synthesis and body weight []. It is thought to possesses insulin-releasing activity [].
Probab=20.57 E-value=64 Score=16.37 Aligned_cols=9 Identities=44% Similarity=1.501 Sum_probs=5.8
Q ss_pred cCCCCC-CCc
Q 024136 119 EKNWPP-FFP 127 (272)
Q Consensus 119 ~~NwPp-f~P 127 (272)
++-||| .||
T Consensus 2 kpfw~ppiyp 11 (12)
T PF08248_consen 2 KPFWPPPIYP 11 (12)
T ss_pred CccCCCCccc
Confidence 466875 665
No 124
>cd00225 API3 Ascaris pepsin inhibitor-3 (API3); protein inhibitor that reversibly inhibits aspartic proteinase cathepsin E, and gastric enzymes pepsin and gastricsin.
Probab=20.53 E-value=2.2e+02 Score=24.75 Aligned_cols=28 Identities=11% Similarity=0.318 Sum_probs=18.5
Q ss_pred chHHHHHHHHHHHHHHHHHH----HHHHHHHH
Q 024136 78 TAADLKKKEKELQAKEAELR----RREQDVRR 105 (272)
Q Consensus 78 ~~~el~~ke~EL~~rE~EL~----rRE~el~~ 105 (272)
.+.||..+++|..+..+|++ +|++.++.
T Consensus 35 Eq~el~~y~~d~~~yK~~~k~~l~er~~~~~~ 66 (159)
T cd00225 35 EQQELAQYVEDVADYKEEVKQALKERQEGLKL 66 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 36678888888887777775 34444543
No 125
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.37 E-value=1.6e+02 Score=22.58 Aligned_cols=16 Identities=25% Similarity=0.397 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 024136 81 DLKKKEKELQAKEAEL 96 (272)
Q Consensus 81 el~~ke~EL~~rE~EL 96 (272)
||+.|...|...+.++
T Consensus 29 ELKEknn~l~~e~q~~ 44 (79)
T COG3074 29 ELKEKNNSLSQEVQNA 44 (79)
T ss_pred HHHHHhhHhHHHHHHH
Confidence 4444444443333333
No 126
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=20.20 E-value=3e+02 Score=27.95 Aligned_cols=7 Identities=0% Similarity=-0.035 Sum_probs=3.2
Q ss_pred HHHHHHh
Q 024136 182 AIIYFIA 188 (272)
Q Consensus 182 aily~l~ 188 (272)
+.+|-++
T Consensus 404 s~sw~ll 410 (506)
T KOG2507|consen 404 SESWNLL 410 (506)
T ss_pred chhhccc
Confidence 4555433
No 127
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=20.08 E-value=38 Score=27.95 Aligned_cols=47 Identities=11% Similarity=-0.045 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-cCCChhHHHHHHHHHHhhhhhhhhHhhHH
Q 024136 151 TYLGLFLCLLWNIVAVTTAWI-KGEGVKIWFLAIIYFIAGVPGAYVLWYRP 200 (272)
Q Consensus 151 ~wl~~~~~L~~N~i~~~~~~i-~g~~~~~f~laily~l~g~P~sf~~WYrp 200 (272)
.|+.+.+.-+..+++.+..-. .+.. .+.-. +..+.+.-+||++|.+-
T Consensus 3 ~wl~L~~Ai~~Ev~~t~~LK~s~g~~--~~~~~-~~~i~~~~~sf~~ls~a 50 (120)
T PRK10452 3 YWILLALAIATEITGTLSMKWASVSE--GNGGF-ILMLVMISLSYIFLSFA 50 (120)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhccCC--CcHHH-HHHHHHHHHHHHHHHHH
Confidence 366667777788887644322 2211 11112 22456667788876553
Done!