Query 024140
Match_columns 272
No_of_seqs 79 out of 81
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 02:22:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024140.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024140hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08614 ATG16: Autophagy prot 96.9 0.025 5.4E-07 49.6 12.5 82 41-122 93-177 (194)
2 PF12718 Tropomyosin_1: Tropom 96.9 0.028 6.1E-07 47.9 12.3 78 35-113 6-83 (143)
3 PRK11637 AmiB activator; Provi 96.8 0.019 4E-07 55.6 12.5 109 11-128 17-135 (428)
4 PRK10884 SH3 domain-containing 96.7 0.024 5.2E-07 51.2 11.5 69 40-115 90-158 (206)
5 PF06637 PV-1: PV-1 protein (P 96.6 0.03 6.6E-07 55.5 12.2 64 52-115 287-375 (442)
6 COG2433 Uncharacterized conser 96.6 0.034 7.5E-07 57.6 12.8 84 38-121 424-513 (652)
7 PRK11637 AmiB activator; Provi 96.5 0.052 1.1E-06 52.6 13.1 68 43-114 68-135 (428)
8 PF08614 ATG16: Autophagy prot 96.4 0.034 7.4E-07 48.7 10.2 72 40-115 120-192 (194)
9 PF12329 TMF_DNA_bd: TATA elem 96.4 0.05 1.1E-06 41.9 9.6 65 54-118 2-69 (74)
10 PF11559 ADIP: Afadin- and alp 96.2 0.11 2.4E-06 43.6 11.5 30 52-81 75-104 (151)
11 PRK09039 hypothetical protein; 96.1 0.097 2.1E-06 50.2 12.4 88 40-127 113-204 (343)
12 PF10473 CENP-F_leu_zip: Leuci 96.0 0.41 8.8E-06 41.3 14.3 96 29-128 5-112 (140)
13 COG1579 Zn-ribbon protein, pos 95.7 0.19 4.2E-06 46.7 11.9 35 47-81 35-69 (239)
14 COG1579 Zn-ribbon protein, pos 95.7 0.34 7.3E-06 45.1 13.4 83 32-115 48-143 (239)
15 PHA02562 46 endonuclease subun 95.5 0.34 7.5E-06 47.4 13.6 97 19-115 142-246 (562)
16 PF11559 ADIP: Afadin- and alp 95.5 0.21 4.5E-06 41.9 10.5 68 46-117 55-122 (151)
17 PF10186 Atg14: UV radiation r 95.5 0.41 9E-06 42.7 12.9 86 42-127 62-154 (302)
18 PF05700 BCAS2: Breast carcino 95.3 0.85 1.8E-05 41.1 14.5 89 30-118 123-211 (221)
19 PF04156 IncA: IncA protein; 95.2 0.62 1.4E-05 39.9 12.8 79 40-118 85-166 (191)
20 PRK03918 chromosome segregatio 95.2 0.67 1.4E-05 48.0 15.1 94 21-114 154-263 (880)
21 TIGR03185 DNA_S_dndD DNA sulfu 95.1 0.5 1.1E-05 48.4 13.6 44 38-81 393-438 (650)
22 PF03148 Tektin: Tektin family 95.0 0.99 2.1E-05 43.9 14.9 98 28-125 236-353 (384)
23 KOG3990 Uncharacterized conser 95.0 0.1 2.2E-06 49.6 7.8 34 45-78 227-260 (305)
24 PRK02224 chromosome segregatio 94.9 0.8 1.7E-05 47.7 14.7 6 27-32 164-169 (880)
25 PF09789 DUF2353: Uncharacteri 94.7 0.35 7.6E-06 46.7 10.8 74 38-115 88-180 (319)
26 KOG0288 WD40 repeat protein Ti 94.6 0.43 9.4E-06 47.9 11.5 71 55-129 32-102 (459)
27 PF09755 DUF2046: Uncharacteri 94.6 0.84 1.8E-05 44.1 13.1 86 39-128 109-203 (310)
28 PF08647 BRE1: BRE1 E3 ubiquit 94.5 1.2 2.7E-05 35.4 11.9 79 45-127 5-90 (96)
29 PRK10884 SH3 domain-containing 94.5 0.53 1.2E-05 42.6 11.0 68 39-113 96-163 (206)
30 PF12718 Tropomyosin_1: Tropom 94.5 0.86 1.9E-05 38.9 11.6 78 38-115 37-127 (143)
31 KOG0977 Nuclear envelope prote 94.4 0.74 1.6E-05 47.4 13.0 80 31-110 95-190 (546)
32 PHA02562 46 endonuclease subun 94.4 0.52 1.1E-05 46.2 11.5 35 43-77 337-371 (562)
33 PF14197 Cep57_CLD_2: Centroso 94.4 0.68 1.5E-05 35.4 9.6 60 47-106 2-64 (69)
34 PF04111 APG6: Autophagy prote 94.3 0.79 1.7E-05 43.6 12.2 78 39-116 46-133 (314)
35 PF09726 Macoilin: Transmembra 94.3 0.47 1E-05 49.9 11.4 41 36-76 538-578 (697)
36 PF08172 CASP_C: CASP C termin 94.2 0.51 1.1E-05 43.8 10.4 84 46-129 2-139 (248)
37 PF00261 Tropomyosin: Tropomyo 94.0 1.4 3.1E-05 39.8 12.7 54 28-81 99-158 (237)
38 PF13851 GAS: Growth-arrest sp 94.0 2.5 5.5E-05 37.8 14.0 79 38-116 43-127 (201)
39 KOG2685 Cystoskeletal protein 94.0 2.3 5E-05 42.7 14.9 100 26-125 261-380 (421)
40 PF13870 DUF4201: Domain of un 93.9 2.4 5.3E-05 36.4 13.4 52 25-80 42-93 (177)
41 TIGR02169 SMC_prok_A chromosom 93.9 1 2.2E-05 47.3 13.1 26 89-114 896-921 (1164)
42 PF11180 DUF2968: Protein of u 93.8 1.2 2.6E-05 40.6 11.6 75 43-117 105-182 (192)
43 COG4026 Uncharacterized protei 93.8 1.4 3.1E-05 41.6 12.5 84 29-116 104-197 (290)
44 KOG0994 Extracellular matrix g 93.8 1.5 3.3E-05 49.2 14.3 111 14-124 1497-1637(1758)
45 KOG0161 Myosin class II heavy 93.7 1.3 2.8E-05 51.6 14.3 91 38-128 1317-1418(1930)
46 PF15619 Lebercilin: Ciliary p 93.5 0.67 1.5E-05 41.6 9.6 61 46-106 121-188 (194)
47 PF08317 Spc7: Spc7 kinetochor 93.4 1.7 3.6E-05 41.2 12.6 13 45-57 186-198 (325)
48 COG4942 Membrane-bound metallo 93.3 0.92 2E-05 45.5 11.0 67 43-109 38-107 (420)
49 PF07106 TBPIP: Tat binding pr 93.2 1.1 2.4E-05 38.2 10.0 61 47-109 76-136 (169)
50 PF10186 Atg14: UV radiation r 93.1 4.5 9.8E-05 36.1 14.2 41 40-80 67-107 (302)
51 PF15070 GOLGA2L5: Putative go 93.1 2.7 5.8E-05 43.8 14.4 79 37-115 23-113 (617)
52 KOG0804 Cytoplasmic Zn-finger 93.1 1.8 4E-05 44.0 12.7 97 27-127 327-441 (493)
53 PF07888 CALCOCO1: Calcium bin 93.1 2.4 5.1E-05 43.9 13.8 63 16-78 129-199 (546)
54 PF12325 TMF_TATA_bd: TATA ele 92.9 2.3 4.9E-05 35.8 11.2 20 105-124 98-117 (120)
55 PF00038 Filament: Intermediat 92.9 4.1 9E-05 37.3 14.0 72 51-122 217-295 (312)
56 PRK03918 chromosome segregatio 92.9 1.9 4E-05 44.8 13.0 6 68-73 644-649 (880)
57 smart00787 Spc7 Spc7 kinetocho 92.9 1.8 3.9E-05 41.4 12.0 30 52-81 206-235 (312)
58 TIGR03017 EpsF chain length de 92.9 1.3 2.7E-05 42.5 11.0 42 40-81 258-299 (444)
59 PF04899 MbeD_MobD: MbeD/MobD 92.9 1.9 4E-05 33.4 9.8 35 82-116 35-69 (70)
60 PF05266 DUF724: Protein of un 92.8 2.5 5.5E-05 37.9 12.1 66 47-116 107-179 (190)
61 PF04012 PspA_IM30: PspA/IM30 92.7 6.6 0.00014 34.6 15.0 101 24-127 22-129 (221)
62 PF10146 zf-C4H2: Zinc finger- 92.7 1.7 3.7E-05 40.1 11.1 41 92-132 70-111 (230)
63 PF08317 Spc7: Spc7 kinetochor 92.7 3 6.4E-05 39.5 13.0 89 41-129 154-263 (325)
64 KOG0994 Extracellular matrix g 92.6 0.65 1.4E-05 51.9 9.5 79 38-116 1196-1294(1758)
65 PF12325 TMF_TATA_bd: TATA ele 92.6 5.2 0.00011 33.6 13.0 74 52-129 18-94 (120)
66 KOG3433 Protein involved in me 92.6 0.99 2.2E-05 41.2 9.2 80 39-129 77-156 (203)
67 PF13851 GAS: Growth-arrest sp 92.6 2.6 5.6E-05 37.8 11.9 86 39-124 58-149 (201)
68 PF05911 DUF869: Plant protein 92.5 1.7 3.6E-05 46.6 12.2 91 35-126 10-115 (769)
69 PF03962 Mnd1: Mnd1 family; I 92.5 2.2 4.8E-05 37.9 11.3 30 47-76 66-95 (188)
70 PRK02224 chromosome segregatio 92.5 2.6 5.6E-05 44.1 13.5 14 24-37 146-159 (880)
71 TIGR03752 conj_TIGR03752 integ 92.5 1.2 2.6E-05 45.2 10.7 71 40-110 63-137 (472)
72 KOG0249 LAR-interacting protei 92.3 2.4 5.1E-05 45.6 12.8 73 52-124 165-251 (916)
73 PF09744 Jnk-SapK_ap_N: JNK_SA 92.3 3.7 8E-05 36.0 12.2 93 28-121 36-128 (158)
74 PF04156 IncA: IncA protein; 92.2 5 0.00011 34.4 12.8 38 43-80 102-139 (191)
75 KOG0995 Centromere-associated 92.2 2 4.3E-05 44.7 11.9 41 40-80 284-324 (581)
76 PF07888 CALCOCO1: Calcium bin 92.1 2.6 5.6E-05 43.6 12.6 39 43-81 143-181 (546)
77 smart00787 Spc7 Spc7 kinetocho 92.1 3.2 7E-05 39.7 12.5 77 41-128 177-257 (312)
78 PF06810 Phage_GP20: Phage min 92.0 1.8 3.8E-05 37.5 9.7 33 40-72 17-49 (155)
79 TIGR03185 DNA_S_dndD DNA sulfu 91.8 4.8 0.0001 41.4 14.2 68 14-81 171-247 (650)
80 TIGR01843 type_I_hlyD type I s 91.7 6.9 0.00015 36.5 14.1 43 38-80 139-181 (423)
81 KOG4010 Coiled-coil protein TP 91.7 0.31 6.7E-06 44.5 5.0 35 40-74 48-82 (208)
82 PF09726 Macoilin: Transmembra 91.7 0.94 2E-05 47.7 9.1 56 47-102 422-480 (697)
83 PF02050 FliJ: Flagellar FliJ 91.6 4.7 0.0001 30.5 13.1 84 38-125 14-102 (123)
84 PF10224 DUF2205: Predicted co 91.5 0.98 2.1E-05 35.8 7.0 40 72-111 24-66 (80)
85 TIGR03007 pepcterm_ChnLen poly 91.5 2.1 4.5E-05 41.8 10.8 41 40-80 251-291 (498)
86 PF06005 DUF904: Protein of un 91.4 3.6 7.8E-05 31.8 9.9 57 48-108 9-65 (72)
87 PF10146 zf-C4H2: Zinc finger- 91.3 8.2 0.00018 35.7 13.9 20 61-80 47-69 (230)
88 KOG0161 Myosin class II heavy 91.3 2.6 5.6E-05 49.2 12.7 89 28-116 1696-1792(1930)
89 PF11932 DUF3450: Protein of u 91.2 8.4 0.00018 34.9 13.7 40 42-81 41-80 (251)
90 TIGR02231 conserved hypothetic 91.2 2.4 5.2E-05 42.3 11.0 78 40-117 68-166 (525)
91 PF13870 DUF4201: Domain of un 91.2 5.6 0.00012 34.2 12.0 80 46-125 45-127 (177)
92 TIGR01005 eps_transp_fam exopo 91.2 1.8 3.9E-05 44.8 10.5 30 102-131 375-404 (754)
93 PF11932 DUF3450: Protein of u 91.1 8.8 0.00019 34.8 13.8 53 28-81 21-73 (251)
94 PF10168 Nup88: Nuclear pore c 91.1 2.4 5.2E-05 44.8 11.5 65 38-106 560-624 (717)
95 PF13863 DUF4200: Domain of un 91.1 6.9 0.00015 31.4 13.5 35 88-122 80-114 (126)
96 PRK10361 DNA recombination pro 91.1 8.5 0.00018 39.3 14.8 74 53-126 70-160 (475)
97 PF15290 Syntaphilin: Golgi-lo 91.0 3.4 7.3E-05 39.9 11.2 90 26-120 62-166 (305)
98 PF00769 ERM: Ezrin/radixin/mo 90.9 3.9 8.4E-05 37.7 11.4 78 40-117 9-96 (246)
99 PF12777 MT: Microtubule-bindi 90.8 1.4 3E-05 41.9 8.7 57 43-103 221-277 (344)
100 KOG0995 Centromere-associated 90.8 4.4 9.5E-05 42.2 12.7 93 39-131 255-367 (581)
101 KOG0963 Transcription factor/C 90.8 2.7 5.8E-05 44.1 11.2 98 29-126 227-340 (629)
102 KOG0250 DNA repair protein RAD 90.8 2.8 6E-05 46.4 11.7 35 92-126 390-424 (1074)
103 COG1196 Smc Chromosome segrega 90.7 5.5 0.00012 43.8 14.1 40 85-124 442-481 (1163)
104 PF10205 KLRAQ: Predicted coil 90.6 4.9 0.00011 33.3 10.5 61 48-113 3-64 (102)
105 PF14662 CCDC155: Coiled-coil 90.4 3.8 8.2E-05 37.4 10.6 64 46-109 63-129 (193)
106 KOG4398 Predicted coiled-coil 90.4 1.8 3.9E-05 42.0 8.9 84 40-127 2-89 (359)
107 PF05911 DUF869: Plant protein 90.4 2.9 6.3E-05 44.8 11.4 60 42-101 98-160 (769)
108 PF09730 BicD: Microtubule-ass 90.4 3.9 8.5E-05 43.5 12.2 91 40-131 31-138 (717)
109 COG4026 Uncharacterized protei 90.3 2.2 4.8E-05 40.3 9.3 76 40-119 139-214 (290)
110 TIGR00606 rad50 rad50. This fa 90.3 3.2 7E-05 46.1 12.0 76 40-115 1002-1087(1311)
111 COG1196 Smc Chromosome segrega 90.2 4.5 9.7E-05 44.5 13.0 24 92-115 887-910 (1163)
112 PF09798 LCD1: DNA damage chec 90.2 1.4 3E-05 46.4 8.6 56 55-110 2-61 (654)
113 TIGR01843 type_I_hlyD type I s 90.1 16 0.00035 34.0 15.3 42 40-81 134-175 (423)
114 PF10205 KLRAQ: Predicted coil 90.0 4.9 0.00011 33.4 10.1 74 41-118 3-76 (102)
115 KOG1962 B-cell receptor-associ 90.0 1.7 3.7E-05 40.2 8.1 71 41-115 119-198 (216)
116 PF11544 Spc42p: Spindle pole 89.9 4.5 9.7E-05 32.1 9.3 52 48-103 3-54 (76)
117 PF14197 Cep57_CLD_2: Centroso 89.9 2.7 5.9E-05 32.1 8.0 55 63-121 4-62 (69)
118 COG4942 Membrane-bound metallo 89.8 5.3 0.00011 40.2 12.0 61 51-115 39-99 (420)
119 KOG1103 Predicted coiled-coil 89.6 11 0.00023 38.1 13.8 76 42-120 219-300 (561)
120 PRK12704 phosphodiesterase; Pr 89.6 11 0.00023 38.6 14.2 13 117-129 154-166 (520)
121 KOG0980 Actin-binding protein 89.5 8.2 0.00018 42.3 13.7 42 84-125 454-506 (980)
122 PRK02119 hypothetical protein; 89.4 2.4 5.2E-05 32.6 7.4 15 66-80 4-18 (73)
123 COG5185 HEC1 Protein involved 89.4 4.4 9.6E-05 41.9 11.3 63 50-112 330-398 (622)
124 PF04201 TPD52: Tumour protein 89.3 6.1 0.00013 35.2 10.8 34 40-73 33-66 (162)
125 TIGR03319 YmdA_YtgF conserved 89.3 12 0.00025 38.2 14.2 12 118-129 149-160 (514)
126 TIGR00606 rad50 rad50. This fa 89.1 7.6 0.00016 43.2 13.8 43 39-81 884-926 (1311)
127 PF14362 DUF4407: Domain of un 89.1 18 0.0004 33.4 14.5 83 48-130 133-238 (301)
128 PF10779 XhlA: Haemolysin XhlA 89.1 2.1 4.6E-05 32.3 6.8 48 67-118 2-49 (71)
129 PF15070 GOLGA2L5: Putative go 89.1 4.8 0.00011 42.0 11.6 75 40-118 47-137 (617)
130 KOG4674 Uncharacterized conser 89.1 3 6.4E-05 48.4 10.8 47 46-92 1310-1356(1822)
131 PF10805 DUF2730: Protein of u 89.1 2 4.4E-05 34.9 7.1 59 51-113 36-96 (106)
132 TIGR03017 EpsF chain length de 89.0 7.5 0.00016 37.3 12.1 86 44-130 283-369 (444)
133 PF10174 Cast: RIM-binding pro 88.9 6.8 0.00015 42.1 12.7 71 40-110 333-413 (775)
134 PF15035 Rootletin: Ciliary ro 88.9 3.4 7.3E-05 36.8 9.0 21 95-115 94-114 (182)
135 TIGR03007 pepcterm_ChnLen poly 88.8 6 0.00013 38.7 11.5 87 43-129 275-381 (498)
136 PRK09039 hypothetical protein; 88.7 15 0.00033 35.4 14.0 6 188-193 265-270 (343)
137 PF05377 FlaC_arch: Flagella a 88.7 2 4.3E-05 32.1 6.2 38 66-107 2-39 (55)
138 KOG4673 Transcription factor T 88.6 3.6 7.8E-05 44.2 10.3 42 55-96 444-491 (961)
139 PF11068 YlqD: YlqD protein; 88.5 4.8 0.0001 34.3 9.3 63 62-128 18-85 (131)
140 PF05667 DUF812: Protein of un 88.5 5.1 0.00011 41.7 11.2 41 41-81 340-380 (594)
141 PF15619 Lebercilin: Ciliary p 88.4 7.2 0.00016 35.0 10.9 79 38-116 56-145 (194)
142 TIGR01005 eps_transp_fam exopo 88.4 4.9 0.00011 41.6 11.1 37 44-80 296-332 (754)
143 PF04111 APG6: Autophagy prote 88.4 11 0.00024 35.9 12.7 40 42-81 42-81 (314)
144 KOG2129 Uncharacterized conser 88.4 14 0.00031 37.8 13.8 85 37-124 202-317 (552)
145 PRK04406 hypothetical protein; 88.3 3.6 7.8E-05 31.9 7.8 16 66-81 6-21 (75)
146 PF04102 SlyX: SlyX; InterPro 88.2 3.4 7.4E-05 31.2 7.4 25 104-128 26-50 (69)
147 PF05529 Bap31: B-cell recepto 88.1 2 4.3E-05 37.4 7.0 68 40-111 122-190 (192)
148 PF10805 DUF2730: Protein of u 88.1 4.9 0.00011 32.6 8.8 28 88-115 64-91 (106)
149 COG2433 Uncharacterized conser 88.1 8.7 0.00019 40.6 12.5 85 41-126 420-508 (652)
150 PF14817 HAUS5: HAUS augmin-li 88.1 8.7 0.00019 40.4 12.7 77 44-120 80-166 (632)
151 PF10168 Nup88: Nuclear pore c 88.1 4.5 9.7E-05 42.9 10.7 51 53-103 546-600 (717)
152 PF08826 DMPK_coil: DMPK coile 88.0 8.2 0.00018 29.2 9.3 56 46-109 4-59 (61)
153 KOG0288 WD40 repeat protein Ti 88.0 9.1 0.0002 38.9 12.2 36 46-81 37-72 (459)
154 PF11594 Med28: Mediator compl 87.9 4.1 8.8E-05 34.1 8.2 52 30-81 14-73 (106)
155 COG3883 Uncharacterized protei 87.9 4.6 0.0001 38.4 9.6 28 88-115 65-92 (265)
156 KOG2991 Splicing regulator [RN 87.9 3.2 6.8E-05 40.0 8.6 71 36-106 229-309 (330)
157 PRK02793 phi X174 lysis protei 87.7 3.7 8E-05 31.5 7.4 10 69-78 6-15 (72)
158 KOG4673 Transcription factor T 87.7 5.1 0.00011 43.1 10.7 37 44-80 496-532 (961)
159 PF10174 Cast: RIM-binding pro 87.7 6.8 0.00015 42.1 11.8 64 33-103 277-350 (775)
160 PRK13729 conjugal transfer pil 87.6 2.3 5.1E-05 43.3 8.0 21 59-79 71-91 (475)
161 PF10473 CENP-F_leu_zip: Leuci 87.6 10 0.00022 32.8 10.9 70 42-114 65-137 (140)
162 PF09755 DUF2046: Uncharacteri 87.5 20 0.00044 34.9 13.9 86 37-125 179-294 (310)
163 TIGR00634 recN DNA repair prot 87.5 4 8.6E-05 41.3 9.6 47 83-129 340-391 (563)
164 PF02601 Exonuc_VII_L: Exonucl 87.4 17 0.00037 33.7 13.1 54 28-81 150-208 (319)
165 PRK04863 mukB cell division pr 87.4 15 0.00032 42.2 14.8 28 91-118 399-426 (1486)
166 PF00170 bZIP_1: bZIP transcri 87.4 3.6 7.9E-05 30.0 7.0 20 61-80 23-42 (64)
167 PF06156 DUF972: Protein of un 87.3 5 0.00011 33.1 8.5 41 66-110 17-57 (107)
168 PF10211 Ax_dynein_light: Axon 87.3 5.4 0.00012 35.4 9.3 24 94-117 161-184 (189)
169 PF05384 DegS: Sensor protein 87.2 15 0.00033 32.3 11.9 79 40-119 45-128 (159)
170 KOG0244 Kinesin-like protein [ 87.2 3.3 7.1E-05 45.2 9.2 96 36-132 509-608 (913)
171 PF06005 DUF904: Protein of un 87.1 11 0.00025 29.0 9.8 28 88-115 24-51 (72)
172 PF10158 LOH1CR12: Tumour supp 87.0 8.5 0.00018 32.8 9.9 81 17-102 19-110 (131)
173 TIGR01000 bacteriocin_acc bact 87.0 8.5 0.00018 37.7 11.3 26 44-69 237-262 (457)
174 PF13747 DUF4164: Domain of un 86.9 7.7 0.00017 30.9 9.1 25 82-106 53-77 (89)
175 PRK00106 hypothetical protein; 86.9 20 0.00043 37.1 14.2 14 117-130 169-182 (535)
176 PF13874 Nup54: Nucleoporin co 86.9 5 0.00011 33.9 8.5 33 38-70 32-64 (141)
177 PF03962 Mnd1: Mnd1 family; I 86.6 5 0.00011 35.7 8.7 30 40-69 66-95 (188)
178 KOG0962 DNA repair protein RAD 86.6 7.2 0.00016 44.1 11.6 81 38-124 1010-1096(1294)
179 TIGR00634 recN DNA repair prot 86.6 2.3 4.9E-05 43.0 7.3 57 25-81 142-199 (563)
180 COG3883 Uncharacterized protei 86.5 8 0.00017 36.8 10.4 22 86-107 77-98 (265)
181 KOG4643 Uncharacterized coiled 86.5 5.2 0.00011 44.4 10.3 68 38-109 172-239 (1195)
182 KOG4687 Uncharacterized coiled 86.3 3.3 7.1E-05 40.3 7.8 31 97-127 84-114 (389)
183 KOG4005 Transcription factor X 86.1 9.7 0.00021 36.4 10.7 81 42-126 58-145 (292)
184 PF04100 Vps53_N: Vps53-like, 86.1 8.5 0.00018 37.6 10.7 43 10-56 2-45 (383)
185 PF09486 HrpB7: Bacterial type 86.0 11 0.00023 33.3 10.3 46 36-81 79-124 (158)
186 PF06818 Fez1: Fez1; InterPro 86.0 6.9 0.00015 35.9 9.4 67 50-116 31-100 (202)
187 PF12329 TMF_DNA_bd: TATA elem 85.9 5.5 0.00012 30.6 7.5 35 84-118 14-48 (74)
188 PRK10803 tol-pal system protei 85.9 6.5 0.00014 36.4 9.4 63 49-115 39-101 (263)
189 KOG1962 B-cell receptor-associ 85.8 7.1 0.00015 36.2 9.4 56 46-105 154-209 (216)
190 TIGR02559 HrpB7 type III secre 85.7 13 0.00029 33.0 10.7 63 38-100 81-149 (158)
191 PF07926 TPR_MLP1_2: TPR/MLP1/ 85.7 13 0.00029 30.8 10.3 30 52-81 61-90 (132)
192 PF08647 BRE1: BRE1 E3 ubiquit 85.6 13 0.00028 29.6 9.8 49 46-95 27-75 (96)
193 PF04849 HAP1_N: HAP1 N-termin 85.6 18 0.00039 35.1 12.4 86 30-115 154-253 (306)
194 TIGR01000 bacteriocin_acc bact 85.5 20 0.00044 35.1 13.1 39 40-78 162-200 (457)
195 PF06120 Phage_HK97_TLTM: Tail 85.5 20 0.00044 34.6 12.7 75 48-122 72-164 (301)
196 PRK12705 hypothetical protein; 85.5 13 0.00027 38.3 12.0 14 118-131 143-156 (508)
197 PRK00295 hypothetical protein; 85.3 7.4 0.00016 29.5 7.9 40 66-109 7-46 (68)
198 TIGR00293 prefoldin, archaeal 85.2 18 0.0004 29.2 11.1 42 86-127 83-124 (126)
199 PF12240 Angiomotin_C: Angiomo 85.1 30 0.00064 32.0 13.0 80 52-131 59-171 (205)
200 TIGR02680 conserved hypothetic 85.1 12 0.00027 42.1 12.7 42 40-81 739-780 (1353)
201 PF08700 Vps51: Vps51/Vps67; 85.0 14 0.00031 27.7 9.9 61 51-115 23-84 (87)
202 TIGR01010 BexC_CtrB_KpsE polys 84.9 6.9 0.00015 37.0 9.3 80 43-129 214-304 (362)
203 PF02994 Transposase_22: L1 tr 84.8 2.1 4.6E-05 41.5 6.0 68 41-108 103-170 (370)
204 KOG3119 Basic region leucine z 84.8 2.6 5.6E-05 39.4 6.3 86 43-128 172-261 (269)
205 PF05622 HOOK: HOOK protein; 84.8 0.29 6.2E-06 50.8 0.0 41 83-123 333-373 (713)
206 KOG0996 Structural maintenance 84.7 10 0.00022 42.8 11.4 81 21-101 772-877 (1293)
207 PF09304 Cortex-I_coil: Cortex 84.6 23 0.00049 29.8 11.3 41 38-78 11-51 (107)
208 PF05781 MRVI1: MRVI1 protein; 84.5 23 0.0005 36.8 13.3 98 26-125 196-325 (538)
209 PF10234 Cluap1: Clusterin-ass 84.5 16 0.00034 34.8 11.3 67 49-115 143-209 (267)
210 PF05529 Bap31: B-cell recepto 84.4 10 0.00022 32.9 9.5 69 41-122 116-184 (192)
211 KOG0999 Microtubule-associated 84.3 9.9 0.00021 40.2 10.6 37 40-76 104-140 (772)
212 PF09728 Taxilin: Myosin-like 84.2 40 0.00087 32.2 14.7 79 44-122 203-305 (309)
213 PRK04778 septation ring format 84.2 14 0.00031 37.6 11.7 49 82-130 317-375 (569)
214 PF05278 PEARLI-4: Arabidopsis 84.1 17 0.00037 34.7 11.4 66 50-115 193-261 (269)
215 PRK01156 chromosome segregatio 84.1 19 0.00041 38.1 12.9 14 91-104 697-710 (895)
216 KOG4643 Uncharacterized coiled 84.1 11 0.00025 41.9 11.4 77 45-121 504-593 (1195)
217 PRK01156 chromosome segregatio 84.0 15 0.00033 38.8 12.2 18 106-123 729-746 (895)
218 PRK04863 mukB cell division pr 84.0 29 0.00063 40.0 15.0 76 39-114 317-401 (1486)
219 PF09787 Golgin_A5: Golgin sub 83.9 4.5 9.8E-05 40.7 8.0 71 38-112 357-429 (511)
220 PRK00888 ftsB cell division pr 83.8 5.5 0.00012 32.5 7.1 44 86-129 38-81 (105)
221 PRK00286 xseA exodeoxyribonucl 83.8 27 0.00058 34.1 13.0 53 28-80 267-321 (438)
222 KOG0250 DNA repair protein RAD 83.8 14 0.00031 41.1 12.1 69 40-108 348-420 (1074)
223 PRK10803 tol-pal system protei 83.8 5.3 0.00011 37.0 7.8 61 40-100 37-100 (263)
224 PF04977 DivIC: Septum formati 83.7 6.5 0.00014 28.8 6.9 35 86-120 28-62 (80)
225 PF09789 DUF2353: Uncharacteri 83.7 6.7 0.00015 38.1 8.7 73 41-113 77-150 (319)
226 PF14932 HAUS-augmin3: HAUS au 83.7 21 0.00045 32.9 11.6 38 43-80 68-105 (256)
227 PF04102 SlyX: SlyX; InterPro 83.6 8.6 0.00019 29.0 7.6 47 65-115 5-51 (69)
228 PF00038 Filament: Intermediat 83.6 36 0.00077 31.2 14.6 84 32-115 184-274 (312)
229 PF15035 Rootletin: Ciliary ro 83.5 13 0.00029 33.1 9.9 34 82-115 67-107 (182)
230 KOG1899 LAR transmembrane tyro 83.5 39 0.00084 36.4 14.5 79 40-118 228-313 (861)
231 PRK13169 DNA replication intia 83.4 9.4 0.0002 31.8 8.3 38 67-108 18-55 (110)
232 PRK12704 phosphodiesterase; Pr 83.2 39 0.00084 34.6 14.3 36 92-127 110-145 (520)
233 KOG0971 Microtubule-associated 83.1 5.6 0.00012 43.9 8.6 31 44-74 411-441 (1243)
234 KOG0933 Structural maintenance 83.0 9.7 0.00021 42.4 10.4 39 84-122 887-925 (1174)
235 PF07106 TBPIP: Tat binding pr 83.0 7.8 0.00017 33.1 8.0 65 17-81 64-133 (169)
236 KOG4552 Vitamin-D-receptor int 83.0 9.7 0.00021 35.9 9.1 37 45-81 69-105 (272)
237 PRK00736 hypothetical protein; 82.9 9.6 0.00021 28.9 7.6 41 65-109 6-46 (68)
238 TIGR00237 xseA exodeoxyribonuc 82.7 31 0.00066 34.2 13.1 52 29-80 263-316 (432)
239 PF05266 DUF724: Protein of un 82.6 22 0.00047 32.0 11.0 24 14-37 55-78 (190)
240 smart00338 BRLZ basic region l 82.6 11 0.00025 27.4 7.7 28 89-116 33-60 (65)
241 PF02841 GBP_C: Guanylate-bind 82.4 17 0.00037 33.9 10.6 72 47-121 187-258 (297)
242 PRK04778 septation ring format 82.4 17 0.00036 37.1 11.4 11 115-125 427-437 (569)
243 PF04136 Sec34: Sec34-like fam 82.2 32 0.0007 29.7 12.0 81 42-127 6-86 (157)
244 PRK04325 hypothetical protein; 82.2 7.4 0.00016 30.0 6.9 12 66-77 11-22 (74)
245 PF04012 PspA_IM30: PspA/IM30 82.2 28 0.00061 30.6 11.4 105 15-124 24-140 (221)
246 PF14282 FlxA: FlxA-like prote 82.1 8.2 0.00018 31.3 7.4 59 63-122 18-77 (106)
247 TIGR03319 YmdA_YtgF conserved 82.0 44 0.00096 34.1 14.2 35 92-126 104-138 (514)
248 PF09304 Cortex-I_coil: Cortex 81.9 11 0.00023 31.7 8.1 14 68-81 13-26 (107)
249 COG1842 PspA Phage shock prote 81.9 43 0.00093 30.9 14.2 14 24-37 23-36 (225)
250 PF06246 Isy1: Isy1-like splic 81.9 6.1 0.00013 37.1 7.5 58 52-109 39-98 (255)
251 PF04977 DivIC: Septum formati 81.8 7.6 0.00016 28.4 6.6 29 46-74 20-48 (80)
252 PRK00846 hypothetical protein; 81.7 9.7 0.00021 30.0 7.4 10 69-78 11-20 (77)
253 PRK10869 recombination and rep 81.7 12 0.00025 38.3 10.0 55 24-78 137-192 (553)
254 PF13747 DUF4164: Domain of un 81.7 25 0.00053 28.0 10.3 39 87-125 37-75 (89)
255 PF01576 Myosin_tail_1: Myosin 81.6 0.45 9.8E-06 50.8 0.0 91 38-128 259-360 (859)
256 TIGR02231 conserved hypothetic 81.5 22 0.00047 35.6 11.6 37 82-118 138-174 (525)
257 PF02388 FemAB: FemAB family; 81.3 10 0.00022 37.0 9.1 54 65-119 243-296 (406)
258 KOG0249 LAR-interacting protei 81.2 22 0.00047 38.7 11.9 24 102-125 212-235 (916)
259 KOG0980 Actin-binding protein 81.1 18 0.00038 39.9 11.4 51 61-111 463-516 (980)
260 smart00502 BBC B-Box C-termina 81.0 23 0.0005 27.2 13.2 17 101-117 77-93 (127)
261 smart00338 BRLZ basic region l 80.8 8.2 0.00018 28.2 6.4 39 61-103 23-61 (65)
262 PF13863 DUF4200: Domain of un 80.5 28 0.00061 27.9 15.0 61 67-127 42-105 (126)
263 PF10046 BLOC1_2: Biogenesis o 80.3 28 0.00061 27.8 10.1 32 39-70 31-62 (99)
264 COG1570 XseA Exonuclease VII, 80.2 39 0.00085 34.4 12.9 72 10-81 236-323 (440)
265 PF06657 Cep57_MT_bd: Centroso 80.2 11 0.00024 29.4 7.2 65 38-109 12-77 (79)
266 PF08898 DUF1843: Domain of un 80.2 6 0.00013 29.5 5.4 36 82-117 17-52 (53)
267 PF11740 KfrA_N: Plasmid repli 80.2 16 0.00034 29.0 8.4 63 11-80 56-118 (120)
268 PRK00409 recombination and DNA 80.2 37 0.00079 36.4 13.4 50 31-81 505-554 (782)
269 PF06103 DUF948: Bacterial pro 80.1 25 0.00053 27.0 12.6 64 52-115 21-87 (90)
270 TIGR02680 conserved hypothetic 80.1 38 0.00082 38.4 14.0 67 43-109 882-955 (1353)
271 PF05010 TACC: Transforming ac 80.1 48 0.001 30.4 12.7 65 49-113 22-93 (207)
272 TIGR03495 phage_LysB phage lys 80.1 23 0.0005 30.5 9.8 30 51-80 20-49 (135)
273 KOG0964 Structural maintenance 80.0 13 0.00029 41.3 10.1 70 42-115 410-479 (1200)
274 PRK15422 septal ring assembly 80.0 29 0.00063 27.8 9.8 23 86-108 50-72 (79)
275 PF12072 DUF3552: Domain of un 79.6 44 0.00096 29.7 14.6 21 61-81 75-95 (201)
276 PF04899 MbeD_MobD: MbeD/MobD 79.6 25 0.00053 27.3 8.9 54 28-81 6-59 (70)
277 cd07666 BAR_SNX7 The Bin/Amphi 79.6 54 0.0012 30.6 13.6 93 25-121 110-213 (243)
278 PF03961 DUF342: Protein of un 79.4 20 0.00044 35.3 10.5 28 89-116 375-402 (451)
279 PF02403 Seryl_tRNA_N: Seryl-t 79.4 24 0.00051 27.8 9.1 76 50-126 29-104 (108)
280 PRK02793 phi X174 lysis protei 79.3 11 0.00023 29.0 6.8 47 63-113 7-53 (72)
281 KOG0612 Rho-associated, coiled 79.1 20 0.00043 40.7 11.2 49 83-131 617-665 (1317)
282 PF14389 Lzipper-MIP1: Leucine 79.0 11 0.00023 29.9 6.9 68 41-115 6-80 (88)
283 TIGR01554 major_cap_HK97 phage 78.9 12 0.00026 35.6 8.6 8 115-122 86-93 (378)
284 PF00170 bZIP_1: bZIP transcri 78.9 22 0.00048 25.8 8.9 35 82-116 26-60 (64)
285 COG4372 Uncharacterized protei 78.8 22 0.00048 36.2 10.5 70 45-118 212-281 (499)
286 COG2919 Septum formation initi 78.8 35 0.00077 28.1 11.0 43 86-128 61-103 (117)
287 TIGR02132 phaR_Bmeg polyhydrox 78.7 15 0.00033 33.5 8.6 56 40-95 76-144 (189)
288 PF12240 Angiomotin_C: Angiomo 78.6 2.9 6.4E-05 38.4 4.2 32 41-72 134-165 (205)
289 PRK10361 DNA recombination pro 78.6 53 0.0012 33.7 13.4 13 102-114 146-158 (475)
290 PF06698 DUF1192: Protein of u 78.5 3.3 7.1E-05 31.2 3.7 28 40-67 25-52 (59)
291 KOG1853 LIS1-interacting prote 78.5 37 0.0008 32.9 11.5 57 43-99 91-157 (333)
292 PF06785 UPF0242: Uncharacteri 78.5 76 0.0016 31.8 13.9 65 54-118 89-177 (401)
293 PF13864 Enkurin: Calmodulin-b 78.4 5 0.00011 31.8 5.0 56 60-117 40-95 (98)
294 KOG0978 E3 ubiquitin ligase in 78.4 51 0.0011 35.4 13.6 113 13-125 377-518 (698)
295 KOG1853 LIS1-interacting prote 78.4 50 0.0011 32.1 12.3 37 89-125 98-134 (333)
296 KOG4074 Leucine zipper nuclear 78.2 22 0.00048 35.1 10.1 73 42-114 136-209 (383)
297 PF07200 Mod_r: Modifier of ru 78.2 38 0.00083 28.1 13.2 44 38-81 43-86 (150)
298 TIGR00020 prfB peptide chain r 78.0 32 0.0007 34.0 11.4 85 32-116 12-112 (364)
299 PF10481 CENP-F_N: Cenp-F N-te 78.0 13 0.00027 36.1 8.3 63 43-112 18-90 (307)
300 PF05700 BCAS2: Breast carcino 77.9 53 0.0012 29.6 12.4 14 46-59 146-159 (221)
301 PF05622 HOOK: HOOK protein; 77.9 0.71 1.5E-05 47.9 0.0 90 41-131 237-342 (713)
302 TIGR00618 sbcc exonuclease Sbc 77.9 54 0.0012 35.8 14.0 26 97-122 261-286 (1042)
303 TIGR03752 conj_TIGR03752 integ 77.8 30 0.00066 35.5 11.4 78 45-126 61-139 (472)
304 KOG0977 Nuclear envelope prote 77.8 21 0.00045 37.2 10.4 59 58-116 149-217 (546)
305 PRK00591 prfA peptide chain re 77.7 34 0.00073 33.8 11.4 89 41-129 4-109 (359)
306 PF05377 FlaC_arch: Flagella a 77.6 8.3 0.00018 28.8 5.6 35 45-79 2-36 (55)
307 PLN03188 kinesin-12 family pro 77.5 32 0.00069 39.3 12.2 55 67-125 1200-1255(1320)
308 KOG4687 Uncharacterized coiled 77.3 36 0.00078 33.4 11.2 81 40-123 20-128 (389)
309 COG3074 Uncharacterized protei 77.3 35 0.00075 27.2 9.5 44 65-108 26-72 (79)
310 PF11488 Lge1: Transcriptional 77.2 22 0.00049 27.5 8.2 30 52-81 25-54 (80)
311 COG3206 GumC Uncharacterized p 77.2 31 0.00068 33.8 11.1 30 103-132 373-402 (458)
312 PF06476 DUF1090: Protein of u 77.0 16 0.00035 30.4 7.8 40 42-81 42-87 (115)
313 PF05008 V-SNARE: Vesicle tran 76.8 25 0.00055 26.1 8.2 52 61-116 22-74 (79)
314 PRK00106 hypothetical protein; 76.8 79 0.0017 32.8 14.2 41 87-127 120-160 (535)
315 COG3334 Uncharacterized conser 76.8 36 0.00077 31.1 10.5 84 20-109 44-132 (192)
316 PRK04406 hypothetical protein; 76.8 20 0.00044 27.8 7.8 43 64-110 11-53 (75)
317 PF13514 AAA_27: AAA domain 76.8 27 0.00058 38.3 11.4 77 44-121 131-213 (1111)
318 COG5493 Uncharacterized conser 76.8 60 0.0013 30.4 12.0 19 13-31 2-20 (231)
319 PF14257 DUF4349: Domain of un 76.7 17 0.00037 33.0 8.5 17 44-60 140-156 (262)
320 PF05278 PEARLI-4: Arabidopsis 76.7 43 0.00093 32.1 11.4 63 43-109 200-262 (269)
321 PF10234 Cluap1: Clusterin-ass 76.6 33 0.00071 32.7 10.6 21 40-60 166-186 (267)
322 PF12128 DUF3584: Protein of u 76.5 42 0.00091 37.4 12.9 37 44-80 622-658 (1201)
323 PRK00578 prfB peptide chain re 76.1 51 0.0011 32.6 12.2 90 32-123 12-117 (367)
324 PF13805 Pil1: Eisosome compon 76.1 41 0.0009 32.2 11.1 41 41-81 101-141 (271)
325 PF11855 DUF3375: Protein of u 76.0 22 0.00047 35.8 9.8 94 38-132 117-218 (478)
326 PF12777 MT: Microtubule-bindi 75.9 22 0.00047 34.0 9.4 77 45-129 216-292 (344)
327 PRK11448 hsdR type I restricti 75.8 23 0.00049 39.6 10.6 67 48-118 147-213 (1123)
328 PF12761 End3: Actin cytoskele 75.8 40 0.00086 30.9 10.5 27 49-75 95-121 (195)
329 TIGR00019 prfA peptide chain r 75.7 51 0.0011 32.6 12.0 27 99-125 78-105 (360)
330 PRK04325 hypothetical protein; 75.6 20 0.00044 27.6 7.5 15 67-81 5-19 (74)
331 PF04576 Zein-binding: Zein-bi 75.6 44 0.00095 27.5 10.3 41 84-124 33-81 (94)
332 COG1322 Predicted nuclease of 75.5 91 0.002 31.7 14.0 14 115-128 141-154 (448)
333 KOG2391 Vacuolar sorting prote 75.5 31 0.00068 34.3 10.4 85 19-121 194-278 (365)
334 KOG0996 Structural maintenance 75.5 22 0.00049 40.2 10.4 32 45-76 780-811 (1293)
335 TIGR01069 mutS2 MutS2 family p 75.5 64 0.0014 34.6 13.5 39 30-69 499-537 (771)
336 KOG2662 Magnesium transporters 75.5 27 0.00059 35.3 10.2 74 26-103 175-255 (414)
337 TIGR03545 conserved hypothetic 75.3 28 0.00062 36.0 10.6 64 63-126 190-267 (555)
338 KOG2417 Predicted G-protein co 75.3 9.5 0.0002 38.4 6.9 27 99-125 245-271 (462)
339 PF04582 Reo_sigmaC: Reovirus 75.2 6.9 0.00015 38.2 5.9 76 41-116 54-139 (326)
340 PF07794 DUF1633: Protein of u 75.1 30 0.00064 36.5 10.5 92 35-126 589-704 (790)
341 COG5374 Uncharacterized conser 74.9 6.7 0.00014 35.8 5.3 35 45-79 138-172 (192)
342 PF10475 DUF2450: Protein of u 74.9 72 0.0016 29.6 13.9 71 11-81 12-98 (291)
343 PF02183 HALZ: Homeobox associ 74.8 14 0.00031 26.1 6.0 27 86-112 16-42 (45)
344 PF07926 TPR_MLP1_2: TPR/MLP1/ 74.8 48 0.001 27.5 12.2 17 46-62 6-22 (132)
345 KOG0972 Huntingtin interacting 74.7 27 0.00059 34.4 9.7 59 41-99 264-325 (384)
346 KOG0946 ER-Golgi vesicle-tethe 74.6 28 0.00061 38.2 10.6 42 40-81 675-716 (970)
347 PF14193 DUF4315: Domain of un 74.6 29 0.00063 27.6 8.3 60 44-123 2-61 (83)
348 PRK11519 tyrosine kinase; Prov 74.5 38 0.00083 35.5 11.5 28 104-131 371-398 (719)
349 PF13094 CENP-Q: CENP-Q, a CEN 74.5 46 0.001 28.2 10.1 71 47-128 24-94 (160)
350 PRK06975 bifunctional uroporph 74.5 52 0.0011 34.4 12.4 68 43-110 346-413 (656)
351 PF11802 CENP-K: Centromere-as 74.2 35 0.00075 32.7 10.1 28 104-131 155-182 (268)
352 PF04582 Reo_sigmaC: Reovirus 74.2 3.2 6.9E-05 40.5 3.3 32 86-117 123-154 (326)
353 PF03938 OmpH: Outer membrane 74.1 31 0.00067 28.5 8.8 39 38-76 31-69 (158)
354 PF06818 Fez1: Fez1; InterPro 74.1 43 0.00093 30.8 10.3 38 28-65 22-67 (202)
355 KOG4603 TBP-1 interacting prot 74.0 27 0.00057 32.0 8.8 33 48-80 84-116 (201)
356 COG3524 KpsE Capsule polysacch 73.8 46 0.001 33.0 11.0 88 25-122 213-323 (372)
357 PRK10869 recombination and rep 73.8 43 0.00092 34.3 11.4 50 82-131 334-388 (553)
358 PF13935 Ead_Ea22: Ead/Ea22-li 73.7 37 0.0008 28.6 9.3 71 42-116 66-139 (139)
359 KOG0241 Kinesin-like protein [ 73.6 19 0.00042 40.5 9.2 51 31-81 346-403 (1714)
360 PF11285 DUF3086: Protein of u 73.6 8.6 0.00019 36.9 5.9 59 65-130 5-64 (283)
361 KOG0239 Kinesin (KAR3 subfamil 73.5 46 0.001 35.3 11.8 63 66-128 243-311 (670)
362 PF06156 DUF972: Protein of un 73.4 23 0.0005 29.2 7.8 47 71-117 8-57 (107)
363 PHA03332 membrane glycoprotein 73.3 54 0.0012 37.2 12.4 55 43-97 905-963 (1328)
364 KOG0933 Structural maintenance 73.3 39 0.00085 37.9 11.4 39 43-81 741-779 (1174)
365 PF07246 Phlebovirus_NSM: Phle 73.2 27 0.00059 33.4 9.1 26 56-81 160-185 (264)
366 KOG2629 Peroxisomal membrane a 73.2 29 0.00064 33.7 9.4 65 46-117 118-182 (300)
367 KOG0979 Structural maintenance 73.1 40 0.00087 37.7 11.4 76 40-119 626-701 (1072)
368 PF06637 PV-1: PV-1 protein (P 73.0 71 0.0015 32.5 12.3 67 45-113 306-380 (442)
369 PHA02557 22 prohead core prote 73.0 36 0.00077 32.7 9.9 73 53-125 144-222 (271)
370 PF03961 DUF342: Protein of un 73.0 17 0.00037 35.8 8.1 35 95-129 374-408 (451)
371 PF15272 BBP1_C: Spindle pole 72.9 42 0.00091 30.8 9.9 18 60-77 103-120 (196)
372 PRK13729 conjugal transfer pil 72.8 15 0.00032 37.7 7.7 13 44-56 77-89 (475)
373 KOG0976 Rho/Rac1-interacting s 72.8 26 0.00057 38.7 9.8 31 47-77 327-357 (1265)
374 KOG4196 bZIP transcription fac 72.8 33 0.00072 29.9 8.8 56 61-117 45-102 (135)
375 KOG0612 Rho-associated, coiled 72.7 46 0.001 37.9 11.9 40 86-125 512-551 (1317)
376 PF07798 DUF1640: Protein of u 72.7 64 0.0014 28.0 12.5 31 50-80 58-89 (177)
377 PRK09841 cryptic autophosphory 72.7 62 0.0013 34.0 12.5 29 45-73 269-297 (726)
378 PF05761 5_nucleotid: 5' nucle 72.7 15 0.00033 36.9 7.8 36 45-81 324-359 (448)
379 PF05600 DUF773: Protein of un 72.5 25 0.00055 35.9 9.4 60 51-114 433-492 (507)
380 PF05667 DUF812: Protein of un 72.3 50 0.0011 34.6 11.6 75 46-124 331-408 (594)
381 PRK03947 prefoldin subunit alp 72.3 54 0.0012 27.0 11.6 39 88-126 93-131 (140)
382 KOG3859 Septins (P-loop GTPase 72.2 22 0.00047 35.2 8.4 31 87-117 375-405 (406)
383 PF14915 CCDC144C: CCDC144C pr 72.1 1E+02 0.0022 30.2 13.4 80 38-117 216-299 (305)
384 PF10226 DUF2216: Uncharacteri 72.0 13 0.00028 34.1 6.5 67 49-115 19-88 (195)
385 PRK08032 fliD flagellar cappin 71.9 42 0.00091 33.5 10.6 46 59-104 415-460 (462)
386 PF15003 HAUS2: HAUS augmin-li 71.9 76 0.0017 30.6 11.8 86 39-124 86-192 (277)
387 PF04859 DUF641: Plant protein 71.9 13 0.00028 31.9 6.2 23 48-70 78-100 (131)
388 COG0419 SbcC ATPase involved i 71.9 43 0.00093 36.0 11.3 85 42-129 472-560 (908)
389 PF03357 Snf7: Snf7; InterPro 71.8 54 0.0012 27.0 9.7 23 37-59 9-31 (171)
390 KOG0239 Kinesin (KAR3 subfamil 71.7 67 0.0015 34.2 12.5 51 52-102 243-293 (670)
391 PF04871 Uso1_p115_C: Uso1 / p 71.7 62 0.0013 27.5 10.8 72 47-122 2-74 (136)
392 COG3937 Uncharacterized conser 71.7 61 0.0013 27.4 10.5 54 64-117 50-104 (108)
393 PRK10698 phage shock protein P 71.6 80 0.0017 28.7 14.3 38 88-125 98-142 (222)
394 PF14282 FlxA: FlxA-like prote 71.5 23 0.00049 28.8 7.2 42 40-81 23-68 (106)
395 PTZ00419 valyl-tRNA synthetase 71.4 11 0.00024 40.9 6.9 27 48-74 927-953 (995)
396 PF02050 FliJ: Flagellar FliJ 71.4 41 0.00089 25.3 10.3 34 48-81 3-36 (123)
397 PF07798 DUF1640: Protein of u 71.1 70 0.0015 27.8 12.9 16 66-81 53-68 (177)
398 PF06810 Phage_GP20: Phage min 71.1 31 0.00067 29.9 8.4 54 52-106 15-68 (155)
399 PRK02119 hypothetical protein; 70.9 33 0.00071 26.4 7.6 44 61-108 6-49 (73)
400 PF05557 MAD: Mitotic checkpoi 70.8 18 0.00038 37.9 8.0 22 88-109 565-586 (722)
401 COG1777 Predicted transcriptio 70.7 30 0.00065 32.2 8.6 69 52-122 120-191 (217)
402 PF14193 DUF4315: Domain of un 70.7 13 0.00027 29.7 5.4 35 84-118 3-37 (83)
403 KOG0243 Kinesin-like protein [ 70.4 73 0.0016 35.8 12.7 33 68-104 480-512 (1041)
404 KOG0614 cGMP-dependent protein 70.2 16 0.00035 38.6 7.4 45 37-81 18-62 (732)
405 PF11221 Med21: Subunit 21 of 70.2 64 0.0014 27.3 10.0 77 26-113 63-142 (144)
406 PF14992 TMCO5: TMCO5 family 70.1 17 0.00038 34.8 7.2 35 43-77 11-45 (280)
407 PRK14143 heat shock protein Gr 70.0 68 0.0015 29.9 10.9 31 43-73 74-104 (238)
408 PF10458 Val_tRNA-synt_C: Valy 70.0 27 0.00058 25.9 6.8 27 48-74 2-28 (66)
409 KOG0978 E3 ubiquitin ligase in 69.9 56 0.0012 35.2 11.4 75 40-114 535-612 (698)
410 KOG4674 Uncharacterized conser 69.8 56 0.0012 38.6 12.1 42 82-123 738-779 (1822)
411 PF12998 ING: Inhibitor of gro 69.8 48 0.001 25.4 10.6 73 44-116 9-99 (105)
412 KOG0971 Microtubule-associated 69.7 1.2E+02 0.0026 34.2 13.9 90 39-128 951-1051(1243)
413 PF01920 Prefoldin_2: Prefoldi 69.4 49 0.0011 25.3 11.7 35 87-124 67-101 (106)
414 PF09738 DUF2051: Double stran 69.3 51 0.0011 31.8 10.2 22 52-73 114-135 (302)
415 PRK00888 ftsB cell division pr 69.3 24 0.00051 28.8 6.9 33 84-116 29-61 (105)
416 PF15397 DUF4618: Domain of un 69.2 1.1E+02 0.0023 29.2 12.8 24 28-51 48-71 (258)
417 PF09311 Rab5-bind: Rabaptin-l 69.0 4.1 8.8E-05 35.7 2.6 81 30-114 2-82 (181)
418 PF15272 BBP1_C: Spindle pole 68.8 36 0.00078 31.2 8.6 47 63-109 81-127 (196)
419 KOG4360 Uncharacterized coiled 68.7 69 0.0015 33.7 11.4 77 36-112 159-249 (596)
420 PRK10929 putative mechanosensi 68.6 85 0.0018 35.4 12.9 93 23-115 163-284 (1109)
421 PRK13922 rod shape-determining 68.6 83 0.0018 28.7 11.1 38 83-120 70-107 (276)
422 PRK05431 seryl-tRNA synthetase 68.3 45 0.00098 33.0 9.9 62 66-128 44-105 (425)
423 PF12128 DUF3584: Protein of u 68.2 1.4E+02 0.003 33.5 14.5 38 42-79 606-643 (1201)
424 PF09432 THP2: Tho complex sub 68.2 82 0.0018 27.5 10.2 71 48-122 50-130 (132)
425 PRK13169 DNA replication intia 68.2 35 0.00075 28.5 7.7 34 82-115 22-55 (110)
426 COG1340 Uncharacterized archae 68.1 58 0.0013 31.6 10.2 65 47-115 31-95 (294)
427 PRK10807 paraquat-inducible pr 68.1 1.2E+02 0.0026 31.3 13.2 104 20-129 406-526 (547)
428 COG0172 SerS Seryl-tRNA synthe 68.0 74 0.0016 32.3 11.4 83 42-131 28-110 (429)
429 KOG2077 JNK/SAPK-associated pr 68.0 43 0.00093 35.8 9.9 49 33-81 319-367 (832)
430 PF14662 CCDC155: Coiled-coil 68.0 1E+02 0.0022 28.4 12.8 22 93-114 78-99 (193)
431 KOG2129 Uncharacterized conser 68.0 74 0.0016 32.9 11.3 40 86-128 187-226 (552)
432 PF09728 Taxilin: Myosin-like 67.8 1.2E+02 0.0025 29.1 13.0 69 40-109 26-98 (309)
433 PF14362 DUF4407: Domain of un 67.8 1E+02 0.0022 28.5 13.6 27 55-81 133-159 (301)
434 PF09302 XLF: XLF (XRCC4-like 67.7 7.5 0.00016 33.0 3.9 43 31-74 128-170 (171)
435 PRK00736 hypothetical protein; 67.7 28 0.0006 26.4 6.5 39 69-111 3-41 (68)
436 PRK10636 putative ABC transpor 67.5 56 0.0012 33.7 10.7 64 53-116 559-625 (638)
437 PRK00295 hypothetical protein; 67.5 30 0.00064 26.2 6.7 19 52-70 7-25 (68)
438 PF07989 Microtub_assoc: Micro 67.4 53 0.0012 25.5 8.2 70 45-114 2-75 (75)
439 KOG3759 Uncharacterized RUN do 67.4 1E+02 0.0022 32.3 12.3 106 19-131 95-251 (621)
440 KOG0963 Transcription factor/C 67.3 1.1E+02 0.0023 32.8 12.6 71 51-121 279-352 (629)
441 PHA03161 hypothetical protein; 67.0 50 0.0011 29.2 8.8 9 29-37 39-47 (150)
442 PRK14160 heat shock protein Gr 66.9 1E+02 0.0022 28.4 11.2 39 43-81 54-92 (211)
443 KOG0243 Kinesin-like protein [ 66.9 52 0.0011 36.8 10.8 28 87-114 474-501 (1041)
444 TIGR03545 conserved hypothetic 66.8 1.1E+02 0.0023 31.9 12.5 79 38-116 177-268 (555)
445 PF04849 HAP1_N: HAP1 N-termin 66.6 62 0.0013 31.5 10.2 30 52-81 215-244 (306)
446 PF06705 SF-assemblin: SF-asse 66.6 1E+02 0.0022 28.0 12.7 41 41-81 10-51 (247)
447 KOG0018 Structural maintenance 66.4 59 0.0013 36.6 11.0 52 30-81 386-440 (1141)
448 PF09731 Mitofilin: Mitochondr 66.2 1.5E+02 0.0033 29.9 14.3 26 92-117 367-392 (582)
449 KOG2896 UV radiation resistanc 66.1 98 0.0021 31.1 11.6 26 45-70 82-107 (377)
450 PF10226 DUF2216: Uncharacteri 65.8 69 0.0015 29.5 9.7 39 87-125 84-130 (195)
451 PF00523 Fusion_gly: Fusion gl 65.6 61 0.0013 33.4 10.4 74 33-116 105-178 (490)
452 TIGR01730 RND_mfp RND family e 65.4 73 0.0016 28.5 9.9 10 100-109 113-122 (322)
453 PF11570 E2R135: Coiled-coil r 65.4 41 0.00089 29.4 7.8 55 45-99 3-57 (136)
454 PF10267 Tmemb_cc2: Predicted 65.4 1.6E+02 0.0034 29.7 13.3 89 39-129 222-329 (395)
455 PF05701 WEMBL: Weak chloropla 65.0 96 0.0021 31.6 11.7 38 44-81 282-319 (522)
456 PF09787 Golgin_A5: Golgin sub 65.0 43 0.00093 33.8 9.2 67 40-106 113-204 (511)
457 PF08537 NBP1: Fungal Nap bind 64.9 91 0.002 30.7 11.0 34 18-51 109-148 (323)
458 PF05531 NPV_P10: Nucleopolyhe 64.9 34 0.00074 27.0 6.7 24 92-115 38-61 (75)
459 PF14739 DUF4472: Domain of un 64.9 84 0.0018 26.4 10.3 31 82-112 63-93 (108)
460 COG5570 Uncharacterized small 64.8 13 0.00029 27.9 4.2 18 64-81 5-22 (57)
461 PF11500 Cut12: Spindle pole b 64.7 22 0.00048 31.4 6.2 33 49-81 104-136 (152)
462 PF15456 Uds1: Up-regulated Du 64.6 87 0.0019 26.5 9.8 30 51-81 23-52 (124)
463 PF09730 BicD: Microtubule-ass 64.6 97 0.0021 33.5 12.0 65 44-112 367-442 (717)
464 PF14661 HAUS6_N: HAUS augmin- 64.6 1.1E+02 0.0025 27.9 11.9 56 26-81 140-195 (247)
465 PRK13182 racA polar chromosome 64.4 70 0.0015 28.4 9.4 22 96-117 125-146 (175)
466 PF05769 DUF837: Protein of un 64.3 1.1E+02 0.0023 27.4 12.1 86 39-125 13-107 (181)
467 PLN02678 seryl-tRNA synthetase 64.2 91 0.002 31.6 11.2 42 88-129 70-111 (448)
468 PF07200 Mod_r: Modifier of ru 64.2 79 0.0017 26.3 9.3 85 43-128 34-121 (150)
469 PRK11415 hypothetical protein; 64.1 21 0.00046 27.4 5.4 59 52-111 5-68 (74)
470 PF06548 Kinesin-related: Kine 64.0 1.4E+02 0.003 31.0 12.4 18 93-110 452-469 (488)
471 smart00502 BBC B-Box C-termina 63.9 64 0.0014 24.7 12.4 22 85-106 75-96 (127)
472 PF05859 Mis12: Mis12 protein; 63.8 5.9 0.00013 33.5 2.5 55 11-70 86-142 (144)
473 PF03148 Tektin: Tektin family 63.8 1.5E+02 0.0033 29.0 13.3 81 32-117 205-286 (384)
474 PRK09841 cryptic autophosphory 63.7 61 0.0013 34.0 10.3 31 102-132 369-399 (726)
475 cd07638 BAR_ACAP2 The Bin/Amph 63.6 83 0.0018 28.6 9.9 80 44-127 3-85 (200)
476 PRK10865 protein disaggregatio 63.6 33 0.00071 37.0 8.5 14 21-34 385-398 (857)
477 KOG0406 Glutathione S-transfer 63.5 32 0.00069 32.1 7.4 57 19-81 87-146 (231)
478 KOG4593 Mitotic checkpoint pro 63.4 1.5E+02 0.0033 32.1 13.0 26 100-125 238-263 (716)
479 PF10212 TTKRSYEDQ: Predicted 63.1 1.3E+02 0.0029 31.4 12.3 79 41-119 418-514 (518)
480 KOG3650 Predicted coiled-coil 63.1 39 0.00085 28.5 7.1 30 82-111 77-106 (120)
481 KOG3091 Nuclear pore complex, 63.0 1.2E+02 0.0026 31.6 11.9 92 31-122 387-507 (508)
482 PF05531 NPV_P10: Nucleopolyhe 63.0 51 0.0011 26.1 7.3 40 37-80 12-51 (75)
483 COG4477 EzrA Negative regulato 62.9 85 0.0018 33.0 10.9 84 42-125 346-436 (570)
484 KOG1003 Actin filament-coating 62.9 1.3E+02 0.0028 27.9 13.7 97 31-131 45-158 (205)
485 cd00632 Prefoldin_beta Prefold 62.9 30 0.00064 27.5 6.2 40 37-76 64-103 (105)
486 PF02996 Prefoldin: Prefoldin 62.9 18 0.00039 28.6 5.0 63 12-76 55-117 (120)
487 PF15030 DUF4527: Protein of u 62.8 80 0.0017 30.4 9.9 35 40-74 13-47 (277)
488 KOG0709 CREB/ATF family transc 62.7 16 0.00034 37.5 5.6 47 62-112 270-316 (472)
489 KOG0517 Beta-spectrin [Cytoske 62.6 59 0.0013 39.0 10.4 103 32-138 939-1058(2473)
490 PF10498 IFT57: Intra-flagella 62.6 1.6E+02 0.0035 28.9 13.0 85 38-122 229-317 (359)
491 PF12004 DUF3498: Domain of un 62.5 2.5 5.4E-05 43.2 0.0 59 42-100 368-433 (495)
492 PF08781 DP: Transcription fac 62.4 42 0.00091 29.3 7.4 46 43-96 1-46 (142)
493 PF10883 DUF2681: Protein of u 62.4 29 0.00064 28.0 6.1 39 83-121 24-62 (87)
494 KOG0240 Kinesin (SMY1 subfamil 62.3 1.2E+02 0.0025 32.3 11.7 79 47-125 418-506 (607)
495 KOG0244 Kinesin-like protein [ 62.2 24 0.00053 38.8 7.2 86 41-126 465-553 (913)
496 KOG2180 Late Golgi protein sor 62.0 62 0.0013 35.1 9.9 78 45-126 42-123 (793)
497 PF04888 SseC: Secretion syste 62.0 1.3E+02 0.0029 27.8 12.2 78 30-107 224-304 (306)
498 PRK05689 fliJ flagellar biosyn 62.0 90 0.0019 25.8 13.5 86 30-119 11-115 (147)
499 KOG4360 Uncharacterized coiled 62.0 1.6E+02 0.0035 31.1 12.6 86 30-115 210-301 (596)
500 PRK09737 EcoKI restriction-mod 62.0 18 0.0004 34.1 5.7 39 88-126 372-414 (461)
No 1
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=96.87 E-value=0.025 Score=49.58 Aligned_cols=82 Identities=26% Similarity=0.434 Sum_probs=28.3
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 024140 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (272)
Q Consensus 41 ~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (272)
++.||..+..++..|+.++.++...|.+|+..+..|+..+. ..|+.....+..|..|..+|--+...|...+.+|+.
T Consensus 93 l~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~ 172 (194)
T PF08614_consen 93 LAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEE 172 (194)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555555554444 333444444444444444444444444444444444
Q ss_pred HHHHH
Q 024140 118 FRKTL 122 (272)
Q Consensus 118 FKk~L 122 (272)
=-+.|
T Consensus 173 En~~L 177 (194)
T PF08614_consen 173 ENREL 177 (194)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 33333
No 2
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.86 E-value=0.028 Score=47.88 Aligned_cols=78 Identities=21% Similarity=0.321 Sum_probs=53.3
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 024140 35 KITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (272)
Q Consensus 35 kIts~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDva 113 (272)
|+=.-++-.|+..+|..+..|-+...+|+..|..|+.|+..||..|- ++...+.+......+.+....++..|+|-|.
T Consensus 6 k~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld-~~~~~l~~~k~~lee~~~~~~~~E~l~rriq 83 (143)
T PF12718_consen 6 KLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELD-KLEEQLKEAKEKLEESEKRKSNAEQLNRRIQ 83 (143)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhHHHHHHhHHHHHhhHH
Confidence 34455677899999999999999999999999999999999999986 3333333333333333333333333444333
No 3
>PRK11637 AmiB activator; Provisional
Probab=96.84 E-value=0.019 Score=55.62 Aligned_cols=109 Identities=17% Similarity=0.254 Sum_probs=53.6
Q ss_pred CCCChhHHHhcCCCCchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH--
Q 024140 11 TFDLPEEVLQVLPSDPFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAEL-------QSQIESIYSSLS-- 81 (272)
Q Consensus 11 dF~lp~eil~vLP~DP~EQLdlarkIts~A~atRVs~LE~E~~~LR~~L~EKd~~i~~L-------q~r~s~le~~l~-- 81 (272)
.|.+-.-|+.+| |-++- ..++++.-...++.++..+++++.++...|.++ ++++..++.+|.
T Consensus 17 ~~~~~~~~~~~l-------l~~~~--~~~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~ 87 (428)
T PRK11637 17 RFAIRPILYASV-------LSAGV--LLCAFSAHASDNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQA 87 (428)
T ss_pred hhhhhhHHHHHH-------HHHHH--HHhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567766666665 22111 222222222344444444444444444444444 444444444443
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 024140 82 -DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (272)
Q Consensus 82 -~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq~ 128 (272)
.+|....++..++.++.+.|...++.+..++.+++.--+.+|..+..
T Consensus 88 ~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~ 135 (428)
T PRK11637 88 SRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555556666666666666666666666555444444444443
No 4
>PRK10884 SH3 domain-containing protein; Provisional
Probab=96.73 E-value=0.024 Score=51.17 Aligned_cols=69 Identities=26% Similarity=0.381 Sum_probs=43.3
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 024140 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (272)
Q Consensus 40 A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (272)
-...|+-+||.|+..|+++|++-+... .++...+ +.++..+.+...+|.+||+.|...+.++..++..|
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~~~~~~---~~~~~~l----~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l 158 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNNIDNTW---NQRTAEM----QQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAA 158 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788899999999999998865442 2222222 23333555555556666666666666666655444
No 5
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=96.62 E-value=0.03 Score=55.46 Aligned_cols=64 Identities=22% Similarity=0.305 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 52 HSALRSQLAEKDSRIAELQSQIESIYSSLS-------------------------DKLGQAQADKERLSKENEALTNTVR 106 (272)
Q Consensus 52 ~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~-------------------------~rL~~a~ee~~kL~~E~~~La~TvK 106 (272)
++.||..+.+..++..+||.+-..+|..|+ -.-..+++|++.|.+|+|+|+..+.
T Consensus 287 ar~Lr~~I~~VarENs~LqrQKle~e~~l~a~qeakek~~KEAqareaklqaec~rQ~qlaLEEKaaLrkerd~L~keLe 366 (442)
T PF06637_consen 287 ARSLRAGIERVARENSDLQRQKLEAEQGLQASQEAKEKAGKEAQAREAKLQAECARQTQLALEEKAALRKERDSLAKELE 366 (442)
T ss_pred HHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555554443 2233578888999999999999988
Q ss_pred HHhhhHHHH
Q 024140 107 KLQRDVSKL 115 (272)
Q Consensus 107 kL~rDvaKL 115 (272)
...|+++.|
T Consensus 367 ekkreleql 375 (442)
T PF06637_consen 367 EKKRELEQL 375 (442)
T ss_pred HHHHHHHHH
Confidence 888887763
No 6
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=96.59 E-value=0.034 Score=57.63 Aligned_cols=84 Identities=29% Similarity=0.406 Sum_probs=74.5
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024140 38 SIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS------DKLGQAQADKERLSKENEALTNTVRKLQRD 111 (272)
Q Consensus 38 s~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~------~rL~~a~ee~~kL~~E~~~La~TvKkL~rD 111 (272)
-+++-.+|.+||.|+..|+..+.|.++.|..|+.++..+...+. -.+...+.++.+|.++...=...|..|.+.
T Consensus 424 i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~ 503 (652)
T COG2433 424 IKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERK 503 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888999999999999999999999999999999999988877 445567788899999999999999999999
Q ss_pred HHHHHHHHHH
Q 024140 112 VSKLEVFRKT 121 (272)
Q Consensus 112 vaKLE~FKk~ 121 (272)
++.|+.+++-
T Consensus 504 l~~l~k~~~l 513 (652)
T COG2433 504 LAELRKMRKL 513 (652)
T ss_pred HHHHHHHHhh
Confidence 9999988773
No 7
>PRK11637 AmiB activator; Provisional
Probab=96.53 E-value=0.052 Score=52.60 Aligned_cols=68 Identities=9% Similarity=0.180 Sum_probs=28.8
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 024140 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSK 114 (272)
Q Consensus 43 tRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaK 114 (272)
.++..++.++..|..+|.+-...|.+++.++..++.++. ...+++.+++++.+.+...++++.|.+.+
T Consensus 68 ~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~----~l~~eI~~~q~~l~~~~~~l~~rlra~Y~ 135 (428)
T PRK11637 68 QQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQID----ELNASIAKLEQQQAAQERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444443332 44444444444444444444444444443
No 8
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=96.42 E-value=0.034 Score=48.74 Aligned_cols=72 Identities=18% Similarity=0.364 Sum_probs=48.4
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhHHHH
Q 024140 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNT-VRKLQRDVSKL 115 (272)
Q Consensus 40 A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~T-vKkL~rDvaKL 115 (272)
.+...+..|+.++..|...|.||+..|..|++-+..|.-++. .+.++..+|++||+.|... +++-++|..+|
T Consensus 120 ~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~----~~e~k~~~l~~En~~Lv~Rwm~~k~~eAe~m 192 (194)
T PF08614_consen 120 ELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLN----MLEEKLRKLEEENRELVERWMQRKAQEAERM 192 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555556666666666666666666666666666554 8899999999999999876 34455555544
No 9
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=96.36 E-value=0.05 Score=41.86 Aligned_cols=65 Identities=28% Similarity=0.435 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 024140 54 ALRSQLAEKDSRIAELQSQIESIYSS---LSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVF 118 (272)
Q Consensus 54 ~LR~~L~EKd~~i~~Lq~r~s~le~~---l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~F 118 (272)
.|-..|+|||..|+.|.+.-..|-.. +..-++.....+..+.++.+.|...+.++..++..|+.+
T Consensus 2 sl~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~ 69 (74)
T PF12329_consen 2 SLEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEER 69 (74)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778999999999999655555433 334444445555555555555555555555555555443
No 10
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=96.16 E-value=0.11 Score=43.56 Aligned_cols=30 Identities=20% Similarity=0.297 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 52 HSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 52 ~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~ 81 (272)
+.+|+.+++++++.+..++.+...++..+.
T Consensus 75 ~~rL~~~~~~~ere~~~~~~~~~~l~~~~~ 104 (151)
T PF11559_consen 75 VERLKEQLEELERELASAEEKERQLQKQLK 104 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555544
No 11
>PRK09039 hypothetical protein; Validated
Probab=96.14 E-value=0.097 Score=50.19 Aligned_cols=88 Identities=17% Similarity=0.233 Sum_probs=68.7
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-HHHH
Q 024140 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRD-VSKL 115 (272)
Q Consensus 40 A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rD-vaKL 115 (272)
....|+..|+.+...++....|....|.-|+.++..|..+|. +.|..+.++....+...+.|...+.++-.+ +..|
T Consensus 113 ~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l 192 (343)
T PRK09039 113 AAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQEL 192 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777788888888888888888888888888888877 666677777777777777777777666544 8889
Q ss_pred HHHHHHHHhhcc
Q 024140 116 EVFRKTLVQSLK 127 (272)
Q Consensus 116 E~FKk~LmqSLq 127 (272)
+.||..+..-|.
T Consensus 193 ~~~~~~~~~~l~ 204 (343)
T PRK09039 193 NRYRSEFFGRLR 204 (343)
T ss_pred HHhHHHHHHHHH
Confidence 999999977775
No 12
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=95.97 E-value=0.41 Score=41.31 Aligned_cols=96 Identities=26% Similarity=0.376 Sum_probs=70.1
Q ss_pred hHHHHHHHH-----HHHHHHhhhhhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 29 QLDVARKIT-----SIAISTRVSDLESEHSALRSQLA-------EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSK 96 (272)
Q Consensus 29 QLdlarkIt-----s~A~atRVs~LE~E~~~LR~~L~-------EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~ 96 (272)
||+|.-+.- +--+..||-+||+|+......+. .+.+.|..|+.++..+...+ .....+...|.+
T Consensus 5 ~l~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el----~~L~~EL~~l~s 80 (140)
T PF10473_consen 5 FLHVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSEL----NQLELELDTLRS 80 (140)
T ss_pred HHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 455544433 45577889999998776655433 34455666666666666555 488899999999
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 024140 97 ENEALTNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (272)
Q Consensus 97 E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq~ 128 (272)
||..|.....+.+..|.-||...-.+..-|+.
T Consensus 81 Ek~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~ 112 (140)
T PF10473_consen 81 EKENLDKELQKKQEKVSELESLNSSLENLLQE 112 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 99999999999999999999987766655554
No 13
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.67 E-value=0.19 Score=46.68 Aligned_cols=35 Identities=20% Similarity=0.355 Sum_probs=16.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 47 DLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 47 ~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~ 81 (272)
++++|..+++..+.+++..+.+|+.++..++..++
T Consensus 35 k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~ 69 (239)
T COG1579 35 KAKAELEALNKALEALEIELEDLENQVSQLESEIQ 69 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444
No 14
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.66 E-value=0.34 Score=45.14 Aligned_cols=83 Identities=22% Similarity=0.401 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH---HHH-------HHHHHHHHHHHHHH
Q 024140 32 VARKITSIAISTRVSDLESEHSALRSQLAE---KDSRIAELQSQIESIYSSLS---DKL-------GQAQADKERLSKEN 98 (272)
Q Consensus 32 larkIts~A~atRVs~LE~E~~~LR~~L~E---Kd~~i~~Lq~r~s~le~~l~---~rL-------~~a~ee~~kL~~E~ 98 (272)
++.+|.--.|..-|+++|.|+..+|.++.. |-..+.+ ++.+++|+.+++ .|+ ..+.++..+|+++.
T Consensus 48 ~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~-~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i 126 (239)
T COG1579 48 EALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKD-ERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEI 126 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677888899999999999888762 2211111 223344444443 333 35555566666666
Q ss_pred HHHHHHHHHHhhhHHHH
Q 024140 99 EALTNTVRKLQRDVSKL 115 (272)
Q Consensus 99 ~~La~TvKkL~rDvaKL 115 (272)
..|...+.++.+++.-+
T Consensus 127 ~~l~~~~~~~e~~~~e~ 143 (239)
T COG1579 127 EDLKERLERLEKNLAEA 143 (239)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66655555555555443
No 15
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.51 E-value=0.34 Score=47.44 Aligned_cols=97 Identities=10% Similarity=0.224 Sum_probs=60.1
Q ss_pred HhcCCCCchhhHHHHHHHH--------HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 19 LQVLPSDPFEQLDVARKIT--------SIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQAD 90 (272)
Q Consensus 19 l~vLP~DP~EQLdlarkIt--------s~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee 90 (272)
...++..|.+-..+..+|. ....+.++..++.++..|+.++.+....+..++..+..++..+...+....++
T Consensus 142 ~~f~~~~~~er~~il~~l~~~~~~~~~~~~~k~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e 221 (562)
T PHA02562 142 VPFMQLSAPARRKLVEDLLDISVLSEMDKLNKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNK 221 (562)
T ss_pred hhHhcCChHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555 34457777788888888888888888888888777777776655444444445
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHH
Q 024140 91 KERLSKENEALTNTVRKLQRDVSKL 115 (272)
Q Consensus 91 ~~kL~~E~~~La~TvKkL~rDvaKL 115 (272)
..+|.++...|...+.+|..++..|
T Consensus 222 ~~~l~~~~~~l~~~l~~l~~~i~~l 246 (562)
T PHA02562 222 YDELVEEAKTIKAEIEELTDELLNL 246 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555544444444444333
No 16
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=95.49 E-value=0.21 Score=41.85 Aligned_cols=68 Identities=22% Similarity=0.404 Sum_probs=54.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 024140 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (272)
Q Consensus 46 s~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (272)
..|+.++.+|+..+..-...+..|+++++.++.++. .+..+...|.++...+..++|.+..+|.||.+
T Consensus 55 e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~----~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~ 122 (151)
T PF11559_consen 55 EDLSDKLRRLRSDIERLQNDVERLKEQLEELERELA----SAEEKERQLQKQLKSLEAKLKQEKEELQKLKN 122 (151)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556667777777777777888888888887776 78888888999999999999999999999864
No 17
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=95.47 E-value=0.41 Score=42.70 Aligned_cols=86 Identities=23% Similarity=0.364 Sum_probs=43.7
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH----
Q 024140 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSK---- 114 (272)
Q Consensus 42 atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaK---- 114 (272)
+..+..++..+..||..+.+..+.|.+.++++..+..++. ..|....+...++.+....+.+.++.+.+.+.+
T Consensus 62 ~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 141 (302)
T PF10186_consen 62 KREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQ 141 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555566666666666666666666666665555 333322333334444444444444444444443
Q ss_pred HHHHHHHHHhhcc
Q 024140 115 LEVFRKTLVQSLK 127 (272)
Q Consensus 115 LE~FKk~LmqSLq 127 (272)
|..=++.+++.|.
T Consensus 142 l~~~r~~l~~~l~ 154 (302)
T PF10186_consen 142 LARRRRQLIQELS 154 (302)
T ss_pred HHHHHHHHHHHHH
Confidence 4444555665544
No 18
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=95.33 E-value=0.85 Score=41.08 Aligned_cols=89 Identities=17% Similarity=0.196 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024140 30 LDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQ 109 (272)
Q Consensus 30 LdlarkIts~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (272)
|+|.-+-..+||......||+.+..|...|.+..+.|.++..+=-..+.+...+|+...++-..|...|-.+...+..|.
T Consensus 123 LeLl~~~g~naW~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le 202 (221)
T PF05700_consen 123 LELLSKYGENAWLIHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIEVACEELE 202 (221)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777888999999999999999999999999999999997655555555557777888888888888888888888888
Q ss_pred hhHHHHHHH
Q 024140 110 RDVSKLEVF 118 (272)
Q Consensus 110 rDvaKLE~F 118 (272)
++|..|+.=
T Consensus 203 ~ei~~l~~~ 211 (221)
T PF05700_consen 203 QEIEQLKRK 211 (221)
T ss_pred HHHHHHHHH
Confidence 777777543
No 19
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=95.22 E-value=0.62 Score=39.94 Aligned_cols=79 Identities=18% Similarity=0.360 Sum_probs=42.5
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 024140 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (272)
Q Consensus 40 A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE 116 (272)
....+...|+.|+..+...+.+...++..+++....+...+. +++....+...++.+|-..|.+-++.+.+.+..++
T Consensus 85 ~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~ 164 (191)
T PF04156_consen 85 ELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELR 164 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556666666666666666666555555554443333 55666666666666666666543333334444443
Q ss_pred HH
Q 024140 117 VF 118 (272)
Q Consensus 117 ~F 118 (272)
..
T Consensus 165 ~~ 166 (191)
T PF04156_consen 165 SQ 166 (191)
T ss_pred HH
Confidence 33
No 20
>PRK03918 chromosome segregation protein; Provisional
Probab=95.19 E-value=0.67 Score=48.04 Aligned_cols=94 Identities=24% Similarity=0.305 Sum_probs=41.4
Q ss_pred cCCCCchhhHHHHHHHHHHHHHHhhhhhHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHH
Q 024140 21 VLPSDPFEQLDVARKITSIAISTRVSDLESEH----------SALRSQLAEKDSRIAELQSQIESIYSSLS------DKL 84 (272)
Q Consensus 21 vLP~DP~EQLdlarkIts~A~atRVs~LE~E~----------~~LR~~L~EKd~~i~~Lq~r~s~le~~l~------~rL 84 (272)
++-.|-|+++.-..+-....+..++..|+..+ ..|+.++.+....+..++.++..++.++. ..|
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~i~~~l~~l~~~~~~l~~ei~~l~~e~~~l~~~~~~~~~~l~~l 233 (880)
T PRK03918 154 ILGLDDYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKEL 233 (880)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555554444444444555555544443 23333333444444444444444444443 233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 024140 85 GQAQADKERLSKENEALTNTVRKLQRDVSK 114 (272)
Q Consensus 85 ~~a~ee~~kL~~E~~~La~TvKkL~rDvaK 114 (272)
....++...|.++...|....+.|..++.+
T Consensus 234 ~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~ 263 (880)
T PRK03918 234 EELKEEIEELEKELESLEGSKRKLEEKIRE 263 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444433333
No 21
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=95.05 E-value=0.5 Score=48.36 Aligned_cols=44 Identities=16% Similarity=0.305 Sum_probs=34.6
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Q 024140 38 SIAISTRVSDLESEHSALRSQLAE--KDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 38 s~A~atRVs~LE~E~~~LR~~L~E--Kd~~i~~Lq~r~s~le~~l~ 81 (272)
..++..++..||.|+..|.++|.. .+..|..|++++..++..+.
T Consensus 393 ~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~ 438 (650)
T TIGR03185 393 KSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELF 438 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Confidence 567788899999999999999974 44677777777777777665
No 22
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=95.01 E-value=0.99 Score=43.86 Aligned_cols=98 Identities=21% Similarity=0.303 Sum_probs=79.1
Q ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH----------------
Q 024140 28 EQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQ---------------- 88 (272)
Q Consensus 28 EQLdlarkIts~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~---~rL~~a~---------------- 88 (272)
..|.-...-|..||..||...+.--..|-.++.+-..+|++++.-+..|+.++. +-|+.|.
T Consensus 236 ~dl~~Q~~~vn~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~R~~RP~vElcr 315 (384)
T PF03148_consen 236 NDLRAQADAVNAALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLENRTQRPNVELCR 315 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHhcCCchHHHH
Confidence 445555666789999999998888888888888888889999999999988888 3333322
Q ss_pred -HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Q 024140 89 -ADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQS 125 (272)
Q Consensus 89 -ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqS 125 (272)
.-+..|.+|-..|..++.+|+..+...+..-+.|...
T Consensus 316 D~~q~~L~~Ev~~l~~~i~~L~~~L~~a~~~l~~L~~~ 353 (384)
T PF03148_consen 316 DPPQYGLIEEVKELRESIEALQEKLDEAEASLQKLERT 353 (384)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2237899999999999999999999998888888765
No 23
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.01 E-value=0.1 Score=49.63 Aligned_cols=34 Identities=29% Similarity=0.413 Sum_probs=31.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYS 78 (272)
Q Consensus 45 Vs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~ 78 (272)
+..|+.||++|+..|.+||+.|-+-.++|+.|-.
T Consensus 227 i~~lkeeia~Lkk~L~qkdq~ileKdkqisnLKa 260 (305)
T KOG3990|consen 227 IQKLKEEIARLKKLLHQKDQLILEKDKQISNLKA 260 (305)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHhhhhhhhccCc
Confidence 5689999999999999999999999999998865
No 24
>PRK02224 chromosome segregation protein; Provisional
Probab=94.87 E-value=0.8 Score=47.74 Aligned_cols=6 Identities=17% Similarity=0.285 Sum_probs=2.5
Q ss_pred hhhHHH
Q 024140 27 FEQLDV 32 (272)
Q Consensus 27 ~EQLdl 32 (272)
||+++-
T Consensus 164 ~e~~~~ 169 (880)
T PRK02224 164 LEEYRE 169 (880)
T ss_pred HHHHHH
Confidence 444433
No 25
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=94.71 E-value=0.35 Score=46.74 Aligned_cols=74 Identities=20% Similarity=0.387 Sum_probs=60.2
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHH----------------HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 38 SIAISTRVSDLESEHSALRSQLAE----------------KDSRI---AELQSQIESIYSSLSDKLGQAQADKERLSKEN 98 (272)
Q Consensus 38 s~A~atRVs~LE~E~~~LR~~L~E----------------Kd~~i---~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~ 98 (272)
...+..|+..++.++.-||.+++. |.+.| +.+++++..|+..|+ ...+|.+.|..||
T Consensus 88 v~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~q----s~lDEkeEl~~ER 163 (319)
T PF09789_consen 88 VEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQ----SLLDEKEELVTER 163 (319)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 457778888888888888887754 45555 455678888888888 9999999999999
Q ss_pred HHHHHHHHHHhhhHHHH
Q 024140 99 EALTNTVRKLQRDVSKL 115 (272)
Q Consensus 99 ~~La~TvKkL~rDvaKL 115 (272)
|....-|-+||.++..+
T Consensus 164 D~yk~K~~RLN~ELn~~ 180 (319)
T PF09789_consen 164 DAYKCKAHRLNHELNYI 180 (319)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999998764
No 26
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=94.63 E-value=0.43 Score=47.93 Aligned_cols=71 Identities=18% Similarity=0.220 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 024140 55 LRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (272)
Q Consensus 55 LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq~d 129 (272)
++.|+.--...-..+..++...|.+|+ ...+|+.+|.+|+-.+..|+|.|.+|+-.+|+.+=.+.+-+.+-
T Consensus 32 ~~aq~~~~~a~~~ai~a~~~~~E~~l~----~Lq~e~~~l~e~~v~~~a~~~~~t~~~~~~en~~~r~~~eir~~ 102 (459)
T KOG0288|consen 32 LSAQLVILRAESRAIKAKLQEKELELN----RLQEENTQLNEERVREEATEKTLTVDVLIAENLRIRSLNEIREL 102 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344444444444443 44455556666666666677777777777776666555555443
No 27
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=94.61 E-value=0.84 Score=44.13 Aligned_cols=86 Identities=31% Similarity=0.457 Sum_probs=51.3
Q ss_pred HHHHHhhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHh
Q 024140 39 IAISTRVSDLESEHSALRSQLA-EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNT--------VRKLQ 109 (272)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~L~-EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~T--------vKkL~ 109 (272)
+.+..|+.+|-.|-..|=.+|. |...++.-|+.++..|+.+.. .......+|.+|+-.|.++ |.+|.
T Consensus 109 n~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~----~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~ 184 (310)
T PF09755_consen 109 NDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKS----AKQEELERLRREKVDLENTLEQEQEALVNRLW 184 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444 344444555555555544332 2233345677777777666 57899
Q ss_pred hhHHHHHHHHHHHHhhccc
Q 024140 110 RDVSKLEVFRKTLVQSLKD 128 (272)
Q Consensus 110 rDvaKLE~FKk~LmqSLq~ 128 (272)
+.+++|++=||.|=..|..
T Consensus 185 Kqm~~l~~eKr~Lq~~l~~ 203 (310)
T PF09755_consen 185 KQMDKLEAEKRRLQEKLEQ 203 (310)
T ss_pred HHHHHHHHHHHHHHHHHcc
Confidence 9999999999998877754
No 28
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=94.52 E-value=1.2 Score=35.40 Aligned_cols=79 Identities=23% Similarity=0.296 Sum_probs=58.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-------HHH
Q 024140 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSK-------LEV 117 (272)
Q Consensus 45 Vs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaK-------LE~ 117 (272)
+-+||.+...++..+..|-..+..|++++..|+.+.. .+.++.-.+-+-+++|.+-+|+|+..+.| |..
T Consensus 5 L~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~----kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~ 80 (96)
T PF08647_consen 5 LVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKA----KADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKE 80 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4578899999999999999999999999999999887 66666666666666666666666665554 554
Q ss_pred HHHHHHhhcc
Q 024140 118 FRKTLVQSLK 127 (272)
Q Consensus 118 FKk~LmqSLq 127 (272)
.=+.+++.|.
T Consensus 81 ~E~~~~~~l~ 90 (96)
T PF08647_consen 81 TEKEFVRKLK 90 (96)
T ss_pred HHHHHHHHHH
Confidence 4444554443
No 29
>PRK10884 SH3 domain-containing protein; Provisional
Probab=94.51 E-value=0.53 Score=42.60 Aligned_cols=68 Identities=13% Similarity=0.220 Sum_probs=42.9
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 024140 39 IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (272)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDva 113 (272)
-++...+.+|+.+...++++.. +..++|++++..++..+. ...++|.+|.+|...+.+.+..|+.++.
T Consensus 96 p~le~el~~l~~~l~~~~~~~~---~~~~~l~~~~~~~~~~~~----~L~~~n~~L~~~l~~~~~~~~~l~~~~~ 163 (206)
T PRK10884 96 PDLENQVKTLTDKLNNIDNTWN---QRTAEMQQKVAQSDSVIN----GLKEENQKLKNQLIVAQKKVDAANLQLD 163 (206)
T ss_pred HHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677888888888888887654 555666666666665554 4555555555555555555555544433
No 30
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=94.47 E-value=0.86 Score=38.88 Aligned_cols=78 Identities=19% Similarity=0.326 Sum_probs=49.5
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 024140 38 SIAISTRVSDLESEHSALRSQLAEKDSRI----------AELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNT 104 (272)
Q Consensus 38 s~A~atRVs~LE~E~~~LR~~L~EKd~~i----------~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~T 104 (272)
-.++-.|+..||.++..+..+|.+-...+ ..|+.||..||.+|- .+|+.+.+........-+-+...
T Consensus 37 I~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRk 116 (143)
T PF12718_consen 37 ITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERK 116 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 34677888888888887777766433332 346666666766666 66666666666666666666666
Q ss_pred HHHHhhhHHHH
Q 024140 105 VRKLQRDVSKL 115 (272)
Q Consensus 105 vKkL~rDvaKL 115 (272)
|+.|......+
T Consensus 117 v~~le~~~~~~ 127 (143)
T PF12718_consen 117 VKALEQERDQW 127 (143)
T ss_pred HHHHHhhHHHH
Confidence 66665544433
No 31
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=94.42 E-value=0.74 Score=47.44 Aligned_cols=80 Identities=18% Similarity=0.342 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHH------HhhhhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 024140 31 DVARKITSIAIS------TRVSDLESEHSALRSQLAEKDSRI-------AELQSQIESIYSSLS---DKLGQAQADKERL 94 (272)
Q Consensus 31 dlarkIts~A~a------tRVs~LE~E~~~LR~~L~EKd~~i-------~~Lq~r~s~le~~l~---~rL~~a~ee~~kL 94 (272)
.=||++..-+-+ --+.+|+.|+..||.++.++.... .+...+++.+++++. .+.+..+++...|
T Consensus 95 ~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~L 174 (546)
T KOG0977|consen 95 ATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRL 174 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 345666655433 346778888888888888885443 455667777887777 7788888888888
Q ss_pred HHHHHHHHHHHHHHhh
Q 024140 95 SKENEALTNTVRKLQR 110 (272)
Q Consensus 95 ~~E~~~La~TvKkL~r 110 (272)
.+|+..|-..+..+..
T Consensus 175 k~en~rl~~~l~~~r~ 190 (546)
T KOG0977|consen 175 KAENSRLREELARARK 190 (546)
T ss_pred HHHhhhhHHHHHHHHH
Confidence 8888877776666554
No 32
>PHA02562 46 endonuclease subunit; Provisional
Probab=94.42 E-value=0.52 Score=46.24 Aligned_cols=35 Identities=14% Similarity=0.264 Sum_probs=13.7
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIY 77 (272)
Q Consensus 43 tRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le 77 (272)
.|+..|+.++..+|..+.++-+.+..|+.++..|+
T Consensus 337 ~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~ 371 (562)
T PHA02562 337 KKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQ 371 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333443333333334444444433
No 33
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=94.35 E-value=0.68 Score=35.43 Aligned_cols=60 Identities=25% Similarity=0.340 Sum_probs=38.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 47 DLESEHSALRSQLAEKDSRIAELQ--SQIESIYSSLS-DKLGQAQADKERLSKENEALTNTVR 106 (272)
Q Consensus 47 ~LE~E~~~LR~~L~EKd~~i~~Lq--~r~s~le~~l~-~rL~~a~ee~~kL~~E~~~La~TvK 106 (272)
+||+++..||..|.-=.+++...+ .+.-..|+.-. .+|..+-+++.+|..|++.|....+
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~ 64 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELE 64 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688999999988854444333222 22222233222 6777888888888888888876633
No 34
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=94.33 E-value=0.79 Score=43.58 Aligned_cols=78 Identities=19% Similarity=0.319 Sum_probs=43.6
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 39 IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS----------DKLGQAQADKERLSKENEALTNTVRKL 108 (272)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~----------~rL~~a~ee~~kL~~E~~~La~TvKkL 108 (272)
.++...+..||.|...|.+.|.+=+..-.+|.+.+..|+.++. .......-+...+++|+++|.+++.-.
T Consensus 46 ~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~ 125 (314)
T PF04111_consen 46 EELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYA 125 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666655555555555555555543 111122223344556666666666666
Q ss_pred hhhHHHHH
Q 024140 109 QRDVSKLE 116 (272)
Q Consensus 109 ~rDvaKLE 116 (272)
..++.+|+
T Consensus 126 ~~~L~~L~ 133 (314)
T PF04111_consen 126 SNQLDRLR 133 (314)
T ss_dssp HHHHHCHH
T ss_pred HHHHHHHH
Confidence 66666664
No 35
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=94.26 E-value=0.47 Score=49.89 Aligned_cols=41 Identities=32% Similarity=0.463 Sum_probs=35.5
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 36 ITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESI 76 (272)
Q Consensus 36 Its~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~l 76 (272)
-...+...|+..||.|+.+||..|..|++.+..|++.+..|
T Consensus 538 e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~l 578 (697)
T PF09726_consen 538 ECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQEL 578 (697)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557899999999999999999999999999999877433
No 36
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=94.18 E-value=0.51 Score=43.82 Aligned_cols=84 Identities=23% Similarity=0.328 Sum_probs=61.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------------------
Q 024140 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-------------------------------------------- 81 (272)
Q Consensus 46 s~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~-------------------------------------------- 81 (272)
..|+.++..|.+++.|-.+.|..||+-+..++....
T Consensus 2 ~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~~~~~siL 81 (248)
T PF08172_consen 2 EELQKELSELEAKLEEQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGGGGDSSIL 81 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCCCCCCcccHH
Confidence 578999999999999999999999999998885411
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH------HHHHHhhcccc
Q 024140 82 ----DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVF------RKTLVQSLKDD 129 (272)
Q Consensus 82 ----~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~F------Kk~LmqSLq~d 129 (272)
..=-.-.++|.+|.+|...+.+++.+|.++|++|++= |---|||.+..
T Consensus 82 pIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqSY~~~ 139 (248)
T PF08172_consen 82 PIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQSYNNK 139 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccc
Confidence 0001224677888888888888888888888887542 33456776643
No 37
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=94.02 E-value=1.4 Score=39.77 Aligned_cols=54 Identities=22% Similarity=0.355 Sum_probs=33.7
Q ss_pred hhHHHHHHHHHH------HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 28 EQLDVARKITSI------AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 28 EQLdlarkIts~------A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~ 81 (272)
.||.-|..+..- .+..|+.-+|.++.+.-.++..-...|.+|+.++..+...|.
T Consensus 99 ~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk 158 (237)
T PF00261_consen 99 QQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLK 158 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHH
Confidence 456666666633 345666667777776666666666666666666666655554
No 38
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=93.96 E-value=2.5 Score=37.84 Aligned_cols=79 Identities=18% Similarity=0.291 Sum_probs=54.6
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024140 38 SIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS------DKLGQAQADKERLSKENEALTNTVRKLQRD 111 (272)
Q Consensus 38 s~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~------~rL~~a~ee~~kL~~E~~~La~TvKkL~rD 111 (272)
.......|..+..|..+|+.-|..-...+.+|+.++...+..-. .|+....++...|.-|...|...+.+|.++
T Consensus 43 e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~E 122 (201)
T PF13851_consen 43 EERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQE 122 (201)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455567777777777777777777777777777776665433 677777777777777777777777777776
Q ss_pred HHHHH
Q 024140 112 VSKLE 116 (272)
Q Consensus 112 vaKLE 116 (272)
-.-|.
T Consensus 123 rdeL~ 127 (201)
T PF13851_consen 123 RDELY 127 (201)
T ss_pred HHHHH
Confidence 65554
No 39
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=93.95 E-value=2.3 Score=42.71 Aligned_cols=100 Identities=24% Similarity=0.317 Sum_probs=80.3
Q ss_pred chhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH----------
Q 024140 26 PFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-----DKLGQAQAD---------- 90 (272)
Q Consensus 26 P~EQLdlarkIts~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~-----~rL~~a~ee---------- 90 (272)
.-.||..=.-.+..||..|+...+.=..+|.-+|+.+.++|++.+..|..++.+|. -|+.+.+.+
T Consensus 261 tan~lr~Q~~~ve~af~~ri~etqdar~kL~~ql~k~leEi~~~e~~I~~le~airdK~~pLKVAqTRle~Rt~RPnvEL 340 (421)
T KOG2685|consen 261 TANDLRTQADAVELAFKKRIRETQDARNKLEWQLAKTLEEIADAENNIEALERAIRDKEGPLKVAQTRLENRTYRPNVEL 340 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccccHHHHHHHHHHcccCCchHH
Confidence 34566666667789999999999999999999999999999999999999999998 334443333
Q ss_pred -----HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Q 024140 91 -----KERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQS 125 (272)
Q Consensus 91 -----~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqS 125 (272)
+-.|..|--.|-.||..|.-.|++=|.-++.|...
T Consensus 341 CrD~AQ~~L~~EV~~l~~t~~~L~~kL~eA~~~l~~L~~~ 380 (421)
T KOG2685|consen 341 CRDQAQYRLVDEVHELDDTVAALKEKLDEAEDSLKLLVNH 380 (421)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788888888888888888888777666666543
No 40
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=93.90 E-value=2.4 Score=36.44 Aligned_cols=52 Identities=17% Similarity=0.330 Sum_probs=24.8
Q ss_pred CchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 25 DPFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (272)
Q Consensus 25 DP~EQLdlarkIts~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l 80 (272)
.-|||| +|-...|..++..=..|+.+||.....--+.+...++++..+...+
T Consensus 42 iDFeqL----kien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~ 93 (177)
T PF13870_consen 42 IDFEQL----KIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEEL 93 (177)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346776 3444455555544445555555444444444444444444333333
No 41
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=93.90 E-value=1 Score=47.30 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHH
Q 024140 89 ADKERLSKENEALTNTVRKLQRDVSK 114 (272)
Q Consensus 89 ee~~kL~~E~~~La~TvKkL~rDvaK 114 (272)
++...|.++.+.|...+..+...+.+
T Consensus 896 ~~~~~l~~~~~~l~~~~~~~~~~~~~ 921 (1164)
T TIGR02169 896 AQLRELERKIEELEAQIEKKRKRLSE 921 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 42
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=93.81 E-value=1.2 Score=40.58 Aligned_cols=75 Identities=27% Similarity=0.403 Sum_probs=57.6
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 024140 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (272)
Q Consensus 43 tRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (272)
-|--+||++..-+...+++-+.....|+.-+.-...+=+ .+-..+.++...|..|+..+-.++.+|+|.|.-|+.
T Consensus 105 irR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~ 182 (192)
T PF11180_consen 105 IRRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQR 182 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777777777777777777777655543333222 788889999999999999999999999999998874
No 43
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=93.81 E-value=1.4 Score=41.57 Aligned_cols=84 Identities=27% Similarity=0.410 Sum_probs=52.9
Q ss_pred hHHHHHHHHHHHHHH-------hhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 29 QLDVARKITSIAIST-------RVS---DLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKEN 98 (272)
Q Consensus 29 QLdlarkIts~A~at-------RVs---~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~ 98 (272)
-++|.||=.-+|+.. ||- .|-.....+|.+|.|-.....+|.+++..||..+- ..+++...|..||
T Consensus 104 D~elvrkEl~nAlvRAGLktL~~v~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~e----e~~erlk~le~E~ 179 (290)
T COG4026 104 DVELVRKELKNALVRAGLKTLQRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYE----EVQERLKRLEVEN 179 (290)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 357788877777642 221 33344566677777666667777777777777765 5555555566666
Q ss_pred HHHHHHHHHHhhhHHHHH
Q 024140 99 EALTNTVRKLQRDVSKLE 116 (272)
Q Consensus 99 ~~La~TvKkL~rDvaKLE 116 (272)
+.|..-.|+|-..|.+|+
T Consensus 180 s~LeE~~~~l~~ev~~L~ 197 (290)
T COG4026 180 SRLEEMLKKLPGEVYDLK 197 (290)
T ss_pred HHHHHHHHhchhHHHHHH
Confidence 666666666665555553
No 44
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=93.79 E-value=1.5 Score=49.21 Aligned_cols=111 Identities=20% Similarity=0.258 Sum_probs=73.5
Q ss_pred ChhHHHh-cCCCCchhhHHHHHHHHH---------------HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 14 LPEEVLQ-VLPSDPFEQLDVARKITS---------------IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIY 77 (272)
Q Consensus 14 lp~eil~-vLP~DP~EQLdlarkIts---------------~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le 77 (272)
|.++||. +||.+|.+=.+|+-+|.. .+=..|+..|++|+.+-|.....-.....+.++-+...+
T Consensus 1497 vA~~vL~l~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad 1576 (1758)
T KOG0994|consen 1497 VAEEVLALELPLTPEQIQQLTGEIQERVASLPNVDAILSRTKGDIARAENLQSEAERARSRAEDVKGQAEDVVEALEEAD 1576 (1758)
T ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4556664 799999998888888862 233568999999999888877655555555555555555
Q ss_pred HHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH----HHHHHHHh
Q 024140 78 SSLS----------DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE----VFRKTLVQ 124 (272)
Q Consensus 78 ~~l~----------~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE----~FKk~Lmq 124 (272)
.++. .-+..+.+...|.++|-..-...+..-+..|.+|| .+|...||
T Consensus 1577 ~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~q 1637 (1758)
T KOG0994|consen 1577 VAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQ 1637 (1758)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5544 34455666667777777666666665566665554 45555554
No 45
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=93.73 E-value=1.3 Score=51.61 Aligned_cols=91 Identities=24% Similarity=0.354 Sum_probs=80.2
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 38 SIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-----------DKLGQAQADKERLSKENEALTNTVR 106 (272)
Q Consensus 38 s~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~-----------~rL~~a~ee~~kL~~E~~~La~TvK 106 (272)
..+++..+.+|+.|+..||.++.|=...+++|+.+++.+..+++ .++....+.+.+|++.-..+...+.
T Consensus 1317 k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e 1396 (1930)
T KOG0161|consen 1317 KSALENALRQLEHELDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIE 1396 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 67889999999999999999999999999999999998888777 3356777778888888899999999
Q ss_pred HHhhhHHHHHHHHHHHHhhccc
Q 024140 107 KLQRDVSKLEVFRKTLVQSLKD 128 (272)
Q Consensus 107 kL~rDvaKLE~FKk~LmqSLq~ 128 (272)
-++.-.++||.-|..|+|-|.+
T Consensus 1397 ~~~~~~~~Lek~k~~l~~el~d 1418 (1930)
T KOG0161|consen 1397 AANAKNASLEKAKNRLQQELED 1418 (1930)
T ss_pred HHHHHHHHHHHHHHHHHhHHHH
Confidence 9999999999999999887654
No 46
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=93.53 E-value=0.67 Score=41.56 Aligned_cols=61 Identities=30% Similarity=0.431 Sum_probs=38.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-------DKLGQAQADKERLSKENEALTNTVR 106 (272)
Q Consensus 46 s~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~-------~rL~~a~ee~~kL~~E~~~La~TvK 106 (272)
..|..++..+..+|.+++..|.+|+.++.-....+. .|...+..++..|..|...|-+.+|
T Consensus 121 eeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klk 188 (194)
T PF15619_consen 121 EELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLK 188 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777788888888888888888888877776666 3333444444444444444444433
No 47
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=93.45 E-value=1.7 Score=41.18 Aligned_cols=13 Identities=31% Similarity=0.473 Sum_probs=5.0
Q ss_pred hhhhHHHHHHHHH
Q 024140 45 VSDLESEHSALRS 57 (272)
Q Consensus 45 Vs~LE~E~~~LR~ 57 (272)
-..|+.|+..||+
T Consensus 186 ~~~L~~e~~~Lk~ 198 (325)
T PF08317_consen 186 KAELEEELENLKQ 198 (325)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444333333
No 48
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=93.32 E-value=0.92 Score=45.46 Aligned_cols=67 Identities=21% Similarity=0.388 Sum_probs=35.3
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024140 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQ 109 (272)
Q Consensus 43 tRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (272)
.|..+...|++.+...+.+....-..|++.+..+|.++. ..|.+...+..++.+..+.+...+.+|.
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~ 107 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALE 107 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHH
Confidence 555666666666666666665555555555555555444 3333444444444444444444444443
No 49
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=93.18 E-value=1.1 Score=38.25 Aligned_cols=61 Identities=28% Similarity=0.432 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024140 47 DLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQ 109 (272)
Q Consensus 47 ~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (272)
.|..|+..|+.++.+-...+..|+..+..|...+. ..++.+.+.+|.+|+..|...+..|.
T Consensus 76 ~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t--~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 76 ELDAEIKELREELAELKKEVKSLEAELASLSSEPT--NEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555544555555544444444432 12333344444444444444444443
No 50
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=93.15 E-value=4.5 Score=36.10 Aligned_cols=41 Identities=27% Similarity=0.445 Sum_probs=23.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (272)
Q Consensus 40 A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l 80 (272)
....|+..|..++..+|..+.++.+.+.++++.+......|
T Consensus 67 ~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l 107 (302)
T PF10186_consen 67 ELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRL 107 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666555555555444443
No 51
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=93.12 E-value=2.7 Score=43.84 Aligned_cols=79 Identities=23% Similarity=0.326 Sum_probs=45.9
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHH
Q 024140 37 TSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS------------DKLGQAQADKERLSKENEALTNT 104 (272)
Q Consensus 37 ts~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~------------~rL~~a~ee~~kL~~E~~~La~T 104 (272)
.+.-|..|+..|-.++..|+.....=-.+|.+|+..+..|..++. ..-....++...|.+|+..|...
T Consensus 23 e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE~L~~q 102 (617)
T PF15070_consen 23 ESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELESLEEQ 102 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344466777777777777766666555666666666666665554 11123344455566666666666
Q ss_pred HHHHhhhHHHH
Q 024140 105 VRKLQRDVSKL 115 (272)
Q Consensus 105 vKkL~rDvaKL 115 (272)
++...++...|
T Consensus 103 lqaqv~~ne~L 113 (617)
T PF15070_consen 103 LQAQVENNEQL 113 (617)
T ss_pred HHHHHHHHHHH
Confidence 55554444443
No 52
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.11 E-value=1.8 Score=44.00 Aligned_cols=97 Identities=12% Similarity=0.182 Sum_probs=53.5
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHH
Q 024140 27 FEQLDVARKITSIAISTRVSDLES-EHSALRSQLAEKDSRIAELQSQIESIYSSLS-----------------DKLGQAQ 88 (272)
Q Consensus 27 ~EQLdlarkIts~A~atRVs~LE~-E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~-----------------~rL~~a~ 88 (272)
..||+--|+--. .+++++|. ++...|+.+.+|-....+|+...+.++.+-+ ..|+...
T Consensus 327 ~sqleSqr~y~e----~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~ 402 (493)
T KOG0804|consen 327 TSQLESQRKYYE----QIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEER 402 (493)
T ss_pred hhhhhHHHHHHH----HHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367777666544 67777776 7888887777666665554444443333322 2233444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 024140 89 ADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLK 127 (272)
Q Consensus 89 ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq 127 (272)
|++..|.+..+...+++|+++....+.-.=|..-++-||
T Consensus 403 E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLq 441 (493)
T KOG0804|consen 403 EENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQ 441 (493)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555556666666666555444333333333333
No 53
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=93.10 E-value=2.4 Score=43.89 Aligned_cols=63 Identities=17% Similarity=0.290 Sum_probs=34.0
Q ss_pred hHHHhcCCCCchhhHHHH--HHH------HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 16 EEVLQVLPSDPFEQLDVA--RKI------TSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYS 78 (272)
Q Consensus 16 ~eil~vLP~DP~EQLdla--rkI------ts~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~ 78 (272)
.++|-|.|..-+.|..|- .|= ....+...+..|+.++.+|...|.........|+.+...+..
T Consensus 129 ~DmLvV~~ka~~lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~ 199 (546)
T PF07888_consen 129 SDMLVVTTKAQLLQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTE 199 (546)
T ss_pred cceEEEehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366777777555443332 221 134555566666666666666666555555555555444433
No 54
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=92.94 E-value=2.3 Score=35.80 Aligned_cols=20 Identities=25% Similarity=0.448 Sum_probs=9.5
Q ss_pred HHHHhhhHHHHHHHHHHHHh
Q 024140 105 VRKLQRDVSKLEVFRKTLVQ 124 (272)
Q Consensus 105 vKkL~rDvaKLE~FKk~Lmq 124 (272)
|-.|.-||.-|+.+=|..++
T Consensus 98 veEL~~Dv~DlK~myr~Qi~ 117 (120)
T PF12325_consen 98 VEELRADVQDLKEMYREQID 117 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555544444443
No 55
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=92.92 E-value=4.1 Score=37.32 Aligned_cols=72 Identities=21% Similarity=0.277 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 024140 51 EHSALRSQLAEKDSRIAELQSQIESIYSSLS-------DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (272)
Q Consensus 51 E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~-------~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~L 122 (272)
|+..+|.++..-...+..|+.+...|+..+. ..+......+..|..|...|-..+....++...|-..|-.|
T Consensus 217 E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~L 295 (312)
T PF00038_consen 217 ELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQELLDVKLAL 295 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3444555555544444444444444444443 33444455556666666666666666666666666666554
No 56
>PRK03918 chromosome segregation protein; Provisional
Probab=92.91 E-value=1.9 Score=44.83 Aligned_cols=6 Identities=33% Similarity=0.761 Sum_probs=2.1
Q ss_pred HHHHHH
Q 024140 68 ELQSQI 73 (272)
Q Consensus 68 ~Lq~r~ 73 (272)
+|++++
T Consensus 644 ~l~~~~ 649 (880)
T PRK03918 644 ELRKEL 649 (880)
T ss_pred HHHHHH
Confidence 333333
No 57
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=92.91 E-value=1.8 Score=41.42 Aligned_cols=30 Identities=13% Similarity=0.118 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 52 HSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 52 ~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~ 81 (272)
...||.+|++-+..|...+.++..++.+|+
T Consensus 206 L~~lk~~l~~~~~ei~~~~~~l~e~~~~l~ 235 (312)
T smart00787 206 LDRAKEKLKKLLQEIMIKVKKLEELEEELQ 235 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444455555555555554444
No 58
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=92.90 E-value=1.3 Score=42.51 Aligned_cols=42 Identities=24% Similarity=0.358 Sum_probs=35.1
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 40 A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~ 81 (272)
.+.+++..+|.+...|+....++.-.+.+|+.++..++..+.
T Consensus 258 ~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~ 299 (444)
T TIGR03017 258 NLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLN 299 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Confidence 567888888999999888888888888888888888888775
No 59
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=92.87 E-value=1.9 Score=33.40 Aligned_cols=35 Identities=20% Similarity=0.402 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 024140 82 DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (272)
Q Consensus 82 ~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE 116 (272)
..+....++++.|....+.|...|..|+..|.+|.
T Consensus 35 ~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rLs 69 (70)
T PF04899_consen 35 HMFEQTSQENAALSEQVNNLSQQVQRLSEQLERLS 69 (70)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34458888888999999999999999999998874
No 60
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=92.82 E-value=2.5 Score=37.85 Aligned_cols=66 Identities=26% Similarity=0.369 Sum_probs=40.2
Q ss_pred hhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 024140 47 DLESEHSALRSQLAEK-------DSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (272)
Q Consensus 47 ~LE~E~~~LR~~L~EK-------d~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE 116 (272)
++-.+..+|..++.++ +.+|.+|+.++..|+.+.+ .....++...+|...|..-+.+++.++...|
T Consensus 107 ~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~----~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e 179 (190)
T PF05266_consen 107 KLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAA----KLKEKKEAKDKEISRLKSEAEALKEEIENAE 179 (190)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666665 7777777777777776654 3333333444666666666666666666654
No 61
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=92.72 E-value=6.6 Score=34.59 Aligned_cols=101 Identities=21% Similarity=0.268 Sum_probs=56.6
Q ss_pred CCchhhHHHHHHHHHHHHH---HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 024140 24 SDPFEQLDVARKITSIAIS---TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS----DKLGQAQADKERLSK 96 (272)
Q Consensus 24 ~DP~EQLdlarkIts~A~a---tRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~----~rL~~a~ee~~kL~~ 96 (272)
.||..-|+.+++=...+|. .-|...-+....|..++.+-.+.+.++++++. .+|. +.-+.+..++..+..
T Consensus 22 EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~---~Al~~g~edLAr~al~~k~~~e~ 98 (221)
T PF04012_consen 22 EDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAE---LALAAGREDLAREALQRKADLEE 98 (221)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHcCCHHHHHHHHHHHHHHHH
Confidence 3777777777665533332 23333344444555555555555555555443 3344 444566677777777
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 024140 97 ENEALTNTVRKLQRDVSKLEVFRKTLVQSLK 127 (272)
Q Consensus 97 E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq 127 (272)
+...|..++..+...|.+|+..-+.|-..|.
T Consensus 99 ~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~ 129 (221)
T PF04012_consen 99 QAERLEQQLDQAEAQVEKLKEQLEELEAKLE 129 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777766666666666666655555444443
No 62
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=92.70 E-value=1.7 Score=40.10 Aligned_cols=41 Identities=12% Similarity=0.115 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-ccccccC
Q 024140 92 ERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQS-LKDDEDA 132 (272)
Q Consensus 92 ~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqS-Lq~d~~~ 132 (272)
.++..|++...+.+.+|..++.+|+.+=-.+..+ |+.+...
T Consensus 70 kqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e~lgl~~Lp 111 (230)
T PF10146_consen 70 KQAESERNKRQEKIQRLYEEYKPLKDEINELRKEYLGLEPLP 111 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 3445677777788888888888888887777777 7666553
No 63
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=92.67 E-value=3 Score=39.52 Aligned_cols=89 Identities=18% Similarity=0.336 Sum_probs=48.4
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------H-------HHHHHHHHHHHHHHHHH
Q 024140 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS--------------D-------KLGQAQADKERLSKENE 99 (272)
Q Consensus 41 ~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~--------------~-------rL~~a~ee~~kL~~E~~ 99 (272)
+..++..|+.+...|...+..=+..+.+|.++...|+.++. . .|.....+++.+.++..
T Consensus 154 L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~ 233 (325)
T PF08317_consen 154 LEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELA 233 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555655555555555555555555555443 2 22223333333344444
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 024140 100 ALTNTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (272)
Q Consensus 100 ~La~TvKkL~rDvaKLE~FKk~LmqSLq~d 129 (272)
.|...+..|+.++..++.-|..+..-|++-
T Consensus 234 el~~el~~l~~~i~~~~~~k~~l~~eI~e~ 263 (325)
T PF08317_consen 234 ELQEELEELEEKIEELEEQKQELLAEIAEA 263 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666767676666666553
No 64
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=92.63 E-value=0.65 Score=51.89 Aligned_cols=79 Identities=25% Similarity=0.326 Sum_probs=51.0
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHH----------HHHHHHHHH-------HHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 024140 38 SIAISTRVSDLESEHSALRSQLA----------EKDSRIAEL-------QSQIESIYSSLS---DKLGQAQADKERLSKE 97 (272)
Q Consensus 38 s~A~atRVs~LE~E~~~LR~~L~----------EKd~~i~~L-------q~r~s~le~~l~---~rL~~a~ee~~kL~~E 97 (272)
--||.+++..||..+...|..|. +-+..+++| .+++..+|..|. .-+..+..+.+-|++|
T Consensus 1196 ~gay~s~f~~me~kl~~ir~il~~~svs~~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~ 1275 (1758)
T KOG0994|consen 1196 LGAYASRFLDMEEKLEEIRAILSAPSVSAEDIAQLASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQRE 1275 (1758)
T ss_pred chhhHhHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHH
Confidence 45889999999988888887772 122222222 233333333332 2233444566788999
Q ss_pred HHHHHHHHHHHhhhHHHHH
Q 024140 98 NEALTNTVRKLQRDVSKLE 116 (272)
Q Consensus 98 ~~~La~TvKkL~rDvaKLE 116 (272)
.+.|.+++|.|...+.||+
T Consensus 1276 ~~~l~~~~keL~e~~~~ik 1294 (1758)
T KOG0994|consen 1276 FNGLLTTYKELREQLEKIK 1294 (1758)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 9999999999998888875
No 65
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=92.61 E-value=5.2 Score=33.63 Aligned_cols=74 Identities=24% Similarity=0.386 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhhHHHHHHHHHHHHhhccc
Q 024140 52 HSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEAL---TNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (272)
Q Consensus 52 ~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~L---a~TvKkL~rDvaKLE~FKk~LmqSLq~ 128 (272)
+.+|-..|.-++-++..|+.++..|+.+=. .+.++..+|.++++.+ ...+.+|.+++..|+.==.++++=|++
T Consensus 18 ve~L~s~lr~~E~E~~~l~~el~~l~~~r~----~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGE 93 (120)
T PF12325_consen 18 VERLQSQLRRLEGELASLQEELARLEAERD----ELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGE 93 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345555555566666667777776666544 6667777777777544 455666666666666655556655554
Q ss_pred c
Q 024140 129 D 129 (272)
Q Consensus 129 d 129 (272)
-
T Consensus 94 K 94 (120)
T PF12325_consen 94 K 94 (120)
T ss_pred h
Confidence 3
No 66
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=92.60 E-value=0.99 Score=41.21 Aligned_cols=80 Identities=13% Similarity=0.172 Sum_probs=59.7
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 024140 39 IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVF 118 (272)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~F 118 (272)
-+.+++...||+++.+++++.+.+.+.|+-.+ .-. ....++++.|.++.++|....+-|.-+|+|++-=
T Consensus 77 ~~~ks~~qeLe~~L~~~~qk~~tl~e~~en~K-------~~~----e~tEer~~el~kklnslkk~~e~lr~el~k~~e~ 145 (203)
T KOG3433|consen 77 CDRKSVLQELESQLATGSQKKATLGESIENRK-------AGR----EETEERTDELTKKLNSLKKILESLRWELAKIQET 145 (203)
T ss_pred HHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHH-------hhh----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 46788899999999999999888877665443 111 2455666799999999999999999999998765
Q ss_pred HHHHHhhcccc
Q 024140 119 RKTLVQSLKDD 129 (272)
Q Consensus 119 Kk~LmqSLq~d 129 (272)
+-++..-+..+
T Consensus 146 dpqv~~k~~~~ 156 (203)
T KOG3433|consen 146 DPQVFEKKVHL 156 (203)
T ss_pred CHHHHHHHHHH
Confidence 55554444443
No 67
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=92.58 E-value=2.6 Score=37.78 Aligned_cols=86 Identities=21% Similarity=0.291 Sum_probs=61.4
Q ss_pred HHHHHhhhhhHHHHHHHHHHHH--HHHHHH-HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 024140 39 IAISTRVSDLESEHSALRSQLA--EKDSRI-AELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (272)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~L~--EKd~~i-~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDv 112 (272)
.-+.-=+.+++.|+..|+.+|. +||... ..++.|+..++..|. ---....++..+|.+||+.|-.+....-.||
T Consensus 58 ~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~ev 137 (201)
T PF13851_consen 58 KRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEV 137 (201)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556788999999999998 566543 344555555555554 2223677888999999999999998888888
Q ss_pred HHHHHHHHHHHh
Q 024140 113 SKLEVFRKTLVQ 124 (272)
Q Consensus 113 aKLE~FKk~Lmq 124 (272)
..==.||-.|++
T Consensus 138 qQk~~~kn~lLE 149 (201)
T PF13851_consen 138 QQKTGLKNLLLE 149 (201)
T ss_pred HHHHHHHHHHHH
Confidence 876677666653
No 68
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=92.55 E-value=1.7 Score=46.57 Aligned_cols=91 Identities=20% Similarity=0.315 Sum_probs=61.5
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH------------HHHHH
Q 024140 35 KITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERL------------SKENE 99 (272)
Q Consensus 35 kIts~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL------------~~E~~ 99 (272)
|++.-||++- -+-|+|+..||++|..--..-..+++||+.||.+|. -.|+.+.+|+++. .+.+.
T Consensus 10 kvaeeav~gw-ekae~e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree~eq~i~~~~~~~s~e~e~~~~ 88 (769)
T PF05911_consen 10 KVAEEAVSGW-EKAEAEAASLKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREEQEQKIHEAVAKKSKEWEKIKS 88 (769)
T ss_pred HHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHH
Confidence 5666677654 367899999999999888888899999999999998 6777777776443 23344
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 024140 100 ALTNTVRKLQRDVSKLEVFRKTLVQSL 126 (272)
Q Consensus 100 ~La~TvKkL~rDvaKLE~FKk~LmqSL 126 (272)
.|...+-.+++.++++.+=-.+|-.+|
T Consensus 89 ~le~~l~e~~~~l~~~~~e~~~l~~~l 115 (769)
T PF05911_consen 89 ELEAKLAELSKRLAESAAENSALSKAL 115 (769)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 555555555555555444333333333
No 69
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=92.53 E-value=2.2 Score=37.88 Aligned_cols=30 Identities=23% Similarity=0.436 Sum_probs=17.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 47 DLESEHSALRSQLAEKDSRIAELQSQIESI 76 (272)
Q Consensus 47 ~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~l 76 (272)
.++.++..|..++.+....|.+|++++..+
T Consensus 66 ~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~ 95 (188)
T PF03962_consen 66 KRQNKLEKLQKEIEELEKKIEELEEKIEEA 95 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666666666665554
No 70
>PRK02224 chromosome segregation protein; Provisional
Probab=92.53 E-value=2.6 Score=44.07 Aligned_cols=14 Identities=14% Similarity=0.375 Sum_probs=6.7
Q ss_pred CCchhhHHHHHHHH
Q 024140 24 SDPFEQLDVARKIT 37 (272)
Q Consensus 24 ~DP~EQLdlarkIt 37 (272)
.+|-+-.++-.+|.
T Consensus 146 ~~p~~R~~ii~~l~ 159 (880)
T PRK02224 146 ATPSDRQDMIDDLL 159 (880)
T ss_pred CCHHHHHHHHHHHh
Confidence 34444444444444
No 71
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=92.53 E-value=1.2 Score=45.22 Aligned_cols=71 Identities=21% Similarity=0.297 Sum_probs=38.2
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhh
Q 024140 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLG----QAQADKERLSKENEALTNTVRKLQR 110 (272)
Q Consensus 40 A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~----~a~ee~~kL~~E~~~La~TvKkL~r 110 (272)
-|..+|.+|+.|+..|..+=..=.+++..|++|-..++..++.+|. +..+++.+|++|+..|...+-.|++
T Consensus 63 Tlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~ 137 (472)
T TIGR03752 63 TLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQR 137 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666555544445566777777777777763332 2333444444444444444444433
No 72
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=92.32 E-value=2.4 Score=45.58 Aligned_cols=73 Identities=22% Similarity=0.292 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 024140 52 HSALRSQLAEKDSRIAELQSQIE-----------SIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (272)
Q Consensus 52 ~~~LR~~L~EKd~~i~~Lq~r~s-----------~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (272)
+.+|+.++.|+...++.+..|.. +.+.-|+ ..+-+++|+++.|..|-+.+.+++-.++++-.||-+
T Consensus 165 ~~kl~~~~qe~naeL~rarqreemneeh~~rlsdtvdErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~ 244 (916)
T KOG0249|consen 165 TRKLEEQLEELNAELQRARQREKMNEEHNKRLSDTVDERLQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRT 244 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55666666666666666555443 1222233 456688999999999999999999999999888888
Q ss_pred HHHHHHh
Q 024140 118 FRKTLVQ 124 (272)
Q Consensus 118 FKk~Lmq 124 (272)
|+-.|.+
T Consensus 245 d~E~Lr~ 251 (916)
T KOG0249|consen 245 DIEDLRG 251 (916)
T ss_pred hHHHHHH
Confidence 8766654
No 73
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=92.30 E-value=3.7 Score=36.01 Aligned_cols=93 Identities=16% Similarity=0.204 Sum_probs=61.0
Q ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 28 EQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRK 107 (272)
Q Consensus 28 EQLdlarkIts~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKk 107 (272)
|-||.+..-.. +....+-.|..+...|..+...+.+.-...+.++..+|..+...-+.....+..|+.++..|...+|.
T Consensus 36 E~Le~~~~~n~-~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~ 114 (158)
T PF09744_consen 36 ELLESLASRNQ-EHEVELELLREDNEQLETQYEREKELRKQAEEELLELEDQWRQERKDLQSQVEQLEEENRQLELKLKN 114 (158)
T ss_pred HHHHHHHHhhh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 66665544333 44555556666666666666555555556666777777777756667777788888888888888877
Q ss_pred HhhhHHHHHHHHHH
Q 024140 108 LQRDVSKLEVFRKT 121 (272)
Q Consensus 108 L~rDvaKLE~FKk~ 121 (272)
+.-.+.+|+.=...
T Consensus 115 ~~~q~~rlee~e~~ 128 (158)
T PF09744_consen 115 LSDQSSRLEEREAE 128 (158)
T ss_pred hhhhccccchhHHH
Confidence 77777777643333
No 74
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=92.23 E-value=5 Score=34.39 Aligned_cols=38 Identities=26% Similarity=0.469 Sum_probs=14.5
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (272)
Q Consensus 43 tRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l 80 (272)
.++..++.++..++....+-.......++++..++..+
T Consensus 102 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 139 (191)
T PF04156_consen 102 ERIQELESELEKLKEDLQELRELLKSVEERLDSLDESI 139 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33333344443333333333333333333333333333
No 75
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.18 E-value=2 Score=44.68 Aligned_cols=41 Identities=20% Similarity=0.423 Sum_probs=21.8
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (272)
Q Consensus 40 A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l 80 (272)
++.+|...+|..+..|...+.+|+.+|..|+.....|-..+
T Consensus 284 ~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~I 324 (581)
T KOG0995|consen 284 QMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQI 324 (581)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555554443
No 76
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=92.14 E-value=2.6 Score=43.61 Aligned_cols=39 Identities=13% Similarity=0.337 Sum_probs=16.3
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 43 tRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~ 81 (272)
.++...+.|...|.+....=......|++++..|+.+|.
T Consensus 143 ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~ 181 (546)
T PF07888_consen 143 NQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELE 181 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444333433333333333444444444444443
No 77
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=92.06 E-value=3.2 Score=39.72 Aligned_cols=77 Identities=16% Similarity=0.270 Sum_probs=35.1
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 024140 41 ISTRVSDLESEHSALRSQLAEKDS----RIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (272)
Q Consensus 41 ~atRVs~LE~E~~~LR~~L~EKd~----~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE 116 (272)
+..|...|+.|+..||+.-.|.+. ....+++++..+..++ ....++-..+..++..|+.++..++
T Consensus 177 l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei-----------~~~~~~l~e~~~~l~~l~~~I~~~~ 245 (312)
T smart00787 177 LRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEI-----------MIKVKKLEELEEELQELESKIEDLT 245 (312)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555544322 4444444444444433 3344444444444444444444444
Q ss_pred HHHHHHHhhccc
Q 024140 117 VFRKTLVQSLKD 128 (272)
Q Consensus 117 ~FKk~LmqSLq~ 128 (272)
.-|..+...|++
T Consensus 246 ~~k~e~~~~I~~ 257 (312)
T smart00787 246 NKKSELNTEIAE 257 (312)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 78
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=91.97 E-value=1.8 Score=37.53 Aligned_cols=33 Identities=30% Similarity=0.519 Sum_probs=30.5
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQ 72 (272)
Q Consensus 40 A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r 72 (272)
+...++..++.|...|+.+|.+.+..|.+|+..
T Consensus 17 ~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~ 49 (155)
T PF06810_consen 17 APKAKVDKVKEERDNLKTQLKEADKQIKDLKKS 49 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 578999999999999999999999999999874
No 79
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=91.81 E-value=4.8 Score=41.38 Aligned_cols=68 Identities=22% Similarity=0.259 Sum_probs=42.7
Q ss_pred ChhHHHhcCCCCchhhHHHHHHH---------HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 14 LPEEVLQVLPSDPFEQLDVARKI---------TSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 14 lp~eil~vLP~DP~EQLdlarkI---------ts~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~ 81 (272)
|-+.|-.+|==+.+++|.-=-.+ ....+..++..||.++..+..++.+..+.+..++.++..++..+.
T Consensus 171 l~~Ai~~LlGl~~~~~L~~dl~~~~~~~~~~~~~~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~ 247 (650)
T TIGR03185 171 LKEAIEVLLGLDLIDRLAGDLTNVLRRRKKSELPSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLE 247 (650)
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666677776421111 133555677778888777777777777777777666666666554
No 80
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=91.72 E-value=6.9 Score=36.48 Aligned_cols=43 Identities=19% Similarity=0.305 Sum_probs=24.8
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 38 SIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (272)
Q Consensus 38 s~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l 80 (272)
...+..++..|+.++..++.++..-.+.+..++.++..++..+
T Consensus 139 ~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~ 181 (423)
T TIGR01843 139 KSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEEL 181 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666666666655555555555555444444
No 81
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=91.71 E-value=0.31 Score=44.49 Aligned_cols=35 Identities=31% Similarity=0.473 Sum_probs=32.4
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIE 74 (272)
Q Consensus 40 A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s 74 (272)
-|.+.+.++|.||..||+-|+-|++|..||..|+-
T Consensus 48 elr~EL~kvEeEI~TLrqVLaAKerH~~ELKRKLG 82 (208)
T KOG4010|consen 48 ELRTELAKVEEEIVTLRQVLAAKERHAAELKRKLG 82 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 68889999999999999999999999999998764
No 82
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=91.68 E-value=0.94 Score=47.74 Aligned_cols=56 Identities=32% Similarity=0.452 Sum_probs=39.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 47 DLESEHSALRSQLAEKDSRIAELQSQIESIYS---SLSDKLGQAQADKERLSKENEALT 102 (272)
Q Consensus 47 ~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~---~l~~rL~~a~ee~~kL~~E~~~La 102 (272)
+||+|+.+||..|.-....-.||+.+++.|+. .+..-|.+..++|+.|+.....|.
T Consensus 422 rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~ 480 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLV 480 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999888888999988766654 333445566666666655444443
No 83
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=91.62 E-value=4.7 Score=30.50 Aligned_cols=84 Identities=21% Similarity=0.342 Sum_probs=56.0
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 024140 38 SIAISTRVSDLESEHSALRSQLAEKD-----SRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (272)
Q Consensus 38 s~A~atRVs~LE~E~~~LR~~L~EKd-----~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDv 112 (272)
-..+..++..|+.+...+...+.... ..+...+.-+..|+..+ .....+...+.++...+-..+....+++
T Consensus 14 ~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i----~~~~~~~~~~~~~~~~~r~~l~~a~~~~ 89 (123)
T PF02050_consen 14 LQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAI----QQQQQELERLEQEVEQAREELQEARRER 89 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777777777666666 55555555555555444 4777788888888888888889999999
Q ss_pred HHHHHHHHHHHhh
Q 024140 113 SKLEVFRKTLVQS 125 (272)
Q Consensus 113 aKLE~FKk~LmqS 125 (272)
.+||.++-.-...
T Consensus 90 k~~e~L~e~~~~~ 102 (123)
T PF02050_consen 90 KKLEKLKERRREE 102 (123)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9998887654443
No 84
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=91.55 E-value=0.98 Score=35.76 Aligned_cols=40 Identities=28% Similarity=0.457 Sum_probs=32.4
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024140 72 QIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRD 111 (272)
Q Consensus 72 r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rD 111 (272)
++-.|+..|. +|.....+++.||..||.-|..-|..|.+.
T Consensus 24 ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~ 66 (80)
T PF10224_consen 24 EILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMSS 66 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555555 788899999999999999999999988654
No 85
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=91.47 E-value=2.1 Score=41.82 Aligned_cols=41 Identities=20% Similarity=0.343 Sum_probs=28.1
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (272)
Q Consensus 40 A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l 80 (272)
.+..++..||.|+..|+....++.-.+.+|++++..++..+
T Consensus 251 ~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l 291 (498)
T TIGR03007 251 ELDGRIEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQK 291 (498)
T ss_pred chHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHH
Confidence 44566777777777777777666666666666666666654
No 86
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=91.45 E-value=3.6 Score=31.78 Aligned_cols=57 Identities=19% Similarity=0.251 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 48 LESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKL 108 (272)
Q Consensus 48 LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL 108 (272)
||..|..+=..++-=...|.+|+++...|..+-. ...++|.+|..|+......++.|
T Consensus 9 LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~----~L~~en~~L~~e~~~~~~rl~~L 65 (72)
T PF06005_consen 9 LEEKIQQAVETIALLQMENEELKEKNNELKEENE----ELKEENEQLKQERNAWQERLRSL 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333334444444444433322 44455555555555555555444
No 87
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=91.34 E-value=8.2 Score=35.68 Aligned_cols=20 Identities=20% Similarity=0.433 Sum_probs=9.1
Q ss_pred HHHHHHHHH---HHHHHHHHHHH
Q 024140 61 EKDSRIAEL---QSQIESIYSSL 80 (272)
Q Consensus 61 EKd~~i~~L---q~r~s~le~~l 80 (272)
||.+|..+| ..-++.||..+
T Consensus 47 Er~~h~eeLrqI~~DIn~lE~iI 69 (230)
T PF10146_consen 47 ERMAHVEELRQINQDINTLENII 69 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444 33444444444
No 88
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=91.34 E-value=2.6 Score=49.23 Aligned_cols=89 Identities=20% Similarity=0.363 Sum_probs=72.7
Q ss_pred hhHHHHHHHHH-----HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 024140 28 EQLDVARKITS-----IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENE 99 (272)
Q Consensus 28 EQLdlarkIts-----~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~ 99 (272)
|.++++-+|.. -++...=.+||.+|..|...|+|......-..+|+..+...+. .-|..-.+.+.+|...|.
T Consensus 1696 e~~E~~e~i~~~~~~~s~l~~~KrklE~~i~~l~~elee~~~~~~~~~Er~kka~~~a~~~~~el~~Eq~~~~~le~~k~ 1775 (1930)
T KOG0161|consen 1696 ELEELAERVNELNAQNSSLTAEKRKLEAEIAQLQSELEEEQSELRAAEERAKKAQADAAKLAEELRKEQETSQKLERLKK 1775 (1930)
T ss_pred HHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 44455555553 4566677789999999999999999999999999998888776 788888999999999999
Q ss_pred HHHHHHHHHhhhHHHHH
Q 024140 100 ALTNTVRKLQRDVSKLE 116 (272)
Q Consensus 100 ~La~TvKkL~rDvaKLE 116 (272)
+|..+||.|.-.+..+|
T Consensus 1776 ~LE~~~kdLq~rL~e~E 1792 (1930)
T KOG0161|consen 1776 SLERQVKDLQLRLDEAE 1792 (1930)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999998876555544
No 89
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=91.21 E-value=8.4 Score=34.94 Aligned_cols=40 Identities=15% Similarity=0.292 Sum_probs=19.1
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 42 atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~ 81 (272)
-.|+.++..|...|.+.+..-.+.+..|+.+...++..+.
T Consensus 41 Q~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~ 80 (251)
T PF11932_consen 41 QKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVA 80 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555554444444444444444444444433
No 90
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=91.18 E-value=2.4 Score=42.27 Aligned_cols=78 Identities=18% Similarity=0.276 Sum_probs=51.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHH
Q 024140 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL---------------------SDKLGQAQADKERLSKEN 98 (272)
Q Consensus 40 A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l---------------------~~rL~~a~ee~~kL~~E~ 98 (272)
+...+|..|+.++..|+.++++-+..+..++.++.-|+.-- .+-+....++..+|..+.
T Consensus 68 ~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (525)
T TIGR02231 68 PDPERLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTED 147 (525)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457777888888888877777777777777665555432 022223344566777777
Q ss_pred HHHHHHHHHHhhhHHHHHH
Q 024140 99 EALTNTVRKLQRDVSKLEV 117 (272)
Q Consensus 99 ~~La~TvKkL~rDvaKLE~ 117 (272)
..|...+++|++.+++|+.
T Consensus 148 ~~~~~~~~~~~~~l~~l~~ 166 (525)
T TIGR02231 148 REAERRIRELEKQLSELQN 166 (525)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777744
No 91
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=91.17 E-value=5.6 Score=34.23 Aligned_cols=80 Identities=21% Similarity=0.351 Sum_probs=62.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 024140 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (272)
Q Consensus 46 s~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~L 122 (272)
-+|.-|...|..++.||...+..|+.++..-=..|. .+|.....++..+..+.......+.++..++.+++.=+..+
T Consensus 45 eqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~ 124 (177)
T PF13870_consen 45 EQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKL 124 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778889999999999999999988876555555 88888888888888888888888888888877776554444
Q ss_pred Hhh
Q 024140 123 VQS 125 (272)
Q Consensus 123 mqS 125 (272)
-..
T Consensus 125 ~~~ 127 (177)
T PF13870_consen 125 RKQ 127 (177)
T ss_pred HHH
Confidence 433
No 92
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=91.16 E-value=1.8 Score=44.75 Aligned_cols=30 Identities=13% Similarity=0.246 Sum_probs=21.5
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHhhcccccc
Q 024140 102 TNTVRKLQRDVSKLEVFRKTLVQSLKDDED 131 (272)
Q Consensus 102 a~TvKkL~rDvaKLE~FKk~LmqSLq~d~~ 131 (272)
......|+|++.-.+..=..|++.+++-.-
T Consensus 375 ~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~~ 404 (754)
T TIGR01005 375 QVDLDALQRDAAAKRQLYESYLTNYRQAAS 404 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555667778887777777778887776544
No 93
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=91.15 E-value=8.8 Score=34.81 Aligned_cols=53 Identities=13% Similarity=0.126 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 28 EQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 28 EQLdlarkIts~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~ 81 (272)
.+++-+.+.....+..+. ....++..+-++-.+-.+.|..|++++..|+....
T Consensus 21 ~~~~~~~~~~~~~~~~~~-~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~ 73 (251)
T PF11932_consen 21 ATLDQAQQVQQQWVQAAQ-QSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNE 73 (251)
T ss_pred ccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555544444442 23335555555555555555555555555555443
No 94
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.13 E-value=2.4 Score=44.82 Aligned_cols=65 Identities=18% Similarity=0.263 Sum_probs=38.4
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 38 SIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVR 106 (272)
Q Consensus 38 s~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvK 106 (272)
..++..||..|..+...-.++|.+-.+.+..|+++...|. +|+.++.+.+++|.+.-+.+.+.+.
T Consensus 560 r~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~La----eR~e~a~d~Qe~L~~R~~~vl~~l~ 624 (717)
T PF10168_consen 560 REEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLA----ERYEEAKDKQEKLMKRVDRVLQLLN 624 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566667766666666655555555555555555544444 5556666666666665555544443
No 95
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=91.07 E-value=6.9 Score=31.40 Aligned_cols=35 Identities=23% Similarity=0.433 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 024140 88 QADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (272)
Q Consensus 88 ~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~L 122 (272)
..++.+|..+...|..-+.+|...|.++..|+.-|
T Consensus 80 ~~ei~~l~~~l~~l~~~~~k~e~~l~~~~~Y~~fL 114 (126)
T PF13863_consen 80 EAEIKKLKAELEELKSEISKLEEKLEEYKKYEEFL 114 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444333
No 96
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=91.05 E-value=8.5 Score=39.26 Aligned_cols=74 Identities=24% Similarity=0.394 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHhhh---------HHHH
Q 024140 53 SALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTV--------RKLQRD---------VSKL 115 (272)
Q Consensus 53 ~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~Tv--------KkL~rD---------vaKL 115 (272)
..+++.+.+-.....+|+.++.........++....+-..+|..+-.+|++.+ ...|+. =.+|
T Consensus 70 ~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~LA~~ile~k~~~f~~~~~~~l~~ll~Pl~e~l 149 (475)
T PRK10361 70 RSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFENLANRIFEHSNRRVDEQNRQSLNSLLSPLREQL 149 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 33333333333333333333333333333566666666667777777777643 112221 1357
Q ss_pred HHHHHHHHhhc
Q 024140 116 EVFRKTLVQSL 126 (272)
Q Consensus 116 E~FKk~LmqSL 126 (272)
+.|++.|-+.-
T Consensus 150 ~~f~~~v~~~~ 160 (475)
T PRK10361 150 DGFRRQVQDSF 160 (475)
T ss_pred HHHHHHHHHHH
Confidence 78888776543
No 97
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=90.95 E-value=3.4 Score=39.93 Aligned_cols=90 Identities=24% Similarity=0.356 Sum_probs=52.1
Q ss_pred chhhHHHHHHHHHHHHHH---hhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q 024140 26 PFEQLDVARKITSIAIST---RVSDLESEHSALRSQLAEK-DSRIAELQSQIESIYSSLSDKLGQAQADKERLSKE---- 97 (272)
Q Consensus 26 P~EQLdlarkIts~A~at---RVs~LE~E~~~LR~~L~EK-d~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E---- 97 (272)
|..|=+|++|=...-++- |+..=|.||..||.||+-. +.-|+|= --..|++|. ||+|+.|+.+|..-
T Consensus 62 PLQQKEV~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEE---CHRVEAQLA--LKEARkEIkQLkQvieTm 136 (305)
T PF15290_consen 62 PLQQKEVCIRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEE---CHRVEAQLA--LKEARKEIKQLKQVIETM 136 (305)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 567888888765444443 3333355666666666632 2233222 222345553 78999999888764
Q ss_pred HHHHHHHHH-------HHhhhHHHHHHHHH
Q 024140 98 NEALTNTVR-------KLQRDVSKLEVFRK 120 (272)
Q Consensus 98 ~~~La~TvK-------kL~rDvaKLE~FKk 120 (272)
|++|+..=| ..|-+--|||+|=+
T Consensus 137 rssL~ekDkGiQKYFvDINiQN~KLEsLLq 166 (305)
T PF15290_consen 137 RSSLAEKDKGIQKYFVDINIQNKKLESLLQ 166 (305)
T ss_pred HhhhchhhhhHHHHHhhhhhhHhHHHHHHH
Confidence 455555433 34445678998844
No 98
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=90.93 E-value=3.9 Score=37.71 Aligned_cols=78 Identities=22% Similarity=0.400 Sum_probs=46.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH-------HHHHHHHHHHHHHHHh
Q 024140 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKER-------LSKENEALTNTVRKLQ 109 (272)
Q Consensus 40 A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~k-------L~~E~~~La~TvKkL~ 109 (272)
-|--|+..+|.|....+..|.+..+.|..|+++...++.+-. .+...+.+++.+ ..+|+..|+.-+..+.
T Consensus 9 Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~ 88 (246)
T PF00769_consen 9 ELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAE 88 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888999988888888888888888777766555433 333334444433 3456666666666666
Q ss_pred hhHHHHHH
Q 024140 110 RDVSKLEV 117 (272)
Q Consensus 110 rDvaKLE~ 117 (272)
..+++|+.
T Consensus 89 ~~i~~l~e 96 (246)
T PF00769_consen 89 AEIARLEE 96 (246)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666544
No 99
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=90.82 E-value=1.4 Score=41.94 Aligned_cols=57 Identities=28% Similarity=0.442 Sum_probs=41.8
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTN 103 (272)
Q Consensus 43 tRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~ 103 (272)
.++..+|.++...+.+|.++...+.+|++++..|+.++. .+..++.+|+.+......
T Consensus 221 ~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~----~~~~e~~~l~~~~~~~~~ 277 (344)
T PF12777_consen 221 QKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYE----EAQKEKQELEEEIEETER 277 (344)
T ss_dssp HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHh
Confidence 567777888888888888888888888888888887776 556666666655544433
No 100
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=90.81 E-value=4.4 Score=42.24 Aligned_cols=93 Identities=16% Similarity=0.299 Sum_probs=58.4
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH---------
Q 024140 39 IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVR--------- 106 (272)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvK--------- 106 (272)
++..+|...|+...++|+..+..=..-+.++..+-..++..|. .-+....+++++|+++++.|-+.|.
T Consensus 255 ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dv 334 (581)
T KOG0995|consen 255 EKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDV 334 (581)
T ss_pred hcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 3445555556555555555554444444444444444444443 3345888999999999999988875
Q ss_pred --------HHhhhHHHHHHHHHHHHhhcccccc
Q 024140 107 --------KLQRDVSKLEVFRKTLVQSLKDDED 131 (272)
Q Consensus 107 --------kL~rDvaKLE~FKk~LmqSLq~d~~ 131 (272)
+|.|+|.+++.=+-.|++.+-+-+.
T Consensus 335 e~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l 367 (581)
T KOG0995|consen 335 ERMNLERNKLKRELNKIQSELDRLSKEVWELKL 367 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 4667777776666667776665554
No 101
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=90.77 E-value=2.7 Score=44.12 Aligned_cols=98 Identities=22% Similarity=0.260 Sum_probs=59.7
Q ss_pred hHHHHHHHHHHHH--------HHhhhhhHHHHHHHHHHHHHH------H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 29 QLDVARKITSIAI--------STRVSDLESEHSALRSQLAEK------D--SRIAELQSQIESIYSSLSDKLGQAQADKE 92 (272)
Q Consensus 29 QLdlarkIts~A~--------atRVs~LE~E~~~LR~~L~EK------d--~~i~~Lq~r~s~le~~l~~rL~~a~ee~~ 92 (272)
+.+++.|+.-.-+ -+|+-.||.|++.||.+++.- + ..|+.+...+...|..++--.........
T Consensus 227 dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~ 306 (629)
T KOG0963|consen 227 DEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEA 306 (629)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3456666653222 258888999999999988631 1 23445555555555555433334445556
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 024140 93 RLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSL 126 (272)
Q Consensus 93 kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSL 126 (272)
-|++|+....++|.+|++.+.....-...|-.-|
T Consensus 307 S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL 340 (629)
T KOG0963|consen 307 SLVEEREKHKAQISALEKELKAKISELEELKEKL 340 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888888888887766444444443333
No 102
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=90.76 E-value=2.8 Score=46.40 Aligned_cols=35 Identities=31% Similarity=0.419 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 024140 92 ERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSL 126 (272)
Q Consensus 92 ~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSL 126 (272)
..+..++...++-.+-|++.|.|||..-..|-..+
T Consensus 390 ~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~ 424 (1074)
T KOG0250|consen 390 NELGSELEERENKLEQLKKEVEKLEEQINSLREEL 424 (1074)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666667777777778888877544444433
No 103
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=90.70 E-value=5.5 Score=43.81 Aligned_cols=40 Identities=20% Similarity=0.368 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 024140 85 GQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQ 124 (272)
Q Consensus 85 ~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~Lmq 124 (272)
.....+...|.+....+.+.++.+.+++.++..-...+.+
T Consensus 442 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (1163)
T COG1196 442 EELNEELEELEEQLEELRDRLKELERELAELQEELQRLEK 481 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555566666666666666666666554444443
No 104
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=90.58 E-value=4.9 Score=33.34 Aligned_cols=61 Identities=30% Similarity=0.350 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 024140 48 LESEHSALRSQLA-EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (272)
Q Consensus 48 LE~E~~~LR~~L~-EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDva 113 (272)
|=.|-.+||.+.. =|..+| +=|.+...|...|. ...+..-++..|+++|.-.=..|.+-|+
T Consensus 3 la~eYsKLraQ~~vLKKaVi-eEQ~k~~~L~e~Lk----~ke~~LRk~eqE~dSL~FrN~QL~kRV~ 64 (102)
T PF10205_consen 3 LAQEYSKLRAQNQVLKKAVI-EEQAKNAELKEQLK----EKEQALRKLEQENDSLTFRNQQLTKRVE 64 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666 333333 33455565655554 4444444555555555444444444443
No 105
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=90.43 E-value=3.8 Score=37.40 Aligned_cols=64 Identities=17% Similarity=0.248 Sum_probs=37.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024140 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQ 109 (272)
Q Consensus 46 s~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (272)
..|+.|++.||.-+.+=++....|..+...+|.+-+ +++....++|.+|..|.+-|....+-|+
T Consensus 63 K~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~ 129 (193)
T PF14662_consen 63 KALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELA 129 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHH
Confidence 345566666666666656666666666666666555 5555556666666666655555555553
No 106
>KOG4398 consensus Predicted coiled-coil protein [General function prediction only]
Probab=90.40 E-value=1.8 Score=42.03 Aligned_cols=84 Identities=19% Similarity=0.243 Sum_probs=62.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH----HHH
Q 024140 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDV----SKL 115 (272)
Q Consensus 40 A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDv----aKL 115 (272)
..+.|+.+||.-|..= -.|....++.|.+..+.++.-+ .|+..-.|+.+||+.-|.-|-+-|+|+.-|| .||
T Consensus 2 ~~k~~~~~~~~~i~k~---nee~~~~~~~~~k~~e~~qkl~-sr~~~~~ekke~i~r~n~k~~d~v~~~~~~~~~~~erl 77 (359)
T KOG4398|consen 2 SCKMRIEQLKQTICKG---NEEMEKNSEGLLKTKEKNQKLY-SRAQRHQEKKEKIQRHNRKLGDLVEKKTIDLRSHYERL 77 (359)
T ss_pred chhHHHHHHHHHHhcC---cHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHH
Confidence 3566776666655543 3355566667766666555433 6888999999999999999999999988774 799
Q ss_pred HHHHHHHHhhcc
Q 024140 116 EVFRKTLVQSLK 127 (272)
Q Consensus 116 E~FKk~LmqSLq 127 (272)
++++++-++-|-
T Consensus 78 ~~lr~shi~el~ 89 (359)
T KOG4398|consen 78 ANLRRSHILELT 89 (359)
T ss_pred HHHHHHHHHHHH
Confidence 999999877653
No 107
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=90.37 E-value=2.9 Score=44.76 Aligned_cols=60 Identities=28% Similarity=0.387 Sum_probs=44.1
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 024140 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEAL 101 (272)
Q Consensus 42 atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~L 101 (272)
..++..+.+|...|...|.+|++.|.+|.+.-+..|..+. .||..+.-+|.-|.=|--.|
T Consensus 98 ~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~ 160 (769)
T PF05911_consen 98 SKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVL 160 (769)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566667777788889999999999999999998776 66666666666555544444
No 108
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=90.36 E-value=3.9 Score=43.54 Aligned_cols=91 Identities=20% Similarity=0.275 Sum_probs=61.3
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH
Q 024140 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQI-------ESIYSSLS----------DKLGQAQADKERLSKENEALT 102 (272)
Q Consensus 40 A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~-------s~le~~l~----------~rL~~a~ee~~kL~~E~~~La 102 (272)
.|..||..||.|+..+|..+......+..|...+ ..+|.+.. -|=...++|...|.+||=+|.
T Consensus 31 ~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQ 110 (717)
T PF09730_consen 31 YLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQ 110 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 5788999999999999999886555554443333 33333322 222344677788999999999
Q ss_pred HHHHHHhhhHHHHHHHHHHHHhhcccccc
Q 024140 103 NTVRKLQRDVSKLEVFRKTLVQSLKDDED 131 (272)
Q Consensus 103 ~TvKkL~rDvaKLE~FKk~LmqSLq~d~~ 131 (272)
.+|-.|...=--+|.|| +=+..|.||.+
T Consensus 111 Kqvs~Lk~sQvefE~~K-hei~rl~Ee~~ 138 (717)
T PF09730_consen 111 KQVSVLKQSQVEFEGLK-HEIKRLEEEIE 138 (717)
T ss_pred HHHHHHHHhHHHHHHHH-HHHHHHHHHHH
Confidence 88888877777777774 33455555543
No 109
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=90.31 E-value=2.2 Score=40.34 Aligned_cols=76 Identities=18% Similarity=0.222 Sum_probs=50.5
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 024140 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFR 119 (272)
Q Consensus 40 A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FK 119 (272)
-++.+...+-.|-..|+..|.+++....++|+|+..|+.+.. +..++..+|-.|-..|......|.-.|.-+|.|.
T Consensus 139 e~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s----~LeE~~~~l~~ev~~L~~r~~ELe~~~El~e~~~ 214 (290)
T COG4026 139 ELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENS----RLEEMLKKLPGEVYDLKKRWDELEPGVELPEEEL 214 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhchhHHHHHHHHHHHhcccccchHHHH
Confidence 456667777777888888888888888888888777777665 4445555555555555555555555555555553
No 110
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.27 E-value=3.2 Score=46.05 Aligned_cols=76 Identities=4% Similarity=0.220 Sum_probs=37.1
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024140 40 AISTRVSDLESEHSALRSQLAEK--DSRIAELQSQIESIYSSLS--------DKLGQAQADKERLSKENEALTNTVRKLQ 109 (272)
Q Consensus 40 A~atRVs~LE~E~~~LR~~L~EK--d~~i~~Lq~r~s~le~~l~--------~rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (272)
++...+..++.+...|+..|.-+ ...+.+++.++..|+.++. .-+....++.+.|..++..|..++++|.
T Consensus 1002 ~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~~~~~~~~~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le 1081 (1311)
T TIGR00606 1002 LMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYE 1081 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444445555444 5555556666666665554 2233344444445444444445555555
Q ss_pred hhHHHH
Q 024140 110 RDVSKL 115 (272)
Q Consensus 110 rDvaKL 115 (272)
.+|+.|
T Consensus 1082 ~qi~~l 1087 (1311)
T TIGR00606 1082 KEIKHF 1087 (1311)
T ss_pred HHHHHH
Confidence 544443
No 111
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=90.24 E-value=4.5 Score=44.47 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHH
Q 024140 92 ERLSKENEALTNTVRKLQRDVSKL 115 (272)
Q Consensus 92 ~kL~~E~~~La~TvKkL~rDvaKL 115 (272)
.+|.++-+.|...+.++..++.++
T Consensus 887 ~~l~~~l~~~~~~~~~~~~~~~~~ 910 (1163)
T COG1196 887 EELEEELRELESELAELKEEIEKL 910 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 112
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=90.17 E-value=1.4 Score=46.42 Aligned_cols=56 Identities=29% Similarity=0.477 Sum_probs=42.9
Q ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024140 55 LRSQLA----EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQR 110 (272)
Q Consensus 55 LR~~L~----EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~r 110 (272)
||+||. ||++++..+.+++..+.......|.....+.++|++||.-|.+-+|.+..
T Consensus 2 LRdkL~~Lq~ek~~E~~~l~~~~~~lk~~~~~el~~Lk~~vqkLEDEKKFL~nE~r~~s~ 61 (654)
T PF09798_consen 2 LRDKLELLQQEKQKERQALKSSVEELKESHEEELNKLKSEVQKLEDEKKFLNNELRSLSS 61 (654)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455554 88888888888888888777666777777778888888888887777654
No 113
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=90.06 E-value=16 Score=34.03 Aligned_cols=42 Identities=21% Similarity=0.380 Sum_probs=22.8
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 40 A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~ 81 (272)
.+..+...+++++..|+.++..-...|..++.++..++.++.
T Consensus 134 ~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~ 175 (423)
T TIGR01843 134 LFESRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLE 175 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555555554
No 114
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=90.03 E-value=4.9 Score=33.36 Aligned_cols=74 Identities=23% Similarity=0.372 Sum_probs=63.4
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 024140 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVF 118 (272)
Q Consensus 41 ~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~F 118 (272)
||+=-++|-+.+.-||.-+-|=.....+|++.+-.-|.+|. ...+|+.-|.=.|+.|...|-.|+-++...+..
T Consensus 3 la~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LR----k~eqE~dSL~FrN~QL~kRV~~LQ~El~~~~~~ 76 (102)
T PF10205_consen 3 LAQEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALR----KLEQENDSLTFRNQQLTKRVEVLQEELEESEQK 76 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34556788889999999999888889999999999998776 899999999999999999999999998855443
No 115
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=89.96 E-value=1.7 Score=40.16 Aligned_cols=71 Identities=24% Similarity=0.392 Sum_probs=44.5
Q ss_pred HHHhhhhhHH------HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024140 41 ISTRVSDLES------EHSALRSQLAE---KDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRD 111 (272)
Q Consensus 41 ~atRVs~LE~------E~~~LR~~L~E---Kd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rD 111 (272)
+-.+...+++ +...||.++.. ..+.+..+.+....|+.+++ ....+.+++++.+++|..++..++++
T Consensus 119 ll~~l~~l~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~~kL~~el~----~~~~~Le~~~~~~~al~Kq~e~~~~E 194 (216)
T KOG1962|consen 119 LLRELATLRANEKAMKENEALKKQLENSSKLEEENDKLKADLEKLETELE----KKQKKLEKAQKKVDALKKQSEGLQDE 194 (216)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhhcccchhhhHHHHHhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHcccH
Confidence 4445555555 66666666653 23445555555555555544 66666677777777777788887777
Q ss_pred HHHH
Q 024140 112 VSKL 115 (272)
Q Consensus 112 vaKL 115 (272)
.++|
T Consensus 195 ydrL 198 (216)
T KOG1962|consen 195 YDRL 198 (216)
T ss_pred HHHH
Confidence 7776
No 116
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=89.92 E-value=4.5 Score=32.07 Aligned_cols=52 Identities=19% Similarity=0.271 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 48 LESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTN 103 (272)
Q Consensus 48 LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~ 103 (272)
|=.+-..|+.+|.+|+++|..|..-+.+|...|+ .-.+-+.+|+.+...+..
T Consensus 3 Li~qNk~L~~kL~~K~eEI~rLn~lv~sLR~KLi----KYt~LnkkLq~~~~~~~~ 54 (76)
T PF11544_consen 3 LIKQNKELKKKLNDKQEEIDRLNILVGSLRGKLI----KYTELNKKLQDQLLNLQR 54 (76)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHh
Confidence 4456789999999999999988877777776555 677777777777776654
No 117
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=89.88 E-value=2.7 Score=32.15 Aligned_cols=55 Identities=24% Similarity=0.415 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH----HHHHHH
Q 024140 63 DSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL----EVFRKT 121 (272)
Q Consensus 63 d~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKL----E~FKk~ 121 (272)
+..|..|+.++..+++.+. ....++..|..||+..+..+-....+..+| |++|+.
T Consensus 4 ea~~~~Lr~rLd~~~rk~~----~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 4 EAEIATLRNRLDSLTRKNS----VHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999998887776 778889999999999888888777776665 445554
No 118
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=89.82 E-value=5.3 Score=40.22 Aligned_cols=61 Identities=16% Similarity=0.310 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 024140 51 EHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (272)
Q Consensus 51 E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (272)
++...+.+++++...|.+-+++...|+.+|. ..+.++.++..+....++++++++++++-+
T Consensus 39 ~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk----~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~ 99 (420)
T COG4942 39 QLKQIQKEIAALEKKIREQQDQRAKLEKQLK----SLETEIASLEAQLIETADDLKKLRKQIADL 99 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhHHHHHHhhHHHH
Confidence 3444455555555555555555555554443 444444444444444444444444444433
No 119
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=89.62 E-value=11 Score=38.08 Aligned_cols=76 Identities=22% Similarity=0.311 Sum_probs=47.9
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH---
Q 024140 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKL--- 115 (272)
Q Consensus 42 atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKL--- 115 (272)
.+|++++|.|+..-|..-..-+. ..++.++.++-+.- ++|..-...+.-|.+|+.+|-.+||.|..|...|
T Consensus 219 ksr~~k~eee~aaERerglqtea---qvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~~pN 295 (561)
T KOG1103|consen 219 KSRTKKGEEEAAAERERGLQTEA---QVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQHLRPN 295 (561)
T ss_pred ccccCCChHHHHHHHhhccchHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcc
Confidence 36777787777665553332222 22233333332221 5555666677778899999999999999998876
Q ss_pred HHHHH
Q 024140 116 EVFRK 120 (272)
Q Consensus 116 E~FKk 120 (272)
|.+|+
T Consensus 296 eqLk~ 300 (561)
T KOG1103|consen 296 EQLKG 300 (561)
T ss_pred ccccC
Confidence 45665
No 120
>PRK12704 phosphodiesterase; Provisional
Probab=89.60 E-value=11 Score=38.56 Aligned_cols=13 Identities=8% Similarity=0.388 Sum_probs=7.5
Q ss_pred HHHHHHHhhcccc
Q 024140 117 VFRKTLVQSLKDD 129 (272)
Q Consensus 117 ~FKk~LmqSLq~d 129 (272)
..|+.||..+.++
T Consensus 154 ea~~~l~~~~~~~ 166 (520)
T PRK12704 154 EAKEILLEKVEEE 166 (520)
T ss_pred HHHHHHHHHHHHH
Confidence 3466666666554
No 121
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=89.45 E-value=8.2 Score=42.30 Aligned_cols=42 Identities=29% Similarity=0.460 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-----------HHHHHHHHHhh
Q 024140 84 LGQAQADKERLSKENEALTNTVRKLQRDVSK-----------LEVFRKTLVQS 125 (272)
Q Consensus 84 L~~a~ee~~kL~~E~~~La~TvKkL~rDvaK-----------LE~FKk~LmqS 125 (272)
|..+.+.+.++.++|.+|..+|.++.|.... ||.||+.|...
T Consensus 454 le~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l 506 (980)
T KOG0980|consen 454 LESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALL 506 (980)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3344555566677777777777766665443 55666655443
No 122
>PRK02119 hypothetical protein; Provisional
Probab=89.45 E-value=2.4 Score=32.62 Aligned_cols=15 Identities=13% Similarity=0.284 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHH
Q 024140 66 IAELQSQIESIYSSL 80 (272)
Q Consensus 66 i~~Lq~r~s~le~~l 80 (272)
+..+++|+..||..+
T Consensus 4 ~~~~e~Ri~~LE~rl 18 (73)
T PRK02119 4 QQNLENRIAELEMKI 18 (73)
T ss_pred hHHHHHHHHHHHHHH
Confidence 344555555555443
No 123
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=89.42 E-value=4.4 Score=41.86 Aligned_cols=63 Identities=24% Similarity=0.429 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 024140 50 SEHSALRSQLAEKDSRIAELQSQIESIYSSLS------DKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (272)
Q Consensus 50 ~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~------~rL~~a~ee~~kL~~E~~~La~TvKkL~rDv 112 (272)
.-+.+|+..+.+|+.+|..|+++...|-.++. .....-.+|.++|.+|.+-.--..-+|.+.|
T Consensus 330 g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V 398 (622)
T COG5185 330 GKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSV 398 (622)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 34778888889999999999999999988887 5666677777788877776666666666554
No 124
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=89.30 E-value=6.1 Score=35.19 Aligned_cols=34 Identities=29% Similarity=0.494 Sum_probs=30.2
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQI 73 (272)
Q Consensus 40 A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~ 73 (272)
.|..-+.++|.||..||+-|+-|.++.++|+.|+
T Consensus 33 eLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkL 66 (162)
T PF04201_consen 33 ELRSELAKVEEEIQTLRQVLAAKERHCAELKRKL 66 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3555678899999999999999999999999885
No 125
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=89.25 E-value=12 Score=38.22 Aligned_cols=12 Identities=8% Similarity=0.476 Sum_probs=7.2
Q ss_pred HHHHHHhhcccc
Q 024140 118 FRKTLVQSLKDD 129 (272)
Q Consensus 118 FKk~LmqSLq~d 129 (272)
.|..||..+.++
T Consensus 149 ak~~l~~~~~~~ 160 (514)
T TIGR03319 149 AKEILLEEVEEE 160 (514)
T ss_pred HHHHHHHHHHHH
Confidence 466666666554
No 126
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.14 E-value=7.6 Score=43.25 Aligned_cols=43 Identities=12% Similarity=0.184 Sum_probs=28.0
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 39 IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~ 81 (272)
..|..++..|..++..++..+.+.+..|..|+.++..++..+.
T Consensus 884 ~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 926 (1311)
T TIGR00606 884 QQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKE 926 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 4455566666666666666666666666666666666666664
No 127
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=89.13 E-value=18 Score=33.36 Aligned_cols=83 Identities=14% Similarity=0.257 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H-----------HHHHHHHHHHHHHHHHHHHHHH----HHHH
Q 024140 48 LESEHSALRSQLAEKDSRIAELQSQIESIYSSLS----D-----------KLGQAQADKERLSKENEALTNT----VRKL 108 (272)
Q Consensus 48 LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~----~-----------rL~~a~ee~~kL~~E~~~La~T----vKkL 108 (272)
+..++..+..+++..+..+.++++++..+...++ + +-+.+.+....++.|.+.|.++ +..|
T Consensus 133 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~E~~g~~~tg~~G~Gp~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l 212 (301)
T PF14362_consen 133 FDAQIARLDAEIAALQAEIDQLEKEIDRAQQEAQCEIFGTGGTGVPGKGPRYKEKRAQLDAAQAELDTLQAQIDAAIAAL 212 (301)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3445666666666666666666666666665555 1 2344444444444444444444 4444
Q ss_pred h----hhHHHHHHHHHHHHhhccccc
Q 024140 109 Q----RDVSKLEVFRKTLVQSLKDDE 130 (272)
Q Consensus 109 ~----rDvaKLE~FKk~LmqSLq~d~ 130 (272)
+ ...+.|...++......+.++
T Consensus 213 ~~~~~~~~~~l~~~~~~~~a~~~~~~ 238 (301)
T PF14362_consen 213 DAQIAARKARLDEARQAKVAEFQAII 238 (301)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhHhh
Confidence 4 555566666666555544443
No 128
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=89.13 E-value=2.1 Score=32.26 Aligned_cols=48 Identities=15% Similarity=0.374 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 024140 67 AELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVF 118 (272)
Q Consensus 67 ~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~F 118 (272)
.++++|+..+|.. +....++..+|..-...+...++.++.++.+|+.=
T Consensus 2 ~~i~e~l~~ie~~----l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n 49 (71)
T PF10779_consen 2 QDIKEKLNRIETK----LDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSN 49 (71)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555533 33555556666666666666677788888777653
No 129
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=89.13 E-value=4.8 Score=42.02 Aligned_cols=75 Identities=25% Similarity=0.390 Sum_probs=45.6
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 40 AISTRVSDLESEHSALRSQLAEKD----------------SRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTN 103 (272)
Q Consensus 40 A~atRVs~LE~E~~~LR~~L~EKd----------------~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~ 103 (272)
....||..||..+..|+.++++.. +.+..|++++..|+..|+ .-..++..|..-+.....
T Consensus 47 ~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE~L~~qlq----aqv~~ne~Ls~L~~EqEe 122 (617)
T PF15070_consen 47 HDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELESLEEQLQ----AQVENNEQLSRLNQEQEE 122 (617)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 466889999999999998887332 233456666666665554 444455555544444444
Q ss_pred HHHHHhhhHHHHHHH
Q 024140 104 TVRKLQRDVSKLEVF 118 (272)
Q Consensus 104 TvKkL~rDvaKLE~F 118 (272)
.+..|.+.|..++..
T Consensus 123 rL~ELE~~le~~~e~ 137 (617)
T PF15070_consen 123 RLAELEEELERLQEQ 137 (617)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555554443
No 130
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=89.10 E-value=3 Score=48.45 Aligned_cols=47 Identities=30% Similarity=0.497 Sum_probs=35.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKE 92 (272)
Q Consensus 46 s~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~ 92 (272)
.+|.+||++|+..|.+|+++|++|..++..+...++.+|.....++.
T Consensus 1310 ~kL~~ei~~Lk~el~~ke~~~~el~~~~~~~q~~~k~qld~l~~e~~ 1356 (1822)
T KOG4674|consen 1310 EKLKSEISRLKEELEEKENLIAELKKELNRLQEKIKKQLDELNNEKA 1356 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677899999999999999999999998888655544444443333
No 131
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=89.10 E-value=2 Score=34.87 Aligned_cols=59 Identities=19% Similarity=0.365 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 024140 51 EHSALRSQLAEKDSRIAELQSQIESI--YSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (272)
Q Consensus 51 E~~~LR~~L~EKd~~i~~Lq~r~s~l--e~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDva 113 (272)
++..|.+.+.+.++.+..|+.++..| ...+. ...-+..++..+-+.|..+++-++|.+.
T Consensus 36 ~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~----~L~l~l~el~G~~~~l~~~l~~v~~~~~ 96 (106)
T PF10805_consen 36 DIEKLEERLDEHDRRLQALETKLEHLPTRDDVH----DLQLELAELRGELKELSARLQGVSHQLD 96 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH----HHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 44445544444444444444443333 22222 3333444444444555555555544444
No 132
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=88.98 E-value=7.5 Score=37.30 Aligned_cols=86 Identities=17% Similarity=0.185 Sum_probs=48.5
Q ss_pred hhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 024140 44 RVSDLESEHSALRSQLA-EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (272)
Q Consensus 44 RVs~LE~E~~~LR~~L~-EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~L 122 (272)
+|-.|+.++..|+.++. |....+..++..+..+...+. .|....++..+-..+-.........|.||+.--+..=..|
T Consensus 283 ~v~~l~~~i~~l~~~l~~e~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~~~~~~l~~~~~~~~~L~r~~~~~~~~y~~l 361 (444)
T TIGR03017 283 QYKRAQAEINSLKSQLNAEIKKVTSSVGTNSRILKQREA-ELREALENQKAKVLELNRQRDEMSVLQRDVENAQRAYDAA 361 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777888888776 334444444444443333332 2222222222112223333456778899998888888888
Q ss_pred Hhhccccc
Q 024140 123 VQSLKDDE 130 (272)
Q Consensus 123 mqSLq~d~ 130 (272)
++.+++-.
T Consensus 362 l~r~~e~~ 369 (444)
T TIGR03017 362 MQRYTQTR 369 (444)
T ss_pred HHHHHHHH
Confidence 88876654
No 133
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=88.92 E-value=6.8 Score=42.11 Aligned_cols=71 Identities=32% Similarity=0.392 Sum_probs=39.5
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024140 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS----------DKLGQAQADKERLSKENEALTNTVRKLQ 109 (272)
Q Consensus 40 A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~----------~rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (272)
|.-.+-..|-+++..||..|.+|...+...+.++..++.++. +.+.....+...|++..++|..+++.=.
T Consensus 333 ~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd 412 (775)
T PF10174_consen 333 AKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKD 412 (775)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445556666666666666666666665555555555543 3444444455555555555555554433
Q ss_pred h
Q 024140 110 R 110 (272)
Q Consensus 110 r 110 (272)
+
T Consensus 413 ~ 413 (775)
T PF10174_consen 413 R 413 (775)
T ss_pred H
Confidence 3
No 134
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=88.89 E-value=3.4 Score=36.84 Aligned_cols=21 Identities=43% Similarity=0.615 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHhhhHHHH
Q 024140 95 SKENEALTNTVRKLQRDVSKL 115 (272)
Q Consensus 95 ~~E~~~La~TvKkL~rDvaKL 115 (272)
...|+.|.+-+.||..|+.+|
T Consensus 94 ~~~N~~L~~dl~klt~~~~~l 114 (182)
T PF15035_consen 94 RKANEALQEDLQKLTQDWERL 114 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555666666666666553
No 135
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=88.80 E-value=6 Score=38.71 Aligned_cols=87 Identities=17% Similarity=0.203 Sum_probs=53.8
Q ss_pred HhhhhhHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH---HHH
Q 024140 43 TRVSDLESEHSALRSQLAEK--------------DSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENE---ALT 102 (272)
Q Consensus 43 tRVs~LE~E~~~LR~~L~EK--------------d~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~---~La 102 (272)
-+|-.|..+++.|+.++.+- +....+|+.++..++.++. .++....++.+++..+-. .+.
T Consensus 275 P~v~~l~~qi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 354 (498)
T TIGR03007 275 PDVIATKREIAQLEEQKEEEGSAKNGGPERGEIANPVYQQLQIELAEAEAEIASLEARVAELTARIERLESLLRTIPEVE 354 (498)
T ss_pred hHHHHHHHHHHHHHHHHHhhccccccCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 35667777788887776542 1123445555555555554 344444444444444433 355
Q ss_pred HHHHHHhhhHHHHHHHHHHHHhhcccc
Q 024140 103 NTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (272)
Q Consensus 103 ~TvKkL~rDvaKLE~FKk~LmqSLq~d 129 (272)
.....|+||+.-.+..=..|++.+++-
T Consensus 355 ~el~~L~Re~~~~~~~Y~~l~~r~eea 381 (498)
T TIGR03007 355 AELTQLNRDYEVNKSNYEQLLTRRESA 381 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677789999988888878888877664
No 136
>PRK09039 hypothetical protein; Validated
Probab=88.70 E-value=15 Score=35.38 Aligned_cols=6 Identities=0% Similarity=0.174 Sum_probs=2.9
Q ss_pred cccccc
Q 024140 188 FVLASQ 193 (272)
Q Consensus 188 ~~~t~~ 193 (272)
+.+..|
T Consensus 265 I~I~GH 270 (343)
T PRK09039 265 LRVDGH 270 (343)
T ss_pred EEEEEe
Confidence 344555
No 137
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=88.67 E-value=2 Score=32.07 Aligned_cols=38 Identities=26% Similarity=0.474 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 66 IAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRK 107 (272)
Q Consensus 66 i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKk 107 (272)
|.+|+.++..++..+. ....++.+|.++.+.+..+||+
T Consensus 2 i~elEn~~~~~~~~i~----tvk~en~~i~~~ve~i~envk~ 39 (55)
T PF05377_consen 2 IDELENELPRIESSIN----TVKKENEEISESVEKIEENVKD 39 (55)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555443 3344444444444444444433
No 138
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=88.60 E-value=3.6 Score=44.17 Aligned_cols=42 Identities=31% Similarity=0.414 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
Q 024140 55 LRSQLAEKDSRIAELQSQIESIYSS------LSDKLGQAQADKERLSK 96 (272)
Q Consensus 55 LR~~L~EKd~~i~~Lq~r~s~le~~------l~~rL~~a~ee~~kL~~ 96 (272)
+|+.|+|||+.|..|...-..|-.. ++-||+....++..|.+
T Consensus 444 ~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~etl~~ 491 (961)
T KOG4673|consen 444 LKDELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAETLEE 491 (961)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 3456777888887777654444221 11455555444444433
No 139
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=88.54 E-value=4.8 Score=34.34 Aligned_cols=63 Identities=22% Similarity=0.339 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 024140 62 KDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENE-----ALTNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (272)
Q Consensus 62 Kd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~-----~La~TvKkL~rDvaKLE~FKk~LmqSLq~ 128 (272)
|+..+.+|++++..+|.+|+ +..-+..++.+|.. .+.+--...+.+.++++.+|+.|.+-|+.
T Consensus 18 K~~l~~~l~~~i~~~d~el~----QLefq~kr~~~e~~~~~~~~~~~i~~q~~~e~~~r~e~k~~l~~ql~q 85 (131)
T PF11068_consen 18 KEELLQELQEQIQQLDQELQ----QLEFQGKRMIKEIKKQNAQQIQSIQQQFEQEKQERLEQKNQLLQQLEQ 85 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777888888888888887 55555555555553 44444466667777777777777665543
No 140
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=88.52 E-value=5.1 Score=41.70 Aligned_cols=41 Identities=22% Similarity=0.420 Sum_probs=16.6
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 41 ~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~ 81 (272)
+..++..++.|+..|+..+.+-..++.+.+.....++.++.
T Consensus 340 l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~ 380 (594)
T PF05667_consen 340 LESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK 380 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444333444444444444444443
No 141
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=88.45 E-value=7.2 Score=35.03 Aligned_cols=79 Identities=19% Similarity=0.329 Sum_probs=50.5
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H---HHHHH-----HHHHHHHHHHHHHHHHHHH
Q 024140 38 SIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---D---KLGQA-----QADKERLSKENEALTNTVR 106 (272)
Q Consensus 38 s~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~---~---rL~~a-----~ee~~kL~~E~~~La~TvK 106 (272)
...+..-+.....||+.||.+|-.....+.+++.++-..+.+|. + +|... +.+..+|+.+-+.+...+.
T Consensus 56 e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~ 135 (194)
T PF15619_consen 56 EAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQ 135 (194)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHH
Confidence 45566778888899999999998888888888888888888776 2 22221 1233455555555555444
Q ss_pred HHhhhHHHHH
Q 024140 107 KLQRDVSKLE 116 (272)
Q Consensus 107 kL~rDvaKLE 116 (272)
.-.+.+..|+
T Consensus 136 ~~~~ki~~Le 145 (194)
T PF15619_consen 136 EKEKKIQELE 145 (194)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 142
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=88.42 E-value=4.9 Score=41.61 Aligned_cols=37 Identities=14% Similarity=0.339 Sum_probs=16.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (272)
Q Consensus 44 RVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l 80 (272)
+...||.++..|+....++.-.+.+|+.++..|+.++
T Consensus 296 ~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i 332 (754)
T TIGR01005 296 RQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQI 332 (754)
T ss_pred HHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444443
No 143
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=88.40 E-value=11 Score=35.91 Aligned_cols=40 Identities=23% Similarity=0.307 Sum_probs=24.0
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 42 atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~ 81 (272)
..-+..++.|+..|.+.-.+..+++.+|++....++.++.
T Consensus 42 ~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~ 81 (314)
T PF04111_consen 42 EEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELE 81 (314)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666666666666666666655
No 144
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=88.35 E-value=14 Score=37.80 Aligned_cols=85 Identities=29% Similarity=0.406 Sum_probs=57.1
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHH-------HHHH
Q 024140 37 TSIAISTRVSDLESEHSALRSQLAE------------------------KDSRIAELQSQIESIYSSLS-------DKLG 85 (272)
Q Consensus 37 ts~A~atRVs~LE~E~~~LR~~L~E------------------------Kd~~i~~Lq~r~s~le~~l~-------~rL~ 85 (272)
..+-+-.||.+||.|-+-|-.||.+ --.||.-|+..|..|-..|. .+|.
T Consensus 202 lvN~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~ 281 (552)
T KOG2129|consen 202 LVNSLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLM 281 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677888999999999988888742 12345555555555544444 5555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 024140 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQ 124 (272)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~Lmq 124 (272)
+-.+|.....+||..| -+||.+.|.|=|++-|+|-.
T Consensus 282 qy~~Ee~~~reen~rl---QrkL~~e~erRealcr~lsE 317 (552)
T KOG2129|consen 282 QYRAEEVDHREENERL---QRKLINELERREALCRMLSE 317 (552)
T ss_pred HHHHHHhhHHHHHHHH---HHHHHHHHHHHHHHHHHhhh
Confidence 5555555555555554 47899999999999888854
No 145
>PRK04406 hypothetical protein; Provisional
Probab=88.34 E-value=3.6 Score=31.93 Aligned_cols=16 Identities=25% Similarity=0.501 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 024140 66 IAELQSQIESIYSSLS 81 (272)
Q Consensus 66 i~~Lq~r~s~le~~l~ 81 (272)
|..|++|+..||..+.
T Consensus 6 ~~~le~Ri~~LE~~lA 21 (75)
T PRK04406 6 IEQLEERINDLECQLA 21 (75)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4456666666665443
No 146
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=88.18 E-value=3.4 Score=31.16 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=8.9
Q ss_pred HHHHHhhhHHHHHHHHHHHHhhccc
Q 024140 104 TVRKLQRDVSKLEVFRKTLVQSLKD 128 (272)
Q Consensus 104 TvKkL~rDvaKLE~FKk~LmqSLq~ 128 (272)
+|.+.++++.+|+.--+.|..-|.+
T Consensus 26 ~v~~Qq~~I~~L~~~l~~L~~rl~~ 50 (69)
T PF04102_consen 26 VVTEQQRQIDRLQRQLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444433444444433
No 147
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=88.13 E-value=2 Score=37.35 Aligned_cols=68 Identities=21% Similarity=0.312 Sum_probs=35.7
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024140 40 AISTRVSDLESEHSALRSQLAEKDSRIAE-LQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRD 111 (272)
Q Consensus 40 A~atRVs~LE~E~~~LR~~L~EKd~~i~~-Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rD 111 (272)
.+..++..+|.+++.++.+.......... +.+....++.++. ...++..+..+|.+.|..+++.|+++
T Consensus 122 ~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~----~lk~el~~~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 122 SLIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIE----KLKKELEKKEKEIEALKKQSEGLQKE 190 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55556666666666666655433322222 2222233333332 44555555666777777777777664
No 148
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=88.10 E-value=4.9 Score=32.64 Aligned_cols=28 Identities=18% Similarity=0.273 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 024140 88 QADKERLSKENEALTNTVRKLQRDVSKL 115 (272)
Q Consensus 88 ~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (272)
.++..+|..+-..+...++.|+..|.-+
T Consensus 64 ~~dv~~L~l~l~el~G~~~~l~~~l~~v 91 (106)
T PF10805_consen 64 RDDVHDLQLELAELRGELKELSARLQGV 91 (106)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3444444444444444444444444433
No 149
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=88.10 E-value=8.7 Score=40.56 Aligned_cols=85 Identities=22% Similarity=0.379 Sum_probs=47.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH----HHH
Q 024140 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVS----KLE 116 (272)
Q Consensus 41 ~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDva----KLE 116 (272)
+-.++..||.-+.+|+....+=++.|.+|++.+..|+..|. +++.-........+|-..+...+.+|++.|. +.|
T Consensus 420 ~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~-~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve 498 (652)
T COG2433 420 YEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELE-RFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVE 498 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666666666666666663 4444444444444555555555555555443 345
Q ss_pred HHHHHHHhhc
Q 024140 117 VFRKTLVQSL 126 (272)
Q Consensus 117 ~FKk~LmqSL 126 (272)
-||+.|-+-.
T Consensus 499 ~L~~~l~~l~ 508 (652)
T COG2433 499 ELERKLAELR 508 (652)
T ss_pred HHHHHHHHHH
Confidence 5555554433
No 150
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=88.07 E-value=8.7 Score=40.41 Aligned_cols=77 Identities=23% Similarity=0.372 Sum_probs=55.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhhHH
Q 024140 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERL-------SKENEALTNTVRKLQRDVS 113 (272)
Q Consensus 44 RVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL-------~~E~~~La~TvKkL~rDva 113 (272)
|-..|+.||++||..+.+.|..|..++..+..-|.++. +++.....++.=| ..+...|..-.++|+..|.
T Consensus 80 ~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c~~~~~~l~e~~~rl~~~~~ 159 (632)
T PF14817_consen 80 RRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQCEEQRRILREYTKRLQGQVE 159 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66789999999999999999999999999999888887 5555555554333 3455555666666666666
Q ss_pred HHHHHHH
Q 024140 114 KLEVFRK 120 (272)
Q Consensus 114 KLE~FKk 120 (272)
.|+...|
T Consensus 160 ~~q~~~R 166 (632)
T PF14817_consen 160 QLQDIQR 166 (632)
T ss_pred HHHHHHh
Confidence 6555443
No 151
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=88.05 E-value=4.5 Score=42.87 Aligned_cols=51 Identities=20% Similarity=0.347 Sum_probs=27.4
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 024140 53 SALRSQL-AEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTN 103 (272)
Q Consensus 53 ~~LR~~L-~EKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~ 103 (272)
..||.+- ..-+..-.+|++|+..|..+.. .+|.++.++..+|+..-..|+.
T Consensus 546 ~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~Lae 600 (717)
T PF10168_consen 546 KVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAE 600 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566663 3344446777888777776665 3444444444444433333333
No 152
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=88.03 E-value=8.2 Score=29.17 Aligned_cols=56 Identities=30% Similarity=0.395 Sum_probs=36.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024140 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQ 109 (272)
Q Consensus 46 s~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (272)
+.||+||+. |...-.+|. ++-.....+..||..+...|..|..|.+.|...+..|.
T Consensus 4 saL~~Eira-------kQ~~~eEL~-kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 4 SALEAEIRA-------KQAIQEELT-KVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHH-------HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHH-------HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 457777653 444444553 34444444448888999888888888777777766654
No 153
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=87.98 E-value=9.1 Score=38.86 Aligned_cols=36 Identities=22% Similarity=0.311 Sum_probs=24.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 46 s~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~ 81 (272)
-.|++|.+.++.++.+|+.++.+||+....|-.++.
T Consensus 37 ~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v 72 (459)
T KOG0288|consen 37 VILRAESRAIKAKLQEKELELNRLQEENTQLNEERV 72 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777777777777777777776666655544
No 154
>PF11594 Med28: Mediator complex subunit 28; InterPro: IPR021640 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. Subunit Med28 of the Mediator may function as a scaffolding protein within Mediator by maintaining the stability of a submodule within the head module, and components of this submodule act together in a gene-regulatory programme to suppress smooth muscle cell differentiation. Thus, mammalian Mediator subunit Med28 functions as a repressor of smooth muscle-cell differentiation, which could have implications for disorders associated with abnormalities in smooth muscle cell growth and differentiation, including atherosclerosis, asthma, hypertension, and smooth muscle tumours [].
Probab=87.90 E-value=4.1 Score=34.07 Aligned_cols=52 Identities=27% Similarity=0.379 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHhh--------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 30 LDVARKITSIAISTRV--------SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 30 LdlarkIts~A~atRV--------s~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~ 81 (272)
||+||+.=++-+-.|. .-|+.|+..||..|+-|++.+..+.+++...+.-|.
T Consensus 14 lD~aRq~e~~FlqKr~~LS~~kpe~~lkEEi~eLK~ElqRKe~Ll~Kh~~kI~~w~~lL~ 73 (106)
T PF11594_consen 14 LDVARQMEAFFLQKRFELSAYKPEQVLKEEINELKEELQRKEQLLQKHYEKIDYWEKLLS 73 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999988887775 368899999999999999999999999988876654
No 155
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.87 E-value=4.6 Score=38.37 Aligned_cols=28 Identities=29% Similarity=0.526 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 024140 88 QADKERLSKENEALTNTVRKLQRDVSKL 115 (272)
Q Consensus 88 ~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (272)
...+..+.+|++.+-.-+|+|+.+++.|
T Consensus 65 ~~k~~~~~~~i~~~~~eik~l~~eI~~~ 92 (265)
T COG3883 65 QSKIDELQKEIDQSKAEIKKLQKEIAEL 92 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444333
No 156
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=87.87 E-value=3.2 Score=40.02 Aligned_cols=71 Identities=27% Similarity=0.367 Sum_probs=55.9
Q ss_pred HHHHHHHHhhhhhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 36 ITSIAISTRVSDLESEH-------SALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTV 105 (272)
Q Consensus 36 Its~A~atRVs~LE~E~-------~~LR~~L~EKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~Tv 105 (272)
|.-+|--.|+.+||.|+ +.||.+-.|=+.+|.+|-+-|+.....+. .+|++.++++..|.+++..+...|
T Consensus 229 lG~q~s~Gria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sqav 308 (330)
T KOG2991|consen 229 LGHQASEGRIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQAV 308 (330)
T ss_pred HHhhhhcccHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44567778999999885 57888888888888888888887776655 888888888888888887776665
Q ss_pred H
Q 024140 106 R 106 (272)
Q Consensus 106 K 106 (272)
+
T Consensus 309 ~ 309 (330)
T KOG2991|consen 309 G 309 (330)
T ss_pred c
Confidence 4
No 157
>PRK02793 phi X174 lysis protein; Provisional
Probab=87.71 E-value=3.7 Score=31.49 Aligned_cols=10 Identities=20% Similarity=0.454 Sum_probs=4.5
Q ss_pred HHHHHHHHHH
Q 024140 69 LQSQIESIYS 78 (272)
Q Consensus 69 Lq~r~s~le~ 78 (272)
+++|+..||.
T Consensus 6 ~e~Ri~~LE~ 15 (72)
T PRK02793 6 LEARLAELES 15 (72)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 158
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=87.68 E-value=5.1 Score=43.09 Aligned_cols=37 Identities=32% Similarity=0.401 Sum_probs=27.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (272)
Q Consensus 44 RVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l 80 (272)
.|..|++|..+|++.|+.|.+.-..+++-|..+.+++
T Consensus 496 ~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~ 532 (961)
T KOG4673|consen 496 LITKLQSEENKLKSILRDKEETEKLLQETIEKHQAEL 532 (961)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999988876655555555444443
No 159
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=87.66 E-value=6.8 Score=42.09 Aligned_cols=64 Identities=27% Similarity=0.390 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH
Q 024140 33 ARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS----------DKLGQAQADKERLSKENEALT 102 (272)
Q Consensus 33 arkIts~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~----------~rL~~a~ee~~kL~~E~~~La 102 (272)
+.+....+.+.|+ .+++.+|..|+..|..|+.++..++.+.. .-|..+.++++.|+.+++.|-
T Consensus 277 ~~~s~~~~mK~k~-------d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr 349 (775)
T PF10174_consen 277 VYKSHSLAMKSKM-------DRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALR 349 (775)
T ss_pred HHHhhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3555566666663 44444444555444444444444444333 222344444455555554443
Q ss_pred H
Q 024140 103 N 103 (272)
Q Consensus 103 ~ 103 (272)
.
T Consensus 350 ~ 350 (775)
T PF10174_consen 350 F 350 (775)
T ss_pred H
Confidence 3
No 160
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=87.64 E-value=2.3 Score=43.26 Aligned_cols=21 Identities=29% Similarity=0.289 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024140 59 LAEKDSRIAELQSQIESIYSS 79 (272)
Q Consensus 59 L~EKd~~i~~Lq~r~s~le~~ 79 (272)
|+|-.....+||+++..|..+
T Consensus 71 LteqQ~kasELEKqLaaLrqE 91 (475)
T PRK13729 71 TTEMQVTAAQMQKQYEEIRRE 91 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555554444433
No 161
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=87.59 E-value=10 Score=32.80 Aligned_cols=70 Identities=24% Similarity=0.350 Sum_probs=36.1
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 024140 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSK 114 (272)
Q Consensus 42 atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaK 114 (272)
.+....|+.|+..||..-.+=+......+.||+.||.... ..|..+.++..++. ..+...|-.|..++..
T Consensus 65 t~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ek~q~~---e~~~~~ve~L~~ql~~ 137 (140)
T PF10473_consen 65 TSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQEKVQLK---EESKSAVEMLQKQLKE 137 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhh
Confidence 4444556666666664333333334445555777776555 44445556544443 3344555555555443
No 162
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=87.51 E-value=20 Score=34.85 Aligned_cols=86 Identities=27% Similarity=0.436 Sum_probs=53.6
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHH-------HHHHH
Q 024140 37 TSIAISTRVSDLESEHSALRSQLAE-----------------------KDSRIAELQSQIESIYSSLS-------DKLGQ 86 (272)
Q Consensus 37 ts~A~atRVs~LE~E~~~LR~~L~E-----------------------Kd~~i~~Lq~r~s~le~~l~-------~rL~~ 86 (272)
.-+=+-.||.+|++|-+.|..+|.. ...||..|..-|..|-.+|. .++.+
T Consensus 179 lvN~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~d~~~~~~~~Dt~e~~~shI~~Lr~EV~RLR~qL~~sq~e~~~k~~~ 258 (310)
T PF09755_consen 179 LVNRLWKQMDKLEAEKRRLQEKLEQPVSAPPSPRDTVNVSEENDTAERLSSHIRSLRQEVSRLRQQLAASQQEHSEKMAQ 258 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccccCCCCCcchHHhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666666666542 12334444444444433333 56666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Q 024140 87 AQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQS 125 (272)
Q Consensus 87 a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqS 125 (272)
..++-..+..||..|. ++|.++|++-|++=|+|--|
T Consensus 259 ~~~eek~ireEN~rLq---r~L~~E~erreal~R~lses 294 (310)
T PF09755_consen 259 YLQEEKEIREENRRLQ---RKLQREVERREALCRHLSES 294 (310)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 6666677777777776 57899999999999888543
No 163
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=87.50 E-value=4 Score=41.26 Aligned_cols=47 Identities=26% Similarity=0.293 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-----HHHHHHHHhhcccc
Q 024140 83 KLGQAQADKERLSKENEALTNTVRKLQRDVSKL-----EVFRKTLVQSLKDD 129 (272)
Q Consensus 83 rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKL-----E~FKk~LmqSLq~d 129 (272)
.|....++.++|.++.+.+...+.++...+.+. +.|.+.+..-|++=
T Consensus 340 ~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~R~~~a~~l~~~v~~~l~~L 391 (563)
T TIGR00634 340 QLDDSDESLEALEEEVDKLEEELDKAAVALSLIRRKAAERLAKRVEQELKAL 391 (563)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 334444566777778888888888888888777 77777777777653
No 164
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=87.42 E-value=17 Score=33.70 Aligned_cols=54 Identities=17% Similarity=0.294 Sum_probs=38.3
Q ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Q 024140 28 EQLDVARKITSIAISTRVSDLESEHSALRSQLAEKD-----SRIAELQSQIESIYSSLS 81 (272)
Q Consensus 28 EQLdlarkIts~A~atRVs~LE~E~~~LR~~L~EKd-----~~i~~Lq~r~s~le~~l~ 81 (272)
++|+-...-...++..++...+.++..|...+..+. +.+...+.++..+...|.
T Consensus 150 ~~l~~~~~~l~~~~~~~l~~~~~~L~~l~~~l~~~~~~~p~~~l~~~~~~Ld~l~~rL~ 208 (319)
T PF02601_consen 150 QRLDELRQRLNRAMRNRLQRKRQRLNQLAKRLQLQSRRLPERKLEQQQQRLDELKQRLK 208 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666677788888888888888888777655 456777777766666665
No 165
>PRK04863 mukB cell division protein MukB; Provisional
Probab=87.41 E-value=15 Score=42.20 Aligned_cols=28 Identities=14% Similarity=0.090 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 024140 91 KERLSKENEALTNTVRKLQRDVSKLEVF 118 (272)
Q Consensus 91 ~~kL~~E~~~La~TvKkL~rDvaKLE~F 118 (272)
..++..+.+.+...+..++..++.|+.-
T Consensus 399 Laelqqel~elQ~el~q~qq~i~~Le~~ 426 (1486)
T PRK04863 399 LADYQQALDVQQTRAIQYQQAVQALERA 426 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444
No 166
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=87.40 E-value=3.6 Score=30.00 Aligned_cols=20 Identities=30% Similarity=0.400 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024140 61 EKDSRIAELQSQIESIYSSL 80 (272)
Q Consensus 61 EKd~~i~~Lq~r~s~le~~l 80 (272)
-|...|.+|+.++..|+.+.
T Consensus 23 RKk~~~~~Le~~~~~L~~en 42 (64)
T PF00170_consen 23 RKKQYIEELEEKVEELESEN 42 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHH
Confidence 45666777777766665444
No 167
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=87.35 E-value=5 Score=33.10 Aligned_cols=41 Identities=24% Similarity=0.440 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024140 66 IAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQR 110 (272)
Q Consensus 66 i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~r 110 (272)
|.+|-+.+..|-..+ ....+||+.|.-||..|-..+.++..
T Consensus 17 l~~l~~~~~~LK~~~----~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 17 LGQLLEELEELKKQL----QELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333344444444333 37888999999999988888777665
No 168
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=87.30 E-value=5.4 Score=35.43 Aligned_cols=24 Identities=13% Similarity=0.235 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHH
Q 024140 94 LSKENEALTNTVRKLQRDVSKLEV 117 (272)
Q Consensus 94 L~~E~~~La~TvKkL~rDvaKLE~ 117 (272)
++.++....+.|..|.+.-..|++
T Consensus 161 ~~~~~k~~~~ei~~lk~~~~ql~~ 184 (189)
T PF10211_consen 161 RQEEEKKHQEEIDFLKKQNQQLKA 184 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555543
No 169
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=87.25 E-value=15 Score=32.31 Aligned_cols=79 Identities=19% Similarity=0.339 Sum_probs=57.4
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 024140 40 AISTRVSDLESEHSALRSQLAEKDSRI-----AELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSK 114 (272)
Q Consensus 40 A~atRVs~LE~E~~~LR~~L~EKd~~i-----~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaK 114 (272)
-+...|-+||......|..|+|=.+.. .++++=|..+.. +|-+|....++-.+|...+|.|...++.|..-|.+
T Consensus 45 ~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~-lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tier 123 (159)
T PF05384_consen 45 EVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHE-LQVRLAMLREREKQLRERRDELERRLRNLEETIER 123 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678888888888888888655444 233333333221 22566688888899999999999999999999998
Q ss_pred HHHHH
Q 024140 115 LEVFR 119 (272)
Q Consensus 115 LE~FK 119 (272)
-|.+=
T Consensus 124 AE~l~ 128 (159)
T PF05384_consen 124 AENLV 128 (159)
T ss_pred HHHHH
Confidence 87763
No 170
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=87.20 E-value=3.3 Score=45.18 Aligned_cols=96 Identities=21% Similarity=0.250 Sum_probs=77.3
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024140 36 ITSIAISTRVSDLESEHSALRSQLAEKDSRI----AELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRD 111 (272)
Q Consensus 36 Its~A~atRVs~LE~E~~~LR~~L~EKd~~i----~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rD 111 (272)
+-..-+--+++.||.|..+||..|..-.... .+-..++..||.++ +.|+..+..+.+|.+-+..-..+++||...
T Consensus 509 ~~~~~le~e~~~le~E~~~l~~el~~~~~~~~kl~eer~qklk~le~q~-s~lkk~l~~~~~l~~~~~~~~~~~~kl~~e 587 (913)
T KOG0244|consen 509 SDSGTLEAEKSPLESERSRLRNELNVFNRLAAKLGEERVQKLKSLETQI-SLLKKKLSSQRKLIKPKPKSEGIRAKLLQE 587 (913)
T ss_pred hhhhhHHHHhcccccccHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHHH-HHHHHhhHHHHHHhccchhhHHHHHHHHHH
Confidence 3345566677788888889998888655533 33345666677766 688889999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccccccC
Q 024140 112 VSKLEVFRKTLVQSLKDDEDA 132 (272)
Q Consensus 112 vaKLE~FKk~LmqSLq~d~~~ 132 (272)
+-.+|.-|.+||+-..+|.+.
T Consensus 588 i~~~k~~kv~l~~~~~~d~ek 608 (913)
T KOG0244|consen 588 IHIAKGQKVQLLRVMKEDAEK 608 (913)
T ss_pred HHHHHHHHHHHHHHHhhhHHH
Confidence 999999999999999888764
No 171
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=87.07 E-value=11 Score=29.05 Aligned_cols=28 Identities=25% Similarity=0.443 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 024140 88 QADKERLSKENEALTNTVRKLQRDVSKL 115 (272)
Q Consensus 88 ~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (272)
..++..|.++|..|...-..|.+...+|
T Consensus 24 q~e~eeLke~n~~L~~e~~~L~~en~~L 51 (72)
T PF06005_consen 24 QMENEELKEKNNELKEENEELKEENEQL 51 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3333344444333333333333333333
No 172
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=87.04 E-value=8.5 Score=32.80 Aligned_cols=81 Identities=26% Similarity=0.386 Sum_probs=49.0
Q ss_pred HHHhcCCCCchhhHHH---------HHHHH--HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 17 EVLQVLPSDPFEQLDV---------ARKIT--SIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLG 85 (272)
Q Consensus 17 eil~vLP~DP~EQLdl---------arkIt--s~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~ 85 (272)
|++.-|-..|+-.|-. |--|+ .++|..|+.+.|.++.++-.++.|+...+...-+.++.++ .|.
T Consensus 19 ~~leklds~~~l~Lc~R~Q~HL~~cA~~Va~~Q~~L~~riKevd~~~~~l~~~~~erqk~~~k~ae~L~kv~-----els 93 (131)
T PF10158_consen 19 EVLEKLDSRPVLRLCSRYQEHLNQCAEAVAFDQNALAKRIKEVDQEIAKLLQQMVERQKRFAKFAEQLEKVN-----ELS 93 (131)
T ss_pred HHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH
Confidence 5777777677665432 11222 7888888999999999998888888776665554444332 223
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024140 86 QAQADKERLSKENEALT 102 (272)
Q Consensus 86 ~a~ee~~kL~~E~~~La 102 (272)
..+.++..|.++.-.+.
T Consensus 94 ~~L~~~~~lL~~~v~~i 110 (131)
T PF10158_consen 94 QQLSRCQSLLNQTVPSI 110 (131)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444433333
No 173
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=87.03 E-value=8.5 Score=37.73 Aligned_cols=26 Identities=15% Similarity=0.245 Sum_probs=16.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHH
Q 024140 44 RVSDLESEHSALRSQLAEKDSRIAEL 69 (272)
Q Consensus 44 RVs~LE~E~~~LR~~L~EKd~~i~~L 69 (272)
.+..|+.++..|+.++++....+.++
T Consensus 237 ~~~~~~~~i~~l~~~i~~~~~~~~~~ 262 (457)
T TIGR01000 237 ILATIQQQIDQLQKSIASYQVQKAGL 262 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 56666666666666666666666655
No 174
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=86.94 E-value=7.7 Score=30.87 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 82 DKLGQAQADKERLSKENEALTNTVR 106 (272)
Q Consensus 82 ~rL~~a~ee~~kL~~E~~~La~TvK 106 (272)
.+|-.+..++++|..-+..+...++
T Consensus 53 ~eLD~~~ar~~~Le~~~~Evs~rL~ 77 (89)
T PF13747_consen 53 QELDQAEARANRLEEANREVSRRLD 77 (89)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3333555555555555555444444
No 175
>PRK00106 hypothetical protein; Provisional
Probab=86.90 E-value=20 Score=37.11 Aligned_cols=14 Identities=7% Similarity=0.133 Sum_probs=8.4
Q ss_pred HHHHHHHhhccccc
Q 024140 117 VFRKTLVQSLKDDE 130 (272)
Q Consensus 117 ~FKk~LmqSLq~d~ 130 (272)
-.|..||..+.++-
T Consensus 169 eak~~l~~~~~~~~ 182 (535)
T PRK00106 169 EAREIILAETENKL 182 (535)
T ss_pred HHHHHHHHHHHHHH
Confidence 35666676666553
No 176
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=86.89 E-value=5 Score=33.86 Aligned_cols=33 Identities=30% Similarity=0.383 Sum_probs=12.8
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 024140 38 SIAISTRVSDLESEHSALRSQLAEKDSRIAELQ 70 (272)
Q Consensus 38 s~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq 70 (272)
=..+..|+...+.++..++..|.+=...+.+|+
T Consensus 32 F~dL~~R~~~Q~~~~~~~~~~l~~i~~~l~~L~ 64 (141)
T PF13874_consen 32 FEDLKKRVEAQEEEIAQHRERLKEINDKLEELQ 64 (141)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777777776666666663
No 177
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=86.63 E-value=5 Score=35.67 Aligned_cols=30 Identities=20% Similarity=0.366 Sum_probs=16.2
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 024140 40 AISTRVSDLESEHSALRSQLAEKDSRIAEL 69 (272)
Q Consensus 40 A~atRVs~LE~E~~~LR~~L~EKd~~i~~L 69 (272)
+...++.+|+.++..++.++.+-...|.++
T Consensus 66 ~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~ 95 (188)
T PF03962_consen 66 KRQNKLEKLQKEIEELEKKIEELEEKIEEA 95 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555444
No 178
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=86.62 E-value=7.2 Score=44.10 Aligned_cols=81 Identities=21% Similarity=0.350 Sum_probs=55.5
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH----
Q 024140 38 SIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVS---- 113 (272)
Q Consensus 38 s~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDva---- 113 (272)
=+.+..++..+|.|+..|+-|+.+-+ ++..++++..|+..+. ...-+.+.+..+...+.+.|+++.++|.
T Consensus 1010 ~~~l~~q~~e~~re~~~ld~Qi~~~~--~~~~~ee~~~L~~~~~----~l~se~~~~lg~~ke~e~~i~~~k~eL~~~~~ 1083 (1294)
T KOG0962|consen 1010 LRNLERKLKELERELSELDKQILEAD--IKSVKEERVKLEEERE----KLSSEKNLLLGEMKQYESQIKKLKQELREKDF 1083 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHH----HhhhHhhHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 35566677777777777777776655 5566666666665554 5555667777778888888888888887
Q ss_pred --HHHHHHHHHHh
Q 024140 114 --KLEVFRKTLVQ 124 (272)
Q Consensus 114 --KLE~FKk~Lmq 124 (272)
..++|.++++.
T Consensus 1084 kd~~~nyr~~~ie 1096 (1294)
T KOG0962|consen 1084 KDAEKNYRKALIE 1096 (1294)
T ss_pred ccHHHHHHHHHHH
Confidence 46677666654
No 179
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=86.55 E-value=2.3 Score=42.97 Aligned_cols=57 Identities=18% Similarity=0.202 Sum_probs=42.8
Q ss_pred CchhhHHHHHHHHH-HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 25 DPFEQLDVARKITS-IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 25 DP~EQLdlarkIts-~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~ 81 (272)
+|.+|+++--.+.. ..+..++..+..+...++++|.+......++++++..|+.++.
T Consensus 142 ~~~~~~~lLD~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ 199 (563)
T TIGR00634 142 RPDEQRQLLDTFAGANEKVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLE 199 (563)
T ss_pred CHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 88899888777764 3577788888888888888887777777777777776666655
No 180
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.51 E-value=8 Score=36.78 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024140 86 QAQADKERLSKENEALTNTVRK 107 (272)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKk 107 (272)
+..++..+|++|.+.|.++++.
T Consensus 77 ~~~~eik~l~~eI~~~~~~I~~ 98 (265)
T COG3883 77 QSKAEIKKLQKEIAELKENIVE 98 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444443
No 181
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=86.50 E-value=5.2 Score=44.37 Aligned_cols=68 Identities=19% Similarity=0.352 Sum_probs=52.2
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024140 38 SIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQ 109 (272)
Q Consensus 38 s~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (272)
..+++.-+.-||.-|+.||++|.||.....+|+..+..++.++. ..++++..+..|......-.++|.
T Consensus 172 ~~hL~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~----klrqe~~e~l~ea~ra~~yrdeld 239 (1195)
T KOG4643|consen 172 NLHLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEIS----KLRQEIEEFLDEAHRADRYRDELD 239 (1195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhhhhhHHH
Confidence 56778888899999999999999999999999999999888775 566666666665554444444333
No 182
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=86.25 E-value=3.3 Score=40.34 Aligned_cols=31 Identities=19% Similarity=0.295 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 024140 97 ENEALTNTVRKLQRDVSKLEVFRKTLVQSLK 127 (272)
Q Consensus 97 E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq 127 (272)
|+..|+.-+.+-.++--||-+=+..|++.+.
T Consensus 84 erqdLaa~i~etkeeNlkLrTd~eaL~dq~a 114 (389)
T KOG4687|consen 84 ERQDLAADIEETKEENLKLRTDREALLDQKA 114 (389)
T ss_pred hhhHHHHHHHHHHHHhHhhhHHHHHHHHHHH
Confidence 4455555555555555555555555554433
No 183
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=86.15 E-value=9.7 Score=36.37 Aligned_cols=81 Identities=21% Similarity=0.286 Sum_probs=52.1
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHH
Q 024140 42 STRVSDLESEHSALRSQLAEKDSRI---AELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQ----RDVSK 114 (272)
Q Consensus 42 atRVs~LE~E~~~LR~~L~EKd~~i---~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~----rDvaK 114 (272)
..|+.-|--|-.-+|.||-.+-+.- .--++|.+.+|.++. ...|||.+|+.||+.|-..-+.|. .-+..
T Consensus 58 r~RL~HLS~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~----dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~ 133 (292)
T KOG4005|consen 58 RRRLDHLSWEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIK----DLTEENEILQNENDSLRAINESLLAKNHELDSE 133 (292)
T ss_pred HHhhcccCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 4566666666666666664332111 112345666665554 888899999999999887766663 44677
Q ss_pred HHHHHHHHHhhc
Q 024140 115 LEVFRKTLVQSL 126 (272)
Q Consensus 115 LE~FKk~LmqSL 126 (272)
||-++..||.+=
T Consensus 134 le~~~~~l~~~~ 145 (292)
T KOG4005|consen 134 LELLRQELAELK 145 (292)
T ss_pred HHHHHHHHHhhH
Confidence 888888887663
No 184
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=86.06 E-value=8.5 Score=37.62 Aligned_cols=43 Identities=19% Similarity=0.375 Sum_probs=22.6
Q ss_pred CCCCChhHHHhcCCCCc-hhhHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 024140 10 STFDLPEEVLQVLPSDP-FEQLDVARKITSIAISTRVSDLESEHSALR 56 (272)
Q Consensus 10 ~dF~lp~eil~vLP~DP-~EQLdlarkIts~A~atRVs~LE~E~~~LR 56 (272)
+||+.=+-|=..+|+.- ..+||--+ ..+..++..|+.||..+-
T Consensus 2 ~dfdpv~~in~lfp~e~SL~~ld~~i----~~l~~~i~~ld~eI~~~v 45 (383)
T PF04100_consen 2 PDFDPVDYINELFPDEQSLSNLDELI----AKLRKEIRELDEEIKELV 45 (383)
T ss_pred CCCCHHHHHHHhCCChHHHHhHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 36777777777777632 13333332 344445555555555433
No 185
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=86.03 E-value=11 Score=33.28 Aligned_cols=46 Identities=24% Similarity=0.255 Sum_probs=40.6
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 36 ITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 36 Its~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~ 81 (272)
+----+.-|+..+|.+...|++.|..|...|...+..|..++..+.
T Consensus 79 ~~r~~l~~~~~~~e~~~a~l~~~l~~~~~~ia~~~raIarn~a~id 124 (158)
T PF09486_consen 79 RYRDVLEERVRAAEAELAALRQALRAAEDEIAATRRAIARNDARID 124 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 3344567899999999999999999999999999999999998887
No 186
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=86.00 E-value=6.9 Score=35.89 Aligned_cols=67 Identities=28% Similarity=0.395 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 024140 50 SEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (272)
Q Consensus 50 ~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE 116 (272)
+||-.||.+|.+-...+...+.++..|..++. .-|.....+......|...|-..|-+|..+++.|.
T Consensus 31 ~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr 100 (202)
T PF06818_consen 31 SEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELR 100 (202)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHH
Confidence 45555555555555555555555555555554 33446666767777777777777878777777764
No 187
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=85.89 E-value=5.5 Score=30.64 Aligned_cols=35 Identities=34% Similarity=0.505 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 024140 84 LGQAQADKERLSKENEALTNTVRKLQRDVSKLEVF 118 (272)
Q Consensus 84 L~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~F 118 (272)
+.+..++..+|.+..-.+.++||||...+..+|.-
T Consensus 14 Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~ 48 (74)
T PF12329_consen 14 IAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQ 48 (74)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 34777888888888888888888888887777643
No 188
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=85.89 E-value=6.5 Score=36.41 Aligned_cols=63 Identities=11% Similarity=0.169 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 024140 49 ESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (272)
Q Consensus 49 E~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (272)
|..+.+|-+.+.-..+.+.+|+.|+..|+.++. ..+-.++.++-+.+.|...-|.|..||..+
T Consensus 39 ~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~----~LrG~~E~~~~~l~~~~~rq~~~y~dld~r 101 (263)
T PRK10803 39 EDRVTQLERISNAHSQLLTQLQQQLSDNQSDID----SLRGQIQENQYQLNQVVERQKQIYLQIDSL 101 (263)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444455555566667777776666665 555555666667777777777777777764
No 189
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=85.77 E-value=7.1 Score=36.16 Aligned_cols=56 Identities=18% Similarity=0.370 Sum_probs=31.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTV 105 (272)
Q Consensus 46 s~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~Tv 105 (272)
..+.++...|+.++.+|+.....+++++..|.-+.. ...+|...|.+|++.|.++|
T Consensus 154 ~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e----~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 154 DKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSE----GLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HcccHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555555555444 55555555555555555544
No 190
>TIGR02559 HrpB7 type III secretion protein HrpB7. This family of genes is found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=85.74 E-value=13 Score=33.01 Aligned_cols=63 Identities=17% Similarity=0.254 Sum_probs=52.5
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Q 024140 38 SIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS------DKLGQAQADKERLSKENEA 100 (272)
Q Consensus 38 s~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~------~rL~~a~ee~~kL~~E~~~ 100 (272)
--.+.-++..+|.++..|++-|..|...|+..+..|..++..+. ++|..+.|.......|-+.
T Consensus 81 r~vl~~~~~~aE~~~aaa~~al~~~~~~laa~~r~iaRn~a~id~c~eR~~~l~ra~ea~~edA~dEEa 149 (158)
T TIGR02559 81 RDVLEAHLGAAEQAEAAARAALQALAAALAAKKREIARLDAQIDVCRERAERLRRAGEAAREEALEEEA 149 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 34457789999999999999999999999999999999999988 7777777777666555443
No 191
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=85.68 E-value=13 Score=30.84 Aligned_cols=30 Identities=33% Similarity=0.431 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 52 HSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 52 ~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~ 81 (272)
+..||.++.+-...|.+|+..+..+...|.
T Consensus 61 L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~ 90 (132)
T PF07926_consen 61 LQQLREELQELQQEINELKAEAESAKAELE 90 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555544555555544444444443
No 192
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=85.58 E-value=13 Score=29.58 Aligned_cols=49 Identities=16% Similarity=0.215 Sum_probs=26.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLS 95 (272)
Q Consensus 46 s~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~ 95 (272)
..||..+.+|-...+.-|+.+.++......|+.++. +|......+..+.
T Consensus 27 ~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k-~L~~~~~Ks~~~i 75 (96)
T PF08647_consen 27 TILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMK-KLNTQLSKSSELI 75 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHhHHHH
Confidence 345555555555556566666666666666666654 3334333433333
No 193
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=85.58 E-value=18 Score=35.12 Aligned_cols=86 Identities=19% Similarity=0.333 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHH---HHHHHHHHHHHHHH
Q 024140 30 LDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESI-----------YSSLS---DKLGQAQADKERLS 95 (272)
Q Consensus 30 LdlarkIts~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~l-----------e~~l~---~rL~~a~ee~~kL~ 95 (272)
+.+-..|...++..|+..||.|-..||.....=......++++-..| -.++. .=|....+++...+
T Consensus 154 ~~~~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQ 233 (306)
T PF04849_consen 154 LSSQKCIQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQ 233 (306)
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 33445577789999999999999999987664443333333332222 11111 23335555666666
Q ss_pred HHHHHHHHHHHHHhhhHHHH
Q 024140 96 KENEALTNTVRKLQRDVSKL 115 (272)
Q Consensus 96 ~E~~~La~TvKkL~rDvaKL 115 (272)
+|...|..+|-.|++.+..+
T Consensus 234 EEIt~LlsqivdlQ~r~k~~ 253 (306)
T PF04849_consen 234 EEITSLLSQIVDLQQRCKQL 253 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666555444
No 194
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=85.53 E-value=20 Score=35.14 Aligned_cols=39 Identities=18% Similarity=0.287 Sum_probs=26.7
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYS 78 (272)
Q Consensus 40 A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~ 78 (272)
.+.+|...+++++..+.+++...+..+..++.....++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 200 (457)
T TIGR01000 162 KSQTQNEAAEKTKAQLDQQISKTDQKLQDYQALKNAISN 200 (457)
T ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455667777777777777777777777777666664444
No 195
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=85.53 E-value=20 Score=34.60 Aligned_cols=75 Identities=19% Similarity=0.269 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHH----HHHHHHHHHHHHHHHHHHHHHHHh
Q 024140 48 LESEHSALRSQLAEKDSRIAELQSQIESIYSSLS--------------DKLG----QAQADKERLSKENEALTNTVRKLQ 109 (272)
Q Consensus 48 LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~--------------~rL~----~a~ee~~kL~~E~~~La~TvKkL~ 109 (272)
|-+.+++++..|.+-.+.|.+|+++|..|+.++. ..+. ...+-..+|.+=.+.|+..-.+|+
T Consensus 72 l~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~~~~~~~n~~~~~~~~t~~la~~t~~L~~~~~~l~ 151 (301)
T PF06120_consen 72 LRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGITENGYIINHLMSQADATRKLAEATRELAVAQERLE 151 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666666666665552 1221 112223344444444666666777
Q ss_pred hhHHHHHHHHHHH
Q 024140 110 RDVSKLEVFRKTL 122 (272)
Q Consensus 110 rDvaKLE~FKk~L 122 (272)
+.+.|+...-++|
T Consensus 152 q~~~k~~~~q~~l 164 (301)
T PF06120_consen 152 QMQSKASETQATL 164 (301)
T ss_pred HHHHHHHHHHHHH
Confidence 7777666654433
No 196
>PRK12705 hypothetical protein; Provisional
Probab=85.48 E-value=13 Score=38.27 Aligned_cols=14 Identities=29% Similarity=0.389 Sum_probs=10.1
Q ss_pred HHHHHHhhcccccc
Q 024140 118 FRKTLVQSLKDDED 131 (272)
Q Consensus 118 FKk~LmqSLq~d~~ 131 (272)
.|+.||..+.++-.
T Consensus 143 ak~~l~~~~~~~~~ 156 (508)
T PRK12705 143 ARKLLLKLLDAELE 156 (508)
T ss_pred HHHHHHHHHHHHHH
Confidence 58888888876643
No 197
>PRK00295 hypothetical protein; Provisional
Probab=85.30 E-value=7.4 Score=29.53 Aligned_cols=40 Identities=15% Similarity=0.070 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024140 66 IAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQ 109 (272)
Q Consensus 66 i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (272)
|.+||.|++-.|..+. ...+...+.+++.+.|...++.|.
T Consensus 7 i~~LE~kla~qE~tie----~Ln~~v~~Qq~~I~~L~~ql~~L~ 46 (68)
T PRK00295 7 VTELESRQAFQDDTIQ----ALNDVLVEQQRVIERLQLQMAALI 46 (68)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555554444332 444444444445455554444443
No 198
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=85.18 E-value=18 Score=29.16 Aligned_cols=42 Identities=29% Similarity=0.322 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 024140 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLK 127 (272)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq 127 (272)
...+-..-|.+..+.|...+++|+.++.+|..--.++++-|+
T Consensus 83 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l~ 124 (126)
T TIGR00293 83 DAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEAQ 124 (126)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345556677788888888999999999888877777766554
No 199
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=85.14 E-value=30 Score=32.03 Aligned_cols=80 Identities=18% Similarity=0.298 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H----------------HHH---------------HHHHHHHHHHHHH
Q 024140 52 HSALRSQLAEKDSRIAELQSQIESIYSSLS--D----------------KLG---------------QAQADKERLSKEN 98 (272)
Q Consensus 52 ~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~--~----------------rL~---------------~a~ee~~kL~~E~ 98 (272)
+..|+++|.||++.|-.|+.-+...|..+- . |.. ..+|+...-....
T Consensus 59 ~~~L~~~LrEkEErILaLEad~~kWEqkYLEEs~mrq~a~dAaa~aa~~rdttiI~~s~~~s~~~s~r~~eel~~a~~K~ 138 (205)
T PF12240_consen 59 ASNLKELLREKEERILALEADMTKWEQKYLEESAMRQFAMDAAATAAAQRDTTIINHSPSESYNSSLREEEELHMANRKC 138 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCCCCCCccccchHHHHHhhhhH
Confidence 445788899999999999988888776654 1 111 0122222223344
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhcccccc
Q 024140 99 EALTNTVRKLQRDVSKLEVFRKTLVQSLKDDED 131 (272)
Q Consensus 99 ~~La~TvKkL~rDvaKLE~FKk~LmqSLq~d~~ 131 (272)
-.|.+.||.|+..|..=++.=|.|=|..+.|..
T Consensus 139 qemE~RIK~LhaqI~EKDAmIkVLQqrs~~~~~ 171 (205)
T PF12240_consen 139 QEMENRIKALHAQIAEKDAMIKVLQQRSRKDPG 171 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Confidence 567889999999999988888888888777764
No 200
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=85.13 E-value=12 Score=42.11 Aligned_cols=42 Identities=21% Similarity=0.354 Sum_probs=38.3
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 40 A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~ 81 (272)
+=..|+..|+.+|..|+.++++.++.+..|+.++..|+.++.
T Consensus 739 ~R~~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~ 780 (1353)
T TIGR02680 739 ARLRRIAELDARLAAVDDELAELARELRALGARQRALADELA 780 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345689999999999999999999999999999999998877
No 201
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=85.02 E-value=14 Score=27.70 Aligned_cols=61 Identities=21% Similarity=0.324 Sum_probs=38.9
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 024140 51 EHSALRSQLA-EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (272)
Q Consensus 51 E~~~LR~~L~-EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (272)
++..+..+|. +++..-.+||.-|-.=-..| -.+-+++.+|.++-..|.+.+..|+..+.+|
T Consensus 23 ~i~~~~~~L~~~i~~~~~eLr~~V~~nY~~f----I~as~~I~~m~~~~~~l~~~l~~l~~~~~~l 84 (87)
T PF08700_consen 23 EIRQLENKLRQEIEEKDEELRKLVYENYRDF----IEASDEISSMENDLSELRNLLSELQQSIQSL 84 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333 33344444554444444444 4888888899999889999998888888776
No 202
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=84.94 E-value=6.9 Score=36.95 Aligned_cols=80 Identities=23% Similarity=0.313 Sum_probs=44.2
Q ss_pred HhhhhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhh
Q 024140 43 TRVSDLESEHSALRSQLAE-------KDSRIAELQSQIESIYSSLSDKLGQAQADKERLSK----ENEALTNTVRKLQRD 111 (272)
Q Consensus 43 tRVs~LE~E~~~LR~~L~E-------Kd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~----E~~~La~TvKkL~rD 111 (272)
.-++.|+.++..++.+|++ ..-.+..|+.++..|+.++. +++.++.. ....+......|.||
T Consensus 214 ~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~~~i~~l~~~i~-------~e~~~i~~~~~~~l~~~~~~~~~L~re 286 (362)
T TIGR01010 214 SLISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQARIKSLRKQID-------EQRNQLSGGLGDSLNEQTADYQRLVLQ 286 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHHH-------HHHHHhhcCCCccHHHHHHHHHHHHHH
Confidence 3344555555555444443 33445667777777777665 11122211 234445567788888
Q ss_pred HHHHHHHHHHHHhhcccc
Q 024140 112 VSKLEVFRKTLVQSLKDD 129 (272)
Q Consensus 112 vaKLE~FKk~LmqSLq~d 129 (272)
+.--+..=..+++.+++-
T Consensus 287 ~~~a~~~y~~~l~r~~~a 304 (362)
T TIGR01010 287 NELAQQQLKAALTSLQQT 304 (362)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 877666666666666544
No 203
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=84.84 E-value=2.1 Score=41.53 Aligned_cols=68 Identities=19% Similarity=0.404 Sum_probs=11.8
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKL 108 (272)
Q Consensus 41 ~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL 108 (272)
+..++..|..|+..++....|.-..|..+..+...++..|..|+..+.+++..|.+.-..+.++++.+
T Consensus 103 l~~~~~elkkEie~IKk~q~e~~~~i~~~~~~~~~~~~~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~ 170 (370)
T PF02994_consen 103 LKKRIKELKKEIENIKKNQSEMKLEIENLKKKLENIDESLNSRIDELEERISELEDRIEEIEQAIKEL 170 (370)
T ss_dssp ---------------H-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHH
Confidence 45667778888888887666655555555444443333333344444444444444443333333333
No 204
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=84.83 E-value=2.6 Score=39.38 Aligned_cols=86 Identities=22% Similarity=0.239 Sum_probs=57.2
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 024140 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYS-SLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVF 118 (272)
Q Consensus 43 tRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~-~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~F 118 (272)
.++..+-.....++.-...|+....+.++|-+..=+ ... -+..+...+...|.+||+.|...|..|.+++++|..+
T Consensus 172 ~~~~~~~~K~~~~~~~~~~~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~ 251 (269)
T KOG3119|consen 172 LKPQSTARKKSKLSSPVEKKDPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRL 251 (269)
T ss_pred cCCccchhhhccCCCchhcCCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444445555667777777666553211 111 3344566677889999999999999999999999999
Q ss_pred HHHHHhhccc
Q 024140 119 RKTLVQSLKD 128 (272)
Q Consensus 119 Kk~LmqSLq~ 128 (272)
+.+.++-..+
T Consensus 252 ~~~~~~~~~~ 261 (269)
T KOG3119|consen 252 FLQLPKPGGA 261 (269)
T ss_pred HHhhccccCC
Confidence 8887766443
No 205
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=84.75 E-value=0.29 Score=50.76 Aligned_cols=41 Identities=20% Similarity=0.319 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 024140 83 KLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLV 123 (272)
Q Consensus 83 rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~Lm 123 (272)
+++...++|..|.+.+..|...+++.+.--.+|+.+|+++.
T Consensus 333 qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~ 373 (713)
T PF05622_consen 333 QVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQ 373 (713)
T ss_dssp -----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33344444444555555555555554444445555555443
No 206
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=84.71 E-value=10 Score=42.79 Aligned_cols=81 Identities=22% Similarity=0.261 Sum_probs=46.8
Q ss_pred cCCCCchhhHHHHHHH-----HHHHHHHhhhhhHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHH
Q 024140 21 VLPSDPFEQLDVARKI-----TSIAISTRVSDLESEHSALRSQL--------------AEKDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 21 vLP~DP~EQLdlarkI-----ts~A~atRVs~LE~E~~~LR~~L--------------~EKd~~i~~Lq~r~s~le~~l~ 81 (272)
|.+-+|.+==.+.++. ..+++..++..||..+..||... ..=...|+.|+.++..+|.++.
T Consensus 772 ~t~~s~~~v~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~ 851 (1293)
T KOG0996|consen 772 VTGVSKESVEKLERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAAVL 851 (1293)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5555555433333332 23444555555555555554433 3334466777777778887765
Q ss_pred ------HHHHHHHHHHHHHHHHHHHH
Q 024140 82 ------DKLGQAQADKERLSKENEAL 101 (272)
Q Consensus 82 ------~rL~~a~ee~~kL~~E~~~L 101 (272)
.+|+...+-+.+|.+|.+.|
T Consensus 852 k~~~d~~~l~~~~~~ie~l~kE~e~~ 877 (1293)
T KOG0996|consen 852 KKVVDKKRLKELEEQIEELKKEVEEL 877 (1293)
T ss_pred hccCcHHHHHHHHHHHHHHHHHHHHH
Confidence 66776666677777777777
No 207
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=84.64 E-value=23 Score=29.78 Aligned_cols=41 Identities=15% Similarity=0.264 Sum_probs=19.0
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 38 SIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYS 78 (272)
Q Consensus 38 s~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~ 78 (272)
.+.+..|+..||.++...+-.-.|=...-.+|+..+..|..
T Consensus 11 ~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~ 51 (107)
T PF09304_consen 11 QNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQA 51 (107)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHH
Confidence 45566677777777666654433222222234444444433
No 208
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=84.50 E-value=23 Score=36.83 Aligned_cols=98 Identities=22% Similarity=0.339 Sum_probs=54.0
Q ss_pred chhhHHHHHHHHHHHHHHhhhh-----------hHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH
Q 024140 26 PFEQLDVARKITSIAISTRVSD-----------LESEHSALRSQLAEK----------DSRIAELQSQIESIYSSLSDKL 84 (272)
Q Consensus 26 P~EQLdlarkIts~A~atRVs~-----------LE~E~~~LR~~L~EK----------d~~i~~Lq~r~s~le~~l~~rL 84 (272)
-|-||-||+|.=..-|..||.. |+.||..++..|..= .+.|..|++.+.-|.... .|+
T Consensus 196 ~F~~lsL~f~~D~~TLe~R~~~~eR~RdlaEeNl~kEi~~~~~~l~~l~~lc~~d~e~~e~~~kl~~~l~~l~~~~-~rv 274 (538)
T PF05781_consen 196 EFLRLSLGFKCDRFTLEKRLKLEERSRDLAEENLKKEIENCLKLLESLAPLCWEDNESREIIQKLQKSLDVLHQCA-TRV 274 (538)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 3779999999999999999864 444555555544311 122233333333332222 222
Q ss_pred H-------HHHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHhh
Q 024140 85 G-------QAQADKERLSKENEALTNTVRKLQR----DVSKLEVFRKTLVQS 125 (272)
Q Consensus 85 ~-------~a~ee~~kL~~E~~~La~TvKkL~r----DvaKLE~FKk~LmqS 125 (272)
. .+.|| .++.+--....+-|..|.| +-+.|+-|||.|+|.
T Consensus 275 ss~AE~lGAv~QE-~R~SkAvevM~qhvenLkr~~~kehaeL~E~k~~l~qn 325 (538)
T PF05781_consen 275 SSRAEMLGAVHQE-SRVSKAVEVMIQHVENLKRMYEKEHAELEELKKLLLQN 325 (538)
T ss_pred HHHHHHhcchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 2 22222 2244444455555666655 455689999988764
No 209
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=84.46 E-value=16 Score=34.81 Aligned_cols=67 Identities=15% Similarity=0.287 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 024140 49 ESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (272)
Q Consensus 49 E~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (272)
|-+.+..|.+..-+.-.|.++++.+...-.+++..+....+.+..|..+..+|...++|-..++.+.
T Consensus 143 E~~lr~~R~~a~~r~~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~ 209 (267)
T PF10234_consen 143 EVELREERQRALARPLELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERN 209 (267)
T ss_pred hHhHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666777666666777777666666555557777888889999999999999998877776653
No 210
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=84.43 E-value=10 Score=32.94 Aligned_cols=69 Identities=20% Similarity=0.330 Sum_probs=37.9
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 024140 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRK 120 (272)
Q Consensus 41 ~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk 120 (272)
+--|+-.|-.++..+++++.+.........+....+ ..++..++.+|...|...+++...|+. ++|+
T Consensus 116 ~I~r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~----------~~~~~~~~~~ei~~lk~el~~~~~~~~---~Lkk 182 (192)
T PF05529_consen 116 VIRRVHSLIKELIKLEEKLEALKKQAESASEAAEKL----------LKEENKKLSEEIEKLKKELEKKEKEIE---ALKK 182 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh----------hhhhhhhhHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 456777777777776666654444443332222211 335556666666666666666555544 4455
Q ss_pred HH
Q 024140 121 TL 122 (272)
Q Consensus 121 ~L 122 (272)
+.
T Consensus 183 Q~ 184 (192)
T PF05529_consen 183 QS 184 (192)
T ss_pred HH
Confidence 43
No 211
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.34 E-value=9.9 Score=40.15 Aligned_cols=37 Identities=19% Similarity=0.277 Sum_probs=30.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESI 76 (272)
Q Consensus 40 A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~l 76 (272)
-|-.||-.||.|...||+.|+++..+..-|...++.+
T Consensus 104 ~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~ 140 (772)
T KOG0999|consen 104 YYLQKILELENELKQLRQELTNVQEENERLEKVHSDL 140 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3678999999999999999999998887777666544
No 212
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=84.20 E-value=40 Score=32.24 Aligned_cols=79 Identities=23% Similarity=0.378 Sum_probs=56.9
Q ss_pred hhhhhHHHHHHHHHHHH---HHHHH------------------HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 024140 44 RVSDLESEHSALRSQLA---EKDSR------------------IAELQSQIESIYSSLS---DKLGQAQADKERLSKENE 99 (272)
Q Consensus 44 RVs~LE~E~~~LR~~L~---EKd~~------------------i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~ 99 (272)
+|..|-.+-..||.+|. +|-.. |..+-+++-.||.+-. .|-..+..-..++..|+.
T Consensus 203 ~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~ 282 (309)
T PF09728_consen 203 QVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQ 282 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 66666667777777776 44322 2334445555555544 566666777788999999
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHH
Q 024140 100 ALTNTVRKLQRDVSKLEVFRKTL 122 (272)
Q Consensus 100 ~La~TvKkL~rDvaKLE~FKk~L 122 (272)
.+...+.++.+.+.+||++-|+|
T Consensus 283 ~~~~~~~~~~~k~~kLe~LcRaL 305 (309)
T PF09728_consen 283 KLEKELEKLKKKIEKLEKLCRAL 305 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998876
No 213
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=84.15 E-value=14 Score=37.56 Aligned_cols=49 Identities=22% Similarity=0.424 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------HHHHhhhHHHHHHHHHHHHhhccccc
Q 024140 82 DKLGQAQADKERLSKENEALTNT----------VRKLQRDVSKLEVFRKTLVQSLKDDE 130 (272)
Q Consensus 82 ~rL~~a~ee~~kL~~E~~~La~T----------vKkL~rDvaKLE~FKk~LmqSLq~d~ 130 (272)
..|.++.+.+..|..|-+.|... ++++..++..|+.=-+.+...+.+..
T Consensus 317 ~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~ 375 (569)
T PRK04778 317 DFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQE 375 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 56678888888999999988888 88888888888776666666655443
No 214
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=84.12 E-value=17 Score=34.71 Aligned_cols=66 Identities=17% Similarity=0.338 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 024140 50 SEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (272)
Q Consensus 50 ~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (272)
.|....+.+|..+..++..+++.+...|.++. .|+.+..++..+|..|...|..+|..+.--|.|+
T Consensus 193 ~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf 261 (269)
T PF05278_consen 193 EEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKF 261 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444444444444444444554444 5555556666666666666666666665444443
No 215
>PRK01156 chromosome segregation protein; Provisional
Probab=84.09 E-value=19 Score=38.11 Aligned_cols=14 Identities=29% Similarity=0.375 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 024140 91 KERLSKENEALTNT 104 (272)
Q Consensus 91 ~~kL~~E~~~La~T 104 (272)
...|..+...|..+
T Consensus 697 ~~~l~~~i~~l~~~ 710 (895)
T PRK01156 697 RARLESTIEILRTR 710 (895)
T ss_pred HHHHHHHHHHHHhh
Confidence 33333333444333
No 216
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=84.05 E-value=11 Score=41.90 Aligned_cols=77 Identities=19% Similarity=0.295 Sum_probs=42.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024140 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-------------DKLGQAQADKERLSKENEALTNTVRKLQRD 111 (272)
Q Consensus 45 Vs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~-------------~rL~~a~ee~~kL~~E~~~La~TvKkL~rD 111 (272)
.++|++....|+.|+.+++.+...+-+|+..|+..+. ..|+..-+..+.|.+.++.|...-++|..=
T Consensus 504 lsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t~qn~~~LEq~~n~lE~~~~elkk~ 583 (1195)
T KOG4643|consen 504 LSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKTTSQNGALLEQNNNDLELIHNELKKY 583 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3556666666666666666555544444444444333 344444455555666666555555555555
Q ss_pred HHHHHHHHHH
Q 024140 112 VSKLEVFRKT 121 (272)
Q Consensus 112 vaKLE~FKk~ 121 (272)
+.+|++++++
T Consensus 584 idaL~alrrh 593 (1195)
T KOG4643|consen 584 IDALNALRRH 593 (1195)
T ss_pred HHHHHHHHHH
Confidence 5666665554
No 217
>PRK01156 chromosome segregation protein; Provisional
Probab=84.04 E-value=15 Score=38.77 Aligned_cols=18 Identities=17% Similarity=0.508 Sum_probs=7.4
Q ss_pred HHHhhhHHHHHHHHHHHH
Q 024140 106 RKLQRDVSKLEVFRKTLV 123 (272)
Q Consensus 106 KkL~rDvaKLE~FKk~Lm 123 (272)
+++..-+..|+.|++.|.
T Consensus 729 ~~~~~~~~~l~~~r~~l~ 746 (895)
T PRK01156 729 KKIKKAIGDLKRLREAFD 746 (895)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 333334444444444333
No 218
>PRK04863 mukB cell division protein MukB; Provisional
Probab=83.97 E-value=29 Score=39.98 Aligned_cols=76 Identities=21% Similarity=0.319 Sum_probs=37.9
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024140 39 IAISTRVSDLESEHSALRSQLAEKDS------RIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQ 109 (272)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~L~EKd~------~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (272)
..+..|+..||.++..+++.+..+.+ .+..+...+..|+..+. .++..+.++..++.++...+...++.|.
T Consensus 317 ~ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLq 396 (1486)
T PRK04863 317 AELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELK 396 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777776666554332 22333333334443333 4444444444444444444444444444
Q ss_pred hhHHH
Q 024140 110 RDVSK 114 (272)
Q Consensus 110 rDvaK 114 (272)
..++.
T Consensus 397 eqLae 401 (1486)
T PRK04863 397 SQLAD 401 (1486)
T ss_pred HHHHH
Confidence 44433
No 219
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=83.92 E-value=4.5 Score=40.69 Aligned_cols=71 Identities=30% Similarity=0.412 Sum_probs=57.7
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 024140 38 SIAISTRVSDLESEHSALRSQLAEKD--SRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (272)
Q Consensus 38 s~A~atRVs~LE~E~~~LR~~L~EKd--~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDv 112 (272)
...+..|+..-|.|+..||.+|..|. ..-.||+.|+..|...|+ +.....+.|..||++|.-+..+|.+.+
T Consensus 357 ~s~~~~k~~~ke~E~q~lr~~l~~~~~~s~~~elE~rl~~lt~~Li----~KQ~~lE~l~~ek~al~lqlErl~~~l 429 (511)
T PF09787_consen 357 KSPLQLKLKEKESEIQKLRNQLSARASSSSWNELESRLTQLTESLI----QKQTQLESLGSEKNALRLQLERLETQL 429 (511)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHhccCCcHhHHHHHhhccHHHH----HHHHHHHHHHhhhhhccccHHHHHHHH
Confidence 55677888888999999999999877 334689999998887777 778888899999999988877776554
No 220
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=83.82 E-value=5.5 Score=32.45 Aligned_cols=44 Identities=16% Similarity=0.218 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 024140 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (272)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq~d 129 (272)
+..+++.+|+.+|+.|...|+.|+.|-+-+|..=|.=+.=..++
T Consensus 38 ~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR~~Lg~vk~g 81 (105)
T PRK00888 38 AQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERARNELGMVKPG 81 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHcCCCCCC
Confidence 56667778888888888888888877667776666555444443
No 221
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=83.81 E-value=27 Score=34.13 Aligned_cols=53 Identities=15% Similarity=0.260 Sum_probs=30.5
Q ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Q 024140 28 EQLDVARKITSIAISTRVSDLESEHSALRSQLA--EKDSRIAELQSQIESIYSSL 80 (272)
Q Consensus 28 EQLdlarkIts~A~atRVs~LE~E~~~LR~~L~--EKd~~i~~Lq~r~s~le~~l 80 (272)
++||-..+-...++..++..-+..+..|+..|. .-...+..++.++..+...|
T Consensus 267 q~Ld~l~~rL~~a~~~~L~~~~~~L~~L~~rL~~~~P~~~l~~~~q~L~~l~~rL 321 (438)
T PRK00286 267 QRLQQLQQRLARAMRRRLEQKRQRLDQLARRLKFQSPERLLAQQQQRLDRLQQRL 321 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHH
Confidence 355555555677777788777777777776663 22333444444444444433
No 222
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=83.79 E-value=14 Score=41.14 Aligned_cols=69 Identities=22% Similarity=0.368 Sum_probs=27.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS----DKLGQAQADKERLSKENEALTNTVRKL 108 (272)
Q Consensus 40 A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~----~rL~~a~ee~~kL~~E~~~La~TvKkL 108 (272)
++..+|..++.+++.--..+.++...+..|+++|..++.++. ..+.+..++.+.|.+|...|...+..|
T Consensus 348 ~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L 420 (1074)
T KOG0250|consen 348 DLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSL 420 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455444433333333333333333444444443331 333344444444444444444433333
No 223
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=83.77 E-value=5.3 Score=37.01 Aligned_cols=61 Identities=20% Similarity=0.322 Sum_probs=26.4
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 024140 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEA 100 (272)
Q Consensus 40 A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~ 100 (272)
+.-.||..||..+..-.+.+.|-...|.+||..|..|-.++. -.|.+..+++..|-.+.|.
T Consensus 37 ~~~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~ 100 (263)
T PRK10803 37 SVEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDS 100 (263)
T ss_pred chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666655554333333444444444444443333333 2222444444444444443
No 224
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=83.74 E-value=6.5 Score=28.75 Aligned_cols=35 Identities=31% Similarity=0.485 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 024140 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVFRK 120 (272)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk 120 (272)
....++++|.+|++.|...++.|..|-+.+|.+=|
T Consensus 28 ~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR 62 (80)
T PF04977_consen 28 ELQKEIEELKKENEELKEEIERLKNDPDYIEKVAR 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 44455567777777777777777667777777655
No 225
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=83.74 E-value=6.7 Score=38.12 Aligned_cols=73 Identities=21% Similarity=0.267 Sum_probs=47.3
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 024140 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-DKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (272)
Q Consensus 41 ~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~-~rL~~a~ee~~kL~~E~~~La~TvKkL~rDva 113 (272)
..-+...|..|+..||++|.|=.--|.-|+++++....... .-.+...++.++|..+-..+-.+..-|.+||.
T Consensus 77 sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~q 150 (319)
T PF09789_consen 77 SREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQ 150 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677899999999999999999999999999887766554 11111114444444444444444444444443
No 226
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=83.72 E-value=21 Score=32.95 Aligned_cols=38 Identities=24% Similarity=0.167 Sum_probs=25.4
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (272)
Q Consensus 43 tRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l 80 (272)
..|..||.|+..|+.....+...+..|+.....+...+
T Consensus 68 ~~le~Le~el~~l~~~~~~~~~~~~~lq~~~~~~~~~~ 105 (256)
T PF14932_consen 68 EDLEALEEELEALQEYKELYEQLRNKLQQLDSSLSQEL 105 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888888887777777777777765555444443
No 227
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=83.63 E-value=8.6 Score=28.99 Aligned_cols=47 Identities=17% Similarity=0.272 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 024140 65 RIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (272)
Q Consensus 65 ~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (272)
.|.+||.|++-+|..+. ...+...+.+++.+.|...++.|...|..+
T Consensus 5 Ri~~LE~~la~qe~~ie----~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 5 RIEELEIKLAFQEDTIE----ELNDVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444443333332 444455555555555555555555444433
No 228
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=83.62 E-value=36 Score=31.24 Aligned_cols=84 Identities=19% Similarity=0.322 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHH-HHHHHHHHHHHHHHHH
Q 024140 32 VARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS------DKLGQAQ-ADKERLSKENEALTNT 104 (272)
Q Consensus 32 larkIts~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~------~rL~~a~-ee~~kL~~E~~~La~T 104 (272)
-.+.-+-..|..++..|...+..-...+..-...+.+++.++..|+..|. +.|.... +-...+..++..+...
T Consensus 184 ~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~ 263 (312)
T PF00038_consen 184 KNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAE 263 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHh
Confidence 33334456677777777776666555555555556666666666655554 1121111 1123445555555555
Q ss_pred HHHHhhhHHHH
Q 024140 105 VRKLQRDVSKL 115 (272)
Q Consensus 105 vKkL~rDvaKL 115 (272)
|..|...+++|
T Consensus 264 i~~le~el~~l 274 (312)
T PF00038_consen 264 IAELEEELAEL 274 (312)
T ss_dssp HHHHHHHHHHH
T ss_pred hhccchhHHHH
Confidence 55555555554
No 229
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=83.53 E-value=13 Score=33.08 Aligned_cols=34 Identities=32% Similarity=0.407 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhhHHHH
Q 024140 82 DKLGQAQADKERLSKENEAL-------TNTVRKLQRDVSKL 115 (272)
Q Consensus 82 ~rL~~a~ee~~kL~~E~~~L-------a~TvKkL~rDvaKL 115 (272)
.||.+-.+++..|..-|.-| -.+-..|..|+.||
T Consensus 67 ~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~kl 107 (182)
T PF15035_consen 67 IRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKL 107 (182)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666666666666666 34555666666665
No 230
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=83.46 E-value=39 Score=36.42 Aligned_cols=79 Identities=18% Similarity=0.235 Sum_probs=55.3
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH---HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 024140 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESI---YSS---LS-DKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (272)
Q Consensus 40 A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~l---e~~---l~-~rL~~a~ee~~kL~~E~~~La~TvKkL~rDv 112 (272)
+|-++...--.|++.||++++||+..+.-|++++..- +.. ++ .+|+.+.|..+.-.++++....-.+.+....
T Consensus 228 qye~klkstk~e~a~L~Eq~~eK~~e~~rl~~~lv~~~~~d~e~~~~rd~~lk~a~eslm~ane~kdr~ie~lr~~ln~y 307 (861)
T KOG1899|consen 228 QYETKLKSTKGEMAPLREQRSEKNDEEMRLLRTLVQRLMADGEHKSLRDNTLKNALESLMRANEQKDRFIESLRNYLNNY 307 (861)
T ss_pred HHHhhcccccchhhhHHHHHhhhhhHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHhhchhhhhHHHHHHHHhhhh
Confidence 3334444444568999999999999999988776531 222 22 6888888888888888888777777776666
Q ss_pred HHHHHH
Q 024140 113 SKLEVF 118 (272)
Q Consensus 113 aKLE~F 118 (272)
.|....
T Consensus 308 ~k~~~i 313 (861)
T KOG1899|consen 308 DKNAQI 313 (861)
T ss_pred hhhhhh
Confidence 555444
No 231
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=83.36 E-value=9.4 Score=31.83 Aligned_cols=38 Identities=18% Similarity=0.326 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 67 AELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKL 108 (272)
Q Consensus 67 ~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL 108 (272)
..|-+.+..|...++ ...+||+.|.-||+.|-..+.++
T Consensus 18 ~~l~~el~~LK~~~~----el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 18 GVLLKELGALKKQLA----ELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344444444333 77888999999998887777655
No 232
>PRK12704 phosphodiesterase; Provisional
Probab=83.19 E-value=39 Score=34.61 Aligned_cols=36 Identities=25% Similarity=0.406 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 024140 92 ERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLK 127 (272)
Q Consensus 92 ~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq 127 (272)
.+|.+....|...-+.|.+--..++.++....+-|.
T Consensus 110 ~eL~~re~~Le~re~eLe~~~~~~~~~~~~~~~~l~ 145 (520)
T PRK12704 110 EELEKKEKELEQKQQELEKKEEELEELIEEQLQELE 145 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333443333344444444444443
No 233
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=83.06 E-value=5.6 Score=43.92 Aligned_cols=31 Identities=26% Similarity=0.533 Sum_probs=18.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIE 74 (272)
Q Consensus 44 RVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s 74 (272)
-++.|+...+.|..++.+-+..|.+|+++|.
T Consensus 411 E~~eL~r~kE~Lsr~~d~aEs~iadlkEQVD 441 (1243)
T KOG0971|consen 411 ELEELRRQKERLSRELDQAESTIADLKEQVD 441 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555556666666666666666666654
No 234
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=82.98 E-value=9.7 Score=42.39 Aligned_cols=39 Identities=21% Similarity=0.231 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 024140 84 LGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (272)
Q Consensus 84 L~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~L 122 (272)
+.....++.+...|+....-.+++|..+|.|++.=++..
T Consensus 887 i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~ 925 (1174)
T KOG0933|consen 887 ISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANA 925 (1174)
T ss_pred HhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHH
Confidence 334455667888888999999999999999998766554
No 235
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=82.98 E-value=7.8 Score=33.09 Aligned_cols=65 Identities=28% Similarity=0.373 Sum_probs=34.9
Q ss_pred HHHhcCCCCchhhHHHHHHHH---HHHHHHhhhhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Q 024140 17 EVLQVLPSDPFEQLDVARKIT---SIAISTRVSDLESEHSALRSQLA--EKDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 17 eil~vLP~DP~EQLdlarkIt---s~A~atRVs~LE~E~~~LR~~L~--EKd~~i~~Lq~r~s~le~~l~ 81 (272)
+.+.+++.+-...||--+.-. -..+...+..|++|+..|+..+. |-...|.+|++.+..|+..|.
T Consensus 64 ~~~~~~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~ 133 (169)
T PF07106_consen 64 DELEVPSPEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLE 133 (169)
T ss_pred cccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444445555442221 24556666666666666666663 555566666666666665443
No 236
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=82.95 E-value=9.7 Score=35.86 Aligned_cols=37 Identities=22% Similarity=0.279 Sum_probs=25.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 45 Vs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~ 81 (272)
-.+.|.+++.|+..+..+|+.|..||+.+-..|..|.
T Consensus 69 q~k~e~~m~~Lea~VEkrD~~IQqLqk~LK~aE~iLt 105 (272)
T KOG4552|consen 69 QQKREQLMRTLEAHVEKRDEVIQQLQKNLKSAEVILT 105 (272)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777777777777777777777776665
No 237
>PRK00736 hypothetical protein; Provisional
Probab=82.86 E-value=9.6 Score=28.91 Aligned_cols=41 Identities=15% Similarity=0.229 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024140 65 RIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQ 109 (272)
Q Consensus 65 ~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (272)
.|.+||.|+.-.|..+. ...+...+.+++.+.|...++.|.
T Consensus 6 Ri~~LE~klafqe~tie----~Ln~~v~~Qq~~i~~L~~ql~~L~ 46 (68)
T PRK00736 6 RLTELEIRVAEQEKTIE----ELSDQLAEQWKTVEQMRKKLDALT 46 (68)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555554433 334444444444444444444443
No 238
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=82.71 E-value=31 Score=34.22 Aligned_cols=52 Identities=19% Similarity=0.133 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Q 024140 29 QLDVARKITSIAISTRVSDLESEHSALRSQLA--EKDSRIAELQSQIESIYSSL 80 (272)
Q Consensus 29 QLdlarkIts~A~atRVs~LE~E~~~LR~~L~--EKd~~i~~Lq~r~s~le~~l 80 (272)
+|+-...-...|+..++...+.++..|+..|. .-...+...+.++..+...|
T Consensus 263 rLd~l~~RL~~am~~~L~~~r~rL~~L~~RL~~~~P~~~L~~~~qrLd~L~~RL 316 (432)
T TIGR00237 263 RLDGFNVRLHRAFDTLLHQKKARLEQLVASLQRQHPQNKLALQQLQFEKLEKRK 316 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 45555555677888888888888887777654 22233444444444444333
No 239
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=82.62 E-value=22 Score=31.98 Aligned_cols=24 Identities=21% Similarity=0.202 Sum_probs=12.2
Q ss_pred ChhHHHhcCCCCchhhHHHHHHHH
Q 024140 14 LPEEVLQVLPSDPFEQLDVARKIT 37 (272)
Q Consensus 14 lp~eil~vLP~DP~EQLdlarkIt 37 (272)
|-++|...==+||-..|+.=.+..
T Consensus 55 l~e~v~~l~idd~~~~f~~~~~tl 78 (190)
T PF05266_consen 55 LAEKVKKLQIDDSRSSFESLMKTL 78 (190)
T ss_pred HHHHHHHcccCCcHHHHHHHHHHH
Confidence 344454444556666555544443
No 240
>smart00338 BRLZ basic region leucin zipper.
Probab=82.58 E-value=11 Score=27.37 Aligned_cols=28 Identities=36% Similarity=0.617 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 024140 89 ADKERLSKENEALTNTVRKLQRDVSKLE 116 (272)
Q Consensus 89 ee~~kL~~E~~~La~TvKkL~rDvaKLE 116 (272)
.+...|..||..|...|..|..++..|+
T Consensus 33 ~~~~~L~~en~~L~~~~~~l~~e~~~lk 60 (65)
T smart00338 33 RKVEQLEAENERLKKEIERLRRELEKLK 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555554
No 241
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=82.41 E-value=17 Score=33.87 Aligned_cols=72 Identities=19% Similarity=0.285 Sum_probs=39.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 024140 47 DLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKT 121 (272)
Q Consensus 47 ~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~ 121 (272)
.++.-+-.+-++|.+++..|.+.+.|...++.++..--....+....|..+..++...++.|. .||+.-|+.
T Consensus 187 ~~~~~ilq~d~~L~~~ek~~~~~~~k~e~~e~e~~~l~e~~~~~~~~le~~~~~~ee~~~~L~---ekme~e~~~ 258 (297)
T PF02841_consen 187 SMENSILQADQQLTEKEKEIEEEQAKAEAAEKEKEKLEEKQKEQEQMLEQQERSYEEHIKQLK---EKMEEEREQ 258 (297)
T ss_dssp HHHHHHHHH-TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 445555666667777777777777777777766651112223334445555555555555554 344444443
No 242
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=82.36 E-value=17 Score=37.12 Aligned_cols=11 Identities=27% Similarity=0.389 Sum_probs=5.3
Q ss_pred HHHHHHHHHhh
Q 024140 115 LEVFRKTLVQS 125 (272)
Q Consensus 115 LE~FKk~LmqS 125 (272)
|..+||.|+.+
T Consensus 427 L~~ikr~l~k~ 437 (569)
T PRK04778 427 LHEIKRYLEKS 437 (569)
T ss_pred HHHHHHHHHHc
Confidence 34455555544
No 243
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=82.24 E-value=32 Score=29.71 Aligned_cols=81 Identities=20% Similarity=0.259 Sum_probs=59.6
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 024140 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKT 121 (272)
Q Consensus 42 atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~ 121 (272)
...+..+..++..|-.++.+=...+.+|++++...+ .+-....+.+++|.+|...|...+..+...|.-.+.+ ..
T Consensus 6 ~~~L~~~~~~~~~ll~~~~~~~~~l~~l~~~~~~Vs----~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~L-d~ 80 (157)
T PF04136_consen 6 LDYLQQYREECDQLLDQTDEILDQLDELQEQYNSVS----EKTNSLHEACEQLLEEQTRLEELAEEISEKLQYFEEL-DP 80 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhH-HH
Confidence 344555556666666666666666666666665555 4455788899999999999999999999999888877 56
Q ss_pred HHhhcc
Q 024140 122 LVQSLK 127 (272)
Q Consensus 122 LmqSLq 127 (272)
+++.|+
T Consensus 81 itr~Ln 86 (157)
T PF04136_consen 81 ITRRLN 86 (157)
T ss_pred HHHHHc
Confidence 777775
No 244
>PRK04325 hypothetical protein; Provisional
Probab=82.17 E-value=7.4 Score=29.96 Aligned_cols=12 Identities=33% Similarity=0.285 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 024140 66 IAELQSQIESIY 77 (272)
Q Consensus 66 i~~Lq~r~s~le 77 (272)
|.+||.|++-.|
T Consensus 11 i~~LE~klAfQE 22 (74)
T PRK04325 11 ITELEIQLAFQE 22 (74)
T ss_pred HHHHHHHHHHHH
Confidence 344444443333
No 245
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=82.17 E-value=28 Score=30.65 Aligned_cols=105 Identities=17% Similarity=0.225 Sum_probs=49.3
Q ss_pred hhHHHhcCCCCchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHH
Q 024140 15 PEEVLQVLPSDPFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRI------------AELQSQIESIYSSLSD 82 (272)
Q Consensus 15 p~eil~vLP~DP~EQLdlarkIts~A~atRVs~LE~E~~~LR~~L~EKd~~i------------~~Lq~r~s~le~~l~~ 82 (272)
|..+|--.=.|--++|.=+++-+..+++.+. .||.++..+...+.+-.... .+.-.+...++.
T Consensus 24 P~~~l~q~ird~e~~l~~a~~~~a~~~a~~~-~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~---- 98 (221)
T PF04012_consen 24 PEKMLEQAIRDMEEQLRKARQALARVMANQK-RLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEE---- 98 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH----
Confidence 5555555555666677666666655544432 45555555555554333222 111112222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 024140 83 KLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQ 124 (272)
Q Consensus 83 rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~Lmq 124 (272)
.+....+....+...-+.|...+++|...+..|+.=+..|+-
T Consensus 99 ~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~a 140 (221)
T PF04012_consen 99 QAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKA 140 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222333334444444445555555555555555554444443
No 246
>PF14282 FlxA: FlxA-like protein
Probab=82.09 E-value=8.2 Score=31.34 Aligned_cols=59 Identities=27% Similarity=0.424 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 024140 63 DSRIAELQSQIESIYSSLSDKLGQA-QADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (272)
Q Consensus 63 d~~i~~Lq~r~s~le~~l~~rL~~a-~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~L 122 (272)
+..|+.|++++..|+..|. .|... .-....-.+....|...+.-|...++.|..=+..-
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~-~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~ 77 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQ-ELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQ 77 (106)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666654 22221 10122223445556666666666666665544433
No 247
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=82.00 E-value=44 Score=34.14 Aligned_cols=35 Identities=26% Similarity=0.363 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 024140 92 ERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSL 126 (272)
Q Consensus 92 ~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSL 126 (272)
.+|.+....|...-+.|..-..+++.+.....+-|
T Consensus 104 ~~Le~ke~~L~~re~eLee~~~e~~~~~~~~~~~l 138 (514)
T TIGR03319 104 ENLEKKEKELSNKEKNLDEKEEELEELIAEQREEL 138 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444444444333
No 248
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=81.93 E-value=11 Score=31.67 Aligned_cols=14 Identities=43% Similarity=0.572 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHH
Q 024140 68 ELQSQIESIYSSLS 81 (272)
Q Consensus 68 ~Lq~r~s~le~~l~ 81 (272)
+|+.++..|+..|.
T Consensus 13 el~n~La~Le~slE 26 (107)
T PF09304_consen 13 ELQNRLASLERSLE 26 (107)
T ss_dssp -HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44455555555443
No 249
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=81.88 E-value=43 Score=30.90 Aligned_cols=14 Identities=29% Similarity=0.294 Sum_probs=9.4
Q ss_pred CCchhhHHHHHHHH
Q 024140 24 SDPFEQLDVARKIT 37 (272)
Q Consensus 24 ~DP~EQLdlarkIt 37 (272)
.||..+|+-+++=.
T Consensus 23 EDp~~~l~Q~ird~ 36 (225)
T COG1842 23 EDPEKMLEQAIRDM 36 (225)
T ss_pred cCHHHHHHHHHHHH
Confidence 47887777776543
No 250
>PF06246 Isy1: Isy1-like splicing family; InterPro: IPR009360 Isy1 protein is important in the optimisation of splicing [].; PDB: 1X4T_A.
Probab=81.86 E-value=6.1 Score=37.14 Aligned_cols=58 Identities=12% Similarity=0.172 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024140 52 HSALRSQLAEKDSRIAELQSQIESIYSSLS--DKLGQAQADKERLSKENEALTNTVRKLQ 109 (272)
Q Consensus 52 ~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~--~rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (272)
|..|++-.-=+-..|.|+-.+|+.+...-- -+++..+++++||.+|+..-...|+.|.
T Consensus 39 v~~l~~ae~WR~~ii~EIs~kv~~Iqd~~L~E~~IRdLNDeINkL~rEK~~WE~rI~~LG 98 (255)
T PF06246_consen 39 VKSLPEAEKWRRQIIKEISRKVTRIQDPSLGEFQIRDLNDEINKLIREKRHWERRIKELG 98 (255)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHH--S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344444444455667777777777665433 7889999999999999999999999987
No 251
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=81.76 E-value=7.6 Score=28.39 Aligned_cols=29 Identities=28% Similarity=0.404 Sum_probs=12.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 46 SDLESEHSALRSQLAEKDSRIAELQSQIE 74 (272)
Q Consensus 46 s~LE~E~~~LR~~L~EKd~~i~~Lq~r~s 74 (272)
..+..|+..|+.++++-...+.+|++++.
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~ 48 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIE 48 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443333
No 252
>PRK00846 hypothetical protein; Provisional
Probab=81.73 E-value=9.7 Score=30.04 Aligned_cols=10 Identities=10% Similarity=0.368 Sum_probs=4.3
Q ss_pred HHHHHHHHHH
Q 024140 69 LQSQIESIYS 78 (272)
Q Consensus 69 Lq~r~s~le~ 78 (272)
|++|+..||.
T Consensus 11 le~Ri~~LE~ 20 (77)
T PRK00846 11 LEARLVELET 20 (77)
T ss_pred HHHHHHHHHH
Confidence 3344444443
No 253
>PRK10869 recombination and repair protein; Provisional
Probab=81.71 E-value=12 Score=38.26 Aligned_cols=55 Identities=9% Similarity=0.033 Sum_probs=30.7
Q ss_pred CCchhhHHHHHHHHH-HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 24 SDPFEQLDVARKITS-IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYS 78 (272)
Q Consensus 24 ~DP~EQLdlarkIts-~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~ 78 (272)
-+|..||++--.+.. ..+...+..+-.+...++.+|.+......+.++++.-|+.
T Consensus 137 l~~~~~~~lLD~~~~~~~~~~~~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~f 192 (553)
T PRK10869 137 LKPEHQKTLLDAYANETSLLQEMRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQY 192 (553)
T ss_pred cCHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 489999998777664 4455555555555555555554444444334334333333
No 254
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=81.71 E-value=25 Score=28.02 Aligned_cols=39 Identities=13% Similarity=0.293 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Q 024140 87 AQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQS 125 (272)
Q Consensus 87 a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqS 125 (272)
..++..+|..+++.|++.+.+......+||.--+-+-+-
T Consensus 37 ~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~r 75 (89)
T PF13747_consen 37 LEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRR 75 (89)
T ss_pred HHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555444455555544444433
No 255
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=81.65 E-value=0.45 Score=50.80 Aligned_cols=91 Identities=26% Similarity=0.411 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 38 SIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-----------DKLGQAQADKERLSKENEALTNTVR 106 (272)
Q Consensus 38 s~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~-----------~rL~~a~ee~~kL~~E~~~La~TvK 106 (272)
-.++..++..||.|+..||.++.|-.....+|+.+++.+..+|. .+.....+-..+|..+-..|...+.
T Consensus 259 k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le 338 (859)
T PF01576_consen 259 KQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLE 338 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788899999999999999999999999999999999998887 2333445566788888888888999
Q ss_pred HHhhhHHHHHHHHHHHHhhccc
Q 024140 107 KLQRDVSKLEVFRKTLVQSLKD 128 (272)
Q Consensus 107 kL~rDvaKLE~FKk~LmqSLq~ 128 (272)
.++..+++||.-|+.|..=+.|
T Consensus 339 ~~~~~~~~LeK~k~rL~~EleD 360 (859)
T PF01576_consen 339 EANAKVSSLEKTKKRLQGELED 360 (859)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988887655443
No 256
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=81.47 E-value=22 Score=35.57 Aligned_cols=37 Identities=11% Similarity=0.202 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 024140 82 DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVF 118 (272)
Q Consensus 82 ~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~F 118 (272)
.++.++..+..+|..+...|...+.+|.+++++|..-
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~ 174 (525)
T TIGR02231 138 SEIERLLTEDREAERRIRELEKQLSELQNELNALLTG 174 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 5666666777777777777777777777777777654
No 257
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=81.30 E-value=10 Score=37.01 Aligned_cols=54 Identities=15% Similarity=0.302 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 024140 65 RIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFR 119 (272)
Q Consensus 65 ~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FK 119 (272)
-+..|++++..++..+ ++|...++++.|..+.+..|.+++.++.+.++.++.|.
T Consensus 243 ~~~~l~~~~~~~~~~i-~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~~~~~~ 296 (406)
T PF02388_consen 243 YLESLQEKLEKLEKEI-EKLEEKLEKNPKKKNKLKELEEQLASLEKRIEEAEELI 296 (406)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666655 35555555666777778888888888888888887773
No 258
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=81.18 E-value=22 Score=38.68 Aligned_cols=24 Identities=21% Similarity=0.227 Sum_probs=11.2
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHhh
Q 024140 102 TNTVRKLQRDVSKLEVFRKTLVQS 125 (272)
Q Consensus 102 a~TvKkL~rDvaKLE~FKk~LmqS 125 (272)
.++..+-|+=...|+.|||+|.+.
T Consensus 212 maAle~kn~L~~e~~s~kk~l~~~ 235 (916)
T KOG0249|consen 212 MAALEDKNRLEQELESVKKQLEEM 235 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444455555555443
No 259
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=81.11 E-value=18 Score=39.89 Aligned_cols=51 Identities=22% Similarity=0.260 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024140 61 EKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRD 111 (272)
Q Consensus 61 EKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rD 111 (272)
++++.+.+|.+++..+.++.. .|.....+...+|..|...|.-.+++|.+.
T Consensus 463 ~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~ 516 (980)
T KOG0980|consen 463 DVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRT 516 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555554444443 222233333333344444444444444443
No 260
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=81.00 E-value=23 Score=27.22 Aligned_cols=17 Identities=24% Similarity=0.335 Sum_probs=6.9
Q ss_pred HHHHHHHHhhhHHHHHH
Q 024140 101 LTNTVRKLQRDVSKLEV 117 (272)
Q Consensus 101 La~TvKkL~rDvaKLE~ 117 (272)
|....+.|+.++++|..
T Consensus 77 l~~q~~~l~~~l~~l~~ 93 (127)
T smart00502 77 LEQQLESLTQKQEKLSH 93 (127)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444444433
No 261
>smart00338 BRLZ basic region leucin zipper.
Probab=80.79 E-value=8.2 Score=28.15 Aligned_cols=39 Identities=28% Similarity=0.440 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 61 EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTN 103 (272)
Q Consensus 61 EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~ 103 (272)
.|..+|.+|+.++..|+.+.. ....+...|..|+..|.+
T Consensus 23 rKk~~~~~Le~~~~~L~~en~----~L~~~~~~l~~e~~~lk~ 61 (65)
T smart00338 23 RKKAEIEELERKVEQLEAENE----RLKKEIERLRRELEKLKS 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 456778888888877776554 444444445555544443
No 262
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=80.48 E-value=28 Score=27.88 Aligned_cols=61 Identities=21% Similarity=0.271 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 024140 67 AELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLK 127 (272)
Q Consensus 67 ~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq 127 (272)
..|++.+..++.-|. .+...|.....+=.+.+.....-+++|..++..|...+..+..-|+
T Consensus 42 ~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~ 105 (126)
T PF13863_consen 42 QELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLE 105 (126)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666 7778888888888888888888888888888888888777766554
No 263
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=80.32 E-value=28 Score=27.79 Aligned_cols=32 Identities=22% Similarity=0.313 Sum_probs=16.3
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 024140 39 IAISTRVSDLESEHSALRSQLAEKDSRIAELQ 70 (272)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq 70 (272)
.+.+.|..+|...+..|+..+.+.+....+|+
T Consensus 31 ~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~ 62 (99)
T PF10046_consen 31 KATSLKYKKMKDIAAGLEKNLEDLNQKYEELQ 62 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455565555555555555544444443333
No 264
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=80.19 E-value=39 Score=34.37 Aligned_cols=72 Identities=18% Similarity=0.300 Sum_probs=51.0
Q ss_pred CCCCChhHHHhc---CCCCc-----------hhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH--HHHHHHHHHHHHH
Q 024140 10 STFDLPEEVLQV---LPSDP-----------FEQLDVARKITSIAISTRVSDLESEHSALRSQLA--EKDSRIAELQSQI 73 (272)
Q Consensus 10 ~dF~lp~eil~v---LP~DP-----------~EQLdlarkIts~A~atRVs~LE~E~~~LR~~L~--EKd~~i~~Lq~r~ 73 (272)
.||-|.|-|.-+ -|+.. -+||+-.++...+|+..++.+-+..+..|+..+. .-++.+..-+.++
T Consensus 236 tD~tL~DfVAD~RApTPTaAAE~~vP~~~el~~~l~~~~~rL~~~~~~~l~~~~~~l~~l~~~l~~~~p~~~l~~~~q~l 315 (440)
T COG1570 236 TDFTLADFVADLRAPTPTAAAELVVPDSAELLQQLDQLQRRLHRALRRLLDQKKQRLEHLARRLQFRSPERLLSEQQQRL 315 (440)
T ss_pred CCccHHHhhhhccCCCchHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 478887766543 23322 3466777777889999999998988888888887 6667777777777
Q ss_pred HHHHHHHH
Q 024140 74 ESIYSSLS 81 (272)
Q Consensus 74 s~le~~l~ 81 (272)
..++..|.
T Consensus 316 d~~~~rL~ 323 (440)
T COG1570 316 DELAIRLR 323 (440)
T ss_pred HHHHHHHH
Confidence 66665555
No 265
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=80.19 E-value=11 Score=29.45 Aligned_cols=65 Identities=26% Similarity=0.314 Sum_probs=40.3
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024140 38 SIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-DKLGQAQADKERLSKENEALTNTVRKLQ 109 (272)
Q Consensus 38 s~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~-~rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (272)
.-|++.-+-.||.|++.|+-.+.+ |++++..++.+.. .+=+....+...|.++-..=+++|.+|.
T Consensus 12 ~~~Ls~vl~~LqDE~~hm~~e~~~-------L~~~~~~~d~s~~~~~R~~L~~~l~~lv~~mE~K~dQI~~L~ 77 (79)
T PF06657_consen 12 GEALSEVLKALQDEFGHMKMEHQE-------LQDEYKQMDPSLGRRKRRDLEQELEELVKRMEAKADQIYKLY 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhcccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 357788888999999999887765 4445555555544 2223344455556666665566665553
No 266
>PF08898 DUF1843: Domain of unknown function (DUF1843); InterPro: IPR014994 This domain is found in functionally uncharacterised proteins. It can be found independently or at the C terminus of the protein.
Probab=80.19 E-value=6 Score=29.46 Aligned_cols=36 Identities=22% Similarity=0.364 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 024140 82 DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (272)
Q Consensus 82 ~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (272)
++++.....-++-..+...|...+.+|+.+++|||.
T Consensus 17 a~MK~l~~~aeq~L~~~~~i~~al~~Lk~EIaklE~ 52 (53)
T PF08898_consen 17 AQMKALAAQAEQQLAEAGDIAAALEKLKAEIAKLEA 52 (53)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHhc
Confidence 677777777788888999999999999999999985
No 267
>PF11740 KfrA_N: Plasmid replication region DNA-binding N-term; InterPro: IPR021104 The KfrA family of protiens are encoded on plasmids, generally in or near gene clusters invloved in stable inheritance functions. These proteins are thought to form an all-helical structure, consisting of an N-terminal helix-turn-helix DNA binding domain and an extended coiled-coil tail. The best-characterised KfrA protein, encoded on the broad host-range Plasmid RK2, is a site-specific DNA-binding protein whose operator overlaps its own promoter. The DNA-binding domain is essential for function, while the coiled-coil domain is probably responsible for formation of multimers, and may provide an example of a bridge to host structures required for plasmid partitioning []. This entry represents the N-terminal DNA-binding domain.
Probab=80.18 E-value=16 Score=29.02 Aligned_cols=63 Identities=24% Similarity=0.364 Sum_probs=42.3
Q ss_pred CCCChhHHHhcCCCCchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 11 TFDLPEEVLQVLPSDPFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (272)
Q Consensus 11 dF~lp~eil~vLP~DP~EQLdlarkIts~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l 80 (272)
..+||++|...+ .++...+...|...-...|+.+...+...+.+-+....++..++..++.++
T Consensus 56 ~~~lP~~l~~~~-------~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~ 118 (120)
T PF11740_consen 56 APDLPEALQDAL-------AELMARLWEAAQEEAEEELEAARAELEQERAAAEAELAEAEAQAEELEAEL 118 (120)
T ss_pred ccCCChhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555554422 356666777777777777777777777777777777777777777776654
No 268
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=80.17 E-value=37 Score=36.39 Aligned_cols=50 Identities=18% Similarity=0.283 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 31 DVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 31 dlarkIts~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~ 81 (272)
+-|+++....- .++.+|=.++...|.++.++.+.++.+++++..+..+|.
T Consensus 505 ~~A~~~~~~~~-~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~ 554 (782)
T PRK00409 505 EEAKKLIGEDK-EKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELE 554 (782)
T ss_pred HHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555543211 144444444444444444444444444444444443333
No 269
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=80.12 E-value=25 Score=27.03 Aligned_cols=64 Identities=22% Similarity=0.311 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 024140 52 HSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (272)
Q Consensus 52 ~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (272)
+.+|++-+.+=.+.+..|++++..+-.+.. .......++.+.-.+.-+.+...|+.+..-|..|
T Consensus 21 l~~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g~~v~~l 87 (90)
T PF06103_consen 21 LKKLKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLGESVSEL 87 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 344555555555566666666555555544 3333444444444444555555555555555444
No 270
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=80.09 E-value=38 Score=38.39 Aligned_cols=67 Identities=16% Similarity=0.221 Sum_probs=32.1
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024140 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL-------SDKLGQAQADKERLSKENEALTNTVRKLQ 109 (272)
Q Consensus 43 tRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l-------~~rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (272)
.++..++.++...++.+.+-...+..++.++..++..+ ..+|.++.++...+.+|...+...+..+.
T Consensus 882 ~~le~ae~~l~~~~~e~~~~~~e~~~a~~~l~~l~e~l~~~~eel~a~L~e~r~rL~~l~~el~~~~~~~~~a~ 955 (1353)
T TIGR02680 882 ARAARAESDAREAAEDAAEARAEAEEASLRLRTLEESVGAMVDEIRARLAETRAALASGGRELPRLAEALATAE 955 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444333 35555666666666655555554443333
No 271
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=80.08 E-value=48 Score=30.35 Aligned_cols=65 Identities=18% Similarity=0.306 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 024140 49 ESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-------DKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (272)
Q Consensus 49 E~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~-------~rL~~a~ee~~kL~~E~~~La~TvKkL~rDva 113 (272)
|.|+..|+.+..++...+.++..=+..+|..+. -.-.....+..++..|++.+..-+..+.+.++
T Consensus 22 E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfs 93 (207)
T PF05010_consen 22 EEEEQELKKKYEELHKENQEMRKIMEEYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLNSLEKSFS 93 (207)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHH
Confidence 345555555555555554444444444444333 22223344555666666666665555554443
No 272
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=80.06 E-value=23 Score=30.54 Aligned_cols=30 Identities=17% Similarity=0.220 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 51 EHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (272)
Q Consensus 51 E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l 80 (272)
+...||..+......+...+..+..+..+|
T Consensus 20 ~~~~l~~~~~~a~~~~~~~~~~l~~~~~qL 49 (135)
T TIGR03495 20 RLRNARADLERANRVLKAQQAELASKANQL 49 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 334455555555555555544444444444
No 273
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=80.00 E-value=13 Score=41.35 Aligned_cols=70 Identities=29% Similarity=0.385 Sum_probs=50.9
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 024140 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (272)
Q Consensus 42 atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (272)
..+...|..|+..|+..+.+|+++|.+|..-+.... +|+.....++..|.++++.|..+=|.|-|.=.+|
T Consensus 410 ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~----~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l 479 (1200)
T KOG0964|consen 410 KEQENILQKEIEDLESELKEKLEEIKELESSINETK----GRMEEFDAENTELKRELDELQDKRKELWREEKKL 479 (1200)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677888999999999999999988876666444 4555666666666777777776666666666665
No 274
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=79.96 E-value=29 Score=27.77 Aligned_cols=23 Identities=9% Similarity=0.329 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024140 86 QAQADKERLSKENEALTNTVRKL 108 (272)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL 108 (272)
...++|.+|..|..+-...++.|
T Consensus 50 ~L~~en~qLk~E~~~WqerLr~L 72 (79)
T PRK15422 50 ELERENNHLKEQQNGWQERLQAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777777777666665
No 275
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=79.65 E-value=44 Score=29.66 Aligned_cols=21 Identities=14% Similarity=0.340 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024140 61 EKDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 61 EKd~~i~~Lq~r~s~le~~l~ 81 (272)
++...+..+++|+..-+..|.
T Consensus 75 ~~~~el~~~E~rl~~rE~~L~ 95 (201)
T PF12072_consen 75 ERRKELQRLEKRLQQREEQLD 95 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555554444
No 276
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=79.61 E-value=25 Score=27.25 Aligned_cols=54 Identities=15% Similarity=0.177 Sum_probs=38.9
Q ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 28 EQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 28 EQLdlarkIts~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~ 81 (272)
-||--|..-..-+|..+-...+.....|+..+..-.+..+.|.++|..|...+.
T Consensus 6 ~qLl~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~ 59 (70)
T PF04899_consen 6 KQLLSALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQ 59 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 366666666677777777777777777777777777777777777777766664
No 277
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=79.59 E-value=54 Score=30.65 Aligned_cols=93 Identities=20% Similarity=0.289 Sum_probs=45.3
Q ss_pred CchhhHHHHHHHHHHHHHHhhhhhHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 25 DPFEQLDVARKITSIAISTRVSDLESE-----------HSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKER 93 (272)
Q Consensus 25 DP~EQLdlarkIts~A~atRVs~LE~E-----------~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~k 93 (272)
+|++.+.-+.-..+.++...+..|+.. +..||.-+.+++..-.+|+.+...+...-.+| .++.++..+
T Consensus 110 ~~L~~~a~~~d~~~~~~~~~~~~l~~~f~~~Lkeyv~y~~slK~vlk~R~~~Q~~le~k~e~l~k~~~dr-~~~~~ev~~ 188 (243)
T cd07666 110 DSLKGMASCIDRCCKATDKRMKGLSEQLLPVIHEYVLYSETLMGVIKRRDQIQAELDSKVEALANKKADR-DLLKEEIEK 188 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHH
Confidence 455555444444444555544444433 66677777777766666665555544421123 233333333
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 024140 94 LSKENEALTNTVRKLQRDVSKLEVFRKT 121 (272)
Q Consensus 94 L~~E~~~La~TvKkL~rDvaKLE~FKk~ 121 (272)
|...-....+ .+..|+.+.+..|+.
T Consensus 189 ~e~kve~a~~---~~k~e~~Rf~~~k~~ 213 (243)
T cd07666 189 LEDKVECANN---ALKADWERWKQNMQT 213 (243)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 3333333322 244666665554443
No 278
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=79.42 E-value=20 Score=35.28 Aligned_cols=28 Identities=14% Similarity=0.462 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 024140 89 ADKERLSKENEALTNTVRKLQRDVSKLE 116 (272)
Q Consensus 89 ee~~kL~~E~~~La~TvKkL~rDvaKLE 116 (272)
+...+|.+.+..|...+++|..++..|+
T Consensus 375 ~~~~~l~~~~~~l~~~~~~l~~~~~~l~ 402 (451)
T PF03961_consen 375 EQLKKLKEKKKELKEELKELKEELKELK 402 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555544444443
No 279
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=79.41 E-value=24 Score=27.84 Aligned_cols=76 Identities=24% Similarity=0.347 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 024140 50 SEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSL 126 (272)
Q Consensus 50 ~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSL 126 (272)
.++-.|-++..+-...+.+|+.+.+.+-.++. .++..-++...|..|-..|...++.|..++..+|.=-..++-.|
T Consensus 29 d~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~-~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l~~i 104 (108)
T PF02403_consen 29 DEIIELDQERRELQQELEELRAERNELSKEIG-KLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNELLLSI 104 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34444545555555555666666666655553 33332245566666666666666666666666665545555443
No 280
>PRK02793 phi X174 lysis protein; Provisional
Probab=79.29 E-value=11 Score=28.98 Aligned_cols=47 Identities=19% Similarity=0.275 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 024140 63 DSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (272)
Q Consensus 63 d~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDva 113 (272)
++.|.+||.|++-.|..+. ...+...+.+++.+.|...++.|...+.
T Consensus 7 e~Ri~~LE~~lafQe~tIe----~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~ 53 (72)
T PRK02793 7 EARLAELESRLAFQEITIE----ELNVTVTAHEMEMAKLRDHLRLLTEKLK 53 (72)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777776666554 5555555666666666666666655443
No 281
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=79.11 E-value=20 Score=40.70 Aligned_cols=49 Identities=16% Similarity=0.260 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccccc
Q 024140 83 KLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDDED 131 (272)
Q Consensus 83 rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq~d~~ 131 (272)
+-.+..++...|.++..+|.++.+.++.++.|++-+||..+..+++-+.
T Consensus 617 ~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~el~r~~~e~~~~~ek 665 (1317)
T KOG0612|consen 617 QRTEISEIIAELKEEISSLEETLKAGKKELLKVEELKRENQERISDSEK 665 (1317)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566778899999999999999999999999999999988877654
No 282
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=78.95 E-value=11 Score=29.92 Aligned_cols=68 Identities=29% Similarity=0.333 Sum_probs=37.6
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 024140 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKL----GQAQADKERLSKENEALTNTVRKLQRDVS 113 (272)
Q Consensus 41 ~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~---~rL----~~a~ee~~kL~~E~~~La~TvKkL~rDva 113 (272)
...+-..||.||..|..+|.+=...-..| |.+|. .-+ ...-....+|..|-..|...|-+|.+.|.
T Consensus 6 ~~~~r~~LeqeV~~Lq~~L~~E~~~r~aL-------e~al~~~~~~~~~~~~~lp~~~keLL~EIA~lE~eV~~LE~~v~ 78 (88)
T PF14389_consen 6 LHERRSALEQEVAELQKQLQEEQDLRRAL-------EKALGRSSGSLPSSPSSLPKKAKELLEEIALLEAEVAKLEQKVL 78 (88)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhCCCCcccCCccccCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566789999999999998544433333 44444 000 11222334555555555555555555544
Q ss_pred HH
Q 024140 114 KL 115 (272)
Q Consensus 114 KL 115 (272)
-|
T Consensus 79 ~L 80 (88)
T PF14389_consen 79 SL 80 (88)
T ss_pred HH
Confidence 33
No 283
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=78.93 E-value=12 Score=35.60 Aligned_cols=8 Identities=25% Similarity=0.451 Sum_probs=3.8
Q ss_pred HHHHHHHH
Q 024140 115 LEVFRKTL 122 (272)
Q Consensus 115 LE~FKk~L 122 (272)
...|++.|
T Consensus 86 ~~~~~~~~ 93 (378)
T TIGR01554 86 VRAFIKGV 93 (378)
T ss_pred HHHHHHHh
Confidence 34555543
No 284
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=78.91 E-value=22 Score=25.83 Aligned_cols=35 Identities=23% Similarity=0.469 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 024140 82 DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (272)
Q Consensus 82 ~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE 116 (272)
..+....+....|..||+.|...+..|...+..|+
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 26 QYIEELEEKVEELESENEELKKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666666666666666666654
No 285
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=78.79 E-value=22 Score=36.20 Aligned_cols=70 Identities=16% Similarity=0.278 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 024140 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVF 118 (272)
Q Consensus 45 Vs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~F 118 (272)
+..++.|...+-+.+...++.|..+-.++..+..++.+|-....+.-.+|+. |....-.|.+.|+.||..
T Consensus 212 ~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~----lEt~q~~leqeva~le~y 281 (499)
T COG4372 212 AQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQR----LETAQARLEQEVAQLEAY 281 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
No 286
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=78.78 E-value=35 Score=28.06 Aligned_cols=43 Identities=26% Similarity=0.291 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 024140 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (272)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq~ 128 (272)
....++++|..++..|...|++|+-+.+.+|..-|.-..-.++
T Consensus 61 ~~~~e~~~L~~~~~~l~~ei~~L~dg~~~i~e~AR~~l~~~~~ 103 (117)
T COG2919 61 AQQAELEKLSARNTALEAEIKDLKDGRDYIEERARSELGMSKP 103 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhCCCCC
Confidence 6677888888888999999999988877777777776664333
No 287
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=78.75 E-value=15 Score=33.48 Aligned_cols=56 Identities=13% Similarity=0.269 Sum_probs=35.3
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH------HHHHHHHHHHHHHH
Q 024140 40 AISTRVSDLESEHSALRSQLAEKDSRIA-------ELQSQIESIYSSLS------DKLGQAQADKERLS 95 (272)
Q Consensus 40 A~atRVs~LE~E~~~LR~~L~EKd~~i~-------~Lq~r~s~le~~l~------~rL~~a~ee~~kL~ 95 (272)
.+|.+|-+||..+..|-.++.++-+.+. .|..+|+.++..|. +|+..+++.+.|-+
T Consensus 76 rvA~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~llE~~~~~~ 144 (189)
T TIGR02132 76 NVASLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKILELLEGQQKTQ 144 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHHHHHHhcCccch
Confidence 4778888888888888888887766665 44455555555544 44444444443333
No 288
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=78.59 E-value=2.9 Score=38.43 Aligned_cols=32 Identities=34% Similarity=0.502 Sum_probs=25.2
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQ 72 (272)
Q Consensus 41 ~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r 72 (272)
...|+..||.-|..|=.+|+|||..|.-||.|
T Consensus 134 a~~K~qemE~RIK~LhaqI~EKDAmIkVLQqr 165 (205)
T PF12240_consen 134 ANRKCQEMENRIKALHAQIAEKDAMIKVLQQR 165 (205)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35678888888888888888888888888754
No 289
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=78.57 E-value=53 Score=33.68 Aligned_cols=13 Identities=15% Similarity=0.368 Sum_probs=5.6
Q ss_pred HHHHHHHhhhHHH
Q 024140 102 TNTVRKLQRDVSK 114 (272)
Q Consensus 102 a~TvKkL~rDvaK 114 (272)
-.++++..+.|..
T Consensus 146 ~e~l~~f~~~v~~ 158 (475)
T PRK10361 146 REQLDGFRRQVQD 158 (475)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 290
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=78.54 E-value=3.3 Score=31.22 Aligned_cols=28 Identities=29% Similarity=0.414 Sum_probs=24.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 024140 40 AISTRVSDLESEHSALRSQLAEKDSRIA 67 (272)
Q Consensus 40 A~atRVs~LE~E~~~LR~~L~EKd~~i~ 67 (272)
-+..|+.-||+||.+++..++.|..+-.
T Consensus 25 EL~~RIa~L~aEI~R~~~~~~~K~a~r~ 52 (59)
T PF06698_consen 25 ELEERIALLEAEIARLEAAIAKKSASRA 52 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999887654
No 291
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=78.52 E-value=37 Score=32.93 Aligned_cols=57 Identities=21% Similarity=0.210 Sum_probs=31.7
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
Q 024140 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS----------DKLGQAQADKERLSKENE 99 (272)
Q Consensus 43 tRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~----------~rL~~a~ee~~kL~~E~~ 99 (272)
.-++.||.+...++.+-..-..-|.+|+.+-..||++-. .||.+|.++|+=|..|.+
T Consensus 91 ~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESELd 157 (333)
T KOG1853|consen 91 QQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELD 157 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334555555555554444444445555554444444322 678888888877766544
No 292
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=78.48 E-value=76 Score=31.84 Aligned_cols=65 Identities=18% Similarity=0.327 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHH-------HHHHh
Q 024140 54 ALRSQLAEKDSRIAELQSQIESIYSSLS-----------------DKLGQAQADKERLSKENEALTNT-------VRKLQ 109 (272)
Q Consensus 54 ~LR~~L~EKd~~i~~Lq~r~s~le~~l~-----------------~rL~~a~ee~~kL~~E~~~La~T-------vKkL~ 109 (272)
.+|..+.|+.....+|+-+-..|-.+|- +-+.+..|||..|+=.-++|... ..+||
T Consensus 89 ~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~Ln 168 (401)
T PF06785_consen 89 KIRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLN 168 (401)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHH
Confidence 3344455555555555544444433332 22334555555554444444333 34566
Q ss_pred hhHHHHHHH
Q 024140 110 RDVSKLEVF 118 (272)
Q Consensus 110 rDvaKLE~F 118 (272)
|+++.--+.
T Consensus 169 rELaE~lay 177 (401)
T PF06785_consen 169 RELAEALAY 177 (401)
T ss_pred HHHHHHHHH
Confidence 666554333
No 293
>PF13864 Enkurin: Calmodulin-binding
Probab=78.43 E-value=5 Score=31.83 Aligned_cols=56 Identities=21% Similarity=0.384 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 024140 60 AEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (272)
Q Consensus 60 ~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (272)
.|+...+..|+.+...|..+|+ +|-.. -+-.....-+..|...++-|..|+.+|+.
T Consensus 40 eER~~lL~~Lk~~~~el~~ey~-~lp~~-~DT~~~~~rK~~lE~~L~qlE~dI~~lsr 95 (98)
T PF13864_consen 40 EERQELLEGLKKNWDELNKEYQ-KLPFS-IDTLRKKRRKEELEKELKQLEKDIKKLSR 95 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hCCcc-cCCHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4788899999999999999998 44333 22444455566666666666666666654
No 294
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=78.43 E-value=51 Score=35.44 Aligned_cols=113 Identities=23% Similarity=0.277 Sum_probs=66.2
Q ss_pred CChhHHHhcCCCCchhhHHHHHHHHHHHHHHhhhhhHHH-HHHHH-H-------HHHHHHHHHHHHHHHHHHHHH-----
Q 024140 13 DLPEEVLQVLPSDPFEQLDVARKITSIAISTRVSDLESE-HSALR-S-------QLAEKDSRIAELQSQIESIYS----- 78 (272)
Q Consensus 13 ~lp~eil~vLP~DP~EQLdlarkIts~A~atRVs~LE~E-~~~LR-~-------~L~EKd~~i~~Lq~r~s~le~----- 78 (272)
.++-+.+.-+|..-..-|++..+---..+..|+-.+..+ ...+| . +..+.+.++.+|+..+.....
T Consensus 377 ~~~le~~k~~~ke~~~~~~~ka~~E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e~Lqk~~~~~k~ll~e~ 456 (698)
T KOG0978|consen 377 ELRLEMLKSLLKEQRDKLQVKARAETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEELSEELQKKEKNFKCLLSEM 456 (698)
T ss_pred HHHHHHHhCCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666655555556666666665543 33444 1 112334445555554443320
Q ss_pred ------------HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Q 024140 79 ------------SLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQS 125 (272)
Q Consensus 79 ------------~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqS 125 (272)
+.+ --|..+++.|-+|-.|+...-+..|.|..+..+|+.-..+|-.+
T Consensus 457 ~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~ 518 (698)
T KOG0978|consen 457 ETIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKAS 518 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011 33457777888888888888888888888888887776666544
No 295
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=78.40 E-value=50 Score=32.07 Aligned_cols=37 Identities=22% Similarity=0.295 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Q 024140 89 ADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQS 125 (272)
Q Consensus 89 ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqS 125 (272)
+++.++-.-++.|-.-|++|..--.-||.-||+-+-|
T Consensus 98 ddlsqt~aikeql~kyiReLEQaNDdLErakRati~s 134 (333)
T KOG1853|consen 98 DDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYS 134 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhh
Confidence 3334444444444444444444444444444443333
No 296
>KOG4074 consensus Leucine zipper nuclear factor [Function unknown]
Probab=78.19 E-value=22 Score=35.09 Aligned_cols=73 Identities=22% Similarity=0.274 Sum_probs=55.5
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 024140 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQ-IESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSK 114 (272)
Q Consensus 42 atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r-~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaK 114 (272)
+.|..+||.|..-||.+|-=-.+...||..= |.++-..||.+.....+|+.+|+.+++.+.+..-.+.-++.+
T Consensus 136 Sere~~l~~e~~~l~~ql~iqt~vNsELK~LlVASvgddLQ~~ve~LtedK~qLa~~~~~~~~nl~~~~Eq~er 209 (383)
T KOG4074|consen 136 SEREAELERELDLLRKQLNIQTKVNSELKRLLVASVGDDLQGQVEALTEDKVQLAHRVDEYMGNLMVEDEQSER 209 (383)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 4566689999999999998777777787653 455666777778888899999999999888776655544444
No 297
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=78.16 E-value=38 Score=28.12 Aligned_cols=44 Identities=27% Similarity=0.286 Sum_probs=34.2
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 38 SIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 38 s~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~ 81 (272)
...+|.+.-.+|.++..+|.++.++-..+..|+.++..++..+.
T Consensus 43 n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~ 86 (150)
T PF07200_consen 43 NEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQD 86 (150)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888999999999999999999999988888877665
No 298
>TIGR00020 prfB peptide chain release factor 2. In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc.
Probab=78.05 E-value=32 Score=33.99 Aligned_cols=85 Identities=15% Similarity=0.280 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH---H----
Q 024140 32 VARKITSIAISTRVSDLESEHSALRSQLAEK-----DSRIAELQSQIESIYSSLS--DKLGQAQADKERLSK---E---- 97 (272)
Q Consensus 32 larkIts~A~atRVs~LE~E~~~LR~~L~EK-----d~~i~~Lq~r~s~le~~l~--~rL~~a~ee~~kL~~---E---- 97 (272)
|+.++-..+-...+..++.+...|.+.+.+- ...+..+-++++.|...+. .++....++...|.+ +
T Consensus 12 ~~~~~~~~~~~~~l~~~~~~~~~le~~~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~l~el~~~e~D~ 91 (364)
T TIGR00020 12 LTSRLDTVRGSLDPEKKKARLEELEKEMEDPNFWNDQERAQAVIKERSSLEAVLDTLEELKNSLEDLSELLELAVEEDDE 91 (364)
T ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCH
Confidence 4555555554455566666666666666532 2333444445555544444 344444444433332 1
Q ss_pred --HHHHHHHHHHHhhhHHHHH
Q 024140 98 --NEALTNTVRKLQRDVSKLE 116 (272)
Q Consensus 98 --~~~La~TvKkL~rDvaKLE 116 (272)
+..+...++.|.+++.+||
T Consensus 92 e~~~~a~~e~~~l~~~l~~le 112 (364)
T TIGR00020 92 ETFNELDAELKALEKKLAELE 112 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 3345677888999999998
No 299
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=77.97 E-value=13 Score=36.10 Aligned_cols=63 Identities=22% Similarity=0.410 Sum_probs=36.6
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH---------HHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 024140 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-DK---------LGQAQADKERLSKENEALTNTVRKLQRDV 112 (272)
Q Consensus 43 tRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~-~r---------L~~a~ee~~kL~~E~~~La~TvKkL~rDv 112 (272)
.+|..||..+.+|+..-..|.=+ +.+||++|+ .| ......||..|.+..++|..+-.||..|+
T Consensus 18 qKIqelE~QldkLkKE~qQrQfQ-------leSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdl 90 (307)
T PF10481_consen 18 QKIQELEQQLDKLKKERQQRQFQ-------LESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDL 90 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHH
Confidence 67899999999998655555433 445556665 11 22223344445555555555555555554
No 300
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=77.93 E-value=53 Score=29.63 Aligned_cols=14 Identities=29% Similarity=0.506 Sum_probs=5.3
Q ss_pred hhhHHHHHHHHHHH
Q 024140 46 SDLESEHSALRSQL 59 (272)
Q Consensus 46 s~LE~E~~~LR~~L 59 (272)
..||.++..+|.++
T Consensus 146 ~~le~~l~~~k~~i 159 (221)
T PF05700_consen 146 KRLEKELAKLKKEI 159 (221)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 301
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=77.90 E-value=0.71 Score=47.94 Aligned_cols=90 Identities=20% Similarity=0.422 Sum_probs=0.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH----------H
Q 024140 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS------DKLGQAQADKERLSKENEALTN----------T 104 (272)
Q Consensus 41 ~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~------~rL~~a~ee~~kL~~E~~~La~----------T 104 (272)
.+.+...|-++++.||+.+.+++....+++.++..++.++. .-|...-++...|..|.|.|-. +
T Consensus 237 ~~~~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ 316 (713)
T PF05622_consen 237 LSVELADLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEAREARALRDELDELREKADRADKLENE 316 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 33455667778888888888888888888888877777764 2222333445555566665533 3
Q ss_pred HHHHhhhHHHHHHHHHHHHhhcccccc
Q 024140 105 VRKLQRDVSKLEVFRKTLVQSLKDDED 131 (272)
Q Consensus 105 vKkL~rDvaKLE~FKk~LmqSLq~d~~ 131 (272)
|.+..+-+.-++.||+.+ +.|.+++.
T Consensus 317 ve~YKkKLed~~~lk~qv-k~Lee~N~ 342 (713)
T PF05622_consen 317 VEKYKKKLEDLEDLKRQV-KELEEDNA 342 (713)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 333333333445555554 66777664
No 302
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=77.86 E-value=54 Score=35.75 Aligned_cols=26 Identities=15% Similarity=0.198 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHH
Q 024140 97 ENEALTNTVRKLQRDVSKLEVFRKTL 122 (272)
Q Consensus 97 E~~~La~TvKkL~rDvaKLE~FKk~L 122 (272)
+...+......+..+..+|+..++.+
T Consensus 261 ~~~~~~~~~~~~~~~~~~l~~~~~~~ 286 (1042)
T TIGR00618 261 LLKQLRARIEELRAQEAVLEETQERI 286 (1042)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555555554443
No 303
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=77.80 E-value=30 Score=35.48 Aligned_cols=78 Identities=21% Similarity=0.289 Sum_probs=47.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 024140 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQAD-KERLSKENEALTNTVRKLQRDVSKLEVFRKTLV 123 (272)
Q Consensus 45 Vs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee-~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~Lm 123 (272)
|.-|=+++..||.++++=......|+++-+.|..... ...+. +..|..|+..|......|..++.+|...-..|.
T Consensus 61 lrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~----~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~ 136 (472)
T TIGR03752 61 LRTLVAEVKELRKRLAKLISENEALKAENERLQKREQ----SIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQ 136 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566778888888777777777777666654333 22222 234555666666666666666666655555555
Q ss_pred hhc
Q 024140 124 QSL 126 (272)
Q Consensus 124 qSL 126 (272)
+.|
T Consensus 137 ~~l 139 (472)
T TIGR03752 137 RRL 139 (472)
T ss_pred HHH
Confidence 554
No 304
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=77.78 E-value=21 Score=37.19 Aligned_cols=59 Identities=25% Similarity=0.416 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH-HHHHH---HHHHHHHHHHHhhhHHHHH
Q 024140 58 QLAEKDSRIAELQSQIESIYSSLS------DKLGQAQADKE-RLSKE---NEALTNTVRKLQRDVSKLE 116 (272)
Q Consensus 58 ~L~EKd~~i~~Lq~r~s~le~~l~------~rL~~a~ee~~-kL~~E---~~~La~TvKkL~rDvaKLE 116 (272)
.|.+.++.+.-++.++..+|.++. +||..-+++.- .|.+| +..+.+.|+.|..+|+.++
T Consensus 149 ~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~ 217 (546)
T KOG0977|consen 149 RLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLK 217 (546)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344555555555555555555554 23322222221 12222 2445566666666666554
No 305
>PRK00591 prfA peptide chain release factor 1; Validated
Probab=77.67 E-value=34 Score=33.77 Aligned_cols=89 Identities=19% Similarity=0.310 Sum_probs=45.3
Q ss_pred HHHhhhhhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH---HHHH------HHHHHHHH
Q 024140 41 ISTRVSDLESEHSALRSQLAEK-----DSRIAELQSQIESIYSSLS--DKLGQAQADKE---RLSK------ENEALTNT 104 (272)
Q Consensus 41 ~atRVs~LE~E~~~LR~~L~EK-----d~~i~~Lq~r~s~le~~l~--~rL~~a~ee~~---kL~~------E~~~La~T 104 (272)
+..++..++.++..|...+.+. .....++-+++..|+..+. .++....++.. .|.+ -+..+...
T Consensus 4 ~~~~~e~~~~~~~~le~~~~~~~~w~d~~~~~~~~~e~~~L~~~v~~~~~~~~~~~~~~~~~~l~~~e~D~~~~~~~~~e 83 (359)
T PRK00591 4 MLDKLEALEERYEELEALLSDPEVISDQKRFRKLSKEYAELEPIVEAYREYKQAQEDLEEAKEMLEEESDPEMREMAKEE 83 (359)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 3455666666666666665432 1223333334444443333 33333333332 2221 12344466
Q ss_pred HHHHhhhHHHHHH-HHHHHHhhcccc
Q 024140 105 VRKLQRDVSKLEV-FRKTLVQSLKDD 129 (272)
Q Consensus 105 vKkL~rDvaKLE~-FKk~LmqSLq~d 129 (272)
+.+|..+|.+||. |+..||-+-..|
T Consensus 84 ~~~l~~~l~~~e~~l~~~ll~~~~~D 109 (359)
T PRK00591 84 LKELEERLEELEEELKILLLPKDPND 109 (359)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 7888889999886 666666553444
No 306
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=77.62 E-value=8.3 Score=28.82 Aligned_cols=35 Identities=20% Similarity=0.354 Sum_probs=14.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSS 79 (272)
Q Consensus 45 Vs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~ 79 (272)
|..||.++.+|...+.-=...+.+|.+.+..++..
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~en 36 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEEN 36 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444443333444444444444433
No 307
>PLN03188 kinesin-12 family protein; Provisional
Probab=77.46 E-value=32 Score=39.27 Aligned_cols=55 Identities=18% Similarity=0.270 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHhh
Q 024140 67 AELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDV-SKLEVFRKTLVQS 125 (272)
Q Consensus 67 ~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDv-aKLE~FKk~LmqS 125 (272)
+||==|+-..|.++. .|.++-+....|+..|-..+.||.|.- -.+.++|..|-.|
T Consensus 1200 gellvrl~eaeea~~----~a~~r~~~~eqe~~~~~k~~~klkrkh~~e~~t~~q~~aes 1255 (1320)
T PLN03188 1200 GELLVRLKEAEEALT----VAQKRAMDAEQEAAEAYKQIDKLKRKHENEISTLNQLVAES 1255 (1320)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334444444444433 344455566666666666677777766 5667777766444
No 308
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=77.32 E-value=36 Score=33.41 Aligned_cols=81 Identities=25% Similarity=0.393 Sum_probs=55.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHH----HHHH---HHHHHHHHHHHHHHHHH---------------------HHHHHHHHHH
Q 024140 40 AISTRVSDLESEHSALRSQLA----EKDS---RIAELQSQIESIYSSLS---------------------DKLGQAQADK 91 (272)
Q Consensus 40 A~atRVs~LE~E~~~LR~~L~----EKd~---~i~~Lq~r~s~le~~l~---------------------~rL~~a~ee~ 91 (272)
|+-.+...--.-|+.|+|.|. |||. ....||-+++.+++.++ +-+....++|
T Consensus 20 AlhqK~~aKtdairiL~QdLEkfe~Ekd~~a~~aETLeln~ealere~eLlaa~gc~a~~e~gterqdLaa~i~etkeeN 99 (389)
T KOG4687|consen 20 ALHQKCGAKTDAIRILGQDLEKFENEKDGLAARAETLELNLEALERELELLAACGCDAKIEFGTERQDLAADIEETKEEN 99 (389)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHhcCCCchhhccchhhHHHHHHHHHHHHh
Confidence 444444444444677777775 4543 34677888888887765 3345567788
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 024140 92 ERLSKENEALTNTVRKLQRDVSKLEVFRKTLV 123 (272)
Q Consensus 92 ~kL~~E~~~La~TvKkL~rDvaKLE~FKk~Lm 123 (272)
.||.-++..|-++...|..|. |.|+.+.-
T Consensus 100 lkLrTd~eaL~dq~adLhgD~---elfReTeA 128 (389)
T KOG4687|consen 100 LKLRTDREALLDQKADLHGDC---ELFRETEA 128 (389)
T ss_pred HhhhHHHHHHHHHHHHHhchH---HHHHHHHH
Confidence 899999999999998888886 55655543
No 309
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.26 E-value=35 Score=27.15 Aligned_cols=44 Identities=20% Similarity=0.358 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 65 RIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKL 108 (272)
Q Consensus 65 ~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL 108 (272)
+|.+|.++-.+|..+.+ ..-.....+|++|..|-..-...++.|
T Consensus 26 EieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsL 72 (79)
T COG3074 26 EIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRAL 72 (79)
T ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555444 111223345555555555555555444
No 310
>PF11488 Lge1: Transcriptional regulatory protein LGE1
Probab=77.20 E-value=22 Score=27.46 Aligned_cols=30 Identities=17% Similarity=0.105 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 52 HSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 52 ~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~ 81 (272)
+..--..+..||..|.+|+.++-.++..+.
T Consensus 25 l~~~~~ei~~~d~~le~l~~q~~k~~~~~~ 54 (80)
T PF11488_consen 25 LESRFKEIDSKDKELEELYQQDCKTEMEVK 54 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455566788888888887777775554
No 311
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=77.16 E-value=31 Score=33.79 Aligned_cols=30 Identities=20% Similarity=0.283 Sum_probs=19.5
Q ss_pred HHHHHHhhhHHHHHHHHHHHHhhccccccC
Q 024140 103 NTVRKLQRDVSKLEVFRKTLVQSLKDDEDA 132 (272)
Q Consensus 103 ~TvKkL~rDvaKLE~FKk~LmqSLq~d~~~ 132 (272)
.....|.||+.-.++.=.++++..++....
T Consensus 373 ~~l~~L~Re~~~~r~~ye~lL~r~qe~~~~ 402 (458)
T COG3206 373 VQLRELEREAEAARSLYETLLQRYQELSIQ 402 (458)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556677777766667777777766543
No 312
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=77.00 E-value=16 Score=30.44 Aligned_cols=40 Identities=28% Similarity=0.380 Sum_probs=32.4
Q ss_pred HHhhhhhHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 42 STRVSDLESEHSALRS------QLAEKDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 42 atRVs~LE~E~~~LR~------~L~EKd~~i~~Lq~r~s~le~~l~ 81 (272)
..||..||.-+..++. -+.|....|.+.+.+|...+.+|.
T Consensus 42 ~~rv~GLe~AL~~v~~~Ctd~~l~~e~q~ki~~~~~kV~ere~eL~ 87 (115)
T PF06476_consen 42 QHRVAGLEKALEEVKAHCTDEGLKAERQQKIAEKQQKVAEREAELK 87 (115)
T ss_pred HHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999998888875 355788888888888888888887
No 313
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=76.84 E-value=25 Score=26.12 Aligned_cols=52 Identities=19% Similarity=0.362 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhHHHHH
Q 024140 61 EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLS-KENEALTNTVRKLQRDVSKLE 116 (272)
Q Consensus 61 EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~-~E~~~La~TvKkL~rDvaKLE 116 (272)
+|...|.+++..+..++..|. +-.-|...+- .++..+...|+....++.+|+
T Consensus 22 ~r~~~i~~~e~~l~ea~~~l~----qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk 74 (79)
T PF05008_consen 22 QRKSLIREIERDLDEAEELLK----QMELEVRSLPPSERNQYKSKLRSYRSELKKLK 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777776666665554 3333333333 778888888888888877764
No 314
>PRK00106 hypothetical protein; Provisional
Probab=76.83 E-value=79 Score=32.83 Aligned_cols=41 Identities=12% Similarity=0.289 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 024140 87 AQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLK 127 (272)
Q Consensus 87 a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq 127 (272)
..++..+|.+..+.|...-+.|.+--..++.++....+-|.
T Consensus 120 LekrE~eLe~kekeLe~reeeLee~~~~~~~~~~~~~~~Le 160 (535)
T PRK00106 120 LSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQKKAELE 160 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444444444444443
No 315
>COG3334 Uncharacterized conserved protein [Function unknown]
Probab=76.83 E-value=36 Score=31.14 Aligned_cols=84 Identities=19% Similarity=0.266 Sum_probs=51.6
Q ss_pred hcCCCCch-hhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 024140 20 QVLPSDPF-EQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSK-- 96 (272)
Q Consensus 20 ~vLP~DP~-EQLdlarkIts~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~-- 96 (272)
.-+|..+- .|..+.+.-+.++=+.+.+. ..++.++.+|-+.|.++.+++..||.. .++++..+++.+.+..
T Consensus 44 ~~~~~~~~~~~~e~~k~~~~i~da~~dq~-----~~~q~e~~~~lk~~a~~~E~lk~lE~~-kae~k~~~e~re~~l~~~ 117 (192)
T COG3334 44 AELAEKKAAAQSEIEKFCANIADAAADQL-----YALQKELLEKLKDLAEVNERLKALEKK-KAELKDLEEEREGILRSK 117 (192)
T ss_pred hhcccccchhhhHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 44444443 67777766665554444433 667777778888888888888888766 5666666666666652
Q ss_pred --HHHHHHHHHHHHh
Q 024140 97 --ENEALTNTVRKLQ 109 (272)
Q Consensus 97 --E~~~La~TvKkL~ 109 (272)
|.+.|..+.++.-
T Consensus 118 qae~~klv~iY~~Mk 132 (192)
T COG3334 118 QAEDGKLVKIYSKMK 132 (192)
T ss_pred HhhhhHHHHHHHcCC
Confidence 2333555555443
No 316
>PRK04406 hypothetical protein; Provisional
Probab=76.81 E-value=20 Score=27.76 Aligned_cols=43 Identities=9% Similarity=0.134 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024140 64 SRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQR 110 (272)
Q Consensus 64 ~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~r 110 (272)
+.|.+|+.|++-.|..+. ...+...+.+++.+.|...++.|..
T Consensus 11 ~Ri~~LE~~lAfQE~tIe----~LN~~v~~Qq~~I~~L~~ql~~L~~ 53 (75)
T PRK04406 11 ERINDLECQLAFQEQTIE----ELNDALSQQQLLITKMQDQMKYVVG 53 (75)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666665554 4445555556666666666666643
No 317
>PF13514 AAA_27: AAA domain
Probab=76.79 E-value=27 Score=38.32 Aligned_cols=77 Identities=18% Similarity=0.307 Sum_probs=54.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 024140 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS------DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (272)
Q Consensus 44 RVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~------~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (272)
-...|+.|...|=..= -+...|..+-+++..++.++. .....+.++...+..+...|...+++|..+..+|+.
T Consensus 131 ~~~~L~~ea~~Lfkpr-g~~~~in~~l~~l~e~~~~l~~~~~~~~~y~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~ler 209 (1111)
T PF13514_consen 131 VLKQLDKEADELFKPR-GRKPEINQALKELKELERELREAEVRAAEYQELQQALEEAEEELEELRAELKELRAELRRLER 209 (1111)
T ss_pred HHHHHHHHHHHhhCCC-CCChHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444432221 334456777777777777776 667778888888899999999999999999999998
Q ss_pred HHHH
Q 024140 118 FRKT 121 (272)
Q Consensus 118 FKk~ 121 (272)
+++.
T Consensus 210 ~~~~ 213 (1111)
T PF13514_consen 210 LRRA 213 (1111)
T ss_pred HHHH
Confidence 8765
No 318
>COG5493 Uncharacterized conserved protein containing a coiled-coil domain [Function unknown]
Probab=76.76 E-value=60 Score=30.40 Aligned_cols=19 Identities=37% Similarity=0.490 Sum_probs=11.8
Q ss_pred CChhHHHhcCCCCchhhHH
Q 024140 13 DLPEEVLQVLPSDPFEQLD 31 (272)
Q Consensus 13 ~lp~eil~vLP~DP~EQLd 31 (272)
.|-+||-.||=.+|..=.|
T Consensus 2 sL~Eeikrvl~enpeilvd 20 (231)
T COG5493 2 SLAEEIKRVLLENPEILVD 20 (231)
T ss_pred CHHHHHHHHHHhCcHHHHH
Confidence 4567777777777744333
No 319
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=76.71 E-value=17 Score=33.01 Aligned_cols=17 Identities=35% Similarity=0.501 Sum_probs=7.1
Q ss_pred hhhhhHHHHHHHHHHHH
Q 024140 44 RVSDLESEHSALRSQLA 60 (272)
Q Consensus 44 RVs~LE~E~~~LR~~L~ 60 (272)
|+..|+.+..+|++.|.
T Consensus 140 rl~~l~~~~~rl~~ll~ 156 (262)
T PF14257_consen 140 RLKNLEAEEERLLELLE 156 (262)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444333
No 320
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=76.69 E-value=43 Score=32.09 Aligned_cols=63 Identities=22% Similarity=0.447 Sum_probs=47.3
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024140 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQ 109 (272)
Q Consensus 43 tRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (272)
.+|...+.|...+...|.++...+.++++|+.. +.+||.++..+-.+|.+.-..+...|+|..
T Consensus 200 r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e----~~~rl~~l~~~~~~l~k~~~~~~sKV~kf~ 262 (269)
T PF05278_consen 200 RKLELKKEELEELEEELKQKEKEVKEIKERITE----MKGRLGELEMESTRLSKTIKSIKSKVEKFH 262 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445556677777777788888888888888753 337777888888888888888888888764
No 321
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=76.65 E-value=33 Score=32.69 Aligned_cols=21 Identities=14% Similarity=0.284 Sum_probs=8.8
Q ss_pred HHHHhhhhhHHHHHHHHHHHH
Q 024140 40 AISTRVSDLESEHSALRSQLA 60 (272)
Q Consensus 40 A~atRVs~LE~E~~~LR~~L~ 60 (272)
++..-+..+..++..+++++.
T Consensus 166 ~l~~ai~~~~~~~~~~~~~l~ 186 (267)
T PF10234_consen 166 ALKEAIKAVQQQLQQTQQQLN 186 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444
No 322
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=76.52 E-value=42 Score=37.39 Aligned_cols=37 Identities=16% Similarity=0.338 Sum_probs=16.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (272)
Q Consensus 44 RVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l 80 (272)
+...+|.++.....++.+-...+...+..+...+..+
T Consensus 622 ~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (1201)
T PF12128_consen 622 RQEELEKQLKQINKKIEELKREITQAEQELKQAEQDL 658 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3445555544444444444444444444444444333
No 323
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=76.07 E-value=51 Score=32.60 Aligned_cols=90 Identities=19% Similarity=0.317 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH--------
Q 024140 32 VARKITSIAISTRVSDLESEHSALRSQLAEK-----DSRIAELQSQIESIYSSLS--DKLGQAQADKERLSK-------- 96 (272)
Q Consensus 32 larkIts~A~atRVs~LE~E~~~LR~~L~EK-----d~~i~~Lq~r~s~le~~l~--~rL~~a~ee~~kL~~-------- 96 (272)
|+++|....=.-.+..++.+...|..++.+- ...+.+|-++++.|...+. .++....++...|.+
T Consensus 12 ~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~p~~~~d~~~~~~l~ke~~~L~~iv~~~~~l~~~~~e~~~~~ell~~e~D~ 91 (367)
T PRK00578 12 LDEKLENIRGVLDVDALKERLEELEAEAEDPDFWNDQERAQKVTKELSSLKAKLDTLEELRQRLDDLEELLELAEEEDDE 91 (367)
T ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCH
Confidence 4555554444455666666666666666532 2334455555555555554 444444444333222
Q ss_pred -HHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 024140 97 -ENEALTNTVRKLQRDVSKLEVFRKTLV 123 (272)
Q Consensus 97 -E~~~La~TvKkL~rDvaKLE~FKk~Lm 123 (272)
-+..+...++.|...+.+|| ++ .|+
T Consensus 92 el~~~a~~e~~~l~~~l~~le-~~-~ll 117 (367)
T PRK00578 92 ETLAEAEAELKALEKKLAALE-LE-RLL 117 (367)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HH-Hhc
Confidence 22345577788888888888 43 444
No 324
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=76.06 E-value=41 Score=32.16 Aligned_cols=41 Identities=24% Similarity=0.183 Sum_probs=24.1
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 41 ~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~ 81 (272)
|..||.-|=.|++.|-...+.+.+.+..-=+.|-..|..|+
T Consensus 101 IsDklgvLl~e~ge~e~~~a~~~d~yR~~LK~IR~~E~sl~ 141 (271)
T PF13805_consen 101 ISDKLGVLLYEIGELEDQYADRLDQYRIHLKSIRNREESLQ 141 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566666666666666666665555444445555555555
No 325
>PF11855 DUF3375: Protein of unknown function (DUF3375); InterPro: IPR021804 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 479 to 499 amino acids in length.
Probab=75.99 E-value=22 Score=35.80 Aligned_cols=94 Identities=18% Similarity=0.287 Sum_probs=68.1
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhHH
Q 024140 38 SIAISTRVSDLESEHSALRSQLA-EKDSRIAELQSQIESIYSSLSDKLGQA---QADKERLSKENEALTNTVRKLQRDVS 113 (272)
Q Consensus 38 s~A~atRVs~LE~E~~~LR~~L~-EKd~~i~~Lq~r~s~le~~l~~rL~~a---~ee~~kL~~E~~~La~TvKkL~rDva 113 (272)
..+=.+|+..+=.++..|...+. +.+..|++|++++..++.++. +|..= .=+..++.++-..+.+++..|-.|..
T Consensus 117 ~~~TeSRl~tv~~~l~~la~~~~~Dp~~Ri~~Le~e~~~i~~EI~-~l~aG~~~~ld~~~~~er~~~i~~la~~L~~DFr 195 (478)
T PF11855_consen 117 FVGTESRLNTVFDALRQLAEGTDPDPERRIAELEREIAEIDAEID-RLEAGDVPVLDDTQARERARQILQLARELPADFR 195 (478)
T ss_pred ccccHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678899999999999999998 999999999999999999996 22211 11235666777777888888888887
Q ss_pred HHHHH----HHHHHhhccccccC
Q 024140 114 KLEVF----RKTLVQSLKDDEDA 132 (272)
Q Consensus 114 KLE~F----Kk~LmqSLq~d~~~ 132 (272)
..|.- -+.|...+.+++..
T Consensus 196 ~V~~~~r~l~r~lr~~i~~~~~~ 218 (478)
T PF11855_consen 196 RVEDNFRELDRALRERIIDWDGS 218 (478)
T ss_pred HHHHHHHHHHHHHHHHHhhcccc
Confidence 76543 34444555555443
No 326
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=75.88 E-value=22 Score=33.99 Aligned_cols=77 Identities=19% Similarity=0.362 Sum_probs=44.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 024140 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQ 124 (272)
Q Consensus 45 Vs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~Lmq 124 (272)
|.=+..++..+.+.|.+..+.+.+.+.++..++..|. ....+..+..+|+..|...++...+-+.+- ..|+.
T Consensus 216 V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~----~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA----~~Li~ 287 (344)
T PF12777_consen 216 VEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLA----ALQKEYEEAQKEKQELEEEIEETERKLERA----EKLIS 287 (344)
T ss_dssp CCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccH----HHHHh
Confidence 3336666666666666666666666666666654443 556666666666777766666655533332 23555
Q ss_pred hcccc
Q 024140 125 SLKDD 129 (272)
Q Consensus 125 SLq~d 129 (272)
+|.++
T Consensus 288 ~L~~E 292 (344)
T PF12777_consen 288 GLSGE 292 (344)
T ss_dssp CCHHH
T ss_pred hhcch
Confidence 55544
No 327
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=75.82 E-value=23 Score=39.60 Aligned_cols=67 Identities=19% Similarity=0.204 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 024140 48 LESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVF 118 (272)
Q Consensus 48 LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~F 118 (272)
+-.|+..|+++|.+..+...+++.++...+..+. ...+-..++.+++..|...++.|..++++...+
T Consensus 147 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (1123)
T PRK11448 147 LQQEVLTLKQQLELQAREKAQSQALAEAQQQELV----ALEGLAAELEEKQQELEAQLEQLQEKAAETSQE 213 (1123)
T ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3445556666665555555555555554444433 222222334444444444444444444443333
No 328
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=75.81 E-value=40 Score=30.91 Aligned_cols=27 Identities=26% Similarity=0.459 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 49 ESEHSALRSQLAEKDSRIAELQSQIES 75 (272)
Q Consensus 49 E~E~~~LR~~L~EKd~~i~~Lq~r~s~ 75 (272)
+-|+.+||.+|++=|..+...++..+.
T Consensus 95 dwEevrLkrELa~Le~~l~~~~~~~~~ 121 (195)
T PF12761_consen 95 DWEEVRLKRELAELEEKLSKVEQAAES 121 (195)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 347888999999888888888877775
No 329
>TIGR00019 prfA peptide chain release factor 1. This model describes peptide chain release factor 1 (PrfA, RF-1), and excludes the related peptide chain release factor 2 (PrfB, RF-2). RF-1 helps recognize and terminate translation at UAA and UAG stop codons. The mitochondrial release factors are prfA-like, although not included above the trusted cutoff for this model. RF-1 does not have a translational frameshift.
Probab=75.71 E-value=51 Score=32.62 Aligned_cols=27 Identities=19% Similarity=0.374 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhhhHHHHHH-HHHHHHhh
Q 024140 99 EALTNTVRKLQRDVSKLEV-FRKTLVQS 125 (272)
Q Consensus 99 ~~La~TvKkL~rDvaKLE~-FKk~LmqS 125 (272)
..+...++.|..+|.+||. ++..||-+
T Consensus 78 ~~a~~e~~~l~~~~~~~e~~l~~~ll~~ 105 (360)
T TIGR00019 78 EMAKEELEELEEKIEELEEQLKVLLLPK 105 (360)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3455677788888888875 55555544
No 330
>PRK04325 hypothetical protein; Provisional
Probab=75.64 E-value=20 Score=27.56 Aligned_cols=15 Identities=20% Similarity=0.392 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHH
Q 024140 67 AELQSQIESIYSSLS 81 (272)
Q Consensus 67 ~~Lq~r~s~le~~l~ 81 (272)
..+++|+..||..+.
T Consensus 5 ~~~e~Ri~~LE~klA 19 (74)
T PRK04325 5 QEMEDRITELEIQLA 19 (74)
T ss_pred hhHHHHHHHHHHHHH
Confidence 345555665554443
No 331
>PF04576 Zein-binding: Zein-binding; InterPro: IPR007656 This is a family of uncharacterised proteins.
Probab=75.60 E-value=44 Score=27.48 Aligned_cols=41 Identities=29% Similarity=0.361 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh--------hHHHHHHHHHHHHh
Q 024140 84 LGQAQADKERLSKENEALTNTVRKLQR--------DVSKLEVFRKTLVQ 124 (272)
Q Consensus 84 L~~a~ee~~kL~~E~~~La~TvKkL~r--------DvaKLE~FKk~Lmq 124 (272)
-.++...+.+|++||..+..-.+-..| |-.-|+.|+-.|++
T Consensus 33 A~EAMaMI~RLQ~EKAa~~mEA~Qy~Rm~EEk~~yD~e~ie~L~~~l~~ 81 (94)
T PF04576_consen 33 ASEAMAMILRLQEEKAAVEMEARQYQRMAEEKAEYDQEAIESLKDILYK 81 (94)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 347788899999999999877765544 55556666555544
No 332
>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]
Probab=75.53 E-value=91 Score=31.73 Aligned_cols=14 Identities=43% Similarity=0.703 Sum_probs=7.7
Q ss_pred HHHHHHHHHhhccc
Q 024140 115 LEVFRKTLVQSLKD 128 (272)
Q Consensus 115 LE~FKk~LmqSLq~ 128 (272)
+|.|+++|-+++..
T Consensus 141 ~e~f~e~l~~~~~~ 154 (448)
T COG1322 141 LEKFREQLEQRIHE 154 (448)
T ss_pred HHHHHHHHHHHHHH
Confidence 55666666554443
No 333
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=75.52 E-value=31 Score=34.29 Aligned_cols=85 Identities=19% Similarity=0.271 Sum_probs=58.0
Q ss_pred HhcCCCCchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 19 LQVLPSDPFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKEN 98 (272)
Q Consensus 19 l~vLP~DP~EQLdlarkIts~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~ 98 (272)
..+-|.++-+-+- =|.+=.++-..+||..+.|+-.....+|+-+..-+. +....++||..|+
T Consensus 194 ~~~yp~n~~~~~~-----------irasvisa~~eklR~r~eeeme~~~aeq~slkRt~E-------eL~~G~~kL~~~~ 255 (365)
T KOG2391|consen 194 AEPYPPNASGKLV-----------IRASVISAVREKLRRRREEEMERLQAEQESLKRTEE-------ELNIGKQKLVAMK 255 (365)
T ss_pred CCcCCCCcccccc-----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-------HHHhhHHHHHHHH
Confidence 3456666666554 233345555667777776665555555544444443 4456778999999
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHH
Q 024140 99 EALTNTVRKLQRDVSKLEVFRKT 121 (272)
Q Consensus 99 ~~La~TvKkL~rDvaKLE~FKk~ 121 (272)
..|.+++-+|+.+.+-|.+-++.
T Consensus 256 etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 256 ETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHH
Confidence 99999999999999999887766
No 334
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=75.50 E-value=22 Score=40.19 Aligned_cols=32 Identities=19% Similarity=0.402 Sum_probs=15.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESI 76 (272)
Q Consensus 45 Vs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~l 76 (272)
|..||.++..+..++.+.....+++++++..|
T Consensus 780 v~~le~~l~~~~~~~~~~~~~~~~~ee~~~~l 811 (1293)
T KOG0996|consen 780 VEKLERALSKMSDKARQHQEQLHELEERVRKL 811 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566665555555544444444444444333
No 335
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=75.48 E-value=64 Score=34.60 Aligned_cols=39 Identities=21% Similarity=0.366 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 024140 30 LDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAEL 69 (272)
Q Consensus 30 LdlarkIts~A~atRVs~LE~E~~~LR~~L~EKd~~i~~L 69 (272)
++-|++|.. ....++..|=.++...|.++.++.+.+..+
T Consensus 499 i~~A~~~~~-~~~~~~~~li~~L~~~~~~~e~~~~~~~~~ 537 (771)
T TIGR01069 499 IEQAKTFYG-EFKEEINVLIEKLSALEKELEQKNEHLEKL 537 (771)
T ss_pred HHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666552 233344444444444444444444433333
No 336
>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]
Probab=75.46 E-value=27 Score=35.27 Aligned_cols=74 Identities=24% Similarity=0.429 Sum_probs=54.3
Q ss_pred chh--hHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 26 PFE--QLDVARKITSIAISTRVSDLESEHSALRSQLA-----EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKEN 98 (272)
Q Consensus 26 P~E--QLdlarkIts~A~atRVs~LE~E~~~LR~~L~-----EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~ 98 (272)
||| =|++|..-....+.+|+..||-++-.+=+.|. ++-+++..+.+++..|..-.+ ...|+..+|.++.
T Consensus 175 PFEFrALE~aLe~~~s~L~~~~~~Le~~~~~~LdeLt~~is~~nL~~lr~~k~~Lt~l~~rvq----kvRDeLe~LLddd 250 (414)
T KOG2662|consen 175 PFEFRALEVALEAACSFLDSRLSELETEAYPLLDELTNKISTLNLERLRILKKRLTELTSRVQ----KVRDELEELLDDD 250 (414)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHH----HHHHHHHHHhcCh
Confidence 444 58889888899999999999999766655553 556666777777777765554 6777777777777
Q ss_pred HHHHH
Q 024140 99 EALTN 103 (272)
Q Consensus 99 ~~La~ 103 (272)
+.+++
T Consensus 251 ~Dma~ 255 (414)
T KOG2662|consen 251 DDMAE 255 (414)
T ss_pred HHHHH
Confidence 66665
No 337
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=75.30 E-value=28 Score=35.98 Aligned_cols=64 Identities=16% Similarity=0.286 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH-----------HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 024140 63 DSRIAELQSQIESIYSSLS---DKLGQAQADKER-----------LSKENEALTNTVRKLQRDVSKLEVFRKTLVQSL 126 (272)
Q Consensus 63 d~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~k-----------L~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSL 126 (272)
...+.++++|+..|+..=. ..+.++.++..+ ...-++.|.+-.+.+..|++.|+.-.+.=+..|
T Consensus 190 ~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~~~lk~ap~~D~~~L 267 (555)
T TIGR03545 190 KQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLKADLAELKKAPQNDLKRL 267 (555)
T ss_pred chhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccHhHHHHH
Confidence 3445556666665554311 233344444444 444444455555555555555655544433333
No 338
>KOG2417 consensus Predicted G-protein coupled receptor [Signal transduction mechanisms]
Probab=75.27 E-value=9.5 Score=38.40 Aligned_cols=27 Identities=26% Similarity=0.475 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh
Q 024140 99 EALTNTVRKLQRDVSKLEVFRKTLVQS 125 (272)
Q Consensus 99 ~~La~TvKkL~rDvaKLE~FKk~LmqS 125 (272)
++++..+|.|+.+|.-||.+-|+|.--
T Consensus 245 ~~~~~~i~~lq~EV~~LEeLsrqLFLE 271 (462)
T KOG2417|consen 245 NTLSSDIKLLQQEVEPLEELSRQLFLE 271 (462)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777777777543
No 339
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=75.15 E-value=6.9 Score=38.23 Aligned_cols=76 Identities=34% Similarity=0.436 Sum_probs=13.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024140 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS----------DKLGQAQADKERLSKENEALTNTVRKLQR 110 (272)
Q Consensus 41 ~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~----------~rL~~a~ee~~kL~~E~~~La~TvKkL~r 110 (272)
+.++|+.|++++..|-..+++-...|.+|...|..++..|. ..+.........|+..-+.|.-.|-.|.+
T Consensus 54 lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLks 133 (326)
T PF04582_consen 54 LSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKS 133 (326)
T ss_dssp ----------------------------------------------------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhh
Confidence 45566666666666666666655555555555555555444 34444444555566666666666666666
Q ss_pred hHHHHH
Q 024140 111 DVSKLE 116 (272)
Q Consensus 111 DvaKLE 116 (272)
||+-+.
T Consensus 134 dVSt~a 139 (326)
T PF04582_consen 134 DVSTQA 139 (326)
T ss_dssp HHHHHH
T ss_pred hhhhhc
Confidence 665543
No 340
>PF07794 DUF1633: Protein of unknown function (DUF1633); InterPro: IPR012436 This family contains sequences derived from a group of hypothetical proteins expressed by Arabidopsis thaliana (Mouse-ear cress). These sequences are highly similar and the region concerned is about 100 residues long.
Probab=75.13 E-value=30 Score=36.46 Aligned_cols=92 Identities=15% Similarity=0.186 Sum_probs=63.6
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHH
Q 024140 35 KITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS------------------------DKLGQAQAD 90 (272)
Q Consensus 35 kIts~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~------------------------~rL~~a~ee 90 (272)
|-.-..||.|+.-+|-||+.|+....-|.+.|+.|+++-..|+..+. .||.....|
T Consensus 589 kDlekG~Aeki~~me~Ei~glq~DkQ~ar~qIh~Le~~Reelsk~V~DLtssaQgakKAVhdaK~ElA~~Y~klLagiKE 668 (790)
T PF07794_consen 589 KDLEKGYAEKIGFMEMEIGGLQADKQTARNQIHRLEQRREELSKRVMDLTSSAQGAKKAVHDAKVELAAAYSKLLAGIKE 668 (790)
T ss_pred cchhhhhHhhhhhhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44467899999999999999999999999999998887776665543 122222222
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 024140 91 KERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSL 126 (272)
Q Consensus 91 ~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSL 126 (272)
+=--.||--.|..+.-.+.-.++-|+..-|+-+++-
T Consensus 669 Kwv~KKe~t~le~qAaEvesNlaLidqi~kaaIdlt 704 (790)
T PF07794_consen 669 KWVAKKEYTVLEGQAAEVESNLALIDQITKAAIDLT 704 (790)
T ss_pred HHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 222234555666666677777777777777766654
No 341
>COG5374 Uncharacterized conserved protein [Function unknown]
Probab=74.94 E-value=6.7 Score=35.79 Aligned_cols=35 Identities=17% Similarity=0.411 Sum_probs=20.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSS 79 (272)
Q Consensus 45 Vs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~ 79 (272)
...+|++.-.|++.+..++..+++||++...++..
T Consensus 138 ~D~~eA~~t~lk~~~~~~~~~le~Lqkn~~~~~k~ 172 (192)
T COG5374 138 IDKMEADSTDLKARLRKAQILLEGLQKNQEELFKL 172 (192)
T ss_pred hhhhhcchHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666555555433
No 342
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=74.92 E-value=72 Score=29.65 Aligned_cols=71 Identities=23% Similarity=0.279 Sum_probs=41.0
Q ss_pred CCCChhHHHhcCCCCc--hhh-------HHHHHHHHHHHHHHhhh----hhHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 11 TFDLPEEVLQVLPSDP--FEQ-------LDVARKITSIAISTRVS----DLES---EHSALRSQLAEKDSRIAELQSQIE 74 (272)
Q Consensus 11 dF~lp~eil~vLP~DP--~EQ-------LdlarkIts~A~atRVs----~LE~---E~~~LR~~L~EKd~~i~~Lq~r~s 74 (272)
+||+-+-+|.-||.+. .++ |.-.-.+++.-+...|+ ..-+ ++..|+.+|.+=-..|..+++++.
T Consensus 12 ~FD~~~~~L~~l~~~~~~~~~i~~~~ekLs~~ldvVe~~L~~~I~~~s~~f~~a~~~v~el~~~l~~a~~~~~~~R~~L~ 91 (291)
T PF10475_consen 12 DFDPVRYELEKLPEDELDLEDIEELQEKLSHYLDVVEKKLSREISEKSDSFFQAMSSVQELQDELEEALVICKNLRRNLK 91 (291)
T ss_pred CCCchHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999988899999983 222 22222333333333322 1221 255666666666677777777776
Q ss_pred HHHHHHH
Q 024140 75 SIYSSLS 81 (272)
Q Consensus 75 ~le~~l~ 81 (272)
.++..+.
T Consensus 92 ~~~~~~~ 98 (291)
T PF10475_consen 92 SADENLT 98 (291)
T ss_pred HHHHHhH
Confidence 6666554
No 343
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=74.85 E-value=14 Score=26.12 Aligned_cols=27 Identities=33% Similarity=0.514 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 024140 86 QAQADKERLSKENEALTNTVRKLQRDV 112 (272)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDv 112 (272)
....++..|.+||+.|...|..|..-+
T Consensus 16 ~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 16 SLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445667778888888887777776543
No 344
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=74.84 E-value=48 Score=27.53 Aligned_cols=17 Identities=35% Similarity=0.413 Sum_probs=7.1
Q ss_pred hhhHHHHHHHHHHHHHH
Q 024140 46 SDLESEHSALRSQLAEK 62 (272)
Q Consensus 46 s~LE~E~~~LR~~L~EK 62 (272)
..|+.|+..++..+.+-
T Consensus 6 ~~l~~e~~~~~~~~~~~ 22 (132)
T PF07926_consen 6 SSLQSELQRLKEQEEDA 22 (132)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 345
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=74.74 E-value=27 Score=34.43 Aligned_cols=59 Identities=20% Similarity=0.359 Sum_probs=41.5
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 024140 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENE 99 (272)
Q Consensus 41 ~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~ 99 (272)
|++|-..|-.+...|-++..+-.....+|++++.++..-+. .-|.+..+|++++.+|-.
T Consensus 264 I~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemE 325 (384)
T KOG0972|consen 264 IASREKSLNNQLASLMQKFRRATDTLSELREKYKQASVGVSSRTETLDEVMDEIEQLKQEME 325 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777777777777777777777777666555 556677777777666543
No 346
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.63 E-value=28 Score=38.21 Aligned_cols=42 Identities=17% Similarity=0.291 Sum_probs=25.4
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 40 A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~ 81 (272)
++...+..|+-|.+.|..++.++-..+..|.++++-|..+|.
T Consensus 675 ~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 675 NLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555556666666666666666666666666666666654
No 347
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=74.63 E-value=29 Score=27.65 Aligned_cols=60 Identities=18% Similarity=0.379 Sum_probs=40.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 024140 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLV 123 (272)
Q Consensus 44 RVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~Lm 123 (272)
|+.++..||.+.|.+++ ++|.|+-.|+.+.. .-||......|+.++=+...|-.|-+...
T Consensus 2 KleKi~~eieK~k~Kia-------e~Q~rlK~Le~qk~-------------E~EN~EIv~~VR~~~mtp~eL~~~L~~~~ 61 (83)
T PF14193_consen 2 KLEKIRAEIEKTKEKIA-------ELQARLKELEAQKT-------------EAENLEIVQMVRSMKMTPEELAAFLRAMK 61 (83)
T ss_pred hHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH-------------HHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 55667777777775554 45555555554332 34666778888888888888888866653
No 348
>PRK11519 tyrosine kinase; Provisional
Probab=74.52 E-value=38 Score=35.48 Aligned_cols=28 Identities=18% Similarity=0.194 Sum_probs=18.4
Q ss_pred HHHHHhhhHHHHHHHHHHHHhhcccccc
Q 024140 104 TVRKLQRDVSKLEVFRKTLVQSLKDDED 131 (272)
Q Consensus 104 TvKkL~rDvaKLE~FKk~LmqSLq~d~~ 131 (272)
....|.||+.--+.+=..|++.+++-.-
T Consensus 371 ~~~~L~Re~~~~~~lY~~lL~r~~e~~i 398 (719)
T PRK11519 371 EIVRLTRDVESGQQVYMQLLNKQQELKI 398 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3456667777777776777777776543
No 349
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=74.51 E-value=46 Score=28.18 Aligned_cols=71 Identities=24% Similarity=0.226 Sum_probs=41.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 024140 47 DLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSL 126 (272)
Q Consensus 47 ~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSL 126 (272)
+|-.....|-++|+-=.+.|..|++.+...+..|. +-.+.-..|.++++.+.+.+.+++.=.+.+++-.
T Consensus 24 ~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le-----------~d~~~L~~Le~~~~~~~~e~~~~~~~~~~vL~~~ 92 (160)
T PF13094_consen 24 QLLDRKRALERQLAANLHQLELLQEEIEKEEAALE-----------RDYEYLQELEKNAKALEREREEEEKKAHPVLQLD 92 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHhccchhhccc
Confidence 33344445555555555566677777766666654 2233344566677777777776665446666654
Q ss_pred cc
Q 024140 127 KD 128 (272)
Q Consensus 127 q~ 128 (272)
..
T Consensus 93 ~~ 94 (160)
T PF13094_consen 93 DS 94 (160)
T ss_pred cc
Confidence 33
No 350
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=74.45 E-value=52 Score=34.44 Aligned_cols=68 Identities=15% Similarity=0.203 Sum_probs=28.9
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024140 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQR 110 (272)
Q Consensus 43 tRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~r 110 (272)
.++..|+.|+..+-+++..=..+...+.++....-.++++||...+.+.+.+++....|...+..|.|
T Consensus 346 q~~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~L~~~~~~l~~ 413 (656)
T PRK06975 346 RKVDRLDQELVQRQQANDAQTAELRVKTEQAQASVHQLDSQFAQLDGKLADAQSAQQALEQQYQDLSR 413 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46777776666554443211111111111111111222244445555555555555555555554443
No 351
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=74.24 E-value=35 Score=32.72 Aligned_cols=28 Identities=14% Similarity=0.364 Sum_probs=23.4
Q ss_pred HHHHHhhhHHHHHHHHHHHHhhcccccc
Q 024140 104 TVRKLQRDVSKLEVFRKTLVQSLKDDED 131 (272)
Q Consensus 104 TvKkL~rDvaKLE~FKk~LmqSLq~d~~ 131 (272)
.++.|.+-+.+++.||+.||..|.+==+
T Consensus 155 v~~el~~K~~~~k~~~e~Ll~~LgeFLe 182 (268)
T PF11802_consen 155 VFQELKTKIEKIKEYKEKLLSFLGEFLE 182 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478888899999999999999987533
No 352
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=74.24 E-value=3.2 Score=40.50 Aligned_cols=32 Identities=19% Similarity=0.243 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 024140 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (272)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (272)
...-+..+|...-..++-+|..|++-|..||.
T Consensus 123 ~lsTdvsNLksdVSt~aL~ItdLe~RV~~LEs 154 (326)
T PF04582_consen 123 ALSTDVSNLKSDVSTQALNITDLESRVKALES 154 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhhhhhhhhhhhhhcchHhhHHHHHHHHhc
Confidence 44445567777778888888888888888764
No 353
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=74.09 E-value=31 Score=28.50 Aligned_cols=39 Identities=26% Similarity=0.337 Sum_probs=25.5
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 38 SIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESI 76 (272)
Q Consensus 38 s~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~l 76 (272)
+.++..-...|+.+...++.++..+...+..+++++...
T Consensus 31 ~~~~k~~~~~l~~~~~~~~~~l~~~~~el~~~~~~l~~~ 69 (158)
T PF03938_consen 31 SPAGKDAQAKLQEKFKALQKELQAKQKELQKLQQKLQSQ 69 (158)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666777777777777777777776666555443
No 354
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=74.06 E-value=43 Score=30.83 Aligned_cols=38 Identities=24% Similarity=0.324 Sum_probs=16.9
Q ss_pred hhHHHHHHHHHH--------HHHHhhhhhHHHHHHHHHHHHHHHHH
Q 024140 28 EQLDVARKITSI--------AISTRVSDLESEHSALRSQLAEKDSR 65 (272)
Q Consensus 28 EQLdlarkIts~--------A~atRVs~LE~E~~~LR~~L~EKd~~ 65 (272)
-|.+|+.|...+ -....+...|.++..|+..+..|..+
T Consensus 22 ~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~E 67 (202)
T PF06818_consen 22 SQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLE 67 (202)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHh
Confidence 356666655422 22233344444444444444444433
No 355
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=73.97 E-value=27 Score=32.03 Aligned_cols=33 Identities=18% Similarity=0.313 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 48 LESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (272)
Q Consensus 48 LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l 80 (272)
|..+|.+|..++.++...+...+..+-.|+.+|
T Consensus 84 ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~L 116 (201)
T KOG4603|consen 84 LDGKIVALTEKVQSLQQTCSYVEAEIKELSSAL 116 (201)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333444444444444444444444443333333
No 356
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=73.82 E-value=46 Score=33.01 Aligned_cols=88 Identities=33% Similarity=0.439 Sum_probs=57.0
Q ss_pred CchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH---H---------HHH
Q 024140 25 DPFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDS-------RIAELQSQIESIYSSLS---D---------KLG 85 (272)
Q Consensus 25 DP~EQLdlarkIts~A~atRVs~LE~E~~~LR~~L~EKd~-------~i~~Lq~r~s~le~~l~---~---------rL~ 85 (272)
||-+|-+|+ ++=|++||.|.-.+-.+|+--.. .|-.|+.|+++|+.+|. . .|.
T Consensus 213 dp~~qaevq--------~~Lvs~Le~eL~~iqaqL~tvks~m~~~nPqi~~LkarieSlrkql~qe~q~isag~~~~sl~ 284 (372)
T COG3524 213 DPKAQAEVQ--------MSLVSKLEDELIVIQAQLDTVKSVMNPENPQIPGLKARIESLRKQLLQEKQAISAGGSSQSLS 284 (372)
T ss_pred ChhhhhHHH--------HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHhcCCCCccchh
Confidence 677787776 45578899998888888874333 35788999998888876 1 333
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHhhhHHHHHHHHHHH
Q 024140 86 QAQADKERLSKEN----EALTNTVRKLQRDVSKLEVFRKTL 122 (272)
Q Consensus 86 ~a~ee~~kL~~E~----~~La~TvKkL~rDvaKLE~FKk~L 122 (272)
.-..|-+.|.=|| ..|+..++.|. -||.|+.++++
T Consensus 285 ~qaAefq~l~lE~~fAekay~AAl~SlE--sArieAdrqq~ 323 (372)
T COG3524 285 NQAAEFQRLYLENTFAEKAYAAALTSLE--SARIEADRQQL 323 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhhhhhh
Confidence 3333444454444 24555555553 36777777665
No 357
>PRK10869 recombination and repair protein; Provisional
Probab=73.76 E-value=43 Score=34.31 Aligned_cols=50 Identities=12% Similarity=0.172 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-----HHHHHHHHHhhcccccc
Q 024140 82 DKLGQAQADKERLSKENEALTNTVRKLQRDVSK-----LEVFRKTLVQSLKDDED 131 (272)
Q Consensus 82 ~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaK-----LE~FKk~LmqSLq~d~~ 131 (272)
..|....++..+|.++.+.|...++++...|++ .+.|.+.|.+-|++=.-
T Consensus 334 ~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~aA~~l~~~v~~~L~~L~m 388 (553)
T PRK10869 334 QQLDDQEDDLETLALAVEKHHQQALETAQKLHQSRQRYAKELAQLITESMHELSM 388 (553)
T ss_pred HHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 344555666778888888888888888887773 56788888777765543
No 358
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=73.71 E-value=37 Score=28.65 Aligned_cols=71 Identities=17% Similarity=0.288 Sum_probs=46.3
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhHHHHH
Q 024140 42 STRVSDLESEHSALRSQLAEKDSR--IAELQSQIESIYSSLSDKLGQAQADK-ERLSKENEALTNTVRKLQRDVSKLE 116 (272)
Q Consensus 42 atRVs~LE~E~~~LR~~L~EKd~~--i~~Lq~r~s~le~~l~~rL~~a~ee~-~kL~~E~~~La~TvKkL~rDvaKLE 116 (272)
-.=|-.|-.|+..+.+...+-++. ..++...+..|..+|. .+...+ .++..+++.....+..+.+-++-||
T Consensus 66 P~tvLALLDElE~~~~~i~~~~~~~e~~~~a~~~~~l~~~Le----~ae~~~~~~~~~~~~~~e~~~~~~~~riaEle 139 (139)
T PF13935_consen 66 PATVLALLDELERAQQRIAELEQECENEDIALDVQKLRVELE----AAEKRIAAELAEQAEAYEGEIADYAKRIAELE 139 (139)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcC
Confidence 344556666666666666666644 6666666666666555 444444 5677777777887777777777664
No 359
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=73.59 E-value=19 Score=40.51 Aligned_cols=51 Identities=25% Similarity=0.455 Sum_probs=39.1
Q ss_pred HHHHHHHHHHH------HHhhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 024140 31 DVARKITSIAI------STRVSDLESEHSALRSQLAEKDS-RIAELQSQIESIYSSLS 81 (272)
Q Consensus 31 dlarkIts~A~------atRVs~LE~E~~~LR~~L~EKd~-~i~~Lq~r~s~le~~l~ 81 (272)
|=|+||..+|+ +.=+..|-.|++.||.+|..+++ ...+|++|+..+|.-+.
T Consensus 346 drAkrIvN~avvNedpnarvirElReEve~lr~qL~~ae~~~~~el~e~l~esekli~ 403 (1714)
T KOG0241|consen 346 DRAKRIVNHAVVNEDPNARVIRELREEVEKLREQLEQAEAMKLPELKEKLEESEKLIK 403 (1714)
T ss_pred HHHHHhhccccccCCchHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHH
Confidence 67899999987 34456788899999999997554 45788888877776544
No 360
>PF11285 DUF3086: Protein of unknown function (DUF3086); InterPro: IPR021437 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=73.57 E-value=8.6 Score=36.89 Aligned_cols=59 Identities=24% Similarity=0.393 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHhhccccc
Q 024140 65 RIAELQSQIESIYSSLSDKLGQAQADKERLSKEN-EALTNTVRKLQRDVSKLEVFRKTLVQSLKDDE 130 (272)
Q Consensus 65 ~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~-~~La~TvKkL~rDvaKLE~FKk~LmqSLq~d~ 130 (272)
...+|++|-..|+.++. +...+++++.+|- .+.+.+...|.+ +.+.||.-|+.||||=-
T Consensus 5 ~L~eL~qrk~~Lq~eIe----~LerR~~ri~~EmrtsFaG~Sq~lA~---RVqGFkdYLvGsLQDLa 64 (283)
T PF11285_consen 5 ALKELEQRKQALQIEIE----QLERRRERIEKEMRTSFAGQSQDLAI---RVQGFKDYLVGSLQDLA 64 (283)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcccccchHHHHH---HHhhhHHHHHHHHHHHH
Confidence 35667777776666654 5556666666663 345555555555 35789999999999853
No 361
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=73.46 E-value=46 Score=35.34 Aligned_cols=63 Identities=19% Similarity=0.338 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH---HHHHHHHhhccc
Q 024140 66 IAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE---VFRKTLVQSLKD 128 (272)
Q Consensus 66 i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE---~FKk~LmqSLq~ 128 (272)
|..|+.++..|...+. +..+...+++....++...+...++.++..|-.-+ ..+|.|-+-++|
T Consensus 243 i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~e 311 (670)
T KOG0239|consen 243 IQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILE 311 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555544444444 23333444444444444444444444444443333 444444444443
No 362
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=73.43 E-value=23 Score=29.19 Aligned_cols=47 Identities=19% Similarity=0.333 Sum_probs=32.8
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 024140 71 SQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (272)
Q Consensus 71 ~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (272)
+++..||.++. +.+....+....|.+||..|.---.+|..-|.+++.
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444444444 444577788888899999888888888777777765
No 363
>PHA03332 membrane glycoprotein; Provisional
Probab=73.31 E-value=54 Score=37.18 Aligned_cols=55 Identities=13% Similarity=0.224 Sum_probs=36.2
Q ss_pred HhhhhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 43 TRVSDLESEHSALRSQLA----EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKE 97 (272)
Q Consensus 43 tRVs~LE~E~~~LR~~L~----EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E 97 (272)
.||++|..-+.+|=..++ +-|+.|.+-..||+.||.++-.|+.......++|+..
T Consensus 905 aAV~~lsDai~klGnti~kisatl~~nI~avNgRIs~Led~VN~r~~~v~~~intLA~q 963 (1328)
T PHA03332 905 ARVDKTSDVITKLGDTIAKISATLDNNIRAVNGRVSDLEDQVNLRFLAVATNFNTLATQ 963 (1328)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566665555554443 5677788888888888888876666666666555554
No 364
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=73.27 E-value=39 Score=37.91 Aligned_cols=39 Identities=15% Similarity=0.296 Sum_probs=28.3
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 43 tRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~ 81 (272)
..+..++.++..+++++-|+++.+.+-+++++.+|....
T Consensus 741 ~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~ 779 (1174)
T KOG0933|consen 741 DDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMK 779 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667777888888888887777777777777766655
No 365
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=73.21 E-value=27 Score=33.36 Aligned_cols=26 Identities=31% Similarity=0.391 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 56 RSQLAEKDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 56 R~~L~EKd~~i~~Lq~r~s~le~~l~ 81 (272)
|.+.-|.+..++-|+.|+..++..+.
T Consensus 160 ~~~~~e~d~rnq~l~~~i~~l~~~l~ 185 (264)
T PF07246_consen 160 KTQERENDRRNQILSHEISNLTNELS 185 (264)
T ss_pred HhhchhhhhHHHHHHHHHHHhhhhHH
Confidence 44444556666666666666666665
No 366
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=73.16 E-value=29 Score=33.69 Aligned_cols=65 Identities=25% Similarity=0.429 Sum_probs=40.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 024140 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (272)
Q Consensus 46 s~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (272)
.+||++...|-.+..+-+..+..|++.+..+...+. .-+.+|..+.+.|.++.-.|.|++.|||.
T Consensus 118 ~k~e~~k~~Ld~~~~~~~~~~~~l~~~va~v~q~~~-------~qq~Els~~L~~l~~~~~~~s~~~~k~es 182 (300)
T KOG2629|consen 118 DKLEADKRQLDDQFDKAAKSLNALMDEVAQVSQLLA-------TQQSELSRALASLKNTLVQLSRNIEKLES 182 (300)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 356777777666666666666666665555544332 22236777777777776677777777764
No 367
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=73.08 E-value=40 Score=37.67 Aligned_cols=76 Identities=17% Similarity=0.285 Sum_probs=50.2
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 024140 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFR 119 (272)
Q Consensus 40 A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FK 119 (272)
-+..++...|.++..||.++..+...+.+|++++......|. +......-|-+|+..|...+++.++-.+++|+.+
T Consensus 626 ~l~~~~~~~ee~~~~~~~~~~~~~~~~r~lee~~~k~~k~le----~~~~~~~~~~~er~~~~~~~~~~~~r~~~ie~~~ 701 (1072)
T KOG0979|consen 626 VLEELDNRIEEEIQKLKAEIDIRSSTLRELEEKKQKERKELE----EEQKKLKLLKRERTKLNSELKSYQQRKERIENLV 701 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 344455667788888888888888888888888877766654 3333444455555566666666666666666653
No 368
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=73.02 E-value=71 Score=32.49 Aligned_cols=67 Identities=21% Similarity=0.314 Sum_probs=30.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 024140 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIY--------SSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (272)
Q Consensus 45 Vs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le--------~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDva 113 (272)
+.+||.| ..||.-...|+..-.|-+.|...|. .+|-.| ...+.+...|.+|-.....++--|.-.|+
T Consensus 306 rQKle~e-~~l~a~qeakek~~KEAqareaklqaec~rQ~qlaLEEK-aaLrkerd~L~keLeekkreleql~~q~~ 380 (442)
T PF06637_consen 306 RQKLEAE-QGLQASQEAKEKAGKEAQAREAKLQAECARQTQLALEEK-AALRKERDSLAKELEEKKRELEQLKMQLA 380 (442)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444 3345445555555555555544432 222233 33344455555555444444444444443
No 369
>PHA02557 22 prohead core protein; Provisional
Probab=73.01 E-value=36 Score=32.72 Aligned_cols=73 Identities=16% Similarity=0.201 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHhh
Q 024140 53 SALRSQLAEKDSRIAELQSQIESIYSSLS-----DKLGQAQADKERLSKEN-EALTNTVRKLQRDVSKLEVFRKTLVQS 125 (272)
Q Consensus 53 ~~LR~~L~EKd~~i~~Lq~r~s~le~~l~-----~rL~~a~ee~~kL~~E~-~~La~TvKkL~rDvaKLE~FKk~LmqS 125 (272)
..|...|.|..+.+.+|-++...|+..+. .-+..+.++....|+|+ .+|+.-|.--..=..||.+||..+-.+
T Consensus 144 ~em~~~L~E~e~~~~~l~~en~~l~e~i~~~~r~~i~~e~t~gLtdsQkeKv~~L~Egvef~e~F~~kl~~i~E~v~~~ 222 (271)
T PHA02557 144 AEMEEELDEMEEELNELFEENVALEEYINEVKREVILSEVTKDLTESQKEKVASLAEGLEFSETFSKKLTAIVEMVFKS 222 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHhc
Confidence 44444555555555444444444444443 22344444555555554 222222222112235677777766544
No 370
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=72.97 E-value=17 Score=35.77 Aligned_cols=35 Identities=17% Similarity=0.284 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 024140 95 SKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (272)
Q Consensus 95 ~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq~d 129 (272)
.+....|..+.++|.+.+.+|+.-.+.|...|...
T Consensus 374 ~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 374 KEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444555555555555555555555555544443
No 371
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=72.91 E-value=42 Score=30.77 Aligned_cols=18 Identities=39% Similarity=0.471 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 024140 60 AEKDSRIAELQSQIESIY 77 (272)
Q Consensus 60 ~EKd~~i~~Lq~r~s~le 77 (272)
.+|++.|+.+++++..++
T Consensus 103 ~~kd~~i~~~~~~l~~~~ 120 (196)
T PF15272_consen 103 IEKDREIRTLQDELLSLE 120 (196)
T ss_pred HHhHHHHHHHHHHHHHHH
Confidence 456666666665554443
No 372
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=72.82 E-value=15 Score=37.71 Aligned_cols=13 Identities=8% Similarity=0.353 Sum_probs=5.7
Q ss_pred hhhhhHHHHHHHH
Q 024140 44 RVSDLESEHSALR 56 (272)
Q Consensus 44 RVs~LE~E~~~LR 56 (272)
|...||.+++.||
T Consensus 77 kasELEKqLaaLr 89 (475)
T PRK13729 77 TAAQMQKQYEEIR 89 (475)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 373
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=72.78 E-value=26 Score=38.68 Aligned_cols=31 Identities=13% Similarity=0.326 Sum_probs=18.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 47 DLESEHSALRSQLAEKDSRIAELQSQIESIY 77 (272)
Q Consensus 47 ~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le 77 (272)
+|-+|+..||..|.|-.+....+-++.+.||
T Consensus 327 kltrqkadirc~LlEarrk~egfddk~~eLE 357 (1265)
T KOG0976|consen 327 KLTRQKADIRCALLEARRKAEGFDDKLNELE 357 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchhHHHHHHH
Confidence 4446777788777776555544444444444
No 374
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=72.77 E-value=33 Score=29.87 Aligned_cols=56 Identities=21% Similarity=0.271 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 024140 61 EKDSRIAELQSQIESIYSSLS--DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (272)
Q Consensus 61 EKd~~i~~Lq~r~s~le~~l~--~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (272)
.|++.+.=-|+|-+--.+-|. =|.+... .+..|.++|..|.+.|++|..+++.+--
T Consensus 45 ~reEVvrlKQrRRTLKNRGYA~sCR~KRv~-Qk~eLE~~k~~L~qqv~~L~~e~s~~~~ 102 (135)
T KOG4196|consen 45 SREEVVRLKQRRRTLKNRGYAQSCRVKRVQ-QKHELEKEKAELQQQVEKLKEENSRLRR 102 (135)
T ss_pred CHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555444444433333333 3444443 3577999999999999999999887643
No 375
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=72.75 E-value=46 Score=37.94 Aligned_cols=40 Identities=20% Similarity=0.238 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Q 024140 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQS 125 (272)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqS 125 (272)
.+..++.+|.+|...+.....+++-.+.|+..++|+|-..
T Consensus 512 ~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~ 551 (1317)
T KOG0612|consen 512 KLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEA 551 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 4444444444444444444444555556666666666554
No 376
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=72.71 E-value=64 Score=28.04 Aligned_cols=31 Identities=32% Similarity=0.470 Sum_probs=13.7
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 024140 50 SEHSALRSQLA-EKDSRIAELQSQIESIYSSL 80 (272)
Q Consensus 50 ~E~~~LR~~L~-EKd~~i~~Lq~r~s~le~~l 80 (272)
+.+..||..+. -...++++|+.....|..++
T Consensus 58 a~~~eLr~el~~~~k~~~~~lr~~~e~L~~ei 89 (177)
T PF07798_consen 58 AAIAELRSELQNSRKSEFAELRSENEKLQREI 89 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666666554 22233344444433333333
No 377
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=72.67 E-value=62 Score=34.01 Aligned_cols=29 Identities=17% Similarity=0.310 Sum_probs=21.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 45 VSDLESEHSALRSQLAEKDSRIAELQSQI 73 (272)
Q Consensus 45 Vs~LE~E~~~LR~~L~EKd~~i~~Lq~r~ 73 (272)
+.=|+.++..|+++|.+-++.+.+.+++.
T Consensus 269 ~~fL~~qL~~l~~~L~~aE~~l~~fr~~~ 297 (726)
T PRK09841 269 LEFLQRQLPEVRSELDQAEEKLNVYRQQR 297 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44577778888888888888887777765
No 378
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=72.65 E-value=15 Score=36.91 Aligned_cols=36 Identities=22% Similarity=0.342 Sum_probs=24.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 45 Vs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~ 81 (272)
|-+||.|+.-+...-....+ +..|+.....++..+.
T Consensus 324 i~ELe~Ei~~~~~~~~~~~~-l~~L~~~~~~~~~~~~ 359 (448)
T PF05761_consen 324 IPELEQEIEIWNSKKYRFEE-LQELEELLEELQDHLD 359 (448)
T ss_dssp -TTHHHHHHHHHHTHHHHHH-HHHHHHHCHHHHCHHH
T ss_pred ehhhhhhhhhhhhcchhhhH-HHHHHHHHHHHHHHhc
Confidence 67899999888766543333 7777777777776654
No 379
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=72.50 E-value=25 Score=35.88 Aligned_cols=60 Identities=23% Similarity=0.321 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 024140 51 EHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSK 114 (272)
Q Consensus 51 E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaK 114 (272)
-+.+|-..|..|..++.-+..++..++ .|..++.+++.+|.-.-+.|....|.|...+.+
T Consensus 433 Yvdrl~~~L~qk~~~~~k~~~~~~~l~----~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE~ 492 (507)
T PF05600_consen 433 YVDRLVESLQQKLKQEEKLRRKREDLE----EKRQEAQEEQQELEPKLDALVERTRELQKQIEA 492 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 366677777777777776666666665 455589999999999999999999998877665
No 380
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=72.35 E-value=50 Score=34.58 Aligned_cols=75 Identities=25% Similarity=0.389 Sum_probs=35.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHH
Q 024140 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQ---RDVSKLEVFRKTL 122 (272)
Q Consensus 46 s~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~---rDvaKLE~FKk~L 122 (272)
..|+.++..|+.++.+.+..|..|+..+..++.++. +...++..|.++......++.=|. ..|+||+.+-..-
T Consensus 331 ~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~----~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~s 406 (594)
T PF05667_consen 331 EELQEQLDELESQIEELEAEIKMLKSSLKQLEEELE----EKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVEAS 406 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444443333 555555555555554444443332 4456666655444
Q ss_pred Hh
Q 024140 123 VQ 124 (272)
Q Consensus 123 mq 124 (272)
++
T Consensus 407 ~~ 408 (594)
T PF05667_consen 407 EQ 408 (594)
T ss_pred HH
Confidence 33
No 381
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=72.33 E-value=54 Score=27.05 Aligned_cols=39 Identities=31% Similarity=0.359 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 024140 88 QADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSL 126 (272)
Q Consensus 88 ~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSL 126 (272)
.+-..-|.+..+.|...+++|+.+++++..--..+.+-|
T Consensus 93 ~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l 131 (140)
T PRK03947 93 DEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQEL 131 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555666666666666666666655544444433
No 382
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=72.25 E-value=22 Score=35.22 Aligned_cols=31 Identities=26% Similarity=0.434 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 024140 87 AQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (272)
Q Consensus 87 a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (272)
-.+|..||..++..|..-+-+++|..++.+.
T Consensus 375 h~eEk~kle~~rr~Leee~~~f~~rk~~~~~ 405 (406)
T KOG3859|consen 375 HQEEKKKLEEKRKQLEEEVNAFQRRKTAAEL 405 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4577889999999999999999988887764
No 383
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=72.11 E-value=1e+02 Score=30.16 Aligned_cols=80 Identities=23% Similarity=0.339 Sum_probs=45.3
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhHH
Q 024140 38 SIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKER-LSKENEALTNTVRKLQRDVS 113 (272)
Q Consensus 38 s~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~k-L~~E~~~La~TvKkL~rDva 113 (272)
..++--|++.|++|---||++|.+--....--++-|..++..++ .+|..-.++..- |.+.|..|++-..-|.-.+-
T Consensus 216 qes~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f~d~~~~L~ae~ekq~lllEErNKeL~ne~n~LkEr~~ 295 (305)
T PF14915_consen 216 QESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQDQFQDIVKKLQAESEKQVLLLEERNKELINECNHLKERLY 295 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 56788999999999999999998644444333344555555554 222222222222 33333345555544444444
Q ss_pred HHHH
Q 024140 114 KLEV 117 (272)
Q Consensus 114 KLE~ 117 (272)
+.|.
T Consensus 296 qyEk 299 (305)
T PF14915_consen 296 QYEK 299 (305)
T ss_pred HHHH
Confidence 4443
No 384
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=71.96 E-value=13 Score=34.09 Aligned_cols=67 Identities=22% Similarity=0.234 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 024140 49 ESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (272)
Q Consensus 49 E~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (272)
|.=+.+||..=+||-..+-+--.-+....+.|| .-++...+.|.||++||..|-.-.=-|-.|=.|=
T Consensus 19 eel~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdLCCFLDddRqKg 88 (195)
T PF10226_consen 19 EELVRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDLCCFLDDDRQKG 88 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhHHHh
Confidence 444666666666665555444433444444444 3444667778888888877766555554444443
No 385
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=71.92 E-value=42 Score=33.53 Aligned_cols=46 Identities=13% Similarity=0.168 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 59 LAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNT 104 (272)
Q Consensus 59 L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~T 104 (272)
+..=++.|..|++|+..+|..|..+....+.-..+|+...+.|.++
T Consensus 415 i~~l~~~i~~~~~rl~~~e~rl~~qF~ame~~~s~mns~~s~L~~q 460 (462)
T PRK08032 415 LKKLTKQYNAVSDSIDATIARYKAQFTQLDKLMTSLNSTSSYLTQQ 460 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444444444444444444444444555555666555555554
No 386
>PF15003 HAUS2: HAUS augmin-like complex subunit 2
Probab=71.89 E-value=76 Score=30.61 Aligned_cols=86 Identities=21% Similarity=0.241 Sum_probs=59.4
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH----HHHHHHHHHHHHHHHHHH-----------
Q 024140 39 IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIE----SIYSSLS----DKLGQAQADKERLSKENE----------- 99 (272)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s----~le~~l~----~rL~~a~ee~~kL~~E~~----------- 99 (272)
-.++.|...|..=...|..-|.+|++.+.-|++=+. -+|+.|+ .-|..+-....+|..--+
T Consensus 86 ~~L~~K~~~Lq~m~shLe~VLk~K~~Lr~RLqkP~~qe~LPVEA~yHr~vVeLL~laa~fi~~Le~~LetIrwip~~~~~ 165 (277)
T PF15003_consen 86 DYLAEKCEALQSMNSHLEAVLKEKDRLRQRLQKPYCQENLPVEAQYHRYVVELLELAASFIEKLEEHLETIRWIPNFDEN 165 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhcCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 356777777777788888999999999988876554 3455555 444445555555554433
Q ss_pred --HHHHHHHHHhhhHHHHHHHHHHHHh
Q 024140 100 --ALTNTVRKLQRDVSKLEVFRKTLVQ 124 (272)
Q Consensus 100 --~La~TvKkL~rDvaKLE~FKk~Lmq 124 (272)
.+...+.++.--|+++|.|=.++++
T Consensus 166 ~~~m~~aL~ki~~lvae~E~l~e~ilk 192 (277)
T PF15003_consen 166 PSNMDKALAKIDALVAECEELAEQILK 192 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777778888888777664
No 387
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=71.88 E-value=13 Score=31.89 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=9.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 024140 48 LESEHSALRSQLAEKDSRIAELQ 70 (272)
Q Consensus 48 LE~E~~~LR~~L~EKd~~i~~Lq 70 (272)
|++++..+|..+...+..+..||
T Consensus 78 l~a~~~e~qsli~~yE~~~~kLe 100 (131)
T PF04859_consen 78 LAAEIQEQQSLIKTYEIVVKKLE 100 (131)
T ss_pred cccchHHHHHHHHHHHHHHHHHH
Confidence 33334444443333333333333
No 388
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=71.88 E-value=43 Score=35.96 Aligned_cols=85 Identities=25% Similarity=0.321 Sum_probs=0.0
Q ss_pred HHhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 024140 42 STRVSDLES-EHSALRSQLAEKDSRIAELQSQIESIYSSLS--DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVF 118 (272)
Q Consensus 42 atRVs~LE~-E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~--~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~F 118 (272)
...+..+.. ++..|+.++.. +.++.+|...+..++..+. .+.. ...........+.+...++++...+++++.+
T Consensus 472 ~~~~~~~~~~el~~l~~~i~~-~~~~~~l~~e~~~l~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~e~l~~~~e~~~~~ 548 (908)
T COG0419 472 EKELLELYELELEELEEELSR-EKEEAELREEIEELEKELRELEEEL--IELLELEEALKEELEEKLEKLENLLEELEEL 548 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhHHHHhHHHHHHHHHHHHHHHHHHHhH
Q ss_pred HHHH-Hhhcccc
Q 024140 119 RKTL-VQSLKDD 129 (272)
Q Consensus 119 Kk~L-mqSLq~d 129 (272)
+..+ .+.|+.+
T Consensus 549 ~~~~~~~~l~~e 560 (908)
T COG0419 549 KEKLQLQQLKEE 560 (908)
T ss_pred HHHHHHHHHHHH
No 389
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=71.79 E-value=54 Score=26.96 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=12.6
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHH
Q 024140 37 TSIAISTRVSDLESEHSALRSQL 59 (272)
Q Consensus 37 ts~A~atRVs~LE~E~~~LR~~L 59 (272)
+..-+..++.+||.++..+..++
T Consensus 9 ~~~~L~~~~~~le~~i~~~~~~~ 31 (171)
T PF03357_consen 9 TIRRLEKQIKRLEKKIKKLEKKA 31 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666655555444
No 390
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=71.75 E-value=67 Score=34.16 Aligned_cols=51 Identities=22% Similarity=0.326 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 52 HSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALT 102 (272)
Q Consensus 52 ~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La 102 (272)
+..|+++|.+..+...+|..++..+...++.-++.....+..|...+..|.
T Consensus 243 i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~ 293 (670)
T KOG0239|consen 243 IQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLV 293 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555555333333333444444444444
No 391
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=71.72 E-value=62 Score=27.50 Aligned_cols=72 Identities=18% Similarity=0.225 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 024140 47 DLESEHSALRSQLAE-KDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (272)
Q Consensus 47 ~LE~E~~~LR~~L~E-Kd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~L 122 (272)
.|+.++...+..-+. .+....-+...++.|..... ....+...|...+......+..+...+..|+..|..|
T Consensus 2 ~~~~e~~~~~~~~a~~~e~e~~~~~~~~~~l~~~~~----~l~~e~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~kl 74 (136)
T PF04871_consen 2 ELKSELEEEKQLAAKILELETKLKSQAESSLEQENK----RLEAEEKELKEAEQAAEAELEELASEVKELEAEKEKL 74 (136)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 392
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=71.68 E-value=61 Score=27.36 Aligned_cols=54 Identities=22% Similarity=0.300 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhHHHHHH
Q 024140 64 SRIAELQSQIESIYSSLSDKLGQAQADKE-RLSKENEALTNTVRKLQRDVSKLEV 117 (272)
Q Consensus 64 ~~i~~Lq~r~s~le~~l~~rL~~a~ee~~-kL~~E~~~La~TvKkL~rDvaKLE~ 117 (272)
..+.+++..-..++..++.++...+++-. -=+.|-+.|...|..|.|.|++||+
T Consensus 50 dl~~q~k~~~~e~e~K~~r~i~~ml~~~~~~r~~~~~~l~~rvd~Lerqv~~Len 104 (108)
T COG3937 50 DLLRQAKEAQGELEEKIPRKIEEMLSDLEVARQSEMDELTERVDALERQVADLEN 104 (108)
T ss_pred HHHHHHHHHhhhHHHhhhHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555566666666554 1123558888899999999999987
No 393
>PRK10698 phage shock protein PspA; Provisional
Probab=71.63 E-value=80 Score=28.72 Aligned_cols=38 Identities=11% Similarity=0.223 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHH-------HHHHHHHHHhh
Q 024140 88 QADKERLSKENEALTNTVRKLQRDVSK-------LEVFRKTLVQS 125 (272)
Q Consensus 88 ~ee~~kL~~E~~~La~TvKkL~rDvaK-------LE~FKk~LmqS 125 (272)
.+....|..+.+....++.+|..++.+ +++=|.+|+..
T Consensus 98 ~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR 142 (222)
T PRK10698 98 TDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLR 142 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555544 44445555543
No 394
>PF14282 FlxA: FlxA-like protein
Probab=71.52 E-value=23 Score=28.79 Aligned_cols=42 Identities=19% Similarity=0.392 Sum_probs=30.4
Q ss_pred HHHHhhhhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 024140 40 AISTRVSDLESEHSALRSQ----LAEKDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 40 A~atRVs~LE~E~~~LR~~----L~EKd~~i~~Lq~r~s~le~~l~ 81 (272)
.|..++..|..++..|... -.+|...+..|+.++..|+.+|.
T Consensus 23 ~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~ 68 (106)
T PF14282_consen 23 QLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIA 68 (106)
T ss_pred HHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777762 23677888888888888888776
No 395
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=71.41 E-value=11 Score=40.95 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 48 LESEHSALRSQLAEKDSRIAELQSQIE 74 (272)
Q Consensus 48 LE~E~~~LR~~L~EKd~~i~~Lq~r~s 74 (272)
++.|+.+|..++..-+..|..++++++
T Consensus 927 ~~~E~~rL~K~l~kl~~ei~~~~~kL~ 953 (995)
T PTZ00419 927 LKKELAKLEKKLAKLQKSLESYLKKIS 953 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 455555555555554444555544444
No 396
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=71.38 E-value=41 Score=25.30 Aligned_cols=34 Identities=24% Similarity=0.352 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 48 LESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 48 LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~ 81 (272)
.+.+++..++.+.+....+..|+..+..+...+.
T Consensus 3 a~~~l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~ 36 (123)
T PF02050_consen 3 AEQELAEAQQELQEAEEQLEQLQQERQEYQEQLS 36 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445556666666666666666666665544443
No 397
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=71.10 E-value=70 Score=27.80 Aligned_cols=16 Identities=19% Similarity=0.179 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 024140 66 IAELQSQIESIYSSLS 81 (272)
Q Consensus 66 i~~Lq~r~s~le~~l~ 81 (272)
.+.++..++.|-.+++
T Consensus 53 ~~~~~a~~~eLr~el~ 68 (177)
T PF07798_consen 53 EYLFKAAIAELRSELQ 68 (177)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 398
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=71.10 E-value=31 Score=29.91 Aligned_cols=54 Identities=19% Similarity=0.287 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 52 HSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVR 106 (272)
Q Consensus 52 ~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvK 106 (272)
+...+.++.+....+..|+.++...+.+|. .|+....++..|+++-..|....+
T Consensus 15 i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~-~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 15 IEAPKAKVDKVKEERDNLKTQLKEADKQIK-DLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhccCCHHHHHHHHHHHHHHHH
Confidence 445666666666666677777666666663 444433344444444444444444
No 399
>PRK02119 hypothetical protein; Provisional
Probab=70.94 E-value=33 Score=26.41 Aligned_cols=44 Identities=18% Similarity=0.150 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 61 EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKL 108 (272)
Q Consensus 61 EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL 108 (272)
+-++.|.+|+.|++-.|..+. ...+...+.+++.+.|...++.|
T Consensus 6 ~~e~Ri~~LE~rla~QE~tie----~LN~~v~~Qq~~id~L~~ql~~L 49 (73)
T PRK02119 6 NLENRIAELEMKIAFQENLLE----ELNQALIEQQFVIDKMQVQLRYM 49 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777776654 44444444444444444444444
No 400
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=70.79 E-value=18 Score=37.86 Aligned_cols=22 Identities=36% Similarity=0.493 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 024140 88 QADKERLSKENEALTNTVRKLQ 109 (272)
Q Consensus 88 ~ee~~kL~~E~~~La~TvKkL~ 109 (272)
......|..||..|...++.|.
T Consensus 565 ~~~l~~L~~En~~L~~~l~~le 586 (722)
T PF05557_consen 565 KSTLEALQAENEDLLARLRSLE 586 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 4555666667776666665554
No 401
>COG1777 Predicted transcriptional regulators [Transcription]
Probab=70.75 E-value=30 Score=32.24 Aligned_cols=69 Identities=28% Similarity=0.313 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 024140 52 HSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (272)
Q Consensus 52 ~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~L 122 (272)
+..|-.+|.++.+++.+|..+...|+..+. +|++...++..-...++..|..-.+...++|+ |+++++.
T Consensus 120 ~~~l~srl~~~~~~~e~l~~~~~~L~~~~~el~~rik~~ied~~~~~~~~~vl~~l~~n~~~~v~--E~~r~~~ 191 (217)
T COG1777 120 ISELISRLLEINREIEELSRAQTELQKQLNELMDRIKEEIEDKDGDMTERIVLEYLLKNGAADVE--ETSRRTV 191 (217)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhhhHHH--HHHhccc
Confidence 455666677777777777777777777666 78888888887777777778777777777776 4454443
No 402
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=70.66 E-value=13 Score=29.67 Aligned_cols=35 Identities=17% Similarity=0.302 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 024140 84 LGQAQADKERLSKENEALTNTVRKLQRDVSKLEVF 118 (272)
Q Consensus 84 L~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~F 118 (272)
|.....++.|--+....+...+|.|.+..--+|+.
T Consensus 3 leKi~~eieK~k~Kiae~Q~rlK~Le~qk~E~EN~ 37 (83)
T PF14193_consen 3 LEKIRAEIEKTKEKIAELQARLKELEAQKTEAENL 37 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555666666666666666666666666655
No 403
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=70.36 E-value=73 Score=35.78 Aligned_cols=33 Identities=24% Similarity=0.269 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 68 ELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNT 104 (272)
Q Consensus 68 ~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~T 104 (272)
.|.++...++..|+ ....+...+.+|...+..+
T Consensus 480 ~l~~~~~~~k~~L~----~~~~el~~~~ee~~~~~~~ 512 (1041)
T KOG0243|consen 480 LLKEEKEKLKSKLQ----NKNKELESLKEELQQAKAT 512 (1041)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 55555555555544 4444444444444444444
No 404
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=70.24 E-value=16 Score=38.64 Aligned_cols=45 Identities=18% Similarity=0.298 Sum_probs=30.8
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 37 TSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 37 ts~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~ 81 (272)
|..++-..|..||.++.+.+++|.+++.++.+|.++++.++.+++
T Consensus 18 t~~~~~~~v~~l~~~v~~kd~elr~rqt~~~~l~~~~~~~~~~i~ 62 (732)
T KOG0614|consen 18 TARELQNLVPQLEEAVQRKDAELRQRQTILEELIKEISKLEGEIA 62 (732)
T ss_pred chHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 455566667777777777777777777777777766666665543
No 405
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=70.15 E-value=64 Score=27.32 Aligned_cols=77 Identities=26% Similarity=0.333 Sum_probs=40.5
Q ss_pred chhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH-HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 26 PFEQLDVARKITSIAISTRVSDLESEHSALRSQL-AE--KDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALT 102 (272)
Q Consensus 26 P~EQLdlarkIts~A~atRVs~LE~E~~~LR~~L-~E--Kd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La 102 (272)
+-++++=..+-.+..|..+....|.-|..|=..- .| =.+.|.+|++... .+.++..+..+|++.|-
T Consensus 63 ~~~~~~~~~~elA~dIi~kakqIe~LIdsLPg~~~see~Q~~~i~~L~~E~~-----------~~~~el~~~v~e~e~ll 131 (144)
T PF11221_consen 63 PPEEFEENIKELATDIIRKAKQIEYLIDSLPGIEVSEEEQLKRIKELEEENE-----------EAEEELQEAVKEAEELL 131 (144)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSSS-HHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHH
Confidence 4556666666666667777766666666654311 12 1233444443333 44444455555566666
Q ss_pred HHHHHHhhhHH
Q 024140 103 NTVRKLQRDVS 113 (272)
Q Consensus 103 ~TvKkL~rDva 113 (272)
..|..+-++|+
T Consensus 132 ~~v~~~i~~ia 142 (144)
T PF11221_consen 132 KQVQELIREIA 142 (144)
T ss_dssp HHHHHHHHTT-
T ss_pred HHHHHHHHHHh
Confidence 66666655554
No 406
>PF14992 TMCO5: TMCO5 family
Probab=70.11 E-value=17 Score=34.84 Aligned_cols=35 Identities=20% Similarity=0.358 Sum_probs=17.2
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIY 77 (272)
Q Consensus 43 tRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le 77 (272)
..+.+|-..-..|=+++.+|+..|..|+..++..+
T Consensus 11 ~d~Q~ldE~Nq~lL~ki~~~E~~iq~Le~Eit~~~ 45 (280)
T PF14992_consen 11 KDEQRLDEANQSLLQKIQEKEGAIQSLEREITKMD 45 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33444444444555555555555555555444443
No 407
>PRK14143 heat shock protein GrpE; Provisional
Probab=69.98 E-value=68 Score=29.94 Aligned_cols=31 Identities=16% Similarity=0.255 Sum_probs=14.1
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQI 73 (272)
Q Consensus 43 tRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~ 73 (272)
.++..|+.|+..|+.++.-..+.+.-+++|.
T Consensus 74 ~el~~l~~e~~elkd~~lR~~AdfeN~RKR~ 104 (238)
T PRK14143 74 QELESLKQELEELNSQYMRIAADFDNFRKRT 104 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555544444444444444444443
No 408
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=69.97 E-value=27 Score=25.86 Aligned_cols=27 Identities=22% Similarity=0.430 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 48 LESEHSALRSQLAEKDSRIAELQSQIE 74 (272)
Q Consensus 48 LE~E~~~LR~~L~EKd~~i~~Lq~r~s 74 (272)
++.|+.+|..++..=...|..++.+++
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~kL~ 28 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKKLS 28 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 567777777777766666666666655
No 409
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=69.89 E-value=56 Score=35.15 Aligned_cols=75 Identities=21% Similarity=0.271 Sum_probs=47.2
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 024140 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSK 114 (272)
Q Consensus 40 A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaK 114 (272)
++...+++|+.|...+.+.+..=-.++.++...+..|...+- ++|.++.+....+..|.+.+....++|.-++.+
T Consensus 535 ~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~ 612 (698)
T KOG0978|consen 535 GLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELER 612 (698)
T ss_pred HhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666555566666656665555554 666677777777777777776666666655444
No 410
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=69.81 E-value=56 Score=38.64 Aligned_cols=42 Identities=26% Similarity=0.398 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 024140 82 DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLV 123 (272)
Q Consensus 82 ~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~Lm 123 (272)
.+++.+.-+...|.+|+..|..+-++|.+++.+|..-++-|+
T Consensus 738 ~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~ 779 (1822)
T KOG4674|consen 738 EKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQ 779 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888999999999999999999999999998887775
No 411
>PF12998 ING: Inhibitor of growth proteins N-terminal histone-binding; InterPro: IPR024610 Histones undergo numerous post-translational modifications, including acetylation and methylation, at residues which are then probable docking sites for various chromatin remodelling complexes. Inhibitor of growth proteins (INGs) specifically bind to residues that have been thus modified. INGs carry a well-characterised C-terminal PHD-type zinc-finger domain, binding with lysine 4-tri-methylated histone H3 (H3K4me3), as well as this N-terminal domain that binds unmodified H3 tails. Although these two regions can bind histones independently, together they increase the apparent association of the ING for the H3 tail. This entry represents the N-terminal histone binding domain found in inhibitor proteins.; PDB: 4AFL_A.
Probab=69.80 E-value=48 Score=25.45 Aligned_cols=73 Identities=16% Similarity=0.271 Sum_probs=40.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-----------------DKLGQAQADKERLSKENEALTNTVR 106 (272)
Q Consensus 44 RVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~-----------------~rL~~a~ee~~kL~~E~~~La~TvK 106 (272)
.+..|=.|+.+.=..+.|.|..+.++...+...-..+. .++....++..+|.+||-.|+.++-
T Consensus 9 ~~~~LP~el~r~l~~irelD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~l~deKv~lA~~~~ 88 (105)
T PF12998_consen 9 SLENLPAELQRNLTLIRELDAKSQDLLEELDQQIQKFIKNHGSPSLSPEKRRELLKEIQEEYERALELSDEKVALAQQAY 88 (105)
T ss_dssp SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTS--S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHChHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhcccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555444444433222221 4556667777888888888887653
Q ss_pred -HHhhhHHHHH
Q 024140 107 -KLQRDVSKLE 116 (272)
Q Consensus 107 -kL~rDvaKLE 116 (272)
.+.+.+.+|+
T Consensus 89 d~v~~hi~rLD 99 (105)
T PF12998_consen 89 DLVDRHIRRLD 99 (105)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 3344444443
No 412
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=69.75 E-value=1.2e+02 Score=34.19 Aligned_cols=90 Identities=23% Similarity=0.326 Sum_probs=57.6
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 024140 39 IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS----------DKLGQAQA-DKERLSKENEALTNTVRK 107 (272)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~----------~rL~~a~e-e~~kL~~E~~~La~TvKk 107 (272)
..+.-.|.+=|.||..||..+-=|.+.+.+++=|..-+|..|. +++.++.+ -...|.+.-..+..|+..
T Consensus 951 egL~~tle~re~eikeLkk~aKmkqeelSe~qvRldmaEkkLss~~k~~~h~v~~~~ek~ee~~a~lr~Ke~efeetmda 1030 (1243)
T KOG0971|consen 951 EGLGLTLEDRETEIKELKKSAKMKQEELSEAQVRLDLAEKKLSSAAKDADHRVEKVQEKLEETQALLRKKEKEFEETMDA 1030 (1243)
T ss_pred hhhhhhHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555556666666666666666565555555555554 23333222 234455556678899999
Q ss_pred HhhhHHHHHHHHHHHHhhccc
Q 024140 108 LQRDVSKLEVFRKTLVQSLKD 128 (272)
Q Consensus 108 L~rDvaKLE~FKk~LmqSLq~ 128 (272)
|++|+.-||.=|-.|-|.|+-
T Consensus 1031 Lq~di~~lEsek~elKqrl~~ 1051 (1243)
T KOG0971|consen 1031 LQADIDQLESEKAELKQRLNS 1051 (1243)
T ss_pred HHHHHHHHHhhHHHHHHHhhh
Confidence 999999999999999888754
No 413
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=69.38 E-value=49 Score=25.32 Aligned_cols=35 Identities=23% Similarity=0.412 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 024140 87 AQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQ 124 (272)
Q Consensus 87 a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~Lmq 124 (272)
..++...|..+.+.|....+.|...+ +.+|..|..
T Consensus 67 L~~~~~~~~~~i~~l~~~~~~l~~~l---~~~~~~l~~ 101 (106)
T PF01920_consen 67 LEERIEKLEKEIKKLEKQLKYLEKKL---KELKKKLYE 101 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 33444444444444444444444333 334444443
No 414
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=69.32 E-value=51 Score=31.77 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024140 52 HSALRSQLAEKDSRIAELQSQI 73 (272)
Q Consensus 52 ~~~LR~~L~EKd~~i~~Lq~r~ 73 (272)
|..|+++|.|.++.+++|++.+
T Consensus 114 vd~Lkd~lee~eE~~~~~~re~ 135 (302)
T PF09738_consen 114 VDLLKDKLEELEETLAQLQREY 135 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555554444
No 415
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=69.29 E-value=24 Score=28.77 Aligned_cols=33 Identities=12% Similarity=0.158 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 024140 84 LGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (272)
Q Consensus 84 L~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE 116 (272)
+.+..++.+.+.+|++.|.+.-..|.++|..|.
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445555556666666666666666666665553
No 416
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=69.24 E-value=1.1e+02 Score=29.21 Aligned_cols=24 Identities=13% Similarity=0.148 Sum_probs=9.8
Q ss_pred hhHHHHHHHHHHHHHHhhhhhHHH
Q 024140 28 EQLDVARKITSIAISTRVSDLESE 51 (272)
Q Consensus 28 EQLdlarkIts~A~atRVs~LE~E 51 (272)
+++.=|..|..-....++..+.+|
T Consensus 48 ~~~~~~i~~le~~~~~~l~~ak~e 71 (258)
T PF15397_consen 48 DIYRTAIDILEYSNHKQLQQAKAE 71 (258)
T ss_pred HHHHHHHHHHHccChHHHHHHHHH
Confidence 344444444444444444433333
No 417
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=69.01 E-value=4.1 Score=35.74 Aligned_cols=81 Identities=19% Similarity=0.240 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024140 30 LDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQ 109 (272)
Q Consensus 30 LdlarkIts~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (272)
|.++..=+-+++...+..|+.+-.+|+.++.-=.+.+.-|+.++..-...|+ .+.++..+|-.|++-|...+-++.
T Consensus 2 L~~~~aq~~~~l~~~L~~l~~erqkl~~qv~rL~qEN~~Lr~el~~tq~~lq----~se~~~~~Lpee~~~Lqfl~~~~r 77 (181)
T PF09311_consen 2 LGLGEAQVMRALQQHLQSLEAERQKLRAQVRRLCQENDWLRGELANTQQKLQ----ESEQEVAQLPEEVKHLQFLVSIKR 77 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHT----------------------------------------------------
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhhhhhcCcchHHHHHHHHHhcc
Confidence 4455555678888889999998888888877666666667666665554444 777777888888777777666665
Q ss_pred hhHHH
Q 024140 110 RDVSK 114 (272)
Q Consensus 110 rDvaK 114 (272)
-|+..
T Consensus 78 ~d~~~ 82 (181)
T PF09311_consen 78 EDLIE 82 (181)
T ss_dssp -----
T ss_pred ccccc
Confidence 55433
No 418
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=68.76 E-value=36 Score=31.19 Aligned_cols=47 Identities=23% Similarity=0.296 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024140 63 DSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQ 109 (272)
Q Consensus 63 d~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (272)
.....+|+.++..|+.+|.++...+.+++.+|.++...+.-+.+.|.
T Consensus 81 ~~~~~~l~~~i~~le~~lvd~~~~kd~~i~~~~~~l~~~~~r~~el~ 127 (196)
T PF15272_consen 81 SKQSEDLQSRISNLEKQLVDQMIEKDREIRTLQDELLSLELRNKELQ 127 (196)
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45557788999999999988888899999999999999999988888
No 419
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=68.67 E-value=69 Score=33.68 Aligned_cols=77 Identities=21% Similarity=0.330 Sum_probs=49.9
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHH----------HHHHHHH-HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 024140 36 ITSIAISTRVSDLESEHSALRSQLA----------EKDSRIA-ELQSQIESIYSSLS---DKLGQAQADKERLSKENEAL 101 (272)
Q Consensus 36 Its~A~atRVs~LE~E~~~LR~~L~----------EKd~~i~-~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~L 101 (272)
----|+--|+-.||.|+..||.+.. +|.+..+ ++.+++-.+..+.+ .-|....++++.+++|+..|
T Consensus 159 ~~~EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skL 238 (596)
T KOG4360|consen 159 ELLEALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKL 238 (596)
T ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445788899999999999998753 4544444 55555544444443 33456677777777777777
Q ss_pred HHHHHHHhhhH
Q 024140 102 TNTVRKLQRDV 112 (272)
Q Consensus 102 a~TvKkL~rDv 112 (272)
.+.+-.|.+.+
T Consensus 239 lsql~d~qkk~ 249 (596)
T KOG4360|consen 239 LSQLVDLQKKI 249 (596)
T ss_pred HHHHHhhHHHH
Confidence 77765554443
No 420
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=68.64 E-value=85 Score=35.41 Aligned_cols=93 Identities=17% Similarity=0.221 Sum_probs=0.0
Q ss_pred CCCchhhHHHHHHHH----HHHHHHhhhhhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 024140 23 PSDPFEQLDVARKIT----SIAISTRVSDLESE-------HSALRSQLAEKDSRIAELQSQIESIYSSLS-DKLGQAQAD 90 (272)
Q Consensus 23 P~DP~EQLdlarkIt----s~A~atRVs~LE~E-------~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~-~rL~~a~ee 90 (272)
+..+.+.|.=+++.. ..++..++..||.| .+-+|.+......++..++.++..|+.++. -|+.++++.
T Consensus 163 ~~~~~~~l~~a~~~~lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~kR~~~se~~ 242 (1109)
T PRK10929 163 LGTPNTPLAQAQLTALQAESAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQRQREAERA 242 (1109)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH-----------------HHHHHHHHHHHhhhHHHH
Q 024140 91 KERLSKE-----------------NEALTNTVRKLQRDVSKL 115 (272)
Q Consensus 91 ~~kL~~E-----------------~~~La~TvKkL~rDvaKL 115 (272)
.++.+.. |..|+..+.+++..+..|
T Consensus 243 ~~~~~~~~~~~~~~~~~i~~~~~~N~~Ls~~L~~~t~~~n~l 284 (1109)
T PRK10929 243 LESTELLAEQSGDLPKSIVAQFKINRELSQALNQQAQRMDLI 284 (1109)
T ss_pred HHHHHHhHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHH
No 421
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=68.59 E-value=83 Score=28.72 Aligned_cols=38 Identities=21% Similarity=0.250 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 024140 83 KLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRK 120 (272)
Q Consensus 83 rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk 120 (272)
.+....+||.+|.+|+..|...+..|+.--+..+.+|+
T Consensus 70 ~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~ 107 (276)
T PRK13922 70 SLFDLREENEELKKELLELESRLQELEQLEAENARLRE 107 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467778888888888887777766655555566655
No 422
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=68.28 E-value=45 Score=33.04 Aligned_cols=62 Identities=19% Similarity=0.343 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 024140 66 IAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (272)
Q Consensus 66 i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq~ 128 (272)
+.+|+.+.+.+-.++. +++...++..+|.+|-..|.+.++.|...+..+|.=-..++..|-+
T Consensus 44 ~~~lr~~rn~~sk~i~-~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~iPN 105 (425)
T PRK05431 44 LEELQAERNALSKEIG-QAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEELLLRIPN 105 (425)
T ss_pred HHHHHHHHHHHHHHHH-HHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3444444444444442 2122222344566666777777777777777777666667776654
No 423
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=68.21 E-value=1.4e+02 Score=33.51 Aligned_cols=38 Identities=13% Similarity=0.301 Sum_probs=14.9
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSS 79 (272)
Q Consensus 42 atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~ 79 (272)
..|+..++..+..++....+-+..+..+++++..+..+
T Consensus 606 ~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~ 643 (1201)
T PF12128_consen 606 RERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKRE 643 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444443333333333333333333333
No 424
>PF09432 THP2: Tho complex subunit THP2; InterPro: IPR018557 The THO complex plays a role in coupling transcription elongation to mRNA export. It is composed of subunits THP2, HPR1, THO2 and MFT1 [].
Probab=68.18 E-value=82 Score=27.45 Aligned_cols=71 Identities=21% Similarity=0.296 Sum_probs=54.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH--------HHHHHhhhHHHHHH
Q 024140 48 LESEHSALRSQLAEKDSRIAELQSQIESIYSSLS--DKLGQAQADKERLSKENEALTN--------TVRKLQRDVSKLEV 117 (272)
Q Consensus 48 LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~--~rL~~a~ee~~kL~~E~~~La~--------TvKkL~rDvaKLE~ 117 (272)
-..+++.||.+|..=-..|..-+.|++ ||..+. +.|++...|.+.-.+|-+++.+ .+||+-+.| |+
T Consensus 50 ~~~d~~~lr~~L~~YLD~IKm~RAkY~-lENky~L~~tL~~LtkEVn~Wr~ewd~iE~~mFGD~pnSmkkMl~nv---es 125 (132)
T PF09432_consen 50 PSTDTEELRAQLDRYLDDIKMERAKYS-LENKYSLQDTLNQLTKEVNYWRKEWDNIEMLMFGDGPNSMKKMLQNV---ES 125 (132)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH---HH
Confidence 345688999999988888888777775 566555 8999999999999999999875 467765554 55
Q ss_pred HHHHH
Q 024140 118 FRKTL 122 (272)
Q Consensus 118 FKk~L 122 (272)
+|..|
T Consensus 126 lk~~l 130 (132)
T PF09432_consen 126 LKSKL 130 (132)
T ss_pred HHHHh
Confidence 55554
No 425
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=68.16 E-value=35 Score=28.51 Aligned_cols=34 Identities=29% Similarity=0.376 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 024140 82 DKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (272)
Q Consensus 82 ~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (272)
..+....+....|.+||..|.---..|.+-++++
T Consensus 22 ~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 22 KELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334555666666666666666666665555554
No 426
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=68.14 E-value=58 Score=31.60 Aligned_cols=65 Identities=15% Similarity=0.376 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 024140 47 DLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (272)
Q Consensus 47 ~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (272)
.|..++..++.+-.++.+...++.+++..+-.... ..+++..+|-.+++.+-..+-.|.+++.+|
T Consensus 31 El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rd----eineev~elK~kR~ein~kl~eL~~~~~~l 95 (294)
T COG1340 31 ELRKEASELAEKRDELNAKVRELREKAQELREERD----EINEEVQELKEKRDEINAKLQELRKEYREL 95 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 427
>PRK10807 paraquat-inducible protein B; Provisional
Probab=68.13 E-value=1.2e+02 Score=31.27 Aligned_cols=104 Identities=14% Similarity=0.298 Sum_probs=50.2
Q ss_pred hcCCCCchhhHHHHHHHHHHHHHHhhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHH
Q 024140 20 QVLPSDPFEQLDVARKITSIAISTRVSDL--ESEHSALRSQLAEKDSRIAELQSQIESIYSSLS--------DKLGQAQA 89 (272)
Q Consensus 20 ~vLP~DP~EQLdlarkIts~A~atRVs~L--E~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~--------~rL~~a~e 89 (272)
-|||+.|=.==+|..+|. ++..|+.+| |.=+..|..-|.+=++.+.+|+..+..++..+. ..|..+.+
T Consensus 406 pvIPt~ps~l~~l~~~~~--~il~kin~lple~i~~~l~~tL~~~~~tl~~l~~~l~~l~~ll~~~~~~~Lp~~L~~TL~ 483 (547)
T PRK10807 406 PIIPTVSGGLAQIQQKLM--EALDKINNLPLNPMIEQATSTLSESQRTMRELQTTLDSLNKITSSQSMQQLPADMQKTLR 483 (547)
T ss_pred ceeecCCCCHHHHHHHHH--HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHH
Confidence 578887643222223332 233333333 333444555555555555555555544432222 33445555
Q ss_pred HHHHHHHH-------HHHHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 024140 90 DKERLSKE-------NEALTNTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (272)
Q Consensus 90 e~~kL~~E-------~~~La~TvKkL~rDvaKLE~FKk~LmqSLq~d 129 (272)
+.+++.++ ...|.+|++.|+|=+..| |.|+..|++.
T Consensus 484 ~l~~~l~~~~~~s~~~~~l~~tl~~l~~~~r~l----r~l~~~L~~~ 526 (547)
T PRK10807 484 ELNRSMQGFQPGSPAYNKMVADMQRLDQVLREL----QPVLKTLNEK 526 (547)
T ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHH----HHHHHHHHhC
Confidence 55554444 344556666666666555 4445555443
No 428
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=68.03 E-value=74 Score=32.28 Aligned_cols=83 Identities=20% Similarity=0.343 Sum_probs=54.1
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 024140 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKT 121 (272)
Q Consensus 42 atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~ 121 (272)
..++-.|+.+.++|..+ ..+|+.+.+.+-.++...++.-.++...|..|...|...++.+...+..++.=-.+
T Consensus 28 ~~~~~~ld~~~r~~~~~-------~e~l~~~rn~~sk~ig~~~~~~~~~~~~l~~e~~~l~~~l~~~e~~~~~~~~~l~~ 100 (429)
T COG0172 28 VDKLLELDEERRKLLRE-------LEELQAERNELSKEIGRALKRGEDDAEELIAEVKELKEKLKELEAALDELEAELDT 100 (429)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34444444444444444 44455555555554432233333356789999999999999999999998888888
Q ss_pred HHhhcccccc
Q 024140 122 LVQSLKDDED 131 (272)
Q Consensus 122 LmqSLq~d~~ 131 (272)
+|.+|.+-..
T Consensus 101 ~ll~ipNi~~ 110 (429)
T COG0172 101 LLLTIPNIPH 110 (429)
T ss_pred HHHhCCCCCc
Confidence 8988876544
No 429
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=68.01 E-value=43 Score=35.82 Aligned_cols=49 Identities=22% Similarity=0.338 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 33 ARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 33 arkIts~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~ 81 (272)
|--|+-+-+..+|.+|-.|-.-||..|.-..+.-..||+|+..||.+|.
T Consensus 319 ALNiVKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk 367 (832)
T KOG2077|consen 319 ALNIVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELK 367 (832)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567788899999999999999999998888888889999999999997
No 430
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=68.00 E-value=1e+02 Score=28.40 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHhhhHHH
Q 024140 93 RLSKENEALTNTVRKLQRDVSK 114 (272)
Q Consensus 93 kL~~E~~~La~TvKkL~rDvaK 114 (272)
.|.+++..|.++.+-|.+.-.+
T Consensus 78 ~lEE~~~~L~aq~rqlEkE~q~ 99 (193)
T PF14662_consen 78 SLEEENRSLLAQARQLEKEQQS 99 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444333
No 431
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=67.99 E-value=74 Score=32.87 Aligned_cols=40 Identities=30% Similarity=0.376 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 024140 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (272)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq~ 128 (272)
++.|--++|..|-..|. .+|-+.+.|||.=||-|..-|-+
T Consensus 187 e~V~lentlEQEqEalv---N~LwKrmdkLe~ekr~Lq~KlDq 226 (552)
T KOG2129|consen 187 EAVQLENTLEQEQEALV---NSLWKRMDKLEQEKRYLQKKLDQ 226 (552)
T ss_pred HHHHHhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhcC
Confidence 44455566667776664 46777889999999999988833
No 432
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=67.84 E-value=1.2e+02 Score=29.12 Aligned_cols=69 Identities=25% Similarity=0.328 Sum_probs=46.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHh
Q 024140 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQAD----KERLSKENEALTNTVRKLQ 109 (272)
Q Consensus 40 A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee----~~kL~~E~~~La~TvKkL~ 109 (272)
+|..|...|+.|..++-.++..-+.....|+.....+..++. |...+.+. |-.|+++|..|.+-.+++.
T Consensus 26 ~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~-k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~ 98 (309)
T PF09728_consen 26 ALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELS-KAILAKSKLESLCRELQKQNKKLKEESKRRA 98 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888889999999888888888888888888888777776 22222222 3555666666555555443
No 433
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=67.75 E-value=1e+02 Score=28.47 Aligned_cols=27 Identities=30% Similarity=0.516 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 55 LRSQLAEKDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 55 LR~~L~EKd~~i~~Lq~r~s~le~~l~ 81 (272)
++.++.+-+..+..|+.++..++..+.
T Consensus 133 ~~~~~~~~~~~i~~l~~~~~~~~~~~~ 159 (301)
T PF14362_consen 133 FDAQIARLDAEIAALQAEIDQLEKEID 159 (301)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555554
No 434
>PF09302 XLF: XLF (XRCC4-like factor); InterPro: IPR015381 XLF (also called Cernunnos) interacts with the XRCC4-DNA ligase IV complex to promote DNA non-homologous end-joining. It directly interacts with the XRCC4-Ligase IV complex and siRNA-mediated downregulation of XLF in human cell lines leads to radio-sensitivity and impaired DNA non-homologous end-joining []. XLF is homologous to the yeast non-homologous end-joining factor Nej1 []. ; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z56_A 3RWR_D 3Q4F_A 3SR2_H 2R9A_A 2QM4_C.
Probab=67.74 E-value=7.5 Score=33.04 Aligned_cols=43 Identities=26% Similarity=0.386 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 31 DVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIE 74 (272)
Q Consensus 31 dlarkIts~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s 74 (272)
.+++.++.- +...+..|+.++..|...|.+||..|..|.++++
T Consensus 128 ~~~~~L~~P-ll~~~~~l~~~~~~L~~~l~~KD~~i~~l~~~~~ 170 (171)
T PF09302_consen 128 QFLSHLNSP-LLRMSSALQRQVESLKDLLKEKDKEIEKLRDKLE 170 (171)
T ss_dssp HHHHHTHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 555555543 3445678888999999999999999999987653
No 435
>PRK00736 hypothetical protein; Provisional
Probab=67.72 E-value=28 Score=26.42 Aligned_cols=39 Identities=13% Similarity=0.229 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024140 69 LQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRD 111 (272)
Q Consensus 69 Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rD 111 (272)
+++|+..||..+ ..-.+-+..|.+.--.....+-+|.|.
T Consensus 3 ~e~Ri~~LE~kl----afqe~tie~Ln~~v~~Qq~~i~~L~~q 41 (68)
T PRK00736 3 AEERLTELEIRV----AEQEKTIEELSDQLAEQWKTVEQMRKK 41 (68)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555444322 233344444443333333333334333
No 436
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=67.49 E-value=56 Score=33.74 Aligned_cols=64 Identities=13% Similarity=0.205 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 024140 53 SALRSQLAEKDSRIAELQSQIESIYSSLS-DKLGQA--QADKERLSKENEALTNTVRKLQRDVSKLE 116 (272)
Q Consensus 53 ~~LR~~L~EKd~~i~~Lq~r~s~le~~l~-~rL~~a--~ee~~kL~~E~~~La~TvKkL~rDvaKLE 116 (272)
..++.++.+-++.|..|++++..||.+|. .-+-.. ..+..+|.+|.+.+...+..|...-..|+
T Consensus 559 ~~~~~~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~ 625 (638)
T PRK10636 559 QPLRKEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQ 625 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555556666666666666666664 101000 11345555555555555555555554444
No 437
>PRK00295 hypothetical protein; Provisional
Probab=67.47 E-value=30 Score=26.25 Aligned_cols=19 Identities=32% Similarity=0.343 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024140 52 HSALRSQLAEKDSRIAELQ 70 (272)
Q Consensus 52 ~~~LR~~L~EKd~~i~~Lq 70 (272)
+..|=.+++--+..|.+|.
T Consensus 7 i~~LE~kla~qE~tie~Ln 25 (68)
T PRK00295 7 VTELESRQAFQDDTIQALN 25 (68)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333343344444443
No 438
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=67.41 E-value=53 Score=25.45 Aligned_cols=70 Identities=11% Similarity=0.178 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 024140 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS----DKLGQAQADKERLSKENEALTNTVRKLQRDVSK 114 (272)
Q Consensus 45 Vs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~----~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaK 114 (272)
+-.+|..|..|+..=-.=-=.|+-|++++..+-..-. ....+..-++..|.+|...+...++.+.+++.+
T Consensus 2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~~~e~ 75 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEAEKAIEE 75 (75)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
No 439
>KOG3759 consensus Uncharacterized RUN domain protein [Signal transduction mechanisms]
Probab=67.35 E-value=1e+02 Score=32.27 Aligned_cols=106 Identities=25% Similarity=0.376 Sum_probs=59.9
Q ss_pred HhcCCCCchhhHHHHHHHHHHHHHHh-----hhhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-------
Q 024140 19 LQVLPSDPFEQLDVARKITSIAISTR-----VSDLESE----HSALRSQLAEKDSRIAELQSQIESIYSS-LS------- 81 (272)
Q Consensus 19 l~vLP~DP~EQLdlarkIts~A~atR-----Vs~LE~E----~~~LR~~L~EKd~~i~~Lq~r~s~le~~-l~------- 81 (272)
-++.--||-||+.|-|-.--.|+..= +..++++ ...|-.+-..-.+.|.+|++++..||.- +.
T Consensus 95 rQ~vea~p~er~~LLrdLedFAF~Gcpd~~~lq~~~s~~~~~~~~lekq~e~qkeLi~QLk~Ql~dLE~~AYe~Geg~LP 174 (621)
T KOG3759|consen 95 RQMVEADPSERLKLLRDLEDFAFKGCPDMNELQRLRSESESGNDVLEKQNERQKELIKQLKEQLEDLERTAYENGEGELP 174 (621)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcCCCcccccccccccccccchhhhhhcchHHHHHHHHHHHHHHHHHHHHhcCCCcCc
Confidence 34566799999999999999988742 1223332 1111111111123344444444444431 00
Q ss_pred ------------HHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 024140 82 ------------DKLG----------------------QAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLK 127 (272)
Q Consensus 82 ------------~rL~----------------------~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq 127 (272)
+.|+ .|..+...=.|||..|.+++|.--+|+.+.=+| ||
T Consensus 175 q~viLekQk~ilDeLr~Kl~lnl~i~~lsteelr~qVD~A~~q~VnP~k~KeQLV~QLkTQItDLErFInF-------lQ 247 (621)
T KOG3759|consen 175 QTVILEKQKAILDELREKLELNLDIDKLSTEELRRQVDDALKQLVNPFKEKEQLVDQLKTQITDLERFINF-------LQ 247 (621)
T ss_pred hHHHHHHHHHHHHHHHHHhhccCCcccccHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHH-------HH
Confidence 2222 233333444689999999999988888777776 66
Q ss_pred cccc
Q 024140 128 DDED 131 (272)
Q Consensus 128 ~d~~ 131 (272)
+|.-
T Consensus 248 ~e~~ 251 (621)
T KOG3759|consen 248 DEVG 251 (621)
T ss_pred Hhhh
Confidence 6643
No 440
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=67.27 E-value=1.1e+02 Score=32.76 Aligned_cols=71 Identities=32% Similarity=0.393 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---HHHHHHHHHH
Q 024140 51 EHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRD---VSKLEVFRKT 121 (272)
Q Consensus 51 E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rD---vaKLE~FKk~ 121 (272)
++..+-..|.-||.+|..|-.-|..++.+++.-+...-..+.+|.++...+...+.+|.+. -+--|..|+-
T Consensus 279 ~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~sDYeeIK~E 352 (629)
T KOG0963|consen 279 DIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNSRSDYEEIKKE 352 (629)
T ss_pred chHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHH
Confidence 3677788888999999999999999999998222222223334444444444333333322 2334555554
No 441
>PHA03161 hypothetical protein; Provisional
Probab=66.97 E-value=50 Score=29.23 Aligned_cols=9 Identities=44% Similarity=0.475 Sum_probs=4.5
Q ss_pred hHHHHHHHH
Q 024140 29 QLDVARKIT 37 (272)
Q Consensus 29 QLdlarkIt 37 (272)
|++-+++..
T Consensus 39 Qf~~t~~~l 47 (150)
T PHA03161 39 QLDHTKKSL 47 (150)
T ss_pred HHHHHHHHH
Confidence 555555443
No 442
>PRK14160 heat shock protein GrpE; Provisional
Probab=66.94 E-value=1e+02 Score=28.38 Aligned_cols=39 Identities=10% Similarity=0.328 Sum_probs=30.4
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 43 tRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~ 81 (272)
-.+..|+.++..|.+++.+....+.+|++++-.+.+.+.
T Consensus 54 ~~~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~Aefe 92 (211)
T PRK14160 54 VKIEELKDENNKLKEENKKLENELEALKDRLLRTVAEYD 92 (211)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788888888888888888888888877777776
No 443
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=66.86 E-value=52 Score=36.84 Aligned_cols=28 Identities=21% Similarity=0.325 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 024140 87 AQADKERLSKENEALTNTVRKLQRDVSK 114 (272)
Q Consensus 87 a~ee~~kL~~E~~~La~TvKkL~rDvaK 114 (272)
-++-+..|.++++.|...+-.-++++..
T Consensus 474 ~~~~~~~l~~~~~~~k~~L~~~~~el~~ 501 (1041)
T KOG0243|consen 474 QLEIKELLKEEKEKLKSKLQNKNKELES 501 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555444444444433
No 444
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=66.76 E-value=1.1e+02 Score=31.90 Aligned_cols=79 Identities=14% Similarity=0.299 Sum_probs=41.7
Q ss_pred HHHHHHhhhhh--HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 38 SIAISTRVSDL--ESEHSALRSQLAEKDS-------RIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKL 108 (272)
Q Consensus 38 s~A~atRVs~L--E~E~~~LR~~L~EKd~-------~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL 108 (272)
...|.+|...| +.++..+++++.+=.. .|....+++..|-.+.++....+..-.+.|+.+++.+.+.++.|
T Consensus 177 ~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~~~l 256 (555)
T TIGR03545 177 QQKWKKRKKDLPNKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLKADLAEL 256 (555)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 46777788788 5667777777763222 22233333333434444333334444555555666665555555
Q ss_pred h----hhHHHHH
Q 024140 109 Q----RDVSKLE 116 (272)
Q Consensus 109 ~----rDvaKLE 116 (272)
. .|+++|+
T Consensus 257 k~ap~~D~~~L~ 268 (555)
T TIGR03545 257 KKAPQNDLKRLE 268 (555)
T ss_pred HhccHhHHHHHH
Confidence 4 3555554
No 445
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=66.61 E-value=62 Score=31.54 Aligned_cols=30 Identities=27% Similarity=0.328 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 52 HSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 52 ~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~ 81 (272)
|..|...|+.|-+.....|+.|+.|-.++.
T Consensus 215 ia~LseELa~k~Ee~~rQQEEIt~Llsqiv 244 (306)
T PF04849_consen 215 IASLSEELARKTEENRRQQEEITSLLSQIV 244 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666666666665554
No 446
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=66.60 E-value=1e+02 Score=27.97 Aligned_cols=41 Identities=24% Similarity=0.443 Sum_probs=20.4
Q ss_pred HHHhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 41 ISTRVSDLESEHSAL-RSQLAEKDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 41 ~atRVs~LE~E~~~L-R~~L~EKd~~i~~Lq~r~s~le~~l~ 81 (272)
|..|+..++.++..- +++-..-+..++.|++.+..|+..|.
T Consensus 10 i~e~~~~f~~~le~e~~~Rr~~ee~r~~~i~e~i~~Le~~l~ 51 (247)
T PF06705_consen 10 INERFSGFESDLENEKRQRREQEEQRFQDIKEQIQKLEKALE 51 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 344555555554322 33333344455566666666666555
No 447
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=66.44 E-value=59 Score=36.64 Aligned_cols=52 Identities=21% Similarity=0.304 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHH---hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 30 LDVARKITSIAIST---RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 30 LdlarkIts~A~at---RVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~ 81 (272)
|+.-+++..+.+-. |+..||+.+..|+.++.+.+..+..|..+++++.+.+.
T Consensus 386 ln~~~r~~~~~ld~~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~ 440 (1141)
T KOG0018|consen 386 LNRNMRSDQDTLDHELERRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYE 440 (1141)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556777777654 78899999999999999999999999999998888876
No 448
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=66.21 E-value=1.5e+02 Score=29.89 Aligned_cols=26 Identities=19% Similarity=0.325 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHH
Q 024140 92 ERLSKENEALTNTVRKLQRDVSKLEV 117 (272)
Q Consensus 92 ~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (272)
.++.+||+.-...+..|+..|.-||.
T Consensus 367 ~~v~~Er~~~~~~l~~~~~~~~~le~ 392 (582)
T PF09731_consen 367 EKVEQERNGRLAKLAELNSRLKALEE 392 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777766666666666665553
No 449
>KOG2896 consensus UV radiation resistance associated protein [General function prediction only]
Probab=66.11 E-value=98 Score=31.10 Aligned_cols=26 Identities=19% Similarity=0.243 Sum_probs=13.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHH
Q 024140 45 VSDLESEHSALRSQLAEKDSRIAELQ 70 (272)
Q Consensus 45 Vs~LE~E~~~LR~~L~EKd~~i~~Lq 70 (272)
+..+-+++..+|.+..+-..++..|+
T Consensus 82 ~q~~~~q~~~~~~~~~~v~~ek~rl~ 107 (377)
T KOG2896|consen 82 EQCLSAQVQSMRVEMKEVSEEKLRLQ 107 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455556666555555555554
No 450
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=65.80 E-value=69 Score=29.49 Aligned_cols=39 Identities=18% Similarity=0.333 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHH--------HHHHHHhhhHHHHHHHHHHHHhh
Q 024140 87 AQADKERLSKENEALT--------NTVRKLQRDVSKLEVFRKTLVQS 125 (272)
Q Consensus 87 a~ee~~kL~~E~~~La--------~TvKkL~rDvaKLE~FKk~LmqS 125 (272)
-+++..||+.|=..+- +-|-.-...+.-||.=...|++.
T Consensus 84 dRqKgrklarEWQrFGryta~vmr~eV~~Y~~KL~eLE~kq~~L~rE 130 (195)
T PF10226_consen 84 DRQKGRKLAREWQRFGRYTASVMRQEVAQYQQKLKELEDKQEELIRE 130 (195)
T ss_pred hHHHhHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555666644332 22222233333444446666654
No 451
>PF00523 Fusion_gly: Fusion glycoprotein F0; InterPro: IPR000776 The fusion glycoproteins from this family are found in ssRNA negative-strand viruses. This protein directs fusion of viral and cellular membranes, resulting in viral penetration, and can direct fusion of infected cells with adjoining cells, resulting in the formation of syncytia. The mature form is a dimer of polypeptides F1 and F2 linked by a disulphide bond [].; GO: 0006948 induction by virus of host cell-cell fusion; PDB: 2FYZ_D 3MAW_B 4DAG_A 1G5G_D 1SVF_A 2B9B_A 1G2C_M 3RRT_A 3RRR_D 3RKI_A ....
Probab=65.65 E-value=61 Score=33.36 Aligned_cols=74 Identities=15% Similarity=0.232 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 024140 33 ARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (272)
Q Consensus 33 arkIts~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDv 112 (272)
|-+||+-.--.+..++++++.+||+.+..=.+.+.+|++=+..+-.+++ +.|+. =|+.|.-.+.+|.+++
T Consensus 105 aaqitA~vAl~~a~~na~~I~~lk~si~~tN~AV~~l~~g~~~~~~av~-----~lQd~-----IN~~i~Pain~l~C~v 174 (490)
T PF00523_consen 105 AAQITAAVALHQAQQNAANILRLKESIQSTNEAVQELTNGLSQLAVAVQ-----ALQDF-----INNEIIPAINQLSCEV 174 (490)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH-----HHHTHHHHHHHHHHHH
T ss_pred hhhhhhhhhhHhhHHhHHHHHHHhhhhhcccccceecchHHHHHHHHHH-----HHHHH-----HHHHhhhhhhhcchhh
Confidence 5678877777889999999999999999999999999998888887775 22222 2567788888888888
Q ss_pred HHHH
Q 024140 113 SKLE 116 (272)
Q Consensus 113 aKLE 116 (272)
..++
T Consensus 175 ~~~~ 178 (490)
T PF00523_consen 175 ADNQ 178 (490)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 452
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=65.40 E-value=73 Score=28.45 Aligned_cols=10 Identities=10% Similarity=0.102 Sum_probs=3.7
Q ss_pred HHHHHHHHHh
Q 024140 100 ALTNTVRKLQ 109 (272)
Q Consensus 100 ~La~TvKkL~ 109 (272)
.+...++.+.
T Consensus 113 ~~~~~l~~~~ 122 (322)
T TIGR01730 113 AAQADLEAAK 122 (322)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 453
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=65.38 E-value=41 Score=29.36 Aligned_cols=55 Identities=22% Similarity=0.279 Sum_probs=44.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENE 99 (272)
Q Consensus 45 Vs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~ 99 (272)
|-.+|....+-|++|..-+..|..|+.|+...+..|.+|-.+..+-..++.++..
T Consensus 3 ve~a~rny~~a~aeL~~a~~~I~~~q~r~a~a~~~~~~r~seldqA~~~~~eae~ 57 (136)
T PF11570_consen 3 VEVAERNYEAARAELDQADEDIATLQERQASAEQALNGRRSELDQANKKVKEAEI 57 (136)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 4456777788899999999999999999999999998777777777777766443
No 454
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=65.38 E-value=1.6e+02 Score=29.68 Aligned_cols=89 Identities=22% Similarity=0.221 Sum_probs=48.0
Q ss_pred HHHHHhhhhhHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH---HHHHHHH----HHHHHHHHHH-H
Q 024140 39 IAISTRVSDLESEHSALRSQLA-----------EKDSRIAELQSQIESIYSSLS---DKLGQAQ----ADKERLSKEN-E 99 (272)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~L~-----------EKd~~i~~Lq~r~s~le~~l~---~rL~~a~----ee~~kL~~E~-~ 99 (272)
..+......||.++.+|+.++. |-.-.+.-|+++++.+..-.+ ..|++-+ ++.+=+..|| .
T Consensus 222 ~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK~~Yqs~eRaR 301 (395)
T PF10267_consen 222 REIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASMEEKMAYQSYERAR 301 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 4567777888888888887544 222333344444444443333 3333332 2222233333 3
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 024140 100 ALTNTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (272)
Q Consensus 100 ~La~TvKkL~rDvaKLE~FKk~LmqSLq~d 129 (272)
.+...+...+--|+||| +.++.|-.|-+
T Consensus 302 di~E~~Es~qtRisklE--~~~~Qq~~q~e 329 (395)
T PF10267_consen 302 DIWEVMESCQTRISKLE--QQQQQQVVQLE 329 (395)
T ss_pred HHHHHHHHHHHHHHHHH--HHHhhhhhhhc
Confidence 44556667777788888 66666665554
No 455
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=65.02 E-value=96 Score=31.59 Aligned_cols=38 Identities=18% Similarity=0.337 Sum_probs=18.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 44 RVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~ 81 (272)
.|..+..|+...+..|......+..|+.-+..|..+|.
T Consensus 282 ~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe 319 (522)
T PF05701_consen 282 SLASAKKELEEAKKELEKAKEEASSLRASVESLRSELE 319 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555554444443
No 456
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=64.97 E-value=43 Score=33.84 Aligned_cols=67 Identities=21% Similarity=0.302 Sum_probs=39.7
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHH----------HHH---H-----HHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Q 024140 40 AISTRVSDLESEHSALRSQLAEK----------DSR---I-----AELQSQIESIYSSLS-------DKLGQAQADKERL 94 (272)
Q Consensus 40 A~atRVs~LE~E~~~LR~~L~EK----------d~~---i-----~~Lq~r~s~le~~l~-------~rL~~a~ee~~kL 94 (272)
+++.++..++.|+..||.+|.+- ... + ..|++|+..||.+|. .+-.....+.-++
T Consensus 113 ~lk~~l~e~~~El~~l~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~sL~ekl~lld~al~~~~~~~~~~~~~fl~rtl~~ 192 (511)
T PF09787_consen 113 VLKIRLQELDQELRRLRRQLEELQNEKSRILSDESTVSRLQNGAPRSLQEKLSLLDEALKREDGNAITAVVEFLKRTLKK 192 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence 45677888888888888888775 222 2 556777777777666 1122222334444
Q ss_pred HHHHHHHHHHHH
Q 024140 95 SKENEALTNTVR 106 (272)
Q Consensus 95 ~~E~~~La~TvK 106 (272)
..++..|...++
T Consensus 193 e~~~~~L~~~~~ 204 (511)
T PF09787_consen 193 EIERQELEERPK 204 (511)
T ss_pred HHHHHHHHHHHH
Confidence 445555555544
No 457
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=64.90 E-value=91 Score=30.71 Aligned_cols=34 Identities=15% Similarity=0.176 Sum_probs=20.9
Q ss_pred HHhcCCCCchhhHH-----HHHHHH-HHHHHHhhhhhHHH
Q 024140 18 VLQVLPSDPFEQLD-----VARKIT-SIAISTRVSDLESE 51 (272)
Q Consensus 18 il~vLP~DP~EQLd-----larkIt-s~A~atRVs~LE~E 51 (272)
|-..||.-+..+.. |-.+|+ |.||+.++..+.-+
T Consensus 109 i~~~lp~~~~~~~~e~r~~lk~RI~rSEAFKRKllE~kYD 148 (323)
T PF08537_consen 109 INSRLPNRERKSGREERRLLKDRILRSEAFKRKLLEKKYD 148 (323)
T ss_pred hhhhcCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 44566665555444 344555 88888888776544
No 458
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=64.88 E-value=34 Score=27.00 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHH
Q 024140 92 ERLSKENEALTNTVRKLQRDVSKL 115 (272)
Q Consensus 92 ~kL~~E~~~La~TvKkL~rDvaKL 115 (272)
..|.+.-+.+..++..|+..|+..
T Consensus 38 ~~l~~klDa~~~~l~~l~~~V~~I 61 (75)
T PF05531_consen 38 TELNKKLDAQSAQLTTLNTKVNEI 61 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555665555444
No 459
>PF14739 DUF4472: Domain of unknown function (DUF4472)
Probab=64.86 E-value=84 Score=26.36 Aligned_cols=31 Identities=26% Similarity=0.457 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 024140 82 DKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (272)
Q Consensus 82 ~rL~~a~ee~~kL~~E~~~La~TvKkL~rDv 112 (272)
.++..+.++..+|..|--.|-..+..+..+.
T Consensus 63 ~~~~~~~~~~~~l~~e~~~l~~~~~a~~k~~ 93 (108)
T PF14739_consen 63 HRLAEAQEDRQELQEEYVSLKKNYQALPKAF 93 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5566666777777777666655555554443
No 460
>COG5570 Uncharacterized small protein [Function unknown]
Probab=64.77 E-value=13 Score=27.88 Aligned_cols=18 Identities=22% Similarity=0.370 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 024140 64 SRIAELQSQIESIYSSLS 81 (272)
Q Consensus 64 ~~i~~Lq~r~s~le~~l~ 81 (272)
.|+++|++|...||++++
T Consensus 5 shl~eL~kkHg~le~ei~ 22 (57)
T COG5570 5 SHLAELEKKHGNLEREIQ 22 (57)
T ss_pred HHHHHHHHhhchHHHHHH
Confidence 466777777777777776
No 461
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=64.72 E-value=22 Score=31.36 Aligned_cols=33 Identities=21% Similarity=0.472 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 49 ESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 49 E~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~ 81 (272)
..|+.+|..+|-|....+.+++.+|+.|-..+.
T Consensus 104 D~Ea~~L~~KLkeEq~kv~~ME~~v~elas~m~ 136 (152)
T PF11500_consen 104 DAEAMRLAEKLKEEQEKVAEMERHVTELASQMA 136 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555544444
No 462
>PF15456 Uds1: Up-regulated During Septation
Probab=64.65 E-value=87 Score=26.49 Aligned_cols=30 Identities=27% Similarity=0.424 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 51 EHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 51 E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~ 81 (272)
|+..|+.++.-=+..|..++.++. ||.-+.
T Consensus 23 EVe~LKkEl~~L~~R~~~lr~kl~-le~k~R 52 (124)
T PF15456_consen 23 EVEELKKELRSLDSRLEYLRRKLA-LESKIR 52 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 566666666666666666666655 554443
No 463
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=64.64 E-value=97 Score=33.46 Aligned_cols=65 Identities=28% Similarity=0.326 Sum_probs=33.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 024140 44 RVSDLESEHSALRSQLAEKDSRI-----------AELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (272)
Q Consensus 44 RVs~LE~E~~~LR~~L~EKd~~i-----------~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDv 112 (272)
-|..|-.|+..||.++.+-.... .+|.+++..++.... ...+....|.+|...+...+..-+..|
T Consensus 367 Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~r----e~qeri~~LE~ELr~l~~~A~E~q~~L 442 (717)
T PF09730_consen 367 EVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSR----EDQERISELEKELRALSKLAGESQGSL 442 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 34455566666666554333332 334444444443332 334566677777777766666644333
No 464
>PF14661 HAUS6_N: HAUS augmin-like complex subunit 6 N-terminus
Probab=64.59 E-value=1.1e+02 Score=27.86 Aligned_cols=56 Identities=13% Similarity=0.128 Sum_probs=41.8
Q ss_pred chhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 26 PFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 26 P~EQLdlarkIts~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~ 81 (272)
+.-.+.++.+....++..-+........++.+.+.+++..+..+++....|+..+.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~a~~~~~r~~~~~~~~~~~~~~~~~~~~aq~L~~k~r 195 (247)
T PF14661_consen 140 SALRLAEAFRLKPQDLHELLARILAHRNSFLQILQEKDAARQKYQEFAQLLRKKYR 195 (247)
T ss_pred hhhhhhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44467777777777777777777777888888999999998888777766665554
No 465
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=64.36 E-value=70 Score=28.43 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHhhhHHHHHH
Q 024140 96 KENEALTNTVRKLQRDVSKLEV 117 (272)
Q Consensus 96 ~E~~~La~TvKkL~rDvaKLE~ 117 (272)
.|-+.+...+.+|..-|+|+|.
T Consensus 125 ~e~ee~~~~l~~le~~~~~~e~ 146 (175)
T PRK13182 125 REMEEMLERLQKLEARLKKLEP 146 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3445556666667666776653
No 466
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=64.26 E-value=1.1e+02 Score=27.38 Aligned_cols=86 Identities=22% Similarity=0.328 Sum_probs=49.6
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH------HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024140 39 IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS--DK------LGQAQADKERLSKENEALTNTVRKLQR 110 (272)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~--~r------L~~a~ee~~kL~~E~~~La~TvKkL~r 110 (272)
..+..|+...+.-+..|-.+...=...|..+.+--..++ .|. ++ +..-..++..|+.||..|-.+++.-..
T Consensus 13 k~L~~rL~~~d~~ad~Ll~qa~~l~~~i~sm~~y~eei~-~l~~~~~~~~~~~l~~En~qi~~Lq~EN~eL~~~leEhq~ 91 (181)
T PF05769_consen 13 KRLVERLKDHDNAADSLLSQAEALNKQIESMRQYQEEIQ-ELNELSKNRPRAGLQQENRQIRQLQQENRELRQSLEEHQS 91 (181)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhcccchhHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666655544444444431111111 111 11 334445568999999999999998888
Q ss_pred hHHH-HHHHHHHHHhh
Q 024140 111 DVSK-LEVFRKTLVQS 125 (272)
Q Consensus 111 DvaK-LE~FKk~LmqS 125 (272)
-+.. +..||++..+=
T Consensus 92 alelIM~KyReq~~~l 107 (181)
T PF05769_consen 92 ALELIMSKYREQMSQL 107 (181)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7765 45566554433
No 467
>PLN02678 seryl-tRNA synthetase
Probab=64.22 E-value=91 Score=31.58 Aligned_cols=42 Identities=12% Similarity=0.223 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 024140 88 QADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (272)
Q Consensus 88 ~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq~d 129 (272)
.++..+|.+|-..|...++.|..++..|+.=-..+|..|-+-
T Consensus 70 ~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~iPNi 111 (448)
T PLN02678 70 KEDATELIAETKELKKEITEKEAEVQEAKAALDAKLKTIGNL 111 (448)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 355566777777778888888888887777777778777543
No 468
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=64.20 E-value=79 Score=26.25 Aligned_cols=85 Identities=21% Similarity=0.322 Sum_probs=38.1
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 024140 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFR 119 (272)
Q Consensus 43 tRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FK 119 (272)
.-+..|..+...|-....++...+.+++.++..+-..+. ........+...+ ..+=+......+|...+...|.-=
T Consensus 34 ~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l-~~~~s~~~l~~~L~~~~~e~eeeS 112 (150)
T PF07200_consen 34 QEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDEL-SSNYSPDALLARLQAAASEAEEES 112 (150)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCCHHHHHHHHHHHHHHHHHHH
Confidence 334444444555544444555555555555554444333 2222333333333 334444455666666666666655
Q ss_pred HHHHhhccc
Q 024140 120 KTLVQSLKD 128 (272)
Q Consensus 120 k~LmqSLq~ 128 (272)
..|.+.+.+
T Consensus 113 e~lae~fl~ 121 (150)
T PF07200_consen 113 EELAEEFLD 121 (150)
T ss_dssp HHHC-S-SS
T ss_pred HHHHHHHhC
Confidence 555555543
No 469
>PRK11415 hypothetical protein; Provisional
Probab=64.10 E-value=21 Score=27.43 Aligned_cols=59 Identities=17% Similarity=0.249 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024140 52 HSALRSQLAEKDSRIAELQSQIESIYSSLSDKLG-----QAQADKERLSKENEALTNTVRKLQRD 111 (272)
Q Consensus 52 ~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~-----~a~ee~~kL~~E~~~La~TvKkL~rD 111 (272)
-..+=.+|...|.++..|.+++..|+.++. ++. ....+...|.++|=.|-+.+-.+-+.
T Consensus 5 ~~d~I~~Lk~~D~~F~~L~~~h~~Ld~~I~-~lE~~~~~~~d~~i~~LKk~KL~LKDeI~~~L~~ 68 (74)
T PRK11415 5 YRDLISRLKNENPRFMSLFDKHNKLDHEIA-RKEGSDGRGYNAEVVRMKKQKLQLKDEMLKILQQ 68 (74)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHH-HHHcCCCCCCHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 344556788899999999999999999996 211 23566778888887777766555443
No 470
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=63.97 E-value=1.4e+02 Score=30.99 Aligned_cols=18 Identities=33% Similarity=0.508 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 024140 93 RLSKENEALTNTVRKLQR 110 (272)
Q Consensus 93 kL~~E~~~La~TvKkL~r 110 (272)
....|+..|-.++-||.|
T Consensus 452 ~~eqe~ek~~kqiekLK~ 469 (488)
T PF06548_consen 452 DAEQENEKAKKQIEKLKR 469 (488)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344434444444443
No 471
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=63.89 E-value=64 Score=24.71 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024140 85 GQAQADKERLSKENEALTNTVR 106 (272)
Q Consensus 85 ~~a~ee~~kL~~E~~~La~TvK 106 (272)
....+...+|....+.|..++.
T Consensus 75 ~~l~~q~~~l~~~l~~l~~~~~ 96 (127)
T smart00502 75 KVLEQQLESLTQKQEKLSHAIN 96 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444433
No 472
>PF05859 Mis12: Mis12 protein; InterPro: IPR008685 Kinetochores are the chromosomal sites for spindle interaction and play a vital role for chromosome segregation. Fission Saccharomyces cerevisiae kinetochore protein Mis12, is required for correct spindle morphogenesis, determining metaphase spindle length []. Thirty-five to sixty percent extension of metaphase spindle length takes place in Mis12 mutants []. It has been shown that Mis12 might genetically interact with Mal2p [].; GO: 0007049 cell cycle, 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=63.81 E-value=5.9 Score=33.46 Aligned_cols=55 Identities=29% Similarity=0.394 Sum_probs=39.0
Q ss_pred CCCChhHHH--hcCCCCchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 024140 11 TFDLPEEVL--QVLPSDPFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQ 70 (272)
Q Consensus 11 dF~lp~eil--~vLP~DP~EQLdlarkIts~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq 70 (272)
=|.+|.++| .|+...+++-+++.. .-...-..|+.|+..||.+|.+.-..-..|+
T Consensus 86 if~IP~~llp~~~~~l~~~~~~~~~~-----~~~~~~~~ld~el~~lr~kL~~~~~~~~~L~ 142 (144)
T PF05859_consen 86 IFSIPEDLLPEDWIRLYHHEGLDFSS-----NQLEEDYELDAELEQLRRKLEEQRKLNAELE 142 (144)
T ss_pred cccCChhhcchhhhcccccccccccc-----ccccchhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 478896665 366667777666654 3344556888999999999888777776665
No 473
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=63.77 E-value=1.5e+02 Score=28.97 Aligned_cols=81 Identities=15% Similarity=0.279 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024140 32 VARKITSIAISTRVSDLESEHSALRSQLA-EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQR 110 (272)
Q Consensus 32 larkIts~A~atRVs~LE~E~~~LR~~L~-EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~r 110 (272)
.......+|-.-|. ....||..+. =-.+.+.+|+.+....+.+|..|+.+..+-..+|+.+.......+..+.+
T Consensus 205 ~s~~ni~~a~~e~~-----~S~~LR~~i~~~l~~~~~dl~~Q~~~vn~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~ 279 (384)
T PF03148_consen 205 FSNENIQRAEKERQ-----SSAQLREDIDSILEQTANDLRAQADAVNAALRKRIHETQEAKNELEWQLKKTLQEIAEMEK 279 (384)
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 33444444444444 3466777766 45566788888888888888877777777777777777666666666666
Q ss_pred hHHHHHH
Q 024140 111 DVSKLEV 117 (272)
Q Consensus 111 DvaKLE~ 117 (272)
++..||.
T Consensus 280 ~i~~L~~ 286 (384)
T PF03148_consen 280 NIEDLEK 286 (384)
T ss_pred HHHHHHH
Confidence 6665554
No 474
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=63.71 E-value=61 Score=34.04 Aligned_cols=31 Identities=19% Similarity=0.174 Sum_probs=22.4
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHhhccccccC
Q 024140 102 TNTVRKLQRDVSKLEVFRKTLVQSLKDDEDA 132 (272)
Q Consensus 102 a~TvKkL~rDvaKLE~FKk~LmqSLq~d~~~ 132 (272)
......|.||+.-.+.+=..|++..++-.-.
T Consensus 369 e~~~~~L~R~~~~~~~lY~~lL~r~~e~~i~ 399 (726)
T PRK09841 369 QQEVLRLSRDVEAGRAVYLQLLNRQQELSIS 399 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455568888888888888888887765443
No 475
>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=63.64 E-value=83 Score=28.62 Aligned_cols=80 Identities=10% Similarity=0.177 Sum_probs=47.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 024140 44 RVSDLESEHSALRSQLAEKDSRIAELQS---QIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRK 120 (272)
Q Consensus 44 RVs~LE~E~~~LR~~L~EKd~~i~~Lq~---r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk 120 (272)
+|..+|.++..|+.++..=-..+..+-+ -+.... ..+...+.+-.+....-+..+.++++...-+..|++++.
T Consensus 3 ~i~~~E~d~~~Le~~l~Kl~K~~~~~~dag~~~~~a~----~~F~~~l~d~~~~~~~De~i~~~l~kF~~~l~ei~~~~~ 78 (200)
T cd07638 3 ALEDVEGDVAELELKLDKLVKLCIGMIDAGKAFCQAN----KQFMNGIRDLAQYSSKDAVIETSLTKFSDTLQEMINYHT 78 (200)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 5778888888888887654444433322 222222 233344444444444555666777777777777777777
Q ss_pred HHHhhcc
Q 024140 121 TLVQSLK 127 (272)
Q Consensus 121 ~LmqSLq 127 (272)
.|+.-.+
T Consensus 79 ~L~~q~~ 85 (200)
T cd07638 79 ILFDQAQ 85 (200)
T ss_pred HHHHHHH
Confidence 6665544
No 476
>PRK10865 protein disaggregation chaperone; Provisional
Probab=63.60 E-value=33 Score=36.98 Aligned_cols=14 Identities=29% Similarity=0.499 Sum_probs=7.2
Q ss_pred cCCCCchhhHHHHH
Q 024140 21 VLPSDPFEQLDVAR 34 (272)
Q Consensus 21 vLP~DP~EQLdlar 34 (272)
.||....+=+|.+-
T Consensus 385 ~~pdkAi~LiD~aa 398 (857)
T PRK10865 385 QLPDKAIDLIDEAA 398 (857)
T ss_pred CCChHHHHHHHHHh
Confidence 45555555555443
No 477
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=63.53 E-value=32 Score=32.13 Aligned_cols=57 Identities=18% Similarity=0.247 Sum_probs=33.9
Q ss_pred HhcCCCCchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 024140 19 LQVLPSDPFEQLDVARKITSIAISTRVSDLESEHSALRSQL---AEKDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 19 l~vLP~DP~EQLdlarkIts~A~atRVs~LE~E~~~LR~~L---~EKd~~i~~Lq~r~s~le~~l~ 81 (272)
-..||+|||+. --+.=++.+|.+.-..+...--.+ .+++..+.++.+.+..||.+|.
T Consensus 87 ~~iLP~DPy~R------a~arfwa~~id~~~~~~~~~~~~~~~~e~~~~~~~e~~e~l~~lE~el~ 146 (231)
T KOG0406|consen 87 PPILPSDPYER------AQARFWAEYIDKKVFFVGRFVVAAKGGEEQEAAKEELREALKVLEEELG 146 (231)
T ss_pred CCCCCCCHHHH------HHHHHHHHHHHhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHh
Confidence 35799999985 223334445544333333333222 4666677777777777777775
No 478
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=63.36 E-value=1.5e+02 Score=32.11 Aligned_cols=26 Identities=19% Similarity=0.353 Sum_probs=16.4
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhh
Q 024140 100 ALTNTVRKLQRDVSKLEVFRKTLVQS 125 (272)
Q Consensus 100 ~La~TvKkL~rDvaKLE~FKk~LmqS 125 (272)
.|....+...-.|..|+-+++.+++-
T Consensus 238 ele~i~~~~~dqlqel~~l~~a~~q~ 263 (716)
T KOG4593|consen 238 ELEAINKNMKDQLQELEELERALSQL 263 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555677777777777764
No 479
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=63.09 E-value=1.3e+02 Score=31.36 Aligned_cols=79 Identities=20% Similarity=0.292 Sum_probs=0.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH---------------HH
Q 024140 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEA---------------LT 102 (272)
Q Consensus 41 ~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~---------------La 102 (272)
|..||.+|=.+......+..-=..+...|+.|+...|.... ..|+.+.+.+..|++|... |+
T Consensus 418 Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLa 497 (518)
T PF10212_consen 418 YMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMSEHLA 497 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q ss_pred HHHHHHhhhHHHHHHHH
Q 024140 103 NTVRKLQRDVSKLEVFR 119 (272)
Q Consensus 103 ~TvKkL~rDvaKLE~FK 119 (272)
+-..+|..+=.-.++||
T Consensus 498 smNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 498 SMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHh
No 480
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=63.07 E-value=39 Score=28.53 Aligned_cols=30 Identities=17% Similarity=0.360 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024140 82 DKLGQAQADKERLSKENEALTNTVRKLQRD 111 (272)
Q Consensus 82 ~rL~~a~ee~~kL~~E~~~La~TvKkL~rD 111 (272)
.|.....+|+-||..||..|-+-+..|.--
T Consensus 77 qRVdsVKEEnLKLrSENQVLGQYIeNLMSa 106 (120)
T KOG3650|consen 77 QRVDSVKEENLKLRSENQVLGQYIENLMSA 106 (120)
T ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHHHHhh
Confidence 455578899999999999999988877643
No 481
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=63.01 E-value=1.2e+02 Score=31.58 Aligned_cols=92 Identities=23% Similarity=0.418 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhh-----hHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH----------------HHHHH
Q 024140 31 DVARKITSIAISTRVSD-----LESEHSALRSQLAEKDSRI---AELQSQIESIYSSLS----------------DKLGQ 86 (272)
Q Consensus 31 dlarkIts~A~atRVs~-----LE~E~~~LR~~L~EKd~~i---~~Lq~r~s~le~~l~----------------~rL~~ 86 (272)
+|-+||...+++.-+-+ |-.+-+.||.||..--+.+ .+|..||..|-..+. +++.+
T Consensus 387 ~Ls~RiLRv~ikqeilr~~G~~L~~~EE~Lr~Kldtll~~ln~Pnq~k~Rl~~L~e~~r~q~~~~~~~~~~~iD~~~~~e 466 (508)
T KOG3091|consen 387 ELSHRILRVMIKQEILRKRGYALTPDEEELRAKLDTLLAQLNAPNQLKARLDELYEILRMQNSQLKLQESYWIDFDKLIE 466 (508)
T ss_pred HHHHHHHHHHHHHHHHhccCCcCCccHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhhcchhccccceeechhhhHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhH-----HHHHHHHHHH
Q 024140 87 AQADKERLSKENEALTNTVRKLQRDV-----SKLEVFRKTL 122 (272)
Q Consensus 87 a~ee~~kL~~E~~~La~TvKkL~rDv-----aKLE~FKk~L 122 (272)
..+-...-++-..-|.+.||++.||+ ..||-.+|.+
T Consensus 467 ~~e~lt~~~e~l~~Lv~Ilk~d~edi~~~l~E~~~~~~~~~ 507 (508)
T KOG3091|consen 467 MKEHLTQEQEALTKLVNILKGDQEDIKHQLIEDLEICRKSL 507 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHhhhc
No 482
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=62.98 E-value=51 Score=26.06 Aligned_cols=40 Identities=23% Similarity=0.406 Sum_probs=27.2
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 37 TSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (272)
Q Consensus 37 ts~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l 80 (272)
--.|+..||..|+..+..|+..+ .-+.+|.+|+..+..+|
T Consensus 12 dIk~vd~KVdaLq~~V~~l~~~~----~~v~~l~~klDa~~~~l 51 (75)
T PF05531_consen 12 DIKAVDDKVDALQTQVDDLESNL----PDVTELNKKLDAQSAQL 51 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC----CchHHHHHHHHHHHHHH
Confidence 34678888888888887777766 44555666666555554
No 483
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=62.94 E-value=85 Score=33.04 Aligned_cols=84 Identities=21% Similarity=0.266 Sum_probs=54.1
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH----HHHHHHhhhHHH
Q 024140 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALT----NTVRKLQRDVSK 114 (272)
Q Consensus 42 atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La----~TvKkL~rDvaK 114 (272)
+..|.++|.++..|++.+.+=...|..=...++.|+..|. ..|..+..+++++++.-.+|- +.=-.|.|=+.+
T Consensus 346 ~~~vr~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~ 425 (570)
T COG4477 346 LGSVRKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSK 425 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777777777766666555555555555554 455577777777777655553 233456666777
Q ss_pred HHHHHHHHHhh
Q 024140 115 LEVFRKTLVQS 125 (272)
Q Consensus 115 LE~FKk~LmqS 125 (272)
|...||-+-.|
T Consensus 426 l~eikR~mek~ 436 (570)
T COG4477 426 LHEIKRYMEKS 436 (570)
T ss_pred HHHHHHHHHHc
Confidence 88887766554
No 484
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=62.92 E-value=1.3e+02 Score=27.94 Aligned_cols=97 Identities=25% Similarity=0.322 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH---HHH-------HHHHHHHHH
Q 024140 31 DVARKITSIAISTRVSDLESEHSALRSQLAEK-------DSRIAELQSQIESIYSSLS---DKL-------GQAQADKER 93 (272)
Q Consensus 31 dlarkIts~A~atRVs~LE~E~~~LR~~L~EK-------d~~i~~Lq~r~s~le~~l~---~rL-------~~a~ee~~k 93 (272)
+.++|+.. .|..++|..+..+..+|.|- |+...+.-.++.=++..|- .|. .+..++...
T Consensus 45 er~~Kv~e----nr~~kdEE~~e~~e~qLkEAk~iaE~adrK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~ 120 (205)
T KOG1003|consen 45 ERGMKVIE----NRAQKLEEKMEAQEAQLKEAKHIAEKADRKYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRI 120 (205)
T ss_pred HHHHHHHH----HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555543 34455555555555555443 4344444444444444443 344 444444455
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccccc
Q 024140 94 LSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDDED 131 (272)
Q Consensus 94 L~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq~d~~ 131 (272)
+...+.+|..-.-++..++.+.+.-=|.|.--|.+-+-
T Consensus 121 ~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~ 158 (205)
T KOG1003|consen 121 LDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAET 158 (205)
T ss_pred hHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhh
Confidence 55555555555556666666666666777777666543
No 485
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=62.91 E-value=30 Score=27.53 Aligned_cols=40 Identities=20% Similarity=0.329 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 37 TSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESI 76 (272)
Q Consensus 37 ts~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~l 76 (272)
+-..+..|+..||.++.+|..++.++...+.+|+.++..+
T Consensus 64 a~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 64 ARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 486
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=62.89 E-value=18 Score=28.58 Aligned_cols=63 Identities=21% Similarity=0.384 Sum_probs=40.5
Q ss_pred CCChhHHHhcCCCCchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 12 FDLPEEVLQVLPSDPFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESI 76 (272)
Q Consensus 12 F~lp~eil~vLP~DP~EQLdlarkIts~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~l 76 (272)
+.-++.|+-.|-.|=|-.+.+...| .=+..|+..|+..+..|+.++.+...+|..++..+..+
T Consensus 55 i~~~~~vlV~lG~~~~vE~s~~eA~--~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 117 (120)
T PF02996_consen 55 IPDTDKVLVSLGAGYYVEMSLEEAI--EFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQL 117 (120)
T ss_dssp -SSTTEEEEEEETTEEEEEEHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred eCCCCEEEEEeeCCeEEEecHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555544443222 22567888888888888888888888888887666654
No 487
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=62.83 E-value=80 Score=30.37 Aligned_cols=35 Identities=29% Similarity=0.376 Sum_probs=27.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIE 74 (272)
Q Consensus 40 A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s 74 (272)
.+.-||.+|-+++..|+-||.+.-..-.+||.-..
T Consensus 13 d~rL~v~~LhHQvlTLqcQLRDQ~~ahreLQas~d 47 (277)
T PF15030_consen 13 DLRLRVQQLHHQVLTLQCQLRDQGSAHRELQASRD 47 (277)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999888887777775444
No 488
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=62.72 E-value=16 Score=37.50 Aligned_cols=47 Identities=28% Similarity=0.325 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 024140 62 KDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (272)
Q Consensus 62 Kd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDv 112 (272)
|.+-|..|+.||.....+=+ +...+...|..+|..|.+++|||+--|
T Consensus 270 KkeYid~LE~rv~~~taeNq----eL~kkV~~Le~~N~sLl~qL~klQt~v 316 (472)
T KOG0709|consen 270 KKEYIDGLESRVSAFTAENQ----ELQKKVEELELSNRSLLAQLKKLQTLV 316 (472)
T ss_pred HhhHHHHHhhhhhhcccCcH----HHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 44556777777776665554 455556667777777777777776544
No 489
>KOG0517 consensus Beta-spectrin [Cytoskeleton]
Probab=62.60 E-value=59 Score=38.96 Aligned_cols=103 Identities=19% Similarity=0.303 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 32 VARKITSIAISTRVSDLESEHSALRSQLAEKDSRIA-------------ELQSQIESIYSSLSDKLGQAQADKERLSKEN 98 (272)
Q Consensus 32 larkIts~A~atRVs~LE~E~~~LR~~L~EKd~~i~-------------~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~ 98 (272)
+..|-..+.-+.+|...--|+..-|..+.||...+. .||.|+..+|+.|. ....+...|++|-
T Consensus 939 ~~qk~~~L~~a~~V~~f~~eC~et~~wi~dK~~~~e~t~~~~~Dl~gv~alqrrL~~lErdl~----aie~kv~~L~~ea 1014 (2473)
T KOG0517|consen 939 VDQKKVALESALRVETFHLECEETRVWIRDKTRVLESTDRLGNDLAGVMALQRRLQGLERDLA----AIEAKVAALEKEA 1014 (2473)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccCcchHHHHHHHHHHhhhhhHHH----HHHHHHHHHHHHH
Q ss_pred HHHHH----HHHHHhhhHHHHHHHHHHHHhhccccccCCCCccc
Q 024140 99 EALTN----TVRKLQRDVSKLEVFRKTLVQSLKDDEDASTGATR 138 (272)
Q Consensus 99 ~~La~----TvKkL~rDvaKLE~FKk~LmqSLq~d~~~~~~~~~ 138 (272)
+.+.+ ....+++.++.|..+=..|-+.+++-+....++.+
T Consensus 1015 ~~v~~~~Paea~~i~~r~~el~~~w~~l~~~~~~~~~~l~ea~~ 1058 (2473)
T KOG0517|consen 1015 NKVEEEHPAEAQAINARIAELQALWEQLQQRLQEREERLEEAGG 1058 (2473)
T ss_pred HHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 490
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=62.57 E-value=1.6e+02 Score=28.94 Aligned_cols=85 Identities=14% Similarity=0.271 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH---
Q 024140 38 SIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSK--- 114 (272)
Q Consensus 38 s~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaK--- 114 (272)
..+|.+-+......+.+|...+..=-+.|..-++.++.-=..+....+.+.++..+.+++-+.+...|..+.+.+++
T Consensus 229 ~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~Ise 308 (359)
T PF10498_consen 229 KKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISE 308 (359)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q ss_pred -HHHHHHHH
Q 024140 115 -LEVFRKTL 122 (272)
Q Consensus 115 -LE~FKk~L 122 (272)
||..|..+
T Consensus 309 eLe~vK~em 317 (359)
T PF10498_consen 309 ELEQVKQEM 317 (359)
T ss_pred HHHHHHHHH
No 491
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=62.47 E-value=2.5 Score=43.20 Aligned_cols=59 Identities=17% Similarity=0.277 Sum_probs=0.0
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Q 024140 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-------DKLGQAQADKERLSKENEA 100 (272)
Q Consensus 42 atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~-------~rL~~a~ee~~kL~~E~~~ 100 (272)
..+|.+.|.||..|++.|..=.+.+++-|.|+-.=|.+.+ .||...+++..+++.|||.
T Consensus 368 ~~~~e~YEqEI~~LkErL~~S~rkLeEyErrLl~QEqqt~Kll~qyq~RLedSE~RLr~QQ~eKd~ 433 (495)
T PF12004_consen 368 MKEVEKYEQEIQSLKERLRMSHRKLEEYERRLLSQEQQTQKLLLQYQARLEDSEERLRRQQEEKDS 433 (495)
T ss_dssp ------------------------------------------------------------------
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHhhhhHH
No 492
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=62.42 E-value=42 Score=29.32 Aligned_cols=46 Identities=20% Similarity=0.285 Sum_probs=0.0
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSK 96 (272)
Q Consensus 43 tRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~ 96 (272)
..+..||.|-.+++..+..|.+.+++|..+...+. ...++|..+..
T Consensus 1 q~~~~Le~ek~~~~~rI~~K~~~LqEL~~Q~va~k--------nLv~RN~~~~~ 46 (142)
T PF08781_consen 1 QECEELEEEKQRRRERIKKKKEQLQELILQQVAFK--------NLVQRNRQLEQ 46 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHhhh
No 493
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=62.37 E-value=29 Score=27.97 Aligned_cols=39 Identities=28% Similarity=0.368 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 024140 83 KLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKT 121 (272)
Q Consensus 83 rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~ 121 (272)
|++.+..++++|++||..|..-.+--+.+|-.-+.=||+
T Consensus 24 k~~ka~~~~~kL~~en~qlk~Ek~~~~~qvkn~~vrqkn 62 (87)
T PF10883_consen 24 KVKKAKKQNAKLQKENEQLKTEKAVAETQVKNAKVRQKN 62 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 494
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=62.32 E-value=1.2e+02 Score=32.31 Aligned_cols=79 Identities=22% Similarity=0.266 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 024140 47 DLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS----------DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (272)
Q Consensus 47 ~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~----------~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE 116 (272)
.|+.++..|-++|.+||..|...-.-+..|..++. .-+.....+..++|+++..-.+-||.+..-+.-|-
T Consensus 418 ~~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~~qee~~s~~~~~~e~~q~e~~~~Q~~~e~~~~e~~e~~~al~el~ 497 (607)
T KOG0240|consen 418 ILTERIESLYQQLDQKDDQINKQSQLMEKLKEQLLDQEELLSSTRRLYEDIQQELSEIQEENEAAKDEVKEVLTALEELA 497 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhh
Q 024140 117 VFRKTLVQS 125 (272)
Q Consensus 117 ~FKk~LmqS 125 (272)
.-+-...+.
T Consensus 498 ~~~~~~~~~ 506 (607)
T KOG0240|consen 498 VNYDQKSEE 506 (607)
T ss_pred HhhhHHHHH
No 495
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=62.19 E-value=24 Score=38.77 Aligned_cols=86 Identities=24% Similarity=0.259 Sum_probs=0.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 024140 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQS---QIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (272)
Q Consensus 41 ~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~---r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (272)
.+.+..+|-.|...|-.+|++|+.++..+.. ..+.+..++.........+...|+.|++.|-+.+.+.++.-+||..
T Consensus 465 ~~~~q~~ls~el~el~k~l~~Ke~l~rr~~~~~~~~~~~~~~~e~~~~~le~e~~~le~E~~~l~~el~~~~~~~~kl~e 544 (913)
T KOG0244|consen 465 HPQKQGSLSGELSELEKRLAEKEPLTRRKAYEKAEKSKAKEQYESDSGTLEAEKSPLESERSRLRNELNVFNRLAAKLGE 544 (913)
T ss_pred chHHHhhhhHHHHHHHhhhccccHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHhcccccccHHHHHHHHhhhHHHHHhhh
Q ss_pred HHHHHHhhc
Q 024140 118 FRKTLVQSL 126 (272)
Q Consensus 118 FKk~LmqSL 126 (272)
=+++.+++|
T Consensus 545 er~qklk~l 553 (913)
T KOG0244|consen 545 ERVQKLKSL 553 (913)
T ss_pred HHHHHHHHH
No 496
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.04 E-value=62 Score=35.14 Aligned_cols=78 Identities=13% Similarity=0.244 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 024140 45 VSDLESEHSALRSQLAEKDSRI----AELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRK 120 (272)
Q Consensus 45 Vs~LE~E~~~LR~~L~EKd~~i----~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk 120 (272)
+++++.||+++..+|..=-+.- .+-++.+..++.++. ...+++..++..-.+=..+|+.+.||+.+|.==||
T Consensus 42 i~ki~~eir~~d~~l~~~Vr~q~N~g~~~~e~l~da~~ai~----eL~~~i~eiks~ae~Te~~V~eiTrdIKqLD~AKk 117 (793)
T KOG2180|consen 42 IQKIQGEIRRVDKNLLAVVRTQENSGTRGKENLADAQAAIE----ELFQKIQEIKSVAESTEAMVQEITRDIKQLDFAKK 117 (793)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHHH----HHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHh
Q ss_pred HHHhhc
Q 024140 121 TLVQSL 126 (272)
Q Consensus 121 ~LmqSL 126 (272)
+|-.|+
T Consensus 118 NLTtSi 123 (793)
T KOG2180|consen 118 NLTTSI 123 (793)
T ss_pred hHHHHH
No 497
>PF04888 SseC: Secretion system effector C (SseC) like family ; InterPro: IPR006972 SseC is a secreted protein that forms a complex together with SecB and SecD on the surface of Salmonella typhimurium. All these proteins are secreted by the type III secretion system []. Many mucosal pathogens use type III secretion systems for the injection of effector proteins into target cells. SecB, SseC and SecD are inserted into the target cell membrane. where they form a small pore or translocon [, ]. In addition to SseC, this family includes the bacterial secreted proteins PopB, PepB, YopB and EspD which are thought to be directly involved in pore formation, and type III secretion system translocon.; GO: 0009405 pathogenesis
Probab=62.04 E-value=1.3e+02 Score=27.79 Aligned_cols=78 Identities=15% Similarity=0.239 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 30 LDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVR 106 (272)
Q Consensus 30 LdlarkIts~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvK 106 (272)
..++..|++-++..-+..+..|+..++.++.+-+..+..|++-+..+-..+. ..+.+..+...+..+.+..+...|-
T Consensus 224 ~~~~~~v~~g~~~i~~A~~~~~~~~~~A~~~~~~a~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~Ia 303 (306)
T PF04888_consen 224 ASVANSVAQGGIQIASADLQKEAEKLQADQMELQAMMEQLQSIMDQAIKQFKKLMESFQQIMKSISQIIQQSGDTQAQIA 303 (306)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred H
Q 024140 107 K 107 (272)
Q Consensus 107 k 107 (272)
+
T Consensus 304 ~ 304 (306)
T PF04888_consen 304 S 304 (306)
T ss_pred h
No 498
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=62.03 E-value=90 Score=25.76 Aligned_cols=86 Identities=12% Similarity=0.230 Sum_probs=0.0
Q ss_pred HHHHHHHH---HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHH
Q 024140 30 LDVARKIT---SIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQ----------------IESIYSSLSDKLGQAQAD 90 (272)
Q Consensus 30 LdlarkIt---s~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r----------------~s~le~~l~~rL~~a~ee 90 (272)
|+++.+.- ..+|+.-...++..-..|.+-...++.-...+... +..|+.++. ...+.
T Consensus 11 l~l~~~~ee~a~~~la~a~~~~~~~~~~L~~L~~y~~~y~~~~~~~~~~g~~~~~l~~~~~fi~~L~~~I~----~q~~~ 86 (147)
T PRK05689 11 LDLAEKAEEQAALQLGQARQELQQAEQQLKMLEDYRLEYRQQLNDRGSAGMTSSWWINYQQFLQQLEKAIT----QQRQQ 86 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHH----HHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 024140 91 KERLSKENEALTNTVRKLQRDVSKLEVFR 119 (272)
Q Consensus 91 ~~kL~~E~~~La~TvKkL~rDvaKLE~FK 119 (272)
...+..+-...-..+..-.+++..||.||
T Consensus 87 v~~~~~~ve~~r~~~~~a~~~~k~lEkL~ 115 (147)
T PRK05689 87 LTQWTQKVDNARKYWQEKKQRLEALETLQ 115 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 499
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=62.02 E-value=1.6e+02 Score=31.07 Aligned_cols=86 Identities=20% Similarity=0.255 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 024140 30 LDVARKITSIAISTRV---SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTN 103 (272)
Q Consensus 30 LdlarkIts~A~atRV---s~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~ 103 (272)
+-.+.+|.+.-|.+++ +.+-.|+.+|-.+|.+++..|..+.-..+.+..-|+ ++=.+...|-..|+..+..+..
T Consensus 210 tN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~ 289 (596)
T KOG4360|consen 210 TNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQ 289 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhhHHHH
Q 024140 104 TVRKLQRDVSKL 115 (272)
Q Consensus 104 TvKkL~rDvaKL 115 (272)
..-.-.-++.+|
T Consensus 290 ~~~EaeeELk~l 301 (596)
T KOG4360|consen 290 MLHEAEEELKCL 301 (596)
T ss_pred HHHHHHHHHHhh
No 500
>PRK09737 EcoKI restriction-modification system protein HsdS; Provisional
Probab=62.00 E-value=18 Score=34.11 Aligned_cols=39 Identities=10% Similarity=0.330 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH---HHHHHHH-hhhHHHHHHHHHHHHhhc
Q 024140 88 QADKERLSKENEAL---TNTVRKL-QRDVSKLEVFRKTLVQSL 126 (272)
Q Consensus 88 ~ee~~kL~~E~~~L---a~TvKkL-~rDvaKLE~FKk~LmqSL 126 (272)
.+||.+..+.-+.| .+.+.+. ++.+++|+.+|+.|||.+
T Consensus 372 l~EQ~kI~~~l~~l~~~~d~i~~~~~~~l~~L~~lKqslLqk~ 414 (461)
T PRK09737 372 LEEQAEIVRRVEQLFAYADTIEKQVNNALARVNNLTQSILAKA 414 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!