Query 024137
Match_columns 272
No_of_seqs 141 out of 1807
Neff 8.7
Searched_HMMs 13730
Date Mon Mar 25 03:02:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024137.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024137hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 11.1 91 0.0066 14.5 2.6 19 168-186 3-21 (27)
2 d2r6gf1 e.70.1.1 (F:13-260) Ma 5.3 5.6E+02 0.041 18.8 7.6 23 120-142 37-59 (248)
3 d1ik0a_ a.26.1.2 (A:) Interleu 2.7 3.7E+02 0.027 17.0 2.0 16 8-23 55-70 (113)
4 d2ffsa1 d.129.3.7 (A:1-151) Hy 2.6 2.4E+02 0.018 19.3 1.1 23 3-25 9-31 (151)
5 d2axtt1 f.23.34.1 (T:1-30) Pho 2.1 4.5E+02 0.033 12.1 3.8 20 201-220 5-24 (30)
6 d1ufia_ a.30.4.1 (A:) Dimerisa 1.7 4.5E+02 0.033 13.5 1.0 11 4-14 23-33 (48)
7 d1v54d_ f.23.1.1 (D:) Mitochon 1.6 1E+03 0.076 15.6 3.2 13 22-34 77-89 (144)
8 d1ak2a2 g.41.2.1 (A:147-176) M 1.4 5.3E+02 0.039 12.2 0.8 9 1-9 9-17 (30)
9 d1xu0a_ d.6.1.1 (A:) Prion pro 1.3 3.5E+02 0.026 16.9 0.0 11 1-11 15-25 (102)
10 d2nwwa1 f.49.1.1 (A:12-416) Pr 1.1 2E+03 0.14 16.2 6.6 86 17-102 3-88 (405)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=11.12 E-value=91 Score=14.51 Aligned_cols=19 Identities=32% Similarity=0.475 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 024137 168 LGDVLVIAGTIFFATSNVG 186 (272)
Q Consensus 168 ~G~~~~l~a~~~~a~~~v~ 186 (272)
.|.+.+-++++.||.|.-+
T Consensus 3 lgli~~tl~glf~aayqqy 21 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQQY 21 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred eeehHHHHHHHHHHHHHHh
Confidence 5777777888888887654
No 2
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=5.27 E-value=5.6e+02 Score=18.77 Aligned_cols=23 Identities=9% Similarity=0.257 Sum_probs=12.0
Q ss_pred HHHHHHHHHhcccchhhHHHHHH
Q 024137 120 WAIVLTWLFLGTRYSLWQLLGAA 142 (272)
Q Consensus 120 ~~~lls~~~~~er~s~~~~~gi~ 142 (272)
.+.+..++++.+|--..+++-=+
T Consensus 37 ~~~~~~~vy~s~r~~p~kyi~PG 59 (248)
T d2r6gf1 37 LSSAGLYIFANRKAYAWRYVYPG 59 (248)
T ss_dssp HHHHHHHHHSSSCCTTHHHHHHH
T ss_pred HHHheEEEEEccCccceehhhhH
Confidence 34444555666665555554433
No 3
>d1ik0a_ a.26.1.2 (A:) Interleukin-13 (IL-13) {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.72 E-value=3.7e+02 Score=17.03 Aligned_cols=16 Identities=19% Similarity=-0.039 Sum_probs=10.1
Q ss_pred chhhhhHHHHHHHHHH
Q 024137 8 NSWWRSHVTLRTLYLL 23 (272)
Q Consensus 8 ~~~~~~~~~~~~~~~~ 23 (272)
++|..++|+.+++.|+
T Consensus 55 S~Cs~Iq~tqRmL~~l 70 (113)
T d1ik0a_ 55 SGCSAIEKTQRMLSGF 70 (113)
T ss_dssp CSCGGGHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHhh
Confidence 4666677777766543
No 4
>d2ffsa1 d.129.3.7 (A:1-151) Hypothetical protein PA1206 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=2.61 E-value=2.4e+02 Score=19.31 Aligned_cols=23 Identities=13% Similarity=-0.263 Sum_probs=12.3
Q ss_pred CccCcchhhhhHHHHHHHHHHHH
Q 024137 3 WNAPINSWWRSHVTLRTLYLLFL 25 (272)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~ 25 (272)
.|.|-+|--...++.+.|.|+++
T Consensus 9 IN~p~~p~~p~LTr~QlW~GL~l 31 (151)
T d2ffsa1 9 VNDRTLVDLPVLDRLQLWEGLVC 31 (151)
T ss_dssp CCCCCC---CCCCHHHHHHHHHH
T ss_pred cCCCCCCCCCccCHHHHHHHHHH
Confidence 46666664334556666777654
No 5
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.11 E-value=4.5e+02 Score=12.13 Aligned_cols=20 Identities=5% Similarity=0.180 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 024137 201 CMIGVYGLLVSAVQLSILEL 220 (272)
Q Consensus 201 ~~~~~~g~i~~~i~~~~~~~ 220 (272)
.+..+++.++.+..+.++.+
T Consensus 5 ~yv~ifac~i~lfffaiffr 24 (30)
T d2axtt1 5 TYVFIFACIIALFFFAIFFR 24 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHTS
T ss_pred ehHHHHHHHHHHHHHHHHhc
Confidence 44455555554433344443
No 6
>d1ufia_ a.30.4.1 (A:) Dimerisation domain of CENP-B {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.72 E-value=4.5e+02 Score=13.50 Aligned_cols=11 Identities=36% Similarity=0.558 Sum_probs=7.7
Q ss_pred ccCcchhhhhH
Q 024137 4 NAPINSWWRSH 14 (272)
Q Consensus 4 ~~~~~~~~~~~ 14 (272)
+-|++++-|+|
T Consensus 23 sfpid~rvqsh 33 (48)
T d1ufia_ 23 SFPIDDRVQSH 33 (48)
T ss_dssp TSCCCHHHHHH
T ss_pred cCCchHHHHHH
Confidence 35778777776
No 7
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=1.60 E-value=1e+03 Score=15.62 Aligned_cols=13 Identities=0% Similarity=-0.021 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q 024137 22 LLFLGQLVSFTLA 34 (272)
Q Consensus 22 ~~~~~~~~a~~~~ 34 (272)
.++.+.+..+.++
T Consensus 77 ~v~g~~~~~i~~s 89 (144)
T d1v54d_ 77 TVVGAAMFFIGFT 89 (144)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444434333
No 8
>d1ak2a2 g.41.2.1 (A:147-176) Microbial and mitochondrial ADK, insert "zinc finger" domain {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Probab=1.38 E-value=5.3e+02 Score=12.22 Aligned_cols=9 Identities=22% Similarity=0.497 Sum_probs=0.0
Q ss_pred CCCccCcch
Q 024137 1 MNWNAPINS 9 (272)
Q Consensus 1 ~~~~~~~~~ 9 (272)
..||-|+++
T Consensus 9 v~f~PPk~~ 17 (30)
T d1ak2a2 9 EEFNPPKEP 17 (30)
T ss_dssp TTTBCCSST
T ss_pred ccccCCCCC
No 9
>d1xu0a_ d.6.1.1 (A:) Prion protein domain {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=1.32 E-value=3.5e+02 Score=16.91 Aligned_cols=11 Identities=27% Similarity=0.706 Sum_probs=0.0
Q ss_pred CCCccCcchhh
Q 024137 1 MNWNAPINSWW 11 (272)
Q Consensus 1 ~~~~~~~~~~~ 11 (272)
|||++|-+.+|
T Consensus 15 ~hF~n~~E~Ry 25 (102)
T d1xu0a_ 15 YQFNNPMESRY 25 (102)
T ss_dssp CCCSSHHHHHH
T ss_pred cccCChHHHHH
No 10
>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]}
Probab=1.15 E-value=2e+03 Score=16.16 Aligned_cols=86 Identities=9% Similarity=0.021 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHH
Q 024137 17 LRTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQRLRVAWYWYLLLGFVDVQGNF 96 (272)
Q Consensus 17 ~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 96 (272)
+|.+.|++.|.+..+.+...+.......-.+..+-.++...|+.+.=+++.-+..--.+..+++.++.....+.......
T Consensus 3 ~rili~lv~Gi~~G~~~~~~~~~~~~~~~l~~~g~lFi~lL~m~v~PLIf~sii~gi~~L~~~~~gkl~~~ti~~~l~tt 82 (405)
T d2nwwa1 3 QKILIGLILGAIVGLILGHYGYAHAVHTYVKPFGDLFVRLLKMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTS 82 (405)
T ss_dssp SHHHHHHHHHHHHHHHHHTTTTHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHTTTCSCTTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcchHHHHHHHHHHHHH
Q ss_pred HHHHHh
Q 024137 97 LVNKAY 102 (272)
Q Consensus 97 l~~~al 102 (272)
..-..+
T Consensus 83 ~iA~~i 88 (405)
T d2nwwa1 83 AFAVTL 88 (405)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Done!