Query 024137
Match_columns 272
No_of_seqs 141 out of 1807
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 03:02:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024137.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024137hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 98.7 1.6E-07 5.4E-12 69.7 10.4 70 86-155 34-105 (110)
2 2i68_A Protein EMRE; transmemb 98.5 2.8E-07 9.7E-12 70.8 8.4 70 86-155 34-105 (137)
3 2hac_A T-cell surface glycopro 13.2 1.1E+02 0.0036 16.8 1.6 22 115-136 10-31 (33)
4 3l1l_A Arginine/agmatine antip 8.6 3.9E+02 0.013 22.9 4.8 10 19-28 323-332 (445)
5 3arc_T Photosystem II reaction 7.4 2.1E+02 0.0071 15.5 1.4 14 122-135 16-29 (32)
6 1loi_A Cyclic 3',5'-AMP specif 6.7 1.3E+02 0.0044 14.9 0.4 9 8-16 17-25 (26)
7 2i68_A Protein EMRE; transmemb 6.5 7.6E+02 0.026 17.8 7.0 29 174-202 34-62 (137)
8 1rh5_C Secbeta; protein transl 4.7 5.3E+02 0.018 15.5 2.4 21 132-152 27-47 (53)
9 3o7q_A L-fucose-proton symport 4.7 1.4E+03 0.047 18.8 14.3 20 37-56 279-299 (438)
10 3mcb_B Transcription factor BT 4.0 1.2E+02 0.004 19.0 -1.1 8 2-9 21-28 (58)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.68 E-value=1.6e-07 Score=69.66 Aligned_cols=70 Identities=17% Similarity=0.282 Sum_probs=61.7
Q ss_pred HHHHHHHHH-HHHHHHHhhcchhhHHHHh-hhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhcccc
Q 024137 86 LLGFVDVQG-NFLVNKAYQFSSITSVTLL-DCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (272)
Q Consensus 86 ~~g~~~~~~-~~l~~~al~~~~a~~a~~l-~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~ 155 (272)
+.+...... +.++..++++.|.+.+..+ ..+.|+++.+++++++||+++..|++|+.+.+.|+.++...+
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 455555555 7888899999999999988 899999999999999999999999999999999999987644
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.54 E-value=2.8e-07 Score=70.85 Aligned_cols=70 Identities=17% Similarity=0.282 Sum_probs=51.1
Q ss_pred HHHHHHHHH-HHHHHHHhhcchhhHHHHh-hhhhHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhhcccc
Q 024137 86 LLGFVDVQG-NFLVNKAYQFSSITSVTLL-DCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (272)
Q Consensus 86 ~~g~~~~~~-~~l~~~al~~~~a~~a~~l-~~~~Pv~~~lls~~~~~er~s~~~~~gi~l~~~Gv~ll~~~~ 155 (272)
+.+++.... ++++..++++.|++.+..+ .++.|+++.+++++++||+++..+++|+++.++|+.++...+
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 455555555 8889999999999999988 899999999999999999999999999999999999987644
No 3
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=13.20 E-value=1.1e+02 Score=16.76 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=14.1
Q ss_pred hhhHHHHHHHHHHHhcccchhh
Q 024137 115 CCTIAWAIVLTWLFLGTRYSLW 136 (272)
Q Consensus 115 ~~~Pv~~~lls~~~~~er~s~~ 136 (272)
...-+..+++..++.|||+++.
T Consensus 10 giL~iYgii~T~Ly~R~K~~~~ 31 (33)
T 2hac_A 10 GILFIYGVILTALFLRVKFSRS 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHHHHHhhcc
Confidence 3344556677777788887653
No 4
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=8.55 E-value=3.9e+02 Score=22.91 Aligned_cols=10 Identities=10% Similarity=0.056 Sum_probs=4.3
Q ss_pred HHHHHHHHHH
Q 024137 19 TLYLLFLGQL 28 (272)
Q Consensus 19 ~~~~~~~~~~ 28 (272)
..++++...+
T Consensus 323 P~~a~~~~~~ 332 (445)
T 3l1l_A 323 PVAGLIIVGI 332 (445)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 3445444433
No 5
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=7.41 E-value=2.1e+02 Score=15.50 Aligned_cols=14 Identities=7% Similarity=0.202 Sum_probs=9.3
Q ss_pred HHHHHHHhcccchh
Q 024137 122 IVLTWLFLGTRYSL 135 (272)
Q Consensus 122 ~lls~~~~~er~s~ 135 (272)
.++..++++|.|..
T Consensus 16 iiFFAI~FRePPri 29 (32)
T 3arc_T 16 LFFFAIFFREPPRI 29 (32)
T ss_dssp HHHHHHHTSCCCCC
T ss_pred HHHHhhhhcCCCCC
Confidence 34556788888764
No 6
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=6.68 E-value=1.3e+02 Score=14.86 Aligned_cols=9 Identities=22% Similarity=0.907 Sum_probs=6.8
Q ss_pred chhhhhHHH
Q 024137 8 NSWWRSHVT 16 (272)
Q Consensus 8 ~~~~~~~~~ 16 (272)
.+||++||+
T Consensus 17 vgwwdqfkr 25 (26)
T 1loi_A 17 VGWWDQFKR 25 (26)
T ss_dssp GGGHHHHTC
T ss_pred hhhHHHhcc
Confidence 478888874
No 7
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=6.50 E-value=7.6e+02 Score=17.81 Aligned_cols=29 Identities=7% Similarity=-0.134 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHhhhccCCChHHHHHH
Q 024137 174 IAGTIFFATSNVGEEFFVKKKDRVEVVCM 202 (272)
Q Consensus 174 l~a~~~~a~~~v~~k~~~~~~~~~~~~~~ 202 (272)
+++.++++++..+.-+..++.|.......
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~i 62 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAI 62 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHH
Confidence 34445555555555555566555544333
No 8
>1rh5_C Secbeta; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.29.1 PDB: 1rhz_C 2yxq_C 2yxr_C 3kcr_C 3dkn_C 3bo1_C 3bo0_C
Probab=4.72 E-value=5.3e+02 Score=15.51 Aligned_cols=21 Identities=14% Similarity=0.284 Sum_probs=16.7
Q ss_pred cchhhHHHHHHHHHhhhhhhc
Q 024137 132 RYSLWQLLGAALCVLGLGLVL 152 (272)
Q Consensus 132 r~s~~~~~gi~l~~~Gv~ll~ 152 (272)
|+++...+++.++++.+.++.
T Consensus 27 Ki~P~~Vl~~si~~i~~V~~L 47 (53)
T 1rh5_C 27 RVKPEHVIGVTVAFVIIEAIL 47 (53)
T ss_dssp CCCHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeehhhhHHHHHHHHHHH
Confidence 788888888888887776654
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=4.71 E-value=1.4e+03 Score=18.77 Aligned_cols=20 Identities=5% Similarity=0.014 Sum_probs=9.8
Q ss_pred HHHHHH-HhhcCCCChHHHHH
Q 024137 37 SFTSSL-IADLGVDAPVTQSA 56 (272)
Q Consensus 37 ~~~~~~-l~~~~~~~p~~~~~ 56 (272)
.+...+ +.+.-+.++.....
T Consensus 279 ~~~~~~~~~~~~g~~~~~~~~ 299 (438)
T 3o7q_A 279 SYLIRYAVEEIPGMTAGFAAN 299 (438)
T ss_dssp HHHHHHHHHHSTTCCHHHHHH
T ss_pred HHHHHHhhhccCCcchhHHHH
Confidence 444555 44433556655444
No 10
>3mcb_B Transcription factor BTF3; beta-barrel like structure, NAC, heterodimer, chaperone; 1.90A {Homo sapiens}
Probab=4.03 E-value=1.2e+02 Score=18.95 Aligned_cols=8 Identities=25% Similarity=0.492 Sum_probs=4.6
Q ss_pred CCccCcch
Q 024137 2 NWNAPINS 9 (272)
Q Consensus 2 ~~~~~~~~ 9 (272)
|||+|+.+
T Consensus 21 hF~nPkVq 28 (58)
T 3mcb_B 21 HFNNPKVQ 28 (58)
T ss_dssp EEESCEEE
T ss_pred EecCcceE
Confidence 56666653
Done!