Query 024139
Match_columns 272
No_of_seqs 172 out of 987
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 02:22:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024139.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024139hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1319 bHLHZip transcription 99.7 6.2E-18 1.4E-22 149.7 1.5 131 115-269 27-164 (229)
2 cd00083 HLH Helix-loop-helix d 99.4 3.5E-13 7.6E-18 96.0 5.9 52 174-225 6-60 (60)
3 smart00353 HLH helix loop heli 99.4 6E-13 1.3E-17 93.3 6.3 49 177-225 1-52 (53)
4 PF00010 HLH: Helix-loop-helix 99.4 9.3E-13 2E-17 93.7 5.4 47 175-221 4-55 (55)
5 KOG1318 Helix loop helix trans 99.1 6.7E-11 1.5E-15 115.3 5.6 54 172-225 233-290 (411)
6 KOG4304 Transcriptional repres 98.7 1.1E-08 2.4E-13 94.4 3.7 53 175-227 35-95 (250)
7 KOG3561 Aryl-hydrocarbon recep 98.4 4.2E-07 9.1E-12 95.2 5.8 51 173-223 21-75 (803)
8 KOG2483 Upstream transcription 98.2 4E-06 8.7E-11 76.9 8.0 62 172-233 59-123 (232)
9 KOG0561 bHLH transcription fac 98.0 2.2E-06 4.9E-11 81.3 2.7 55 173-227 61-117 (373)
10 KOG2588 Predicted DNA-binding 98.0 2.4E-06 5.3E-11 90.3 2.6 64 172-235 276-340 (953)
11 PLN03217 transcription factor 97.7 0.00011 2.3E-09 58.6 6.1 50 184-233 19-74 (93)
12 KOG3960 Myogenic helix-loop-he 97.6 0.00013 2.9E-09 67.9 6.1 75 158-232 103-180 (284)
13 KOG4029 Transcription factor H 97.3 0.00021 4.5E-09 64.5 4.2 57 175-231 112-172 (228)
14 KOG3910 Helix loop helix trans 95.9 0.0041 9E-08 62.8 2.2 52 176-227 530-585 (632)
15 KOG4447 Transcription factor T 94.3 0.075 1.6E-06 46.7 4.8 85 176-268 82-170 (173)
16 KOG3558 Hypoxia-inducible fact 92.2 0.081 1.8E-06 55.5 2.0 46 174-219 48-97 (768)
17 KOG3560 Aryl-hydrocarbon recep 86.9 0.6 1.3E-05 48.3 3.4 39 180-218 33-75 (712)
18 KOG3559 Transcriptional regula 86.4 0.79 1.7E-05 46.1 3.9 43 177-219 6-52 (598)
19 KOG3582 Mlx interactors and re 82.1 0.19 4.1E-06 53.0 -2.6 69 175-243 654-727 (856)
20 KOG3898 Transcription factor N 78.0 1.3 2.9E-05 41.2 1.9 48 176-223 76-126 (254)
21 KOG4395 Transcription factor A 75.6 4.4 9.5E-05 38.5 4.5 51 176-226 178-231 (285)
22 KOG4447 Transcription factor T 47.9 13 0.00029 33.0 2.1 43 179-221 29-73 (173)
23 COG3074 Uncharacterized protei 37.4 33 0.00072 26.8 2.6 27 210-236 13-39 (79)
24 PF08781 DP: Transcription fac 35.7 46 0.00099 28.9 3.5 58 179-249 8-66 (142)
25 PF09849 DUF2076: Uncharacteri 32.5 1.8E+02 0.0038 27.4 7.0 15 217-231 57-71 (247)
26 PF06005 DUF904: Protein of un 32.2 71 0.0015 24.5 3.7 23 210-232 13-35 (72)
27 KOG3582 Mlx interactors and re 28.5 21 0.00045 38.4 0.2 58 175-235 790-852 (856)
28 PRK15422 septal ring assembly 28.4 83 0.0018 24.9 3.5 27 209-235 12-38 (79)
29 PRK13702 replication protein; 26.6 1.8E+02 0.0039 23.3 5.2 42 174-215 22-76 (85)
30 smart00338 BRLZ basic region l 26.4 77 0.0017 22.9 2.9 21 214-234 25-45 (65)
31 KOG4571 Activating transcripti 25.7 1.1E+02 0.0023 29.7 4.4 17 178-194 224-240 (294)
32 KOG3584 cAMP response element 25.5 41 0.00089 32.8 1.6 20 215-234 312-331 (348)
33 PF02344 Myc-LZ: Myc leucine z 25.4 77 0.0017 21.1 2.4 16 181-196 14-29 (32)
34 PF00170 bZIP_1: bZIP transcri 25.1 87 0.0019 22.6 3.0 18 179-196 16-33 (64)
35 PF14992 TMCO5: TMCO5 family 23.6 1.1E+02 0.0024 29.4 4.1 25 209-233 145-169 (280)
36 KOG3896 Dynactin, subunit p62 22.9 1.2E+02 0.0026 30.4 4.3 28 208-235 139-166 (449)
37 TIGR00986 3a0801s05tom22 mitoc 22.4 51 0.0011 28.8 1.5 35 184-218 48-82 (145)
38 KOG4005 Transcription factor X 22.0 1.8E+02 0.0039 27.8 5.0 52 177-234 65-116 (292)
39 PHA03011 hypothetical protein; 21.9 1.2E+02 0.0026 25.4 3.5 30 205-234 89-118 (120)
40 PF11800 RP-C_C: Replication p 21.8 3.9E+02 0.0085 23.7 7.1 43 185-230 4-46 (207)
41 PRK06835 DNA replication prote 21.0 72 0.0016 30.7 2.4 38 214-251 64-101 (329)
42 PF04380 BMFP: Membrane fusoge 20.7 1E+02 0.0022 23.7 2.8 52 176-229 26-78 (79)
43 PF06305 DUF1049: Protein of u 20.4 1.1E+02 0.0024 21.9 2.7 19 216-234 49-67 (68)
No 1
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=99.68 E-value=6.2e-18 Score=149.66 Aligned_cols=131 Identities=21% Similarity=0.261 Sum_probs=103.7
Q ss_pred cccCCCCCCCCCCCCCCccchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCCCCccCCCCcccHHHHHHHHHHHHHHHHH
Q 024139 115 YWRGGAGDSNSSTGVPLSQKQNSMAAMRETIFRVAAMQPIHIDPDSVKPPKRRNVKISKDPQSVAARHRRERISERIRIL 194 (272)
Q Consensus 115 ~~~~~gs~s~~~~s~~s~e~k~s~aalKk~l~~vp~m~~~~~d~~S~k~~krr~~~~s~~~Hs~~ER~RRerIne~i~~L 194 (272)
++-+.|+.+++++.++++++.....+-+|..++ .+|| ..|..+||+||+.|+..+..|
T Consensus 27 r~Ss~GStsssSApNtdd~ds~~hS~a~k~syk----------------~rrr------~aHtqaEqkRRdAIk~GYddL 84 (229)
T KOG1319|consen 27 RASSIGSTSASSAPNTDDEDSDYHSEAYKESYK----------------DRRR------RAHTQAEQKRRDAIKRGYDDL 84 (229)
T ss_pred hcCCCCCCCCCCCCCCCcccccchhHHHHhhHH----------------HHHH------HHHHHHHHHHHHHHHhchHHH
Confidence 345567777777777777766554444443332 2222 459999999999999999999
Q ss_pred hccCCC-------CCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCcccccCCCCCCccccccCCCCCCCCCCC
Q 024139 195 QRLVPG-------GTKMDTASMLDEAIHYVKFLKTQVQSLERAAANRPAGIGFPATLTTGNYPPIIGKEYQQPAVRNGAL 267 (272)
Q Consensus 195 rsLVP~-------~~K~DKasIL~eAIdYIk~Lq~qV~~LE~~~~~~~~~~~~~~~~~~~~y~~~~~~~~q~~~~~~~~~ 267 (272)
+.|||. |.|+.||.||.++||||.+|+.++.+.|++...+.++|...-++ +.+||+ |++++|..|..|+.|
T Consensus 85 q~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L~k~vtAL~iI-k~~YEq-M~~~~qdnp~~~e~~ 162 (229)
T KOG1319|consen 85 QTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTLRKDVTALKII-KVNYEQ-MVKAHQDNPHEGEDQ 162 (229)
T ss_pred HHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HHHhcccCCCcchhh
Confidence 999994 35788999999999999999999999999999999996554444 459999 999999999998887
Q ss_pred CC
Q 024139 268 HY 269 (272)
Q Consensus 268 ~~ 269 (272)
.-
T Consensus 163 ~~ 164 (229)
T KOG1319|consen 163 VS 164 (229)
T ss_pred hh
Confidence 53
No 2
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.41 E-value=3.5e-13 Score=96.01 Aligned_cols=52 Identities=33% Similarity=0.576 Sum_probs=48.9
Q ss_pred CcccHHHHHHHHHHHHHHHHHhccCCCC---CCCChhhHHHHHHHHHHHHHHHHH
Q 024139 174 DPQSVAARHRRERISERIRILQRLVPGG---TKMDTASMLDEAIHYVKFLKTQVQ 225 (272)
Q Consensus 174 ~~Hs~~ER~RRerIne~i~~LrsLVP~~---~K~DKasIL~eAIdYIk~Lq~qV~ 225 (272)
..|+..||+||++||+.|..|+.+||.. .|+||++||+.||+||++|+.+++
T Consensus 6 ~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~~ 60 (60)
T cd00083 6 EAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELLQ 60 (60)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 4599999999999999999999999988 899999999999999999998863
No 3
>smart00353 HLH helix loop helix domain.
Probab=99.40 E-value=6e-13 Score=93.27 Aligned_cols=49 Identities=35% Similarity=0.586 Sum_probs=45.7
Q ss_pred cHHHHHHHHHHHHHHHHHhccCC---CCCCCChhhHHHHHHHHHHHHHHHHH
Q 024139 177 SVAARHRRERISERIRILQRLVP---GGTKMDTASMLDEAIHYVKFLKTQVQ 225 (272)
Q Consensus 177 s~~ER~RRerIne~i~~LrsLVP---~~~K~DKasIL~eAIdYIk~Lq~qV~ 225 (272)
+..||+||++||++|..|+.+|| .+.|+||++||+.||+||++|+.+++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 46799999999999999999999 46799999999999999999999986
No 4
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.36 E-value=9.3e-13 Score=93.70 Aligned_cols=47 Identities=36% Similarity=0.608 Sum_probs=44.8
Q ss_pred cccHHHHHHHHHHHHHHHHHhccCCCC-----CCCChhhHHHHHHHHHHHHH
Q 024139 175 PQSVAARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFLK 221 (272)
Q Consensus 175 ~Hs~~ER~RRerIne~i~~LrsLVP~~-----~K~DKasIL~eAIdYIk~Lq 221 (272)
.|+..||+||++||+.|..|+.+||.+ .|+||++||+.||+||++||
T Consensus 4 ~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 4 KHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 599999999999999999999999976 78999999999999999997
No 5
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=99.11 E-value=6.7e-11 Score=115.32 Aligned_cols=54 Identities=30% Similarity=0.559 Sum_probs=48.2
Q ss_pred CCCcccHHHHHHHHHHHHHHHHHhccCCCC----CCCChhhHHHHHHHHHHHHHHHHH
Q 024139 172 SKDPQSVAARHRRERISERIRILQRLVPGG----TKMDTASMLDEAIHYVKFLKTQVQ 225 (272)
Q Consensus 172 s~~~Hs~~ER~RRerIne~i~~LrsLVP~~----~K~DKasIL~eAIdYIk~Lq~qV~ 225 (272)
+++.|+.+|||||++||++|++|..|||.| .|..|..||..++|||+.||+..+
T Consensus 233 Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q 290 (411)
T KOG1318|consen 233 KRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQ 290 (411)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHH
Confidence 447899999999999999999999999988 455699999999999999987444
No 6
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=98.69 E-value=1.1e-08 Score=94.43 Aligned_cols=53 Identities=23% Similarity=0.456 Sum_probs=46.8
Q ss_pred cccHHHHHHHHHHHHHHHHHhccCCCC--------CCCChhhHHHHHHHHHHHHHHHHHHH
Q 024139 175 PQSVAARHRRERISERIRILQRLVPGG--------TKMDTASMLDEAIHYVKFLKTQVQSL 227 (272)
Q Consensus 175 ~Hs~~ER~RRerIne~i~~LrsLVP~~--------~K~DKasIL~eAIdYIk~Lq~qV~~L 227 (272)
.+-+.|||||+|||+.|.+|+.||+.+ .|++||.||+-||+|++.|+.....-
T Consensus 35 ~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~~~ 95 (250)
T KOG4304|consen 35 RKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQAA 95 (250)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcccccc
Confidence 478999999999999999999999932 67889999999999999999865443
No 7
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=98.37 E-value=4.2e-07 Score=95.20 Aligned_cols=51 Identities=25% Similarity=0.474 Sum_probs=47.6
Q ss_pred CCcccHHHHHHHHHHHHHHHHHhccCCCC----CCCChhhHHHHHHHHHHHHHHH
Q 024139 173 KDPQSVAARHRRERISERIRILQRLVPGG----TKMDTASMLDEAIHYVKFLKTQ 223 (272)
Q Consensus 173 ~~~Hs~~ER~RRerIne~i~~LrsLVP~~----~K~DKasIL~eAIdYIk~Lq~q 223 (272)
++.|+.+|||||+++|.-|.+|.+|||.+ .|+||.+||.+||++||.+++.
T Consensus 21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 21 RENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 36799999999999999999999999976 6999999999999999998875
No 8
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=98.22 E-value=4e-06 Score=76.92 Aligned_cols=62 Identities=19% Similarity=0.300 Sum_probs=50.7
Q ss_pred CCCcccHHHHHHHHHHHHHHHHHhccCCCC--CCCC-hhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024139 172 SKDPQSVAARHRRERISERIRILQRLVPGG--TKMD-TASMLDEAIHYVKFLKTQVQSLERAAAN 233 (272)
Q Consensus 172 s~~~Hs~~ER~RRerIne~i~~LrsLVP~~--~K~D-KasIL~eAIdYIk~Lq~qV~~LE~~~~~ 233 (272)
++..|+..||+||+.|+++|..|+.+||.+ .+.. .++||++|++||+.|+.+..+.+...+.
T Consensus 59 ~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~~~e~ 123 (232)
T KOG2483|consen 59 SRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQDIED 123 (232)
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHHHHHH
Confidence 446699999999999999999999999966 3333 6999999999999999876655554433
No 9
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=98.05 E-value=2.2e-06 Score=81.34 Aligned_cols=55 Identities=24% Similarity=0.466 Sum_probs=47.8
Q ss_pred CCcccHHHHHHHHHHHHHHHHHhccCC--CCCCCChhhHHHHHHHHHHHHHHHHHHH
Q 024139 173 KDPQSVAARHRRERISERIRILQRLVP--GGTKMDTASMLDEAIHYVKFLKTQVQSL 227 (272)
Q Consensus 173 ~~~Hs~~ER~RRerIne~i~~LrsLVP--~~~K~DKasIL~eAIdYIk~Lq~qV~~L 227 (272)
++.-+..||||=.-||-.|..||+|+| .|.|++||.||+.+.+||.+|+.+.-+|
T Consensus 61 ReIANsNERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~Kt~l 117 (373)
T KOG0561|consen 61 REIANSNERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHKTEL 117 (373)
T ss_pred HHhhcchHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhccccc
Confidence 345677899999999999999999999 4699999999999999999998754433
No 10
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=98.02 E-value=2.4e-06 Score=90.32 Aligned_cols=64 Identities=27% Similarity=0.453 Sum_probs=59.1
Q ss_pred CCCcccHHHHHHHHHHHHHHHHHhccCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 024139 172 SKDPQSVAARHRRERISERIRILQRLVPGG-TKMDTASMLDEAIHYVKFLKTQVQSLERAAANRP 235 (272)
Q Consensus 172 s~~~Hs~~ER~RRerIne~i~~LrsLVP~~-~K~DKasIL~eAIdYIk~Lq~qV~~LE~~~~~~~ 235 (272)
++..|+++|||-|-.||++|.+|+.+||+. .|+.|..+|..||+||++|+...+.+..+++...
T Consensus 276 kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~~~l~ 340 (953)
T KOG2588|consen 276 KRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLENASLR 340 (953)
T ss_pred ccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccchhhhhhh
Confidence 367899999999999999999999999987 8999999999999999999999999988877655
No 11
>PLN03217 transcription factor ATBS1; Provisional
Probab=97.69 E-value=0.00011 Score=58.55 Aligned_cols=50 Identities=26% Similarity=0.500 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhccCCC------CCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024139 184 RERISERIRILQRLVPG------GTKMDTASMLDEAIHYVKFLKTQVQSLERAAAN 233 (272)
Q Consensus 184 RerIne~i~~LrsLVP~------~~K~DKasIL~eAIdYIk~Lq~qV~~LE~~~~~ 233 (272)
-+.|++-+..|+.|+|. ..|..-+-||+||+.||+.|+.+|..|.+....
T Consensus 19 ddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerLs~ 74 (93)
T PLN03217 19 EDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSE 74 (93)
T ss_pred HHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999993 356677889999999999999999999887654
No 12
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=97.58 E-value=0.00013 Score=67.91 Aligned_cols=75 Identities=20% Similarity=0.370 Sum_probs=57.0
Q ss_pred CCCCCCCCCCCccCCC-CcccHHHHHHHHHHHHHHHHHhc-cCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 024139 158 PDSVKPPKRRNVKISK-DPQSVAARHRRERISERIRILQR-LVPGG-TKMDTASMLDEAIHYVKFLKTQVQSLERAAA 232 (272)
Q Consensus 158 ~~S~k~~krr~~~~s~-~~Hs~~ER~RRerIne~i~~Lrs-LVP~~-~K~DKasIL~eAIdYIk~Lq~qV~~LE~~~~ 232 (272)
.++.+..||+....-+ ..-.+.||||=.|+||.|.+|++ -+++- ..+-|+.||..||+||..||.-++++..+..
T Consensus 103 ~wackackrks~svDRRKAATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~~ 180 (284)
T KOG3960|consen 103 LWACKACKRKSTSVDRRKAATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQAEK 180 (284)
T ss_pred HHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhccch
Confidence 4556666655543322 22467899999999999999987 44544 6788999999999999999998888876543
No 13
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=97.34 E-value=0.00021 Score=64.51 Aligned_cols=57 Identities=19% Similarity=0.381 Sum_probs=50.2
Q ss_pred cccHHHHHHHHHHHHHHHHHhccCCC----CCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 024139 175 PQSVAARHRRERISERIRILQRLVPG----GTKMDTASMLDEAIHYVKFLKTQVQSLERAA 231 (272)
Q Consensus 175 ~Hs~~ER~RRerIne~i~~LrsLVP~----~~K~DKasIL~eAIdYIk~Lq~qV~~LE~~~ 231 (272)
.++..||.|=+.+|..|..||.+||. ..|+.|..+|..||.||++|+.-++.-+...
T Consensus 112 ~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~~~ 172 (228)
T KOG4029|consen 112 ARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEAPL 172 (228)
T ss_pred hhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccccCC
Confidence 35777999999999999999999993 5789999999999999999999888776543
No 14
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=95.91 E-value=0.0041 Score=62.84 Aligned_cols=52 Identities=21% Similarity=0.256 Sum_probs=43.6
Q ss_pred ccHHHHHHHHHHHHHHHHHhccCCCC----CCCChhhHHHHHHHHHHHHHHHHHHH
Q 024139 176 QSVAARHRRERISERIRILQRLVPGG----TKMDTASMLDEAIHYVKFLKTQVQSL 227 (272)
Q Consensus 176 Hs~~ER~RRerIne~i~~LrsLVP~~----~K~DKasIL~eAIdYIk~Lq~qV~~L 227 (272)
.++.||.|-..||+.|++|.++.--- ....|.-||..||.-|-.|++||++-
T Consensus 530 NNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRER 585 (632)
T KOG3910|consen 530 NNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRER 585 (632)
T ss_pred hhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHc
Confidence 46778888788999999999987632 33459999999999999999999874
No 15
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=94.29 E-value=0.075 Score=46.71 Aligned_cols=85 Identities=16% Similarity=0.298 Sum_probs=59.2
Q ss_pred ccHHHHHHHHHHHHHHHHHhccCCCC--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCcCcccccCCCCCCc
Q 024139 176 QSVAARHRRERISERIRILQRLVPGG--TKMDTASMLDEAIHYVKFLKTQVQSLERAAANRP--AGIGFPATLTTGNYPP 251 (272)
Q Consensus 176 Hs~~ER~RRerIne~i~~LrsLVP~~--~K~DKasIL~eAIdYIk~Lq~qV~~LE~~~~~~~--~~~~~~~~~~~~~y~~ 251 (272)
|++-||+|-..+|+.|..||.++|.. .|++|.--|.-|-.||.+|=+-. ..+.+-.+ .--.+|.. -.|.
T Consensus 82 anvrerqRtqsLn~AF~~lr~iiptlPsdklSkiqtLklA~ryidfl~~vl---~s~l~~~~~~~sc~yPk~----~~e~ 154 (173)
T KOG4447|consen 82 ANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVL---QSDLELDPKMQSCSYPKV----AHER 154 (173)
T ss_pred HHHHHHHhhhhHHHHHHHHHhhcCCCCccccccccchhhcccCCchhhhcc---ccccccccccCCCCCCcc----chhh
Confidence 69999999999999999999999954 89999999999999999996543 33322112 22344433 2333
Q ss_pred cccccCCCCCCCCCCCC
Q 024139 252 IIGKEYQQPAVRNGALH 268 (272)
Q Consensus 252 ~~~~~~q~~~~~~~~~~ 268 (272)
+--++-..++.|.+||
T Consensus 155 -Lsy~fsvwrmeg~~q~ 170 (173)
T KOG4447|consen 155 -LSYAFSVWRMEGAWQM 170 (173)
T ss_pred -hccccccccCCCchhc
Confidence 3334445566666665
No 16
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=92.16 E-value=0.081 Score=55.55 Aligned_cols=46 Identities=30% Similarity=0.512 Sum_probs=39.8
Q ss_pred CcccHHHHHHHHHHHHHHHHHhccCCC----CCCCChhhHHHHHHHHHHH
Q 024139 174 DPQSVAARHRRERISERIRILQRLVPG----GTKMDTASMLDEAIHYVKF 219 (272)
Q Consensus 174 ~~Hs~~ER~RRerIne~i~~LrsLVP~----~~K~DKasIL~eAIdYIk~ 219 (272)
++..-+.|.||.|-|+-|.+|..+||- ...+|||+|+.-||-|+|-
T Consensus 48 EkSRdAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLRl 97 (768)
T KOG3558|consen 48 EKSRDAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLRL 97 (768)
T ss_pred hhhhhhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHHH
Confidence 445667999999999999999999992 2679999999999999973
No 17
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=86.85 E-value=0.6 Score=48.29 Aligned_cols=39 Identities=26% Similarity=0.521 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHhccCCC----CCCCChhhHHHHHHHHHH
Q 024139 180 ARHRRERISERIRILQRLVPG----GTKMDTASMLDEAIHYVK 218 (272)
Q Consensus 180 ER~RRerIne~i~~LrsLVP~----~~K~DKasIL~eAIdYIk 218 (272)
-||-|||+|..++.|.+|+|- ..|+||.+||.-+|-|++
T Consensus 33 SKRHRdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr 75 (712)
T KOG3560|consen 33 SKRHRDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLR 75 (712)
T ss_pred chhHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHH
Confidence 456689999999999999994 389999999999999986
No 18
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=86.42 E-value=0.79 Score=46.14 Aligned_cols=43 Identities=33% Similarity=0.488 Sum_probs=37.7
Q ss_pred cHHHHHHHHHHHHHHHHHhccCCCC----CCCChhhHHHHHHHHHHH
Q 024139 177 SVAARHRRERISERIRILQRLVPGG----TKMDTASMLDEAIHYVKF 219 (272)
Q Consensus 177 s~~ER~RRerIne~i~~LrsLVP~~----~K~DKasIL~eAIdYIk~ 219 (272)
.-+.|.||++-|-.|.+|..++|-. ..+||++|+.-|.-|||.
T Consensus 6 KnaA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKm 52 (598)
T KOG3559|consen 6 KNAARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKM 52 (598)
T ss_pred hhHHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHH
Confidence 3468999999999999999999932 559999999999999985
No 19
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=82.11 E-value=0.19 Score=53.03 Aligned_cols=69 Identities=17% Similarity=0.264 Sum_probs=57.4
Q ss_pred cccHHHHHHHHHHHHHHHHHhccCCCC-----CCCChhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCcccc
Q 024139 175 PQSVAARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFLKTQVQSLERAAANRPAGIGFPAT 243 (272)
Q Consensus 175 ~Hs~~ER~RRerIne~i~~LrsLVP~~-----~K~DKasIL~eAIdYIk~Lq~qV~~LE~~~~~~~~~~~~~~~ 243 (272)
.|+.+|.+||..|+-++..|-+++-+. .|+.++.-+..+++||..++.+...+.++.-..++++..+..
T Consensus 654 t~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~v~~e~~~lr~~~s~~~A 727 (856)
T KOG3582|consen 654 THISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQERVPVQEEAHSLRKEISELNA 727 (856)
T ss_pred cCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhccccchhhhhhhhhhHHHHH
Confidence 589999999999999999999999864 556677789999999999998888887777777766555443
No 20
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=78.00 E-value=1.3 Score=41.16 Aligned_cols=48 Identities=19% Similarity=0.352 Sum_probs=41.9
Q ss_pred ccHHHHHHHHHHHHHHHHHhccCCC---CCCCChhhHHHHHHHHHHHHHHH
Q 024139 176 QSVAARHRRERISERIRILQRLVPG---GTKMDTASMLDEAIHYVKFLKTQ 223 (272)
Q Consensus 176 Hs~~ER~RRerIne~i~~LrsLVP~---~~K~DKasIL~eAIdYIk~Lq~q 223 (272)
-+.-||.|--.+|+.++.||++||. ..|+.|...|.-|-.||..|++-
T Consensus 76 aNaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~~ 126 (254)
T KOG3898|consen 76 ANARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSEV 126 (254)
T ss_pred ccchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhccc
Confidence 4667998889999999999999994 38899999999999999988753
No 21
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=75.63 E-value=4.4 Score=38.46 Aligned_cols=51 Identities=22% Similarity=0.307 Sum_probs=44.1
Q ss_pred ccHHHHHHHHHHHHHHHHHhccCCCC---CCCChhhHHHHHHHHHHHHHHHHHH
Q 024139 176 QSVAARHRRERISERIRILQRLVPGG---TKMDTASMLDEAIHYVKFLKTQVQS 226 (272)
Q Consensus 176 Hs~~ER~RRerIne~i~~LrsLVP~~---~K~DKasIL~eAIdYIk~Lq~qV~~ 226 (272)
-+..||+|=..+|..|+.||.+||.+ .|+.|-.-|..|-.||--|-.....
T Consensus 178 anarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l~~ 231 (285)
T KOG4395|consen 178 ANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLLDL 231 (285)
T ss_pred cchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhhcC
Confidence 46789999999999999999999965 7788999999999999988766543
No 22
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=47.86 E-value=13 Score=32.96 Aligned_cols=43 Identities=23% Similarity=0.363 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHhccCCCC--CCCChhhHHHHHHHHHHHHH
Q 024139 179 AARHRRERISERIRILQRLVPGG--TKMDTASMLDEAIHYVKFLK 221 (272)
Q Consensus 179 ~ER~RRerIne~i~~LrsLVP~~--~K~DKasIL~eAIdYIk~Lq 221 (272)
.|+.|..++++.+.-|+.|+|+. .++.+---|.-+-+||.+|.
T Consensus 29 ~e~~R~~~ls~~s~l~g~l~pgspa~gk~~~ktlr~~~~~~~~~d 73 (173)
T KOG4447|consen 29 KERGRKRRLSDASTLLGKLEPGSPADGKRGKKTLRIGTDSIQSLD 73 (173)
T ss_pred HHHhHHhhhhhhhhhccccCCCCCCcccccccccccCCCchhhHH
Confidence 48888899999999999999975 33322222444444444443
No 23
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.40 E-value=33 Score=26.82 Aligned_cols=27 Identities=15% Similarity=0.367 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 024139 210 LDEAIHYVKFLKTQVQSLERAAANRPA 236 (272)
Q Consensus 210 L~eAIdYIk~Lq~qV~~LE~~~~~~~~ 236 (272)
+..|||-|.-||..|++|++.+.....
T Consensus 13 iqqAvdTI~LLQmEieELKEknn~l~~ 39 (79)
T COG3074 13 VQQAIDTITLLQMEIEELKEKNNSLSQ 39 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhHH
Confidence 577899999999999999888775443
No 24
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=35.68 E-value=46 Score=28.89 Aligned_cols=58 Identities=28% Similarity=0.365 Sum_probs=38.9
Q ss_pred HHH-HHHHHHHHHHHHHhccCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCcccccCCCCC
Q 024139 179 AAR-HRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERAAANRPAGIGFPATLTTGNY 249 (272)
Q Consensus 179 ~ER-~RRerIne~i~~LrsLVP~~~K~DKasIL~eAIdYIk~Lq~qV~~LE~~~~~~~~~~~~~~~~~~~~y 249 (272)
.|| +||++|..+-..|+.|+ .=..=+|.|-++.+.++........+|-+|.++-+++.
T Consensus 8 ~ek~~~~~rI~~K~~~LqEL~-------------~Q~va~knLv~RN~~~~~~~~~p~~~i~LPFIlV~T~~ 66 (142)
T PF08781_consen 8 EEKQRRRERIKKKKEQLQELI-------------LQQVAFKNLVQRNRQLEQSGNAPSSGIQLPFILVNTSK 66 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHSSSS--GEEESS-EEEEEES
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHhhhccCCCCCeeecCEEEEEecC
Confidence 355 45799999999999876 22233578899999999883333345888888555443
No 25
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=32.54 E-value=1.8e+02 Score=27.38 Aligned_cols=15 Identities=27% Similarity=0.366 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHH
Q 024139 217 VKFLKTQVQSLERAA 231 (272)
Q Consensus 217 Ik~Lq~qV~~LE~~~ 231 (272)
||.|++||++||.+.
T Consensus 57 L~~a~~ri~eLe~ql 71 (247)
T PF09849_consen 57 LKQAQARIQELEAQL 71 (247)
T ss_pred HHHHHHHHHHHHHHH
Confidence 678899999999985
No 26
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=32.20 E-value=71 Score=24.49 Aligned_cols=23 Identities=13% Similarity=0.364 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 024139 210 LDEAIHYVKFLKTQVQSLERAAA 232 (272)
Q Consensus 210 L~eAIdYIk~Lq~qV~~LE~~~~ 232 (272)
+..||+-|.-||.+|.+|++.+.
T Consensus 13 i~~aveti~~Lq~e~eeLke~n~ 35 (72)
T PF06005_consen 13 IQQAVETIALLQMENEELKEKNN 35 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999998654
No 27
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=28.46 E-value=21 Score=38.42 Aligned_cols=58 Identities=16% Similarity=0.149 Sum_probs=47.6
Q ss_pred cccHHHHHHHHHHHHHHHHHhccCCCC-----CCCChhhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 024139 175 PQSVAARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFLKTQVQSLERAAANRP 235 (272)
Q Consensus 175 ~Hs~~ER~RRerIne~i~~LrsLVP~~-----~K~DKasIL~eAIdYIk~Lq~qV~~LE~~~~~~~ 235 (272)
.|.-++|+||-.+.+++..|-+|.|.. .+..+++||. |.|+.+|+.-+.+.+.-..++
T Consensus 790 ~sih~lrr~~~~~~dq~~sL~alrp~v~~~~~ql~S~tS~L~---dp~~~~eq~ska~~e~~~~kr 852 (856)
T KOG3582|consen 790 GSIHALRRTRLNWLDQFCSLPALRPQVLLNLRQLLSSTSILT---DPIKQPEQASKAVTEKIEGKR 852 (856)
T ss_pred chHHHHHHHHHHHhhccccHHHHHHHHHhhHHHhhhhhhccc---CcccchHHHHHHHHhhhhhhc
Confidence 467899999999999999999999943 5678999999 899999988888776544443
No 28
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=28.44 E-value=83 Score=24.91 Aligned_cols=27 Identities=15% Similarity=0.352 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 024139 209 MLDEAIHYVKFLKTQVQSLERAAANRP 235 (272)
Q Consensus 209 IL~eAIdYIk~Lq~qV~~LE~~~~~~~ 235 (272)
-+..|||-|.-||.+|.+|++.+....
T Consensus 12 KIqqAvdtI~LLqmEieELKekn~~L~ 38 (79)
T PRK15422 12 KVQQAIDTITLLQMEIEELKEKNNSLS 38 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999999999998766543
No 29
>PRK13702 replication protein; Provisional
Probab=26.61 E-value=1.8e+02 Score=23.33 Aligned_cols=42 Identities=19% Similarity=0.355 Sum_probs=30.5
Q ss_pred CcccHHHHHHH--HHHHHHHHHHhccCCCC-----------CCCChhhHHHHHHH
Q 024139 174 DPQSVAARHRR--ERISERIRILQRLVPGG-----------TKMDTASMLDEAIH 215 (272)
Q Consensus 174 ~~Hs~~ER~RR--erIne~i~~LrsLVP~~-----------~K~DKasIL~eAId 215 (272)
.+.+.+||.|. .|..+.-++|.-+|++. ..+..|.+|+..|+
T Consensus 22 ~Pls~aErQr~svaRKr~THkei~vfi~n~lK~~L~elc~~~glTQAe~IE~LIe 76 (85)
T PRK13702 22 NPLSAAEKQRASVARKRATHKEIKVFIQNPLKDKLMELCEEEGLTQAEMIERLIE 76 (85)
T ss_pred CCCCHHHHHHHHHHHHHHhhhhhheeecHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 67899999984 56666777888888854 33456777776664
No 30
>smart00338 BRLZ basic region leucin zipper.
Probab=26.40 E-value=77 Score=22.94 Aligned_cols=21 Identities=19% Similarity=0.183 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcC
Q 024139 214 IHYVKFLKTQVQSLERAAANR 234 (272)
Q Consensus 214 IdYIk~Lq~qV~~LE~~~~~~ 234 (272)
-.||..|+.+|+.|+.++...
T Consensus 25 k~~~~~Le~~~~~L~~en~~L 45 (65)
T smart00338 25 KAEIEELERKVEQLEAENERL 45 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 346666666666666665543
No 31
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=25.69 E-value=1.1e+02 Score=29.71 Aligned_cols=17 Identities=18% Similarity=0.243 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024139 178 VAARHRRERISERIRIL 194 (272)
Q Consensus 178 ~~ER~RRerIne~i~~L 194 (272)
-.++.||.+++.++.+.
T Consensus 224 ~~~~~~rkr~qnk~AAt 240 (294)
T KOG4571|consen 224 PEKKLRRKRQQNKAAAT 240 (294)
T ss_pred chHHHHHHHHHhHHHHH
Confidence 34556666666666443
No 32
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=25.48 E-value=41 Score=32.76 Aligned_cols=20 Identities=35% Similarity=0.466 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHhcC
Q 024139 215 HYVKFLKTQVQSLERAAANR 234 (272)
Q Consensus 215 dYIk~Lq~qV~~LE~~~~~~ 234 (272)
+|||-|+.+|..||.+++.+
T Consensus 312 EYVKCLENRVAVLENQNKaL 331 (348)
T KOG3584|consen 312 EYVKCLENRVAVLENQNKAL 331 (348)
T ss_pred HHHHHHHhHHHHHhcccHHH
Confidence 78888888888888877643
No 33
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=25.37 E-value=77 Score=21.10 Aligned_cols=16 Identities=31% Similarity=0.686 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHhc
Q 024139 181 RHRRERISERIRILQR 196 (272)
Q Consensus 181 R~RRerIne~i~~Lrs 196 (272)
|+||+.++.++..||.
T Consensus 14 rrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 14 RRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHhc
Confidence 5788999999998875
No 34
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=25.08 E-value=87 Score=22.63 Aligned_cols=18 Identities=39% Similarity=0.495 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 024139 179 AARHRRERISERIRILQR 196 (272)
Q Consensus 179 ~ER~RRerIne~i~~Lrs 196 (272)
+.++=|.+-...+..|..
T Consensus 16 AAr~~R~RKk~~~~~Le~ 33 (64)
T PF00170_consen 16 AARRSRQRKKQYIEELEE 33 (64)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHH
Confidence 334444455555555553
No 35
>PF14992 TMCO5: TMCO5 family
Probab=23.58 E-value=1.1e+02 Score=29.40 Aligned_cols=25 Identities=16% Similarity=0.310 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 024139 209 MLDEAIHYVKFLKTQVQSLERAAAN 233 (272)
Q Consensus 209 IL~eAIdYIk~Lq~qV~~LE~~~~~ 233 (272)
+..+++.||+.||+.++++|++.+.
T Consensus 145 l~eDq~~~i~klkE~L~rmE~ekE~ 169 (280)
T PF14992_consen 145 LCEDQANEIKKLKEKLRRMEEEKEM 169 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4889999999999999999997664
No 36
>KOG3896 consensus Dynactin, subunit p62 [Cell motility]
Probab=22.88 E-value=1.2e+02 Score=30.37 Aligned_cols=28 Identities=18% Similarity=0.348 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 024139 208 SMLDEAIHYVKFLKTQVQSLERAAANRP 235 (272)
Q Consensus 208 sIL~eAIdYIk~Lq~qV~~LE~~~~~~~ 235 (272)
.-|.+-|+|.+.|++.++++|..+....
T Consensus 139 ~r~n~l~eY~q~Laek~Ek~e~drkK~a 166 (449)
T KOG3896|consen 139 NRLNELTEYMQRLAEKIEKAEKDRKKGA 166 (449)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHhccc
Confidence 3467789999999999999999877633
No 37
>TIGR00986 3a0801s05tom22 mitochondrial import receptor subunit Tom22. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom22 proteins.
Probab=22.42 E-value=51 Score=28.81 Aligned_cols=35 Identities=26% Similarity=0.352 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhccCCCCCCCChhhHHHHHHHHHH
Q 024139 184 RERISERIRILQRLVPGGTKMDTASMLDEAIHYVK 218 (272)
Q Consensus 184 RerIne~i~~LrsLVP~~~K~DKasIL~eAIdYIk 218 (272)
-|-|-+||-.|+.+||.....--.+....+..++|
T Consensus 48 ~ETl~ERi~ALkDm~Pp~~R~~i~~~~s~t~s~~k 82 (145)
T TIGR00986 48 EETFTDRIYALKDIVPPTTRGWIYHKYSTTTNFVK 82 (145)
T ss_pred cCcHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999995543333333333333333
No 38
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=22.02 E-value=1.8e+02 Score=27.82 Aligned_cols=52 Identities=13% Similarity=0.170 Sum_probs=29.4
Q ss_pred cHHHHHHHHHHHHHHHHHhccCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 024139 177 SVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERAAANR 234 (272)
Q Consensus 177 s~~ER~RRerIne~i~~LrsLVP~~~K~DKasIL~eAIdYIk~Lq~qV~~LE~~~~~~ 234 (272)
+.-||--|.|++.+..+=-+ .-.|-.-.++-=+-|+.|.++.+.|..+++..
T Consensus 65 S~EEK~~RrKLKNRVAAQta------RDrKKaRm~eme~~i~dL~een~~L~~en~~L 116 (292)
T KOG4005|consen 65 SWEEKVQRRKLKNRVAAQTA------RDRKKARMEEMEYEIKDLTEENEILQNENDSL 116 (292)
T ss_pred CHHHHHHHHHHHHHHHHhhh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788778888877654321 11122333333344666777776666665543
No 39
>PHA03011 hypothetical protein; Provisional
Probab=21.87 E-value=1.2e+02 Score=25.36 Aligned_cols=30 Identities=20% Similarity=0.406 Sum_probs=26.3
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 024139 205 DTASMLDEAIHYVKFLKTQVQSLERAAANR 234 (272)
Q Consensus 205 DKasIL~eAIdYIk~Lq~qV~~LE~~~~~~ 234 (272)
|-.-++++-.+.|++|+.++.+|++..++.
T Consensus 89 ~~~~iIQdn~d~I~~LraeIDkLK~niaN~ 118 (120)
T PHA03011 89 DLEIIIQDNDDEIHFLRAEIDKLKENIANL 118 (120)
T ss_pred HHHHHHHhchHHHHHHHHHHHHHHHHHhcc
Confidence 566789999999999999999999987754
No 40
>PF11800 RP-C_C: Replication protein C C-terminal region; InterPro: IPR021760 Replication protein C is involved in the early stages of viral DNA replication.
Probab=21.78 E-value=3.9e+02 Score=23.66 Aligned_cols=43 Identities=23% Similarity=0.368 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhccCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 024139 185 ERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERA 230 (272)
Q Consensus 185 erIne~i~~LrsLVP~~~K~DKasIL~eAIdYIk~Lq~qV~~LE~~ 230 (272)
+.|.++|..|...+|- +. +..-|+..++-+..|..+|..+=+.
T Consensus 4 ~~~~~~~~~l~~~L~R--~~-~~~~L~~l~~~L~~l~~~v~~~le~ 46 (207)
T PF11800_consen 4 EAIEDRFQALRRRLPR--KA-SLADLEALLDELEALLEEVENALES 46 (207)
T ss_pred HHHHHHHHHHHHHcCC--CC-CHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5678899999999993 33 4444899999999999888876554
No 41
>PRK06835 DNA replication protein DnaC; Validated
Probab=21.00 E-value=72 Score=30.71 Aligned_cols=38 Identities=21% Similarity=0.243 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcCcccccCCCCCCc
Q 024139 214 IHYVKFLKTQVQSLERAAANRPAGIGFPATLTTGNYPP 251 (272)
Q Consensus 214 IdYIk~Lq~qV~~LE~~~~~~~~~~~~~~~~~~~~y~~ 251 (272)
-+.+..|++++++|.++....=..-|||.-.-...|.+
T Consensus 64 ~~~~~~l~~~~~~l~~~~~~lL~~~g~~~dyl~~~y~C 101 (329)
T PRK06835 64 EETLKELKEKITDLRVKKAELLVSNGYPPDYLEMKYTC 101 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCChhhcCCCCCC
Confidence 56788999999999998887777889997644545544
No 42
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=20.74 E-value=1e+02 Score=23.71 Aligned_cols=52 Identities=19% Similarity=0.325 Sum_probs=36.3
Q ss_pred ccHHHHHHHHHHHHHHHHHhccCCCCCCCC-hhhHHHHHHHHHHHHHHHHHHHHH
Q 024139 176 QSVAARHRRERISERIRILQRLVPGGTKMD-TASMLDEAIHYVKFLKTQVQSLER 229 (272)
Q Consensus 176 Hs~~ER~RRerIne~i~~LrsLVP~~~K~D-KasIL~eAIdYIk~Lq~qV~~LE~ 229 (272)
....|+.=|..+...+..| .||+-- ..| -..+|.++-+-|..|+.+|..||.
T Consensus 26 ~~e~e~~~r~~l~~~l~kl-dlVtRE-EFd~q~~~L~~~r~kl~~LEarl~~LE~ 78 (79)
T PF04380_consen 26 REEIEKNIRARLQSALSKL-DLVTRE-EFDAQKAVLARTREKLEALEARLAALEA 78 (79)
T ss_pred HHHHHHHHHHHHHHHHHHC-CCCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456777777777776664 344422 112 556899999999999999999985
No 43
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=20.37 E-value=1.1e+02 Score=21.92 Aligned_cols=19 Identities=16% Similarity=0.357 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q 024139 216 YVKFLKTQVQSLERAAANR 234 (272)
Q Consensus 216 YIk~Lq~qV~~LE~~~~~~ 234 (272)
.++.++++++++|.+.+..
T Consensus 49 ~~~~~~k~l~~le~e~~~l 67 (68)
T PF06305_consen 49 RIRRLRKELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3566777777777776643
Done!