Query 024137
Match_columns 272
No_of_seqs 141 out of 1807
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 02:21:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024137.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024137hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06027 DUF914: Eukaryotic pr 100.0 1E-30 2.2E-35 231.5 28.0 257 14-270 6-271 (334)
2 KOG2766 Predicted membrane pro 99.9 1.7E-26 3.6E-31 191.6 2.7 251 15-267 12-264 (336)
3 PRK11272 putative DMT superfam 99.9 9.5E-21 2.1E-25 167.1 29.1 229 18-258 4-238 (292)
4 PLN00411 nodulin MtN21 family 99.9 2.1E-20 4.6E-25 168.6 27.9 242 23-267 15-291 (358)
5 PRK11689 aromatic amino acid e 99.9 1.6E-20 3.6E-25 165.8 25.6 227 22-258 5-240 (295)
6 TIGR00950 2A78 Carboxylate/Ami 99.9 2E-20 4.4E-25 161.8 25.3 211 34-258 2-217 (260)
7 TIGR00688 rarD rarD protein. T 99.9 1.5E-19 3.2E-24 156.5 26.8 219 21-258 2-233 (256)
8 PRK11453 O-acetylserine/cystei 99.9 4.3E-19 9.3E-24 157.1 27.9 224 24-258 7-240 (299)
9 PRK15430 putative chlorampheni 99.9 5.7E-19 1.2E-23 156.1 28.6 233 18-267 5-248 (296)
10 PRK10532 threonine and homoser 99.8 1.6E-18 3.4E-23 153.1 26.7 237 16-268 7-245 (293)
11 TIGR00817 tpt Tpt phosphate/ph 99.8 1.3E-18 2.8E-23 154.2 26.1 172 37-217 18-195 (302)
12 PTZ00343 triose or hexose phos 99.8 2.3E-17 5E-22 149.0 26.4 171 37-217 65-249 (350)
13 TIGR03340 phn_DUF6 phosphonate 99.8 3.2E-17 6.9E-22 143.8 23.8 164 23-196 3-172 (281)
14 COG0697 RhaT Permeases of the 99.7 1E-14 2.3E-19 127.3 27.5 181 18-205 4-191 (292)
15 KOG2765 Predicted membrane pro 99.6 4.1E-14 8.8E-19 124.1 17.5 257 15-271 8-357 (416)
16 COG5006 rhtA Threonine/homoser 99.6 1.1E-12 2.4E-17 109.6 22.6 230 22-267 13-245 (292)
17 COG2962 RarD Predicted permeas 99.6 2.6E-12 5.6E-17 109.8 23.7 187 17-219 3-197 (293)
18 PF08449 UAA: UAA transporter 99.6 3.5E-12 7.7E-17 113.1 24.9 183 35-217 14-205 (303)
19 KOG4510 Permease of the drug/m 99.5 7.5E-16 1.6E-20 129.2 -0.3 195 18-216 35-239 (346)
20 TIGR00776 RhaT RhaT L-rhamnose 99.5 4.8E-12 1E-16 111.5 23.4 184 22-212 2-197 (290)
21 COG2510 Predicted membrane pro 99.5 1.1E-12 2.3E-17 98.6 11.2 129 22-152 4-138 (140)
22 PF04142 Nuc_sug_transp: Nucle 99.5 2.1E-11 4.5E-16 104.6 20.8 177 78-258 14-206 (244)
23 PF00892 EamA: EamA-like trans 99.4 2.8E-12 6.2E-17 97.9 9.8 118 32-152 2-125 (126)
24 PF13536 EmrE: Multidrug resis 99.3 2.7E-11 5.8E-16 91.8 12.4 100 56-156 2-109 (113)
25 TIGR00950 2A78 Carboxylate/Ami 99.3 1.4E-10 2.9E-15 100.3 16.5 130 19-148 126-259 (260)
26 KOG2234 Predicted UDP-galactos 99.2 9.5E-08 2.1E-12 84.2 26.7 232 23-258 17-275 (345)
27 KOG1441 Glucose-6-phosphate/ph 99.1 5.7E-09 1.2E-13 92.0 14.6 211 40-258 36-260 (316)
28 PRK10532 threonine and homoser 99.0 2E-08 4.4E-13 88.6 18.0 133 20-155 147-283 (293)
29 KOG4314 Predicted carbohydrate 99.0 3.1E-09 6.7E-14 86.1 11.2 105 86-195 58-162 (290)
30 PRK11272 putative DMT superfam 99.0 1.7E-08 3.7E-13 89.0 15.8 133 20-155 149-287 (292)
31 KOG3912 Predicted integral mem 98.9 2.1E-07 4.5E-12 79.4 17.0 164 48-211 36-221 (372)
32 PLN00411 nodulin MtN21 family 98.8 1.4E-07 3E-12 85.5 16.0 137 18-155 186-330 (358)
33 PRK11453 O-acetylserine/cystei 98.8 2.5E-07 5.3E-12 81.9 17.3 136 20-155 142-289 (299)
34 PRK11689 aromatic amino acid e 98.8 1.2E-07 2.7E-12 83.7 15.2 131 20-155 155-289 (295)
35 KOG1581 UDP-galactose transpor 98.8 2.8E-06 6.1E-11 73.4 22.4 167 47-213 47-219 (327)
36 TIGR03340 phn_DUF6 phosphonate 98.8 1.1E-07 2.3E-12 83.5 11.9 129 21-151 144-281 (281)
37 TIGR00776 RhaT RhaT L-rhamnose 98.8 1.7E-07 3.7E-12 82.6 13.1 132 17-153 148-288 (290)
38 TIGR00817 tpt Tpt phosphate/ph 98.7 2.3E-07 5E-12 82.2 13.7 136 20-155 144-295 (302)
39 KOG1444 Nucleotide-sugar trans 98.7 4.8E-06 1E-10 72.6 21.0 196 15-218 6-209 (314)
40 PRK15430 putative chlorampheni 98.7 4.4E-07 9.6E-12 80.2 14.5 72 84-155 216-287 (296)
41 PF03151 TPT: Triose-phosphate 98.7 1.8E-06 3.9E-11 68.4 15.7 130 22-151 1-151 (153)
42 PRK15051 4-amino-4-deoxy-L-ara 98.6 2.6E-07 5.7E-12 69.6 9.6 67 86-152 41-108 (111)
43 COG0697 RhaT Permeases of the 98.6 2.7E-06 5.9E-11 74.0 16.8 133 19-154 152-288 (292)
44 PTZ00343 triose or hexose phos 98.6 3.8E-06 8.3E-11 76.1 16.7 133 20-152 193-347 (350)
45 PF06800 Sugar_transport: Suga 98.5 5.8E-05 1.3E-09 65.2 20.6 124 79-204 43-172 (269)
46 KOG1443 Predicted integral mem 98.4 1.3E-05 2.8E-10 69.4 14.3 168 48-222 42-223 (349)
47 COG5006 rhtA Threonine/homoser 98.4 1.6E-05 3.5E-10 67.1 13.7 130 21-152 148-281 (292)
48 PRK02971 4-amino-4-deoxy-L-ara 98.2 1.2E-05 2.6E-10 62.2 8.9 72 84-155 50-124 (129)
49 KOG1582 UDP-galactose transpor 98.1 5.5E-05 1.2E-09 64.6 12.0 181 35-218 57-242 (367)
50 PRK13499 rhamnose-proton sympo 98.1 0.00034 7.3E-09 62.8 17.4 164 17-184 3-190 (345)
51 PF05653 Mg_trans_NIPA: Magnes 98.1 0.00015 3.3E-09 64.2 14.6 122 16-155 2-124 (300)
52 PF08449 UAA: UAA transporter 98.1 0.0002 4.4E-09 63.5 15.2 135 21-155 154-299 (303)
53 KOG1580 UDP-galactose transpor 97.9 0.00033 7.1E-09 58.8 12.4 139 81-220 85-225 (337)
54 PF06800 Sugar_transport: Suga 97.8 0.00039 8.5E-09 60.1 12.5 122 16-142 133-256 (269)
55 KOG1442 GDP-fucose transporter 97.8 0.00016 3.5E-09 61.9 9.4 169 48-221 58-239 (347)
56 PRK10650 multidrug efflux syst 97.8 0.00043 9.3E-09 51.8 10.2 61 91-151 44-106 (109)
57 PRK09541 emrE multidrug efflux 97.7 0.00049 1.1E-08 51.6 10.3 68 88-155 36-105 (110)
58 COG2076 EmrE Membrane transpor 97.7 0.00054 1.2E-08 50.6 9.6 65 89-153 37-103 (106)
59 PRK11431 multidrug efflux syst 97.7 0.00061 1.3E-08 50.6 10.0 64 89-152 36-101 (105)
60 PRK10452 multidrug efflux syst 97.6 0.00042 9.1E-09 52.7 8.7 68 88-155 36-105 (120)
61 PF04657 DUF606: Protein of un 97.5 0.0054 1.2E-07 48.0 13.7 127 23-150 3-138 (138)
62 COG5070 VRG4 Nucleotide-sugar 97.4 0.005 1.1E-07 51.4 12.8 187 37-224 22-213 (309)
63 COG4975 GlcU Putative glucose 97.3 3.7E-05 7.9E-10 64.7 -1.5 172 22-199 3-181 (288)
64 PF06027 DUF914: Eukaryotic pr 97.2 0.011 2.5E-07 53.0 13.8 138 16-155 163-307 (334)
65 PF00893 Multi_Drug_Res: Small 97.1 0.0075 1.6E-07 43.8 9.4 53 91-143 38-92 (93)
66 KOG4510 Permease of the drug/m 97.0 0.00064 1.4E-08 58.1 3.2 131 23-155 193-327 (346)
67 TIGR00688 rarD rarD protein. T 96.9 0.022 4.7E-07 49.1 12.5 49 80-128 207-255 (256)
68 TIGR00803 nst UDP-galactose tr 96.9 0.015 3.3E-07 49.0 11.0 67 84-150 155-221 (222)
69 COG2962 RarD Predicted permeas 96.9 0.07 1.5E-06 46.4 14.8 75 81-155 211-285 (293)
70 KOG1441 Glucose-6-phosphate/ph 96.9 0.0042 9.1E-08 55.2 7.5 136 20-155 162-309 (316)
71 PF10639 UPF0546: Uncharacteri 96.4 0.0093 2E-07 44.8 5.9 109 28-151 3-112 (113)
72 COG2510 Predicted membrane pro 96.3 0.053 1.1E-06 41.4 9.3 89 169-258 4-92 (140)
73 COG3238 Uncharacterized protei 96.3 0.24 5.2E-06 39.1 13.1 131 20-151 4-144 (150)
74 KOG2765 Predicted membrane pro 96.2 0.054 1.2E-06 48.7 10.2 139 17-156 243-393 (416)
75 KOG1583 UDP-N-acetylglucosamin 96.2 0.0072 1.6E-07 52.0 4.6 170 41-210 23-208 (330)
76 KOG1581 UDP-galactose transpor 96.2 0.071 1.5E-06 46.6 10.5 136 18-153 169-313 (327)
77 PF03151 TPT: Triose-phosphate 96.1 0.1 2.2E-06 40.8 10.5 54 169-222 1-61 (153)
78 PRK13499 rhamnose-proton sympo 96.0 0.32 6.9E-06 43.9 14.2 138 15-154 168-342 (345)
79 TIGR00803 nst UDP-galactose tr 95.8 0.17 3.6E-06 42.6 11.1 86 109-194 6-111 (222)
80 PF00892 EamA: EamA-like trans 95.6 0.029 6.4E-07 41.9 5.5 79 178-258 1-79 (126)
81 KOG1580 UDP-galactose transpor 95.1 0.22 4.8E-06 42.2 9.2 75 80-154 240-314 (337)
82 KOG2922 Uncharacterized conser 95.1 0.016 3.5E-07 51.0 2.6 71 85-155 67-138 (335)
83 PF06379 RhaT: L-rhamnose-prot 94.3 1.5 3.1E-05 39.4 13.0 168 18-189 4-194 (344)
84 PF04142 Nuc_sug_transp: Nucle 94.2 1.9 4.1E-05 37.0 13.4 127 16-142 109-242 (244)
85 KOG1582 UDP-galactose transpor 93.5 0.5 1.1E-05 41.0 8.2 144 12-155 180-334 (367)
86 PRK02237 hypothetical protein; 93.5 2 4.2E-05 31.8 10.2 54 102-155 52-107 (109)
87 KOG1444 Nucleotide-sugar trans 92.9 1.2 2.6E-05 39.4 9.9 136 20-155 156-302 (314)
88 PF02694 UPF0060: Uncharacteri 91.9 1.6 3.5E-05 32.2 8.0 55 101-155 50-105 (107)
89 KOG1443 Predicted integral mem 90.6 8.5 0.00018 34.1 12.4 132 20-151 163-313 (349)
90 COG4975 GlcU Putative glucose 89.7 0.21 4.6E-06 42.6 1.9 66 77-142 205-270 (288)
91 PF04657 DUF606: Protein of un 88.1 4.8 0.0001 31.3 8.5 51 170-220 3-54 (138)
92 COG5070 VRG4 Nucleotide-sugar 87.7 2.9 6.3E-05 35.3 7.3 104 52-155 186-298 (309)
93 KOG3912 Predicted integral mem 87.6 9.5 0.00021 33.5 10.5 138 14-151 169-332 (372)
94 KOG1583 UDP-N-acetylglucosamin 85.3 7.3 0.00016 34.1 8.7 138 16-153 159-314 (330)
95 KOG1442 GDP-fucose transporter 84.3 1.6 3.4E-05 38.0 4.3 135 19-153 183-327 (347)
96 COG1742 Uncharacterized conser 80.4 21 0.00045 26.3 8.6 55 101-155 50-106 (109)
97 PF07698 7TM-7TMR_HD: 7TM rece 74.4 45 0.00098 27.1 20.5 74 184-258 118-191 (194)
98 KOG4831 Unnamed protein [Funct 70.7 12 0.00027 27.6 4.9 68 84-151 55-123 (125)
99 PF07857 DUF1632: CEO family ( 66.2 87 0.0019 27.1 12.8 124 26-154 5-135 (254)
100 PF04342 DUF486: Protein of un 53.2 91 0.002 23.1 8.4 51 101-151 55-106 (108)
101 COG4657 RnfA Predicted NADH:ub 51.5 63 0.0014 25.9 6.1 81 124-211 88-181 (193)
102 PF06379 RhaT: L-rhamnose-prot 49.8 2E+02 0.0043 26.1 15.4 141 12-153 164-340 (344)
103 COG3238 Uncharacterized protei 48.4 1.3E+02 0.0027 23.9 7.4 52 167-218 4-56 (150)
104 COG2807 CynX Cyanate permease 44.8 2.6E+02 0.0056 25.9 13.5 55 18-73 210-269 (395)
105 KOG2234 Predicted UDP-galactos 43.3 2.6E+02 0.0056 25.4 14.8 137 18-155 180-324 (345)
106 PF09656 PGPGW: Putative trans 43.2 82 0.0018 20.2 4.7 44 136-191 4-47 (53)
107 PF05653 Mg_trans_NIPA: Magnes 42.6 78 0.0017 28.0 6.2 61 95-155 227-294 (300)
108 PF05297 Herpes_LMP1: Herpesvi 42.3 8.3 0.00018 33.7 0.0 25 126-150 69-94 (381)
109 PF06123 CreD: Inner membrane 41.6 3E+02 0.0066 25.8 11.7 76 112-194 302-377 (430)
110 COG3104 PTR2 Dipeptide/tripept 40.0 3.5E+02 0.0075 26.0 12.8 45 110-154 326-379 (498)
111 PF08042 PqqA: PqqA family; I 36.4 18 0.00038 18.3 0.6 8 1-8 1-8 (20)
112 COG3086 RseC Positive regulato 36.1 72 0.0016 25.1 4.3 28 101-128 68-95 (150)
113 KOG4332 Predicted sugar transp 35.1 3.3E+02 0.0072 24.4 9.1 95 171-272 290-390 (454)
114 PRK11715 inner membrane protei 34.5 4E+02 0.0086 25.1 11.5 71 117-194 313-383 (436)
115 PF03631 Virul_fac_BrkB: Virul 33.9 2.9E+02 0.0064 23.4 12.2 12 53-64 160-171 (260)
116 PF04246 RseC_MucC: Positive r 33.8 70 0.0015 24.5 4.0 44 104-148 64-107 (135)
117 PRK10862 SoxR reducing system 33.4 75 0.0016 25.2 4.2 27 102-128 69-95 (154)
118 PF10951 DUF2776: Protein of u 28.5 4E+02 0.0087 23.7 8.0 21 167-187 320-340 (347)
119 PF01654 Bac_Ubq_Cox: Bacteria 27.6 5.2E+02 0.011 24.3 13.0 38 167-204 215-252 (436)
120 PRK11380 hypothetical protein; 24.2 5.5E+02 0.012 23.4 8.5 53 15-67 32-87 (353)
121 PF10754 DUF2569: Protein of u 22.4 3.3E+02 0.0071 21.2 6.0 26 165-190 118-143 (149)
122 COG3952 Predicted membrane pro 22.1 3.4E+02 0.0073 20.1 7.2 51 23-73 27-78 (113)
123 COG3965 Predicted Co/Zn/Cd cat 22.1 5.4E+02 0.012 22.6 11.6 103 32-134 105-214 (314)
124 PF11361 DUF3159: Protein of u 21.3 4.7E+02 0.01 21.5 7.3 76 109-190 28-103 (187)
125 PF12911 OppC_N: N-terminal TM 20.9 2.2E+02 0.0049 17.7 4.2 39 7-45 2-40 (56)
126 CHL00196 psbY photosystem II p 20.3 1.5E+02 0.0032 17.4 2.6 20 169-188 7-26 (36)
No 1
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=100.00 E-value=1e-30 Score=231.45 Aligned_cols=257 Identities=44% Similarity=0.760 Sum_probs=228.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhcch------hhhhHHHHHHH
Q 024137 14 HVTLRTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQR------LRVAWYWYLLL 87 (272)
Q Consensus 14 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~------~~~~~~~~~~~ 87 (272)
.+++++++.+++|++++++.++++.+++.+.+.+..-|...++.-|....++..+....|+.. .+++|+++++.
T Consensus 6 ~~~~~~~~~~~lgQ~lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~ll 85 (334)
T PF06027_consen 6 LFTRRFWIVLLLGQVLSLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLL 85 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHH
Confidence 378899999999999999999999999999988777799999999988777776665444322 35678889999
Q ss_pred HHHHHHHHHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhccccCCC--CCCCCCC
Q 024137 88 GFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGG--DGGGGSR 165 (272)
Q Consensus 88 g~~~~~~~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~~~~--~~~~~~~ 165 (272)
|++...+|++...|++|++.+.+.++.++..+++++++++++|||.++.|++|+++++.|+.++...|... ++..+.+
T Consensus 86 a~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~ 165 (334)
T PF06027_consen 86 ALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSN 165 (334)
T ss_pred HHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999998887522 1123456
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhccCCChHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHH
Q 024137 166 PLLGDVLVIAGTIFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILELKSLESVEWSTNILLGFAGYAASSFM 245 (272)
Q Consensus 166 ~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~g~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (272)
...||+++++|+..||++++..|+..|+.|..+......++|.++..+....+|++..+..+|+...+..++++.++++.
T Consensus 166 ~i~GDll~l~~a~lya~~nV~~E~~v~~~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~~~~lf~ 245 (334)
T PF06027_consen 166 PILGDLLALLGAILYAVSNVLEEKLVKKAPRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGYALCLFL 245 (334)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999998778888988888888998888889999999999
Q ss_pred HHhhHHHHHHhhh-hhhhhhhhhccC
Q 024137 246 FYTLAPFVLKVIL-LFANCYLLIRFP 270 (272)
Q Consensus 246 ~y~~~~~~~k~~~-~~~~~~~~~~~~ 270 (272)
+|++.|..+|+++ +++|+++++.-|
T Consensus 246 ~y~l~p~~l~~ssAt~~nLsLLTsd~ 271 (334)
T PF06027_consen 246 FYSLVPIVLRMSSATFFNLSLLTSDF 271 (334)
T ss_pred HHHHHHHHHHhCccceeehHHHHhhH
Confidence 9999999999987 699999987543
No 2
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=99.92 E-value=1.7e-26 Score=191.55 Aligned_cols=251 Identities=43% Similarity=0.794 Sum_probs=225.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHH
Q 024137 15 VTLRTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQRLRVAWYWYLLLGFVDVQG 94 (272)
Q Consensus 15 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 94 (272)
++||+++|..+|++..+|.++.++.++.+++++...|...+|..|...+++..++...|++..+..|+.+++.++...-+
T Consensus 12 ~tkk~li~~~LGQiLSL~~t~~a~tss~la~k~iN~Pt~QtFl~Y~LLalVY~~~~~fR~~~~~~~~~hYilla~~DVEa 91 (336)
T KOG2766|consen 12 STKKTLIGLGLGQILSLLITSTAFTSSELARKGINAPTSQTFLNYVLLALVYGPIMLFRRKYIKAKWRHYILLAFVDVEA 91 (336)
T ss_pred hchhhhheeeHHHHHHHHHHcchhhhHHHHhccCCCccHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHhhheeEEeecc
Confidence 38899999999999999999999999999988788899999999999999999998888877777888899999999999
Q ss_pred HHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhccccCCC-CCCCCCCchhHHHHH
Q 024137 95 NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGG-DGGGGSRPLLGDVLV 173 (272)
Q Consensus 95 ~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~~~~-~~~~~~~~~~G~~~~ 173 (272)
|++...|+||++-..+.++.+-....+.+++|+++|.|-.+.++.|+.+++.|+.+++.+|... +...++++..||.+.
T Consensus 92 Ny~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggsnp~~GD~lv 171 (336)
T KOG2766|consen 92 NYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGSNPVKGDFLV 171 (336)
T ss_pred cEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccccccCCCCCccCcEEE
Confidence 9999999999999999999998888999999999999999999999999999999999887622 223356778999999
Q ss_pred HHHHHHHHHHHHHHhhhccCCChHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHhhHHHH
Q 024137 174 IAGTIFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILELKSLESVEWSTNILLGFAGYAASSFMFYTLAPFV 253 (272)
Q Consensus 174 l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~g~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~ 253 (272)
++++-+||+.++..+...|+.|..+++....++|+++..|- .+++..+....+|++....+ +.+.++++++|.+.|.+
T Consensus 172 i~GATlYaVSNv~EEflvkn~d~~elm~~lgLfGaIIsaIQ-~i~~~~~~~tl~w~~~i~~y-l~f~L~MFllYsl~pil 249 (336)
T KOG2766|consen 172 IAGATLYAVSNVSEEFLVKNADRVELMGFLGLFGAIISAIQ-FIFERHHVSTLHWDSAIFLY-LRFALTMFLLYSLAPIL 249 (336)
T ss_pred EecceeeeeccccHHHHHhcCcHHHHHHHHHHHHHHHHHHH-HhhhccceeeEeehHHHHHH-HHHHHHHHHHHHhhHHh
Confidence 99999999999999999999999999999999999999865 77888777778888555544 44889999999999999
Q ss_pred HHhhh-hhhhhhhhh
Q 024137 254 LKVIL-LFANCYLLI 267 (272)
Q Consensus 254 ~k~~~-~~~~~~~~~ 267 (272)
+|+++ ..+|+++|+
T Consensus 250 ~k~~~aT~~nlslLT 264 (336)
T KOG2766|consen 250 IKTNSATMFNLSLLT 264 (336)
T ss_pred eecCCceEEEhhHhH
Confidence 99977 599999986
No 3
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.90 E-value=9.5e-21 Score=167.08 Aligned_cols=229 Identities=16% Similarity=0.148 Sum_probs=161.5
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhcch--hhhhHHHHHHHHHHHHHH
Q 024137 18 RTLYLLFLGQLVSF-TLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQR--LRVAWYWYLLLGFVDVQG 94 (272)
Q Consensus 18 ~~~~~~~~~~~~a~-~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~--~~~~~~~~~~~g~~~~~~ 94 (272)
|.+..+....+... .|+.+..+.|... ++.+|...+++|+..++++++++..+++++ .+++++.....|.++...
T Consensus 4 ~~~~~~~~~~~~~~~iWg~~~~~~K~~~--~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 81 (292)
T PRK11272 4 RQLLPLFGALFALYIIWGSTYLVIRIGV--ESWPPLMMAGVRFLIAGILLLAFLLLRGHPLPTLRQWLNAALIGLLLLAV 81 (292)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHh--ccCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHH
Confidence 34444544455554 4555555555444 378999999999999999888876554432 345577777888877655
Q ss_pred -HHHHHHHh-hcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhccccCCCCCCCCCCchhHHHH
Q 024137 95 -NFLVNKAY-QFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLLGDVL 172 (272)
Q Consensus 95 -~~l~~~al-~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~~~~~~~~~~~~~~G~~~ 172 (272)
+.+++.+. +++++++++++.++.|+++.+++.+ +|||+++++++|+.++++|+.++..++. .+.+..|+++
T Consensus 82 ~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~------~~~~~~G~l~ 154 (292)
T PRK11272 82 GNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGN------LSGNPWGAIL 154 (292)
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCcc------cccchHHHHH
Confidence 77788888 9999999999999999999999985 7999999999999999999998865431 1233579999
Q ss_pred HHHHHHHHHHHHHHHhhhccCCChHHHHHHHHHHHHHHHHHHHHHhhcccccc-ccchhHHHHHHHHHHHHHHHHHhhHH
Q 024137 173 VIAGTIFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILELKSLES-VEWSTNILLGFAGYAASSFMFYTLAP 251 (272)
Q Consensus 173 ~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~g~i~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~y~~~~ 251 (272)
+++++++||.|.+..||..++ ++...+.+++..+++.+. +......++... .+........+.+. .+....|.++.
T Consensus 155 ~l~a~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~l~i-~~s~~~~~l~~ 231 (292)
T PRK11272 155 ILIASASWAFGSVWSSRLPLP-VGMMAGAAEMLAAGVVLL-IASLLSGERLTALPTLSGFLALGYLAV-FGSIIAISAYM 231 (292)
T ss_pred HHHHHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHHHHH-HHHHHcCCcccccCCHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 999999999999999997543 445566788888888775 443332221111 11222223333333 34445667777
Q ss_pred HHHHhhh
Q 024137 252 FVLKVIL 258 (272)
Q Consensus 252 ~~~k~~~ 258 (272)
..+|+.+
T Consensus 232 ~~~~~~~ 238 (292)
T PRK11272 232 YLLRNVR 238 (292)
T ss_pred HHHhhcC
Confidence 7888865
No 4
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.89 E-value=2.1e-20 Score=168.58 Aligned_cols=242 Identities=14% Similarity=0.167 Sum_probs=171.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHh-c-ch-h---hhhHHHHHHHHHHHHHHHH
Q 024137 23 LFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYR-R-QR-L---RVAWYWYLLLGFVDVQGNF 96 (272)
Q Consensus 23 ~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~-~-~~-~---~~~~~~~~~~g~~~~~~~~ 96 (272)
..-.+...++..+...++|...+ .+.+|....++|+.+++++++++.+++ + ++ . ++++.+..+.|+++...+.
T Consensus 15 ~~~~~~~q~~~~~~~~~~k~a~~-~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g~~~~~ 93 (358)
T PLN00411 15 LTAMLATETSVVGISTLFKVATS-KGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLGSMYVI 93 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-CCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHHH
Confidence 33444455677888888888884 578899999999999999998876532 2 11 1 2345677888888833377
Q ss_pred HHHHHhhcchhhHHHHhhhhhHHHHHHHHHHH------hcccchhhHHHHHHHHHhhhhhhccccCCC------------
Q 024137 97 LVNKAYQFSSITSVTLLDCCTIAWAIVLTWLF------LGTRYSLWQLLGAALCVLGLGLVLLSDAGG------------ 158 (272)
Q Consensus 97 l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~------~~er~s~~~~~gi~l~~~Gv~ll~~~~~~~------------ 158 (272)
+++.|++|+++++++++.++.|+++.++++++ +|||+++.+++|+.++++|+.++...+...
T Consensus 94 ~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~ 173 (358)
T PLN00411 94 TGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYLNF 173 (358)
T ss_pred HHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccccccccccccc
Confidence 88999999999999999999999999999999 699999999999999999999987543100
Q ss_pred -----CCCCCCCc-hhHHHHHHHHHHHHHHHHHHHhhhccCCChH-HHHHHHHHHHHHHHHHHHHHhhcccccc--ccch
Q 024137 159 -----DGGGGSRP-LLGDVLVIAGTIFFATSNVGEEFFVKKKDRV-EVVCMIGVYGLLVSAVQLSILELKSLES--VEWS 229 (272)
Q Consensus 159 -----~~~~~~~~-~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~-~~~~~~~~~g~i~~~i~~~~~~~~~~~~--~~~~ 229 (272)
+...+..+ ..|+.++++|+++||+|+++.|+..+++++. ..+.+++.++++.+.++....++++... ..++
T Consensus 174 ~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 253 (358)
T PLN00411 174 RQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFD 253 (358)
T ss_pred cccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccc
Confidence 00011122 4599999999999999999999987787654 5566777777777765555555432211 1222
Q ss_pred hHHH-HHHHHHHHHHHHHHhhHHHHHHhhh-hhhhhhhhh
Q 024137 230 TNIL-LGFAGYAASSFMFYTLAPFVLKVIL-LFANCYLLI 267 (272)
Q Consensus 230 ~~~~-~~~~~~~~~~~~~y~~~~~~~k~~~-~~~~~~~~~ 267 (272)
...+ ..+.+. ...+.|.++...+|+.+ +.+.+.+.+
T Consensus 254 ~~~~~i~y~~i--~t~lay~lw~~~v~~~ga~~as~~~~L 291 (358)
T PLN00411 254 ITLITIVTMAI--ITSVYYVIHSWTVRHKGPLYLAIFKPL 291 (358)
T ss_pred hHHHHHHHHHH--HHHHHHHHHHHHHhccCchHHHHHHhH
Confidence 2221 222332 23456778888888855 555555443
No 5
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.88 E-value=1.6e-20 Score=165.81 Aligned_cols=227 Identities=16% Similarity=0.082 Sum_probs=154.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHH-HHHHHH
Q 024137 22 LLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQRLRVAWYWYLLLGFVDVQG-NFLVNK 100 (272)
Q Consensus 22 ~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~l~~~ 100 (272)
+.+.+.+..++|+++....|... ++.+|....++|+.++.+++.++.. +++.++++++..+.+.+.... +.+++.
T Consensus 5 ~~l~~l~a~~~Wg~~~~~~k~~~--~~~~P~~~~~~R~~~a~l~l~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (295)
T PRK11689 5 ATLIGLIAILLWSTMVGLIRGVS--ESLGPVGGAAMIYSVSGLLLLLTVG--FPRLRQFPKRYLLAGGLLFVSYEICLAL 80 (295)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH--ccCChHHHHHHHHHHHHHHHHHHcc--ccccccccHHHHHHHhHHHHHHHHHHHH
Confidence 45666666777776666666654 4789999999999999988876532 222233333445555555555 666666
Q ss_pred Hhh----cchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhccccCCCCC----CCCCCchhHHHH
Q 024137 101 AYQ----FSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDG----GGGSRPLLGDVL 172 (272)
Q Consensus 101 al~----~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~~~~~~----~~~~~~~~G~~~ 172 (272)
+++ +.++++++++.++.|+++.+++++++|||++++++.|+.++++|+.++..++.+.+. +....+..|+.+
T Consensus 81 a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~G~~~ 160 (295)
T PRK11689 81 SLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIASNPLSYGL 160 (295)
T ss_pred HHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhccccChHHHHH
Confidence 665 467888899999999999999999999999999999999999999999865421000 001123579999
Q ss_pred HHHHHHHHHHHHHHHhhhccCCChHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHhhHHH
Q 024137 173 VIAGTIFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILELKSLESVEWSTNILLGFAGYAASSFMFYTLAPF 252 (272)
Q Consensus 173 ~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~g~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~ 252 (272)
+++|+++||.|+++.||..++.++..... ..+...+. +....+.+... +++...+......+++....|.++..
T Consensus 161 ~l~aa~~~A~~~v~~k~~~~~~~~~~~~~---~~~~~~l~-~~~~~~~~~~~--~~~~~~~~~l~~~~~~t~~~~~l~~~ 234 (295)
T PRK11689 161 AFIGAFIWAAYCNVTRKYARGKNGITLFF---ILTALALW-IKYFLSPQPAM--VFSLPAIIKLLLAAAAMGFGYAAWNV 234 (295)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCchhHHH---HHHHHHHH-HHHHHhcCccc--cCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999877777765422 22333333 22223322212 23333333333233456777888889
Q ss_pred HHHhhh
Q 024137 253 VLKVIL 258 (272)
Q Consensus 253 ~~k~~~ 258 (272)
.+|+.+
T Consensus 235 al~~~~ 240 (295)
T PRK11689 235 GILHGN 240 (295)
T ss_pred HHHccC
Confidence 999866
No 6
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.88 E-value=2e-20 Score=161.84 Aligned_cols=211 Identities=18% Similarity=0.040 Sum_probs=157.5
Q ss_pred HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHH-HHHHHHHhhcchhhHHHH
Q 024137 34 ALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQRLRVAWYWYLLLGFVDVQG-NFLVNKAYQFSSITSVTL 112 (272)
Q Consensus 34 ~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~l~~~al~~~~a~~a~~ 112 (272)
+.+....|... +++.||....+.|+..+.+.+.+...++ +.++++++....|.++... +.+++.|+++++++++++
T Consensus 2 g~~~~~~k~~~-~~~~~~~~~~~~r~~~~~l~l~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~i 78 (260)
T TIGR00950 2 GTTGVVIGQYL-EGQVPLYFAVFRRLIFALLLLLPLLRRR--PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGEAAL 78 (260)
T ss_pred cchHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHHHhc--cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHH
Confidence 34455555544 3468899999999988888877765444 3345666788888888777 888999999999999999
Q ss_pred hhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhccccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhhhcc
Q 024137 113 LDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLLGDVLVIAGTIFFATSNVGEEFFVK 192 (272)
Q Consensus 113 l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~ 192 (272)
+.++.|+++++++.+++|||+++++++|+.++++|+.++..++. .+.+..|+.++++++++|+.+.++.|+..+
T Consensus 79 i~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~------~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~ 152 (260)
T TIGR00950 79 LLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGN------LSINPAGLLLGLGSGISFALGTVLYKRLVK 152 (260)
T ss_pred HHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCc------ccccHHHHHHHHHHHHHHHHHHHHHhHHhh
Confidence 99999999999999999999999999999999999999875431 234568999999999999999999999877
Q ss_pred CCChH--HHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHH--HHHHHHHHHHHHHhhHHHHHHhhh
Q 024137 193 KKDRV--EVVCMIGVYGLLVSAVQLSILELKSLESVEWSTNILL--GFAGYAASSFMFYTLAPFVLKVIL 258 (272)
Q Consensus 193 ~~~~~--~~~~~~~~~g~i~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~y~~~~~~~k~~~ 258 (272)
+.|+. ....+.+..+.+++. +......+... .+...+. .+.+ .++....|.++...+|+.+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~ 217 (260)
T TIGR00950 153 KEGPELLQFTGWVLLLGALLLL-PFAWFLGPNPQ---ALSLQWGALLYLG-LIGTALAYFLWNKGLTLVD 217 (260)
T ss_pred cCCchHHHHHHHHHHHHHHHHH-HHHHhcCCCCC---cchHHHHHHHHHH-HHHHHHHHHHHHHHHhcCC
Confidence 77744 444466778877775 55444332221 1222332 2222 2344556777777888865
No 7
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.87 E-value=1.5e-19 Score=156.53 Aligned_cols=219 Identities=16% Similarity=0.077 Sum_probs=148.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhcc------hh----hhh-HHHHHHHHH
Q 024137 21 YLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQ------RL----RVA-WYWYLLLGF 89 (272)
Q Consensus 21 ~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~------~~----~~~-~~~~~~~g~ 89 (272)
||+.+..+++++|+..+.+.|.+. +.+|.++.++|...+.+++.++...+++ +. +++ +......|.
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~~~---~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 78 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKLLK---PLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGL 78 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhc---cCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHH
Confidence 488899999999999999999742 5899999999999998887765432211 11 111 222445555
Q ss_pred HHHHHHHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhccccCCCCCCCCCCchhH
Q 024137 90 VDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLLG 169 (272)
Q Consensus 90 ~~~~~~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~~~~~~~~~~~~~~G 169 (272)
+....+.++++|++++++++++.+.++.|+++++++++++|||+++++|.++.++++|+.++..++ ++..
T Consensus 79 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~-------~~~~--- 148 (256)
T TIGR00688 79 LIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLK-------GSLP--- 148 (256)
T ss_pred HHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHc-------CCch---
Confidence 544448899999999999999999999999999999999999999999999999999999886532 1111
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCChHHHHHHHHHHHHHHHHHHHHHhh-ccccccccc-hhHHHHHHHHHHHHHHHHH
Q 024137 170 DVLVIAGTIFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILE-LKSLESVEW-STNILLGFAGYAASSFMFY 247 (272)
Q Consensus 170 ~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~g~i~~~i~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~y 247 (272)
.++++++++||.|.+..||..+ .+....... ......... +..... .+..+..+. ..+.+..+.+ +.....|
T Consensus 149 -~~~l~aa~~~a~~~i~~~~~~~-~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~g--~~t~i~~ 222 (256)
T TIGR00688 149 -WEALVLAFSFTAYGLIRKALKN-TDLAGFCLE-TLSLMPVAI-YYLLQTDFATVQQTNPFPIWLLLVLAG--LITGTPL 222 (256)
T ss_pred -HHHHHHHHHHHHHHHHHhhcCC-CCcchHHHH-HHHHHHHHH-HHHHHhccCcccccCchhHHHHHHHHH--HHHHHHH
Confidence 4678999999999999999743 343322111 111111111 111111 111111111 1223333333 3355678
Q ss_pred hhHHHHHHhhh
Q 024137 248 TLAPFVLKVIL 258 (272)
Q Consensus 248 ~~~~~~~k~~~ 258 (272)
.++...+|+.+
T Consensus 223 ~l~~~a~~~~~ 233 (256)
T TIGR00688 223 LAFVIAANRLP 233 (256)
T ss_pred HHHHHHHHcCC
Confidence 88888999966
No 8
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.86 E-value=4.3e-19 Score=157.07 Aligned_cols=224 Identities=18% Similarity=0.167 Sum_probs=149.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHH-HHHHHHHh
Q 024137 24 FLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQRLRVAWYWYLLLGFVDVQG-NFLVNKAY 102 (272)
Q Consensus 24 ~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~l~~~al 102 (272)
+.....+++|+.+..+.|... ++.+|..+.++|+.++++.+.++..+++ .+++.....|+..... ..+++.++
T Consensus 7 l~~l~~~~~Wg~~~~~~k~~~--~~~~p~~~~~~R~~~a~~~l~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~ 80 (299)
T PRK11453 7 VLALLVVVVWGLNFVVIKVGL--HNMPPLMLAGLRFMLVAFPAIFFVARPK----VPLNLLLGYGLTISFGQFAFLFCAI 80 (299)
T ss_pred HHHHHHHHHHhhhHHHHHHHH--hcCCHHHHHHHHHHHHHHHHHHHhcCCC----CchHHHHHHHHHHHHHHHHHHHHHH
Confidence 446667778888888887765 3689999999999998776665543222 2233444556555445 55677899
Q ss_pred hc-chhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhccccCCCCCCCCCCchhHHHHHHHHHHHHH
Q 024137 103 QF-SSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLLGDVLVIAGTIFFA 181 (272)
Q Consensus 103 ~~-~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a 181 (272)
++ .++++++++.++.|+++.+++++++|||+++++++|+.++++|+.++..++. +....+..|+.++++++++|+
T Consensus 81 ~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~----~~~~~~~~G~~l~l~aal~~a 156 (299)
T PRK11453 81 NFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSL----NGQHVAMLGFMLTLAAAFSWA 156 (299)
T ss_pred HhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccC----CCcchhHHHHHHHHHHHHHHH
Confidence 88 5889999999999999999999999999999999999999999999885431 112233579999999999999
Q ss_pred HHHHHHhhhccCCChH---HHHHHHHHHHHHHHHHHHHHhhcccc---ccccchhHHH--HHHHHHHHHHHHHHhhHHHH
Q 024137 182 TSNVGEEFFVKKKDRV---EVVCMIGVYGLLVSAVQLSILELKSL---ESVEWSTNIL--LGFAGYAASSFMFYTLAPFV 253 (272)
Q Consensus 182 ~~~v~~k~~~~~~~~~---~~~~~~~~~g~i~~~i~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~~~~~~y~~~~~~ 253 (272)
.|.++.||..++.++. ....++...+.+.........+.+.. ...+++...+ ..+++. .+....|.++...
T Consensus 157 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i-~~t~~~~~l~~~~ 235 (299)
T PRK11453 157 CGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAF-VATIVGYGIWGTL 235 (299)
T ss_pred HHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 9999999976554332 33344444444333212222332211 0012232333 334443 4455566666666
Q ss_pred HHhhh
Q 024137 254 LKVIL 258 (272)
Q Consensus 254 ~k~~~ 258 (272)
+|+-+
T Consensus 236 l~~~~ 240 (299)
T PRK11453 236 LGRYE 240 (299)
T ss_pred HHhCC
Confidence 66644
No 9
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.86 E-value=5.7e-19 Score=156.07 Aligned_cols=233 Identities=14% Similarity=0.025 Sum_probs=155.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhcc--hh---hhhHH--HHHHHHHH
Q 024137 18 RTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQ--RL---RVAWY--WYLLLGFV 90 (272)
Q Consensus 18 ~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~--~~---~~~~~--~~~~~g~~ 90 (272)
++.+|.++..+++++|+..+.+.|.. ++.+|..+.++|+..+.+++.++...+++ .. .++++ .....+.+
T Consensus 5 ~~~~g~~~~l~a~~~wg~~~~~~k~~---~~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (296)
T PRK15430 5 QTRQGVLLALAAYFIWGIAPAYFKLI---YYVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAV 81 (296)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHHHHH
Confidence 55679999999999999999998765 25889999999999998877766543221 11 11222 23346666
Q ss_pred HHHH-HHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhccccCCCCCCCCCCchhH
Q 024137 91 DVQG-NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLLG 169 (272)
Q Consensus 91 ~~~~-~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~~~~~~~~~~~~~~G 169 (272)
+... +.++++|++++++++++++.++.|+++.+++++++|||+++++|.|+.++++|+.++..++ ++.
T Consensus 82 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~-------~~~---- 150 (296)
T PRK15430 82 LIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTF-------GSL---- 150 (296)
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHc-------CCc----
Confidence 6666 8899999999999999999999999999999999999999999999999999999987543 111
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCC--hHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHH
Q 024137 170 DVLVIAGTIFFATSNVGEEFFVKKKD--RVEVVCMIGVYGLLVSAVQLSILELKSLESVEWSTNILLGFAGYAASSFMFY 247 (272)
Q Consensus 170 ~~~~l~a~~~~a~~~v~~k~~~~~~~--~~~~~~~~~~~g~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 247 (272)
..++++++++||+|.+..||..++.. ......++...+.+... +. .+.+.....+.+...+..+...++.....|
T Consensus 151 ~~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~g~~t~i~~ 227 (296)
T PRK15430 151 PIIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLF-AI--ADSSTSHMGQNPMSLNLLLIAAGIVTTVPL 227 (296)
T ss_pred cHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHH-HH--ccCCcccccCCcHHHHHHHHHHHHHHHHHH
Confidence 15688899999999999999643322 22223333333332221 11 111111000111111122222222344567
Q ss_pred hhHHHHHHhhh-hhhhhhhhh
Q 024137 248 TLAPFVLKVIL-LFANCYLLI 267 (272)
Q Consensus 248 ~~~~~~~k~~~-~~~~~~~~~ 267 (272)
.++....|+.+ ..+++...+
T Consensus 228 ~~~~~a~~~~~a~~~s~~~~l 248 (296)
T PRK15430 228 LCFTAAATRLRLSTLGFFQYI 248 (296)
T ss_pred HHHHHHHhcCCHHHHHHHHHH
Confidence 78888888865 455544433
No 10
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.85 E-value=1.6e-18 Score=153.07 Aligned_cols=237 Identities=14% Similarity=0.058 Sum_probs=169.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhcc-hhhhhHHHHHHHHHHHHHH
Q 024137 16 TLRTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQ-RLRVAWYWYLLLGFVDVQG 94 (272)
Q Consensus 16 ~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~g~~~~~~ 94 (272)
|-+..+++.+..++.++|+..+.+.|...+ +.+|..+.++|+.++.++++++.+++++ ..+++++.....|.+....
T Consensus 7 ~~~~~~~~~~~~la~~~~~~~~~~~K~~~~--~~~~~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 84 (293)
T PRK10532 7 KLPVWLPILLLLIAMASIQSGASLAKSLFP--LVGAPGVTALRLALGTLILIAIFKPWRLRFAKEQRLPLLFYGVSLGGM 84 (293)
T ss_pred ccccchHHHHHHHHHHHHHhhHHHHHHHHH--HcCHHHHHHHHHHHHHHHHHHHHhHHhccCCHHHHHHHHHHHHHHHHH
Confidence 445588999999999999999999888874 5899999999999999888876644332 2245566677788765455
Q ss_pred HHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhccccCCCCCCCCCCchhHHHHHH
Q 024137 95 NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLLGDVLVI 174 (272)
Q Consensus 95 ~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~~~~~~~~~~~~~~G~~~~l 174 (272)
+.++++|++|++++.++.+.++.|+++.+++ +||+++. .++.++++|+.++..++. + .+..+..|+++++
T Consensus 85 ~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~~~--~~~~i~~~Gv~li~~~~~-~---~~~~~~~G~ll~l 154 (293)
T PRK10532 85 NYLFYLSIQTVPLGIAVALEFTGPLAVALFS----SRRPVDF--VWVVLAVLGLWFLLPLGQ-D---VSHVDLTGAALAL 154 (293)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHHHh----cCChHHH--HHHHHHHHHHheeeecCC-C---cccCChHHHHHHH
Confidence 8888999999999999999999999998887 3666554 456778999998874432 1 1223457999999
Q ss_pred HHHHHHHHHHHHHhhhccCCChHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHhhHHHHH
Q 024137 175 AGTIFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILELKSLESVEWSTNILLGFAGYAASSFMFYTLAPFVL 254 (272)
Q Consensus 175 ~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~g~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~ 254 (272)
+++++||.|.+..||..++.++... .+....+++++. |....+.+. ...++.......+++. .+....|.++...+
T Consensus 155 ~aa~~~a~~~v~~r~~~~~~~~~~~-~~~~~~~~~~l~-~~~~~~~~~-~~~~~~~~~~~l~lgv-~~t~~~~~l~~~~~ 230 (293)
T PRK10532 155 GAGACWAIYILSGQRAGAEHGPATV-AIGSLIAALIFV-PIGALQAGE-ALWHWSILPLGLAVAI-LSTALPYSLEMIAL 230 (293)
T ss_pred HHHHHHHHHHHHHHHHhccCCchHH-HHHHHHHHHHHH-HHHHHccCc-ccCCHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 9999999999999998777787766 455566666664 544443221 1112222222233333 45566777888888
Q ss_pred Hhhh-hhhhhhhhhc
Q 024137 255 KVIL-LFANCYLLIR 268 (272)
Q Consensus 255 k~~~-~~~~~~~~~~ 268 (272)
|+.+ ..+++....|
T Consensus 231 ~~~~a~~as~~~~l~ 245 (293)
T PRK10532 231 TRLPTRTFGTLMSME 245 (293)
T ss_pred HhcChhHHHHHHHhH
Confidence 8866 4555554444
No 11
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.85 E-value=1.3e-18 Score=154.16 Aligned_cols=172 Identities=14% Similarity=0.116 Sum_probs=139.7
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHH---Hhcc-hhhhhHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHH
Q 024137 37 SFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLL---YRRQ-RLRVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTL 112 (272)
Q Consensus 37 ~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~---~~~~-~~~~~~~~~~~~g~~~~~~~~l~~~al~~~~a~~a~~ 112 (272)
.+..|.+.+ ....|..+++.|+..+.+.+.+... ++++ ..++++++.+..|+++...+.+.+.|+++++++++++
T Consensus 18 ~~~NK~~l~-~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~~l 96 (302)
T TIGR00817 18 NIYNKKLLN-VFPYPYFKTLISLAVGSLYCLLSWSSGLPKRLKISSALLKLLLPVAIVHTIGHVTSNVSLSKVAVSFTHT 96 (302)
T ss_pred HHHHHHHHh-hCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 445565553 3477999999999988776655421 1122 2345688889999987555888999999999999999
Q ss_pred hhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhccccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhhhcc
Q 024137 113 LDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLLGDVLVIAGTIFFATSNVGEEFFVK 192 (272)
Q Consensus 113 l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~ 192 (272)
+.++.|+++.+++++++|||++++++.|++++++|+.+....+ .+.+..|++++++|+++|++|.++.||..+
T Consensus 97 i~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~-------~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~ 169 (302)
T TIGR00817 97 IKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTE-------LSFNWAGFLSAMISNITFVSRNIFSKKAMT 169 (302)
T ss_pred HHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCc-------ccccHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999998764222 223467999999999999999999999877
Q ss_pred --CCChHHHHHHHHHHHHHHHHHHHHH
Q 024137 193 --KKDRVEVVCMIGVYGLLVSAVQLSI 217 (272)
Q Consensus 193 --~~~~~~~~~~~~~~g~i~~~i~~~~ 217 (272)
+.|+...+.++...+.+.++ |...
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~l~-p~~~ 195 (302)
T TIGR00817 170 IKSLDKTNLYAYISIMSLFLLS-PPAF 195 (302)
T ss_pred cCCCCcccHHHHHHHHHHHHHH-HHHH
Confidence 78999999999999988886 5543
No 12
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.81 E-value=2.3e-17 Score=148.95 Aligned_cols=171 Identities=15% Similarity=0.121 Sum_probs=135.4
Q ss_pred HHHHHHHhhcCCCC-hHHHHHHHHHHHHHHHHHHHHH---hcch---hhhhHHHHHHHHHHHHHHHHHHHHHhhcchhhH
Q 024137 37 SFTSSLIADLGVDA-PVTQSAFAYFSLALVYGGVLLY---RRQR---LRVAWYWYLLLGFVDVQGNFLVNKAYQFSSITS 109 (272)
Q Consensus 37 ~~~~~~l~~~~~~~-p~~~~~~R~~~a~~~l~~~~~~---~~~~---~~~~~~~~~~~g~~~~~~~~l~~~al~~~~a~~ 109 (272)
....|.+. +..| |.+++.+|++++.++...+... ++++ .+++++..+..|+++...+...+.|+++++++.
T Consensus 65 ~~~nK~vl--~~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~llp~gl~~~~~~~~~~~sl~~~svs~ 142 (350)
T PTZ00343 65 VVDNKLAL--NMLPLPWTISSLQLFVGWLFALLYWATGFRKIPRIKSLKLFLKNFLPQGLCHLFVHFGAVISMGLGAVSF 142 (350)
T ss_pred HHHHHHHH--HhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHH
Confidence 34445554 3567 9999999999987765544321 1122 234577889999998877666779999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhccccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhh
Q 024137 110 VTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLLGDVLVIAGTIFFATSNVGEEF 189 (272)
Q Consensus 110 a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~ 189 (272)
++++.++.|+++++++++++|||++++++.++++++.|+.+....+ .+.+..|++++++|+++||+++++.|+
T Consensus 143 ~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~-------~~~~~~G~~~~l~s~~~~a~~~i~~k~ 215 (350)
T PTZ00343 143 THVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKE-------LHFTWLAFWCAMLSNLGSSLRSIFAKK 215 (350)
T ss_pred HHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheeccc-------chhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999987543 123468999999999999999999999
Q ss_pred hccC-------CChHHHHHHHHHHHHHHHHHHHHH
Q 024137 190 FVKK-------KDRVEVVCMIGVYGLLVSAVQLSI 217 (272)
Q Consensus 190 ~~~~-------~~~~~~~~~~~~~g~i~~~i~~~~ 217 (272)
..++ .++.....++...+.++++ |...
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-p~~~ 249 (350)
T PTZ00343 216 TMKNKSEIGENLTASNIYMLLTLIASLISL-PLVL 249 (350)
T ss_pred HhcccccccccCCHHHHHHHHHHHHHHHHH-HHHH
Confidence 8764 3455566666778888876 6544
No 13
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.80 E-value=3.2e-17 Score=143.84 Aligned_cols=164 Identities=17% Similarity=0.124 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHh--c---chhhhhHHHHHHHHHHHHHH-HH
Q 024137 23 LFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYR--R---QRLRVAWYWYLLLGFVDVQG-NF 96 (272)
Q Consensus 23 ~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~--~---~~~~~~~~~~~~~g~~~~~~-~~ 96 (272)
.++..+++++++.....+|+..++ .++. .+++.....+++.++...+ + +..+++++.....+.++... +.
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~--~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADK--EPDF--LWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFL 78 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCc--hhHH--HHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHH
Confidence 456778888999999998877643 3343 3667766677777765543 1 22233344444555545444 88
Q ss_pred HHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhccccCCCCCCCCCCchhHHHHHHHH
Q 024137 97 LVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLLGDVLVIAG 176 (272)
Q Consensus 97 l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~~~~~~~~~~~~~~G~~~~l~a 176 (272)
+++.|+++.++++++.+.++.|+++.+++++++|||+++++|+|+.+++.|+.++..++. +..+..|+.+++++
T Consensus 79 ~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~------~~~~~~g~~~~l~a 152 (281)
T TIGR03340 79 GLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRF------AQHRRKAYAWALAA 152 (281)
T ss_pred HHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccc------cccchhHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999875441 12334788899999
Q ss_pred HHHHHHHHHHHhhhccCCCh
Q 024137 177 TIFFATSNVGEEFFVKKKDR 196 (272)
Q Consensus 177 ~~~~a~~~v~~k~~~~~~~~ 196 (272)
+++|+.|.+..|+..++.++
T Consensus 153 al~~a~~~i~~k~~~~~~~~ 172 (281)
T TIGR03340 153 ALGTAIYSLSDKAAALGVPA 172 (281)
T ss_pred HHHHHHhhhhccccccchhc
Confidence 99999999999986544444
No 14
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.72 E-value=1e-14 Score=127.27 Aligned_cols=181 Identities=24% Similarity=0.307 Sum_probs=137.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhc---chhhhhHHHHHHHHHHHHHH
Q 024137 18 RTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRR---QRLRVAWYWYLLLGFVDVQG 94 (272)
Q Consensus 18 ~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~---~~~~~~~~~~~~~g~~~~~~ 94 (272)
+..++.....+.++.|.......+...+. ..++....+.|...+.+...+...+++ ++.+++++...+.+.+....
T Consensus 4 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (292)
T COG0697 4 ALLLGLLALLLWGLLWGLSFIALKLAVES-LDPFLFAAALRFLIAALLLLPLLLLEPRGLRPALRPWLLLLLLALLGLAL 82 (292)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCChHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHH
Confidence 34456667777777777777777777643 466677777799888887544433332 11122234566666666666
Q ss_pred -HHHHHHHhhcchhhHHHHhhhhhHHHHHHHHH-HHhcccchhhHHHHHHHHHhhhhhhccccCCCCCCCCCC-chhHHH
Q 024137 95 -NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTW-LFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSR-PLLGDV 171 (272)
Q Consensus 95 -~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~-~~~~er~s~~~~~gi~l~~~Gv~ll~~~~~~~~~~~~~~-~~~G~~ 171 (272)
+.+++.+++++++++++.+.++.|+++.+++. +++|||++++++.++.+++.|+.++..++.. +.. +..|+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~-----~~~~~~~g~~ 157 (292)
T COG0697 83 PFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGG-----GGILSLLGLL 157 (292)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCc-----chhHHHHHHH
Confidence 88899999999999999999999999999997 6679999999999999999999999877631 111 469999
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCChHHHHH-HHHH
Q 024137 172 LVIAGTIFFATSNVGEEFFVKKKDRVEVVC-MIGV 205 (272)
Q Consensus 172 ~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~-~~~~ 205 (272)
+++++++++|++.+..|+.. +.++..... ++..
T Consensus 158 ~~l~a~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~ 191 (292)
T COG0697 158 LALAAALLWALYTALVKRLS-RLGPVTLALLLQLL 191 (292)
T ss_pred HHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHH
Confidence 99999999999999999987 666666665 4444
No 15
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.61 E-value=4.1e-14 Score=124.06 Aligned_cols=257 Identities=21% Similarity=0.206 Sum_probs=178.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCChHHHHHHHHHHHHHHHHHHH----------HHh----------
Q 024137 15 VTLRTLYLLFLGQLVSFTLALMSFTSSLIADL-GVDAPVTQSAFAYFSLALVYGGVL----------LYR---------- 73 (272)
Q Consensus 15 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~-~~~~p~~~~~~R~~~a~~~l~~~~----------~~~---------- 73 (272)
+.-+...|+++..+..++|-.++...+.+... ....|+..++..-..-.+.+.++. .|.
T Consensus 8 ~~~r~~lGl~lL~~V~viWV~SSeLT~~if~~~~f~kPFfiTY~~ts~fivYL~~~~~~d~~~~~~~~R~~~~~~~~~~e 87 (416)
T KOG2765|consen 8 KRWRWTLGLVLLLLVVVIWVASSELTQSIFEDYNFRKPFFITYLKTSLFIVYLPPFILIDAPWRILETRSKRSNHAIMEE 87 (416)
T ss_pred hhhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhcccCCceeEeeecccceehhhhhhhhhcchhhhhhhhccccchhhhhh
Confidence 34467889999999999999999998888753 344688887766544444444322 110
Q ss_pred ----------------------------------c------------------chhh------------hhHHHHHHHHH
Q 024137 74 ----------------------------------R------------------QRLR------------VAWYWYLLLGF 89 (272)
Q Consensus 74 ----------------------------------~------------------~~~~------------~~~~~~~~~g~ 89 (272)
. .+.+ +..+..+..+.
T Consensus 88 ~d~e~y~~~~~~~~~~~~~l~~~~~~~~~~~~l~s~~~~~~~s~~~e~~~~~~~~~rs~l~~~~~~t~~~~ak~sl~fc~ 167 (416)
T KOG2765|consen 88 ADAEGYFSACTTDKTMESGLSGPESVPDKSPLLGSGEEEKPESTNLEVREKANTKKRSNLKERGKLTATQTAKLSLFFCP 167 (416)
T ss_pred hhhhccccccccccccccccCCceeeeccccccccccccCCCCccccccccCCcccccchhhhhhhHHHHHHHHHHHHHH
Confidence 0 0001 00223456666
Q ss_pred HHHHHHHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhccccCCC-CCCCCCCchh
Q 024137 90 VDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGG-DGGGGSRPLL 168 (272)
Q Consensus 90 ~~~~~~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~~~~-~~~~~~~~~~ 168 (272)
+.+.++++++.|+.+++++...++.++.-+|+..++.++..||.++.+.+++.+.+.|++++...+... ++.....+..
T Consensus 168 lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~~a~~~ll 247 (416)
T KOG2765|consen 168 LWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDLPASRPLL 247 (416)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccccCCccchhH
Confidence 777889999999999999999999999999999999999999999999999999999999999876411 1122345689
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCC----ChHHHHHHHHHHHHHHHHHHHHHhh---ccccccccchhHHHHHHHHHHH
Q 024137 169 GDVLVIAGTIFFATSNVGEEFFVKKK----DRVEVVCMIGVYGLLVSAVQLSILE---LKSLESVEWSTNILLGFAGYAA 241 (272)
Q Consensus 169 G~~~~l~a~~~~a~~~v~~k~~~~~~----~~~~~~~~~~~~g~i~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 241 (272)
|+++++++++.||+|.+..||...+. |.-....+..++..++..++..+.+ .+..+..+-.......+.+...
T Consensus 248 G~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~~lig 327 (416)
T KOG2765|consen 248 GNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFNNLIG 327 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHhhHHH
Confidence 99999999999999999999875554 4444555555555555553333332 2222211111111122222223
Q ss_pred HHHHHHhhHHHHHHhhhhhhhhhhhhccCC
Q 024137 242 SSFMFYTLAPFVLKVILLFANCYLLIRFPL 271 (272)
Q Consensus 242 ~~~~~y~~~~~~~k~~~~~~~~~~~~~~~~ 271 (272)
...--|.+.-.+.-+++.+++++|.+|.||
T Consensus 328 tvvSDylW~~a~~lTs~Lv~TlgmSltIPL 357 (416)
T KOG2765|consen 328 TVVSDYLWAKAVLLTSPLVVTLGMSLTIPL 357 (416)
T ss_pred HHHHHHHHHHHHHhccchhheeeeeEeeeH
Confidence 344567777778888889999999999997
No 16
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.59 E-value=1.1e-12 Score=109.56 Aligned_cols=230 Identities=14% Similarity=0.041 Sum_probs=168.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhc-chhhhhHHHHHHHHHHHHHHHHHHHH
Q 024137 22 LLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRR-QRLRVAWYWYLLLGFVDVQGNFLVNK 100 (272)
Q Consensus 22 ~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~l~~~ 100 (272)
.++......+......-+.|.+. +..+|.-.+.+|..++.+++.++++..+ +..+++|+.....|......|.+||.
T Consensus 13 p~~~ll~amvsiq~Gas~Ak~LF--P~vG~~g~t~lRl~~aaLIll~l~RPwr~r~~~~~~~~~~~yGvsLg~MNl~FY~ 90 (292)
T COG5006 13 PILALLVAMVSIQSGASFAKSLF--PLVGAAGVTALRLAIAALILLALFRPWRRRLSKPQRLALLAYGVSLGGMNLLFYL 90 (292)
T ss_pred cHHHHHHHHHHHHhhHHHHHHHc--cccChhhHHHHHHHHHHHHHHHHhhHHHhccChhhhHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666777775 5788999999999999999988776433 33466788899999877777999999
Q ss_pred HhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhccccCCCCCCCCCCchhHHHHHHHHHHHH
Q 024137 101 AYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLLGDVLVIAGTIFF 180 (272)
Q Consensus 101 al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~~~~~~~~~~~~~~G~~~~l~a~~~~ 180 (272)
+++.+|-+.+..+.++-|+.+.+++. + +.++.+.+.+++.|+.++.-.+. +....+..|..++++++.||
T Consensus 91 si~riPlGiAVAiEF~GPL~vA~~~s----R--r~~d~vwvaLAvlGi~lL~p~~~----~~~~lDp~Gv~~Al~AG~~W 160 (292)
T COG5006 91 SIERIPLGIAVAIEFTGPLAVALLSS----R--RLRDFVWVALAVLGIWLLLPLGQ----SVWSLDPVGVALALGAGACW 160 (292)
T ss_pred HHHhccchhhhhhhhccHHHHHHHhc----c--chhhHHHHHHHHHHHHhheeccC----CcCcCCHHHHHHHHHHhHHH
Confidence 99999999999999999999887765 3 34556667788889888865442 23456689999999999999
Q ss_pred HHHHHHHhhhccCCChHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHH-HHHHHHHHHhhHHHHHHhhh-
Q 024137 181 ATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILELKSLESVEWSTNILLGFAG-YAASSFMFYTLAPFVLKVIL- 258 (272)
Q Consensus 181 a~~~v~~k~~~~~~~~~~~~~~~~~~g~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~y~~~~~~~k~~~- 258 (272)
+.|.+..||..+..+..+.....+.+++++.+ |+......+ . -+++..+..-++ ..++...-|.+-...+++-+
T Consensus 161 a~YIv~G~r~g~~~~g~~g~a~gm~vAaviv~-Pig~~~ag~-~--l~~p~ll~laLgvavlSSalPYsLEmiAL~rlp~ 236 (292)
T COG5006 161 ALYIVLGQRAGRAEHGTAGVAVGMLVAALIVL-PIGAAQAGP-A--LFSPSLLPLALGVAVLSSALPYSLEMIALRRLPA 236 (292)
T ss_pred HHHHHHcchhcccCCCchHHHHHHHHHHHHHh-hhhhhhcch-h--hcChHHHHHHHHHHHHhcccchHHHHHHHhhCCh
Confidence 99999999987677888888888888888886 766533211 1 123333222222 23566777888888888765
Q ss_pred hhhhhhhhh
Q 024137 259 LFANCYLLI 267 (272)
Q Consensus 259 ~~~~~~~~~ 267 (272)
-.+.+-+.+
T Consensus 237 ~~F~~LlSL 245 (292)
T COG5006 237 RTFGTLLSL 245 (292)
T ss_pred hHHHHHHHh
Confidence 244444433
No 17
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.57 E-value=2.6e-12 Score=109.81 Aligned_cols=187 Identities=17% Similarity=0.071 Sum_probs=143.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHH--Hhcchh---hhhHHHHH--HHHH
Q 024137 17 LRTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLL--YRRQRL---RVAWYWYL--LLGF 89 (272)
Q Consensus 17 ~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~--~~~~~~---~~~~~~~~--~~g~ 89 (272)
++..+|++.+..+-++|+..-...+.+. ..++..+...|.+-+.+.+...+. ++++.. .++.+... ..+.
T Consensus 3 ~~~~~Gil~~l~Ay~lwG~lp~y~kll~---~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a 79 (293)
T COG2962 3 KDSRKGILLALLAYLLWGLLPLYFKLLE---PLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTA 79 (293)
T ss_pred CcccchhHHHHHHHHHHHHHHHHHHHHc---cCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHH
Confidence 3445699999999999999998888886 578889999999777666554433 232221 22222232 2333
Q ss_pred HHHHH-HHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhccccCCCCCCCCCCchh
Q 024137 90 VDVQG-NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLL 168 (272)
Q Consensus 90 ~~~~~-~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~~~~~~~~~~~~~~ 168 (272)
..++. ...|.+|.++..+-++++=++.+|++..+++.+++|||+++.||++++++.+||....+.. ++.+
T Consensus 80 ~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~-------g~lp-- 150 (293)
T COG2962 80 LLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLL-------GSLP-- 150 (293)
T ss_pred HHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc-------CCCc--
Confidence 34444 4567899999999999999999999999999999999999999999999999999998866 3444
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 024137 169 GDVLVIAGTIFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILE 219 (272)
Q Consensus 169 G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~g~i~~~i~~~~~~ 219 (272)
.-++.=+++|++|..+.|+. ++|+.+.....++.-.++.++.....+
T Consensus 151 --wval~la~sf~~Ygl~RK~~--~v~a~~g~~lE~l~l~p~al~yl~~l~ 197 (293)
T COG2962 151 --WVALALALSFGLYGLLRKKL--KVDALTGLTLETLLLLPVALIYLLFLA 197 (293)
T ss_pred --HHHHHHHHHHHHHHHHHHhc--CCchHHhHHHHHHHHhHHHHHHHHHHh
Confidence 44555669999999998884 789999988888888888764444433
No 18
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.56 E-value=3.5e-12 Score=113.11 Aligned_cols=183 Identities=21% Similarity=0.259 Sum_probs=146.5
Q ss_pred HHHHHHHHHhhcCCCC--hHHHHHHHHHHHHHHHHHHHHHhc--chhhhhHHHHHHHHHHHHHHHHHHHHHhhcchhhHH
Q 024137 35 LMSFTSSLIADLGVDA--PVTQSAFAYFSLALVYGGVLLYRR--QRLRVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSV 110 (272)
Q Consensus 35 ~~~~~~~~l~~~~~~~--p~~~~~~R~~~a~~~l~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~l~~~al~~~~a~~a 110 (272)
..+....++.+.+... |..+++..+....+...+.....+ ++.+.++++++..+++......+-+.|++|+|.+.-
T Consensus 14 ~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~i~~p~~ 93 (303)
T PF08449_consen 14 SYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFPKSRKIPLKKYAILSFLFFLASVLSNAALKYISYPTQ 93 (303)
T ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccCCCcChHHHHHHHHHHHHHHHHHHHHHHHhCChHHH
Confidence 3456666666555555 999999998887777666554433 334556788999999888889999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhccccCCCCCCCCCC---chhHHHHHHHHHHHHHHHHHHH
Q 024137 111 TLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSR---PLLGDVLVIAGTIFFATSNVGE 187 (272)
Q Consensus 111 ~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~~~~~~~~~~~---~~~G~~~~l~a~~~~a~~~v~~ 187 (272)
.+..++.|+++++++.+++|||.+++|+.++.+..+|+++....+..++...+.. ...|+.+.+++.++.|+..+++
T Consensus 94 ~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~sl~~~a~~~~~q 173 (303)
T PF08449_consen 94 IVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLLLSLLLDAFTGVYQ 173 (303)
T ss_pred HHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988764222211111 1349999999999999999999
Q ss_pred hhhccC--CChHHHHHHHHHHHHHHHHHHHHH
Q 024137 188 EFFVKK--KDRVEVVCMIGVYGLLVSAVQLSI 217 (272)
Q Consensus 188 k~~~~~--~~~~~~~~~~~~~g~i~~~i~~~~ 217 (272)
||..++ .++.+.+.+...++.+...+....
T Consensus 174 e~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~ 205 (303)
T PF08449_consen 174 EKLFKKYGKSPWELMFYTNLFSLPFLLILLFL 205 (303)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 998664 678899999999998888644444
No 19
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.54 E-value=7.5e-16 Score=129.24 Aligned_cols=195 Identities=19% Similarity=0.333 Sum_probs=151.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhcchh---hhhHHHHHHHHHHHHHH
Q 024137 18 RTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQRL---RVAWYWYLLLGFVDVQG 94 (272)
Q Consensus 18 ~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~---~~~~~~~~~~g~~~~~~ 94 (272)
+..+|+++..+. ..+-.+.+.+++.. +.+|....-.|.+.-.++-.|....+++.. +.+.+++++.|+.+..+
T Consensus 35 ~p~~gl~l~~vs-~ff~~~~vv~t~~~---e~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R~~LiLRg~mG~tg 110 (346)
T KOG4510|consen 35 KPNLGLLLLTVS-YFFNSCMVVSTKVL---ENDPMELASFRLLVRMLITYPCLIYYMQPVIGPEGKRKWLILRGFMGFTG 110 (346)
T ss_pred CCccCceehhhH-HHHhhHHHhhhhhh---ccChhHhhhhhhhhehhhhheEEEEEeeeeecCCCcEEEEEeehhhhhhH
Confidence 446677777666 56666666666665 567888888886555555444443343322 12234577889989988
Q ss_pred HHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhccccC--CCCCC-----CCCCch
Q 024137 95 NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDA--GGDGG-----GGSRPL 167 (272)
Q Consensus 95 ~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~~--~~~~~-----~~~~~~ 167 (272)
-.+.++|++|.+.++++++..+.|+++.++++.++|||.++.+.++..+.+.|++++..+.. ++++. ..+.+.
T Consensus 111 vmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~~~~~~ 190 (346)
T KOG4510|consen 111 VMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQVEYDI 190 (346)
T ss_pred HHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCccccccccccccC
Confidence 88999999999999999999999999999999999999999999999999999999988764 22211 113457
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhccCCChHHHHHHHHHHHHHHHHHHHH
Q 024137 168 LGDVLVIAGTIFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLS 216 (272)
Q Consensus 168 ~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~g~i~~~i~~~ 216 (272)
.|...++.+.+..|-..++.|+..|+.+......+....+.+..++...
T Consensus 191 ~gt~aai~s~lf~asvyIilR~iGk~~h~~msvsyf~~i~lV~s~I~~~ 239 (346)
T KOG4510|consen 191 PGTVAAISSVLFGASVYIILRYIGKNAHAIMSVSYFSLITLVVSLIGCA 239 (346)
T ss_pred CchHHHHHhHhhhhhHHHHHHHhhccccEEEEehHHHHHHHHHHHHHHh
Confidence 8999999999999999999999989999888888888888888764443
No 20
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.53 E-value=4.8e-12 Score=111.53 Aligned_cols=184 Identities=15% Similarity=0.089 Sum_probs=133.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHH-hcchh--hhhHHHHHHHHHHHHHHHHHH
Q 024137 22 LLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLY-RRQRL--RVAWYWYLLLGFVDVQGNFLV 98 (272)
Q Consensus 22 ~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~~-~~~~~--~~~~~~~~~~g~~~~~~~~l~ 98 (272)
++++..+.+++|++.+...|+.. +.++.+.. |..++.+++..+... +.++. ++.+..-.+.|......|.++
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~---g~~~~~~~--~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~l~G~~w~ig~~~~ 76 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG---GGPYSQTL--GTTFGALILSIAIAIFVLPEFWALSIFLVGLLSGAFWALGQINQ 76 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC---CCHHHHHH--HHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHhhhhhH
Confidence 46788889999999999999875 34555543 776666665544332 22221 122333444455455559999
Q ss_pred HHHhhcchhhHHHHhhh-hhHHHHHHHHHHHhcccchhhH----HHHHHHHHhhhhhhccccCCCCCCCC-CCchhHHHH
Q 024137 99 NKAYQFSSITSVTLLDC-CTIAWAIVLTWLFLGTRYSLWQ----LLGAALCVLGLGLVLLSDAGGDGGGG-SRPLLGDVL 172 (272)
Q Consensus 99 ~~al~~~~a~~a~~l~~-~~Pv~~~lls~~~~~er~s~~~----~~gi~l~~~Gv~ll~~~~~~~~~~~~-~~~~~G~~~ 172 (272)
+.|.++++++.+..+.+ +.++++.+.+.+++|||.++++ ++|+.++++|+.++...+.++....+ .+...|..+
T Consensus 77 ~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~~~~~~~~~Gi~~ 156 (290)
T TIGR00776 77 FKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGIKSEFNFKKGILL 156 (290)
T ss_pred HHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccccccccccchhhHHHH
Confidence 99999999999999887 8999999999999999999999 99999999999998765421110000 223689999
Q ss_pred HHHHHHHHHHHHHHHhhhccCCChHHH---HHHHHHHHHHHHH
Q 024137 173 VIAGTIFFATSNVGEEFFVKKKDRVEV---VCMIGVYGLLVSA 212 (272)
Q Consensus 173 ~l~a~~~~a~~~v~~k~~~~~~~~~~~---~~~~~~~g~i~~~ 212 (272)
+++|+++|+.|.+..|+. +.||.+. ..+....++.+..
T Consensus 157 ~l~sg~~y~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~ 197 (290)
T TIGR00776 157 LLMSTIGYLVYVVVAKAF--GVDGLSVLLPQAIGMVIGGIIFN 197 (290)
T ss_pred HHHHHHHHHHHHHHHHHc--CCCcceehhHHHHHHHHHHHHHH
Confidence 999999999999999986 5788877 4444444444443
No 21
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.46 E-value=1.1e-12 Score=98.59 Aligned_cols=129 Identities=22% Similarity=0.262 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhcch------hhhhHHHHHHHHHHHHHHH
Q 024137 22 LLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQR------LRVAWYWYLLLGFVDVQGN 95 (272)
Q Consensus 22 ~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~------~~~~~~~~~~~g~~~~~~~ 95 (272)
-.+++.+.|++++...++.|.-- ++.+|-+.++.|-.+....+..++...++. .++.|....+.|+.+....
T Consensus 4 ~~~~ALLsA~fa~L~~iF~KIGl--~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glsw 81 (140)
T COG2510 4 AIIYALLSALFAGLTPIFAKIGL--EGVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSW 81 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHH
Confidence 46788899999888888888765 467899999999988887777766654432 2344666667775555558
Q ss_pred HHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhc
Q 024137 96 FLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVL 152 (272)
Q Consensus 96 ~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~ 152 (272)
.+||.|++..+++.++.+..++|+++.+++++++|||+|.++|+|+.+..+|++++.
T Consensus 82 l~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 82 LLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 889999999999999999999999999999999999999999999999999998875
No 22
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.46 E-value=2.1e-11 Score=104.63 Aligned_cols=177 Identities=20% Similarity=0.173 Sum_probs=129.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhccccCC
Q 024137 78 RVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAG 157 (272)
Q Consensus 78 ~~~~~~~~~~g~~~~~~~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~~~ 157 (272)
+++..++.+.+++....|.+.+.++++.+++...++..+..+++++++.+++|+|++++||+++.+.+.|+.++-.++..
T Consensus 14 ~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~ 93 (244)
T PF04142_consen 14 PKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQ 93 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcc
Confidence 34556788889888888999999999999999999999999999999999999999999999999999999998776542
Q ss_pred CCCC---C-------CCCchhHHHHHHHHHHHHHHHHHHHhhhccCC--ChHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 024137 158 GDGG---G-------GSRPLLGDVLVIAGTIFFATSNVGEEFFVKKK--DRVEVVCMIGVYGLLVSAVQLSILELKSLES 225 (272)
Q Consensus 158 ~~~~---~-------~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~--~~~~~~~~~~~~g~i~~~i~~~~~~~~~~~~ 225 (272)
+++. . +.+...|..+.++++++-++..++.||..|+. +.+..+.....+|.++.++.....+++....
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~ 173 (244)
T PF04142_consen 94 SSDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISE 173 (244)
T ss_pred ccccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 2111 0 12347999999999999999999999998884 4555566667777777764433333322111
Q ss_pred ----ccchhHHHHHHHHHHHHHHHHHhhHHHHHHhhh
Q 024137 226 ----VEWSTNILLGFAGYAASSFMFYTLAPFVLKVIL 258 (272)
Q Consensus 226 ----~~~~~~~~~~~~~~~~~~~~~y~~~~~~~k~~~ 258 (272)
..++...+..... ......+...++||.+
T Consensus 174 ~g~f~G~~~~~~~~i~~----~a~gGllva~v~Kyad 206 (244)
T PF04142_consen 174 SGFFHGYSWWVWIVIFL----QAIGGLLVAFVLKYAD 206 (244)
T ss_pred CCchhhcchHHHHHHHH----HHHhhHHHHHHHHHHh
Confidence 1234433333222 2223355666788876
No 23
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.39 E-value=2.8e-12 Score=97.91 Aligned_cols=118 Identities=26% Similarity=0.470 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHH--hcc--h-hhhhHHHHHHHHHHHHHH-HHHHHHHhhcc
Q 024137 32 TLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLY--RRQ--R-LRVAWYWYLLLGFVDVQG-NFLVNKAYQFS 105 (272)
Q Consensus 32 ~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~~--~~~--~-~~~~~~~~~~~g~~~~~~-~~l~~~al~~~ 105 (272)
+|+......|+..+ +.||....++|+..+.+ +.+.... +++ . ..+++......|.+.... +.++++|++++
T Consensus 2 ~~a~~~~~~k~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 78 (126)
T PF00892_consen 2 SWAIYSVFSKKLLK--KISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYI 78 (126)
T ss_pred eeeeHHHHHHHHhc--cCCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhc
Confidence 45666777777774 48899999999999886 3333322 221 1 123456677777775444 88999999999
Q ss_pred hhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhc
Q 024137 106 SITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVL 152 (272)
Q Consensus 106 ~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~ 152 (272)
+++.++.+.+++|+++.+++++++|||+++++++|+.+++.|+.++.
T Consensus 79 ~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 79 SASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998864
No 24
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=99.34 E-value=2.7e-11 Score=91.83 Aligned_cols=100 Identities=28% Similarity=0.469 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHHHHHhcch------h-hhhHHHHHHHHHHHHHH-HHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHH
Q 024137 56 AFAYFSLALVYGGVLLYRRQR------L-RVAWYWYLLLGFVDVQG-NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWL 127 (272)
Q Consensus 56 ~~R~~~a~~~l~~~~~~~~~~------~-~~~~~~~~~~g~~~~~~-~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~ 127 (272)
.+|+..+.+++..+...+++. . ++++.+....|.++... +.++++|+++.+ +.++.+.++.|+++.+++++
T Consensus 2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~ 80 (113)
T PF13536_consen 2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL 80 (113)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence 468888888777765543321 1 23355666778877745 888999999999 58889999999999999999
Q ss_pred HhcccchhhHHHHHHHHHhhhhhhccccC
Q 024137 128 FLGTRYSLWQLLGAALCVLGLGLVLLSDA 156 (272)
Q Consensus 128 ~~~er~s~~~~~gi~l~~~Gv~ll~~~~~ 156 (272)
++|||++++++.+++++++|++++..++.
T Consensus 81 ~~~er~~~~~~~a~~l~~~Gv~li~~~~~ 109 (113)
T PF13536_consen 81 FFKERLSPRRWLAILLILIGVILIAWSDL 109 (113)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence 99999999999999999999999998774
No 25
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.30 E-value=1.4e-10 Score=100.31 Aligned_cols=130 Identities=22% Similarity=0.237 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhcchh---hhhHHHHHHHHHHHHHH-
Q 024137 19 TLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQRL---RVAWYWYLLLGFVDVQG- 94 (272)
Q Consensus 19 ~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~---~~~~~~~~~~g~~~~~~- 94 (272)
..+|..++.+++++++......|+..++.+.++.....+|+..+.+++.+....+++.. .+++......+.++...
T Consensus 126 ~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (260)
T TIGR00950 126 NPAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNPQALSLQWGALLYLGLIGTALA 205 (260)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHH
Confidence 36799999999999999999999987533333445555788888888887765433221 23355566777776555
Q ss_pred HHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhh
Q 024137 95 NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGL 148 (272)
Q Consensus 95 ~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv 148 (272)
+.++++++++.++++++.+.++.|+++.+++++++|||++..+++|..+.+.|+
T Consensus 206 ~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 206 YFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 888999999999999999999999999999999999999999999999999886
No 26
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=99.16 E-value=9.5e-08 Score=84.22 Aligned_cols=232 Identities=15% Similarity=0.081 Sum_probs=151.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcC--CCChHHHHHHHHHHHHHHHHHHHHHh----cchh-----------hhhHHHHH
Q 024137 23 LFLGQLVSFTLALMSFTSSLIADLG--VDAPVTQSAFAYFSLALVYGGVLLYR----RQRL-----------RVAWYWYL 85 (272)
Q Consensus 23 ~~~~~~~a~~~~~~~~~~~~l~~~~--~~~p~~~~~~R~~~a~~~l~~~~~~~----~~~~-----------~~~~~~~~ 85 (272)
.+...+.-+..++.....++-.+.+ ...|.+..+.-=.+-.++....+.++ +++. +++.....
T Consensus 17 ~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk~~ 96 (345)
T KOG2234|consen 17 YLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLKVS 96 (345)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHHHH
Confidence 3333344444555555555554432 35566655543333333333333332 1111 11233456
Q ss_pred HHHHHHHHHHHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhccccCC--CCC--C
Q 024137 86 LLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAG--GDG--G 161 (272)
Q Consensus 86 ~~g~~~~~~~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~~~--~~~--~ 161 (272)
+.+++...-|.+++.++.+.++++..+.+.+..+.|++++.+++|||.++.||.++.+.++|+.++-.+... +.. .
T Consensus 97 vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a~~~~ 176 (345)
T KOG2234|consen 97 VPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGAKSES 176 (345)
T ss_pred HHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCccCCC
Confidence 666666555779999999999999999999999999999999999999999999999999999999733321 111 1
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHhhhccC--CChHHHHHHHHHHHHHHHHHHHHHhhccccc----cccchhHHHHH
Q 024137 162 GGSRPLLGDVLVIAGTIFFATSNVGEEFFVKK--KDRVEVVCMIGVYGLLVSAVQLSILELKSLE----SVEWSTNILLG 235 (272)
Q Consensus 162 ~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~--~~~~~~~~~~~~~g~i~~~i~~~~~~~~~~~----~~~~~~~~~~~ 235 (272)
....+..|....+.++..-++..++.+|.+|+ .+.+--+....++|.+..++-....+.+... ...++...|..
T Consensus 177 ~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gff~G~s~~vw~v 256 (345)
T KOG2234|consen 177 SAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGEAINEYGFFYGYSSIVWLV 256 (345)
T ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhccccccccCCccccccHHHHHH
Confidence 23456899999999999999999999999876 5556666666788888887445444444331 12344545544
Q ss_pred HHHHHHHHHHHHhhHHHHHHhhh
Q 024137 236 FAGYAASSFMFYTLAPFVLKVIL 258 (272)
Q Consensus 236 ~~~~~~~~~~~y~~~~~~~k~~~ 258 (272)
.+.-+ ....+...++||++
T Consensus 257 Vl~~a----~gGLlvs~v~KyAD 275 (345)
T KOG2234|consen 257 VLLNA----VGGLLVSLVMKYAD 275 (345)
T ss_pred HHHHh----ccchhHHHHHHHhH
Confidence 43332 22345566788876
No 27
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=99.05 E-value=5.7e-09 Score=92.05 Aligned_cols=211 Identities=17% Similarity=0.239 Sum_probs=157.2
Q ss_pred HHHHhh-cCCCChHHHHHHHHHHHHHHHHHHHHHh---cch--hhhhHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHh
Q 024137 40 SSLIAD-LGVDAPVTQSAFAYFSLALVYGGVLLYR---RQR--LRVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLL 113 (272)
Q Consensus 40 ~~~l~~-~~~~~p~~~~~~R~~~a~~~l~~~~~~~---~~~--~~~~~~~~~~~g~~~~~~~~l~~~al~~~~a~~a~~l 113 (272)
.|.+.+ .+..-|.+++..++..+.+........+ +++ .+.+++..+.+|+......++-+.|+.+.+++....+
T Consensus 36 nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~~~~~v~~n~Sl~~v~VsF~q~i 115 (316)
T KOG1441|consen 36 NKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVFCISHVLGNVSLSYVPVSFYQTI 115 (316)
T ss_pred eHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHHhcchhhhccchhHHHHH
Confidence 455554 2666788888887766666554432221 122 2245788899998888889999999999999999999
Q ss_pred hhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhccccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhhhcc-
Q 024137 114 DCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLLGDVLVIAGTIFFATSNVGEEFFVK- 192 (272)
Q Consensus 114 ~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~- 192 (272)
..++|+++.++++++.+|+.++..+..+.....|+.+-...+ .+.+..|...++.+.+..+..+++.|+..+
T Consensus 116 Ka~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e-------~~fn~~G~i~a~~s~~~~al~~I~~~~ll~~ 188 (316)
T KOG1441|consen 116 KALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTE-------LSFNLFGFISAMISNLAFALRNILSKKLLTS 188 (316)
T ss_pred HhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeecc-------ccccHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999999999999887655 346789999999999999999999999874
Q ss_pred ---CCChHHHHHHHHHHHHHHHHHHHHHh-hcccc---ccccchhHHHHHHHHHHHHHHHHHhhHHHHHHhhh
Q 024137 193 ---KKDRVEVVCMIGVYGLLVSAVQLSIL-ELKSL---ESVEWSTNILLGFAGYAASSFMFYTLAPFVLKVIL 258 (272)
Q Consensus 193 ---~~~~~~~~~~~~~~g~i~~~i~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~k~~~ 258 (272)
+.|+.....++.-++.+.+++|.... |++.. ....|+........ ..++.+........++.+.+
T Consensus 189 ~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~~~-~sv~~f~~Nls~f~~ig~tS 260 (316)
T KOG1441|consen 189 KGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLILLL-NSVLAFLLNLSAFLVIGRTS 260 (316)
T ss_pred cccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHHHH-HHHHHHHHHHHHHHHHcccC
Confidence 37899999999888888886576544 33333 22123333222221 12556666666667777744
No 28
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.05 E-value=2e-08 Score=88.65 Aligned_cols=133 Identities=16% Similarity=0.014 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhcch--h-hhhHHHHHHHHHHHHHH-H
Q 024137 20 LYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQR--L-RVAWYWYLLLGFVDVQG-N 95 (272)
Q Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~--~-~~~~~~~~~~g~~~~~~-~ 95 (272)
..|.+++..++++++......++..+ ..+|....... ..+.+.+.++....... . ...+...+..|++.... +
T Consensus 147 ~~G~ll~l~aa~~~a~~~v~~r~~~~--~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lgv~~t~~~~ 223 (293)
T PRK10532 147 LTGAALALGAGACWAIYILSGQRAGA--EHGPATVAIGS-LIAALIFVPIGALQAGEALWHWSILPLGLAVAILSTALPY 223 (293)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhc--cCCchHHHHHH-HHHHHHHHHHHHHccCcccCCHHHHHHHHHHHHHHHHHHH
Confidence 45999999999999999999988864 34566665444 44455555554433221 1 12233445777776666 7
Q ss_pred HHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhcccc
Q 024137 96 FLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (272)
Q Consensus 96 ~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~ 155 (272)
.++++++++.++++++.+.+++|+++.+++++++||+++..+++|..+.+.|++......
T Consensus 224 ~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~ 283 (293)
T PRK10532 224 SLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTI 283 (293)
T ss_pred HHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcC
Confidence 789999999999999999999999999999999999999999999999999999886554
No 29
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=99.04 E-value=3.1e-09 Score=86.05 Aligned_cols=105 Identities=18% Similarity=0.314 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhccccCCCCCCCCCC
Q 024137 86 LLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSR 165 (272)
Q Consensus 86 ~~g~~~~~~~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~~~~~~~~~~~ 165 (272)
-..++....++.|..|++..++++++.+.++..-|+.+++++.+|+|+...++++.++++.|+.++.+.|.+ ...
T Consensus 58 PF~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~-----~a~ 132 (290)
T KOG4314|consen 58 PFSIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNE-----HAD 132 (290)
T ss_pred ceEEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccch-----hhh
Confidence 344455566999999999999999999999999999999999999999999999999999999999876632 345
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 024137 166 PLLGDVLVIAGTIFFATSNVGEEFFVKKKD 195 (272)
Q Consensus 166 ~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~ 195 (272)
...|..+++.|+..-|.|.+..|+...+.+
T Consensus 133 e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn 162 (290)
T KOG4314|consen 133 EIIGIACAVGSAFMAALYKVLFKMFIGNAN 162 (290)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 689999999999999999999999876644
No 30
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.00 E-value=1.7e-08 Score=89.04 Aligned_cols=133 Identities=16% Similarity=-0.016 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhcch-----hhhhHHHHHHHHHHHHHH
Q 024137 20 LYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQR-----LRVAWYWYLLLGFVDVQG 94 (272)
Q Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~-----~~~~~~~~~~~g~~~~~~ 94 (272)
..|.+++..++++++......++..+ . ++.....++...+...+.++....... ..+.|......++++...
T Consensus 149 ~~G~l~~l~a~~~~a~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~ 225 (292)
T PRK11272 149 PWGAILILIASASWAFGSVWSSRLPL--P-VGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSII 225 (292)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCC--C-cchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHH
Confidence 35899999999999999998888753 2 244455667777777666654332111 123455666777766655
Q ss_pred -HHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhcccc
Q 024137 95 -NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (272)
Q Consensus 95 -~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~ 155 (272)
+.++++++++.++++++.+.+++|+++++++++++||+++..+++|..+.+.|+.+....+
T Consensus 226 ~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~ 287 (292)
T PRK11272 226 AISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGK 287 (292)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999999999999999999999886544
No 31
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=98.88 E-value=2.1e-07 Score=79.37 Aligned_cols=164 Identities=25% Similarity=0.304 Sum_probs=128.1
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHhcch------------h---hhh--HHHHHHHHHHHHHHHHHHHHHhhcchhhHH
Q 024137 48 VDAPVTQSAFAYFSLALVYGGVLLYRRQR------------L---RVA--WYWYLLLGFVDVQGNFLVNKAYQFSSITSV 110 (272)
Q Consensus 48 ~~~p~~~~~~R~~~a~~~l~~~~~~~~~~------------~---~~~--~~~~~~~g~~~~~~~~l~~~al~~~~a~~a 110 (272)
..+|...+..-++-=.+|+..+...|++. . +.+ ....+..+++.+.+..+.+.++.+++++..
T Consensus 36 fqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p~lfl~Pal~Di~gsslm~vgL~lTsASsf 115 (372)
T KOG3912|consen 36 FQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNPVLFLPPALCDIAGSSLMYVGLNLTSASSF 115 (372)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCCcceecChHHHHHhhhHHHHHHHHHhhHHHH
Confidence 44577776666666567776664433210 0 011 223445788888889999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhccccC---CCCCCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 024137 111 TLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDA---GGDGGGGSRPLLGDVLVIAGTIFFATSNVGE 187 (272)
Q Consensus 111 ~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~~---~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~ 187 (272)
.++.....+|+.+++.-+++++++.+||.|+.....|+..+...|. .++-+.-+....|+++.+.+-+.-|...++.
T Consensus 116 QMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~p~~d~s~iitGdllIiiaqiivaiQ~v~E 195 (372)
T KOG3912|consen 116 QMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVTDPYTDYSSIITGDLLIIIAQIIVAIQMVCE 195 (372)
T ss_pred HHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecccccCCccccccchhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999877653 1221222445799999999999999999999
Q ss_pred hhhccC--CChHHHHHHHHHHHHHHH
Q 024137 188 EFFVKK--KDRVEVVCMIGVYGLLVS 211 (272)
Q Consensus 188 k~~~~~--~~~~~~~~~~~~~g~i~~ 211 (272)
+|..++ ++|.+...++.++|..+.
T Consensus 196 ek~l~~~nV~pl~avg~eGlfG~v~~ 221 (372)
T KOG3912|consen 196 EKQLKKSNVAPLQAVGWEGLFGLVIL 221 (372)
T ss_pred HhhhhhccCCHHHHhhhhhhHHHHHH
Confidence 998765 789999999999995554
No 32
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.85 E-value=1.4e-07 Score=85.52 Aligned_cols=137 Identities=14% Similarity=0.089 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHH-HHhcch---hh--hh--HHHHHHHHH
Q 024137 18 RTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVL-LYRRQR---LR--VA--WYWYLLLGF 89 (272)
Q Consensus 18 ~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~-~~~~~~---~~--~~--~~~~~~~g~ 89 (272)
+...|.++...++++|+......++..+ +..++...+++....+.+...+.. ..++.. +. .+ ..-....++
T Consensus 186 ~~~lG~~l~l~aa~~wa~~~il~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~y~~i 264 (358)
T PLN00411 186 DWLIGGALLTIQGIFVSVSFILQAHIMS-EYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITLITIVTMAI 264 (358)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchHHHHHHHHHH
Confidence 3466999999999999988888887764 233344555555544444333222 222211 11 11 111223333
Q ss_pred HHHHHHHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhcccc
Q 024137 90 VDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (272)
Q Consensus 90 ~~~~~~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~ 155 (272)
.....+.++++++++.+++.+++..++.|++++++++++++|+++..+++|.++.+.|+.+...++
T Consensus 265 ~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~ 330 (358)
T PLN00411 265 ITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGK 330 (358)
T ss_pred HHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhh
Confidence 322237788999999999999999999999999999999999999999999999999999987654
No 33
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.85 E-value=2.5e-07 Score=81.95 Aligned_cols=136 Identities=15% Similarity=0.064 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHHHH-HHhcc--------h-hhhhHHHHHHHH
Q 024137 20 LYLLFLGQLVSFTLALMSFTSSLIADLG-VDAPVTQSAFAYFSLALVYGGVL-LYRRQ--------R-LRVAWYWYLLLG 88 (272)
Q Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~~l~~~~-~~~p~~~~~~R~~~a~~~l~~~~-~~~~~--------~-~~~~~~~~~~~g 88 (272)
..|.+++..++++++.....+++..++. ..+.....++-...+.+.+.... ..++. . ....|...+..|
T Consensus 142 ~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 221 (299)
T PRK11453 142 MLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLA 221 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHH
Confidence 4699999999999999999999876432 22223333333333333222211 11111 1 123355566777
Q ss_pred HHHHHH-HHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhcccc
Q 024137 89 FVDVQG-NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (272)
Q Consensus 89 ~~~~~~-~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~ 155 (272)
++.... +.+++.++++.++++++.+.+++|+++.+++++++||+++..+++|..+.+.|+.+...+.
T Consensus 222 i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~ 289 (299)
T PRK11453 222 FVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGL 289 (299)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcch
Confidence 777666 8889999999999999999999999999999999999999999999999999998876544
No 34
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.84 E-value=1.2e-07 Score=83.73 Aligned_cols=131 Identities=19% Similarity=0.023 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhcc---hh-hhhHHHHHHHHHHHHHHH
Q 024137 20 LYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQ---RL-RVAWYWYLLLGFVDVQGN 95 (272)
Q Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~---~~-~~~~~~~~~~g~~~~~~~ 95 (272)
..|..++..++++++......++..+ +.+|..... ......+.+....... .. ...+......|+.....+
T Consensus 155 ~~G~~~~l~aa~~~A~~~v~~k~~~~--~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~~~ 229 (295)
T PRK11689 155 PLSYGLAFIGAFIWAAYCNVTRKYAR--GKNGITLFF---ILTALALWIKYFLSPQPAMVFSLPAIIKLLLAAAAMGFGY 229 (295)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccC--CCCchhHHH---HHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHHHHHHHH
Confidence 45899999999999999999999863 345655422 2222333222221211 11 123444455554333338
Q ss_pred HHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhcccc
Q 024137 96 FLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (272)
Q Consensus 96 ~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~ 155 (272)
.++++++++.++++++.+.++.|+++.+++++++||+++..+++|..+.+.|+.+....+
T Consensus 230 ~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~ 289 (295)
T PRK11689 230 AAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLAT 289 (295)
T ss_pred HHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhH
Confidence 899999999999999999999999999999999999999999999999999998876544
No 35
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=98.83 E-value=2.8e-06 Score=73.38 Aligned_cols=167 Identities=17% Similarity=0.278 Sum_probs=138.3
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHhcc--hhhhhHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHhhhhhHHHHHHH
Q 024137 47 GVDAPVTQSAFAYFSLALVYGGVLLYRRQ--RLRVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVL 124 (272)
Q Consensus 47 ~~~~p~~~~~~R~~~a~~~l~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~l~~~al~~~~a~~a~~l~~~~Pv~~~ll 124 (272)
...+|.++.+..-+.+.++-...+..+++ ..+++|+.+...++.+.....+.+.|++|++-.+-.+=.++.-+-+++.
T Consensus 47 rF~~~~fL~~~q~l~~~~~s~~~l~~~k~~~~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlm 126 (327)
T KOG1581|consen 47 RFEHSLFLVFCQRLVALLVSYAMLKWWKKELSGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLM 126 (327)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhcccccCCCCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHH
Confidence 45678899998888887777555433222 2345688899999988888999999999999999999999999999999
Q ss_pred HHHHhcccchhhHHHHHHHHHhhhhhhccccCCC-CCC-CCCCchhHHHHHHHHHHHHHHHHHHHhhhccC--CChHHHH
Q 024137 125 TWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGG-DGG-GGSRPLLGDVLVIAGTIFFATSNVGEEFFVKK--KDRVEVV 200 (272)
Q Consensus 125 s~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~~~~-~~~-~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~--~~~~~~~ 200 (272)
..++.|+|.+..+.+...+.-.|+.+....+..| +.. .+.+...|..+.....+.-++.+..+++..++ .++.+++
T Consensus 127 g~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM 206 (327)
T KOG1581|consen 127 GTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSKSGRENSPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMM 206 (327)
T ss_pred HHHHhcCccCcHHHHHHHHHHhheeeEEEecCCCCccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHH
Confidence 9999999999999999999999999987765423 111 22455899999999999999999999998775 7889999
Q ss_pred HHHHHHHHHHHHH
Q 024137 201 CMIGVYGLLVSAV 213 (272)
Q Consensus 201 ~~~~~~g~i~~~i 213 (272)
.+..+++.+....
T Consensus 207 ~~vNLf~~i~~~~ 219 (327)
T KOG1581|consen 207 FGVNLFSAILNGT 219 (327)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998863
No 36
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.76 E-value=1.1e-07 Score=83.52 Aligned_cols=129 Identities=19% Similarity=0.194 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCChH----HHHHHHHHHHHHHHHHHHH-Hhcchh---hhhHHHHHHHHHHHH
Q 024137 21 YLLFLGQLVSFTLALMSFTSSLIADLGVDAPV----TQSAFAYFSLALVYGGVLL-YRRQRL---RVAWYWYLLLGFVDV 92 (272)
Q Consensus 21 ~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~----~~~~~R~~~a~~~l~~~~~-~~~~~~---~~~~~~~~~~g~~~~ 92 (272)
+|..++..++++++......|+..+ +.+|. ....+........+..... ++++.. ...+......+.+..
T Consensus 144 ~g~~~~l~aal~~a~~~i~~k~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 221 (281)
T TIGR03340 144 KAYAWALAAALGTAIYSLSDKAAAL--GVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRSMFPYARQILPSATLGGLMI 221 (281)
T ss_pred hHHHHHHHHHHHHHHhhhhcccccc--chhcccccHHHHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHH
Confidence 4677788888888777776665432 22222 2222233332122222221 122111 112333344444444
Q ss_pred HH-HHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhh
Q 024137 93 QG-NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLV 151 (272)
Q Consensus 93 ~~-~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll 151 (272)
.. +.++++++++.+++.++...++.|+++.+++++++||+++..+++|.++.+.|+.++
T Consensus 222 ~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l~ 281 (281)
T TIGR03340 222 GGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVVL 281 (281)
T ss_pred HHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHhC
Confidence 44 889999999999999999999999999999999999999999999999999998763
No 37
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.75 E-value=1.7e-07 Score=82.63 Aligned_cols=132 Identities=11% Similarity=0.066 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHH---H-HHHHHHHHHHHHhcchhhhhHHHHHHHHHHHH
Q 024137 17 LRTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAY---F-SLALVYGGVLLYRRQRLRVAWYWYLLLGFVDV 92 (272)
Q Consensus 17 ~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~---~-~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~ 92 (272)
.+..+|++++.++++..+......+.. +.+|....+... . .+.++..++ .++++...+..+..++.|++..
T Consensus 148 ~~~~~Gi~~~l~sg~~y~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~Gi~~~ 222 (290)
T TIGR00776 148 FNFKKGILLLLMSTIGYLVYVVVAKAF----GVDGLSVLLPQAIGMVIGGIIFNLGH-ILAKPLKKYAILLNILPGLMWG 222 (290)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHc----CCCcceehhHHHHHHHHHHHHHHHHH-hcccchHHHHHHHHHHHHHHHH
Confidence 345679999999999998888888865 256777644443 3 333333332 1112222233444566888864
Q ss_pred HHHHHHHHHhh-cchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHH----HHHHHHHhhhhhhcc
Q 024137 93 QGNFLVNKAYQ-FSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQL----LGAALCVLGLGLVLL 153 (272)
Q Consensus 93 ~~~~l~~~al~-~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~----~gi~l~~~Gv~ll~~ 153 (272)
..+.+++.+.+ +.+++.++.+.+..|+...+.+.+++||+.+++|+ +|..+.+.|+.++..
T Consensus 223 ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~ 288 (290)
T TIGR00776 223 IGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI 288 (290)
T ss_pred HHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence 44888999999 99999999999999999999999999999999999 999999999988753
No 38
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.74 E-value=2.3e-07 Score=82.18 Aligned_cols=136 Identities=14% Similarity=0.079 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHH-hcch-hhh---------h---HHH-H
Q 024137 20 LYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLY-RRQR-LRV---------A---WYW-Y 84 (272)
Q Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~~-~~~~-~~~---------~---~~~-~ 84 (272)
..|.+++.+++++++......++..++...+|..+..+....+.+.+.|+... +... ... . ... .
T Consensus 144 ~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (302)
T TIGR00817 144 WAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVS 223 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHH
Confidence 45889999999999998888888765335788888888888888877777543 2111 110 0 010 1
Q ss_pred HHHHHHHHHH-HHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhcccc
Q 024137 85 LLLGFVDVQG-NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (272)
Q Consensus 85 ~~~g~~~~~~-~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~ 155 (272)
...+...... +.+.+.+++++++.++++.....|++++++++++++|+++..+++|..+++.|+.+....+
T Consensus 224 ~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k 295 (302)
T TIGR00817 224 LVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVK 295 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHh
Confidence 1222212222 4566789999999999999999999999999999999999999999999999999876544
No 39
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=4.8e-06 Score=72.60 Aligned_cols=196 Identities=15% Similarity=0.065 Sum_probs=140.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCChHHHHHHHHHHHHHHHHHHHHHhc----chh-hhhHHHHHHHH
Q 024137 15 VTLRTLYLLFLGQLVSFTLALMSFTSSLIADL-GVDAPVTQSAFAYFSLALVYGGVLLYRR----QRL-RVAWYWYLLLG 88 (272)
Q Consensus 15 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~-~~~~p~~~~~~R~~~a~~~l~~~~~~~~----~~~-~~~~~~~~~~g 88 (272)
++++..+++.-+..=++.-..+.+..|..-.. +...-+.+..++.+...+.+.. +.+-| ++. ++..++++...
T Consensus 6 ~~~~~~~~l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~-lk~~~lv~~~~l~~~~~kk~~P~~ 84 (314)
T KOG1444|consen 6 GSKKQSSPLLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLV-LKRLGLVNFRPLDLRTAKKWFPVS 84 (314)
T ss_pred cchhhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH-HHHhceeecCCcChHHHHHHccHH
Confidence 34555556666666666666677778777643 4433344445777776665543 33222 122 23355677777
Q ss_pred HHHHHHHHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhccccCCCCCCCCCCchh
Q 024137 89 FVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLL 168 (272)
Q Consensus 89 ~~~~~~~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~~~~~~~~~~~~~~ 168 (272)
++.....+.-..+++|.++....++....|+++++.+..++|.|++++.|.++....+|......+|. ..+..
T Consensus 85 ~lf~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~-------sf~~~ 157 (314)
T KOG1444|consen 85 LLFVGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDL-------SFNLR 157 (314)
T ss_pred HHHHHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccc-------eecch
Confidence 76666666677899999999999999999999999999999999999999999999988877766552 33456
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccC--CChHHHHHHHHHHHHHHHHHHHHHh
Q 024137 169 GDVLVIAGTIFFATSNVGEEFFVKK--KDRVEVVCMIGVYGLLVSAVQLSIL 218 (272)
Q Consensus 169 G~~~~l~a~~~~a~~~v~~k~~~~~--~~~~~~~~~~~~~g~i~~~i~~~~~ 218 (272)
|+.+++...++-+.+.+..|+..+. .+......+..+.......+....+
T Consensus 158 gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ 209 (314)
T KOG1444|consen 158 GYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFIT 209 (314)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHh
Confidence 9999999999999999999987544 4566677777777666665333333
No 40
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.71 E-value=4.4e-07 Score=80.23 Aligned_cols=72 Identities=11% Similarity=0.162 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhcccc
Q 024137 84 YLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (272)
Q Consensus 84 ~~~~g~~~~~~~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~ 155 (272)
....|+.....+.++++++++.+++.++.+.+..|++..++++++++|+++..+++|.++.+.|+.++..++
T Consensus 216 ~~~~g~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~~ 287 (296)
T PRK15430 216 LIAAGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDA 287 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 334454444448999999999999999999999999999999999999999999999999999998887554
No 41
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.67 E-value=1.8e-06 Score=68.41 Aligned_cols=130 Identities=15% Similarity=0.148 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc-----CCCChHHHHHHHHHHHHHHHHHHHHH-hcch-------h-------h-hh
Q 024137 22 LLFLGQLVSFTLALMSFTSSLIADL-----GVDAPVTQSAFAYFSLALVYGGVLLY-RRQR-------L-------R-VA 80 (272)
Q Consensus 22 ~~~~~~~~a~~~~~~~~~~~~l~~~-----~~~~p~~~~~~R~~~a~~~l~~~~~~-~~~~-------~-------~-~~ 80 (272)
|.+++....++.+......+++.+. +..+|..+..+-...+.+.+.+.... ++.. . . +.
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 4567778888888888888887765 58889999888888888877776442 2211 0 1 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhh
Q 024137 81 WYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLV 151 (272)
Q Consensus 81 ~~~~~~~g~~~~~~~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll 151 (272)
+......|++....|...+..++++++...++......+.+.++++++++|+++..++.|+.+++.|+.+-
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Y 151 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLY 151 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhee
Confidence 33445556666666999999999999999999999999999999999999999999999999999998753
No 42
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.65 E-value=2.6e-07 Score=69.60 Aligned_cols=67 Identities=12% Similarity=0.023 Sum_probs=59.9
Q ss_pred HHHHHHHHH-HHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhc
Q 024137 86 LLGFVDVQG-NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVL 152 (272)
Q Consensus 86 ~~g~~~~~~-~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~ 152 (272)
..++.+... +.++..++++.|.+.+..+.++.++++.+.+++++|||++.+|++|+.+++.|++++.
T Consensus 41 ~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 41 GLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 334455555 7888899999999999999889999999999999999999999999999999998875
No 43
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.63 E-value=2.7e-06 Score=74.00 Aligned_cols=133 Identities=29% Similarity=0.285 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHH-HHHHHHHHHHHHHHHHhc--chhhhhHHHHHHHHHHHHHH-
Q 024137 19 TLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSA-FAYFSLALVYGGVLLYRR--QRLRVAWYWYLLLGFVDVQG- 94 (272)
Q Consensus 19 ~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~-~R~~~a~~~l~~~~~~~~--~~~~~~~~~~~~~g~~~~~~- 94 (272)
...|...+..++++++......+++. ..++..... +..........+...... +.....+......|++....
T Consensus 152 ~~~g~~~~l~a~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~ 228 (292)
T COG0697 152 SLLGLLLALAAALLWALYTALVKRLS---RLGPVTLALLLQLLLALLLLLLFFLSGFGAPILSRAWLLLLYLGVFSTGLA 228 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc---CCChHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHH
Confidence 56799999999999998888888776 345555555 333322232222222222 12234466677888777754
Q ss_pred HHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhccc
Q 024137 95 NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLS 154 (272)
Q Consensus 95 ~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~ 154 (272)
+.++++++++.+++.++.+.++.|++..++++++++|+++..+++|..+.+.|+.+....
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 229 YLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999988654
No 44
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.57 E-value=3.8e-06 Score=76.06 Aligned_cols=133 Identities=13% Similarity=0.032 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcC-----CCChHHHHHHHHHHHHHHHHHHHH-Hhcchhh-----------h-hH
Q 024137 20 LYLLFLGQLVSFTLALMSFTSSLIADLG-----VDAPVTQSAFAYFSLALVYGGVLL-YRRQRLR-----------V-AW 81 (272)
Q Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~~l~~~~-----~~~p~~~~~~R~~~a~~~l~~~~~-~~~~~~~-----------~-~~ 81 (272)
+.|.+++.+++++++..++.+|++.++. ..++.....+-...+.++++|+.. .+..... . .+
T Consensus 193 ~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~ 272 (350)
T PTZ00343 193 WLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTK 272 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccch
Confidence 5699999999999999999999987532 245655555456677777777654 2221100 0 01
Q ss_pred HHHH---HHHHHHHHH-HHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhc
Q 024137 82 YWYL---LLGFVDVQG-NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVL 152 (272)
Q Consensus 82 ~~~~---~~g~~~~~~-~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~ 152 (272)
.... +.+.+.... |...+++++++++.+.++...+.|+++.+++++++||+++..+++|..+++.|+.+..
T Consensus 273 ~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs 347 (350)
T PTZ00343 273 GIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYS 347 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHh
Confidence 1111 111112222 4444579999999999999999999999999999999999999999999999998754
No 45
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=98.48 E-value=5.8e-05 Score=65.23 Aligned_cols=124 Identities=15% Similarity=0.091 Sum_probs=98.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHhh-hhhHHHHHHHHHHHhcccchhhHHH----HHHHHHhhhhhhcc
Q 024137 79 VAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLD-CCTIAWAIVLTWLFLGTRYSLWQLL----GAALCVLGLGLVLL 153 (272)
Q Consensus 79 ~~~~~~~~~g~~~~~~~~l~~~al~~~~a~~a~~l~-~~~Pv~~~lls~~~~~er~s~~~~~----gi~l~~~Gv~ll~~ 153 (272)
+.+..-++.|++....+...+.|+++.+++.+..+. ..+-+.+.+.+.++|||..+..+++ ++.+.++|+.+-..
T Consensus 43 ~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~ 122 (269)
T PF06800_consen 43 TSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSY 122 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcc
Confidence 446666788888888899999999999999999885 6777779999999999998877655 78888999999888
Q ss_pred ccCCCCCC-CCCCchhHHHHHHHHHHHHHHHHHHHhhhccCCChHHHHHHHH
Q 024137 154 SDAGGDGG-GGSRPLLGDVLVIAGTIFFATSNVGEEFFVKKKDRVEVVCMIG 204 (272)
Q Consensus 154 ~~~~~~~~-~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~ 204 (272)
.|..++.. .+.+...|....+++.+.|..|.++.|. .+.|+.+...-|.
T Consensus 123 ~~~~~~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~--~~~~~~~~~lPqa 172 (269)
T PF06800_consen 123 QDKKSDKSSSKSNMKKGILALLISTIGYWIYSVIPKA--FHVSGWSAFLPQA 172 (269)
T ss_pred ccccccccccccchhhHHHHHHHHHHHHHHHHHHHHh--cCCChhHhHHHHH
Confidence 77532221 1234468999999999999999999887 4677777655543
No 46
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=98.39 E-value=1.3e-05 Score=69.37 Aligned_cols=168 Identities=11% Similarity=0.069 Sum_probs=111.3
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHh--cchh-------hhhHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHhhhhhH
Q 024137 48 VDAPVTQSAFAYFSLALVYGGVLLYR--RQRL-------RVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTI 118 (272)
Q Consensus 48 ~~~p~~~~~~R~~~a~~~l~~~~~~~--~~~~-------~~~~~~~~~~g~~~~~~~~l~~~al~~~~a~~a~~l~~~~P 118 (272)
..=|+.++.+..++-.+......+.+ +.+. +...++....|+....---+-+++++|++.+..++..++.+
T Consensus 42 f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtalata~DIGLSN~sl~yVtlSlYTM~KSSsi 121 (349)
T KOG1443|consen 42 FHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTALATALDIGLSNWSLEYVTLSLYTMTKSSSI 121 (349)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhhhhhcccccccceeeeeeeeeeeeccccHH
Confidence 44488888877765554443332211 1111 11234444555433222445678999999999999999999
Q ss_pred HHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhccccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhhhccCC----
Q 024137 119 AWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLLGDVLVIAGTIFFATSNVGEEFFVKKK---- 194 (272)
Q Consensus 119 v~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~---- 194 (272)
+|+.+++.++.=||+++.-..-+++.-+|+.+..+.+ .+.+..|..+..+|.++-++-..+.+...++.
T Consensus 122 ~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~Ks-------Tqf~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~ 194 (349)
T KOG1443|consen 122 LFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKS-------TQFNIEGFFLVLAASLLSGLRWAFTQMLLRNQPSAK 194 (349)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecc-------cceeehhHHHHHHHHHhhhhhHHHHHHHHhcCcccc
Confidence 9999999999889999999999999999999988766 24557899999988888777777777665442
Q ss_pred -ChHHHHHHHHHHHHHHHHHHHHHhhccc
Q 024137 195 -DRVEVVCMIGVYGLLVSAVQLSILELKS 222 (272)
Q Consensus 195 -~~~~~~~~~~~~g~i~~~i~~~~~~~~~ 222 (272)
+|........-.-.+.+++..+.+|...
T Consensus 195 ~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~ 223 (349)
T KOG1443|consen 195 RNPIDTIFHLQPWMSIGLLPLSLLFEGLH 223 (349)
T ss_pred CCCeeeHHHhhhHHHHHHHHHHHHHcccc
Confidence 3444333333233333333455566543
No 47
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=98.35 E-value=1.6e-05 Score=67.08 Aligned_cols=130 Identities=15% Similarity=-0.017 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhcch-hhhh--HHHHHHHHHHHHHH-HH
Q 024137 21 YLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQR-LRVA--WYWYLLLGFVDVQG-NF 96 (272)
Q Consensus 21 ~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~-~~~~--~~~~~~~g~~~~~~-~~ 96 (272)
.|+.++..++.+|+..-+..++..+ .+..+.. ...-+.+++++..|+-...-.. ...+ ...-+..|++.... +.
T Consensus 148 ~Gv~~Al~AG~~Wa~YIv~G~r~g~-~~~g~~g-~a~gm~vAaviv~Pig~~~ag~~l~~p~ll~laLgvavlSSalPYs 225 (292)
T COG5006 148 VGVALALGAGACWALYIVLGQRAGR-AEHGTAG-VAVGMLVAALIVLPIGAAQAGPALFSPSLLPLALGVAVLSSALPYS 225 (292)
T ss_pred HHHHHHHHHhHHHHHHHHHcchhcc-cCCCchH-HHHHHHHHHHHHhhhhhhhcchhhcChHHHHHHHHHHHHhcccchH
Confidence 3899999999999999999999874 2333444 3447788888888875433221 1111 23345666666666 88
Q ss_pred HHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhc
Q 024137 97 LVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVL 152 (272)
Q Consensus 97 l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~ 152 (272)
+...++++.|....+.+.+++|.+.++..++++||++|..||.++...+.+.+=..
T Consensus 226 LEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~ 281 (292)
T COG5006 226 LEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGST 281 (292)
T ss_pred HHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccc
Confidence 89999999999999999999999999999999999999999999998888766443
No 48
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.20 E-value=1.2e-05 Score=62.19 Aligned_cols=72 Identities=24% Similarity=0.285 Sum_probs=63.1
Q ss_pred HHHHHHHHHHH-HHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHH--HhcccchhhHHHHHHHHHhhhhhhcccc
Q 024137 84 YLLLGFVDVQG-NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWL--FLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (272)
Q Consensus 84 ~~~~g~~~~~~-~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~--~~~er~s~~~~~gi~l~~~Gv~ll~~~~ 155 (272)
+...|+..... ..++..++++.|.+.+..+.+..+.++.+.++. ++||++|..|++|+.+.++|+.++..++
T Consensus 50 ~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~ 124 (129)
T PRK02971 50 AVLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPT 124 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCC
Confidence 56667666666 888999999999999999999998888888885 8999999999999999999999987544
No 49
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=98.12 E-value=5.5e-05 Score=64.59 Aligned_cols=181 Identities=18% Similarity=0.238 Sum_probs=132.2
Q ss_pred HHHHHHHHHhhcCCCChH--HHHHHHHHHHHHHHHHHHH-HhcchhhhhHHHHHHHHHHHHHHHHHHHHHhhcchhhHHH
Q 024137 35 LMSFTSSLIADLGVDAPV--TQSAFAYFSLALVYGGVLL-YRRQRLRVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVT 111 (272)
Q Consensus 35 ~~~~~~~~l~~~~~~~p~--~~~~~R~~~a~~~l~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~l~~~al~~~~a~~a~ 111 (272)
..+...-+..+..+.+|. .+++.+++.-.-+.+..+. .+.++...+|+.+..++.+..+..-+-..++.|.+-..-.
T Consensus 57 ~yGy~qElif~~~gfkp~GWylTlvQf~~Ysg~glie~~~~~~k~r~iP~rtY~~la~~t~gtmGLsn~SlgYLNYPtQv 136 (367)
T KOG1582|consen 57 VYGYLQELIFNVEGFKPFGWYLTLVQFLVYSGFGLIELQLIQTKRRVIPWRTYVILAFLTVGTMGLSNGSLGYLNYPTQV 136 (367)
T ss_pred HHHHHHHHHhccccCcccchHHHHHHHHHHHhhhheEEEeecccceecchhHhhhhHhhhhhccccCcCccccccCcHHH
Confidence 344445555555666664 4555555544333222211 2223334568888888877766666777788888888888
Q ss_pred HhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhccccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhhhc
Q 024137 112 LLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLLGDVLVIAGTIFFATSNVGEEFFV 191 (272)
Q Consensus 112 ~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~ 191 (272)
+..++.-+-+++.+.++-++|-...+..+..+..+|.++....|. +.....+..|+.+.=+|-++-|+-..++++..
T Consensus 137 iFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs---~~sPNF~~~Gv~mIsgALl~DA~iGNvQEk~m 213 (367)
T KOG1582|consen 137 IFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADS---QTSPNFNLIGVMMISGALLADAVIGNVQEKAM 213 (367)
T ss_pred HHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhccc---ccCCCcceeeHHHHHHHHHHHHHhhHHHHHHH
Confidence 888999999999999999999999999999999999999887663 22234567999999999999999999999886
Q ss_pred cC--CChHHHHHHHHHHHHHHHHHHHHHh
Q 024137 192 KK--KDRVEVVCMIGVYGLLVSAVQLSIL 218 (272)
Q Consensus 192 ~~--~~~~~~~~~~~~~g~i~~~i~~~~~ 218 (272)
+. .+..++..+....|.+.++.|..+.
T Consensus 214 ~~~~~ss~EmvfySy~iG~vflf~~mvlT 242 (367)
T KOG1582|consen 214 KMNPASSSEMVFYSYGIGFVFLFAPMVLT 242 (367)
T ss_pred hhCCCCcceEEEeeecccHHHHHHHHHhc
Confidence 65 4566778888888888887666544
No 50
>PRK13499 rhamnose-proton symporter; Provisional
Probab=98.10 E-value=0.00034 Score=62.80 Aligned_cols=164 Identities=11% Similarity=-0.044 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHH----HH-Hh-----cchhhhhHHHHHH
Q 024137 17 LRTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGV----LL-YR-----RQRLRVAWYWYLL 86 (272)
Q Consensus 17 ~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~----~~-~~-----~~~~~~~~~~~~~ 86 (272)
+++..|+++-.+.++++++...-.|+ .+..+.+-.+.+.. ....+ +.|+ +. +. ++...+.+..-.+
T Consensus 3 ~~~~~G~~~~~i~~~~~GS~~~p~K~-~k~w~wE~~W~v~g--i~~wl-~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l 78 (345)
T PRK13499 3 NAIILGIIWHLIGGASSGSFYAPFKK-VKKWSWETMWSVGG--IFSWL-ILPWLIAALLLPDFWAYYSSFSGSTLLPVFL 78 (345)
T ss_pred chhHHHHHHHHHHHHHhhcccccccc-cCCCchhHHHHHHH--HHHHH-HHHHHHHHHHhhhHHHHHHhcCHHHHHHHHH
Confidence 46788999999999999888877777 33333223332111 11111 1111 11 10 0111233555667
Q ss_pred HHHHHHHHHHHHHHHhhcchhhHHHHh-hhhhHHHHHHHHHHHhcccc---h----hhHHHHHHHHHhhhhhhcc----c
Q 024137 87 LGFVDVQGNFLVNKAYQFSSITSVTLL-DCCTIAWAIVLTWLFLGTRY---S----LWQLLGAALCVLGLGLVLL----S 154 (272)
Q Consensus 87 ~g~~~~~~~~l~~~al~~~~a~~a~~l-~~~~Pv~~~lls~~~~~er~---s----~~~~~gi~l~~~Gv~ll~~----~ 154 (272)
.|.+...++..++.++++...+.+..+ ..++-+...++..++++|-. + ..-..|+++.++|+++... .
T Consensus 79 ~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~~k 158 (345)
T PRK13499 79 FGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQLK 158 (345)
T ss_pred HHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 777777779999999999999999976 58899999999999999765 2 3467889999999999887 4
Q ss_pred cCCCCC--CCCCCchhHHHHHHHHHHHHHHHH
Q 024137 155 DAGGDG--GGGSRPLLGDVLVIAGTIFFATSN 184 (272)
Q Consensus 155 ~~~~~~--~~~~~~~~G~~~~l~a~~~~a~~~ 184 (272)
|.++.+ +.+....+|...++++++.+++|+
T Consensus 159 ~~~~~~~~~~~~~~~KGi~ialisgi~~~~f~ 190 (345)
T PRK13499 159 ERKMGIKKAEEFNLKKGLILAVMSGIFSACFS 190 (345)
T ss_pred ccccccccccccchHhHHHHHHHHHHHHHHHH
Confidence 421111 122345799999999999999999
No 51
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=98.07 E-value=0.00015 Score=64.19 Aligned_cols=122 Identities=19% Similarity=0.168 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHH-
Q 024137 16 TLRTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQRLRVAWYWYLLLGFVDVQG- 94 (272)
Q Consensus 16 ~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~- 94 (272)
+.+...|+.++++.+++.+......|+-..+.+.++. |-- ...++..+++ .+..|+.....
T Consensus 2 ~~~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~-----~~~----------~~~~~~l~~~---~W~~G~~~~~~g 63 (300)
T PF05653_consen 2 NTDFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSL-----RAG----------SGGRSYLRRP---LWWIGLLLMVLG 63 (300)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-----ccc----------chhhHHHhhH---HHHHHHHHHhcc
Confidence 3567789999999888877776666665432111010 100 0000111122 23334333333
Q ss_pred HHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhcccc
Q 024137 95 NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (272)
Q Consensus 95 ~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~ 155 (272)
..+.+.|+...|++..+.+....-++..+++..++|||++++++.|..+++.|..++...+
T Consensus 64 ~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~ 124 (300)
T PF05653_consen 64 EILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFA 124 (300)
T ss_pred hHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeC
Confidence 7777889999999999999999999999999999999999999999999999999876544
No 52
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=98.05 E-value=0.0002 Score=63.49 Aligned_cols=135 Identities=15% Similarity=0.108 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHH--hcch---------hhhhHHHHHHHHH
Q 024137 21 YLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLY--RRQR---------LRVAWYWYLLLGF 89 (272)
Q Consensus 21 ~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~~--~~~~---------~~~~~~~~~~~g~ 89 (272)
.|+.+..+..++-+..+....++.++.+.++....++-...+.+...+.... .... .+..+...+..++
T Consensus 154 ~G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~ 233 (303)
T PF08449_consen 154 LGIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSL 233 (303)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHH
Confidence 3999999988888888888888877667788888888877777666655443 2211 1122455667777
Q ss_pred HHHHHHHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhcccc
Q 024137 90 VDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (272)
Q Consensus 90 ~~~~~~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~ 155 (272)
.+..++.+.+.-.++.++...+++..+--+++.+++.++++++++..+|+|+.+.+.|..+-...+
T Consensus 234 ~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~ 299 (303)
T PF08449_consen 234 TGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAK 299 (303)
T ss_pred HHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhh
Confidence 777777777777899999999999999999999999999999999999999999999998876554
No 53
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=97.89 E-value=0.00033 Score=58.75 Aligned_cols=139 Identities=13% Similarity=0.138 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhccccCCCCC
Q 024137 81 WYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDG 160 (272)
Q Consensus 81 ~~~~~~~g~~~~~~~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~~~~~~ 160 (272)
-+.+..++.....+...-+.|+|+.|-.+..+=.+..|+-++++...+.|++-++.+...+...+.|+++..+.+....+
T Consensus 85 ~~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g 164 (337)
T KOG1580|consen 85 TKMYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGG 164 (337)
T ss_pred chHHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccCC
Confidence 44577777766666777899999999999999999999999999999999999999999999999999999987641111
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHhhhccC--CChHHHHHHHHHHHHHHHHHHHHHhhc
Q 024137 161 GGGSRPLLGDVLVIAGTIFFATSNVGEEFFVKK--KDRVEVVCMIGVYGLLVSAVQLSILEL 220 (272)
Q Consensus 161 ~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~--~~~~~~~~~~~~~g~i~~~i~~~~~~~ 220 (272)
..+.....|.++.++|-..-+.....++|..++ -+..+++.+..+++.+.+. ...++..
T Consensus 165 ~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg-~g~lfTG 225 (337)
T KOG1580|consen 165 AEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLG-AGLLFTG 225 (337)
T ss_pred CcccccchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhh-hhheehh
Confidence 122344789999999999999999999987555 3455677788888887775 3444433
No 54
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.84 E-value=0.00039 Score=60.15 Aligned_cols=122 Identities=7% Similarity=-0.037 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHH--hcchhhhhHHHHHHHHHHHHH
Q 024137 16 TLRTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLY--RRQRLRVAWYWYLLLGFVDVQ 93 (272)
Q Consensus 16 ~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~~--~~~~~~~~~~~~~~~g~~~~~ 93 (272)
+++..+|+....+..+..+....+.+.. +.+|....+ -..++.++-...+.. +++..++..++-.+.|++...
T Consensus 133 ~~~~~kgi~~Ll~stigy~~Y~~~~~~~----~~~~~~~~l-PqaiGm~i~a~i~~~~~~~~~~~k~~~~nil~G~~w~i 207 (269)
T PF06800_consen 133 KSNMKKGILALLISTIGYWIYSVIPKAF----HVSGWSAFL-PQAIGMLIGAFIFNLFSKKPFFEKKSWKNILTGLIWGI 207 (269)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHhc----CCChhHhHH-HHHHHHHHHHHHHhhcccccccccchHHhhHHHHHHHH
Confidence 4567788888888888777777665553 455655433 333332222221111 222233344567888988888
Q ss_pred HHHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHH
Q 024137 94 GNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAA 142 (272)
Q Consensus 94 ~~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~ 142 (272)
+|.+++.|.+....+.+-.+..+.++...+.+.+++||+=+++++.-..
T Consensus 208 gnl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~ 256 (269)
T PF06800_consen 208 GNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTL 256 (269)
T ss_pred HHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHH
Confidence 8999999999999999999999999999999999999999988775444
No 55
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.81 E-value=0.00016 Score=61.87 Aligned_cols=169 Identities=17% Similarity=0.189 Sum_probs=115.5
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHH-hc-------chhh---hhHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHhhhh
Q 024137 48 VDAPVTQSAFAYFSLALVYGGVLLY-RR-------QRLR---VAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCC 116 (272)
Q Consensus 48 ~~~p~~~~~~R~~~a~~~l~~~~~~-~~-------~~~~---~~~~~~~~~g~~~~~~~~l~~~al~~~~a~~a~~l~~~ 116 (272)
-..|..++++.-+....+...+-+. ++ ++.+ +.-+.+.-.++..+.+-.+-+..++|.+++..-+=.++
T Consensus 58 Ld~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVfi~mI~fnnlcL~yVgVaFYyvgRsL 137 (347)
T KOG1442|consen 58 LDAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVFILMISFNNLCLKYVGVAFYYVGRSL 137 (347)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhheeeeehhccceehhhcceEEEEeccch
Confidence 4569999998876665544433221 11 1111 11234444444433333344568889999888888889
Q ss_pred hHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhccccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhhhccCC--
Q 024137 117 TIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLLGDVLVIAGTIFFATSNVGEEFFVKKK-- 194 (272)
Q Consensus 117 ~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~-- 194 (272)
.-+|+.+++++++|+|-+..-..+..+.+.|.-+=. ++ + +..+.....|.++++.|.++-|+..+..||.....
T Consensus 138 ttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGv-dq-E--~~~~~ls~~GvifGVlaSl~vAlnaiytkk~l~~v~~ 213 (347)
T KOG1442|consen 138 TTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGV-DQ-E--GSTGTLSWIGVIFGVLASLAVALNAIYTKKVLPPVGD 213 (347)
T ss_pred hhhHHHHhHHhhcccccccccceeehhheehheecc-cc-c--cccCccchhhhHHHHHHHHHHHHHHHhhheecccccC
Confidence 999999999999999999888888887777743321 11 1 11233457999999999999999999999875553
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhcc
Q 024137 195 DRVEVVCMIGVYGLLVSAVQLSILELK 221 (272)
Q Consensus 195 ~~~~~~~~~~~~g~i~~~i~~~~~~~~ 221 (272)
..+..+.+....+.++.+ |......+
T Consensus 214 ~iw~lt~ynnv~a~lLfl-pll~lnge 239 (347)
T KOG1442|consen 214 CIWRLTAYNNVNALLLFL-PLLILNGE 239 (347)
T ss_pred eehhhHHHHHHHHHHHHH-HHHHHcch
Confidence 367888888888888886 76665543
No 56
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.77 E-value=0.00043 Score=51.78 Aligned_cols=61 Identities=18% Similarity=0.270 Sum_probs=53.8
Q ss_pred HHHH-HHHHHHHhhcchhhHHHHh-hhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhh
Q 024137 91 DVQG-NFLVNKAYQFSSITSVTLL-DCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLV 151 (272)
Q Consensus 91 ~~~~-~~l~~~al~~~~a~~a~~l-~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll 151 (272)
.... +++...|+++.|.+.+-.+ ....-+.+.+.+++++||+++..|++|+.+.+.|++.+
T Consensus 44 ~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 44 AVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 4444 7788899999999998765 67888999999999999999999999999999999876
No 57
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.75 E-value=0.00049 Score=51.64 Aligned_cols=68 Identities=18% Similarity=0.298 Sum_probs=58.2
Q ss_pred HHHHHHH-HHHHHHHhhcchhhHHHHh-hhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhcccc
Q 024137 88 GFVDVQG-NFLVNKAYQFSSITSVTLL-DCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (272)
Q Consensus 88 g~~~~~~-~~l~~~al~~~~a~~a~~l-~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~ 155 (272)
.+..... ..++..++++.|.+.+-.+ ....-+.+.+.+++++||+++..+++|+.+.++|++.+-..+
T Consensus 36 ~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~ 105 (110)
T PRK09541 36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3444455 7778899999999998876 668889999999999999999999999999999999986443
No 58
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.70 E-value=0.00054 Score=50.61 Aligned_cols=65 Identities=23% Similarity=0.208 Sum_probs=56.6
Q ss_pred HHHHHH-HHHHHHHhhcchhhHHHH-hhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhcc
Q 024137 89 FVDVQG-NFLVNKAYQFSSITSVTL-LDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLL 153 (272)
Q Consensus 89 ~~~~~~-~~l~~~al~~~~a~~a~~-l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~ 153 (272)
..+... +.+...|+++.|.+.+-. -...-.+-+.+.++++|||+.+..+++++.+.++|++.+-.
T Consensus 37 ~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~ 103 (106)
T COG2076 37 IVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKL 103 (106)
T ss_pred HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhh
Confidence 344444 788889999999999875 47888999999999999999999999999999999998754
No 59
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.70 E-value=0.00061 Score=50.64 Aligned_cols=64 Identities=19% Similarity=0.062 Sum_probs=55.7
Q ss_pred HHHHHH-HHHHHHHhhcchhhHHHHh-hhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhc
Q 024137 89 FVDVQG-NFLVNKAYQFSSITSVTLL-DCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVL 152 (272)
Q Consensus 89 ~~~~~~-~~l~~~al~~~~a~~a~~l-~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~ 152 (272)
+..... +++...|+++.|.+.+-.+ ...--+.+.+.+.+++||+++..+++|+.+.+.|++.+-
T Consensus 36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~ 101 (105)
T PRK11431 36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLK 101 (105)
T ss_pred HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Confidence 334444 7788899999999998765 568889999999999999999999999999999999874
No 60
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.64 E-value=0.00042 Score=52.73 Aligned_cols=68 Identities=16% Similarity=0.180 Sum_probs=58.5
Q ss_pred HHHHHHH-HHHHHHHhhcchhhHHHHh-hhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhcccc
Q 024137 88 GFVDVQG-NFLVNKAYQFSSITSVTLL-DCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (272)
Q Consensus 88 g~~~~~~-~~l~~~al~~~~a~~a~~l-~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~ 155 (272)
.+..... .+++..++++.|.+.+-.+ ....-+.+.+.+.+++||++|..+++|+.+.++|++.+-..+
T Consensus 36 ~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 36 MLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 3444444 7888899999999998876 578999999999999999999999999999999999886544
No 61
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.52 E-value=0.0054 Score=47.97 Aligned_cols=127 Identities=18% Similarity=0.170 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhcc-hh---hhhHHHHHHHHHHHHHHHHHH
Q 024137 23 LFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQ-RL---RVAWYWYLLLGFVDVQGNFLV 98 (272)
Q Consensus 23 ~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~-~~---~~~~~~~~~~g~~~~~~~~l~ 98 (272)
++++..+..+.+........+.++-+ +|...++.-+..+.+.+..+....++ .. ++..++...-|+++...-.+.
T Consensus 3 ~lla~~aG~~i~~q~~~N~~L~~~~g-s~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p~w~~lGG~lG~~~V~~~ 81 (138)
T PF04657_consen 3 ILLALLAGALIALQAAFNGQLGKALG-SPLVASFISFGVGFILLLIILLITGRPSLASLSSVPWWAYLGGLLGVFFVLSN 81 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCChHHhccHHHHHHHHHHH
Confidence 45566666777777777777775422 59999999998888877766554333 21 111233455667676667777
Q ss_pred HHHhhcchhhHHHHh-hhhhHHHHHHHHHH----HhcccchhhHHHHHHHHHhhhhh
Q 024137 99 NKAYQFSSITSVTLL-DCCTIAWAIVLTWL----FLGTRYSLWQLLGAALCVLGLGL 150 (272)
Q Consensus 99 ~~al~~~~a~~a~~l-~~~~Pv~~~lls~~----~~~er~s~~~~~gi~l~~~Gv~l 150 (272)
....++.+++.+..+ ..-+-+...++.++ .-|++++.++.+|+++.++|+.+
T Consensus 82 ~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 82 IILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 888899998888764 56777778888886 35789999999999999999864
No 62
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=97.42 E-value=0.005 Score=51.41 Aligned_cols=187 Identities=14% Similarity=0.039 Sum_probs=124.9
Q ss_pred HHHHHHHhhcCC-CChHHHHHHHHHHHHHHHHHHHHHhc-chh-hhhHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHh
Q 024137 37 SFTSSLIADLGV-DAPVTQSAFAYFSLALVYGGVLLYRR-QRL-RVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLL 113 (272)
Q Consensus 37 ~~~~~~l~~~~~-~~p~~~~~~R~~~a~~~l~~~~~~~~-~~~-~~~~~~~~~~g~~~~~~~~l~~~al~~~~a~~a~~l 113 (272)
+...|+..+..+ .--+.+.+.+.+...+.+.. +++-| -.. .++.+.+...+++....-+.--.++||.++...++.
T Consensus 22 TltNKyVls~~gfnMnflll~vQSlvcvv~l~i-Lk~l~~~~fR~t~aK~WfpiSfLLv~MIyt~SKsLqyL~vpiYTiF 100 (309)
T COG5070 22 TLTNKYVLSNLGFNMNFLLLAVQSLVCVVGLLI-LKFLRLVEFRLTKAKKWFPISFLLVVMIYTSSKSLQYLAVPIYTIF 100 (309)
T ss_pred HHhhHheecCCCCchhhHHHHHHHHHHHHHHHH-HHHHhHhheehhhhhhhcCHHHHHHHHHHhcccceeeeeeeHHHHh
Confidence 334455544333 22344455555554443332 22111 111 223344556666555555556789999999999999
Q ss_pred hhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhccccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhhhcc-
Q 024137 114 DCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLLGDVLVIAGTIFFATSNVGEEFFVK- 192 (272)
Q Consensus 114 ~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~- 192 (272)
..+..+.++..+..+||.|++..+..+.++.+..-..-.++|.............|++++..-+++-+.+....|+..+
T Consensus 101 KNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~~~~~lN~GY~Wm~~NclssaafVL~mrkri~l 180 (309)
T COG5070 101 KNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASAFKAQILNPGYLWMFTNCLSSAAFVLIMRKRIKL 180 (309)
T ss_pred ccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHHHHhcccCCceEEEehhhHhHHHHHHHHHHhhcc
Confidence 9999999999999999999999999998888877777666664111112234568999999999999999999997644
Q ss_pred -CCChHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 024137 193 -KKDRVEVVCMIGVYGLLVSAVQLSILELKSLE 224 (272)
Q Consensus 193 -~~~~~~~~~~~~~~g~i~~~i~~~~~~~~~~~ 224 (272)
+....+.+.|..+.+..+++....++|.++..
T Consensus 181 tNf~d~dtmfYnNllslPiL~~~s~~~edws~~ 213 (309)
T COG5070 181 TNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPG 213 (309)
T ss_pred cccchhhHHHHhhhHHHHHHHHHHHHhccCCcc
Confidence 34566677888888888876555566644433
No 63
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=97.26 E-value=3.7e-05 Score=64.75 Aligned_cols=172 Identities=15% Similarity=0.119 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhcchhh-hhHHHHHHHHHHHHHHHHHHHH
Q 024137 22 LLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQRLR-VAWYWYLLLGFVDVQGNFLVNK 100 (272)
Q Consensus 22 ~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~l~~~ 100 (272)
.++++.+-++.|+....++.+... +|......--+-+.++....++...+... +.+..-++.|.+...++...+.
T Consensus 3 ~~liaL~P~l~WGsip~v~~k~GG----~p~qQ~lGtT~GALifaiiv~~~~~p~~T~~~~iv~~isG~~Ws~GQ~~Qfk 78 (288)
T COG4975 3 DLLIALLPALGWGSIPLVANKFGG----KPYQQTLGTTLGALIFAIIVFLFVSPELTLTIFIVGFISGAFWSFGQANQFK 78 (288)
T ss_pred hHHHHHHHHHHhcccceeeeecCC----ChhHhhhhccHHHHHHHHHHheeecCccchhhHHHHHHhhhHhhhhhhhhhh
Confidence 567888999999998888877752 35554443222222222222222222222 2233445566666666899999
Q ss_pred HhhcchhhHHHHhh-hhhHHHHHHHHHHHhcccchhhHH----HHHHHHHhhhhhhccccCCCCCC-CCCCchhHHHHHH
Q 024137 101 AYQFSSITSVTLLD-CCTIAWAIVLTWLFLGTRYSLWQL----LGAALCVLGLGLVLLSDAGGDGG-GGSRPLLGDVLVI 174 (272)
Q Consensus 101 al~~~~a~~a~~l~-~~~Pv~~~lls~~~~~er~s~~~~----~gi~l~~~Gv~ll~~~~~~~~~~-~~~~~~~G~~~~l 174 (272)
|.++.+++.+..+. .++-+-+.+++.+.+||..+..+. .++++.+.|+.+-.+.|..|... ..++.-.|....+
T Consensus 79 a~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk~~~~~~n~kkgi~~L~ 158 (288)
T COG4975 79 AIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNKEEENPSNLKKGIVILL 158 (288)
T ss_pred heeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeeccccccccChHhhhhheeeee
Confidence 99999999999875 678888999999999999987654 46777788888877766322221 1233468888889
Q ss_pred HHHHHHHHHHHHHhhhccCCChHHH
Q 024137 175 AGTIFFATSNVGEEFFVKKKDRVEV 199 (272)
Q Consensus 175 ~a~~~~a~~~v~~k~~~~~~~~~~~ 199 (272)
.|.+.|-.|.+..+.. +.|.++.
T Consensus 159 iSt~GYv~yvvl~~~f--~v~g~sa 181 (288)
T COG4975 159 ISTLGYVGYVVLFQLF--DVDGLSA 181 (288)
T ss_pred eeccceeeeEeeeccc--cccchhh
Confidence 9999999999998875 2444443
No 64
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.22 E-value=0.011 Score=52.97 Aligned_cols=138 Identities=18% Similarity=0.142 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHH-Hhcchhh---hhHHH-HHHHH--
Q 024137 16 TLRTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLL-YRRQRLR---VAWYW-YLLLG-- 88 (272)
Q Consensus 16 ~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~-~~~~~~~---~~~~~-~~~~g-- 88 (272)
.++..+|-++.+..|++.+.....-.++.++ .++......--+.+.++..+... .+++..+ .++.. ....|
T Consensus 163 ~~~~i~GDll~l~~a~lya~~nV~~E~~v~~--~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~~ 240 (334)
T PF06027_consen 163 GSNPILGDLLALLGAILYAVSNVLEEKLVKK--APRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGYA 240 (334)
T ss_pred CCccchhHHHHHHHHHHHHHHHHHHHHhccc--CCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHHH
Confidence 3467889999999999999999999888753 34443332222333443333322 2332221 11111 11222
Q ss_pred HHHHHHHHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhcccc
Q 024137 89 FVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (272)
Q Consensus 89 ~~~~~~~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~ 155 (272)
+.....+.+....++++++....+=.-+..+++.+...+++|+++++..++|.++.++|..+....+
T Consensus 241 ~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~ 307 (334)
T PF06027_consen 241 LCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAE 307 (334)
T ss_pred HHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccC
Confidence 2122224455667888888877776678899999999999999999999999999999999987655
No 65
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=97.08 E-value=0.0075 Score=43.79 Aligned_cols=53 Identities=17% Similarity=0.187 Sum_probs=31.4
Q ss_pred HHHH-HHHHHHHhhcchhhHHHHh-hhhhHHHHHHHHHHHhcccchhhHHHHHHH
Q 024137 91 DVQG-NFLVNKAYQFSSITSVTLL-DCCTIAWAIVLTWLFLGTRYSLWQLLGAAL 143 (272)
Q Consensus 91 ~~~~-~~l~~~al~~~~a~~a~~l-~~~~Pv~~~lls~~~~~er~s~~~~~gi~l 143 (272)
.... ..++..|+++.|.+.+-.+ .....+.+.+.+.+++||++|..|+.|+.+
T Consensus 38 ~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~l 92 (93)
T PF00893_consen 38 GYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGL 92 (93)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHH
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheee
Confidence 4444 7788899999999999765 579999999999999999999999999875
No 66
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=96.97 E-value=0.00064 Score=58.12 Aligned_cols=131 Identities=15% Similarity=0.173 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHH----HhcchhhhhHHHHHHHHHHHHHHHHHH
Q 024137 23 LFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLL----YRRQRLRVAWYWYLLLGFVDVQGNFLV 98 (272)
Q Consensus 23 ~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~----~~~~~~~~~~~~~~~~g~~~~~~~~l~ 98 (272)
.+-+.-.++..+..=++-+++.|.- +......+-.+++.+.-...+. ...+.-.++|+....+|+++...+.+.
T Consensus 193 t~aai~s~lf~asvyIilR~iGk~~--h~~msvsyf~~i~lV~s~I~~~~ig~~~lP~cgkdr~l~~~lGvfgfigQIll 270 (346)
T KOG4510|consen 193 TVAAISSVLFGASVYIILRYIGKNA--HAIMSVSYFSLITLVVSLIGCASIGAVQLPHCGKDRWLFVNLGVFGFIGQILL 270 (346)
T ss_pred hHHHHHhHhhhhhHHHHHHHhhccc--cEEEEehHHHHHHHHHHHHHHhhccceecCccccceEEEEEehhhhhHHHHHH
Confidence 3334444444445556667775432 2222222222333332222221 122333566766788999999999999
Q ss_pred HHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhcccc
Q 024137 99 NKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (272)
Q Consensus 99 ~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~ 155 (272)
..++|.--++.++++.++..++..+.-.+++|+.|+++.|.|+.+.+.....+....
T Consensus 271 Tm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~k 327 (346)
T KOG4510|consen 271 TMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALKK 327 (346)
T ss_pred HHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHHH
Confidence 999999999999999999999999999999999999999999887776666655433
No 67
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=96.91 E-value=0.022 Score=49.06 Aligned_cols=49 Identities=12% Similarity=0.143 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHH
Q 024137 80 AWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLF 128 (272)
Q Consensus 80 ~~~~~~~~g~~~~~~~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~ 128 (272)
+|......|+.....+.++++|+++.+++.++...+++|+++.+++.+.
T Consensus 207 ~~~~l~~~g~~t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 207 IWLLLVLAGLITGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 5666777777644449999999999999999999999999999999764
No 68
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=96.88 E-value=0.015 Score=49.02 Aligned_cols=67 Identities=18% Similarity=0.298 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhh
Q 024137 84 YLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGL 150 (272)
Q Consensus 84 ~~~~g~~~~~~~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~l 150 (272)
.....+.+.....+..+.+++.+...-+....+.++++.+++.++++|+++..++.|+.+.+.|+.+
T Consensus 155 ~~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 155 VWIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 3344444444467788899999999999999999999999999999999999999999999988653
No 69
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=96.87 E-value=0.07 Score=46.43 Aligned_cols=75 Identities=21% Similarity=0.315 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhcccc
Q 024137 81 WYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (272)
Q Consensus 81 ~~~~~~~g~~~~~~~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~ 155 (272)
+..+...|......-.++..|-++.+-+....+.|..|....+++.+++||.++..|..+-+..-.|+++...++
T Consensus 211 ~~LLv~aG~vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~ 285 (293)
T COG2962 211 WLLLVLAGLVTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDG 285 (293)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666668889999999999999999999999999999999999999999999999999988887654
No 70
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=96.85 E-value=0.0042 Score=55.19 Aligned_cols=136 Identities=16% Similarity=0.162 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh--cCCCChHHHHHHHHHHHHHHHH-HHHHHh-cchh--------hhhHHHHHHH
Q 024137 20 LYLLFLGQLVSFTLALMSFTSSLIAD--LGVDAPVTQSAFAYFSLALVYG-GVLLYR-RQRL--------RVAWYWYLLL 87 (272)
Q Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~~l~~--~~~~~p~~~~~~R~~~a~~~l~-~~~~~~-~~~~--------~~~~~~~~~~ 87 (272)
+.|.+.+.+.-+..+.-.+.++++.+ ....++..+..+-.-++...++ |+.... +... .-+.......
T Consensus 162 ~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (316)
T KOG1441|consen 162 LFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLILLLN 241 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHHHHH
Confidence 56888888888888888888888874 3467787777766667777776 765432 1111 1112233344
Q ss_pred HHHHHHHHHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhcccc
Q 024137 88 GFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (272)
Q Consensus 88 g~~~~~~~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~ 155 (272)
+++....|...+..+.++++-+-++.....=..+...++.+++|+++..+..|.++++.|+.+-....
T Consensus 242 sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k 309 (316)
T KOG1441|consen 242 SVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAK 309 (316)
T ss_pred HHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHh
Confidence 45555558889999999999999999999999999999999999999999999999999999876543
No 71
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=96.45 E-value=0.0093 Score=44.78 Aligned_cols=109 Identities=14% Similarity=0.112 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHhhcchh
Q 024137 28 LVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQRLRVAWYWYLLLGFVDVQGNFLVNKAYQFSSI 107 (272)
Q Consensus 28 ~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~al~~~~a 107 (272)
+.+++|+.+..+-|+-.+..+..... . |..--... .-.+|+ +.+-=.++..+...|++.+.+.|.
T Consensus 3 ~Vg~~WG~Tnpfik~g~~~~~~~~~~--~-~~~~~~~~-----------Ll~n~~-y~ipf~lNq~GSv~f~~~L~~~dl 67 (113)
T PF10639_consen 3 LVGILWGCTNPFIKRGSSGLEKVKAS--L-QLLQEIKF-----------LLLNPK-YIIPFLLNQSGSVLFFLLLGSADL 67 (113)
T ss_pred eehHHhcCchHHHHHHHhhcCCccch--H-HHHHHHHH-----------HHHhHH-HHHHHHHHHHHHHHHHHHHhcCCc
Confidence 35678888888887776532211111 1 21111111 112333 333223466668999999999999
Q ss_pred hHHHHh-hhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhh
Q 024137 108 TSVTLL-DCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLV 151 (272)
Q Consensus 108 ~~a~~l-~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll 151 (272)
+.+..+ +++.=++|.+.++++.+|..+++.++|+++.+.|+.+.
T Consensus 68 SlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 68 SLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred eeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 999988 58899999999988888888899999999999998763
No 72
>COG2510 Predicted membrane protein [Function unknown]
Probab=96.33 E-value=0.053 Score=41.43 Aligned_cols=89 Identities=10% Similarity=-0.064 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCChHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHh
Q 024137 169 GDVLVIAGTIFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILELKSLESVEWSTNILLGFAGYAASSFMFYT 248 (272)
Q Consensus 169 G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~g~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 248 (272)
-.++++++++.++...++.|--.++.||...+........+.+.+......+.+. .-+.+...+.....-+++......
T Consensus 4 ~~~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~-~~~~~~k~~lflilSGla~glswl 82 (140)
T COG2510 4 AIIYALLSALFAGLTPIFAKIGLEGVDPDFATTIRTIVILIFLLIVLLVTGNWQA-GGEIGPKSWLFLILSGLAGGLSWL 82 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHhcCceec-ccccCcceehhhhHHHHHHHHHHH
Confidence 3589999999999999999998899999999888888877777633333322221 222455555555444456666667
Q ss_pred hHHHHHHhhh
Q 024137 249 LAPFVLKVIL 258 (272)
Q Consensus 249 ~~~~~~k~~~ 258 (272)
+|.+.+|.+.
T Consensus 83 ~Yf~ALk~G~ 92 (140)
T COG2510 83 LYFRALKKGK 92 (140)
T ss_pred HHHHHHhcCC
Confidence 7778899876
No 73
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.27 E-value=0.24 Score=39.09 Aligned_cols=131 Identities=15% Similarity=0.154 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhcc--hhh--hh-HHHHHHHHHHHHHH
Q 024137 20 LYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQ--RLR--VA-WYWYLLLGFVDVQG 94 (272)
Q Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~--~~~--~~-~~~~~~~g~~~~~~ 94 (272)
...++.+..+..+....+.+...+.+... +|..-++.-+..+..++..+.+.+.+ ... .+ .++..+-|.++...
T Consensus 4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~-spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~~GG~lGa~~ 82 (150)
T COG3238 4 YLYLLFAILAGALLPLQAAINGRLARYLG-SPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAWIGGLLGAIF 82 (150)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHHHccchhhhh
Confidence 34566777777788888888888886543 68888888998887777666554222 111 22 22344445444444
Q ss_pred HHHHHHHhhcchhhH-HHHhhhhhHHHHHHHHHHHh----cccchhhHHHHHHHHHhhhhhh
Q 024137 95 NFLVNKAYQFSSITS-VTLLDCCTIAWAIVLTWLFL----GTRYSLWQLLGAALCVLGLGLV 151 (272)
Q Consensus 95 ~~l~~~al~~~~a~~-a~~l~~~~Pv~~~lls~~~~----~er~s~~~~~gi~l~~~Gv~ll 151 (272)
-..-.....+..++. ..++.+.+-+..+++..+=. +++++..++.|+++.++|+.++
T Consensus 83 vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~ 144 (150)
T COG3238 83 VTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLA 144 (150)
T ss_pred hhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHh
Confidence 333344555555555 44567888888888887733 5889999999999999995444
No 74
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=96.21 E-value=0.054 Score=48.68 Aligned_cols=139 Identities=19% Similarity=0.145 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--C-CChHHHHHHHHHHHHHHHHHHHH----Hhcchh----hhhHHHHH
Q 024137 17 LRTLYLLFLGQLVSFTLALMSFTSSLIADLG--V-DAPVTQSAFAYFSLALVYGGVLL----YRRQRL----RVAWYWYL 85 (272)
Q Consensus 17 ~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~--~-~~p~~~~~~R~~~a~~~l~~~~~----~~~~~~----~~~~~~~~ 85 (272)
+|.+.|.++++..|++.+.....-|+....+ . .-+....+ --+...++++|.+. ....+. ..+...+.
T Consensus 243 ~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGf-vGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv 321 (416)
T KOG2765|consen 243 SRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGF-VGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVV 321 (416)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHH-HHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeee
Confidence 4778999999999999999988887765432 1 22333333 22344444554332 122221 12233466
Q ss_pred HHHHHHHHH-HHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhccccC
Q 024137 86 LLGFVDVQG-NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDA 156 (272)
Q Consensus 86 ~~g~~~~~~-~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~~ 156 (272)
+.++++... .+++.+|.-.+++-.+++=.+......++...++.++++|..+++|.+..++|.+.+...+.
T Consensus 322 ~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~ 393 (416)
T KOG2765|consen 322 FNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSE 393 (416)
T ss_pred HhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecccc
Confidence 777777777 99999999999999999877777777888888888999999999999999999999887663
No 75
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=96.19 E-value=0.0072 Score=52.03 Aligned_cols=170 Identities=17% Similarity=0.155 Sum_probs=109.8
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHHHHHHHHH-hcchhhhhHHHHHHHHHHHHHHHHHHHHHhhc-chhhHHHHhhhhhH
Q 024137 41 SLIADLGVDAPVTQSAFAYFSLALVYGGVLLY-RRQRLRVAWYWYLLLGFVDVQGNFLVNKAYQF-SSITSVTLLDCCTI 118 (272)
Q Consensus 41 ~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~l~~~al~~-~~a~~a~~l~~~~P 118 (272)
-.+.++...+--.+++..++..+.--+++.-+ ...+.+-+.+.+...-......+.+-++|+++ ++...-.+..+..+
T Consensus 23 E~L~~~~pgsgNLITFaqFlFia~eGlif~skf~~~k~kiplk~Y~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRsgsl 102 (330)
T KOG1583|consen 23 ELLVRNEPGSGNLITFAQFLFIATEGLIFTSKFFTVKPKIPLKDYAITVAMFFIVNVTNNYALKFNIPMPLHIIFRSGSL 102 (330)
T ss_pred HHHHHhCCCCeeehHHHHHHHHHHhceeeeccccccCCCCchhhhheehheeeeeeeeccceeeecccceEEEEEecCcH
Confidence 44444332233456777776555444433211 11122334555555544444447777888885 56666667788999
Q ss_pred HHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhccccCCCCCC------CC---CC---chhHHHHHHHHHHHHHHHHHH
Q 024137 119 AWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGG------GG---SR---PLLGDVLVIAGTIFFATSNVG 186 (272)
Q Consensus 119 v~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~~~~~~~------~~---~~---~~~G~~~~l~a~~~~a~~~v~ 186 (272)
+.++++.+++.|+|-+.+|+.++.+..+|+++-...+..|... .+ ++ ...|..+...|.+.-|.-.++
T Consensus 103 l~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiy 182 (330)
T KOG1583|consen 103 LANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRSKLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIY 182 (330)
T ss_pred HHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhhhhcccccCcccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999876654322111 01 11 157888888888888888888
Q ss_pred HhhhccC--CChHHHHHHHHHHHHHH
Q 024137 187 EEFFVKK--KDRVEVVCMIGVYGLLV 210 (272)
Q Consensus 187 ~k~~~~~--~~~~~~~~~~~~~g~i~ 210 (272)
+++..++ .++.+.+.+.-......
T Consensus 183 qE~~Y~kyGKh~~EalFytH~LsLP~ 208 (330)
T KOG1583|consen 183 QETTYQKYGKHWKEALFYTHFLSLPL 208 (330)
T ss_pred HHHHHHHhcCChHHHHHHHHHhccch
Confidence 8866554 56777777766544333
No 76
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=96.16 E-value=0.071 Score=46.64 Aligned_cols=136 Identities=14% Similarity=0.045 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhcc---------hhhhhHHHHHHHH
Q 024137 18 RTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQ---------RLRVAWYWYLLLG 88 (272)
Q Consensus 18 ~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~---------~~~~~~~~~~~~g 88 (272)
|...|+.+...--++=+.+......+.++-..++..+.+.--+...+.-...+...+. ..++-++.+++.+
T Consensus 169 ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s 248 (327)
T KOG1581|consen 169 NSPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYS 248 (327)
T ss_pred CchHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHH
Confidence 3344544433333333344444455554556778887776555555544444332221 1123378899999
Q ss_pred HHHHHHHHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhcc
Q 024137 89 FVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLL 153 (272)
Q Consensus 89 ~~~~~~~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~ 153 (272)
.++..++.+.++-++.-++-+-+.+..+--+++++++.+.++.+++..||.|+.+.+.|+.+=..
T Consensus 249 ~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~ 313 (327)
T KOG1581|consen 249 TCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEIL 313 (327)
T ss_pred HhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHH
Confidence 99999988888888888888888888899999999999999999999999999999998877544
No 77
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=96.05 E-value=0.1 Score=40.85 Aligned_cols=54 Identities=20% Similarity=0.221 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcc-------CCChHHHHHHHHHHHHHHHHHHHHHhhccc
Q 024137 169 GDVLVIAGTIFFATSNVGEEFFVK-------KKDRVEVVCMIGVYGLLVSAVQLSILELKS 222 (272)
Q Consensus 169 G~~~~l~a~~~~a~~~v~~k~~~~-------~~~~~~~~~~~~~~g~i~~~i~~~~~~~~~ 222 (272)
|.++++.|.++.|++.++.|+..+ +.++.+...+....+.+.++++....|.+.
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~ 61 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQ 61 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 678999999999999999998743 468999999999999999875556666544
No 78
>PRK13499 rhamnose-proton symporter; Provisional
Probab=95.97 E-value=0.32 Score=43.90 Aligned_cols=138 Identities=14% Similarity=0.039 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhcCCCChHHHHHHHHH---HHHHHHH-HHHH---Hhcchh---
Q 024137 15 VTLRTLYLLFLGQLVSFTLALMSFT-------SSLIADLGVDAPVTQSAFAYF---SLALVYG-GVLL---YRRQRL--- 77 (272)
Q Consensus 15 ~~~~~~~~~~~~~~~a~~~~~~~~~-------~~~l~~~~~~~p~~~~~~R~~---~a~~~l~-~~~~---~~~~~~--- 77 (272)
++++..||+...++..+..+...+. ..... ..+.+|.....-.+. .+.++.- .++. +++++.
T Consensus 168 ~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~-~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~ 246 (345)
T PRK13499 168 EEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAA-ALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLK 246 (345)
T ss_pred cccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhh-hcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccc
Confidence 4578899999999999888777632 22211 134455554444443 3333332 2222 121211
Q ss_pred --h----hhHHHH----HHHHHHHHHHHHHHHHHhhcchhhHHHH---hh-hhhHHHHHHHHHHHhcccch------hhH
Q 024137 78 --R----VAWYWY----LLLGFVDVQGNFLVNKAYQFSSITSVTL---LD-CCTIAWAIVLTWLFLGTRYS------LWQ 137 (272)
Q Consensus 78 --~----~~~~~~----~~~g~~~~~~~~l~~~al~~~~a~~a~~---l~-~~~Pv~~~lls~~~~~er~s------~~~ 137 (272)
+ +.+.+- .+.|++....+.++..+-+..+.+.+.. +. ++..++..+-.. ++||+=+ +.-
T Consensus 247 ~~~~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l 325 (345)
T PRK13499 247 ADFSLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVL 325 (345)
T ss_pred hhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHH
Confidence 1 112233 4555555555777777777765544433 54 566677777777 5999877 556
Q ss_pred HHHHHHHHhhhhhhccc
Q 024137 138 LLGAALCVLGLGLVLLS 154 (272)
Q Consensus 138 ~~gi~l~~~Gv~ll~~~ 154 (272)
++|+++.+.|..++...
T Consensus 326 ~~G~vliI~g~~lig~~ 342 (345)
T PRK13499 326 SLGCVVIILAANIVGLG 342 (345)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 78888888888887654
No 79
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=95.76 E-value=0.17 Score=42.64 Aligned_cols=86 Identities=17% Similarity=0.132 Sum_probs=55.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhccccC--------------------CCCCCCCCCchh
Q 024137 109 SVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDA--------------------GGDGGGGSRPLL 168 (272)
Q Consensus 109 ~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~~--------------------~~~~~~~~~~~~ 168 (272)
......+..++++++....+.+||.+..|+++.++...|+......+. .++.....+...
T Consensus 6 a~~~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~g~~~~ 85 (222)
T TIGR00803 6 IHIIFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMFGNPVV 85 (222)
T ss_pred chHHHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccccccccHHH
Confidence 344455677777777777777777777777777777777664222211 000011123467
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCC
Q 024137 169 GDVLVIAGTIFFATSNVGEEFFVKKK 194 (272)
Q Consensus 169 G~~~~l~a~~~~a~~~v~~k~~~~~~ 194 (272)
|....+.+..+-++..++.++..|+.
T Consensus 86 g~~~~l~a~~~~~~~~~y~e~~~k~~ 111 (222)
T TIGR00803 86 GLSAVLSALLSSGFAGVYFEKILKDG 111 (222)
T ss_pred HHHHHHHHHHHHhhhHHHHHHcccCC
Confidence 88888888888889999999876654
No 80
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=95.63 E-value=0.029 Score=41.93 Aligned_cols=79 Identities=20% Similarity=0.166 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhhhccCCChHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHhhHHHHHHhh
Q 024137 178 IFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILELKSLESVEWSTNILLGFAGYAASSFMFYTLAPFVLKVI 257 (272)
Q Consensus 178 ~~~a~~~v~~k~~~~~~~~~~~~~~~~~~g~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~k~~ 257 (272)
++||.+.+..|+..++.|+.....+....+.+ +.+.....+..+....+........+.+. ++....+.++...+|+.
T Consensus 1 ~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~ 78 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKKISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGL-LGTALAYLLYFYALKYI 78 (126)
T ss_pred ceeeeHHHHHHHHhccCCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhc-cceehHHHHHHHHHHhc
Confidence 47899999999999999999999999999987 54333333332212222222222222222 33455666677778886
Q ss_pred h
Q 024137 258 L 258 (272)
Q Consensus 258 ~ 258 (272)
+
T Consensus 79 ~ 79 (126)
T PF00892_consen 79 S 79 (126)
T ss_pred c
Confidence 5
No 81
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=95.07 E-value=0.22 Score=42.16 Aligned_cols=75 Identities=16% Similarity=0.240 Sum_probs=65.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhccc
Q 024137 80 AWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLS 154 (272)
Q Consensus 80 ~~~~~~~~g~~~~~~~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~ 154 (272)
.++.+.+.++.+..++++.+.-..+-++-.-+++..+--+|+.+.|.++++..++.+||+|..+.+.|...=..+
T Consensus 240 ~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~~ 314 (337)
T KOG1580|consen 240 VFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVVD 314 (337)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhhc
Confidence 366778888877777999999999999999999999999999999999999999999999999999887664433
No 82
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.05 E-value=0.016 Score=50.96 Aligned_cols=71 Identities=24% Similarity=0.428 Sum_probs=62.8
Q ss_pred HHHHHHHHHH-HHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhcccc
Q 024137 85 LLLGFVDVQG-NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (272)
Q Consensus 85 ~~~g~~~~~~-~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~ 155 (272)
+..|.+.... ...-+.|+.+.|++..+.+-++..+..++++..++|||++....+|..++++|-..++.+.
T Consensus 67 Ww~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~ha 138 (335)
T KOG2922|consen 67 WWAGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHA 138 (335)
T ss_pred HHHHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEec
Confidence 3455555555 8888899999999999999999999999999999999999999999999999999987765
No 83
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=94.32 E-value=1.5 Score=39.37 Aligned_cols=168 Identities=12% Similarity=0.116 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHH----Hh------cchhhhhHHHHHHH
Q 024137 18 RTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLL----YR------RQRLRVAWYWYLLL 87 (272)
Q Consensus 18 ~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~----~~------~~~~~~~~~~~~~~ 87 (272)
+...|+++-.+.+++-++...=-|+..+ .+-...-....+. +-+..|.+. .. +......+....+.
T Consensus 4 ~ii~Gii~h~iGg~~~~sfy~P~kkvk~---WsWEs~Wlv~gi~-swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~ 79 (344)
T PF06379_consen 4 AIILGIIFHAIGGFASGSFYVPFKKVKG---WSWESYWLVQGIF-SWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLF 79 (344)
T ss_pred hHHHHHHHHHHHHHHhhhhccchhhcCC---ccHHHHHHHHHHH-HHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHH
Confidence 4566777777777766655555555542 2222221112222 222333322 11 01112235566788
Q ss_pred HHHHHHHHHHHHHHhhcchhhHHHH-hhhhhHHHHHHHHHHHhc-------ccchhhHHHHHHHHHhhhhhhccccCCCC
Q 024137 88 GFVDVQGNFLVNKAYQFSSITSVTL-LDCCTIAWAIVLTWLFLG-------TRYSLWQLLGAALCVLGLGLVLLSDAGGD 159 (272)
Q Consensus 88 g~~~~~~~~l~~~al~~~~a~~a~~-l~~~~Pv~~~lls~~~~~-------er~s~~~~~gi~l~~~Gv~ll~~~~~~~~ 159 (272)
|++.......|=.+++|...+...- ...+.-.+-.++-.++.+ ++-....++|+.++++|+++....+..++
T Consensus 80 G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~Ke 159 (344)
T PF06379_consen 80 GVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSMKE 159 (344)
T ss_pred HHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHhhh
Confidence 8888777888889999998888664 456777777676555433 33345788999999999999866543111
Q ss_pred -----CCCCCCchhHHHHHHHHHHHHHHHHHHHhh
Q 024137 160 -----GGGGSRPLLGDVLVIAGTIFFATSNVGEEF 189 (272)
Q Consensus 160 -----~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~ 189 (272)
+..+.+..+|.+.++.+++.-|+.+.-.+.
T Consensus 160 ~~~~~~~~efn~~kGl~iAv~sGv~Sa~fn~g~~a 194 (344)
T PF06379_consen 160 KELGEEAKEFNFKKGLIIAVLSGVMSACFNFGLDA 194 (344)
T ss_pred hhhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHc
Confidence 111223469999999999988888876654
No 84
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=94.25 E-value=1.9 Score=37.05 Aligned_cols=127 Identities=20% Similarity=0.191 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHH-Hhcchhh-----hhH-HHHHHHH
Q 024137 16 TLRTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLL-YRRQRLR-----VAW-YWYLLLG 88 (272)
Q Consensus 16 ~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~-~~~~~~~-----~~~-~~~~~~g 88 (272)
..+...|++.....+++-+..+...-++.|.++.+.......=+..+.++.+.... ..+.... ..+ ...+..-
T Consensus 109 ~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f~G~~~~~~~~i 188 (244)
T PF04142_consen 109 NQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFFHGYSWWVWIVI 188 (244)
T ss_pred cchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCchhhcchHHHHHH
Confidence 34678899888888888888888887777655555555444334444444433332 2221111 111 1122222
Q ss_pred HHHHHHHHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHH
Q 024137 89 FVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAA 142 (272)
Q Consensus 89 ~~~~~~~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~ 142 (272)
+.....-.+.-.-++|.+.-.=..-.+...+.+.+++..+++.+++....+|..
T Consensus 189 ~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~ 242 (244)
T PF04142_consen 189 FLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAA 242 (244)
T ss_pred HHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhhee
Confidence 223333445556788888877777788899999999999999999998887764
No 85
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=93.48 E-value=0.5 Score=40.95 Aligned_cols=144 Identities=12% Similarity=0.099 Sum_probs=89.2
Q ss_pred hhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhcchh-------hhhH--
Q 024137 12 RSHVTLRT-LYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQRL-------RVAW-- 81 (272)
Q Consensus 12 ~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~-------~~~~-- 81 (272)
++|+++|+ .+|+.+.-.+-++=+..+=..-+..+....+...+.++-+.++.+.++......+... ..++
T Consensus 180 Ds~~sPNF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~t 259 (367)
T KOG1582|consen 180 DSQTSPNFNLIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRT 259 (367)
T ss_pred ccccCCCcceeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhH
Confidence 34556666 5666554444444444444444444444445566778888888777665544332211 1122
Q ss_pred -HHHHHHHHHHHHHHHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhcccc
Q 024137 82 -YWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (272)
Q Consensus 82 -~~~~~~g~~~~~~~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~ 155 (272)
....+.+..+..+......=.+.-++..++.+...---.+.++|+++|.+..+.+-.-+..+.+.|+.+-..++
T Consensus 260 yGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 260 YGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred HHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence 22333333333332222222334477778888888888999999999999999999999999999999988776
No 86
>PRK02237 hypothetical protein; Provisional
Probab=93.45 E-value=2 Score=31.84 Aligned_cols=54 Identities=22% Similarity=0.504 Sum_probs=41.5
Q ss_pred hhc-chhhHHHHhh-hhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhcccc
Q 024137 102 YQF-SSITSVTLLD-CCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (272)
Q Consensus 102 l~~-~~a~~a~~l~-~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~ 155 (272)
+|- .+.+.+-.-+ ....+.+.+..+.+-|+||++..++|..++++|+.++.+.+
T Consensus 52 l~p~~~~GRvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~p 107 (109)
T PRK02237 52 LQPDAAFGRVYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAP 107 (109)
T ss_pred cCCchhhhhHHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecC
Confidence 554 4455555433 56666777888889999999999999999999999986643
No 87
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.89 E-value=1.2 Score=39.36 Aligned_cols=136 Identities=10% Similarity=-0.026 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhc--c-------hhh--hhHHHHHHHH
Q 024137 20 LYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRR--Q-------RLR--VAWYWYLLLG 88 (272)
Q Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~--~-------~~~--~~~~~~~~~g 88 (272)
.+|..+.....+..+......|+-.+.....-..+.++.-+.+.+.+........ + ... ..+-...+.+
T Consensus 156 ~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lSc 235 (314)
T KOG1444|consen 156 LRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSC 235 (314)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHH
Confidence 3456666666555555555555554444444455566665555544433321111 1 111 1144566777
Q ss_pred HHHHHHHHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhcccc
Q 024137 89 FVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (272)
Q Consensus 89 ~~~~~~~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~ 155 (272)
+++...+++-++..++.++...++.-...-..+.+...++.+++.++...+|+.+++.|-.+-....
T Consensus 236 v~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~ 302 (314)
T KOG1444|consen 236 VMGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYAT 302 (314)
T ss_pred HHHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhh
Confidence 7788889999999999999998888877777777778888889999999999999999988765543
No 88
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=91.95 E-value=1.6 Score=32.21 Aligned_cols=55 Identities=25% Similarity=0.542 Sum_probs=43.3
Q ss_pred HhhcchhhHHHHh-hhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhcccc
Q 024137 101 AYQFSSITSVTLL-DCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (272)
Q Consensus 101 al~~~~a~~a~~l-~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~ 155 (272)
.+|-.+.+.+-.- -....+.+.+..+.+-|+||++..++|..++++|+.++.+.+
T Consensus 50 Tl~p~~fGRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~P 105 (107)
T PF02694_consen 50 TLQPAAFGRVYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAP 105 (107)
T ss_pred hcCcccchhHHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecC
Confidence 3555556665543 356677788888889999999999999999999999998754
No 89
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=90.58 E-value=8.5 Score=34.12 Aligned_cols=132 Identities=17% Similarity=0.151 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc---CCCChHHHHHHHH-HHHHHHHHHHHHHhcch-------hh-h----hHH-
Q 024137 20 LYLLFLGQLVSFTLALMSFTSSLIADL---GVDAPVTQSAFAY-FSLALVYGGVLLYRRQR-------LR-V----AWY- 82 (272)
Q Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~~l~~~---~~~~p~~~~~~R~-~~a~~~l~~~~~~~~~~-------~~-~----~~~- 82 (272)
..|-.+...+.++-+.-+.+++++.++ +..+|....+.-- .+...++...+..++.. ++ . .++
T Consensus 163 i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv 242 (349)
T KOG1443|consen 163 IEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRV 242 (349)
T ss_pred ehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHH
Confidence 345555666666666667777777643 2345665544332 33333222223334321 11 1 122
Q ss_pred --HHHHHHHHHHHHHHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhh
Q 024137 83 --WYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLV 151 (272)
Q Consensus 83 --~~~~~g~~~~~~~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll 151 (272)
...+.|.+.+..-...+.=+..++.-+.++..-..=+.+.+++.++.+|+++..+|.|..++..|+..=
T Consensus 243 ~g~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 243 IGLISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence 222223333333334455566777777777666778889999999999999999999999999998775
No 90
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=89.67 E-value=0.21 Score=42.55 Aligned_cols=66 Identities=15% Similarity=0.157 Sum_probs=55.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHH
Q 024137 77 LRVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAA 142 (272)
Q Consensus 77 ~~~~~~~~~~~g~~~~~~~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~ 142 (272)
..+.-..-.+.|+....+|.+++.|-+....+++=.+..+..+...+-..+++|||=+++++..+.
T Consensus 205 ~~K~t~~nii~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~ 270 (288)
T COG4975 205 FNKYTWLNIIPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVI 270 (288)
T ss_pred hHHHHHHHHhhHHHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhh
Confidence 334445678899988888999999999888888778888888999999999999999999876544
No 91
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=88.15 E-value=4.8 Score=31.32 Aligned_cols=51 Identities=12% Similarity=-0.002 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCC-hHHHHHHHHHHHHHHHHHHHHHhhc
Q 024137 170 DVLVIAGTIFFATSNVGEEFFVKKKD-RVEVVCMIGVYGLLVSAVQLSILEL 220 (272)
Q Consensus 170 ~~~~l~a~~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~g~i~~~i~~~~~~~ 220 (272)
.++++.++..-+....++.+..++.+ |.......+..|.+.+.+.....++
T Consensus 3 ~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~ 54 (138)
T PF04657_consen 3 ILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGR 54 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 57788999999999999999877765 9999999999999988754544444
No 92
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=87.73 E-value=2.9 Score=35.33 Aligned_cols=104 Identities=9% Similarity=0.080 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--hcch------hhhh-HHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHhhhhhHHHHH
Q 024137 52 VTQSAFAYFSLALVYGGVLLY--RRQR------LRVA-WYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAI 122 (272)
Q Consensus 52 ~~~~~~R~~~a~~~l~~~~~~--~~~~------~~~~-~~~~~~~g~~~~~~~~l~~~al~~~~a~~a~~l~~~~Pv~~~ 122 (272)
....++.-+++.+++..+-.. .|.+ .+.+ .....+.|+...+..++--+.++.++....+++-.+.-.-.+
T Consensus 186 ~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKlp~a 265 (309)
T COG5070 186 FDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIA 265 (309)
T ss_pred hhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhChHH
Confidence 344566767777666544322 2221 1222 334566666666668888888999999999999888888888
Q ss_pred HHHHHHhcccchhhHHHHHHHHHhhhhhhcccc
Q 024137 123 VLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (272)
Q Consensus 123 lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~ 155 (272)
+-+.++++|..+...+.++.+++...++-....
T Consensus 266 laGlvffdap~nf~si~sillGflsg~iYavak 298 (309)
T COG5070 266 LAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAK 298 (309)
T ss_pred HhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999998888887766655443
No 93
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=87.59 E-value=9.5 Score=33.46 Aligned_cols=138 Identities=16% Similarity=0.088 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHH----HH-hcchh-------hhhH
Q 024137 14 HVTLRTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVL----LY-RRQRL-------RVAW 81 (272)
Q Consensus 14 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~----~~-~~~~~-------~~~~ 81 (272)
+|.++...|.++.+++.+..+.--..-.+..++..++|...+.+.-+.+..++.... .. ..+.. ..+|
T Consensus 169 ~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~ 248 (372)
T KOG3912|consen 169 TDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDW 248 (372)
T ss_pred cccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhH
Confidence 577888999999998888888776666555556788999998887766543332221 11 11000 1111
Q ss_pred H------------HHHHHHHHHHHH--HHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhh
Q 024137 82 Y------------WYLLLGFVDVQG--NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLG 147 (272)
Q Consensus 82 ~------------~~~~~g~~~~~~--~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~G 147 (272)
. .+...|..-..+ |+.-..--++.++++=.++...-..+.=+++.....|+....|+.|..+-+.|
T Consensus 249 ~~~~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~G 328 (372)
T KOG3912|consen 249 GDAFAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMG 328 (372)
T ss_pred HHHHHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 122222222122 22222223456777777888777777777888888999999999999999999
Q ss_pred hhhh
Q 024137 148 LGLV 151 (272)
Q Consensus 148 v~ll 151 (272)
+++-
T Consensus 329 i~lY 332 (372)
T KOG3912|consen 329 IILY 332 (372)
T ss_pred HHHH
Confidence 8874
No 94
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=85.34 E-value=7.3 Score=34.06 Aligned_cols=138 Identities=14% Similarity=0.033 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHH---Hhcchh-----------hhhH
Q 024137 16 TLRTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLL---YRRQRL-----------RVAW 81 (272)
Q Consensus 16 ~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~---~~~~~~-----------~~~~ 81 (272)
......|+.+..++-+.-+-++.......++.+-+|-...++-..+..+..+.... .++... ....
T Consensus 159 ~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~~v 238 (330)
T KOG1583|consen 159 FFWWLIGIALLVFALLLSAYMGIYQETTYQKYGKHWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGFKV 238 (330)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccCccc
Confidence 34667888888888888888888887766554556777778777776655432211 011000 0011
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh----cchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhcc
Q 024137 82 YWYLLLGFVDVQGNFLVNKAYQ----FSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLL 153 (272)
Q Consensus 82 ~~~~~~g~~~~~~~~l~~~al~----~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~ 153 (272)
+.....-+.+...++....++. .+++-+++++..+--++..++|.+.++...+++.|+|..+.++|.++...
T Consensus 239 P~~~~yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~ 314 (330)
T KOG1583|consen 239 PSMWVYLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFAN 314 (330)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 1122222223333444444433 34555566777888999999999999999999999999999999988754
No 95
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.33 E-value=1.6 Score=37.99 Aligned_cols=135 Identities=15% Similarity=0.143 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhcc--------hh-h-hhHHHHHHHH
Q 024137 19 TLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQ--------RL-R-VAWYWYLLLG 88 (272)
Q Consensus 19 ~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~--------~~-~-~~~~~~~~~g 88 (272)
-++|+++|+.+.+..+..++..|+....-+..-+.++++.-+.+.++.+|.+...+. +. . +-|....+.|
T Consensus 183 s~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsg 262 (347)
T KOG1442|consen 183 SWIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSG 262 (347)
T ss_pred chhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHH
Confidence 478999999999999999998886654334456677888888888888887765432 11 1 1133344555
Q ss_pred HHHHHHHHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhcc
Q 024137 89 FVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLL 153 (272)
Q Consensus 89 ~~~~~~~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~ 153 (272)
++++..++.-.+=.+-+++-+--+--.-...-=.+++..+++|.-+...|-+-++.+.|-.+-.+
T Consensus 263 lfgF~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~ 327 (347)
T KOG1442|consen 263 LFGFAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTL 327 (347)
T ss_pred HHHHHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHH
Confidence 65555543222222233332222212223333457788899999999999887777777666544
No 96
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=80.45 E-value=21 Score=26.33 Aligned_cols=55 Identities=24% Similarity=0.451 Sum_probs=40.3
Q ss_pred Hhhcch-hhHHHH-hhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhcccc
Q 024137 101 AYQFSS-ITSVTL-LDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (272)
Q Consensus 101 al~~~~-a~~a~~-l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~ 155 (272)
.+|+.+ .+.+-. --......+.+..++.=|.||++..|.|..++++|+.++.+.+
T Consensus 50 T~~~~~a~GRvYAAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~p 106 (109)
T COG1742 50 TLQPAAAFGRVYAAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGP 106 (109)
T ss_pred HcCCchhhhhHHHHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCC
Confidence 344443 444433 2345666677777888899999999999999999999887654
No 97
>PF07698 7TM-7TMR_HD: 7TM receptor with intracellular HD hydrolase; InterPro: IPR011621 These bacterial 7TM receptor proteins have an intracellular domain IPR006674 from INTERPRO. This entry corresponds to the 7 helix transmembrane domain. These proteins also contain an N-terminal extracellular domain.
Probab=74.42 E-value=45 Score=27.08 Aligned_cols=74 Identities=14% Similarity=0.207 Sum_probs=39.2
Q ss_pred HHHHhhhccCCChHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHhhHHHHHHhhh
Q 024137 184 NVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILELKSLESVEWSTNILLGFAGYAASSFMFYTLAPFVLKVIL 258 (272)
Q Consensus 184 ~v~~k~~~~~~~~~~~~~~~~~~g~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~k~~~ 258 (272)
....||..++.+-...-.+......+..+ .....++++.+..+..........+..++....+.+.|..++..+
T Consensus 118 ~~~~~~~~~R~~~i~ag~~v~l~~~~~~l-~~~l~~~~~~~~~~~~~~~~~~~~~g~ls~il~~gllPl~E~~F~ 191 (194)
T PF07698_consen 118 IFSVRRIRSRSDIIKAGLLVGLVNALMIL-ALGLIQGSSFSWQEILSSLIFAFINGILSGILVLGLLPLFERLFG 191 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33445554556666665555555555543 333343333221222333344445555666777788888887644
No 98
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=70.71 E-value=12 Score=27.61 Aligned_cols=68 Identities=21% Similarity=0.243 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchhhHHHHh-hhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhh
Q 024137 84 YLLLGFVDVQGNFLVNKAYQFSSITSVTLL-DCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLV 151 (272)
Q Consensus 84 ~~~~g~~~~~~~~l~~~al~~~~a~~a~~l-~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll 151 (272)
+.+.=+++-.+..+|+.-+++++-+.+..+ +++.-.|+.+....+-.|-..++...|..+...|+.+.
T Consensus 55 Y~iPFllNqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 55 YLIPFLLNQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLC 123 (125)
T ss_pred HHHHHHHHHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhe
Confidence 333334567778889999999999999876 46677788888876444455577788888888887654
No 99
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=66.24 E-value=87 Score=27.08 Aligned_cols=124 Identities=13% Similarity=-0.002 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 024137 26 GQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQRLRVAWYWYLLLGFVDVQGNFLVNKAYQFS 105 (272)
Q Consensus 26 ~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~al~~~ 105 (272)
..++++++++...=.|+.. .-|++...++-.....+.-+.....+..+ +-++.-++-|.+...+|.+-.-.++..
T Consensus 5 ~~va~~~fGs~~vPvK~~~---~gDg~~fQw~~~~~i~~~g~~v~~~~~~p--~f~p~amlgG~lW~~gN~~~vpii~~i 79 (254)
T PF07857_consen 5 CIVAVLFFGSNFVPVKKFD---TGDGFFFQWVMCSGIFLVGLVVNLILGFP--PFYPWAMLGGALWATGNILVVPIIKTI 79 (254)
T ss_pred HHHHHHHhcccceeeEecc---CCCcHHHHHHHHHHHHHHHHHHHHhcCCC--cceeHHHhhhhhhhcCceeehhHhhhh
Confidence 3344444444433344443 33566655544333222222222222211 123345566677777799989999999
Q ss_pred hhhHHHHhhhh-hHHHHHHHHHH-Hhcccc-----hhhHHHHHHHHHhhhhhhccc
Q 024137 106 SITSVTLLDCC-TIAWAIVLTWL-FLGTRY-----SLWQLLGAALCVLGLGLVLLS 154 (272)
Q Consensus 106 ~a~~a~~l~~~-~Pv~~~lls~~-~~~er~-----s~~~~~gi~l~~~Gv~ll~~~ 154 (272)
..+.+.++-++ .-+..-..+.+ +|++++ ...+++|++++++|..+...-
T Consensus 80 GLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fi 135 (254)
T PF07857_consen 80 GLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFI 135 (254)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeee
Confidence 99999988655 44444444443 454322 356889999999998887664
No 100
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=53.19 E-value=91 Score=23.09 Aligned_cols=51 Identities=14% Similarity=0.180 Sum_probs=33.3
Q ss_pred HhhcchhhHHHHhh-hhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhh
Q 024137 101 AYQFSSITSVTLLD-CCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLV 151 (272)
Q Consensus 101 al~~~~a~~a~~l~-~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll 151 (272)
+.+.-+.++--++. ...-..-..++.+++||++++....|..+.+.++..+
T Consensus 55 G~~~~s~~QLKi~QEvitL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~fi 106 (108)
T PF04342_consen 55 GYQTFSLAQLKIIQEVITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAVYFI 106 (108)
T ss_pred hccccCHHHHHHHHHHHhhheeHHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence 44444444444442 2333334567788999999999999988887776544
No 101
>COG4657 RnfA Predicted NADH:ubiquinone oxidoreductase, subunit RnfA [Energy production and conversion]
Probab=51.48 E-value=63 Score=25.95 Aligned_cols=81 Identities=20% Similarity=0.174 Sum_probs=48.1
Q ss_pred HHHHHhcccchhhHHHHHH-------HHHhhhhhhccccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhhhccC---
Q 024137 124 LTWLFLGTRYSLWQLLGAA-------LCVLGLGLVLLSDAGGDGGGGSRPLLGDVLVIAGTIFFATSNVGEEFFVKK--- 193 (272)
Q Consensus 124 ls~~~~~er~s~~~~~gi~-------l~~~Gv~ll~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~--- 193 (272)
.+.++.|..|+..+..|+. +++.|+.++...+ +.+......+++.+++.|+...++.....++
T Consensus 88 ~Em~v~KtsP~LYr~LGIfLPLITTNCaVLgvaLln~~~-------~~~f~qsv~~gf~a~lGfslvmvlfA~iRER~~~ 160 (193)
T COG4657 88 TEMVVRKTSPTLYRLLGIFLPLITTNCAVLGVALLNINE-------GHNFLQSVVYGFGAALGFSLVMVLFAAIRERLAL 160 (193)
T ss_pred HHHHHHccCHHHHHHHHHhhhhHhhchHHHHHHHHHhhh-------hhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHH
Confidence 3444555566666666654 3667888886544 2334567788888889888887776544333
Q ss_pred --CC-hHHHHHHHHHHHHHHH
Q 024137 194 --KD-RVEVVCMIGVYGLLVS 211 (272)
Q Consensus 194 --~~-~~~~~~~~~~~g~i~~ 211 (272)
.| |.+...+..+.+++..
T Consensus 161 advP~~frG~~ialitagLmS 181 (193)
T COG4657 161 ADVPAPFRGAAIALITAGLMS 181 (193)
T ss_pred hcCCCCCCCcchHHHHHHHHH
Confidence 22 3344444444455444
No 102
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=49.84 E-value=2e+02 Score=26.06 Aligned_cols=141 Identities=14% Similarity=0.060 Sum_probs=68.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H---HhhcCCCChHHHHHHHH----HHHHHHHHHHHHH---h-cch-
Q 024137 12 RSHVTLRTLYLLFLGQLVSFTLALMSFTSS---L---IADLGVDAPVTQSAFAY----FSLALVYGGVLLY---R-RQR- 76 (272)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~---l~~~~~~~p~~~~~~R~----~~a~~~l~~~~~~---~-~~~- 76 (272)
+..|++++-+|+++++++.+.-++.++--. - .+...+.+|+....--+ .-+.+.-+.++.. + |..
T Consensus 164 ~~~~efn~~kGl~iAv~sGv~Sa~fn~g~~ag~pi~~~a~a~G~~~l~~~l~~~vvv~~GGf~tN~~yc~~~l~~~k~~s 243 (344)
T PF06379_consen 164 EEAKEFNFKKGLIIAVLSGVMSACFNFGLDAGKPIHEAAVAAGVNPLYANLPVYVVVLWGGFITNLIYCLILLAKNKNWS 243 (344)
T ss_pred cchhhhhhhhhHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHcCCCcHHHhCchhhhhhhhHHHHHHHHHHHHHhhcCCCc
Confidence 446788999999999999887776655421 1 11223445655433222 2222333334332 1 211
Q ss_pred h-------hhhHHH-H---HHHHHHHHHHHHHHHHHhhcchh----hHHHHhhhhhHHHHHHHHHHHhcc------cchh
Q 024137 77 L-------RVAWYW-Y---LLLGFVDVQGNFLVNKAYQFSSI----TSVTLLDCCTIAWAIVLTWLFLGT------RYSL 135 (272)
Q Consensus 77 ~-------~~~~~~-~---~~~g~~~~~~~~l~~~al~~~~a----~~a~~l~~~~Pv~~~lls~~~~~e------r~s~ 135 (272)
. +..+.. + ++.|.+....+.+|-++-.+.+. ..-.+..++..++.-+... .+|| |.-+
T Consensus 244 ~~~d~~~~~~~~~~N~~~~aLaG~lWy~qfffYg~G~s~lg~~~~~~sW~i~ma~~vl~snvwGl-~lkEWKg~s~kt~~ 322 (344)
T PF06379_consen 244 WKGDYSVAKPPLLKNYLFCALAGVLWYSQFFFYGMGESKLGASGPFSSWAIHMALIVLFSNVWGL-ILKEWKGASKKTIR 322 (344)
T ss_pred cccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHH-HHHHhccCCcccHH
Confidence 0 111222 2 22333333333333334334432 2233445666666666554 5666 3334
Q ss_pred hHHHHHHHHHhhhhhhcc
Q 024137 136 WQLLGAALCVLGLGLVLL 153 (272)
Q Consensus 136 ~~~~gi~l~~~Gv~ll~~ 153 (272)
.-+.|+.+.+.++.++-.
T Consensus 323 vl~~G~~vlI~s~~ivG~ 340 (344)
T PF06379_consen 323 VLVLGIAVLILSVVIVGY 340 (344)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 456677776666666543
No 103
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.37 E-value=1.3e+02 Score=23.88 Aligned_cols=52 Identities=10% Similarity=0.004 Sum_probs=39.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhccCCC-hHHHHHHHHHHHHHHHHHHHHHh
Q 024137 167 LLGDVLVIAGTIFFATSNVGEEFFVKKKD-RVEVVCMIGVYGLLVSAVQLSIL 218 (272)
Q Consensus 167 ~~G~~~~l~a~~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~g~i~~~i~~~~~ 218 (272)
....+.+++++.+-...+-++.+..+..+ |.......+..|.+.+.+.....
T Consensus 4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~ 56 (150)
T COG3238 4 YLYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIK 56 (150)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHh
Confidence 35678888999999999999988866644 77778888888888886444443
No 104
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=44.83 E-value=2.6e+02 Score=25.86 Aligned_cols=55 Identities=11% Similarity=0.070 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHH----HHHH-HHHHHHHHHHHHHh
Q 024137 18 RTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQS----AFAY-FSLALVYGGVLLYR 73 (272)
Q Consensus 18 ~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~----~~R~-~~a~~~l~~~~~~~ 73 (272)
-...++.+|.-........++.-+.+.++ +.++.... +... -...-++.|.+..|
T Consensus 210 aW~vtLfmGlqS~~~Y~~~~WLP~ili~~-G~sa~~aG~llsl~~l~~~~~~ll~P~la~R 269 (395)
T COG2807 210 AWQVTLFMGLQSLLYYIVIGWLPAILIDR-GLSAAEAGSLLSLMQLAQLPTALLIPLLARR 269 (395)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHc-CCCHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568899999999999999999999864 44555444 2222 22233445555444
No 105
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=43.27 E-value=2.6e+02 Score=25.41 Aligned_cols=137 Identities=15% Similarity=0.129 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHH-HHHHHHHHHHHHHh-cchh--h---hhH-HHHHHHHH
Q 024137 18 RTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAY-FSLALVYGGVLLYR-RQRL--R---VAW-YWYLLLGF 89 (272)
Q Consensus 18 ~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~-~~a~~~l~~~~~~~-~~~~--~---~~~-~~~~~~g~ 89 (272)
+...|.......++.-+..+...-++.+.+.. +.++-=.|. ..+.++.+..++.. +.+. . ..| +..++.-+
T Consensus 180 n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~-s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gff~G~s~~vw~vVl 258 (345)
T KOG2234|consen 180 NPFLGLVAVLVACFLSGFAGVYFEKILKGSNV-SLWIRNIQLYFFGILFNLLTILLQDGEAINEYGFFYGYSSIVWLVVL 258 (345)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHHHHHHhhccccccccCCccccccHHHHHHHH
Confidence 55667666666655555556666555544443 443333333 34433333333221 1111 0 111 11111111
Q ss_pred HHHHHHHHHHHHhhcchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhcccc
Q 024137 90 VDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (272)
Q Consensus 90 ~~~~~~~l~~~al~~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~ 155 (272)
.+...-.+.-.=++|.+--.=..-.+...+++.+.+..+++.++|..-.+|+.+.+..+.+-...+
T Consensus 259 ~~a~gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P 324 (345)
T KOG2234|consen 259 LNAVGGLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYP 324 (345)
T ss_pred HHhccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCC
Confidence 111112222233445544444445567788899999999999999999999999998888876433
No 106
>PF09656 PGPGW: Putative transmembrane protein (PGPGW); InterPro: IPR019099 This entry represents proteins that contain three predicted transmembrane helices and an unusual motif with consensus sequence PGPGW.
Probab=43.25 E-value=82 Score=20.19 Aligned_cols=44 Identities=23% Similarity=0.264 Sum_probs=32.1
Q ss_pred hHHHHHHHHHhhhhhhccccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhhhc
Q 024137 136 WQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLLGDVLVIAGTIFFATSNVGEEFFV 191 (272)
Q Consensus 136 ~~~~gi~l~~~Gv~ll~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~ 191 (272)
...+|..+.++|++++..++ .|.+..+++....|...-..|+..
T Consensus 4 v~v~G~~lv~~Gii~~~lPG------------pG~l~i~~GL~iLa~ef~wArr~l 47 (53)
T PF09656_consen 4 VGVLGWVLVVAGIIMLPLPG------------PGLLVIFLGLAILATEFPWARRLL 47 (53)
T ss_pred hhhHHHHHHHHHHHhhcCCC------------CcHHHHHHHHHHHHHhhHHHHHHH
Confidence 35678888999999987665 356677777777777777777654
No 107
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=42.64 E-value=78 Score=28.02 Aligned_cols=61 Identities=23% Similarity=0.287 Sum_probs=44.6
Q ss_pred HHHHHHHhhcchhhHHHHhh-hhhHHHHHHHHHHHhcc--cchhhH----HHHHHHHHhhhhhhcccc
Q 024137 95 NFLVNKAYQFSSITSVTLLD-CCTIAWAIVLTWLFLGT--RYSLWQ----LLGAALCVLGLGLVLLSD 155 (272)
Q Consensus 95 ~~l~~~al~~~~a~~a~~l~-~~~Pv~~~lls~~~~~e--r~s~~~----~~gi~l~~~Gv~ll~~~~ 155 (272)
....+.|+++-++.....++ ...-..+.+-+.+++|| +.+..+ ..|..+.+.|+.++...+
T Consensus 227 ~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~~~~ 294 (300)
T PF05653_consen 227 LYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLSSSK 294 (300)
T ss_pred HHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheeeccC
Confidence 55678899999999888664 56677788888889997 444544 455667788888886554
No 108
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=42.33 E-value=8.3 Score=33.69 Aligned_cols=25 Identities=20% Similarity=0.193 Sum_probs=0.0
Q ss_pred HHHhccc-chhhHHHHHHHHHhhhhh
Q 024137 126 WLFLGTR-YSLWQLLGAALCVLGLGL 150 (272)
Q Consensus 126 ~~~~~er-~s~~~~~gi~l~~~Gv~l 150 (272)
..+||+| +-....+.+++.++-..+
T Consensus 69 ImlF~RrLLCPLGlLCiilimi~lLv 94 (381)
T PF05297_consen 69 IMLFKRRLLCPLGLLCIILIMIVLLV 94 (381)
T ss_dssp --------------------------
T ss_pred HHHHHHhhcCcchHHHHHHHHHHHHH
Confidence 3344544 456666666666544433
No 109
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=41.60 E-value=3e+02 Score=25.80 Aligned_cols=76 Identities=20% Similarity=0.024 Sum_probs=46.3
Q ss_pred HhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhccccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhhhc
Q 024137 112 LLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLLGDVLVIAGTIFFATSNVGEEFFV 191 (272)
Q Consensus 112 ~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~ 191 (272)
++.-..++.+..+-=++-|.|+++.|.+-++++++=..++...= ++|...+..+.+.|..|-+.-..+.+...
T Consensus 302 iLFI~LTF~~fflfE~~~~~~iHpiQY~LVGlAl~lFYlLLLSl-------SEhi~F~~AYliAa~a~i~Li~~Y~~~vl 374 (430)
T PF06123_consen 302 ILFIGLTFLAFFLFELLSKLRIHPIQYLLVGLALVLFYLLLLSL-------SEHIGFNLAYLIAALACIGLISLYLSSVL 374 (430)
T ss_pred HHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHH-------HhhhchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444456688999998865555544333332211 23444667888888888888888888876
Q ss_pred cCC
Q 024137 192 KKK 194 (272)
Q Consensus 192 ~~~ 194 (272)
|+.
T Consensus 375 ~~~ 377 (430)
T PF06123_consen 375 KSW 377 (430)
T ss_pred hcc
Confidence 663
No 110
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=39.98 E-value=3.5e+02 Score=25.97 Aligned_cols=45 Identities=18% Similarity=0.216 Sum_probs=31.4
Q ss_pred HHHhhhhhHHHHHHHHH----HHhc-----ccchhhHHHHHHHHHhhhhhhccc
Q 024137 110 VTLLDCCTIAWAIVLTW----LFLG-----TRYSLWQLLGAALCVLGLGLVLLS 154 (272)
Q Consensus 110 a~~l~~~~Pv~~~lls~----~~~~-----er~s~~~~~gi~l~~~Gv~ll~~~ 154 (272)
.+..++..|+++++++- ++.| ++++...-.|+++.+.|...+...
T Consensus 326 ~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~ 379 (498)
T COG3104 326 PAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILL 379 (498)
T ss_pred HHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHH
Confidence 45667888888877763 3333 348888888888888887776543
No 111
>PF08042 PqqA: PqqA family; InterPro: IPR011725 This entry describes a very small protein, coenzyme PQQ biosynthesis protein A, which is smaller than 25 amino acids in many species. It is proposed to serve as a peptide precursor of coenzyme pyrrolo-quinoline-quinone (PQQ), with Glu and Tyr of a conserved motif Glu-Xxx-Xxx-Xxx-Tyr becoming part of the product [].; GO: 0018189 pyrroloquinoline quinone biosynthetic process
Probab=36.43 E-value=18 Score=18.30 Aligned_cols=8 Identities=38% Similarity=0.862 Sum_probs=5.8
Q ss_pred CCCccCcc
Q 024137 1 MNWNAPIN 8 (272)
Q Consensus 1 ~~~~~~~~ 8 (272)
|.|.+|.-
T Consensus 1 M~W~~P~~ 8 (20)
T PF08042_consen 1 MAWTKPKF 8 (20)
T ss_pred CCccCCce
Confidence 67888864
No 112
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=36.14 E-value=72 Score=25.06 Aligned_cols=28 Identities=14% Similarity=0.044 Sum_probs=21.3
Q ss_pred HhhcchhhHHHHhhhhhHHHHHHHHHHH
Q 024137 101 AYQFSSITSVTLLDCCTIAWAIVLTWLF 128 (272)
Q Consensus 101 al~~~~a~~a~~l~~~~Pv~~~lls~~~ 128 (272)
++..-+.-.++.+.|..|+++.+++.++
T Consensus 68 Gi~EkslL~sA~LvYi~PL~~l~v~~~L 95 (150)
T COG3086 68 GIEEKSLLKSALLVYIFPLVGLFLGAIL 95 (150)
T ss_pred ccCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566678888899999998888764
No 113
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=35.11 E-value=3.3e+02 Score=24.36 Aligned_cols=95 Identities=14% Similarity=0.139 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCChHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHhhH
Q 024137 171 VLVIAGTIFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILELKSLESVEWSTNILLGFAGYAASSFMFYTLA 250 (272)
Q Consensus 171 ~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~g~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~ 250 (272)
-+++.+.+.-+++.-+..+...+..+..........+++ ..|..-....+ .. +.......+++.+=.| ....+
T Consensus 290 tFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l--~Lpilt~~vsP-~k-es~~~s~i~F~~~E~c---vGlfw 362 (454)
T KOG4332|consen 290 TFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAAL--LLPILTSSVSP-SK-ESPSESLIGFCLFEAC---VGLFW 362 (454)
T ss_pred HHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHH--HHHHHHhccCC-Cc-CCchHHHHHHHHHHHH---Hhhcc
Confidence 456777777777743333322344444433332222222 22444332111 11 2223334444433333 23556
Q ss_pred HHHHHhhh------hhhhhhhhhccCCC
Q 024137 251 PFVLKVIL------LFANCYLLIRFPLD 272 (272)
Q Consensus 251 ~~~~k~~~------~~~~~~~~~~~~~~ 272 (272)
|-++|+.. +...+.|--|.||+
T Consensus 363 PSimkmRsqyIPEearstimNfFRvPLn 390 (454)
T KOG4332|consen 363 PSIMKMRSQYIPEEARSTIMNFFRVPLN 390 (454)
T ss_pred hHHHHHHHhhCCHHHHhhhhhheechhh
Confidence 77788754 67888888888874
No 114
>PRK11715 inner membrane protein; Provisional
Probab=34.51 E-value=4e+02 Score=25.09 Aligned_cols=71 Identities=18% Similarity=-0.017 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhccccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhhhccCC
Q 024137 117 TIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLLGDVLVIAGTIFFATSNVGEEFFVKKK 194 (272)
Q Consensus 117 ~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~ 194 (272)
.++.+..+-=++-|.|+++.|.+-++++++=..++...= ++|...+..+.+.|+.|-..-..+.....++.
T Consensus 313 LTF~~fFlfE~~~~~~iHpiQYlLVGlAl~lFYLLLLSl-------SEHigF~~AYliAa~a~v~li~~Y~~~vl~~~ 383 (436)
T PRK11715 313 LTFAAFFLFELLKKLRIHPVQYLLVGLALVLFYLLLLSL-------SEHIGFTLAYLIAALACVLLIGFYLSAVLRSW 383 (436)
T ss_pred HHHHHHHHHHHhcCceecHHHHHHHHHHHHHHHHHHHHH-------HhhhchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 333333333345588999988865555544333333221 23444667788888888888888888776653
No 115
>PF03631 Virul_fac_BrkB: Virulence factor BrkB; InterPro: IPR017039 This entry represents the uncharacterised protein family UPF0761. It includes the E. coli gene product of yihY, and was previously thought to be a family of tRNA-processing ribonuclease BN proteins []. This has been shown to be incorrect [].; GO: 0004540 ribonuclease activity
Probab=33.88 E-value=2.9e+02 Score=23.36 Aligned_cols=12 Identities=8% Similarity=0.025 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHH
Q 024137 53 TQSAFAYFSLAL 64 (272)
Q Consensus 53 ~~~~~R~~~a~~ 64 (272)
.....|+.....
T Consensus 160 ~~~~~~~~~~~~ 171 (260)
T PF03631_consen 160 LWNLIRWLVSFL 171 (260)
T ss_pred HHHHHHHHHHHH
Confidence 356667754433
No 116
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=33.79 E-value=70 Score=24.45 Aligned_cols=44 Identities=20% Similarity=0.129 Sum_probs=26.7
Q ss_pred cchhhHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhh
Q 024137 104 FSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGL 148 (272)
Q Consensus 104 ~~~a~~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv 148 (272)
..+.-.++++.|..|++..++..++ ...+...+..+++.++.|.
T Consensus 64 ~~~~~~aa~l~Y~lPll~li~g~~l-~~~~~~~e~~~~l~~l~~l 107 (135)
T PF04246_consen 64 ESSLLKAAFLVYLLPLLALIAGAVL-GSYLGGSELWAILGGLLGL 107 (135)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 3345567788899999988887653 3444444544444444443
No 117
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=33.43 E-value=75 Score=25.15 Aligned_cols=27 Identities=19% Similarity=0.027 Sum_probs=19.8
Q ss_pred hhcchhhHHHHhhhhhHHHHHHHHHHH
Q 024137 102 YQFSSITSVTLLDCCTIAWAIVLTWLF 128 (272)
Q Consensus 102 l~~~~a~~a~~l~~~~Pv~~~lls~~~ 128 (272)
+...+.-.++.+.|..|++.++.+..+
T Consensus 69 i~e~~llkaa~lvYllPLl~li~ga~l 95 (154)
T PRK10862 69 IAEGSLLRSALLVYMTPLVGLFLGAAL 95 (154)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556667888899999988877554
No 118
>PF10951 DUF2776: Protein of unknown function (DUF2776); InterPro: IPR021240 This bacterial family of proteins has no known function.
Probab=28.52 E-value=4e+02 Score=23.67 Aligned_cols=21 Identities=29% Similarity=0.313 Sum_probs=15.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 024137 167 LLGDVLVIAGTIFFATSNVGE 187 (272)
Q Consensus 167 ~~G~~~~l~a~~~~a~~~v~~ 187 (272)
.+.-.+.-++++||..+++.+
T Consensus 320 vPARVL~GLGaICFTLFSIVS 340 (347)
T PF10951_consen 320 VPARVLVGLGAICFTLFSIVS 340 (347)
T ss_pred eehhHhhccchHHHHHHHHHH
Confidence 455577777888888887764
No 119
>PF01654 Bac_Ubq_Cox: Bacterial Cytochrome Ubiquinol Oxidase; InterPro: IPR002585 These proteins are cytochrome bd type terminal oxidases that catalyse quinol dependent, Na+ independent oxygen uptake []. Members of this family are integral membrane proteins and contain a protoheame IX centre B558. Cytochrome bd may play an important role in microaerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae, where it is expressed under all conditions that permit diazotrophy []. Subunit I binds a single b-haem, through ligands at His186 and Met393 (using P0ABJ9 from SWISSPROT numbering). In addition His19 is a ligand for the haem b found in subunit II (IPR003317 from INTERPRO).; GO: 0016020 membrane
Probab=27.64 E-value=5.2e+02 Score=24.28 Aligned_cols=38 Identities=18% Similarity=0.141 Sum_probs=20.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhccCCChHHHHHHHH
Q 024137 167 LLGDVLVIAGTIFFATSNVGEEFFVKKKDRVEVVCMIG 204 (272)
Q Consensus 167 ~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~ 204 (272)
..|...++++.+...+..-..-+...+..|..+.....
T Consensus 215 ~~~~~~~~i~~~~~~~~G~~~g~~v~~~QP~K~AA~Eg 252 (436)
T PF01654_consen 215 KIGLVIGLIAAILQPFSGDWQGREVAEYQPMKLAAMEG 252 (436)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHhCChHHHhhhc
Confidence 45666666666665554444444444556666655543
No 120
>PRK11380 hypothetical protein; Provisional
Probab=24.23 E-value=5.5e+02 Score=23.36 Aligned_cols=53 Identities=11% Similarity=0.179 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cCCCChHHHHHHHHHHHHHHHH
Q 024137 15 VTLRTLYLLFLGQLVSFTLALMSFTSSLIAD---LGVDAPVTQSAFAYFSLALVYG 67 (272)
Q Consensus 15 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~---~~~~~p~~~~~~R~~~a~~~l~ 67 (272)
|+++......++.-..+..+...+++....+ ..+..|+..+..-++.+...+.
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~ 87 (353)
T PRK11380 32 KENKAMLLCKWGFYLTCVVAVMFVFAAITSNGLNERGYLLLITAGCSFLYLLIMLG 87 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHHHH
Confidence 4444444444454444444555555555443 2444566555555444443333
No 121
>PF10754 DUF2569: Protein of unknown function (DUF2569); InterPro: IPR019690 This entry represents a protein that is conserved in bacteria. The function is not known, but several members are annotated as being YdgK or a homologue thereof and associated to the inner membrane. This signature also matches proteins that are described as transglutaminase-like enzymes, although this could not be confirmed.
Probab=22.41 E-value=3.3e+02 Score=21.22 Aligned_cols=26 Identities=0% Similarity=-0.056 Sum_probs=22.5
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhhh
Q 024137 165 RPLLGDVLVIAGTIFFATSNVGEEFF 190 (272)
Q Consensus 165 ~~~~G~~~~l~a~~~~a~~~v~~k~~ 190 (272)
....+.+-.+.++..|.-|...+||.
T Consensus 118 ~~i~~l~~~li~a~IwipYf~~S~RV 143 (149)
T PF10754_consen 118 EAIRELLRSLIAAAIWIPYFLRSKRV 143 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 34678899999999999999999986
No 122
>COG3952 Predicted membrane protein [Function unknown]
Probab=22.08 E-value=3.4e+02 Score=20.14 Aligned_cols=51 Identities=8% Similarity=0.025 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHH-HHHHHHHHHHHHHh
Q 024137 23 LFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAY-FSLALVYGGVLLYR 73 (272)
Q Consensus 23 ~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~-~~a~~~l~~~~~~~ 73 (272)
.++|-...+++++-.++.-+..++..-+..-..|+-+ +.++.+++.+..++
T Consensus 27 ~LiG~~g~~lFt~Rf~VQw~~se~a~rsv~P~~FW~~sllGg~l~L~Yfi~~ 78 (113)
T COG3952 27 KLIGFSGQLLFTGRFVVQWLASEHANRSVIPVLFWYFSLLGGLLLLSYFIRR 78 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhhHHHHHHHHHh
Confidence 3556666666666555544443322222222334433 44555555555444
No 123
>COG3965 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=22.06 E-value=5.4e+02 Score=22.56 Aligned_cols=103 Identities=15% Similarity=0.103 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhc--chhh-----hhHHHHHHHHHHHHHHHHHHHHHhhc
Q 024137 32 TLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRR--QRLR-----VAWYWYLLLGFVDVQGNFLVNKAYQF 104 (272)
Q Consensus 32 ~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~--~~~~-----~~~~~~~~~g~~~~~~~~l~~~al~~ 104 (272)
..+..+...+.+....+..|-.-..+-......+...++..+| +..+ .+-+.+...+.+.......|..|.-.
T Consensus 105 lyAlinAl~~l~dGGR~v~~~~ai~yt~~s~~~Ca~~~~~~~r~nrr~~s~lIald~kqW~Mst~lS~al~VaF~~a~~l 184 (314)
T COG3965 105 LYALINALGSLLDGGREVEPGHAIAYTLVSVTGCAAIAWKLRRLNRRLKSPLIALDTKQWLMSTCLSAALFVAFAAAWLL 184 (314)
T ss_pred HHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455566677776556777777777666655555554443333 2211 22444555555554444444444333
Q ss_pred chhhHHHHhhhhhHHHHHHHHHHHhcccch
Q 024137 105 SSITSVTLLDCCTIAWAIVLTWLFLGTRYS 134 (272)
Q Consensus 105 ~~a~~a~~l~~~~Pv~~~lls~~~~~er~s 134 (272)
.....+-+.-|.-|+..++...++.+-.+.
T Consensus 185 ~~T~~a~l~~Y~DPmvlaL~~~v~IplPlg 214 (314)
T COG3965 185 AGTKFAHLVVYADPMVLALVCLVFIPLPLG 214 (314)
T ss_pred ccCchhhhhcccCHHHHHHHHHheeeccHH
Confidence 333445556688899998888877655443
No 124
>PF11361 DUF3159: Protein of unknown function (DUF3159); InterPro: IPR016566 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are predicted to be integral membrane proteins (with several transmembrane segments).
Probab=21.29 E-value=4.7e+02 Score=21.48 Aligned_cols=76 Identities=14% Similarity=0.027 Sum_probs=42.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhccccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHh
Q 024137 109 SVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLLGDVLVIAGTIFFATSNVGEE 188 (272)
Q Consensus 109 ~a~~l~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k 188 (272)
..+++.+..--.....-.+.-||+++. -..|..-..++..+-...++ ..+.+..|.+.-.+.+..+....+..+
T Consensus 28 ~~aliaA~~~a~~~~v~RL~r~~~~~~-a~~gl~gV~i~a~~A~~tG~-----A~~~Fl~gi~~n~~~~~~~l~S~lvr~ 101 (187)
T PF11361_consen 28 TPALIAALAVAVVIVVWRLVRRESVQP-ALSGLFGVAISAAIAWRTGS-----AKDFFLPGIWTNAVYAVVFLVSVLVRW 101 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCccHH-HHHHHHHHHHHHHHHHHHCC-----hhhhhHHHHHHHHHHHHHHHHHHHHcC
Confidence 344444444444445556666777763 34444444444433333331 134567888888888888887776665
Q ss_pred hh
Q 024137 189 FF 190 (272)
Q Consensus 189 ~~ 190 (272)
..
T Consensus 102 Pl 103 (187)
T PF11361_consen 102 PL 103 (187)
T ss_pred Ch
Confidence 43
No 125
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=20.93 E-value=2.2e+02 Score=17.68 Aligned_cols=39 Identities=18% Similarity=0.372 Sum_probs=19.1
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024137 7 INSWWRSHVTLRTLYLLFLGQLVSFTLALMSFTSSLIAD 45 (272)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~ 45 (272)
++++++..++-+..+....|.+.-+++-..++++..+..
T Consensus 2 ~s~~~~~~~~f~~nk~a~~gl~il~~~vl~ai~~p~~~p 40 (56)
T PF12911_consen 2 RSPWKDAWRRFRRNKLAVIGLIILLILVLLAIFAPFISP 40 (56)
T ss_pred CCHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHcCC
Confidence 344433333333344444555555555556666666653
No 126
>CHL00196 psbY photosystem II protein Y; Provisional
Probab=20.26 E-value=1.5e+02 Score=17.40 Aligned_cols=20 Identities=15% Similarity=0.042 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 024137 169 GDVLVIAGTIFFATSNVGEE 188 (272)
Q Consensus 169 G~~~~l~a~~~~a~~~v~~k 188 (272)
=.++-++.+.+|+.|++..-
T Consensus 7 iVl~Pil~A~~Wa~fNIg~~ 26 (36)
T CHL00196 7 VIAAPVLAAASWALFNIGRL 26 (36)
T ss_pred HHHHHHHHHHHHHHHHhHHH
Confidence 35677889999999998543
Done!