Query 024139
Match_columns 272
No_of_seqs 172 out of 987
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 03:04:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024139.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024139hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.6 2.2E-16 7.5E-21 121.3 7.3 61 174-234 8-69 (82)
2 4ati_A MITF, microphthalmia-as 99.6 1.3E-15 4.6E-20 124.3 7.8 61 172-232 27-91 (118)
3 4h10_B Circadian locomoter out 99.5 4.3E-15 1.5E-19 112.2 5.9 55 174-228 10-65 (71)
4 1a0a_A BHLH, protein (phosphat 99.5 6.7E-16 2.3E-20 113.7 1.3 53 173-225 3-62 (63)
5 1an4_A Protein (upstream stimu 99.5 2.5E-15 8.4E-20 110.1 2.8 53 173-225 6-64 (65)
6 1hlo_A Protein (transcription 99.5 1.7E-14 5.9E-19 109.8 6.9 60 174-233 14-75 (80)
7 1nkp_B MAX protein, MYC proto- 99.5 2.8E-14 9.5E-19 109.1 7.4 61 174-234 4-66 (83)
8 4h10_A ARYL hydrocarbon recept 99.5 4E-15 1.4E-19 112.7 0.9 49 174-222 11-63 (73)
9 1nkp_A C-MYC, MYC proto-oncoge 99.5 5.8E-14 2E-18 109.3 7.1 59 174-232 8-69 (88)
10 3u5v_A Protein MAX, transcript 99.4 1.2E-13 4E-18 105.3 4.3 56 174-229 7-66 (76)
11 1nlw_A MAD protein, MAX dimeri 99.4 1.2E-12 4.2E-17 100.3 7.8 60 175-234 4-66 (80)
12 1mdy_A Protein (MYOD BHLH doma 99.1 3.3E-11 1.1E-15 90.0 2.6 52 174-225 14-67 (68)
13 4f3l_A Mclock, circadian locom 99.0 2.7E-10 9.2E-15 105.5 5.9 50 174-223 14-64 (361)
14 2ql2_B Neurod1, neurogenic dif 99.0 4.9E-10 1.7E-14 81.7 5.8 51 175-225 5-58 (60)
15 4f3l_B BMAL1B; BHLH, PAS, circ 98.9 5.7E-10 1.9E-14 104.7 3.1 51 173-223 14-68 (387)
16 4ath_A MITF, microphthalmia-as 98.8 8.7E-09 3E-13 79.9 6.5 49 184-232 4-56 (83)
17 2lfh_A DNA-binding protein inh 98.6 1.2E-08 4.1E-13 76.4 1.7 44 179-222 21-67 (68)
18 4aya_A DNA-binding protein inh 98.1 4.7E-06 1.6E-10 66.2 6.3 48 180-227 33-83 (97)
19 2wt7_A Proto-oncogene protein 61.6 19 0.00067 25.4 5.7 41 180-233 1-41 (63)
20 3muj_A Transcription factor CO 52.5 18 0.00062 30.1 4.8 35 186-220 95-133 (138)
21 2er8_A Regulatory protein Leu3 45.0 18 0.00061 25.2 3.2 21 215-235 49-69 (72)
22 1dh3_A Transcription factor CR 43.0 19 0.00065 25.1 3.0 21 215-235 22-42 (55)
23 3fx7_A Putative uncharacterize 39.7 65 0.0022 25.1 5.9 40 184-231 47-86 (94)
24 1gd2_E Transcription factor PA 37.1 25 0.00086 25.8 3.0 17 215-231 29-45 (70)
25 1zme_C Proline utilization tra 35.2 29 0.00099 23.8 3.0 18 215-232 44-61 (70)
26 2jee_A YIIU; FTSZ, septum, coi 35.1 37 0.0013 25.8 3.7 24 210-233 15-38 (81)
27 1hwt_C Protein (heme activator 30.8 18 0.00063 25.6 1.4 20 214-233 57-76 (81)
28 1xkm_B Distinctin chain B; por 28.6 62 0.0021 19.3 3.1 19 207-225 3-21 (26)
29 2oqq_A Transcription factor HY 27.3 45 0.0015 22.5 2.6 17 216-232 4-20 (42)
30 1pyi_A Protein (pyrimidine pat 26.7 58 0.002 23.7 3.6 23 214-236 47-69 (96)
31 1gk7_A Vimentin; intermediate 26.5 75 0.0026 20.7 3.6 23 210-232 15-37 (39)
32 1a7t_A Metallo-beta-lactamase; 26.1 43 0.0015 27.6 3.0 32 195-226 200-231 (232)
33 2dgc_A Protein (GCN4); basic d 25.6 53 0.0018 23.3 3.0 19 215-233 30-48 (63)
34 1m2x_A Class B carbapenemase B 25.1 20 0.00069 29.4 0.8 31 196-226 191-221 (223)
35 3he4_B Synzip5; heterodimeric 23.6 1E+02 0.0035 20.6 3.8 22 211-232 6-27 (46)
36 2ke4_A CDC42-interacting prote 23.1 1.4E+02 0.0047 23.1 5.2 28 205-232 59-86 (98)
37 1d66_A Protein (GAL4); protein 23.0 21 0.00073 24.1 0.4 15 214-228 51-65 (66)
38 1jnm_A Proto-oncogene C-JUN; B 22.4 66 0.0023 22.4 3.0 13 220-232 41-53 (62)
39 2l5g_A GPS2 protein, G protein 21.7 1.5E+02 0.0051 19.5 4.3 28 204-231 4-31 (38)
40 3k29_A Putative uncharacterize 21.0 1E+02 0.0035 26.4 4.3 41 189-232 55-95 (169)
41 2fhx_A SPM-1; metallo-beta-lac 20.6 49 0.0017 27.3 2.3 30 196-225 216-245 (246)
42 3coq_A Regulatory protein GAL4 20.4 74 0.0025 22.6 3.0 24 214-237 44-67 (89)
43 1pd7_B MAD1; PAH2, SIN3, eukar 20.1 1.2E+02 0.004 18.5 3.2 20 203-222 1-20 (26)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.65 E-value=2.2e-16 Score=121.30 Aligned_cols=61 Identities=26% Similarity=0.483 Sum_probs=57.5
Q ss_pred CcccHHHHHHHHHHHHHHHHHhccCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 024139 174 DPQSVAARHRRERISERIRILQRLVPGG-TKMDTASMLDEAIHYVKFLKTQVQSLERAAANR 234 (272)
Q Consensus 174 ~~Hs~~ER~RRerIne~i~~LrsLVP~~-~K~DKasIL~eAIdYIk~Lq~qV~~LE~~~~~~ 234 (272)
..|+.+||+||++||++|..|++|||++ .|+||++||++||+||++|+.+++.|+++++..
T Consensus 8 ~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L 69 (82)
T 1am9_A 8 TAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSL 69 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999987 899999999999999999999999999987653
No 2
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.60 E-value=1.3e-15 Score=124.34 Aligned_cols=61 Identities=25% Similarity=0.487 Sum_probs=53.1
Q ss_pred CCCcccHHHHHHHHHHHHHHHHHhccCCCCC----CCChhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 024139 172 SKDPQSVAARHRRERISERIRILQRLVPGGT----KMDTASMLDEAIHYVKFLKTQVQSLERAAA 232 (272)
Q Consensus 172 s~~~Hs~~ER~RRerIne~i~~LrsLVP~~~----K~DKasIL~eAIdYIk~Lq~qV~~LE~~~~ 232 (272)
.+..|+.+||+||++||++|..|+.|||++. |++|++||++||+||++||.+++.|++...
T Consensus 27 kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~ 91 (118)
T 4ati_A 27 KKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLEN 91 (118)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467999999999999999999999999873 678999999999999999999999998644
No 3
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.55 E-value=4.3e-15 Score=112.17 Aligned_cols=55 Identities=25% Similarity=0.471 Sum_probs=51.2
Q ss_pred CcccHHHHHHHHHHHHHHHHHhccCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHH
Q 024139 174 DPQSVAARHRRERISERIRILQRLVPGG-TKMDTASMLDEAIHYVKFLKTQVQSLE 228 (272)
Q Consensus 174 ~~Hs~~ER~RRerIne~i~~LrsLVP~~-~K~DKasIL~eAIdYIk~Lq~qV~~LE 228 (272)
..|+.+||+||++||++|.+|++|||++ .|+||++||+.||+||++||.++.=||
T Consensus 10 ~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 10 VSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 5699999999999999999999999975 699999999999999999999987664
No 4
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.55 E-value=6.7e-16 Score=113.67 Aligned_cols=53 Identities=21% Similarity=0.429 Sum_probs=48.1
Q ss_pred CCcccHHHHHHHHHHHHHHHHHhccCCCC-------CCCChhhHHHHHHHHHHHHHHHHH
Q 024139 173 KDPQSVAARHRRERISERIRILQRLVPGG-------TKMDTASMLDEAIHYVKFLKTQVQ 225 (272)
Q Consensus 173 ~~~Hs~~ER~RRerIne~i~~LrsLVP~~-------~K~DKasIL~eAIdYIk~Lq~qV~ 225 (272)
+..|..+||+||++||.+|..|+.|||++ .|.+||+||+.||+||++||++|+
T Consensus 3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~ 62 (63)
T 1a0a_A 3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62 (63)
T ss_dssp TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence 36799999999999999999999999954 577899999999999999998764
No 5
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.53 E-value=2.5e-15 Score=110.15 Aligned_cols=53 Identities=21% Similarity=0.456 Sum_probs=48.7
Q ss_pred CCcccHHHHHHHHHHHHHHHHHhccCCCCC------CCChhhHHHHHHHHHHHHHHHHH
Q 024139 173 KDPQSVAARHRRERISERIRILQRLVPGGT------KMDTASMLDEAIHYVKFLKTQVQ 225 (272)
Q Consensus 173 ~~~Hs~~ER~RRerIne~i~~LrsLVP~~~------K~DKasIL~eAIdYIk~Lq~qV~ 225 (272)
+..|+.+||+||++||++|..|+.|||.+. |+||++||++||+||++||++++
T Consensus 6 r~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~~ 64 (65)
T 1an4_A 6 RAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64 (65)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTTC
T ss_pred HHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 357999999999999999999999999874 78999999999999999998754
No 6
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.52 E-value=1.7e-14 Score=109.83 Aligned_cols=60 Identities=22% Similarity=0.450 Sum_probs=56.5
Q ss_pred CcccHHHHHHHHHHHHHHHHHhccCCCC--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024139 174 DPQSVAARHRRERISERIRILQRLVPGG--TKMDTASMLDEAIHYVKFLKTQVQSLERAAAN 233 (272)
Q Consensus 174 ~~Hs~~ER~RRerIne~i~~LrsLVP~~--~K~DKasIL~eAIdYIk~Lq~qV~~LE~~~~~ 233 (272)
..|+..||+||..||++|..|+.+||.+ .|++|++||..||+||+.|+.++++|+.+.+.
T Consensus 14 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~ 75 (80)
T 1hlo_A 14 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDD 75 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999975 79999999999999999999999999998764
No 7
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.51 E-value=2.8e-14 Score=109.11 Aligned_cols=61 Identities=23% Similarity=0.491 Sum_probs=56.0
Q ss_pred CcccHHHHHHHHHHHHHHHHHhccCCC--CCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 024139 174 DPQSVAARHRRERISERIRILQRLVPG--GTKMDTASMLDEAIHYVKFLKTQVQSLERAAANR 234 (272)
Q Consensus 174 ~~Hs~~ER~RRerIne~i~~LrsLVP~--~~K~DKasIL~eAIdYIk~Lq~qV~~LE~~~~~~ 234 (272)
..|+..||+||++||++|..|+++||. +.|++|++||..||+||++|+.+++.|+.+.+..
T Consensus 4 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L 66 (83)
T 1nkp_B 4 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDL 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 359999999999999999999999997 4899999999999999999999999998876653
No 8
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.48 E-value=4e-15 Score=112.69 Aligned_cols=49 Identities=29% Similarity=0.450 Sum_probs=46.1
Q ss_pred CcccHHHHHHHHHHHHHHHHHhccCCCC----CCCChhhHHHHHHHHHHHHHH
Q 024139 174 DPQSVAARHRRERISERIRILQRLVPGG----TKMDTASMLDEAIHYVKFLKT 222 (272)
Q Consensus 174 ~~Hs~~ER~RRerIne~i~~LrsLVP~~----~K~DKasIL~eAIdYIk~Lq~ 222 (272)
..|+.+||+||++||++|.+|+.|||.+ .|+|||+||+.||+||+.|+.
T Consensus 11 ~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 11 EAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 5699999999999999999999999965 799999999999999999974
No 9
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.47 E-value=5.8e-14 Score=109.31 Aligned_cols=59 Identities=20% Similarity=0.303 Sum_probs=54.0
Q ss_pred CcccHHHHHHHHHHHHHHHHHhccCCCC---CCCChhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 024139 174 DPQSVAARHRRERISERIRILQRLVPGG---TKMDTASMLDEAIHYVKFLKTQVQSLERAAA 232 (272)
Q Consensus 174 ~~Hs~~ER~RRerIne~i~~LrsLVP~~---~K~DKasIL~eAIdYIk~Lq~qV~~LE~~~~ 232 (272)
..|+..||+||+.||++|..|+.+||.. .|++|++||.+||+||++|+.+++.|+.+.+
T Consensus 8 ~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~ 69 (88)
T 1nkp_A 8 RTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEED 69 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3599999999999999999999999964 6999999999999999999999998877654
No 10
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.41 E-value=1.2e-13 Score=105.31 Aligned_cols=56 Identities=25% Similarity=0.310 Sum_probs=49.4
Q ss_pred CcccHHHHHHHHHHHHHHHHHhccCCC---CCCC-ChhhHHHHHHHHHHHHHHHHHHHHH
Q 024139 174 DPQSVAARHRRERISERIRILQRLVPG---GTKM-DTASMLDEAIHYVKFLKTQVQSLER 229 (272)
Q Consensus 174 ~~Hs~~ER~RRerIne~i~~LrsLVP~---~~K~-DKasIL~eAIdYIk~Lq~qV~~LE~ 229 (272)
..|+..||+||+.||++|..|+.+||. +.|. .|+.||..||+||++|+++|++++.
T Consensus 7 ~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~ 66 (76)
T 3u5v_A 7 AHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNL 66 (76)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred hhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 469999999999999999999999994 4555 7999999999999999999998753
No 11
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.37 E-value=1.2e-12 Score=100.34 Aligned_cols=60 Identities=22% Similarity=0.270 Sum_probs=55.2
Q ss_pred cccHHHHHHHHHHHHHHHHHhccCCCC---CCCChhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 024139 175 PQSVAARHRRERISERIRILQRLVPGG---TKMDTASMLDEAIHYVKFLKTQVQSLERAAANR 234 (272)
Q Consensus 175 ~Hs~~ER~RRerIne~i~~LrsLVP~~---~K~DKasIL~eAIdYIk~Lq~qV~~LE~~~~~~ 234 (272)
.|+..||+||..||++|..|+++||.+ .|.+|+.||.+|++||+.|+.+++.|+.+.+..
T Consensus 4 ~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L 66 (80)
T 1nlw_A 4 THNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQL 66 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999954 788999999999999999999999999886643
No 12
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.08 E-value=3.3e-11 Score=90.00 Aligned_cols=52 Identities=19% Similarity=0.417 Sum_probs=47.6
Q ss_pred CcccHHHHHHHHHHHHHHHHHhccCCCC--CCCChhhHHHHHHHHHHHHHHHHH
Q 024139 174 DPQSVAARHRRERISERIRILQRLVPGG--TKMDTASMLDEAIHYVKFLKTQVQ 225 (272)
Q Consensus 174 ~~Hs~~ER~RRerIne~i~~LrsLVP~~--~K~DKasIL~eAIdYIk~Lq~qV~ 225 (272)
..|+..||+|+..||+.|..|+.+||.. .|++|+.||..||+||.+|++.++
T Consensus 14 ~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L~ 67 (68)
T 1mdy_A 14 KAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 4589999999999999999999999964 799999999999999999998653
No 13
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.00 E-value=2.7e-10 Score=105.49 Aligned_cols=50 Identities=22% Similarity=0.463 Sum_probs=42.5
Q ss_pred CcccHHHHHHHHHHHHHHHHHhccCC-CCCCCChhhHHHHHHHHHHHHHHH
Q 024139 174 DPQSVAARHRRERISERIRILQRLVP-GGTKMDTASMLDEAIHYVKFLKTQ 223 (272)
Q Consensus 174 ~~Hs~~ER~RRerIne~i~~LrsLVP-~~~K~DKasIL~eAIdYIk~Lq~q 223 (272)
..|+.+||+||++||+.|.+|++||| ...|+||++||..||+|||.|+..
T Consensus 14 ~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 14 VSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKET 64 (361)
T ss_dssp -----CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhh
Confidence 56999999999999999999999999 458999999999999999999864
No 14
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.00 E-value=4.9e-10 Score=81.69 Aligned_cols=51 Identities=20% Similarity=0.289 Sum_probs=46.8
Q ss_pred cccHHHHHHHHHHHHHHHHHhccCCCC---CCCChhhHHHHHHHHHHHHHHHHH
Q 024139 175 PQSVAARHRRERISERIRILQRLVPGG---TKMDTASMLDEAIHYVKFLKTQVQ 225 (272)
Q Consensus 175 ~Hs~~ER~RRerIne~i~~LrsLVP~~---~K~DKasIL~eAIdYIk~Lq~qV~ 225 (272)
.|+..||+|+..||+.|..|+.+||.. .|++|+.+|..||+||+.|++.++
T Consensus 5 ~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 5 KANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 378999999999999999999999954 789999999999999999998764
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.88 E-value=5.7e-10 Score=104.69 Aligned_cols=51 Identities=27% Similarity=0.449 Sum_probs=47.2
Q ss_pred CCcccHHHHHHHHHHHHHHHHHhccCC----CCCCCChhhHHHHHHHHHHHHHHH
Q 024139 173 KDPQSVAARHRRERISERIRILQRLVP----GGTKMDTASMLDEAIHYVKFLKTQ 223 (272)
Q Consensus 173 ~~~Hs~~ER~RRerIne~i~~LrsLVP----~~~K~DKasIL~eAIdYIk~Lq~q 223 (272)
++.|+.+||+||++||+.|.+|+.||| ...|+||++||..||+|||.|+..
T Consensus 14 ~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 14 REAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC
T ss_pred cccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhcc
Confidence 367999999999999999999999999 568999999999999999999843
No 16
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.79 E-value=8.7e-09 Score=79.86 Aligned_cols=49 Identities=22% Similarity=0.462 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhccCCCC----CCCChhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 024139 184 RERISERIRILQRLVPGG----TKMDTASMLDEAIHYVKFLKTQVQSLERAAA 232 (272)
Q Consensus 184 RerIne~i~~LrsLVP~~----~K~DKasIL~eAIdYIk~Lq~qV~~LE~~~~ 232 (272)
|..||++|.+|..|||.+ .|.+|++||..|||||++||..++.+.++..
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e~ 56 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLEN 56 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999964 5688999999999999999998887766544
No 17
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.59 E-value=1.2e-08 Score=76.44 Aligned_cols=44 Identities=23% Similarity=0.366 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHhccCCCC---CCCChhhHHHHHHHHHHHHHH
Q 024139 179 AARHRRERISERIRILQRLVPGG---TKMDTASMLDEAIHYVKFLKT 222 (272)
Q Consensus 179 ~ER~RRerIne~i~~LrsLVP~~---~K~DKasIL~eAIdYIk~Lq~ 222 (272)
-||+|+..||+.|..||.+||.. .|++|..+|..||+||..||.
T Consensus 21 rER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 21 EPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 38889999999999999999954 799999999999999999984
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=98.11 E-value=4.7e-06 Score=66.25 Aligned_cols=48 Identities=21% Similarity=0.304 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHhccCCC---CCCCChhhHHHHHHHHHHHHHHHHHHH
Q 024139 180 ARHRRERISERIRILQRLVPG---GTKMDTASMLDEAIHYVKFLKTQVQSL 227 (272)
Q Consensus 180 ER~RRerIne~i~~LrsLVP~---~~K~DKasIL~eAIdYIk~Lq~qV~~L 227 (272)
||.|=..+|+.|..||.+||. ..|+.|..+|..||+||..|++.++.-
T Consensus 33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~~ 83 (97)
T 4aya_A 33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDSH 83 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 567778899999999999995 478999999999999999999887653
No 19
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=61.64 E-value=19 Score=25.41 Aligned_cols=41 Identities=12% Similarity=0.191 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024139 180 ARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERAAAN 233 (272)
Q Consensus 180 ER~RRerIne~i~~LrsLVP~~~K~DKasIL~eAIdYIk~Lq~qV~~LE~~~~~ 233 (272)
||++|.+...++.+.+. =..-.+|+..|+.+|..|+.++..
T Consensus 1 Ekr~rrrerNR~AA~rc-------------R~rKk~~~~~Le~~v~~L~~~n~~ 41 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKC-------------RNRRRELTDTLQAETDQLEDEKSA 41 (63)
T ss_dssp CHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555666665554 123345555666666665555543
No 20
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=52.54 E-value=18 Score=30.12 Aligned_cols=35 Identities=23% Similarity=0.380 Sum_probs=30.1
Q ss_pred HHHHHHHHHhccCCC----CCCCChhhHHHHHHHHHHHH
Q 024139 186 RISERIRILQRLVPG----GTKMDTASMLDEAIHYVKFL 220 (272)
Q Consensus 186 rIne~i~~LrsLVP~----~~K~DKasIL~eAIdYIk~L 220 (272)
.|.-.|..|+.+||. -.++-|..||..|.|+++.|
T Consensus 95 tId~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~ 133 (138)
T 3muj_A 95 TIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEAL 133 (138)
T ss_dssp CHHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHH
T ss_pred ccccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHH
Confidence 478899999999993 26678999999999998876
No 21
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=44.95 E-value=18 Score=25.23 Aligned_cols=21 Identities=14% Similarity=0.189 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCC
Q 024139 215 HYVKFLKTQVQSLERAAANRP 235 (272)
Q Consensus 215 dYIk~Lq~qV~~LE~~~~~~~ 235 (272)
.||..|+.+|+.||...+...
T Consensus 49 ~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999877543
No 22
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=42.98 E-value=19 Score=25.05 Aligned_cols=21 Identities=33% Similarity=0.384 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCC
Q 024139 215 HYVKFLKTQVQSLERAAANRP 235 (272)
Q Consensus 215 dYIk~Lq~qV~~LE~~~~~~~ 235 (272)
.||..|+.+|..|+.++....
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~ 42 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLI 42 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 688888888888888776543
No 23
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=39.74 E-value=65 Score=25.08 Aligned_cols=40 Identities=23% Similarity=0.352 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhccCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 024139 184 RERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERAA 231 (272)
Q Consensus 184 RerIne~i~~LrsLVP~~~K~DKasIL~eAIdYIk~Lq~qV~~LE~~~ 231 (272)
|++..+.|..|.+.+ .-..+.|=+||.+|+++++.||+..
T Consensus 47 r~kFee~fe~l~s~l--------~~f~e~a~e~vp~L~~~i~vle~~~ 86 (94)
T 3fx7_A 47 RDKFSEVLDNLKSTF--------NEFDEAAQEQIAWLKERIRVLEEDY 86 (94)
T ss_dssp HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--------HHHHHhhHHHhHHHHHHHHHhHHHH
Confidence 345555555555422 1234578899999999999999853
No 24
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=37.13 E-value=25 Score=25.84 Aligned_cols=17 Identities=35% Similarity=0.360 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024139 215 HYVKFLKTQVQSLERAA 231 (272)
Q Consensus 215 dYIk~Lq~qV~~LE~~~ 231 (272)
.||+.|+.+|..|+...
T Consensus 29 ~~i~~LE~~v~~le~~~ 45 (70)
T 1gd2_E 29 DHLKALETQVVTLKELH 45 (70)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46666666666665543
No 25
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=35.20 E-value=29 Score=23.84 Aligned_cols=18 Identities=11% Similarity=0.302 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 024139 215 HYVKFLKTQVQSLERAAA 232 (272)
Q Consensus 215 dYIk~Lq~qV~~LE~~~~ 232 (272)
.||..|+.+|+.||...+
T Consensus 44 ~~~~~L~~ri~~Le~~l~ 61 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENN 61 (70)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 355555555555555443
No 26
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=35.12 E-value=37 Score=25.83 Aligned_cols=24 Identities=17% Similarity=0.440 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 024139 210 LDEAIHYVKFLKTQVQSLERAAAN 233 (272)
Q Consensus 210 L~eAIdYIk~Lq~qV~~LE~~~~~ 233 (272)
++.||+-|.-||.+|++|++.+..
T Consensus 15 Iq~avdtI~lLqmEieELKekN~~ 38 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNNS 38 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999888887654
No 27
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=30.79 E-value=18 Score=25.62 Aligned_cols=20 Identities=30% Similarity=0.388 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 024139 214 IHYVKFLKTQVQSLERAAAN 233 (272)
Q Consensus 214 IdYIk~Lq~qV~~LE~~~~~ 233 (272)
-.||..|+.+|+.||.....
T Consensus 57 ~~~~~~L~~ri~~LE~~l~~ 76 (81)
T 1hwt_C 57 DNELKKLRERVKSLEKTLSK 76 (81)
T ss_dssp HHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999976554
No 28
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=28.60 E-value=62 Score=19.34 Aligned_cols=19 Identities=32% Similarity=0.363 Sum_probs=14.5
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 024139 207 ASMLDEAIHYVKFLKTQVQ 225 (272)
Q Consensus 207 asIL~eAIdYIk~Lq~qV~ 225 (272)
.+-|-+|-.|+.+|+.+++
T Consensus 3 vsgliearkyleqlhrklk 21 (26)
T 1xkm_B 3 VSGLIEARKYLEQLHRKLK 21 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHh
Confidence 4567788889888887765
No 29
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=27.33 E-value=45 Score=22.49 Aligned_cols=17 Identities=29% Similarity=0.524 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHh
Q 024139 216 YVKFLKTQVQSLERAAA 232 (272)
Q Consensus 216 YIk~Lq~qV~~LE~~~~ 232 (272)
|+-.|+.+++.||..++
T Consensus 4 Yl~eLE~r~k~le~~na 20 (42)
T 2oqq_A 4 YLSELENRVKDLENKNS 20 (42)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 67777777777666544
No 30
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=26.75 E-value=58 Score=23.68 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCC
Q 024139 214 IHYVKFLKTQVQSLERAAANRPA 236 (272)
Q Consensus 214 IdYIk~Lq~qV~~LE~~~~~~~~ 236 (272)
-.||+.|+.+|+.||........
T Consensus 47 ~~~~~~Le~rl~~le~~l~~~~~ 69 (96)
T 1pyi_A 47 RSYVFFLEDRLAVMMRVLKEYGV 69 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC
Confidence 35999999999999998876543
No 31
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=26.48 E-value=75 Score=20.71 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 024139 210 LDEAIHYVKFLKTQVQSLERAAA 232 (272)
Q Consensus 210 L~eAIdYIk~Lq~qV~~LE~~~~ 232 (272)
|..-|+-|++|+++.+.||.+-.
T Consensus 15 lAsyidkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 15 FANYIDKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45568889999999999998653
No 32
>1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES; 1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB: 1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A 1hlk_A*
Probab=26.15 E-value=43 Score=27.63 Aligned_cols=32 Identities=13% Similarity=0.258 Sum_probs=22.9
Q ss_pred hccCCCCCCCChhhHHHHHHHHHHHHHHHHHH
Q 024139 195 QRLVPGGTKMDTASMLDEAIHYVKFLKTQVQS 226 (272)
Q Consensus 195 rsLVP~~~K~DKasIL~eAIdYIk~Lq~qV~~ 226 (272)
..++|+=...-....++.+++||+.|++++.+
T Consensus 200 ~~v~pgHg~~~~~~~~~~~~~~l~~~~~~~~~ 231 (232)
T 1a7t_A 200 RYVVPGHGNYGGTELIEHTKQIVNQYIESTSK 231 (232)
T ss_dssp SEEEESSSCCBCTHHHHHHHHHHHHHHHHHC-
T ss_pred CEEECCCCCcccHHHHHHHHHHHHHHHHHhcC
Confidence 45677643333457899999999999988753
No 33
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=25.59 E-value=53 Score=23.35 Aligned_cols=19 Identities=21% Similarity=0.228 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 024139 215 HYVKFLKTQVQSLERAAAN 233 (272)
Q Consensus 215 dYIk~Lq~qV~~LE~~~~~ 233 (272)
+|+..|+.+|..|+.+++.
T Consensus 30 ~~~~~Le~~v~~L~~eN~~ 48 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYH 48 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555666666666555543
No 34
>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1
Probab=25.07 E-value=20 Score=29.42 Aligned_cols=31 Identities=6% Similarity=0.207 Sum_probs=21.3
Q ss_pred ccCCCCCCCChhhHHHHHHHHHHHHHHHHHH
Q 024139 196 RLVPGGTKMDTASMLDEAIHYVKFLKTQVQS 226 (272)
Q Consensus 196 sLVP~~~K~DKasIL~eAIdYIk~Lq~qV~~ 226 (272)
.++|+=...-....|+.+++|++.++++|++
T Consensus 191 ~i~pgHg~~~~~~~l~~~~~~l~~~~~~~~~ 221 (223)
T 1m2x_A 191 YVVAGHDDWKDQRSIQHTLDLINEYQQKQKA 221 (223)
T ss_dssp EEEESBSCCCSTTHHHHHHHHHHHHHHTC--
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHHHHHhc
Confidence 4667532222456899999999999998864
No 35
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=23.62 E-value=1e+02 Score=20.58 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 024139 211 DEAIHYVKFLKTQVQSLERAAA 232 (272)
Q Consensus 211 ~eAIdYIk~Lq~qV~~LE~~~~ 232 (272)
.+--+||++|+++..+|..-.+
T Consensus 6 kelknyiqeleernaelknlke 27 (46)
T 3he4_B 6 KELKNYIQELEERNAELKNLKE 27 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHhHHH
Confidence 4556899999998888776443
No 36
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=23.13 E-value=1.4e+02 Score=23.08 Aligned_cols=28 Identities=25% Similarity=0.264 Sum_probs=22.2
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 024139 205 DTASMLDEAIHYVKFLKTQVQSLERAAA 232 (272)
Q Consensus 205 DKasIL~eAIdYIk~Lq~qV~~LE~~~~ 232 (272)
.-..-|.++..-|..|+..+.+++...+
T Consensus 59 s~~~~L~e~~~kid~L~~el~K~q~~L~ 86 (98)
T 2ke4_A 59 SLEPQIAETLSNIERLKLEVQKYEAWLA 86 (98)
T ss_dssp GSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888899999999998887554
No 37
>1d66_A Protein (GAL4); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.70A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1aw6_A
Probab=22.98 E-value=21 Score=24.12 Aligned_cols=15 Identities=13% Similarity=0.213 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHH
Q 024139 214 IHYVKFLKTQVQSLE 228 (272)
Q Consensus 214 IdYIk~Lq~qV~~LE 228 (272)
..||..|+++|+.||
T Consensus 51 ~~~~~~Le~rl~~LE 65 (66)
T 1d66_A 51 RAHLTEVESRLERLE 65 (66)
T ss_dssp HHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHc
Confidence 569999999998886
No 38
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=22.45 E-value=66 Score=22.39 Aligned_cols=13 Identities=23% Similarity=0.299 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHh
Q 024139 220 LKTQVQSLERAAA 232 (272)
Q Consensus 220 Lq~qV~~LE~~~~ 232 (272)
|+.+|..|+.+..
T Consensus 41 L~~~v~~L~~e~~ 53 (62)
T 1jnm_A 41 LASTANMLREQVA 53 (62)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444555544444
No 39
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=21.68 E-value=1.5e+02 Score=19.49 Aligned_cols=28 Identities=18% Similarity=0.267 Sum_probs=24.1
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 024139 204 MDTASMLDEAIHYVKFLKTQVQSLERAA 231 (272)
Q Consensus 204 ~DKasIL~eAIdYIk~Lq~qV~~LE~~~ 231 (272)
+..+.-|+++-+-|..|+.+++.|.++.
T Consensus 4 ~ee~mTLeEtkeQi~~l~~kl~~LkeEK 31 (38)
T 2l5g_A 4 MEERMSLEETKEQILKLEEKLLALQEEK 31 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567789999999999999999998874
No 40
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=20.97 E-value=1e+02 Score=26.41 Aligned_cols=41 Identities=24% Similarity=0.374 Sum_probs=30.8
Q ss_pred HHHHHHhccCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 024139 189 ERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERAAA 232 (272)
Q Consensus 189 e~i~~LrsLVP~~~K~DKasIL~eAIdYIk~Lq~qV~~LE~~~~ 232 (272)
.++..|+..+-.|+-.|+.-+. =.||+-|+++...||...+
T Consensus 55 ~k~~qlre~~d~gtt~~~i~~m---~~yI~llrErea~lEqkVa 95 (169)
T 3k29_A 55 QKIRQLREQLDDGTTSDAILKM---KAYIKVVAIQLSEEEEKVN 95 (169)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 3488899988777776665544 4689999998888887654
No 41
>2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistanc hydrolase, metal binding protein; 1.90A {Pseudomonas aeruginosa}
Probab=20.56 E-value=49 Score=27.26 Aligned_cols=30 Identities=13% Similarity=0.294 Sum_probs=22.4
Q ss_pred ccCCCCCCCChhhHHHHHHHHHHHHHHHHH
Q 024139 196 RLVPGGTKMDTASMLDEAIHYVKFLKTQVQ 225 (272)
Q Consensus 196 sLVP~~~K~DKasIL~eAIdYIk~Lq~qV~ 225 (272)
.++|+=...-....|.++++||+.|+++|+
T Consensus 216 ~i~pgHg~~~~~~~l~~~~~~l~~l~~~v~ 245 (246)
T 2fhx_A 216 IVIPGHGEWGGPEMVNKTIKVAEKAVGEMR 245 (246)
T ss_dssp EEEESBSCCBSTHHHHHHHHHHHHHHHHHT
T ss_pred EEECCCCCcCCHHHHHHHHHHHHHHHHHhc
Confidence 466754333346789999999999999885
No 42
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=20.43 E-value=74 Score=22.63 Aligned_cols=24 Identities=8% Similarity=-0.047 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCC
Q 024139 214 IHYVKFLKTQVQSLERAAANRPAG 237 (272)
Q Consensus 214 IdYIk~Lq~qV~~LE~~~~~~~~~ 237 (272)
..||..|+++|+.||........+
T Consensus 44 ~~~~~~L~~r~~~le~~l~~l~~~ 67 (89)
T 3coq_A 44 RAHLTEVESRLERLEQLFLLIFPR 67 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCc
Confidence 358999999999999887765443
No 43
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=20.11 E-value=1.2e+02 Score=18.50 Aligned_cols=20 Identities=25% Similarity=0.165 Sum_probs=15.5
Q ss_pred CCChhhHHHHHHHHHHHHHH
Q 024139 203 KMDTASMLDEAIHYVKFLKT 222 (272)
Q Consensus 203 K~DKasIL~eAIdYIk~Lq~ 222 (272)
|+...-+|-+|.+||...++
T Consensus 1 ~~~nvq~LLeAAeyLErrEr 20 (26)
T 1pd7_B 1 VRMNIQMLLEAADYLERRER 20 (26)
T ss_dssp CCCSTHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHH
Confidence 34567789999999987665
Done!