Query 024140
Match_columns 272
No_of_seqs 79 out of 81
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 03:05:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024140.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024140hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hnw_A Uncharacterized protein 97.0 0.0088 3E-07 49.7 11.9 71 37-111 62-132 (138)
2 1c1g_A Tropomyosin; contractIl 97.0 0.017 5.8E-07 47.1 13.5 42 40-81 3-44 (284)
3 3u1c_A Tropomyosin alpha-1 cha 96.9 0.024 8.3E-07 44.6 12.4 77 40-116 20-99 (101)
4 2dfs_A Myosin-5A; myosin-V, in 96.7 0.017 5.9E-07 61.1 13.4 80 41-122 982-1061(1080)
5 3u59_A Tropomyosin beta chain; 96.5 0.043 1.5E-06 42.9 11.3 77 40-116 20-99 (101)
6 3a7p_A Autophagy protein 16; c 96.4 0.046 1.6E-06 46.7 12.0 75 37-115 69-144 (152)
7 3bas_A Myosin heavy chain, str 96.1 0.085 2.9E-06 40.5 10.9 70 44-113 15-87 (89)
8 2v4h_A NF-kappa-B essential mo 96.0 0.072 2.5E-06 43.4 10.8 64 49-116 44-110 (110)
9 2dfs_A Myosin-5A; myosin-V, in 95.9 0.0074 2.5E-07 63.9 5.5 71 45-115 923-996 (1080)
10 3o0z_A RHO-associated protein 95.7 0.084 2.9E-06 45.7 10.4 79 47-129 66-155 (168)
11 2fxo_A Myosin heavy chain, car 95.4 0.39 1.3E-05 38.8 12.9 69 46-114 16-94 (129)
12 3a7o_A Autophagy protein 16; c 95.3 0.12 4E-06 39.5 8.7 61 45-109 13-73 (75)
13 2b9c_A Striated-muscle alpha t 95.2 0.35 1.2E-05 40.5 12.5 76 38-113 47-125 (147)
14 3cvf_A Homer-3, homer protein 95.2 0.11 3.7E-06 40.0 8.4 56 46-105 2-57 (79)
15 2efr_A General control protein 95.0 0.61 2.1E-05 39.6 13.3 80 38-117 65-147 (155)
16 3oja_B Anopheles plasmodium-re 94.9 0.17 5.7E-06 48.1 10.7 41 89-129 544-584 (597)
17 2v71_A Nuclear distribution pr 94.9 0.46 1.6E-05 41.6 12.6 41 88-128 94-134 (189)
18 2fxo_A Myosin heavy chain, car 94.7 0.66 2.3E-05 37.5 12.3 76 41-116 39-124 (129)
19 3oja_B Anopheles plasmodium-re 94.4 0.34 1.2E-05 46.0 11.4 22 92-113 540-561 (597)
20 3m9b_A Proteasome-associated A 94.2 0.033 1.1E-06 50.9 4.0 69 42-115 23-94 (251)
21 3nmd_A CGMP dependent protein 94.1 0.18 6.2E-06 38.3 7.3 46 52-101 21-66 (72)
22 3i00_A HIP-I, huntingtin-inter 94.1 0.33 1.1E-05 39.6 9.4 53 48-100 20-79 (120)
23 1i84_S Smooth muscle myosin he 94.0 0.34 1.2E-05 51.2 11.7 75 44-118 858-942 (1184)
24 2v66_B Nuclear distribution pr 93.9 1.1 3.9E-05 36.2 12.1 61 39-99 6-73 (111)
25 3jsv_C NF-kappa-B essential mo 93.7 0.73 2.5E-05 36.6 10.2 66 48-117 21-89 (94)
26 3na7_A HP0958; flagellar bioge 93.6 1.3 4.5E-05 38.9 13.1 82 25-108 88-169 (256)
27 1ic2_A Tropomyosin alpha chain 93.6 1.4 4.7E-05 33.0 11.3 42 40-81 3-44 (81)
28 3hnw_A Uncharacterized protein 93.5 0.86 3E-05 37.7 11.0 54 64-117 75-131 (138)
29 3s4r_A Vimentin; alpha-helix, 93.5 1.5 5E-05 34.1 11.6 71 40-116 20-90 (93)
30 1l8d_A DNA double-strand break 93.5 1.5 5.3E-05 33.6 11.7 32 45-76 12-43 (112)
31 2q6q_A Spindle POLE BODY compo 93.4 0.72 2.5E-05 35.0 9.2 59 51-113 4-62 (74)
32 3tnu_B Keratin, type II cytosk 93.3 1.6 5.3E-05 35.1 12.0 27 40-66 40-66 (129)
33 3vkg_A Dynein heavy chain, cyt 93.0 0.56 1.9E-05 55.1 12.1 86 42-127 2013-2133(3245)
34 3na7_A HP0958; flagellar bioge 93.0 1.7 5.7E-05 38.3 12.7 28 99-126 146-173 (256)
35 3mq9_A Bone marrow stromal ant 92.8 3.8 0.00013 38.0 15.5 63 55-117 402-464 (471)
36 1i84_S Smooth muscle myosin he 92.7 0.85 2.9E-05 48.3 12.1 11 47-57 889-899 (1184)
37 4emc_A Monopolin complex subun 92.6 0.37 1.3E-05 42.4 7.9 37 45-81 22-58 (190)
38 2v71_A Nuclear distribution pr 92.6 1.9 6.5E-05 37.7 12.3 67 40-106 60-133 (189)
39 3tnu_A Keratin, type I cytoske 92.5 1.5 5E-05 35.4 10.8 21 40-60 42-62 (131)
40 4fm3_A Uncharacterized hypothe 91.7 2 6.8E-05 34.2 10.3 87 26-112 5-94 (98)
41 3nmd_A CGMP dependent protein 91.6 0.58 2E-05 35.5 6.9 37 45-81 21-57 (72)
42 1cii_A Colicin IA; bacteriocin 91.6 1.8 6.1E-05 43.2 12.1 64 50-113 349-415 (602)
43 2v66_B Nuclear distribution pr 91.6 3.6 0.00012 33.3 11.9 80 50-129 3-82 (111)
44 1gd2_E Transcription factor PA 91.4 0.4 1.4E-05 35.9 5.7 45 60-115 25-69 (70)
45 2xnx_M M protein, M1-BC1; cell 91.2 0.16 5.4E-06 43.2 3.7 37 86-122 98-134 (146)
46 3a7p_A Autophagy protein 16; c 91.1 2.9 0.0001 35.6 11.5 30 86-115 100-129 (152)
47 2akf_A Coronin-1A; coiled coil 90.8 0.29 1E-05 31.7 3.8 30 45-81 1-30 (32)
48 2eqb_B RAB guanine nucleotide 90.7 5.2 0.00018 31.8 11.8 71 43-113 19-93 (97)
49 3tnu_A Keratin, type I cytoske 90.7 4.5 0.00015 32.5 11.8 74 49-122 37-117 (131)
50 1x4t_A Hypothetical protein LO 90.5 0.31 1E-05 38.6 4.5 48 62-109 30-79 (92)
51 1gk4_A Vimentin; intermediate 90.5 4.4 0.00015 30.5 10.9 67 40-113 5-71 (84)
52 2jee_A YIIU; FTSZ, septum, coi 90.4 3.9 0.00013 31.6 10.6 63 47-109 10-75 (81)
53 3tnu_B Keratin, type II cytosk 90.4 5 0.00017 32.1 11.8 75 48-122 34-115 (129)
54 1l8d_A DNA double-strand break 90.3 3.9 0.00013 31.3 10.7 38 44-81 4-41 (112)
55 2e7s_A RAB guanine nucleotide 89.8 1.7 5.7E-05 36.4 8.7 46 25-71 5-53 (135)
56 3etw_A Adhesin A; antiparallel 89.3 7.9 0.00027 31.7 13.0 28 92-119 78-105 (119)
57 4etp_A Kinesin-like protein KA 88.9 0.57 1.9E-05 44.4 5.9 39 42-80 2-40 (403)
58 3cve_A Homer protein homolog 1 88.8 4.7 0.00016 30.4 9.7 46 55-104 5-50 (72)
59 1go4_E MAD1 (mitotic arrest de 88.7 2.1 7.3E-05 34.1 8.2 21 39-59 15-35 (100)
60 1m1j_B Fibrinogen beta chain; 88.7 6.7 0.00023 38.4 13.4 73 54-127 125-199 (464)
61 1x79_B RAB GTPase binding effe 88.7 2.1 7.2E-05 34.8 8.3 16 45-60 8-23 (112)
62 1ic2_A Tropomyosin alpha chain 88.7 3 0.0001 31.1 8.6 42 40-81 17-58 (81)
63 3ghg_A Fibrinogen alpha chain; 88.6 2 6.7E-05 43.1 9.6 60 68-131 114-194 (562)
64 2wt7_A Proto-oncogene protein 88.3 3.1 0.00011 29.8 8.2 34 85-118 26-59 (63)
65 3o0z_A RHO-associated protein 88.2 12 0.00041 32.3 13.2 81 45-125 43-126 (168)
66 3u1c_A Tropomyosin alpha-1 cha 87.7 8.3 0.00029 29.9 11.3 42 40-81 6-47 (101)
67 1t2k_D Cyclic-AMP-dependent tr 87.6 5.5 0.00019 28.1 9.1 32 86-117 26-57 (61)
68 3q8t_A Beclin-1; autophagy, AT 87.5 8.5 0.00029 29.8 12.4 77 40-116 8-94 (96)
69 3mq7_A Bone marrow stromal ant 87.3 3 0.0001 34.4 8.5 33 48-80 30-62 (121)
70 3ghg_A Fibrinogen alpha chain; 87.1 7 0.00024 39.2 12.5 64 55-118 90-153 (562)
71 2no2_A HIP-I, huntingtin-inter 86.9 10 0.00035 30.1 13.7 39 86-124 65-103 (107)
72 1x8y_A Lamin A/C; structural p 86.9 3.2 0.00011 31.5 7.9 66 41-113 8-73 (86)
73 3qh9_A Liprin-beta-2; coiled-c 86.7 1.3 4.4E-05 34.4 5.6 35 39-73 29-77 (81)
74 2xdj_A Uncharacterized protein 86.7 6 0.00021 30.3 9.4 9 42-50 5-13 (83)
75 3mq9_A Bone marrow stromal ant 86.5 15 0.0005 34.0 13.8 18 64-81 397-414 (471)
76 3s9g_A Protein hexim1; cyclin 86.5 3.3 0.00011 33.3 8.1 50 39-99 40-89 (104)
77 1x8y_A Lamin A/C; structural p 86.5 6.5 0.00022 29.8 9.5 66 50-122 3-68 (86)
78 2ocy_A RAB guanine nucleotide 86.5 14 0.00048 31.3 13.2 21 105-129 131-151 (154)
79 1hjb_A Ccaat/enhancer binding 85.9 3.6 0.00012 31.9 7.8 34 85-118 39-72 (87)
80 2xdj_A Uncharacterized protein 85.9 3.7 0.00013 31.4 7.9 44 37-80 21-64 (83)
81 1lwu_C Fibrinogen gamma chain; 85.8 2.3 7.7E-05 39.8 7.9 42 40-81 2-43 (323)
82 1ci6_A Transcription factor AT 85.7 2 6.9E-05 31.0 6.0 35 83-117 24-58 (63)
83 3ol1_A Vimentin; structural ge 85.7 12 0.00041 29.8 12.3 20 99-118 86-105 (119)
84 4etp_A Kinesin-like protein KA 85.4 2.2 7.4E-05 40.5 7.7 28 52-79 5-32 (403)
85 3mov_A Lamin-B1; LMNB1, B-type 85.3 5.9 0.0002 30.8 8.9 66 42-114 18-83 (95)
86 1jnm_A Proto-oncogene C-JUN; B 85.0 3 0.0001 29.7 6.6 35 83-117 23-57 (62)
87 4ghu_A TNF receptor-associated 84.8 1.2 4.1E-05 37.9 5.1 32 47-78 4-35 (198)
88 1ik9_A DNA repair protein XRCC 84.4 18 0.00063 31.6 12.7 90 24-130 117-206 (213)
89 3u59_A Tropomyosin beta chain; 83.8 13 0.00045 28.6 12.3 42 40-81 6-47 (101)
90 1d7m_A Cortexillin I; coiled-c 83.5 15 0.00052 29.2 12.7 42 34-75 16-57 (101)
91 3efg_A Protein SLYX homolog; x 83.2 5 0.00017 30.2 7.4 29 101-129 33-61 (78)
92 3bas_A Myosin heavy chain, str 83.0 13 0.00046 28.1 10.1 61 58-122 15-75 (89)
93 4dci_A Uncharacterized protein 82.9 8.4 0.00029 32.5 9.5 63 62-128 27-102 (150)
94 3he4_A Synzip6; heterodimeric 82.8 0.74 2.5E-05 32.8 2.5 28 87-114 29-56 (56)
95 1t2k_D Cyclic-AMP-dependent tr 82.4 5 0.00017 28.3 6.8 39 61-103 19-57 (61)
96 3oja_A Leucine-rich immune mol 82.3 12 0.00042 34.7 11.3 27 40-66 364-390 (487)
97 3htk_A Structural maintenance 81.9 8.2 0.00028 26.7 7.7 48 45-96 7-54 (60)
98 2lw1_A ABC transporter ATP-bin 81.7 9.2 0.00031 28.8 8.5 16 65-80 30-45 (89)
99 2jee_A YIIU; FTSZ, septum, coi 81.7 10 0.00035 29.2 8.7 31 86-116 31-61 (81)
100 1deq_A Fibrinogen (alpha chain 81.5 11 0.00038 36.3 10.8 17 39-55 63-79 (390)
101 1gu4_A CAAT/enhancer binding p 81.4 5.2 0.00018 30.3 6.9 33 86-118 40-72 (78)
102 4dyl_A Tyrosine-protein kinase 80.7 13 0.00046 34.5 11.0 90 36-130 302-393 (406)
103 3m91_A Proteasome-associated A 80.6 7 0.00024 27.6 6.9 34 64-101 16-49 (51)
104 2ocy_A RAB guanine nucleotide 80.6 12 0.0004 31.8 9.6 28 27-55 19-46 (154)
105 1yf2_A Type I restriction-modi 80.5 2.7 9.2E-05 36.9 5.8 39 88-126 378-416 (425)
106 3k29_A Putative uncharacterize 80.4 28 0.00095 30.1 16.3 60 22-81 2-65 (169)
107 3oja_A Leucine-rich immune mol 80.1 37 0.0013 31.4 13.8 24 38-61 369-392 (487)
108 4emc_A Monopolin complex subun 79.3 5.5 0.00019 35.1 7.3 58 54-115 10-67 (190)
109 3s4r_A Vimentin; alpha-helix, 78.6 20 0.00067 27.6 9.6 62 43-110 30-91 (93)
110 1m1j_A Fibrinogen alpha subuni 78.6 26 0.00088 34.7 12.4 44 38-81 60-117 (491)
111 1gd2_E Transcription factor PA 78.5 11 0.00037 28.1 7.7 39 42-80 28-66 (70)
112 2efr_A General control protein 78.2 18 0.00061 30.6 9.9 33 48-80 26-58 (155)
113 2no2_A HIP-I, huntingtin-inter 78.1 24 0.00081 28.0 13.8 70 51-120 16-85 (107)
114 2eqb_B RAB guanine nucleotide 77.8 12 0.0004 29.8 8.1 52 48-103 10-61 (97)
115 1yf2_A Type I restriction-modi 77.2 3.9 0.00013 35.8 5.8 40 88-127 168-207 (425)
116 2oqq_A Transcription factor HY 77.1 8.9 0.00031 26.4 6.3 20 60-79 13-32 (42)
117 3kqg_A Langerin, C-type lectin 76.9 3.9 0.00013 32.8 5.3 31 46-80 2-32 (182)
118 2gkw_A TNF receptor-associated 76.7 3.7 0.00013 34.3 5.3 33 46-78 3-35 (192)
119 4h22_A Leucine-rich repeat fli 76.7 17 0.00057 29.2 8.8 22 94-115 56-77 (103)
120 3m91_A Proteasome-associated A 76.4 10 0.00035 26.7 6.7 30 86-115 20-49 (51)
121 2oqq_A Transcription factor HY 76.4 4.6 0.00016 27.8 4.7 37 66-106 5-41 (42)
122 2p22_A Suppressor protein STP2 76.0 12 0.00042 32.2 8.4 34 86-119 60-93 (174)
123 3vkg_A Dynein heavy chain, cyt 75.8 26 0.00091 41.6 13.5 10 121-130 2077-2086(3245)
124 3u06_A Protein claret segregat 75.8 7.2 0.00025 37.1 7.7 32 46-77 6-37 (412)
125 3swy_A Cyclic nucleotide-gated 75.6 15 0.00051 25.5 7.2 43 68-117 2-44 (46)
126 4dk0_A Putative MACA; alpha-ha 75.5 11 0.00039 33.3 8.5 19 45-63 72-90 (369)
127 3fpp_A Macrolide-specific effl 75.5 18 0.00062 31.6 9.7 19 45-63 71-89 (341)
128 3u06_A Protein claret segregat 75.5 3.7 0.00013 39.1 5.6 47 86-132 14-60 (412)
129 4aj5_1 SKA3, spindle and kinet 75.4 30 0.001 27.7 11.4 73 46-118 16-96 (101)
130 4afl_A P29ING4, inhibitor of g 75.3 25 0.00085 26.8 12.1 76 41-116 9-100 (104)
131 3plt_A Sphingolipid long chain 75.2 47 0.0016 29.9 12.3 41 41-81 67-107 (234)
132 3qne_A Seryl-tRNA synthetase, 75.2 15 0.00051 36.0 9.8 61 67-128 50-110 (485)
133 4h22_A Leucine-rich repeat fli 75.1 24 0.00083 28.3 9.4 24 51-74 31-54 (103)
134 3m9b_A Proteasome-associated A 74.6 2.6 8.9E-05 38.4 4.1 36 82-117 54-89 (251)
135 2hy6_A General control protein 74.6 4.6 0.00016 26.7 4.1 28 83-110 2-29 (34)
136 3m48_A General control protein 74.5 3.8 0.00013 26.9 3.7 27 83-109 1-27 (33)
137 3swk_A Vimentin; cytoskeleton, 74.4 26 0.00089 26.6 9.1 15 100-114 67-81 (86)
138 3viq_B Mating-type switching p 73.9 8.3 0.00028 30.0 6.2 66 46-117 4-69 (85)
139 1ydx_A Type I restriction enzy 73.8 5.2 0.00018 35.7 5.8 41 87-127 353-393 (406)
140 1gk4_A Vimentin; intermediate 73.8 26 0.00087 26.2 10.3 53 70-122 14-66 (84)
141 2dq0_A Seryl-tRNA synthetase; 73.5 17 0.0006 34.8 9.7 68 61-129 42-109 (455)
142 3q8t_A Beclin-1; autophagy, AT 73.4 29 0.001 26.8 11.8 34 47-80 8-41 (96)
143 2fcw_A Alpha-2-macroglobulin r 73.4 35 0.0012 27.6 11.6 72 49-124 23-103 (109)
144 2wvr_A Geminin; DNA replicatio 73.1 22 0.00077 31.6 9.5 62 56-118 107-169 (209)
145 2xnx_M M protein, M1-BC1; cell 73.1 24 0.00083 29.9 9.4 30 88-117 79-108 (146)
146 2cly_A ATP synthase B chain, m 72.9 35 0.0012 30.2 10.8 50 48-97 82-137 (214)
147 2w83_C C-JUN-amino-terminal ki 72.8 8.3 0.00028 29.6 5.9 30 86-115 41-70 (77)
148 1wt6_A Myotonin-protein kinase 72.5 31 0.0011 26.6 9.2 55 46-108 17-71 (81)
149 1wlq_A Geminin; coiled-coil; 2 72.4 25 0.00086 27.2 8.6 51 57-108 31-81 (83)
150 3c3g_A Alpha/beta peptide with 72.0 4.7 0.00016 26.5 3.7 26 84-109 2-27 (33)
151 1jnm_A Proto-oncogene C-JUN; B 71.7 5.6 0.00019 28.2 4.5 20 61-80 19-38 (62)
152 1uo4_A General control protein 71.5 5 0.00017 26.5 3.8 27 83-109 2-28 (34)
153 3e98_A GAF domain of unknown f 71.4 15 0.00051 32.6 8.2 90 15-131 33-134 (252)
154 2lw1_A ABC transporter ATP-bin 71.0 21 0.00072 26.7 7.8 42 40-81 26-73 (89)
155 3oa7_A Head morphogenesis prot 71.0 11 0.00037 33.6 7.0 60 61-125 27-86 (206)
156 3m0d_C TNF receptor-associated 70.8 16 0.00056 26.3 6.9 45 33-78 18-62 (65)
157 3he5_A Synzip1; heterodimeric 70.6 17 0.00057 25.2 6.5 35 43-77 10-44 (49)
158 4b6x_A AVRRPS4, avirulence pro 70.5 19 0.00066 28.1 7.5 57 53-109 25-89 (90)
159 1m1j_C Fibrinogen gamma chain; 70.1 37 0.0013 32.6 11.1 32 40-71 35-66 (409)
160 2r2v_A GCN4 leucine zipper; co 70.1 5.8 0.0002 26.2 3.8 27 83-109 2-28 (34)
161 3m0a_A TNF receptor-associated 70.1 22 0.00076 25.1 7.4 14 48-61 3-16 (66)
162 1kd8_A GABH AIV, GCN4 acid bas 69.9 5.1 0.00017 26.8 3.6 29 84-112 3-31 (36)
163 2oxj_A Hybrid alpha/beta pepti 69.9 5.5 0.00019 26.3 3.7 27 83-109 2-28 (34)
164 3c3f_A Alpha/beta peptide with 69.9 5.6 0.00019 26.3 3.7 27 83-109 2-28 (34)
165 2qyw_A Vesicle transport throu 69.7 36 0.0012 26.3 9.8 20 97-116 79-98 (102)
166 1hjb_A Ccaat/enhancer binding 69.5 12 0.00041 28.9 6.2 17 41-57 41-57 (87)
167 3ibp_A Chromosome partition pr 69.1 31 0.001 32.3 9.9 22 93-114 80-101 (302)
168 1zhc_A Hypothetical protein HP 68.9 8.1 0.00028 28.8 5.0 64 53-117 6-72 (76)
169 3ghg_B Fibrinogen beta chain; 68.7 41 0.0014 33.0 11.2 88 39-126 91-193 (461)
170 3iv1_A Tumor susceptibility ge 68.5 37 0.0013 25.9 9.9 60 53-116 14-73 (78)
171 3swf_A CGMP-gated cation chann 68.3 22 0.00075 27.0 7.3 50 67-123 3-52 (74)
172 1gmj_A ATPase inhibitor; coile 68.3 40 0.0014 26.1 8.9 62 35-110 16-79 (84)
173 1zxa_A CGMP-dependent protein 68.2 6 0.00021 29.5 4.1 18 54-71 15-32 (67)
174 1m1j_C Fibrinogen gamma chain; 68.0 44 0.0015 32.0 11.2 10 244-253 333-342 (409)
175 3c9i_A Tail needle protein GP2 67.8 52 0.0018 29.7 10.7 97 19-115 28-145 (242)
176 1ydx_A Type I restriction enzy 67.8 8.6 0.00029 34.3 5.8 40 88-127 166-205 (406)
177 2xv5_A Lamin-A/C; structural p 67.5 29 0.00099 25.9 7.8 45 65-113 6-50 (74)
178 1fzc_C Fibrin; blood coagulati 67.0 5 0.00017 37.4 4.2 40 41-80 9-48 (319)
179 1ykh_B RNA polymerase II holoe 67.0 44 0.0015 27.1 9.5 78 27-112 52-129 (132)
180 1dh3_A Transcription factor CR 66.9 27 0.00091 24.5 7.1 33 62-112 20-52 (55)
181 1ztm_A Fusion glycoprotein; fu 66.8 15 0.00052 36.3 7.8 77 30-116 102-180 (490)
182 1dh3_A Transcription factor CR 66.7 20 0.00068 25.1 6.4 8 46-53 25-32 (55)
183 1yke_B RNA polymerase II holoe 66.5 42 0.0014 28.0 9.5 27 86-112 103-129 (151)
184 1wle_A Seryl-tRNA synthetase; 66.5 64 0.0022 31.5 12.2 75 54-129 74-156 (501)
185 2wq1_A General control protein 65.8 9.1 0.00031 25.1 4.1 26 84-109 2-27 (33)
186 3d5a_X RF1, peptide chain rele 65.6 39 0.0014 32.0 10.1 82 44-125 4-99 (354)
187 2odv_A Plectin 1, HD1; plakin 64.3 31 0.0011 30.4 8.7 90 30-119 98-195 (235)
188 2akf_A Coronin-1A; coiled coil 63.8 9.5 0.00033 24.6 3.8 25 93-117 3-27 (32)
189 3lss_A Seryl-tRNA synthetase; 63.6 76 0.0026 31.0 12.0 40 89-128 99-143 (484)
190 1m1j_B Fibrinogen beta chain; 63.6 1.1E+02 0.0038 29.8 13.2 41 41-81 98-138 (464)
191 2bni_A General control protein 63.5 9.1 0.00031 25.3 3.8 27 83-109 2-28 (34)
192 3he5_B Synzip2; heterodimeric 63.2 19 0.00066 25.2 5.6 29 89-117 17-45 (52)
193 1gqe_A Release factor 2, RF2; 62.4 96 0.0033 29.5 12.2 86 32-117 14-115 (365)
194 3mq7_A Bone marrow stromal ant 62.2 65 0.0022 26.5 12.5 34 66-103 73-106 (121)
195 3ghg_C Fibrinogen gamma chain; 62.1 24 0.0008 34.1 8.0 34 40-73 35-68 (411)
196 2q12_A DIP13 alpha, DCC-intera 62.1 66 0.0023 27.6 10.3 87 40-127 18-108 (265)
197 3ol1_A Vimentin; structural ge 62.0 40 0.0014 26.7 8.2 8 48-55 39-46 (119)
198 1kd8_B GABH BLL, GCN4 acid bas 61.9 16 0.00055 24.4 4.8 13 44-56 2-14 (36)
199 1zxa_A CGMP-dependent protein 61.8 14 0.00048 27.5 5.1 33 49-81 24-56 (67)
200 2ke4_A CDC42-interacting prote 61.6 39 0.0013 26.4 7.9 28 89-116 62-89 (98)
201 4h8s_A DCC-interacting protein 61.2 22 0.00075 32.5 7.4 21 41-61 42-62 (407)
202 1ca9_A TRAF2, protein (TNF rec 61.0 12 0.0004 31.0 5.0 33 45-77 5-37 (192)
203 2aze_A Transcription factor DP 60.7 30 0.001 29.4 7.6 35 43-77 5-39 (155)
204 1fxk_C Protein (prefoldin); ar 60.6 58 0.002 25.4 11.8 40 89-128 88-127 (133)
205 1gu4_A CAAT/enhancer binding p 60.5 12 0.00043 28.2 4.7 19 90-108 51-69 (78)
206 2yy0_A C-MYC-binding protein; 60.4 18 0.00063 25.4 5.2 28 50-77 19-46 (53)
207 4fla_A Regulation of nuclear P 60.2 65 0.0022 26.8 9.5 56 49-112 85-140 (152)
208 3mud_A DNA repair protein XRCC 60.1 43 0.0015 29.0 8.6 50 52-108 123-172 (175)
209 3bbp_D GRIP and coiled-coil do 59.9 6.5 0.00022 29.7 3.0 32 82-113 36-67 (71)
210 1ci6_A Transcription factor AT 59.5 36 0.0012 24.3 6.8 36 62-101 21-56 (63)
211 2i1j_A Moesin; FERM, coiled-co 59.3 5.3 0.00018 39.4 3.1 40 39-78 338-377 (575)
212 1deq_A Fibrinogen (alpha chain 59.3 69 0.0024 30.9 10.6 29 53-81 91-119 (390)
213 4e61_A Protein BIM1; EB1-like 59.3 68 0.0023 25.7 9.7 46 47-92 8-56 (106)
214 1kd8_B GABH BLL, GCN4 acid bas 59.0 15 0.00051 24.5 4.2 28 83-110 2-29 (36)
215 2ke4_A CDC42-interacting prote 58.9 38 0.0013 26.4 7.4 31 92-122 58-88 (98)
216 2dgc_A Protein (GCN4); basic d 58.9 14 0.0005 26.5 4.6 34 61-112 27-60 (63)
217 2e7s_A RAB guanine nucleotide 58.6 11 0.00036 31.6 4.3 86 39-128 35-124 (135)
218 3efg_A Protein SLYX homolog; x 58.6 24 0.00082 26.5 5.9 49 64-116 14-62 (78)
219 3mov_A Lamin-B1; LMNB1, B-type 58.5 62 0.0021 25.0 9.2 40 83-122 38-77 (95)
220 2q13_A DCC-interacting protein 58.4 42 0.0014 30.4 8.7 21 41-61 19-39 (385)
221 1nfn_A Apolipoprotein E3; lipi 58.4 47 0.0016 28.2 8.5 28 98-125 134-162 (191)
222 2wt7_A Proto-oncogene protein 58.2 46 0.0016 23.5 9.9 40 61-104 20-59 (63)
223 1lwu_C Fibrinogen gamma chain; 58.0 34 0.0011 31.9 8.1 10 244-253 253-262 (323)
224 2zxx_A Geminin; coiled-coil, c 57.8 55 0.0019 25.0 7.9 19 61-79 31-49 (79)
225 2w6a_A ARF GTPase-activating p 57.7 54 0.0019 24.2 8.1 34 84-117 22-55 (63)
226 3qh9_A Liprin-beta-2; coiled-c 57.6 61 0.0021 25.0 8.1 45 65-109 27-74 (81)
227 2wt7_B Transcription factor MA 57.5 30 0.001 27.0 6.5 36 64-103 48-83 (90)
228 1lq7_A Alpha3W; three helix bu 57.4 11 0.00039 27.5 3.8 12 44-55 3-14 (67)
229 1fxk_C Protein (prefoldin); ar 57.1 28 0.00096 27.3 6.5 37 41-77 93-129 (133)
230 2aze_B Transcription factor E2 56.7 17 0.00057 28.7 5.0 34 41-74 4-37 (106)
231 1gk6_A Vimentin; intermediate 56.6 28 0.00096 24.6 5.7 41 68-112 4-44 (59)
232 3ajw_A Flagellar FLIJ protein; 56.4 68 0.0023 24.9 11.6 36 86-121 85-120 (150)
233 1vcs_A Vesicle transport throu 56.3 29 0.00099 26.8 6.3 54 60-117 34-88 (102)
234 1x79_B RAB GTPase binding effe 56.0 79 0.0027 25.5 12.7 27 52-78 47-73 (112)
235 1uii_A Geminin; human, DNA rep 55.6 24 0.00084 27.3 5.6 33 85-117 42-74 (83)
236 2zqm_A Prefoldin beta subunit 55.6 64 0.0022 24.3 11.4 27 44-70 14-40 (117)
237 2pms_C Pneumococcal surface pr 55.4 17 0.00058 30.0 5.0 25 92-116 64-88 (125)
238 2ve7_A Kinetochore protein HEC 55.2 18 0.00062 33.1 5.7 46 36-81 150-202 (315)
239 1s1c_X RHO-associated, coiled- 55.1 28 0.00097 26.1 5.8 38 85-122 2-48 (71)
240 2olt_A Hypothetical protein; s 54.8 93 0.0032 25.9 10.7 45 18-62 7-72 (227)
241 3m0a_A TNF receptor-associated 54.4 53 0.0018 23.0 9.5 46 33-79 17-62 (66)
242 2w6b_A RHO guanine nucleotide 54.2 58 0.002 23.6 7.0 40 87-126 15-54 (56)
243 3c9i_A Tail needle protein GP2 54.2 1.2E+02 0.0042 27.2 14.7 61 52-112 86-149 (242)
244 1bg1_A Protein (transcription 54.2 46 0.0016 33.6 8.8 40 42-81 12-51 (596)
245 4b4t_K 26S protease regulatory 53.8 21 0.00071 34.0 6.1 35 83-117 50-84 (428)
246 1f5n_A Interferon-induced guan 53.8 41 0.0014 33.5 8.4 22 59-80 482-503 (592)
247 1kd8_A GABH AIV, GCN4 acid bas 53.6 27 0.00093 23.3 4.8 12 44-55 2-13 (36)
248 3rrk_A V-type ATPase 116 kDa s 53.6 63 0.0021 28.9 8.9 50 66-119 228-278 (357)
249 3m48_A General control protein 53.6 18 0.00062 23.7 3.9 13 44-56 1-13 (33)
250 2oto_A M protein; helical coil 53.5 89 0.003 25.4 12.7 38 40-77 26-63 (155)
251 1gqe_A Release factor 2, RF2; 53.5 60 0.0021 30.8 9.1 31 43-73 9-41 (365)
252 1ik9_A DNA repair protein XRCC 53.4 1.1E+02 0.0039 26.6 13.3 73 40-112 136-209 (213)
253 3a7o_A Autophagy protein 16; c 53.3 72 0.0025 24.2 9.0 43 37-79 19-61 (75)
254 3iox_A AGI/II, PA; alpha helix 52.6 1.9E+02 0.0064 28.8 14.9 53 45-97 29-81 (497)
255 2zdi_C Prefoldin subunit alpha 51.9 64 0.0022 25.9 8.0 42 87-128 96-137 (151)
256 3kpe_A Fusion glycoprotein F0; 51.8 61 0.0021 22.9 7.0 35 47-81 1-35 (51)
257 2d4y_A HAP1, flagellar HOOK-as 51.7 86 0.0029 29.5 9.9 70 38-108 73-148 (463)
258 2dq3_A Seryl-tRNA synthetase; 51.7 19 0.00067 34.0 5.5 63 66-129 46-108 (425)
259 1ez3_A Syntaxin-1A; three heli 51.7 77 0.0026 24.1 8.2 19 41-59 10-28 (127)
260 1gk6_A Vimentin; intermediate 51.6 60 0.0021 22.8 7.4 41 41-81 5-45 (59)
261 3ter_A Mammalian stromal inter 51.6 26 0.00091 29.3 5.6 29 82-110 59-87 (136)
262 4adz_A CSOR; transcription, co 51.5 91 0.0031 26.0 8.9 43 38-81 51-93 (136)
263 2xv5_A Lamin-A/C; structural p 51.3 73 0.0025 23.7 8.0 34 48-81 3-36 (74)
264 3cvf_A Homer-3, homer protein 51.2 79 0.0027 24.1 10.0 40 42-81 12-51 (79)
265 1fmh_A General control protein 51.2 20 0.0007 23.1 3.8 21 59-79 10-30 (33)
266 2qyw_A Vesicle transport throu 50.8 83 0.0028 24.2 9.6 78 39-122 11-94 (102)
267 1t3j_A Mitofusin 1; coiled coi 50.6 87 0.003 24.7 8.2 17 63-79 53-69 (96)
268 2yy0_A C-MYC-binding protein; 50.6 26 0.00089 24.6 4.7 27 89-115 19-45 (53)
269 1bf5_A Signal transducer and a 50.5 91 0.0031 31.4 10.3 33 40-72 13-45 (575)
270 1joc_A EEA1, early endosomal a 50.5 50 0.0017 26.3 7.0 28 39-66 7-34 (125)
271 2w6a_A ARF GTPase-activating p 50.0 74 0.0025 23.4 7.7 47 52-102 15-61 (63)
272 4dac_A Computationally designe 50.0 12 0.00041 23.4 2.5 18 100-117 5-22 (28)
273 2lf0_A Uncharacterized protein 49.7 35 0.0012 28.2 5.9 51 65-115 11-70 (123)
274 2dnx_A Syntaxin-12; snare, HAB 49.7 96 0.0033 24.6 13.2 51 30-80 13-74 (130)
275 1s94_A S-syntaxin; three helix 49.4 73 0.0025 26.0 8.1 20 40-59 40-59 (180)
276 2dq0_A Seryl-tRNA synthetase; 49.4 61 0.0021 31.1 8.6 31 99-129 72-102 (455)
277 1wlq_A Geminin; coiled-coil; 2 49.3 31 0.0011 26.7 5.3 32 86-117 35-66 (83)
278 3sjb_C Golgi to ER traffic pro 48.9 71 0.0024 25.1 7.4 19 41-59 21-39 (93)
279 1ytz_T Troponin T; muscle, THI 48.6 29 0.001 27.7 5.2 36 41-76 54-89 (107)
280 2yo3_A General control protein 48.5 66 0.0023 29.6 8.2 39 43-81 216-254 (268)
281 1y1u_A Signal transducer and a 48.4 1.2E+02 0.004 30.5 10.7 45 37-81 6-50 (585)
282 3k29_A Putative uncharacterize 48.3 1.3E+02 0.0046 25.9 13.0 73 52-124 80-157 (169)
283 3okg_A Restriction endonucleas 48.2 30 0.001 30.3 5.8 16 111-126 392-407 (412)
284 2zxx_A Geminin; coiled-coil, c 48.0 45 0.0015 25.5 6.0 24 86-109 31-54 (79)
285 2wq1_A General control protein 47.8 28 0.00097 22.8 4.1 12 44-55 1-12 (33)
286 1zme_C Proline utilization tra 47.7 8 0.00027 26.8 1.7 22 40-61 48-69 (70)
287 3he4_A Synzip6; heterodimeric 47.7 25 0.00085 25.0 4.2 27 91-117 26-52 (56)
288 1pl5_A Regulatory protein SIR4 47.6 23 0.00079 29.2 4.6 43 27-69 73-128 (142)
289 1wle_A Seryl-tRNA synthetase; 47.6 1.5E+02 0.0053 28.8 11.2 70 58-131 71-151 (501)
290 2zvf_A Alanyl-tRNA synthetase; 47.6 24 0.00083 28.4 4.8 30 86-115 29-58 (171)
291 2c5k_T Syntaxin TLG1, T-snare 47.5 84 0.0029 24.1 7.6 22 60-81 39-60 (95)
292 2dgc_A Protein (GCN4); basic d 47.4 42 0.0014 24.1 5.5 19 43-61 30-48 (63)
293 2b5u_A Colicin E3; high resolu 47.3 1.6E+02 0.0055 29.5 11.3 43 39-81 310-352 (551)
294 2zdi_C Prefoldin subunit alpha 47.2 23 0.00078 28.6 4.6 38 41-78 103-140 (151)
295 3mtu_E Head morphogenesis prot 47.2 93 0.0032 23.7 7.9 46 61-109 27-75 (77)
296 1nkp_B MAX protein, MYC proto- 47.1 55 0.0019 23.9 6.3 22 91-112 49-70 (83)
297 3htk_A Structural maintenance 47.1 66 0.0022 22.0 8.4 25 86-110 30-54 (60)
298 2vrs_A Sigma-C capsid protein; 46.8 24 0.00082 31.5 4.9 29 88-116 10-38 (211)
299 3fx0_A NF-kappa-B essential mo 46.7 11 0.00038 29.9 2.5 55 49-107 37-94 (96)
300 1nyh_A Regulatory protein SIR4 46.7 38 0.0013 28.5 5.9 43 27-69 97-152 (166)
301 1ses_A Seryl-tRNA synthetase; 46.6 72 0.0025 30.1 8.5 41 89-129 64-104 (421)
302 2xzr_A Immunoglobulin-binding 46.5 1.1E+02 0.0039 24.5 12.6 79 40-118 17-105 (114)
303 3fpp_A Macrolide-specific effl 46.5 1.1E+02 0.0036 26.7 9.1 12 50-61 69-80 (341)
304 1f5n_A Interferon-induced guan 46.5 1.2E+02 0.004 30.2 10.3 15 102-116 566-580 (592)
305 3gp4_A Transcriptional regulat 46.2 1.1E+02 0.0038 24.4 9.2 11 27-37 43-53 (142)
306 1zbt_A RF-1, peptide chain rel 46.2 32 0.0011 32.9 6.0 24 100-123 91-115 (371)
307 2ve7_A Kinetochore protein HEC 45.6 57 0.002 29.7 7.4 24 47-70 182-205 (315)
308 3g67_A Methyl-accepting chemot 45.3 1.5E+02 0.0052 25.6 12.6 29 86-114 50-78 (213)
309 3s9g_A Protein hexim1; cyclin 44.9 1.2E+02 0.0041 24.3 8.8 42 82-123 44-85 (104)
310 1t6f_A Geminin; coiled-coil, c 44.7 37 0.0013 22.7 4.4 21 52-72 9-29 (37)
311 2v0o_A FCHO2, FCH domain only 44.5 1.4E+02 0.0048 25.1 14.0 31 98-128 176-206 (276)
312 2oxj_A Hybrid alpha/beta pepti 44.5 41 0.0014 22.1 4.5 16 86-101 12-27 (34)
313 3etw_A Adhesin A; antiparallel 44.3 1.3E+02 0.0044 24.5 9.7 20 39-58 5-24 (119)
314 4fi5_A Nucleoprotein; structur 44.1 1.2E+02 0.004 24.7 8.2 24 66-89 24-50 (113)
315 2oto_A M protein; helical coil 43.8 1.3E+02 0.0044 24.4 11.8 16 41-56 34-49 (155)
316 2yko_A LINE-1 ORF1P; RNA-bindi 43.5 45 0.0015 30.0 6.2 10 115-124 71-80 (233)
317 3cve_A Homer protein homolog 1 43.5 1E+02 0.0034 23.1 10.0 40 42-81 6-45 (72)
318 2k48_A Nucleoprotein; viral pr 43.1 1.3E+02 0.0044 24.2 8.6 16 66-81 37-52 (107)
319 1yvl_A Signal transducer and a 43.0 1.9E+02 0.0064 29.7 11.3 39 41-79 135-173 (683)
320 2wuj_A Septum site-determining 43.0 21 0.00072 25.1 3.3 27 85-111 30-56 (57)
321 3qwe_A GMIP, GEM-interacting p 42.9 1.3E+02 0.0046 27.3 9.4 66 59-126 172-237 (279)
322 1no4_A Late, head morphogenesi 42.7 1.2E+02 0.0041 23.7 8.1 52 60-115 22-73 (97)
323 2p22_C Protein SRN2; endosome, 42.7 1.6E+02 0.0056 25.3 11.8 27 101-127 126-152 (192)
324 3hhm_B NISH2 P85alpha; PI3KCA, 42.6 75 0.0026 29.9 7.9 34 41-74 210-243 (373)
325 3t98_B Nucleoporin NUP58/NUP45 42.6 1.2E+02 0.004 23.5 8.1 72 41-112 10-81 (93)
326 3thf_A Protein shroom; coiled- 42.6 1.7E+02 0.006 25.6 13.3 57 65-122 71-127 (190)
327 3m0d_C TNF receptor-associated 42.5 90 0.0031 22.3 9.1 16 63-78 5-20 (65)
328 3ra3_B P2F; coiled coil domain 42.4 20 0.0007 22.4 2.7 22 53-74 3-24 (28)
329 1j1d_B Troponin T, TNT; THIN f 41.9 32 0.0011 27.4 4.5 36 41-76 54-89 (106)
330 3tq2_A KE1; parallel three hel 41.9 60 0.002 21.2 5.0 31 45-75 3-33 (36)
331 1nlw_A MAD protein, MAX dimeri 41.8 69 0.0024 23.8 6.1 23 90-112 55-77 (80)
332 1yke_B RNA polymerase II holoe 41.4 1.2E+02 0.004 25.2 8.1 18 52-69 59-76 (151)
333 1j1d_C Troponin I, TNI; THIN f 41.3 51 0.0017 27.3 5.8 35 42-76 71-105 (133)
334 1g5g_A Fusion protein; NDV, pa 41.2 29 0.001 34.3 5.0 76 30-115 96-173 (481)
335 1go4_E MAD1 (mitotic arrest de 41.2 1.3E+02 0.0045 23.7 7.9 31 51-81 13-43 (100)
336 1urq_A M-tomosyn isoform; tran 41.1 97 0.0033 22.2 8.1 39 41-79 9-47 (63)
337 1ykh_B RNA polymerase II holoe 41.0 1.4E+02 0.0048 24.1 8.6 69 46-117 53-124 (132)
338 1uo4_A General control protein 41.0 39 0.0013 22.3 4.0 12 44-55 2-13 (34)
339 3tul_A Cell invasion protein S 40.5 1.3E+02 0.0043 25.8 8.2 24 58-81 70-93 (158)
340 2dq3_A Seryl-tRNA synthetase; 40.5 54 0.0019 31.0 6.6 28 101-128 73-100 (425)
341 4e61_A Protein BIM1; EB1-like 40.4 69 0.0024 25.7 6.2 28 53-80 7-34 (106)
342 4ad8_A DNA repair protein RECN 40.4 68 0.0023 30.3 7.3 9 25-33 162-170 (517)
343 3cl3_D NF-kappa-B essential mo 39.9 63 0.0021 26.9 6.1 40 39-81 33-72 (130)
344 4gkw_A Spindle assembly abnorm 39.8 1.7E+02 0.0059 24.7 10.5 21 44-64 12-32 (167)
345 3a5t_A Transcription factor MA 39.6 2.1 7.1E-05 34.5 -2.8 21 10-30 4-24 (107)
346 2wvr_A Geminin; DNA replicatio 39.4 98 0.0033 27.6 7.6 36 86-125 126-161 (209)
347 1bf5_A Signal transducer and a 39.3 1.9E+02 0.0065 29.1 10.6 38 44-81 3-40 (575)
348 3ni0_A Bone marrow stromal ant 39.2 1.4E+02 0.0049 23.7 11.2 65 48-116 23-87 (99)
349 3l4q_C Phosphatidylinositol 3- 39.1 1.8E+02 0.0063 24.8 10.6 63 36-109 96-158 (170)
350 3mtu_A Tropomyosin alpha-1 cha 39.0 1E+02 0.0036 22.7 6.7 17 82-98 37-53 (75)
351 2j5u_A MREC protein; bacterial 38.9 16 0.00054 32.4 2.5 33 86-118 23-55 (255)
352 1t6f_A Geminin; coiled-coil, c 38.6 75 0.0026 21.2 5.1 12 86-97 4-15 (37)
353 3qne_A Seryl-tRNA synthetase, 38.6 2.4E+02 0.0082 27.5 11.0 31 99-129 74-104 (485)
354 2j69_A Bacterial dynamin-like 38.6 2.4E+02 0.0082 28.0 11.2 25 33-60 589-613 (695)
355 3swy_A Cyclic nucleotide-gated 38.4 70 0.0024 22.1 5.2 17 43-59 5-21 (46)
356 3lay_A Zinc resistance-associa 38.3 96 0.0033 26.4 7.2 9 55-63 90-98 (175)
357 2rr9_C Putative uncharacterize 37.5 80 0.0027 21.8 5.3 10 27-36 4-13 (46)
358 3ok8_A Brain-specific angiogen 37.3 2.2E+02 0.0075 25.2 11.9 34 30-66 54-87 (222)
359 2y7c_A Type-1 restriction enzy 37.2 1.4E+02 0.0048 26.4 8.5 22 14-36 360-385 (464)
360 3c3f_A Alpha/beta peptide with 36.9 53 0.0018 21.6 4.1 12 44-55 2-13 (34)
361 1s94_A S-syntaxin; three helix 36.7 1.7E+02 0.0057 23.8 8.3 20 50-69 43-62 (180)
362 3s84_A Apolipoprotein A-IV; fo 36.5 2.3E+02 0.0079 25.3 12.5 12 49-60 43-54 (273)
363 2p22_A Suppressor protein STP2 36.5 2E+02 0.0069 24.6 10.4 45 73-117 40-84 (174)
364 2ve7_C Kinetochore protein NUF 36.3 22 0.00074 31.7 3.0 30 84-113 150-179 (250)
365 4ani_A Protein GRPE; chaperone 36.3 2.2E+02 0.0076 24.9 10.4 13 116-128 143-155 (213)
366 3jsv_C NF-kappa-B essential mo 35.9 1.3E+02 0.0044 23.7 7.0 10 62-71 21-30 (94)
367 1wlo_A SUFE protein; structura 35.5 22 0.00075 29.0 2.7 46 11-61 87-132 (136)
368 3rrr_B Fusion glycoprotein F0; 35.3 2.1E+02 0.0071 27.5 9.7 62 44-115 10-71 (374)
369 2d4y_A HAP1, flagellar HOOK-as 35.2 1.1E+02 0.0039 28.6 8.0 59 55-116 65-123 (463)
370 4g63_A Cytosolic IMP-GMP speci 35.1 29 0.00099 33.9 3.9 10 46-55 325-334 (470)
371 2zuo_A MVP, major vault protei 35.0 4.3E+02 0.015 28.0 15.9 40 90-129 758-805 (861)
372 3ck6_A Putative membrane trans 34.9 1.7E+02 0.0059 24.5 8.4 18 64-81 171-188 (252)
373 1fzc_B Fibrin; blood coagulati 34.8 19 0.00064 33.5 2.4 10 244-253 268-277 (328)
374 1lj2_A NSP3-C, nonstructural R 34.8 1.8E+02 0.0062 23.5 9.5 70 58-127 7-102 (110)
375 1fxk_A Prefoldin; archaeal pro 34.6 1.4E+02 0.0047 22.1 11.8 27 44-70 9-35 (107)
376 1ni7_A ER75, hypothetical prot 34.6 7 0.00024 32.9 -0.5 51 11-65 100-150 (155)
377 1qvr_A CLPB protein; coiled co 34.5 1.7E+02 0.0057 29.5 9.4 6 201-206 596-601 (854)
378 1ez3_A Syntaxin-1A; three heli 34.4 1.5E+02 0.0051 22.4 10.9 24 50-73 12-35 (127)
379 3tso_C RAB11 family-interactin 34.2 66 0.0023 24.5 4.9 30 48-77 19-48 (75)
380 2iub_A CORA, divalent cation t 34.1 2.2E+02 0.0074 25.7 9.4 43 39-81 191-238 (363)
381 3ra3_A P1C; coiled coil domain 34.1 27 0.00092 21.8 2.3 24 93-116 4-27 (28)
382 2y7c_A Type-1 restriction enzy 34.0 69 0.0024 28.4 5.9 21 106-126 184-204 (464)
383 2qm4_A Non-homologous END-join 34.0 40 0.0014 30.0 4.3 39 32-71 133-171 (235)
384 2xus_A Breast cancer metastasi 33.6 66 0.0023 22.6 4.5 17 44-60 14-30 (49)
385 3t97_B Nuclear pore complex pr 33.4 96 0.0033 22.9 5.6 36 42-77 9-44 (65)
386 1zvu_A Topoisomerase IV subuni 33.3 4.2E+02 0.014 27.3 12.8 42 88-129 401-442 (716)
387 2p2u_A HOST-nuclease inhibitor 33.3 1.9E+02 0.0067 24.0 8.3 8 27-34 15-22 (171)
388 1avy_A Fibritin, gpwac M; bact 33.1 84 0.0029 23.8 5.3 33 43-75 8-40 (74)
389 3rkg_A Magnesium transporter M 33.1 1.6E+02 0.0055 26.5 8.2 29 103-131 171-199 (261)
390 1yvl_A Signal transducer and a 33.0 2.6E+02 0.0088 28.7 10.5 44 27-72 137-180 (683)
391 3a1q_C Ubiquitin interaction m 32.9 1.1E+02 0.0036 21.1 5.3 10 27-36 7-16 (45)
392 2a01_A Apolipoprotein A-I; fou 32.9 2.4E+02 0.0083 24.4 9.7 20 65-84 155-174 (243)
393 1nkp_B MAX protein, MYC proto- 32.7 62 0.0021 23.7 4.5 27 88-114 53-79 (83)
394 2inr_A DNA topoisomerase 4 sub 32.6 3.6E+02 0.012 26.7 11.2 42 88-129 453-494 (514)
395 2ic6_A Nucleocapsid protein; h 31.9 1.7E+02 0.0058 22.3 8.2 25 66-90 7-34 (78)
396 2p2u_A HOST-nuclease inhibitor 31.7 2.2E+02 0.0077 23.6 9.1 17 64-80 23-39 (171)
397 4b9q_A Chaperone protein DNAK; 31.7 3.1E+02 0.01 26.6 10.5 20 61-80 524-543 (605)
398 3viq_A SWI5-dependent recombin 31.1 62 0.0021 26.2 4.7 6 72-77 15-20 (122)
399 2gkw_A TNF receptor-associated 31.1 58 0.002 26.9 4.7 13 68-80 4-16 (192)
400 2ic9_A Nucleocapsid protein; h 31.0 2E+02 0.0067 22.8 8.2 24 66-89 7-33 (96)
401 3swk_A Vimentin; cytoskeleton, 30.7 1.7E+02 0.0058 21.9 9.4 17 98-114 44-60 (86)
402 4aj5_K Spindle and kinetochore 30.6 2.3E+02 0.0077 23.3 8.7 27 47-73 2-28 (123)
403 3r2p_A Apolipoprotein A-I; amp 30.4 2.1E+02 0.0072 23.6 8.0 71 45-123 73-143 (185)
404 1j1e_C Troponin I, TNI; THIN f 30.4 88 0.003 27.1 5.8 38 41-78 70-107 (180)
405 4ev6_A Magnesium transport pro 30.4 2.3E+02 0.0078 25.3 8.8 41 41-81 169-214 (339)
406 2wg5_A General control protein 30.4 49 0.0017 25.8 3.8 21 89-109 14-34 (109)
407 1wj7_A Hypothetical protein (R 30.3 35 0.0012 27.2 3.0 12 26-37 21-32 (104)
408 2d1l_A Metastasis suppressor p 29.9 3E+02 0.01 24.6 12.5 50 30-81 58-108 (253)
409 3cl3_D NF-kappa-B essential mo 29.9 21 0.0007 29.8 1.6 23 91-113 75-100 (130)
410 3k8w_A Flagellin homolog; flag 29.9 3.5E+02 0.012 25.3 10.9 86 26-115 8-106 (326)
411 3c3g_A Alpha/beta peptide with 29.7 83 0.0028 20.6 4.1 6 45-50 2-7 (33)
412 2ycu_A Non muscle myosin 2C, a 29.3 2.5E+02 0.0086 29.5 10.0 54 67-120 914-973 (995)
413 1joc_A EEA1, early endosomal a 29.2 2.1E+02 0.0072 22.5 9.3 15 63-77 17-31 (125)
414 2er8_A Regulatory protein Leu3 29.2 51 0.0017 22.8 3.4 17 64-80 49-65 (72)
415 1nkp_A C-MYC, MYC proto-oncoge 29.1 1.7E+02 0.0059 21.9 6.6 17 43-59 16-32 (88)
416 2wt7_B Transcription factor MA 29.0 79 0.0027 24.6 4.7 18 89-106 62-79 (90)
417 4dci_A Uncharacterized protein 28.9 2.6E+02 0.0087 23.4 10.4 28 91-118 79-106 (150)
418 3q4f_C DNA repair protein XRCC 28.8 76 0.0026 27.8 5.1 22 82-103 161-182 (186)
419 3nr7_A DNA-binding protein H-N 28.7 1.9E+02 0.0066 22.0 7.1 22 45-66 26-47 (86)
420 3hd7_A Vesicle-associated memb 28.7 1.9E+02 0.0064 21.8 9.3 68 44-123 6-73 (91)
421 3i00_A HIP-I, huntingtin-inter 28.7 2.3E+02 0.0078 22.8 10.2 22 60-81 11-32 (120)
422 1bg1_A Protein (transcription 28.6 1.2E+02 0.004 30.7 7.1 44 27-72 13-56 (596)
423 2zqm_A Prefoldin beta subunit 28.5 1.8E+02 0.0063 21.6 12.7 32 39-70 16-47 (117)
424 1lrz_A FEMA, factor essential 28.2 1.5E+02 0.0052 27.2 7.4 55 63-118 246-303 (426)
425 1lrz_A FEMA, factor essential 28.2 1.7E+02 0.0057 26.9 7.7 44 83-127 248-304 (426)
426 1gl2_A Endobrevin; membrane pr 28.1 1.6E+02 0.0054 20.8 7.2 17 43-59 9-25 (65)
427 2oa5_A Hypothetical protein BQ 28.0 1.2E+02 0.004 24.6 5.7 20 41-60 13-32 (110)
428 3lss_A Seryl-tRNA synthetase; 28.0 4E+02 0.014 25.9 10.6 34 97-130 100-138 (484)
429 1rtm_1 Mannose-binding protein 27.9 35 0.0012 26.3 2.6 19 41-59 2-20 (149)
430 2i1j_A Moesin; FERM, coiled-co 27.9 57 0.002 32.1 4.7 60 66-125 337-399 (575)
431 1fxk_A Prefoldin; archaeal pro 27.9 1.8E+02 0.0062 21.4 11.5 30 41-70 13-42 (107)
432 3fav_B ESAT-6, 6 kDa early sec 27.8 1.6E+02 0.0056 20.8 7.4 25 52-76 14-38 (94)
433 2yko_A LINE-1 ORF1P; RNA-bindi 27.8 98 0.0034 27.8 5.8 11 43-53 6-16 (233)
434 3viq_B Mating-type switching p 27.6 90 0.0031 24.1 4.8 19 42-60 7-25 (85)
435 1zhc_A Hypothetical protein HP 27.6 41 0.0014 24.9 2.8 28 50-77 17-44 (76)
436 1hx1_B BAG-1, BAG-family molec 27.5 92 0.0032 25.3 5.0 76 39-127 21-96 (114)
437 2dnx_A Syntaxin-12; snare, HAB 27.3 2.3E+02 0.0079 22.4 9.7 23 37-59 15-37 (130)
438 3frt_A Charged multivesicular 27.3 84 0.0029 27.6 5.2 20 104-123 55-74 (218)
439 1fio_A SSO1 protein; four heli 27.2 2.5E+02 0.0085 22.7 9.4 10 41-50 21-30 (196)
440 3onj_A T-snare VTI1; helix, HA 27.1 2E+02 0.007 21.7 10.3 52 61-116 31-86 (97)
441 4e8u_A Putative uncharacterize 26.9 56 0.0019 28.1 3.9 22 52-73 150-171 (172)
442 2nps_A VAMP-4, vesicle-associa 26.9 1.8E+02 0.0061 21.0 7.6 57 44-111 9-65 (74)
443 3f31_A Spectrin alpha chain, b 26.7 2.3E+02 0.0078 22.1 9.6 61 45-105 48-122 (149)
444 3teq_A Stromal interaction mol 26.6 2E+02 0.007 22.8 6.8 28 82-109 28-55 (101)
445 4egx_A Kinesin-like protein KI 26.5 1.8E+02 0.0062 24.4 7.0 19 53-71 8-26 (184)
446 2l3l_A Tubulin-specific chaper 26.5 1.6E+02 0.0056 23.1 6.3 61 40-100 39-102 (111)
447 3b5n_A Synaptobrevin homolog 1 26.5 1.6E+02 0.0056 20.4 9.0 30 82-111 30-59 (61)
448 3gpv_A Transcriptional regulat 26.5 2.5E+02 0.0084 22.4 8.0 11 27-37 57-67 (148)
449 4hpq_C ATG17, KLTH0D15642P; au 26.4 4.3E+02 0.015 25.2 11.6 59 53-115 311-369 (413)
450 3onj_A T-snare VTI1; helix, HA 26.4 2.1E+02 0.0072 21.6 11.9 21 56-76 40-60 (97)
451 1flk_A TNF receptor associated 26.3 60 0.0021 27.7 4.0 7 114-120 81-87 (228)
452 2l5g_B Putative uncharacterize 26.3 1.6E+02 0.0054 20.2 5.4 14 65-78 24-37 (42)
453 3zbh_A ESXA; unknown function, 26.2 1.7E+02 0.0059 20.5 10.2 8 67-74 33-40 (99)
454 4efa_E V-type proton ATPase su 26.2 3E+02 0.01 23.3 14.4 45 82-126 84-129 (233)
455 4hpq_C ATG17, KLTH0D15642P; au 26.0 4.4E+02 0.015 25.2 11.0 17 56-72 269-285 (413)
456 3rki_A Fusion glycoprotein F0; 25.7 3.5E+02 0.012 27.1 9.7 70 36-115 139-208 (528)
457 1tu3_F RAB GTPase binding effe 25.6 37 0.0013 26.0 2.3 31 90-120 6-36 (79)
458 4f61_I Stathmin-like domain R4 25.5 2.3E+02 0.0077 25.7 7.7 26 49-74 110-135 (240)
459 2xkj_E Topoisomerase IV; type 25.3 3.3E+02 0.011 28.4 9.8 43 89-131 696-738 (767)
460 4ani_A Protein GRPE; chaperone 25.1 2.4E+02 0.0083 24.7 7.7 30 52-81 61-90 (213)
461 3o6x_A Glutamine synthetase; t 24.7 4.3E+02 0.015 27.4 10.5 20 99-118 692-711 (729)
462 2fic_A Bridging integrator 1; 24.6 2.1E+02 0.0072 24.0 7.1 60 52-115 32-99 (251)
463 3kin_B Kinesin heavy chain; mo 24.6 1.1E+02 0.0039 24.0 5.1 48 34-81 58-113 (117)
464 4b4t_M 26S protease regulatory 24.6 68 0.0023 30.6 4.4 41 68-112 29-69 (434)
465 4gkw_A Spindle assembly abnorm 24.6 3.2E+02 0.011 23.1 10.2 8 109-116 73-80 (167)
466 1a93_B MAX protein, coiled coi 24.5 1.4E+02 0.0048 19.6 4.6 19 89-107 14-32 (34)
467 3w03_C DNA repair protein XRCC 24.4 1.6E+02 0.0054 25.5 6.3 25 83-107 153-177 (184)
468 4etp_B Spindle POLE BODY-assoc 24.3 2.5E+02 0.0087 26.5 8.1 49 58-110 11-59 (333)
469 2b9c_A Striated-muscle alpha t 24.2 3E+02 0.01 22.6 14.5 90 28-117 24-122 (147)
470 3a2a_A Voltage-gated hydrogen 24.2 2.1E+02 0.0071 20.8 6.2 10 49-58 10-19 (58)
471 3s84_A Apolipoprotein A-IV; fo 24.1 3.8E+02 0.013 23.8 13.4 15 67-81 113-127 (273)
472 1wt6_A Myotonin-protein kinase 23.7 2.5E+02 0.0086 21.5 7.9 38 74-111 17-60 (81)
473 2j69_A Bacterial dynamin-like 23.6 2.2E+02 0.0076 28.3 8.0 7 116-122 457-463 (695)
474 2vs0_A Virulence factor ESXA; 23.6 1.9E+02 0.0066 20.2 9.4 24 54-77 17-40 (97)
475 3rkg_A Magnesium transporter M 23.4 4E+02 0.014 23.8 10.6 36 25-60 121-158 (261)
476 3iox_A AGI/II, PA; alpha helix 23.3 5.6E+02 0.019 25.4 12.2 17 41-57 7-23 (497)
477 3mtu_A Tropomyosin alpha-1 cha 23.3 1.6E+02 0.0056 21.6 5.4 16 40-55 6-21 (75)
478 3haj_A Human pacsin2 F-BAR; pa 23.3 4.7E+02 0.016 24.6 11.8 11 114-124 240-250 (486)
479 2yfa_A MCPS, methyl-accepting 23.3 3.1E+02 0.011 22.4 10.3 70 43-117 178-248 (258)
480 4ew8_A Sensor protein DIVL; si 23.2 1.9E+02 0.0064 23.4 6.3 81 41-124 15-98 (268)
481 3g0m_A Cysteine desulfuration 23.2 21 0.00071 29.4 0.5 44 12-59 94-137 (141)
482 2bnx_A Diaphanous protein homo 23.1 11 0.00038 35.1 -1.3 43 21-63 280-333 (386)
483 1ses_A Seryl-tRNA synthetase; 23.1 3.7E+02 0.013 25.3 9.1 36 96-131 64-99 (421)
484 2de0_X Alpha-(1,6)-fucosyltran 23.0 5.1E+02 0.017 25.2 10.3 13 114-126 121-133 (526)
485 3ni0_A Bone marrow stromal ant 22.9 2.9E+02 0.0098 22.0 7.4 30 52-81 48-84 (99)
486 1a92_A Delta antigen; leucine 22.9 1.5E+02 0.0053 20.9 4.8 28 70-101 13-40 (50)
487 2w83_C C-JUN-amino-terminal ki 22.9 2.6E+02 0.0087 21.3 8.8 48 33-80 27-74 (77)
488 2l7b_A Apolipoprotein E, APO-E 22.8 2.1E+02 0.0071 26.1 7.1 9 115-123 182-190 (307)
489 2nrj_A HBL B protein; enteroto 22.6 3.9E+02 0.013 24.5 9.0 67 43-113 226-295 (346)
490 2xcs_B DNA gyrase subunit B, D 22.6 6.4E+02 0.022 25.9 12.6 42 88-129 636-677 (692)
491 3e98_A GAF domain of unknown f 22.5 3.5E+02 0.012 23.7 8.3 17 64-80 96-112 (252)
492 2r2v_A GCN4 leucine zipper; co 22.4 1.3E+02 0.0046 19.7 4.1 8 44-51 2-9 (34)
493 1j1d_B Troponin T, TNT; THIN f 22.4 2.9E+02 0.0099 21.8 9.0 55 61-115 22-82 (106)
494 3iyk_A VP5; icosahedral virus; 22.4 6E+02 0.02 25.4 12.4 86 39-124 93-178 (526)
495 1m1j_A Fibrinogen alpha subuni 22.3 4.2E+02 0.014 26.3 9.5 60 34-94 102-161 (491)
496 4i0x_B ESAT-6-like protein MAB 22.3 2.4E+02 0.0081 20.7 9.7 84 34-117 9-95 (103)
497 2vkl_A RV0948C/MT0975; helical 22.1 2E+02 0.0068 21.5 5.8 35 66-111 14-48 (90)
498 1lq7_A Alpha3W; three helix bu 22.0 1.6E+02 0.0056 21.4 5.0 57 66-122 4-67 (67)
499 2xhe_B Syntaxin1; exocytosis, 22.0 3.9E+02 0.013 23.2 11.2 78 38-115 50-150 (279)
500 4b4t_K 26S protease regulatory 22.0 1.8E+02 0.006 27.6 6.7 67 56-122 17-89 (428)
No 1
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=97.04 E-value=0.0088 Score=49.73 Aligned_cols=71 Identities=14% Similarity=0.207 Sum_probs=58.6
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024140 37 TSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRD 111 (272)
Q Consensus 37 ts~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rD 111 (272)
++.=|+.-.-++..++..|++++.+++..|++|...+..++..+ ..+.+++.+|.+|++.|...+++|...
T Consensus 62 aALNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~----e~~~~e~~~l~~~~~~l~~~~~~le~~ 132 (138)
T 3hnw_A 62 MYLNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKA----ESSAKEIKELKSEINKYQKNIVKLETE 132 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777778888999999999999999999998888777555 488888888888888888888888643
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=97.03 E-value=0.017 Score=47.09 Aligned_cols=42 Identities=12% Similarity=0.173 Sum_probs=22.6
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 40 A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~ 81 (272)
+|..+|..|+.++..+..++.+-...+..++.++..++..+.
T Consensus 3 ~~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~ 44 (284)
T 1c1g_A 3 AIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELV 44 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555555555554444443
No 3
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=96.86 E-value=0.024 Score=44.55 Aligned_cols=77 Identities=16% Similarity=0.212 Sum_probs=63.1
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 024140 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (272)
Q Consensus 40 A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE 116 (272)
.+.-|+..+|.++..+.+....++..|..|+.|+..+|..|- .+|..+.+....-.+-...-...|..|||-|.-||
T Consensus 20 ~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~RriqllE 99 (101)
T 3u1c_A 20 NALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456688888999999999999999999999999999999987 66776666666555556666678999999888776
No 4
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.67 E-value=0.017 Score=61.07 Aligned_cols=80 Identities=18% Similarity=0.318 Sum_probs=38.4
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 024140 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRK 120 (272)
Q Consensus 41 ~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk 120 (272)
...+|..||.|+..|++++.+-..+..+|++++..+...|+.++....+++.+|.++.+.|...+.+.+.+.+ |.+|.
T Consensus 982 ~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~~~~~--~~~~~ 1059 (1080)
T 2dfs_A 982 ATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEIT--ETMEK 1059 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 3345555555555555555555555555555555555544444444444444444444444444444433222 23555
Q ss_pred HH
Q 024140 121 TL 122 (272)
Q Consensus 121 ~L 122 (272)
.+
T Consensus 1060 ~~ 1061 (1080)
T 2dfs_A 1060 KL 1061 (1080)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 5
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=96.46 E-value=0.043 Score=42.86 Aligned_cols=77 Identities=16% Similarity=0.238 Sum_probs=62.2
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 024140 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (272)
Q Consensus 40 A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE 116 (272)
.+.-|+..+|.++..+.+....++..|..|+.|+..++..+- .+|..+.+....-.+....-...|..|||-+.-||
T Consensus 20 ~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriqllE 99 (101)
T 3u59_A 20 NAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 455678888899999999999999999999999999999886 66776666666666666666778999999887664
No 6
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=96.41 E-value=0.046 Score=46.70 Aligned_cols=75 Identities=19% Similarity=0.215 Sum_probs=56.8
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhHHHH
Q 024140 37 TSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNT-VRKLQRDVSKL 115 (272)
Q Consensus 37 ts~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~T-vKkL~rDvaKL 115 (272)
+-..+..-...|+.+|..|...+.+|...+..|++-+..|..++. .+.++..+|++||+.|... +++-+++-.+|
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n----~lE~kl~kLq~EN~~LV~RWM~rk~qEAe~M 144 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENN----VLQQKLSDLKKEHSQLVARWLKKTEKETEAM 144 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666777777777778888888888888888888877765 8899999999999988765 55666666554
No 7
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=96.06 E-value=0.085 Score=40.53 Aligned_cols=70 Identities=20% Similarity=0.269 Sum_probs=60.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 024140 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (272)
Q Consensus 44 RVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDva 113 (272)
-+..++.|+..|+..+..-.....+|+.++..|..+.. ..|..+.+.+.+|.+.+..|...++.|+..|.
T Consensus 15 Em~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl~ 87 (89)
T 3bas_A 15 EMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLVG 87 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45578999999999999888899999999988887765 44889999999999999999999999987653
No 8
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=96.04 E-value=0.072 Score=43.41 Aligned_cols=64 Identities=19% Similarity=0.345 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 024140 49 ESEHSALRSQLAEKDS---RIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (272)
Q Consensus 49 E~E~~~LR~~L~EKd~---~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE 116 (272)
..+|..|++.++.++. .|.-|+.++.-....+. .=+.+-++|+.|+..|...+..|++++.+|+
T Consensus 44 q~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~----aERadREkl~~eKe~L~~ql~~Lq~q~~~l~ 110 (110)
T 2v4h_A 44 QELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQ----AERHAREKLVEKKEYLQEQLEQLQREFNKLK 110 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----cchhhHHHHHhHHHHHHHHHHHHHHHHHhcC
Confidence 3566777777766666 55555555555544443 5556678999999999999999999998874
No 9
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.88 E-value=0.0074 Score=63.85 Aligned_cols=71 Identities=23% Similarity=0.299 Sum_probs=19.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 024140 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (272)
Q Consensus 45 Vs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (272)
..+||.++..|..+|.++.+...+|++++..++..+. .+|+..+++.+++.+|+..+.+.|+.|..++++|
T Consensus 923 ~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l 996 (1080)
T 2dfs_A 923 HIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKL 996 (1080)
T ss_dssp ----------------------------CHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777777766666666666554444443 3444444444444444444444444444444433
No 10
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=95.68 E-value=0.084 Score=45.67 Aligned_cols=79 Identities=20% Similarity=0.397 Sum_probs=45.7
Q ss_pred hhHHHHHHHHHHHH-HH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH---
Q 024140 47 DLESEHSALRSQLA-EK------DSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE--- 116 (272)
Q Consensus 47 ~LE~E~~~LR~~L~-EK------d~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE--- 116 (272)
.||.|+..|..+|. || .+.|.+|+.|+..|+.+|. ...+...++..||..|..-|-.|.+.-+-||
T Consensus 66 ~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~----~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~ 141 (168)
T 3o0z_A 66 QTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVK----HLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDL 141 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 45566666666666 55 3566888888888888876 3334444445555555555555555555554
Q ss_pred HHH-HHHHhhcccc
Q 024140 117 VFR-KTLVQSLKDD 129 (272)
Q Consensus 117 ~FK-k~LmqSLq~d 129 (272)
+|| |+|=++++-+
T Consensus 142 ~~eLKalQ~~~eqE 155 (168)
T 3o0z_A 142 NYKLKSLQQRLEQE 155 (168)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 344 4444444443
No 11
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=95.41 E-value=0.39 Score=38.84 Aligned_cols=69 Identities=20% Similarity=0.400 Sum_probs=31.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 024140 46 SDLESEHSALRSQLAEKDSRIAELQSQIES-------IYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSK 114 (272)
Q Consensus 46 s~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~-------le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaK 114 (272)
..++.++..|+.+|..-.....+|+.+... |..+|+ +.+..+.+.+.+|...+..|...++-|+.++..
T Consensus 16 ~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rlee 94 (129)
T 2fxo_A 16 ASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLED 94 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555554333333333333222 222222 444555555555555555555555555544443
No 12
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=95.27 E-value=0.12 Score=39.49 Aligned_cols=61 Identities=18% Similarity=0.192 Sum_probs=43.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024140 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQ 109 (272)
Q Consensus 45 Vs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (272)
-+.|+.-+..||..|.+||.+|..|++.+.---. -.....+|..-|.=||+-|.+.+.+|.
T Consensus 13 ~~~~~~~l~~Lr~eL~~Ke~eI~~L~e~i~lk~k----d~ErLNDEiislNIENNlL~~rl~~l~ 73 (75)
T 3a7o_A 13 DDALLNTLAILQKELKSKEQEIRRLKEVIALKNK----NTERLNDELISGTIENNVLQQKLSDLK 73 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----cHHHhhHHHHHhHHHHHHHHHHHHHHh
Confidence 3456667899999999999999999977652222 223567788888888888877766654
No 13
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=95.23 E-value=0.35 Score=40.49 Aligned_cols=76 Identities=16% Similarity=0.223 Sum_probs=69.5
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 024140 38 SIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (272)
Q Consensus 38 s~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDva 113 (272)
+++.--|+..||.++...+....+.|+...+...|+.-++..|. .|+..+...+..|..|...+.+.+|.|...-.
T Consensus 47 ~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~ee 125 (147)
T 2b9c_A 47 AQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKVE 125 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHH
Confidence 66778899999999999999999999999999999999999998 89999999999999999999999999875543
No 14
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=95.19 E-value=0.11 Score=40.01 Aligned_cols=56 Identities=25% Similarity=0.395 Sum_probs=40.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTV 105 (272)
Q Consensus 46 s~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~Tv 105 (272)
..||+|...+-++|.+-.....+|++||..|+..|. .+..+...+..|-..|..+.
T Consensus 2 ~~l~~e~e~~~~klq~~E~rN~~Le~~v~~le~~Le----~s~~~q~~~~~Elk~l~e~L 57 (79)
T 3cvf_A 2 SHMAAEREETQQKVQDLETRNAELEHQLRAMERSLE----EARAERERARAEVGRAAQLL 57 (79)
T ss_dssp --------CTTHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 368899999999999999999999999999998877 77777777777766666553
No 15
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=94.97 E-value=0.61 Score=39.64 Aligned_cols=80 Identities=21% Similarity=0.260 Sum_probs=60.2
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 024140 38 SIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSK 114 (272)
Q Consensus 38 s~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaK 114 (272)
...+..|...+|.+|..|..+|.|-+.....-+..|..|+..+. ++|......+..+..|-+..-+.+..+.-++-.
T Consensus 65 eekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~ 144 (155)
T 2efr_A 65 AEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYH 144 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHH
Confidence 55667899999999999999999998888888888888887776 667777777777777777655555555555444
Q ss_pred HHH
Q 024140 115 LEV 117 (272)
Q Consensus 115 LE~ 117 (272)
|++
T Consensus 145 ~~~ 147 (155)
T 2efr_A 145 LEN 147 (155)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 16
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=94.88 E-value=0.17 Score=48.11 Aligned_cols=41 Identities=15% Similarity=0.101 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 024140 89 ADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (272)
Q Consensus 89 ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq~d 129 (272)
++.++|.+.-+.-..+++.|.+++++++.=.|+|++-+++.
T Consensus 544 ~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~ 584 (597)
T 3oja_B 544 QENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRN 584 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred hhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 44444444444444577777777777766667777766654
No 17
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=94.86 E-value=0.46 Score=41.63 Aligned_cols=41 Identities=27% Similarity=0.368 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 024140 88 QADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (272)
Q Consensus 88 ~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq~ 128 (272)
..+..+|.+++..|...+++|...-.-||+=.|.+.-||.|
T Consensus 94 q~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD 134 (189)
T 2v71_A 94 EDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLED 134 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHH
Confidence 34444555555555555555555555566666666655544
No 18
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=94.66 E-value=0.66 Score=37.46 Aligned_cols=76 Identities=18% Similarity=0.353 Sum_probs=46.5
Q ss_pred HHHhhhhhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024140 41 ISTRVSDLESEHSALRSQLA-------EKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQR 110 (272)
Q Consensus 41 ~atRVs~LE~E~~~LR~~L~-------EKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~r 110 (272)
+-.+...|+.|...|..+|. +++.....|..+-..|+..|. .||..-.+.+..|..++..|...+..|..
T Consensus 39 le~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~ 118 (129)
T 2fxo_A 39 LEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKR 118 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777777666655 344444444444455555555 66666666667777777777777777766
Q ss_pred hHHHHH
Q 024140 111 DVSKLE 116 (272)
Q Consensus 111 DvaKLE 116 (272)
|+.-||
T Consensus 119 ~led~e 124 (129)
T 2fxo_A 119 DIDDLE 124 (129)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666655
No 19
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=94.35 E-value=0.34 Score=45.97 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhHH
Q 024140 92 ERLSKENEALTNTVRKLQRDVS 113 (272)
Q Consensus 92 ~kL~~E~~~La~TvKkL~rDva 113 (272)
.+|.+|+..|...+++-.+.+.
T Consensus 540 ~~~~~~~~~le~~~~~~~~~~~ 561 (597)
T 3oja_B 540 EDLEQENIALEKQLDNKRAKQA 561 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHhhhHHHHHHHhhhhhHHH
Confidence 3333455555544444444443
No 20
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=94.23 E-value=0.033 Score=50.89 Aligned_cols=69 Identities=17% Similarity=0.303 Sum_probs=26.9
Q ss_pred HHhhhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 024140 42 STRVSDLESEHSALRSQLAEK---DSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (272)
Q Consensus 42 atRVs~LE~E~~~LR~~L~EK---d~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (272)
+..|..|+.|+..||.+|.+- .+.... ++|+..|+.++. .....|.+|..+...|...+.+|..+|.+|
T Consensus 23 ~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~-~~~l~eL~~ql~----~L~arNe~L~~~Lk~ar~El~~LkeElerL 94 (251)
T 3m9b_A 23 AAELEQLRREAAVLREQLENAVGSHAPTRS-ARDIHQLEARID----SLAARNSKLMETLKEARQQLLALREEVDRL 94 (251)
T ss_dssp -----------------------------C-CHHHHHHHHHHH----HHTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhhhcccCcccchh-hhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566677888888888888654 444333 455555555544 555566667777777777777777776665
No 21
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=94.13 E-value=0.18 Score=38.27 Aligned_cols=46 Identities=20% Similarity=0.184 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 52 HSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEAL 101 (272)
Q Consensus 52 ~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~L 101 (272)
+..|+..|.+|++.|...++++..||..|+ +.++++.+|+.|-|.+
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~----ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELD----QKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHh
Confidence 556666666666666666666666665554 5555555555554443
No 22
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=94.12 E-value=0.33 Score=39.61 Aligned_cols=53 Identities=26% Similarity=0.293 Sum_probs=34.9
Q ss_pred hHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 024140 48 LESEHSALRSQ----LAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEA 100 (272)
Q Consensus 48 LE~E~~~LR~~----L~EKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~ 100 (272)
|-.|+.+||.. ..|-.+.|.+|+.||+.|+.+|. .-...|..+|..|..|...
T Consensus 20 Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~ 79 (120)
T 3i00_A 20 LYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDE 79 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444 45889999999999999999998 2233445555555555444
No 23
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=94.04 E-value=0.34 Score=51.23 Aligned_cols=75 Identities=11% Similarity=0.235 Sum_probs=45.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 024140 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS----------DKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (272)
Q Consensus 44 RVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~----------~rL~~a~ee~~kL~~E~~~La~TvKkL~rDva 113 (272)
++..|+.++..|+.+|..-+..+.+|++++..|+.++. ..+..+.++..+|..++..|...++.|..++.
T Consensus 858 El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~ele 937 (1184)
T 1i84_S 858 EMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIE 937 (1184)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666777777666666666666666666555444 34444555666666666666666666666655
Q ss_pred HHHHH
Q 024140 114 KLEVF 118 (272)
Q Consensus 114 KLE~F 118 (272)
.++.-
T Consensus 938 e~ee~ 942 (1184)
T 1i84_S 938 EEEER 942 (1184)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 54443
No 24
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=93.95 E-value=1.1 Score=36.24 Aligned_cols=61 Identities=11% Similarity=0.213 Sum_probs=39.0
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 024140 39 IAISTRVSDLESEHSALRSQLAEKD----SRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENE 99 (272)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~L~EKd----~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~ 99 (272)
..+..++..|+.|+..+|.++..-. ..|..||+.+..|-..-. .+|+...+.|..|.....
T Consensus 6 rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R 73 (111)
T 2v66_B 6 RDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKR 73 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHH
Confidence 3577888999999999998887543 345666666665554433 555555555555555443
No 25
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=93.66 E-value=0.73 Score=36.58 Aligned_cols=66 Identities=20% Similarity=0.351 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 024140 48 LESEHSALRSQLAEKD---SRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (272)
Q Consensus 48 LE~E~~~LR~~L~EKd---~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (272)
...+|..|++.++.+. ..|.-|+.++.-....+. .=+.+-++|..|+..|...+..|.+++.+|..
T Consensus 21 kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~----aERadREkl~~eKe~L~~ql~~lq~q~~~L~~ 89 (94)
T 3jsv_C 21 KQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQ----AERHAREKLVEKKEYLQEQLEQLQREFNKLKV 89 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHTTSHHHHHHHHHHHTTC----
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888777666 666777777777766665 55667789999999999999999999999854
No 26
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=93.65 E-value=1.3 Score=38.95 Aligned_cols=82 Identities=9% Similarity=0.127 Sum_probs=51.6
Q ss_pred CchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 25 DPFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNT 104 (272)
Q Consensus 25 DP~EQLdlarkIts~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~T 104 (272)
++-|-=+|-..|. .+..|+..||.++..+..++.++...+.+++.++..++..|...-....+....+.+|...|...
T Consensus 88 ~~kE~~aL~kEie--~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~ 165 (256)
T 3na7_A 88 SERELRSLNIEED--IAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKK 165 (256)
T ss_dssp SSSHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445556666 45578888888888888888888888888888888888777633333333444444444444433
Q ss_pred HHHH
Q 024140 105 VRKL 108 (272)
Q Consensus 105 vKkL 108 (272)
-..|
T Consensus 166 r~~l 169 (256)
T 3na7_A 166 KEDL 169 (256)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
No 27
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=93.62 E-value=1.4 Score=32.99 Aligned_cols=42 Identities=10% Similarity=0.158 Sum_probs=22.8
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 40 A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~ 81 (272)
||..|+..|+.|......++.+-...+.+.+.+...++..+.
T Consensus 3 ~ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~ 44 (81)
T 1ic2_A 3 AIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELV 44 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 456666666666655555555555555555544444444443
No 28
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=93.51 E-value=0.86 Score=37.69 Aligned_cols=54 Identities=28% Similarity=0.311 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 024140 64 SRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (272)
Q Consensus 64 ~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (272)
+.+..|+.++..++.++. ..|..+..++..+.+|+..|...+..|.+.+.+||+
T Consensus 75 ~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~ 131 (138)
T 3hnw_A 75 KMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLET 131 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444 555688899999999999999999999999999985
No 29
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=93.47 E-value=1.5 Score=34.05 Aligned_cols=71 Identities=13% Similarity=0.241 Sum_probs=46.3
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 024140 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (272)
Q Consensus 40 A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE 116 (272)
.|--||-.||.+-..|..++.+-.. ...+.+...+..-+..+......+..||..|...+..|..++..|+
T Consensus 20 syIdKVR~LEqqN~~Le~~i~~l~~------~~~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k 90 (93)
T 3s4r_A 20 NLIDKVRFLEQQNKILLAELEQLKG------QGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLR 90 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh------ccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999998888766643221 1223333333345556667777777888888888888777776553
No 30
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=93.46 E-value=1.5 Score=33.59 Aligned_cols=32 Identities=22% Similarity=0.514 Sum_probs=14.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESI 76 (272)
Q Consensus 45 Vs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~l 76 (272)
...++.++..|+....+-...|.+|++.+..+
T Consensus 12 ~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l 43 (112)
T 1l8d_A 12 KTTIEEERNEITQRIGELKNKIGDLKTAIEEL 43 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444444444444444
No 31
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=93.35 E-value=0.72 Score=35.04 Aligned_cols=59 Identities=25% Similarity=0.352 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 024140 51 EHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (272)
Q Consensus 51 E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDva 113 (272)
+-..|-.+|.+|+++|..|..=+.+|- +||-.-.+-+.||+.+...+..-+..|++|+.
T Consensus 4 QNKeL~~kl~~Kq~EI~rLnvlvgslR----~KLiKYtelnKKLe~~~~~~q~s~~~l~k~~~ 62 (74)
T 2q6q_A 4 QNKELNFKLREKQNEIFELKKIAETLR----SKLEKYVDITKKLEDQNLNLQIKISDLEKKLS 62 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcc
Confidence 346788999999999988875555444 66668899999999999999999988888764
No 32
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=93.34 E-value=1.6 Score=35.11 Aligned_cols=27 Identities=19% Similarity=0.295 Sum_probs=14.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 024140 40 AISTRVSDLESEHSALRSQLAEKDSRI 66 (272)
Q Consensus 40 A~atRVs~LE~E~~~LR~~L~EKd~~i 66 (272)
-+...|+.|+.|+..|+.+-+-=...|
T Consensus 40 elrr~iq~L~~el~~l~~~~~~LE~~l 66 (129)
T 3tnu_B 40 EMNRMIQRLRAEIDNVKKQCANLQNAI 66 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 344556666666666655444333333
No 33
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=93.01 E-value=0.56 Score=55.07 Aligned_cols=86 Identities=19% Similarity=0.281 Sum_probs=60.0
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHH
Q 024140 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-----------------DKLGQAQADKERLSKENEALTNT 104 (272)
Q Consensus 42 atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~-----------------~rL~~a~ee~~kL~~E~~~La~T 104 (272)
..++.++|.+....+++|.++.+.+++|++++..|+.++. .||..|..=...|..|+..=..+
T Consensus 2013 r~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~ 2092 (3245)
T 3vkg_A 2013 REEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQ 2092 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHH
Confidence 3567777777777778888888888877777777776654 44455555556778888877777
Q ss_pred HHHHhhhHHHH------------------HHHHHHHHhhcc
Q 024140 105 VRKLQRDVSKL------------------EVFRKTLVQSLK 127 (272)
Q Consensus 105 vKkL~rDvaKL------------------E~FKk~LmqSLq 127 (272)
++.|..+...| +.||+.|++...
T Consensus 2093 ~~~l~~~~~~L~GD~LLaaafisY~G~f~~~~R~~l~~~W~ 2133 (3245)
T 3vkg_A 2093 SENFNTQMSTVVGDVVLASAFLAYIGFFDQNFRTDLMRKWM 2133 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 77777666554 457777766543
No 34
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=93.00 E-value=1.7 Score=38.32 Aligned_cols=28 Identities=14% Similarity=0.220 Sum_probs=13.3
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 024140 99 EALTNTVRKLQRDVSKLEVFRKTLVQSL 126 (272)
Q Consensus 99 ~~La~TvKkL~rDvaKLE~FKk~LmqSL 126 (272)
..+...+..+..+++.|..=+..|...|
T Consensus 146 ~~~~~~~~e~~~e~~~l~~~r~~l~~~i 173 (256)
T 3na7_A 146 SLVENEVKNIKETQQIIFKKKEDLVEKT 173 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3334444444455555554444555544
No 35
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=92.82 E-value=3.8 Score=37.99 Aligned_cols=63 Identities=16% Similarity=0.282 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 024140 55 LRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (272)
Q Consensus 55 LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (272)
|+++|.|=..-..+++.+.+.....+.....-.+.+..+-++....|.+.|++||..+..+++
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (471)
T 3mq9_A 402 LQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASA 464 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444555555444333322111111222233334556677778888777766554
No 36
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=92.68 E-value=0.85 Score=48.28 Aligned_cols=11 Identities=27% Similarity=0.356 Sum_probs=4.0
Q ss_pred hhHHHHHHHHH
Q 024140 47 DLESEHSALRS 57 (272)
Q Consensus 47 ~LE~E~~~LR~ 57 (272)
.|+.+...|+.
T Consensus 889 ~Le~e~~~l~~ 899 (1184)
T 1i84_S 889 QLCEEKNLLQE 899 (1184)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 37
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=92.64 E-value=0.37 Score=42.44 Aligned_cols=37 Identities=32% Similarity=0.487 Sum_probs=33.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 45 Vs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~ 81 (272)
|++|-.|...|+++|..|+.+|..|++++.+++.+..
T Consensus 22 V~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~ 58 (190)
T 4emc_A 22 VANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVK 58 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 6789999999999999999999999999999987764
No 38
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=92.59 E-value=1.9 Score=37.75 Aligned_cols=67 Identities=12% Similarity=0.221 Sum_probs=32.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 40 AISTRVSDLESEHSALRSQLAEKDSR----IAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVR 106 (272)
Q Consensus 40 A~atRVs~LE~E~~~LR~~L~EKd~~----i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvK 106 (272)
.+..++..|..|+..+|.++..=... |..||+.+..|..... .+|+...+.|..|......+..++.
T Consensus 60 ~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~Sle 133 (189)
T 2v71_A 60 DLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLE 133 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHH
Confidence 34455555555555555555432222 5555555555544443 4444555555555555444444443
No 39
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=92.52 E-value=1.5 Score=35.42 Aligned_cols=21 Identities=24% Similarity=0.203 Sum_probs=12.5
Q ss_pred HHHHhhhhhHHHHHHHHHHHH
Q 024140 40 AISTRVSDLESEHSALRSQLA 60 (272)
Q Consensus 40 A~atRVs~LE~E~~~LR~~L~ 60 (272)
-+...|+.|+.|+..|+.+-+
T Consensus 42 elrr~iq~L~~el~~l~~~~~ 62 (131)
T 3tnu_A 42 ELRRTMQNLEIELQSQLSMKA 62 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHH
Confidence 344566677777666665444
No 40
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=91.65 E-value=2 Score=34.18 Aligned_cols=87 Identities=13% Similarity=0.246 Sum_probs=64.1
Q ss_pred chhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 26 PFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAEL---QSQIESIYSSLSDKLGQAQADKERLSKENEALT 102 (272)
Q Consensus 26 P~EQLdlarkIts~A~atRVs~LE~E~~~LR~~L~EKd~~i~~L---q~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La 102 (272)
|.|||.++..-+..|....+.....|...-+.+|..-..-+.+= +.|.-.=+.++-++|..+.-...|=++..+.|.
T Consensus 5 P~eql~~te~Ai~~A~~aga~~~apEl~~A~dKl~~A~~Am~~~~y~~Ar~lAEqAe~DArLAeAka~~~Ka~~~~~el~ 84 (98)
T 4fm3_A 5 PLEQMRLTEQALEQAKAVGATDDVAELKLAQDKYAAAQIAMTAESYKKARLLAEQAELDARLAESKVLTQKSKDQLGELD 84 (98)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCTTSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCCcccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999989888888888655555321 112211222333778888888888888888888
Q ss_pred HHHHHHhhhH
Q 024140 103 NTVRKLQRDV 112 (272)
Q Consensus 103 ~TvKkL~rDv 112 (272)
..|..|..++
T Consensus 85 ~~I~~LrqEl 94 (98)
T 4fm3_A 85 KSLKRLRKQL 94 (98)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8777776655
No 41
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=91.64 E-value=0.58 Score=35.49 Aligned_cols=37 Identities=19% Similarity=0.287 Sum_probs=29.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 45 Vs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~ 81 (272)
|-.|+..+..-.++|..||..|.+|++++...|..++
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~ 57 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQ 57 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777777788888888888888888887775
No 42
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=91.62 E-value=1.8 Score=43.16 Aligned_cols=64 Identities=23% Similarity=0.385 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 024140 50 SEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (272)
Q Consensus 50 ~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDva 113 (272)
+|-.+||+.+.++...|..++.-++++...+. ...+.|.+..+.+.+|+..+.+.+-.++..++
T Consensus 349 ae~~~lrQRlddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~~n~~a~~~~KiA 415 (602)
T 1cii_A 349 AEWDKLRQRLLDARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQLSGINQKIA 415 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 57889999999999999999999998888888 67788999999999999999888877776654
No 43
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=91.60 E-value=3.6 Score=33.30 Aligned_cols=80 Identities=19% Similarity=0.269 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 024140 50 SEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (272)
Q Consensus 50 ~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq~d 129 (272)
...+.|+.+..-=...+.+++.|+.....+.........++..+|..+++.|..-++.|...-.-||.=.|...-||.|=
T Consensus 3 k~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~ 82 (111)
T 2v66_B 3 QRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDF 82 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHH
Confidence 33455555555555556666666666555444445566677788888888888888888888888888888888887663
No 44
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=91.41 E-value=0.4 Score=35.86 Aligned_cols=45 Identities=24% Similarity=0.412 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 024140 60 AEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (272)
Q Consensus 60 ~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (272)
.-|+.+|.+|+.+|..|+.... .|..||..|-..|..|..++..|
T Consensus 25 eRK~~~i~~LE~~v~~le~~~~-----------~l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 25 KRKEDHLKALETQVVTLKELHS-----------STTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHc
Confidence 3588999999999887776443 46677777777777777665543
No 45
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=91.18 E-value=0.16 Score=43.20 Aligned_cols=37 Identities=22% Similarity=0.337 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 024140 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (272)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~L 122 (272)
....+..||..|+..+...-+.|.||+.-...-||+|
T Consensus 98 ~LeAE~aKLeEekQIseASRqgLrRDLeASReAKKql 134 (146)
T 2xnx_M 98 QLTIEKAKLEEEKQISDASRQSLRRDLDASREAKKQV 134 (146)
T ss_dssp HHHHHHHHHGGGTTTC---------------------
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555566655555555543
No 46
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=91.11 E-value=2.9 Score=35.61 Aligned_cols=30 Identities=23% Similarity=0.279 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 024140 86 QAQADKERLSKENEALTNTVRKLQRDVSKL 115 (272)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (272)
...+|..-|+=+.+.|...+++|..+-.+|
T Consensus 100 ~l~DEl~aLqlq~n~lE~kl~kLq~EN~~L 129 (152)
T 3a7p_A 100 RLNAALISGTIENNVLQQKLSDLKKEHSQL 129 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666666666655443
No 47
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=90.80 E-value=0.29 Score=31.71 Aligned_cols=30 Identities=23% Similarity=0.422 Sum_probs=21.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 45 Vs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~ 81 (272)
|++||.|++.|. ..+.+||+|+..||..+|
T Consensus 1 isrlee~~r~l~-------~ivq~lq~r~drle~tvq 30 (32)
T 2akf_A 1 VSRLEEDVRNLN-------AIVQKLQERLDRLEETVQ 30 (32)
T ss_dssp CCHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHH-------HHHHHHHHHHHHHHHHHh
Confidence 467888877775 455678888888877665
No 48
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=90.67 E-value=5.2 Score=31.77 Aligned_cols=71 Identities=15% Similarity=0.240 Sum_probs=44.3
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 024140 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS----DKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (272)
Q Consensus 43 tRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~----~rL~~a~ee~~kL~~E~~~La~TvKkL~rDva 113 (272)
.+++..+.|+.+|+..|.+-...-.+.+.+...++.+|- +-..+|+.+...-..++..+...+.+|...|.
T Consensus 19 ~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~~qL~ 93 (97)
T 2eqb_B 19 RELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLR 93 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556667788888888888666666666666666666655 33455555555555555555555555555443
No 49
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=90.66 E-value=4.5 Score=32.51 Aligned_cols=74 Identities=20% Similarity=0.183 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 024140 49 ESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-------DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKT 121 (272)
Q Consensus 49 E~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~-------~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~ 121 (272)
..|+..||..+..-...|..|+.+...||..|. ..+..+...+..|..|...+-..+....++...|=+.|-.
T Consensus 37 k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~ 116 (131)
T 3tnu_A 37 KSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTR 116 (131)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555565555555555555555555555554 3344444455555555555555555556666656555544
Q ss_pred H
Q 024140 122 L 122 (272)
Q Consensus 122 L 122 (272)
|
T Consensus 117 L 117 (131)
T 3tnu_A 117 L 117 (131)
T ss_dssp H
T ss_pred H
Confidence 4
No 50
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=90.52 E-value=0.31 Score=38.61 Aligned_cols=48 Identities=13% Similarity=0.227 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024140 62 KDSRIAELQSQIESIYSSLS--DKLGQAQADKERLSKENEALTNTVRKLQ 109 (272)
Q Consensus 62 Kd~~i~~Lq~r~s~le~~l~--~rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (272)
+.+.|.|+-++|+.++..-- -+++..+|+++||.+|+..-...++.|.
T Consensus 30 R~qvikEIs~Kv~~Iqn~~L~E~~IRdLNDEINkL~rEK~~WE~rI~eLG 79 (92)
T 1x4t_A 30 RRQIIGEISKKVAQIQNAGLGEFRIRDLNDEINKLLREKGHWEVRIKELG 79 (92)
T ss_dssp HHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34566777777776654433 7888999999999999999999998875
No 51
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=90.47 E-value=4.4 Score=30.50 Aligned_cols=67 Identities=18% Similarity=0.267 Sum_probs=48.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 024140 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (272)
Q Consensus 40 A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDva 113 (272)
++.+....||..+..+..... ..+.+++.++..+|.+|+ .+.++.+....|-..|.+.=-+|.-+++
T Consensus 5 ~l~~~~~sLE~~l~e~e~~~~---~~~~~~q~~i~~lE~eL~----~~r~e~~~q~~EYq~LlnvK~~Ld~EIa 71 (84)
T 1gk4_A 5 ALKGTNESLERQMREMEENFA---VEAANYQDTIGRLQDEIQ----NMKEEMARHLREYQDLLNVKMALDIEIA 71 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 345566677777776666653 346788888999998887 7777777777888888776666665554
No 52
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=90.44 E-value=3.9 Score=31.57 Aligned_cols=63 Identities=13% Similarity=0.224 Sum_probs=30.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024140 47 DLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQ 109 (272)
Q Consensus 47 ~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (272)
+||+-|..+=+.++-=...|.+|+++-..|..+.+ +.-....++|++|..|..+-...+.+|-
T Consensus 10 qLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LL 75 (81)
T 2jee_A 10 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALL 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444333333333333344444444444444443 1122355667777777777666666654
No 53
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=90.41 E-value=5 Score=32.12 Aligned_cols=75 Identities=15% Similarity=0.209 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 024140 48 LESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-------DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRK 120 (272)
Q Consensus 48 LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~-------~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk 120 (272)
-..|+..||..+..-...|..|+.+...||..|. ..+..+...+..|..|...+-..+....++...|=+.|-
T Consensus 34 ~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl 113 (129)
T 3tnu_B 34 TKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLLREYQELMNTKL 113 (129)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777666666666666666666666665 334444555555666666665666666666666666665
Q ss_pred HH
Q 024140 121 TL 122 (272)
Q Consensus 121 ~L 122 (272)
.|
T Consensus 114 ~L 115 (129)
T 3tnu_B 114 AL 115 (129)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 54
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=90.29 E-value=3.9 Score=31.27 Aligned_cols=38 Identities=21% Similarity=0.444 Sum_probs=26.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 44 RVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~ 81 (272)
.+..++.++..++.+|.+-...+.+++.++..++..+.
T Consensus 4 ~~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~ 41 (112)
T 1l8d_A 4 LLEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIE 41 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777777777777777777777776665
No 55
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=89.80 E-value=1.7 Score=36.45 Aligned_cols=46 Identities=17% Similarity=0.329 Sum_probs=30.2
Q ss_pred CchhhHHHHHHHHHHHHHHhhhhhHH---HHHHHHHHHHHHHHHHHHHHH
Q 024140 25 DPFEQLDVARKITSIAISTRVSDLES---EHSALRSQLAEKDSRIAELQS 71 (272)
Q Consensus 25 DP~EQLdlarkIts~A~atRVs~LE~---E~~~LR~~L~EKd~~i~~Lq~ 71 (272)
|=.++|.++|++.+. ...|+.+||. +...|...+..++..+..|+.
T Consensus 5 ~LEd~L~~~r~~l~~-~~~~~~~le~l~~~l~~l~~~l~~~~~e~~~L~~ 53 (135)
T 2e7s_A 5 SLEEQLNKSLKTIAS-QKAAIENYNQLKEDYNTLKRELSDRDDEVKRLRE 53 (135)
T ss_dssp -CCSTTTHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTHHH
T ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 445788888886643 3677777776 555555566667777766665
No 56
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=89.32 E-value=7.9 Score=31.66 Aligned_cols=28 Identities=11% Similarity=0.204 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 024140 92 ERLSKENEALTNTVRKLQRDVSKLEVFR 119 (272)
Q Consensus 92 ~kL~~E~~~La~TvKkL~rDvaKLE~FK 119 (272)
.++.+.+..|...+|+...=|.-+|.+|
T Consensus 78 k~Y~~~~keLd~~ik~qekiIdnFE~ik 105 (119)
T 3etw_A 78 SKYEDALKKLEAEMEQQKAVISDFEKIQ 105 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666677777777777777666666654
No 57
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=88.95 E-value=0.57 Score=44.40 Aligned_cols=39 Identities=15% Similarity=0.371 Sum_probs=24.4
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (272)
Q Consensus 42 atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l 80 (272)
++++..|+.|+..|+++..+.++.|++++.++..++..|
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 40 (403)
T 4etp_A 2 ASKIAALKEKIAALKEKIAALKEKIKDTELGMKELNEIL 40 (403)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667777777777777777777777766655555433
No 58
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=88.82 E-value=4.7 Score=30.44 Aligned_cols=46 Identities=17% Similarity=0.311 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 55 LRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNT 104 (272)
Q Consensus 55 LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~T 104 (272)
+-++|.+-.....+|++||..|+..|. .+..++..+..|-..|..+
T Consensus 5 ~~~kLq~~E~~N~~Le~~v~~le~~Le----~s~~~q~~~~~Elk~~~e~ 50 (72)
T 3cve_A 5 SHMKLQEVEIRNKDLEGQLSEMEQRLE----KSQSEQDAFRSNLKTLLEI 50 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 445666666777788888888887665 6666666666665555544
No 59
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=88.70 E-value=2.1 Score=34.10 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=13.2
Q ss_pred HHHHHhhhhhHHHHHHHHHHH
Q 024140 39 IAISTRVSDLESEHSALRSQL 59 (272)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~L 59 (272)
..+..+|..||.|..+||+..
T Consensus 15 ~~lr~ei~~Le~E~~rLr~~~ 35 (100)
T 1go4_E 15 DTLRLKVEELEGERSRLEEEK 35 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777777776543
No 60
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=88.70 E-value=6.7 Score=38.42 Aligned_cols=73 Identities=11% Similarity=0.145 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 024140 54 ALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADK--ERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLK 127 (272)
Q Consensus 54 ~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~--~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq 127 (272)
.|+..+.+++..+.+++..+......|... ....++. .+....-..|...+..|+..|.+||..-.+++..+.
T Consensus 125 ~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~-~~~i~~~~~~~~~~~i~~L~~~~~~l~~ki~~l~~~~~~~~~~~~ 199 (464)
T 1m1j_B 125 MIDNKLVKTQKQRKDNDIILSEYNTEMELH-YNYIKDNLDNNIPSSLRVLRAVIDSLHKKIQKLENAIATQTDYCR 199 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhhcccccccchhhHHHHHHHHHHHH-HHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 355566666666666666666655555411 1111111 123444556777788888888888888777776554
No 61
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=88.70 E-value=2.1 Score=34.78 Aligned_cols=16 Identities=25% Similarity=0.202 Sum_probs=8.1
Q ss_pred hhhhHHHHHHHHHHHH
Q 024140 45 VSDLESEHSALRSQLA 60 (272)
Q Consensus 45 Vs~LE~E~~~LR~~L~ 60 (272)
+.+|..+.+.|+.+|.
T Consensus 8 ~~~lq~~~~ql~~qL~ 23 (112)
T 1x79_B 8 VKKLQLMLRQANDQLE 23 (112)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555555555544
No 62
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=88.65 E-value=3 Score=31.14 Aligned_cols=42 Identities=14% Similarity=0.249 Sum_probs=30.4
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 40 A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~ 81 (272)
....|+..+|.++..........+..|..|+.|+..||..|-
T Consensus 17 ~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld 58 (81)
T 1ic2_A 17 NALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELD 58 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777777777777777777777777777665
No 63
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=88.60 E-value=2 Score=43.10 Aligned_cols=60 Identities=23% Similarity=0.264 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH---------------------HHHHHHHHHHhhc
Q 024140 68 ELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVS---------------------KLEVFRKTLVQSL 126 (272)
Q Consensus 68 ~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDva---------------------KLE~FKk~LmqSL 126 (272)
+|++++..|+..++ .-...+..|++-.+.+...++||.-||+ --|+.-|+|.|-+
T Consensus 114 ELRRrIqyLKekVd----nQlsnIrvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~QKQLeQv~ 189 (562)
T 3ghg_A 114 DLRSRIEVLKRKVI----EKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQKQLEQVI 189 (562)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchheeecchHHHHHHHHHHHHHh
Confidence 45555554444444 2223334455444555555555555543 2567888998876
Q ss_pred ccccc
Q 024140 127 KDDED 131 (272)
Q Consensus 127 q~d~~ 131 (272)
--|-.
T Consensus 190 a~dL~ 194 (562)
T 3ghg_A 190 AKDLL 194 (562)
T ss_dssp TTCCC
T ss_pred hcccC
Confidence 66544
No 64
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=88.33 E-value=3.1 Score=29.80 Aligned_cols=34 Identities=29% Similarity=0.477 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 024140 85 GQAQADKERLSKENEALTNTVRKLQRDVSKLEVF 118 (272)
Q Consensus 85 ~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~F 118 (272)
....++...|.++|..|...|..|...+..|+.+
T Consensus 26 ~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~ 59 (63)
T 2wt7_A 26 DTLQAETDQLEDEKSALQTEIANLLKEKEKLEFI 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556677778888888888888888877654
No 65
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=88.19 E-value=12 Score=32.28 Aligned_cols=81 Identities=19% Similarity=0.203 Sum_probs=39.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 024140 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKT 121 (272)
Q Consensus 45 Vs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~ 121 (272)
++.+|.-++.|+.++.-=...-..|++.+..|+.+|. .-..+..+.+..|+.....|..-++.+.--..|++.=+|+
T Consensus 43 ~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~ 122 (168)
T 3o0z_A 43 ISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKE 122 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555444444455555555555554 1223334444445555555555555555555555555555
Q ss_pred HHhh
Q 024140 122 LVQS 125 (272)
Q Consensus 122 LmqS 125 (272)
|--.
T Consensus 123 L~Ek 126 (168)
T 3o0z_A 123 AQDM 126 (168)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5433
No 66
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=87.70 E-value=8.3 Score=29.94 Aligned_cols=42 Identities=7% Similarity=0.151 Sum_probs=27.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 40 A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~ 81 (272)
||+.++..|..|....-.+..+-...+.+++.+...+|.++.
T Consensus 6 aIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~ 47 (101)
T 3u1c_A 6 AIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIV 47 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 677788777777666666666555556666666555555554
No 67
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=87.55 E-value=5.5 Score=28.11 Aligned_cols=32 Identities=28% Similarity=0.357 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 024140 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (272)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (272)
...++...|..||..|...|..|..++..|+.
T Consensus 26 ~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 26 SLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556677778888888888888777753
No 68
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=87.53 E-value=8.5 Score=29.85 Aligned_cols=77 Identities=16% Similarity=0.267 Sum_probs=38.6
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024140 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS----------DKLGQAQADKERLSKENEALTNTVRKLQ 109 (272)
Q Consensus 40 A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~----------~rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (272)
|+...+..|+.|-.+|.+.|.+=+..-+.|...+..++.++. .....-.-....+++|+++|.++..--.
T Consensus 8 ~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~ 87 (96)
T 3q8t_A 8 QLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQ 87 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555554333333333333333333332 1112233344667778888887777666
Q ss_pred hhHHHHH
Q 024140 110 RDVSKLE 116 (272)
Q Consensus 110 rDvaKLE 116 (272)
..+.||.
T Consensus 88 ~qLdkL~ 94 (96)
T 3q8t_A 88 MQLDKLK 94 (96)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 6666663
No 69
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=87.34 E-value=3 Score=34.38 Aligned_cols=33 Identities=15% Similarity=0.300 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 48 LESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (272)
Q Consensus 48 LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l 80 (272)
||.++..-.+-|.+++.....-..-|..|-..|
T Consensus 30 Lq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL 62 (121)
T 3mq7_A 30 LQQELTEAQKGFQDVEAQAATANHTVMALMASL 62 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444
No 70
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=87.14 E-value=7 Score=39.24 Aligned_cols=64 Identities=16% Similarity=0.132 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 024140 55 LRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVF 118 (272)
Q Consensus 55 LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~F 118 (272)
+.+.|.++.....+++..+.++-.+|..++..+.++.+.-..-..+|.+.|+.+.-++.|||+=
T Consensus 90 ~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvD 153 (562)
T 3ghg_A 90 IMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVD 153 (562)
T ss_dssp HHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444445555555544444442222333332222245566666666666666666653
No 71
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=86.91 E-value=10 Score=30.09 Aligned_cols=39 Identities=21% Similarity=0.232 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 024140 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQ 124 (272)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~Lmq 124 (272)
...++...|.+..+.+.+.=.+|+-.++-|+.-|..|+.
T Consensus 65 ~~~~el~~lq~~l~~~~~~~~~l~~~~~~l~~Ek~~L~~ 103 (107)
T 2no2_A 65 TSQRELQVLQGSLETSAQSEANWAAEFAELEKERDSLVS 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444455555555555555554
No 72
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=86.87 E-value=3.2 Score=31.52 Aligned_cols=66 Identities=11% Similarity=0.153 Sum_probs=39.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 024140 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (272)
Q Consensus 41 ~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDva 113 (272)
+.+....||..+..+.... ...+.+++..+..+|.+|+ .+..+.+....|-..|.+.=-+|--+++
T Consensus 8 L~~q~~~Le~~l~e~E~~~---~~~l~~~q~~i~~lE~el~----~~r~e~~~ql~EYq~LlnvK~~Le~EIa 73 (86)
T 1x8y_A 8 LQCQLAAKEAKLRDLEDSL---ARERDTSRRLLAEKEREMA----EMRARMQQQLDEYQELLDIKLALDMEIH 73 (86)
T ss_dssp ----CTTHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3444455665555555544 3355667777777777776 6666666667777777766556655554
No 73
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=86.72 E-value=1.3 Score=34.38 Aligned_cols=35 Identities=37% Similarity=0.530 Sum_probs=20.8
Q ss_pred HHHHHhhhhhHHH--------------HHHHHHHHHHHHHHHHHHHHHH
Q 024140 39 IAISTRVSDLESE--------------HSALRSQLAEKDSRIAELQSQI 73 (272)
Q Consensus 39 ~A~atRVs~LE~E--------------~~~LR~~L~EKd~~i~~Lq~r~ 73 (272)
+-+.-||+.||.| +..|+++|.+||..|.-|+.++
T Consensus 29 ~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 29 RHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3455667666644 5566666666666666665544
No 74
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=86.68 E-value=6 Score=30.26 Aligned_cols=9 Identities=44% Similarity=0.671 Sum_probs=4.8
Q ss_pred HHhhhhhHH
Q 024140 42 STRVSDLES 50 (272)
Q Consensus 42 atRVs~LE~ 50 (272)
..||..||.
T Consensus 5 e~rv~~LEr 13 (83)
T 2xdj_A 5 EDRVTQLER 13 (83)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 445555554
No 75
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=86.54 E-value=15 Score=34.05 Aligned_cols=18 Identities=11% Similarity=0.121 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 024140 64 SRIAELQSQIESIYSSLS 81 (272)
Q Consensus 64 ~~i~~Lq~r~s~le~~l~ 81 (272)
.....||+++..++.-|.
T Consensus 397 ~~~~~~~~~~~~~~~~~~ 414 (471)
T 3mq9_A 397 NVTHLLQQELTEAQKGFQ 414 (471)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhHH
Confidence 333455555555555544
No 76
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=86.53 E-value=3.3 Score=33.32 Aligned_cols=50 Identities=28% Similarity=0.483 Sum_probs=31.8
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 39 IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENE 99 (272)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~ 99 (272)
+-+-.|+++||.|..+||..-.+=...|.+|+..|. ....+|..|..||.
T Consensus 40 l~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~eve-----------rL~~ENq~L~~e~~ 89 (104)
T 3s9g_A 40 LELEKSLSRMEDENNRLRLESKRLDARVRELELELD-----------RLRAENLQLLTENE 89 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHH-----------HHHHHHHHHHHHHH
Confidence 456678888999999988875555555555554433 34445555655554
No 77
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=86.53 E-value=6.5 Score=29.79 Aligned_cols=66 Identities=15% Similarity=0.246 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 024140 50 SEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (272)
Q Consensus 50 ~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~L 122 (272)
.|+..||.+.+..+..|.+++.++. ..+.........|..|...+-..+....++...|=+.|-.|
T Consensus 3 ~eie~L~~q~~~Le~~l~e~E~~~~-------~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~L 68 (86)
T 1x8y_A 3 CQLSQLQCQLAAKEAKLRDLEDSLA-------RERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLAL 68 (86)
T ss_dssp ---------CTTHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4666777776666666666655543 22334445555555565566666666666666666665443
No 78
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=86.49 E-value=14 Score=31.33 Aligned_cols=21 Identities=24% Similarity=0.485 Sum_probs=10.0
Q ss_pred HHHHhhhHHHHHHHHHHHHhhcccc
Q 024140 105 VRKLQRDVSKLEVFRKTLVQSLKDD 129 (272)
Q Consensus 105 vKkL~rDvaKLE~FKk~LmqSLq~d 129 (272)
+..|+..|..| |++|+.+.+|
T Consensus 131 l~~lq~ql~~L----K~v~~~m~~e 151 (154)
T 2ocy_A 131 LDTLTLQLKNL----KKVMHSLDNE 151 (154)
T ss_dssp HHHHHHHHHHH----HHTTSCCC--
T ss_pred HHHHHHHHHHH----HHHHHHhhhc
Confidence 34445555555 5566665554
No 79
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=85.94 E-value=3.6 Score=31.88 Aligned_cols=34 Identities=32% Similarity=0.411 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 024140 85 GQAQADKERLSKENEALTNTVRKLQRDVSKLEVF 118 (272)
Q Consensus 85 ~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~F 118 (272)
....++...|.+||..|...|..|..+|..|..+
T Consensus 39 ~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~l 72 (87)
T 1hjb_A 39 LETQHKVLELTAENERLQKKVEQLSRELSTLRNL 72 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677889999999999999999999888543
No 80
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=85.88 E-value=3.7 Score=31.42 Aligned_cols=44 Identities=18% Similarity=0.319 Sum_probs=29.0
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 37 TSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (272)
Q Consensus 37 ts~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l 80 (272)
.-.-+..++..|..||..||-++.+-...|..|++|-..+-..|
T Consensus 21 ~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dL 64 (83)
T 2xdj_A 21 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQI 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777777777777777777766655544444
No 81
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=85.79 E-value=2.3 Score=39.78 Aligned_cols=42 Identities=17% Similarity=0.103 Sum_probs=32.2
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 40 A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~ 81 (272)
++..++++|..|+.+|...+...+..|..|++++..++..|+
T Consensus 2 ~~~~~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~ 43 (323)
T 1lwu_C 2 SGQKTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVT 43 (323)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999988888888888888888777665544
No 82
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=85.71 E-value=2 Score=30.97 Aligned_cols=35 Identities=23% Similarity=0.337 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 024140 83 KLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (272)
Q Consensus 83 rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (272)
+.....++...|.++|+.|...|..|.+++.-|..
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667778888999999999999999888844
No 83
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=85.66 E-value=12 Score=29.78 Aligned_cols=20 Identities=25% Similarity=0.356 Sum_probs=11.1
Q ss_pred HHHHHHHHHHhhhHHHHHHH
Q 024140 99 EALTNTVRKLQRDVSKLEVF 118 (272)
Q Consensus 99 ~~La~TvKkL~rDvaKLE~F 118 (272)
-.|.+.|..|.-++..|+..
T Consensus 86 ~dLE~~iesL~eEl~FLKk~ 105 (119)
T 3ol1_A 86 LDLERKVESLQEEIAFLKKL 105 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666555443
No 84
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=85.36 E-value=2.2 Score=40.45 Aligned_cols=28 Identities=25% Similarity=0.364 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 52 HSALRSQLAEKDSRIAELQSQIESIYSS 79 (272)
Q Consensus 52 ~~~LR~~L~EKd~~i~~Lq~r~s~le~~ 79 (272)
+..|+.++.+-.+.+.+|++++..++.+
T Consensus 5 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 32 (403)
T 4etp_A 5 IAALKEKIAALKEKIAALKEKIKDTELG 32 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444433
No 85
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=85.29 E-value=5.9 Score=30.84 Aligned_cols=66 Identities=11% Similarity=0.107 Sum_probs=44.1
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 024140 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSK 114 (272)
Q Consensus 42 atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaK 114 (272)
..+...||..+..+....+ ..+..++..+..||.+|+ .+.++.+....|-..|.+.--+|.-+++-
T Consensus 18 q~~~~~LE~~l~e~E~~~~---~e~~~~q~~i~~lE~eL~----~~r~e~~~ql~EYq~LlnvKl~Le~EIat 83 (95)
T 3mov_A 18 QKESRACLERIQELEDLLA---KEKDNSRRMLTDKEREMA----EIRDQMQQQLNDYEQLLDVKLALDMEISA 83 (95)
T ss_dssp CCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555443 356778888888888887 67777777777877787766667665543
No 86
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=84.99 E-value=3 Score=29.66 Aligned_cols=35 Identities=20% Similarity=0.389 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 024140 83 KLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (272)
Q Consensus 83 rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (272)
++....++...|..||+.|...|..|...++.|+.
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556667778888888888888888877743
No 87
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=84.84 E-value=1.2 Score=37.94 Aligned_cols=32 Identities=25% Similarity=0.313 Sum_probs=26.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 47 DLESEHSALRSQLAEKDSRIAELQSQIESIYS 78 (272)
Q Consensus 47 ~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~ 78 (272)
.||..++.|...|..|+..|.+|++|+..+|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 35 (198)
T 4ghu_A 4 LLESQLSRHDQMLSVHDIRLADMDLRFQVLET 35 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 67888888888888898888888888776663
No 88
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=84.45 E-value=18 Score=31.64 Aligned_cols=90 Identities=16% Similarity=0.288 Sum_probs=51.8
Q ss_pred CCchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 24 SDPFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTN 103 (272)
Q Consensus 24 ~DP~EQLdlarkIts~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~ 103 (272)
.||++ +-+.+..+++-. +..|+.++..|..+.....+.+.+|.+++..+- ++|-.-|.+-+..
T Consensus 117 ~d~~e---~i~elfd~~~~~-~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v-------------~~K~~~E~~L~~K 179 (213)
T 1ik9_A 117 ENPAE---VIRELIAYALDT-IAENQAKNEHLQKENERLLRDWNDVQGRFEKAV-------------SAKEALETDLYKR 179 (213)
T ss_dssp SCHHH---HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHH
T ss_pred CChHH---HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHH
Confidence 45554 223334444433 557777777777666665555555554333221 1333456666666
Q ss_pred HHHHHhhhHHHHHHHHHHHHhhccccc
Q 024140 104 TVRKLQRDVSKLEVFRKTLVQSLKDDE 130 (272)
Q Consensus 104 TvKkL~rDvaKLE~FKk~LmqSLq~d~ 130 (272)
-|--||--=+|+..+++.|++..|+.+
T Consensus 180 F~~lLNeKK~KIR~lq~~Ll~~~~~~~ 206 (213)
T 1ik9_A 180 FILVLNEKKTKIRSLHNKLLNAAQERE 206 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 677777777777777777777666543
No 89
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=83.76 E-value=13 Score=28.60 Aligned_cols=42 Identities=7% Similarity=0.141 Sum_probs=24.8
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 40 A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~ 81 (272)
||+.++..|--|....-.+...-...+.+++.+...++..+.
T Consensus 6 ~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~ 47 (101)
T 3u59_A 6 AIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQ 47 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 677777777666655555555555555555555555555443
No 90
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=83.45 E-value=15 Score=29.16 Aligned_cols=42 Identities=24% Similarity=0.413 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 34 RKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIES 75 (272)
Q Consensus 34 rkIts~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~ 75 (272)
-|...--++.....||+-...||.+-+++..+|.+||.|+..
T Consensus 16 EK~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd 57 (101)
T 1d7m_A 16 EKVSREQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLDE 57 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455667777889999999999999999999999988764
No 91
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=83.20 E-value=5 Score=30.23 Aligned_cols=29 Identities=10% Similarity=0.150 Sum_probs=13.4
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 024140 101 LTNTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (272)
Q Consensus 101 La~TvKkL~rDvaKLE~FKk~LmqSLq~d 129 (272)
|..+|-+.++++++|+.-=+.|.+-|++-
T Consensus 33 Ln~~v~~Qq~~Id~L~~ql~~L~~rl~~~ 61 (78)
T 3efg_A 33 LSEALADARLTGARNAELIRHLLEDLGKV 61 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445555555555555555555555443
No 92
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=83.03 E-value=13 Score=28.15 Aligned_cols=61 Identities=11% Similarity=0.204 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 024140 58 QLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (272)
Q Consensus 58 ~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~L 122 (272)
.+..|+..+..|++++...+... +...+.+.+|..|++.|..++....--+++|..-|..|
T Consensus 15 Em~~~eeel~~lke~l~k~e~~r----kele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eL 75 (89)
T 3bas_A 15 EMKEQLKQMDKMKEDLAKTERIK----KELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHL 75 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34456666777776666665444 47777777888888888777444444445555544444
No 93
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=82.93 E-value=8.4 Score=32.53 Aligned_cols=63 Identities=17% Similarity=0.258 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 024140 62 KDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEA-------------LTNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (272)
Q Consensus 62 Kd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~-------------La~TvKkL~rDvaKLE~FKk~LmqSLq~ 128 (272)
|+....+|++++..+|.+|+ +..-+..++.+|... +.+--...+...++++..|++|.+-|+.
T Consensus 27 Ke~l~~~l~~~i~q~d~elq----QLefq~kr~~~e~~~q~~~~~~p~~~~qi~~iq~q~~~ek~~r~e~k~~l~~ql~q 102 (150)
T 4dci_A 27 KEEAEREISNGIANADQQLA----QLEQEGQTVVDQVRRQSANPLDPRVQEQVANIQQQVAGKRSELEEQKRNLLQQQAQ 102 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777777777776 333333333333221 1122244555666666677666655543
No 94
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=82.79 E-value=0.74 Score=32.83 Aligned_cols=28 Identities=29% Similarity=0.516 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 024140 87 AQADKERLSKENEALTNTVRKLQRDVSK 114 (272)
Q Consensus 87 a~ee~~kL~~E~~~La~TvKkL~rDvaK 114 (272)
.+.+++.|.+...+|..-+-.|.|||++
T Consensus 29 lendnanlekdianlekdianlerdvar 56 (56)
T 3he4_A 29 LENDNANLEKDIANLEKDIANLERDVAR 56 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HhcccchHHHHHHHHHHHHHHHHHhhcC
Confidence 3456777777777777777777777753
No 95
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=82.42 E-value=5 Score=28.34 Aligned_cols=39 Identities=21% Similarity=0.245 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 61 EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTN 103 (272)
Q Consensus 61 EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~ 103 (272)
-|...+.+|+.++..|+.+-. ....++..|..|+..|-+
T Consensus 19 rKk~~~~~Le~~~~~L~~~n~----~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 19 KRKVWVQSLEKKAEDLSSLNG----QLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 455677778777777665543 444445555555555443
No 96
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=82.30 E-value=12 Score=34.73 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=16.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 024140 40 AISTRVSDLESEHSALRSQLAEKDSRI 66 (272)
Q Consensus 40 A~atRVs~LE~E~~~LR~~L~EKd~~i 66 (272)
.+..+...||..+..+|....+.+...
T Consensus 364 ~l~~~~~~le~~~~~~~~~~~~~~~~~ 390 (487)
T 3oja_A 364 TLEQKKKALDEQVSNGRRAHAELDGTL 390 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 555556666666666666655555444
No 97
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=81.93 E-value=8.2 Score=26.68 Aligned_cols=48 Identities=15% Similarity=0.250 Sum_probs=24.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSK 96 (272)
Q Consensus 45 Vs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~ 96 (272)
+.+||..+..+..+..++.+.+..+..++..+...|. .+.+++.+|..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~----~~~~~I~~~k~ 54 (60)
T 3htk_A 7 KKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLN----TIRDEVIKKKN 54 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 3445555555555555555555555555555444443 55555555443
No 98
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=81.75 E-value=9.2 Score=28.77 Aligned_cols=16 Identities=13% Similarity=0.495 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 024140 65 RIAELQSQIESIYSSL 80 (272)
Q Consensus 65 ~i~~Lq~r~s~le~~l 80 (272)
.|..|+.++..|+..|
T Consensus 30 ~Ie~LE~~i~~le~~l 45 (89)
T 2lw1_A 30 LLEDLEAKLEALQTQV 45 (89)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444433
No 99
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=81.73 E-value=10 Score=29.20 Aligned_cols=31 Identities=19% Similarity=0.342 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 024140 86 QAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (272)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE 116 (272)
+..++|..|..|+..+.+....|.++..+|.
T Consensus 31 ELKekN~~L~~e~~e~~~~~~~L~~en~qLk 61 (81)
T 2jee_A 31 ELKEKNNSLSQEVQNAQHQREELERENNHLK 61 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 5556666666666666666666666666654
No 100
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=81.46 E-value=11 Score=36.34 Aligned_cols=17 Identities=12% Similarity=0.219 Sum_probs=11.0
Q ss_pred HHHHHhhhhhHHHHHHH
Q 024140 39 IAISTRVSDLESEHSAL 55 (272)
Q Consensus 39 ~A~atRVs~LE~E~~~L 55 (272)
.-|..||.+|-.++..|
T Consensus 63 r~~~~rIe~L~~~L~~~ 79 (390)
T 1deq_A 63 QDFTSRINKLRDSLFNY 79 (390)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 56667777776665554
No 101
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=81.37 E-value=5.2 Score=30.33 Aligned_cols=33 Identities=33% Similarity=0.468 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 024140 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVF 118 (272)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~F 118 (272)
...++...|.+||..|...|..|..+|..|..+
T Consensus 40 e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~l 72 (78)
T 1gu4_A 40 ETQHKVLELTAENERLQKKVEQLSRELSTLRNL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667788899999999999999999888543
No 102
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=80.73 E-value=13 Score=34.53 Aligned_cols=90 Identities=11% Similarity=0.178 Sum_probs=57.6
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 024140 36 ITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS--DKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (272)
Q Consensus 36 Its~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~--~rL~~a~ee~~kL~~E~~~La~TvKkL~rDva 113 (272)
++--.|..|+++|+.++..++..+..|.+.+..|+..+.....-.. ..+ ...-...-|++ +..+|--|...-+
T Consensus 302 ~~~~~lq~~L~~~~~~l~~~~~~~~~k~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~e----~~~~~~~~~~~~~ 376 (406)
T 4dyl_A 302 LTVESVQHTLTSVTDELAVATEMVFRRQEMVTQLQQELRNEEENTHPRERV-QLLGKRQVLQE----ALQGLQVALCSQA 376 (406)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCGG-GGHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHH-HHHhHHhhHHH----HHHHHHHHHhHHH
Confidence 3456788999999999999999999999999999877765432111 010 00011111111 2345566777777
Q ss_pred HHHHHHHHHHhhccccc
Q 024140 114 KLEVFRKTLVQSLKDDE 130 (272)
Q Consensus 114 KLE~FKk~LmqSLq~d~ 130 (272)
||++-|-.|-+.|++-.
T Consensus 377 ~~~~q~~~~~~~~~~~~ 393 (406)
T 4dyl_A 377 KLQAQQELLQTKLEHLG 393 (406)
T ss_dssp HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 77777777766666543
No 103
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=80.60 E-value=7 Score=27.62 Aligned_cols=34 Identities=24% Similarity=0.348 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 64 SRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEAL 101 (272)
Q Consensus 64 ~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~L 101 (272)
+.+..|.+|-..|...|. .+.+++.+|.+|-+.|
T Consensus 16 ~~l~~L~~rN~rL~~~L~----~AR~el~~Lkeele~L 49 (51)
T 3m91_A 16 ARIDSLAARNSKLMETLK----EARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHh
Confidence 333444444444444443 5666666665555544
No 104
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=80.57 E-value=12 Score=31.84 Aligned_cols=28 Identities=14% Similarity=0.151 Sum_probs=14.5
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 024140 27 FEQLDVARKITSIAISTRVSDLESEHSAL 55 (272)
Q Consensus 27 ~EQLdlarkIts~A~atRVs~LE~E~~~L 55 (272)
++.|-.+|+... ....|+..||..-..+
T Consensus 19 eD~L~~~R~el~-~~~~ri~~lE~~r~~~ 46 (154)
T 2ocy_A 19 EEQLNKSLKTIA-SQKAAIENYNQLKEDY 46 (154)
T ss_dssp HHHHHHHHHHHH-HHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 345555555544 3345666666543333
No 105
>1yf2_A Type I restriction-modification enzyme, S subunit; structura genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii} SCOP: d.287.1.2 d.287.1.2
Probab=80.54 E-value=2.7 Score=36.91 Aligned_cols=39 Identities=13% Similarity=0.308 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 024140 88 QADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSL 126 (272)
Q Consensus 88 ~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSL 126 (272)
.+||.+..+--+.|-..+..+++.+.+|+.+|+.||+.|
T Consensus 378 l~eQ~~I~~~l~~ld~~i~~~~~~~~~l~~~k~~Ll~~l 416 (425)
T 1yf2_A 378 LEEQKQIAKILSSVDKSIELKKQKKEKLQRMKKKIMELL 416 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666777788888999999999999986
No 106
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=80.43 E-value=28 Score=30.12 Aligned_cols=60 Identities=20% Similarity=0.249 Sum_probs=47.5
Q ss_pred CCCCchhhHHHHHHH----HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 22 LPSDPFEQLDVARKI----TSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 22 LP~DP~EQLdlarkI----ts~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~ 81 (272)
+|.-|.|||=-.++- +-.+++.+.-.||.|-..|+..-+|+|......+.++..|-..+-
T Consensus 2 m~~yple~~~~~k~~r~e~aek~~~~k~~~le~ek~~l~~~e~~r~k~~~h~~~k~~qlre~~d 65 (169)
T 3k29_A 2 MVRYPLEPVLSIKKDRVDRAEKVVKEKRRLLELEQEKLRERESERDKVKNHYMQKIRQLREQLD 65 (169)
T ss_dssp CCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 477788886443332 267899999999999999999999999998888888887766554
No 107
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=80.10 E-value=37 Score=31.44 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=13.8
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHH
Q 024140 38 SIAISTRVSDLESEHSALRSQLAE 61 (272)
Q Consensus 38 s~A~atRVs~LE~E~~~LR~~L~E 61 (272)
..++-..|.++..+...++..+.+
T Consensus 369 ~~~le~~~~~~~~~~~~~~~~~~~ 392 (487)
T 3oja_A 369 KKALDEQVSNGRRAHAELDGTLQQ 392 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHH
Confidence 445566666666666555555543
No 108
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=79.31 E-value=5.5 Score=35.05 Aligned_cols=58 Identities=19% Similarity=0.311 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 024140 54 ALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (272)
Q Consensus 54 ~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (272)
.+.++|..-|..|..|+.....|..+|. ...+++..|+++-++|.+.++.+.-.++|-
T Consensus 10 ~~q~ql~~ad~LV~~L~~En~~L~~ql~----~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~ 67 (190)
T 4emc_A 10 SVKQQIDSADLLVANLVNENFVLSEKLD----TKATEIKQLQKQIDSLNAQVKELKTQTSQQ 67 (190)
T ss_dssp ----------CHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence 3567777888889999988888887776 888899999999999999888776666553
No 109
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=78.64 E-value=20 Score=27.61 Aligned_cols=62 Identities=18% Similarity=0.275 Sum_probs=38.3
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024140 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQR 110 (272)
Q Consensus 43 tRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~r 110 (272)
.-=..||.++..|+.+-.-....++ +..+..|- ..+..+..++.+|.-|.++|...+..+..
T Consensus 30 qqN~~Le~~i~~l~~~~~~~~~~~y--e~~i~~Lr----~~i~~~~~ek~~l~~e~dnl~~~~~~~k~ 91 (93)
T 3s4r_A 30 QQNKILLAELEQLKGQGKSRLGDLY--EEEMRELR----RQVDQLTNDKARVEVERDNLAEDIMRLRE 91 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCCcHHHH--HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345578888888776433222221 23333333 33447778888888888888888877754
No 110
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=78.59 E-value=26 Score=34.74 Aligned_cols=44 Identities=11% Similarity=0.141 Sum_probs=25.8
Q ss_pred HHHHHHhhhhhHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 38 SIAISTRVSDLESEHSA--------------LRSQLAEKDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 38 s~A~atRVs~LE~E~~~--------------LR~~L~EKd~~i~~Lq~r~s~le~~l~ 81 (272)
..-|..||.+|-..+.. +.+.|.++...+.+.+..+.++-.+|.
T Consensus 60 erdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe 117 (491)
T 1m1j_A 60 DQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVSTELR 117 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHH
Confidence 34455666665555433 455666666666666666666555555
No 111
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=78.48 E-value=11 Score=28.07 Aligned_cols=39 Identities=13% Similarity=0.240 Sum_probs=23.4
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (272)
Q Consensus 42 atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l 80 (272)
..+|..||.++..|......-...+..|+.++..|..++
T Consensus 28 ~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777655554555555655555555444
No 112
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=78.18 E-value=18 Score=30.61 Aligned_cols=33 Identities=15% Similarity=0.277 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 48 LESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (272)
Q Consensus 48 LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l 80 (272)
+|.++.+--..+..-...|.+|++.+-.+...|
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nl 58 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTVTNNL 58 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 555555555544444445555554444444333
No 113
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=78.12 E-value=24 Score=27.95 Aligned_cols=70 Identities=17% Similarity=0.127 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 024140 51 EHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRK 120 (272)
Q Consensus 51 E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk 120 (272)
++...|+.-.|.++.+.+|+.++..+...-+.++....+...+|.+|...=...|..|++++..++.=+-
T Consensus 16 qL~~~~q~~~e~e~~k~eL~~~~~~~~~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~ 85 (107)
T 2no2_A 16 QVSMARQAQVDLEREKKELEDSLERISDQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQSEA 85 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555566555555553333445555555555555544444455555555555544333
No 114
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=77.83 E-value=12 Score=29.78 Aligned_cols=52 Identities=25% Similarity=0.456 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 48 LESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTN 103 (272)
Q Consensus 48 LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~ 103 (272)
|-.++..|..++.+.+..+..|+.++..-. .+-..+..++.++..|-..|..
T Consensus 10 lre~l~~le~~~~~~~~e~~~L~~~l~eE~----~~R~~aE~~~~~ie~ElEeLTa 61 (97)
T 2eqb_B 10 LKEDYNTLKRELSDRDDEVKRLREDIAKEN----ELRTKAEEEADKLNKEVEDLTA 61 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 334555566666666666666655544322 2333555566666666555543
No 115
>1yf2_A Type I restriction-modification enzyme, S subunit; structura genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii} SCOP: d.287.1.2 d.287.1.2
Probab=77.16 E-value=3.9 Score=35.85 Aligned_cols=40 Identities=18% Similarity=0.379 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 024140 88 QADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLK 127 (272)
Q Consensus 88 ~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq 127 (272)
++||.+..+--+.|-..+..+++.+++|+.+|++||+.+=
T Consensus 168 l~EQ~~I~~~l~~ld~~i~~~~~~i~~l~~~k~~l~~~~~ 207 (425)
T 1yf2_A 168 LEEQKQIAKILTKIDEGIEIIEKSINKLERIKKGLMHKLL 207 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666667777788888889999999999998764
No 116
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=77.12 E-value=8.9 Score=26.39 Aligned_cols=20 Identities=10% Similarity=0.376 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024140 60 AEKDSRIAELQSQIESIYSS 79 (272)
Q Consensus 60 ~EKd~~i~~Lq~r~s~le~~ 79 (272)
.+.+..+++|++|++.|+.+
T Consensus 13 k~le~~naeLEervstLq~E 32 (42)
T 2oqq_A 13 KDLENKNSELEERLSTLQNE 32 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34445555666666655544
No 117
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=76.93 E-value=3.9 Score=32.76 Aligned_cols=31 Identities=29% Similarity=0.493 Sum_probs=11.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (272)
Q Consensus 46 s~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l 80 (272)
++|.+|+..||+.+. .+..|+.++..|+..|
T Consensus 2 ~~l~~~~~~l~~~~~----~~~~l~~~~~~l~~~l 32 (182)
T 3kqg_A 2 STLNAQIPELKSDLE----KASALNTKIRALQGSL 32 (182)
T ss_dssp -----------CHHH----HHHHHHHHHHHHHHHH
T ss_pred CchhhhHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 567788888887766 3445555555555444
No 118
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=76.67 E-value=3.7 Score=34.31 Aligned_cols=33 Identities=24% Similarity=0.308 Sum_probs=24.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYS 78 (272)
Q Consensus 46 s~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~ 78 (272)
..||..+..+..++..++..|++|+.|+..+|.
T Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (192)
T 2gkw_A 3 GLLESQLSRHDQMLSVHDIRLADMDLRFQVLET 35 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 457777777777777777778877777766663
No 119
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=76.66 E-value=17 Score=29.23 Aligned_cols=22 Identities=23% Similarity=0.137 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHhhhHHHH
Q 024140 94 LSKENEALTNTVRKLQRDVSKL 115 (272)
Q Consensus 94 L~~E~~~La~TvKkL~rDvaKL 115 (272)
..+|...+--+...|+++++.|
T Consensus 56 K~re~e~~Kr~~~~L~~~~~~l 77 (103)
T 4h22_A 56 KNKEFEREKHAHSILQFQFAEV 77 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555553
No 120
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=76.45 E-value=10 Score=26.73 Aligned_cols=30 Identities=17% Similarity=0.271 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 024140 86 QAQADKERLSKENEALTNTVRKLQRDVSKL 115 (272)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (272)
.....|.+|.+-...--+.+.+|..+|++|
T Consensus 20 ~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 20 SLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444455555555555555555555555554
No 121
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=76.44 E-value=4.6 Score=27.81 Aligned_cols=37 Identities=19% Similarity=0.399 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 66 IAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVR 106 (272)
Q Consensus 66 i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvK 106 (272)
+.+|+.|+..||. |..+..++..-|+.||.-|-+-+|
T Consensus 5 l~eLE~r~k~le~----~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 5 LSELENRVKDLEN----KNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHhHHHHHHHhc
Confidence 3466666666653 334666777778888877766544
No 122
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=75.95 E-value=12 Score=32.23 Aligned_cols=34 Identities=15% Similarity=0.286 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 024140 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVFR 119 (272)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FK 119 (272)
...++...|.+++..|...+..|.....|++.|-
T Consensus 60 ~L~~~~~~Le~~~~~L~~~i~~l~~~~~k~~e~~ 93 (174)
T 2p22_A 60 HLRAVEQAIEQTMHSLNAQIDVLTANRAKVQQFS 93 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666777777777777777777777776663
No 123
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=75.83 E-value=26 Score=41.63 Aligned_cols=10 Identities=20% Similarity=0.554 Sum_probs=5.1
Q ss_pred HHHhhccccc
Q 024140 121 TLVQSLKDDE 130 (272)
Q Consensus 121 ~LmqSLq~d~ 130 (272)
.|+.+|..|.
T Consensus 2077 ~Li~gL~~Ek 2086 (3245)
T 3vkg_A 2077 ALLDNLNSER 2086 (3245)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHhhhhcc
Confidence 3555555543
No 124
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=75.79 E-value=7.2 Score=37.11 Aligned_cols=32 Identities=19% Similarity=0.159 Sum_probs=17.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIY 77 (272)
Q Consensus 46 s~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le 77 (272)
..||.|+..||+++.+-++.|++++..+..++
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~ 37 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCK 37 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666655555555555554444333
No 125
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=75.59 E-value=15 Score=25.53 Aligned_cols=43 Identities=26% Similarity=0.367 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 024140 68 ELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (272)
Q Consensus 68 ~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (272)
+|+++|..||..|. .. +.++++=-.....+-.||.+-|.+||.
T Consensus 2 dlEekv~~Le~~ld----~L---qTr~ArLlae~~ssq~KlKqRit~lE~ 44 (46)
T 3swy_A 2 ALEEKVEQLGSSLD----TL---QTRFARLLAEYNATQMKMKQRLSQLES 44 (46)
T ss_dssp HHHHHHHHHHHHHH----HH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH----HH---HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67888888887764 22 223333333344556677777777775
No 126
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=75.53 E-value=11 Score=33.27 Aligned_cols=19 Identities=11% Similarity=0.277 Sum_probs=8.7
Q ss_pred hhhhHHHHHHHHHHHHHHH
Q 024140 45 VSDLESEHSALRSQLAEKD 63 (272)
Q Consensus 45 Vs~LE~E~~~LR~~L~EKd 63 (272)
+..+++++..++.+|....
T Consensus 72 l~~~~a~l~~~~a~l~~a~ 90 (369)
T 4dk0_A 72 LNTRKAALASYQAQLVARK 90 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344445555554444333
No 127
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=75.50 E-value=18 Score=31.64 Aligned_cols=19 Identities=21% Similarity=0.407 Sum_probs=8.8
Q ss_pred hhhhHHHHHHHHHHHHHHH
Q 024140 45 VSDLESEHSALRSQLAEKD 63 (272)
Q Consensus 45 Vs~LE~E~~~LR~~L~EKd 63 (272)
+..+|+++..++.++..-.
T Consensus 71 ~~~~~a~l~~~~a~l~~a~ 89 (341)
T 3fpp_A 71 IKEVEATLMELRAQRQQAE 89 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555444333
No 128
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=75.46 E-value=3.7 Score=39.13 Aligned_cols=47 Identities=19% Similarity=0.222 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccccC
Q 024140 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDDEDA 132 (272)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq~d~~~ 132 (272)
+..+++.+|.++...+...++.+...+-+.|..+|.|-.-|+|-..+
T Consensus 14 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~gn 60 (412)
T 3u06_A 14 HLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRDN 60 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 44445555555555555555555555666666666666666665543
No 129
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=75.43 E-value=30 Score=27.72 Aligned_cols=73 Identities=18% Similarity=0.264 Sum_probs=45.1
Q ss_pred hhhHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 024140 46 SDLESEHSALRSQLAEKD--------SRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (272)
Q Consensus 46 s~LE~E~~~LR~~L~EKd--------~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (272)
..||.|..+|.+.|..-| +..++|...|-.|-..++..|..+.-+.+.+-.=..+-.-..++...|+.||+.
T Consensus 16 ~tLe~Eta~L~~al~~edsd~E~~~~rilhdl~seV~~LK~dv~~~L~k~~~e~qe~~~FIKa~kvL~~rns~DI~~ire 95 (101)
T 4aj5_1 16 STLDCETARLQRALDGEESDFEDYPMRILYDLHSEVQTLKDDINILLDKARLENQEGIDFIKATKVLMEKNSMDIMKIRE 95 (101)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 468999999999988322 345788888888877777444444444333332222223334455567777765
Q ss_pred H
Q 024140 118 F 118 (272)
Q Consensus 118 F 118 (272)
|
T Consensus 96 ~ 96 (101)
T 4aj5_1 96 Y 96 (101)
T ss_dssp H
T ss_pred H
Confidence 5
No 130
>4afl_A P29ING4, inhibitor of growth protein 4; cell cycle, tumour suppressor, chromatin remodelling; 2.28A {Homo sapiens}
Probab=75.29 E-value=25 Score=26.78 Aligned_cols=76 Identities=12% Similarity=0.254 Sum_probs=53.5
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---------------DKLGQAQADKERLSKENEALTNTV 105 (272)
Q Consensus 41 ~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~---------------~rL~~a~ee~~kL~~E~~~La~Tv 105 (272)
|--.|..|=.|+.++=..+.|+|....++..++..+-..+. .++.....+...|.+||=.|++++
T Consensus 9 yld~ie~LP~El~r~~~~irelD~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~l~~I~~~~~~~~~l~dEKv~lA~~~ 88 (104)
T 4afl_A 9 YLDSIENLPFELQRNFQLMRDLDQRTEDLKAEIDKLATEYMSSARSLSSEEKLALLKQIQEAYGKCKEFGDDKVQLAMQT 88 (104)
T ss_dssp HHHSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888888888898888887777665543332 345666777888889998888875
Q ss_pred HH-HhhhHHHHH
Q 024140 106 RK-LQRDVSKLE 116 (272)
Q Consensus 106 Kk-L~rDvaKLE 116 (272)
-- +.|.+.+|+
T Consensus 89 ~dlvdkhirrLD 100 (104)
T 4afl_A 89 YEMVDKHIRRLD 100 (104)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 43 345555554
No 131
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=75.17 E-value=47 Score=29.91 Aligned_cols=41 Identities=20% Similarity=0.239 Sum_probs=24.4
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 41 ~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~ 81 (272)
|..||+-|=.|++.+-...+.+...+..-=+.|-..|..|+
T Consensus 67 IsdklgvLl~e~ge~e~~~a~~~d~yR~~LK~IR~~E~svq 107 (234)
T 3plt_A 67 VTDKLGVLIYELGELQDQFIDKYDQYRVTLKSIRNIEASVQ 107 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45666666677666666666665555444445555555555
No 132
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=75.16 E-value=15 Score=36.04 Aligned_cols=61 Identities=16% Similarity=0.259 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 024140 67 AELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (272)
Q Consensus 67 ~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq~ 128 (272)
.+|+.+.+.+-.++ ++++..-++...|..|-..|...+|.|...+..+|.=-..++.+|-+
T Consensus 50 ~~l~~~rn~~sk~i-~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~iPN 110 (485)
T 3qne_A 50 DEHNKKLNSVQKEI-GKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQVGN 110 (485)
T ss_dssp HHHHHHHHHHHHHH-HHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHH-HHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 34444444444433 23334445566788888888888888888888888777777877754
No 133
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=75.12 E-value=24 Score=28.27 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 51 EHSALRSQLAEKDSRIAELQSQIE 74 (272)
Q Consensus 51 E~~~LR~~L~EKd~~i~~Lq~r~s 74 (272)
||..||.+|.|.++.+++++....
T Consensus 31 qVdlLKD~LEe~eE~~aql~Re~~ 54 (103)
T 4h22_A 31 QVDTLKDMLLELEEQLAESRRQYE 54 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555444333
No 134
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=74.58 E-value=2.6 Score=38.43 Aligned_cols=36 Identities=19% Similarity=0.307 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 024140 82 DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (272)
Q Consensus 82 ~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (272)
.|++....++..|...|..|..+.|.+.++|.+|+.
T Consensus 54 ~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~Lke 89 (251)
T 3m9b_A 54 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALRE 89 (251)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888888888888888888888877744
No 135
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=74.56 E-value=4.6 Score=26.69 Aligned_cols=28 Identities=32% Similarity=0.399 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024140 83 KLGQAQADKERLSKENEALTNTVRKLQR 110 (272)
Q Consensus 83 rL~~a~ee~~kL~~E~~~La~TvKkL~r 110 (272)
|+.+..+..++|..+|..|++.|.+|..
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4556667777888888888888777653
No 136
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=74.53 E-value=3.8 Score=26.92 Aligned_cols=27 Identities=33% Similarity=0.438 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024140 83 KLGQAQADKERLSKENEALTNTVRKLQ 109 (272)
Q Consensus 83 rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (272)
|+.+..++.+.|..||..|.+-|.+|.
T Consensus 1 RM~QLE~kVEeLl~~n~~Le~EV~RLk 27 (33)
T 3m48_A 1 RMAQLEAKVEELLSKNWNLENEVARLK 27 (33)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 344556667777777777777666654
No 137
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=74.36 E-value=26 Score=26.55 Aligned_cols=15 Identities=27% Similarity=0.414 Sum_probs=5.9
Q ss_pred HHHHHHHHHhhhHHH
Q 024140 100 ALTNTVRKLQRDVSK 114 (272)
Q Consensus 100 ~La~TvKkL~rDvaK 114 (272)
.|...|..|.-+++.
T Consensus 67 dLE~kvesL~eEl~f 81 (86)
T 3swk_A 67 DLERKVESLQEEIAF 81 (86)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444443333
No 138
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=73.92 E-value=8.3 Score=29.95 Aligned_cols=66 Identities=17% Similarity=0.168 Sum_probs=39.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 024140 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (272)
Q Consensus 46 s~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (272)
.+|++++..|+.+...-+..|++++.++...+. ....++..+|..|-+.+-+..-.|-.-+|-++.
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~a~L~~~~~------~~~~~~hI~~Lh~YNeiKD~gq~L~g~iA~~rg 69 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDALAKLKNRDA------KQTVQKHIDLLHTYNEIRDIALGMIGKVAEHEK 69 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC
Confidence 456666666666666666666665544432211 134567777777777777777666666665543
No 139
>1ydx_A Type I restriction enzyme specificity protein Mg4; type-I HSDS, DNA binding protein; 2.30A {Mycoplasma genitalium} SCOP: d.287.1.2 d.287.1.2
Probab=73.82 E-value=5.2 Score=35.69 Aligned_cols=41 Identities=22% Similarity=0.280 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 024140 87 AQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLK 127 (272)
Q Consensus 87 a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq 127 (272)
-.++|.+..+--+.|-..+..+++.+.+|+.+|+.||+.+=
T Consensus 353 pl~eQ~~I~~~l~~id~~i~~~~~~i~~L~~lk~~LL~~lf 393 (406)
T 1ydx_A 353 SFQLQRKAGKIVFLLDQKLDQYKKELSSLTVIRDTLLKKLF 393 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566666666667777788888999999999999999864
No 140
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=73.80 E-value=26 Score=26.23 Aligned_cols=53 Identities=15% Similarity=0.218 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 024140 70 QSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (272)
Q Consensus 70 q~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~L 122 (272)
+..+..+|..+...+......+..|..|...+-..+....++...|=+.|-.|
T Consensus 14 E~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~L 66 (84)
T 1gk4_A 14 ERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMAL 66 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333333333344556666666666666666666777777777776666544
No 141
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=73.46 E-value=17 Score=34.82 Aligned_cols=68 Identities=15% Similarity=0.177 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 024140 61 EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (272)
Q Consensus 61 EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq~d 129 (272)
+-...+.+|+.+.+.+..++. +++..-++..+|..|-..|...+|.|..++..+|.=-..++.+|-+-
T Consensus 42 ~~~~~~~~l~~~~n~~sk~i~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~ 109 (455)
T 2dq0_A 42 TKLKEINRLRHERNKIAVEIG-KRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYYLWRLPNI 109 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 333344455555555544442 33333355667888888888888888888888888778888887654
No 142
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=73.41 E-value=29 Score=26.76 Aligned_cols=34 Identities=12% Similarity=0.170 Sum_probs=14.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 47 DLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (272)
Q Consensus 47 ~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l 80 (272)
.|+.++..|+..=++--+.+.+|++.-..++.+|
T Consensus 8 ~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el 41 (96)
T 3q8t_A 8 QLQRELKELALEEERLIQELEDVEKNRKVVAENL 41 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3444444444444444444444444444444444
No 143
>2fcw_A Alpha-2-macroglobulin receptor-associated protein; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: a.13.1.1 PDB: 2ftu_A
Probab=73.40 E-value=35 Score=27.61 Aligned_cols=72 Identities=21% Similarity=0.307 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH-----HHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHH
Q 024140 49 ESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQA-----QADKERLSKENEALTNTVRKLQRDVSK-LEVFR 119 (272)
Q Consensus 49 E~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~---~rL~~a-----~ee~~kL~~E~~~La~TvKkL~rDvaK-LE~FK 119 (272)
+.|...||..|.==+..|.-+ .-++.+|. .+++.. .+++.+...++..|.+.+|++.+-|.| ++.++
T Consensus 23 ~~ELeSlK~EL~HfE~rl~K~----rH~~~el~l~~~k~~~~~~~g~~e~~s~~~ek~~~le~k~Kk~~~kV~Kl~~dl~ 98 (109)
T 2fcw_A 23 DKELEAFREELKHFEAKIEKH----NHYQKQLEIAHEKLRHAESVGDGERVSRSREKHALLEGRTKELGYTVKKHLQDLS 98 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777888887433333322 22222222 222111 122334556688888999999999988 56777
Q ss_pred HHHHh
Q 024140 120 KTLVQ 124 (272)
Q Consensus 120 k~Lmq 124 (272)
..+|+
T Consensus 99 ~rI~~ 103 (109)
T 2fcw_A 99 GRISR 103 (109)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 77775
No 144
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=73.10 E-value=22 Score=31.63 Aligned_cols=62 Identities=15% Similarity=0.289 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHH
Q 024140 56 RSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRD-VSKLEVF 118 (272)
Q Consensus 56 R~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rD-vaKLE~F 118 (272)
|..|.|--.++..|.++|..++.++ ++|+.-+++...|+++-..|+..++.|... +..||.+
T Consensus 107 R~AL~eaLeEN~~Lh~~ie~l~eEi-~~LkeEn~eLkeLae~~q~la~vi~~l~~~~~~~~e~~ 169 (209)
T 2wvr_A 107 RKALYEALKENEKLHKEIEQKDNEI-ARLKKENKELAEVAEHVQYMAELIERLNGEPLDNFESL 169 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCc
Confidence 4444455566677777777777666 366666666777777777777777776542 3334443
No 145
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=73.10 E-value=24 Score=29.85 Aligned_cols=30 Identities=20% Similarity=0.153 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 024140 88 QADKERLSKENEALTNTVRKLQRDVSKLEV 117 (272)
Q Consensus 88 ~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (272)
.+...++..+.+.|....+.|+.+.+|||.
T Consensus 79 r~akk~~ea~la~l~~~~~~LeAE~aKLeE 108 (146)
T 2xnx_M 79 RNLLGNAKLELDQLSSEKEQLTIEKAKLEE 108 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHhHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 333344444444444455555555555543
No 146
>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T*
Probab=72.93 E-value=35 Score=30.18 Aligned_cols=50 Identities=20% Similarity=0.170 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Q 024140 48 LESEHSALRSQLA-EKDSRIAELQSQIESIYSSLS-----DKLGQAQADKERLSKE 97 (272)
Q Consensus 48 LE~E~~~LR~~L~-EKd~~i~~Lq~r~s~le~~l~-----~rL~~a~ee~~kL~~E 97 (272)
|+.++......|. =|+.+|..|++++......-. .-|-++-.|+.+|+-|
T Consensus 82 ~D~~~~~i~~~ln~~r~~~i~~lk~~Ie~~k~~q~~~~~~~~Lf~~~kEn~al~lE 137 (214)
T 2cly_A 82 ADKLNEQKIAQLEEVKQASIKQIQDAIDMEKSQQALVQKRHYLFDVQRNNIAMALE 137 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666 577888888888876443322 4444555555555544
No 147
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=72.85 E-value=8.3 Score=29.59 Aligned_cols=30 Identities=27% Similarity=0.326 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 024140 86 QAQADKERLSKENEALTNTVRKLQRDVSKL 115 (272)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (272)
+..-++.-|..|..++.....+++.-+..|
T Consensus 41 ELt~E~e~l~~El~s~~~~~~r~~~ri~el 70 (77)
T 2w83_C 41 ELTCEKDVLQGELEAVKQAKLKLEEKNREL 70 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444333
No 148
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=72.49 E-value=31 Score=26.62 Aligned_cols=55 Identities=22% Similarity=0.270 Sum_probs=33.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKL 108 (272)
Q Consensus 46 s~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL 108 (272)
+.||+||. -|+-.-.+| .++...-..++.+|+.+..+|..|..|...|...++.|
T Consensus 17 SALeaEIq-------AKQ~i~EEL-s~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 17 EALEEEVL-------TRQSLSREM-EAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHH-------HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-------HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566654 344444455 34444444444888899988888888766665555543
No 149
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=72.43 E-value=25 Score=27.24 Aligned_cols=51 Identities=18% Similarity=0.272 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 57 SQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKL 108 (272)
Q Consensus 57 ~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL 108 (272)
..|.|--..+..|.+++..++.++ ++|+.-+++...|+..-.-|+.-+++|
T Consensus 31 ~AL~eaL~EN~~Lh~~ie~~~eEi-~~Lk~en~~L~elA~~~q~la~~i~~L 81 (83)
T 1wlq_A 31 KALYEALKENEKLHKEIEQKDSEI-ARLRKENKDLAEVAEHVQYMAEVIERL 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444555666666666666665 355555555555666656666666555
No 150
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=72.00 E-value=4.7 Score=26.49 Aligned_cols=26 Identities=4% Similarity=0.132 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024140 84 LGQAQADKERLSKENEALTNTVRKLQ 109 (272)
Q Consensus 84 L~~a~ee~~kL~~E~~~La~TvKkL~ 109 (272)
+.+..++.++|..+|..|.+.|.+|.
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk 27 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 45666677777778877777666553
No 151
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=71.67 E-value=5.6 Score=28.23 Aligned_cols=20 Identities=25% Similarity=0.393 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024140 61 EKDSRIAELQSQIESIYSSL 80 (272)
Q Consensus 61 EKd~~i~~Lq~r~s~le~~l 80 (272)
-|-..|.+|+.++..|+.+-
T Consensus 19 rKk~~~~~Le~~v~~L~~~n 38 (62)
T 1jnm_A 19 RKLERIARLEEKVKTLKAQN 38 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777666543
No 152
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=71.48 E-value=5 Score=26.51 Aligned_cols=27 Identities=11% Similarity=0.263 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024140 83 KLGQAQADKERLSKENEALTNTVRKLQ 109 (272)
Q Consensus 83 rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (272)
|+.+..++.+.|..+|..|.+-|.+|.
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RLk 28 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARIK 28 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 556677777788888888777776664
No 153
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=71.41 E-value=15 Score=32.55 Aligned_cols=90 Identities=24% Similarity=0.303 Sum_probs=44.0
Q ss_pred hhHHHhcCCCCch---------hhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 15 PEEVLQVLPSDPF---------EQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLG 85 (272)
Q Consensus 15 p~eil~vLP~DP~---------EQLdlarkIts~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~ 85 (272)
.++|..+|=.+|+ ++|.|.... ..=||=.|.++.+||++ +..||.+|
T Consensus 33 ~~~V~~yL~~~PdFf~~~~~Ll~~L~lph~~-----~~aVSL~erQ~~~LR~r--------------~~~Le~~L----- 88 (252)
T 3e98_A 33 AEQVAAYLSQHPEFFVEHDELIPELRIPHQP-----GDAVSLVERQVRLLRER--------------NIEMRHRL----- 88 (252)
T ss_dssp ---------------------------------------CHHHHHHHHHHHHH--------------HHHHHHHH-----
T ss_pred HHHHHHHHHhCCHHHhhCHHHHHhCCCCCCC-----CCcccHHHHHHHHHHHH--------------HHHHHHHH-----
Confidence 5678999998886 344444432 12245566666666653 33333222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHH---HHHHHHHHHHhhcccccc
Q 024140 86 QAQADKERLSKENEALTNTVRKLQRDVS---KLEVFRKTLVQSLKDDED 131 (272)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDva---KLE~FKk~LmqSLq~d~~ 131 (272)
.+....+++|+.+.+.+..|...|- -|+.|-+.|...|+++=.
T Consensus 89 ---~~Li~~A~~Ne~l~~~~~~l~l~LL~a~sl~~l~~~L~~~l~~~F~ 134 (252)
T 3e98_A 89 ---SQLMDVARENDRLFDKTRRLVLDLLDATSLEDVVSTVEDSLRHEFQ 134 (252)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHTSC
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHCC
Confidence 2445567888899999999988887 577888888888876644
No 154
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=71.04 E-value=21 Score=26.74 Aligned_cols=42 Identities=19% Similarity=0.355 Sum_probs=22.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHHH-----HH-HHHHHHHHHHHHHHHHHH
Q 024140 40 AISTRVSDLESEHSALRSQLAE-----KD-SRIAELQSQIESIYSSLS 81 (272)
Q Consensus 40 A~atRVs~LE~E~~~LR~~L~E-----Kd-~~i~~Lq~r~s~le~~l~ 81 (272)
.|=.++..||.++..|-.+|++ .| ..+.+|..++..++..|-
T Consensus 26 ~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe 73 (89)
T 2lw1_A 26 QLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELE 73 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666653 11 345555555555554443
No 155
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=71.04 E-value=11 Score=33.58 Aligned_cols=60 Identities=23% Similarity=0.317 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Q 024140 61 EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQS 125 (272)
Q Consensus 61 EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqS 125 (272)
|+.+..++|+..+-+.-.+++ ..+--.++|+.|++.|...++||..|-+..=+| .++.++
T Consensus 27 ~~~~~~~~~~a~~~s~~s~~~----dl~~s~~~l~ae~~~L~~~l~kLeGn~se~ITf-e~~~ks 86 (206)
T 3oa7_A 27 ERTEALQQLRVNYGSFVSEYN----DLTKSHNTLSKELDNLRSRFGNLEGNTSERITI-KNILQS 86 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHCCGGGCCCH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhHHHHHHHHHHHccCCHHhccCH-HHHhhc
Confidence 556666666666666665655 555566779999999999999999999987677 344444
No 156
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=70.81 E-value=16 Score=26.27 Aligned_cols=45 Identities=13% Similarity=0.163 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 33 ARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYS 78 (272)
Q Consensus 33 arkIts~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~ 78 (272)
..+|++. ....|..+..+++.+-++...=.+.|..|+.|++.+|.
T Consensus 18 lEnIv~~-l~~eve~~~~~lea~~rq~~~d~~~Ie~Le~kv~~l~~ 62 (65)
T 3m0d_C 18 FENIVAV-LNKEVEASHLALATSIHQSQLDRERILSLEQRVVELQQ 62 (65)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Confidence 3455543 44455555555555533333324555555555555554
No 157
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=70.57 E-value=17 Score=25.24 Aligned_cols=35 Identities=29% Similarity=0.416 Sum_probs=27.5
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIY 77 (272)
Q Consensus 43 tRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le 77 (272)
.-|..||.|-..|+.+-.-|...|+-|++.+..|-
T Consensus 10 nevaslenenetlkkknlhkkdliaylekeianlr 44 (49)
T 3he5_A 10 NEVASLENENETLKKKNLHKKDLIAYLEKEIANLR 44 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 45778888888898888888888888887776554
No 158
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=70.48 E-value=19 Score=28.08 Aligned_cols=57 Identities=23% Similarity=0.378 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024140 53 SALRSQLAEKDSRIAELQSQIESIYSS----LS----DKLGQAQADKERLSKENEALTNTVRKLQ 109 (272)
Q Consensus 53 ~~LR~~L~EKd~~i~~Lq~r~s~le~~----l~----~rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (272)
..||+.+.+|.-.|..|.+.+.....+ ++ -.|.+|..+...|+..-..|.+--++.|
T Consensus 25 ~~lrq~I~DKQ~~i~~Lt~eLq~A~~eaNpaeIA~~~~~L~qAraDL~~l~r~~av~g~E~RRIN 89 (90)
T 4b6x_A 25 AALRQEIEDKQLMVNNLTDELQDAIDEANPAEIANTSQQLRHARADLADLQRRFAVLRNEDRRIN 89 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 468888888888887776554433321 11 3444555555555555444444444433
No 159
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=70.09 E-value=37 Score=32.56 Aligned_cols=32 Identities=6% Similarity=0.105 Sum_probs=17.5
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQS 71 (272)
Q Consensus 40 A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~ 71 (272)
.|...|..||.-+..|-..-.+-...+..|+.
T Consensus 35 ~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~ 66 (409)
T 1m1j_C 35 TTDGELLEIEGLLQQATNSTGSIEYLIQHIKT 66 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666665555555544444444443
No 160
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=70.07 E-value=5.8 Score=26.22 Aligned_cols=27 Identities=19% Similarity=0.191 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024140 83 KLGQAQADKERLSKENEALTNTVRKLQ 109 (272)
Q Consensus 83 rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (272)
|+.+..+..++|.+++..|++.|.+|.
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl~ 28 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARVA 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 456667777788888888888777664
No 161
>3m0a_A TNF receptor-associated factor 2; TRAF2: CIAP2 and the TRAF1: TRAF2: CIAP2 complexes, apoptosi coil, cytoplasm, metal-binding; 2.61A {Homo sapiens} PDB: 3m0d_A 3m06_A
Probab=70.06 E-value=22 Score=25.07 Aligned_cols=14 Identities=21% Similarity=0.211 Sum_probs=5.5
Q ss_pred hHHHHHHHHHHHHH
Q 024140 48 LESEHSALRSQLAE 61 (272)
Q Consensus 48 LE~E~~~LR~~L~E 61 (272)
|+.++..|..++..
T Consensus 3 ~~~~~~~le~k~~~ 16 (66)
T 3m0a_A 3 LLQRCESLEKKTAT 16 (66)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHH
Confidence 33344444333333
No 162
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=69.92 E-value=5.1 Score=26.78 Aligned_cols=29 Identities=28% Similarity=0.377 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 024140 84 LGQAQADKERLSKENEALTNTVRKLQRDV 112 (272)
Q Consensus 84 L~~a~ee~~kL~~E~~~La~TvKkL~rDv 112 (272)
+.+..++.++|..+|..|.+.|.+|..-|
T Consensus 3 MnQLE~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 34445555666666666666665554433
No 163
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=69.88 E-value=5.5 Score=26.31 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024140 83 KLGQAQADKERLSKENEALTNTVRKLQ 109 (272)
Q Consensus 83 rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (272)
|+.+..++.+.|..||..|.+.|.+|.
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk 28 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLK 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 344555666677777777776666553
No 164
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=69.85 E-value=5.6 Score=26.29 Aligned_cols=27 Identities=11% Similarity=0.157 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024140 83 KLGQAQADKERLSKENEALTNTVRKLQ 109 (272)
Q Consensus 83 rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (272)
|+.+..++.++|..+|..|.+.|.+|.
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk 28 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIX 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 445666677777777777777666553
No 165
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=69.71 E-value=36 Score=26.26 Aligned_cols=20 Identities=20% Similarity=0.459 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHhhhHHHHH
Q 024140 97 ENEALTNTVRKLQRDVSKLE 116 (272)
Q Consensus 97 E~~~La~TvKkL~rDvaKLE 116 (272)
.|..+.+.|+.-.+||.+|+
T Consensus 79 ~R~~~~~klr~Yk~dL~~lk 98 (102)
T 2qyw_A 79 FRNPMMSKLRNYRKDLAKLH 98 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666653
No 166
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=69.49 E-value=12 Score=28.91 Aligned_cols=17 Identities=24% Similarity=0.413 Sum_probs=6.5
Q ss_pred HHHhhhhhHHHHHHHHH
Q 024140 41 ISTRVSDLESEHSALRS 57 (272)
Q Consensus 41 ~atRVs~LE~E~~~LR~ 57 (272)
+..||..||.|-..||.
T Consensus 41 ~~~r~~~Le~EN~~Lr~ 57 (87)
T 1hjb_A 41 TQHKVLELTAENERLQK 57 (87)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 167
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=69.11 E-value=31 Score=32.29 Aligned_cols=22 Identities=5% Similarity=0.191 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHhhhHHH
Q 024140 93 RLSKENEALTNTVRKLQRDVSK 114 (272)
Q Consensus 93 kL~~E~~~La~TvKkL~rDvaK 114 (272)
++..+|+.++..-+.|.+++..
T Consensus 80 e~~~~Rd~~a~~k~~Le~~ier 101 (302)
T 3ibp_A 80 EAIVERDEVGARKNAVDEEIER 101 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555544
No 168
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=68.89 E-value=8.1 Score=28.76 Aligned_cols=64 Identities=8% Similarity=0.146 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 024140 53 SALRSQLAEKDSRIAELQSQIESIYSSLSDKLG---QAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (272)
Q Consensus 53 ~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~---~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (272)
..+=.+|...|.++..|.+++..|+.++. +|. ...++...|-++|=.|-+.+-.+-+...+-+.
T Consensus 6 ~d~I~~Lk~~d~~f~~L~~eH~~LD~~I~-~le~~~~~~~~l~~LKk~KL~LKDeI~~lL~~~~~~~~ 72 (76)
T 1zhc_A 6 RDEISVLKANNPHFDKIFEKHNQLDDDIK-TAEQQNASDAEVSHMKKQKLKLKDEIHSMIIEYREKQK 72 (76)
T ss_dssp HHHHHHSTTTSTTHHHHHHHHHHHHHHHH-HHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHH-HHhcCCCChHHHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 34445666778889999999999998887 111 11227778888888887777766665554443
No 169
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=68.68 E-value=41 Score=33.05 Aligned_cols=88 Identities=11% Similarity=0.114 Sum_probs=60.7
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH---------HHHHHHH
Q 024140 39 IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS------DKLGQAQADKERLSK---------ENEALTN 103 (272)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~------~rL~~a~ee~~kL~~---------E~~~La~ 103 (272)
--+..-|..||..+..|-+.-.+-.+.|..|+.-+...+.... .+-+..+|++.+..+ -.+.|.+
T Consensus 91 ~~V~~dl~~Le~~l~~isn~Ts~a~~~v~~ik~s~~~~q~~~~~n~~~~~~s~~mle~~~~~~~~~~~~~~~~~i~~l~~ 170 (461)
T 3ghg_B 91 RPIRNSVDELNNNVEAVSQTSSSSFQYMYLLKDLWQKRQKQVKDNENVVNEYSSELEKHQLYIDETVNSNIPTNLRVLRS 170 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHTHHHHHHHTHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHH
Confidence 3477788888888888888888888888888877777666555 223344555544444 3456777
Q ss_pred HHHHHhhhHHHHHHHHHHHHhhc
Q 024140 104 TVRKLQRDVSKLEVFRKTLVQSL 126 (272)
Q Consensus 104 TvKkL~rDvaKLE~FKk~LmqSL 126 (272)
.+.++++.|.+||.--.+++.--
T Consensus 171 ~~~~~~~~i~~l~~~~~~~~~~c 193 (461)
T 3ghg_B 171 ILENLRSKIQKLESDVSAQMEYC 193 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhhhhhc
Confidence 78888888888877766666553
No 170
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=68.50 E-value=37 Score=25.90 Aligned_cols=60 Identities=12% Similarity=0.237 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 024140 53 SALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (272)
Q Consensus 53 ~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE 116 (272)
++||..+......|+.|+.=-..|..--+ ...+...+|..|.+.|...|..|.+-.+-|+
T Consensus 14 rrl~E~~~q~qaEl~sLrrT~~EL~~G~~----KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~ 73 (78)
T 3iv1_A 14 WRMKEEMDRAQAELNALKRTEEDLKKGHQ----KLEEMVTRLDQEVAEVDKNIELLKKKDEELS 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666544333333222 3445567788888888888777776655554
No 171
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=68.31 E-value=22 Score=26.99 Aligned_cols=50 Identities=22% Similarity=0.362 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 024140 67 AELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLV 123 (272)
Q Consensus 67 ~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~Lm 123 (272)
.+|++||..||..|. .. +.++++=-.....+-.||.+-|.+||.+=+.+.
T Consensus 3 ~dlEEKv~~LE~sld----~L---QTrfARLLaEy~ssQ~KLKqRit~LE~~~~~~~ 52 (74)
T 3swf_A 3 MGLEEKVTRMESSVD----LL---QTRFARILAEYESMQQKLKQRLTKVEKFLKPLI 52 (74)
T ss_dssp -CHHHHHHHHHHHHH----HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHH----HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 468889998888775 22 233333344455667788899999998766543
No 172
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=68.27 E-value=40 Score=26.14 Aligned_cols=62 Identities=24% Similarity=0.325 Sum_probs=29.4
Q ss_pred HHHHHHHHHhhhhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024140 35 KITSIAISTRVSDLESE--HSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQR 110 (272)
Q Consensus 35 kIts~A~atRVs~LE~E--~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~r 110 (272)
+-..-||..|-...|.+ -..-+++|. .|++++ + ..|..-.+++.+|+++.+.+...|++|..
T Consensus 16 r~aggaFgKrEaA~Ee~YfrqkekEqL~-------~LKkkl---~----~el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 16 RDAGGAFGKREQAEEERYFRARAKEQLA-------ALKKHK---E----NEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH---H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCcccHHHHhHHHHHHHHHHHHHH-------HHHHHH---H----HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33456777777777777 222223332 144333 1 12224445555566655555555555543
No 173
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=68.16 E-value=6 Score=29.48 Aligned_cols=18 Identities=33% Similarity=0.438 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 024140 54 ALRSQLAEKDSRIAELQS 71 (272)
Q Consensus 54 ~LR~~L~EKd~~i~~Lq~ 71 (272)
.|...+..||..|.+|+.
T Consensus 15 ~~~~~i~~Kde~I~eLE~ 32 (67)
T 1zxa_A 15 DFAKILMLKEERIKELEK 32 (67)
T ss_dssp --CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccHHHHHHHHH
Confidence 344455555555555543
No 174
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=68.04 E-value=44 Score=32.03 Aligned_cols=10 Identities=10% Similarity=-0.024 Sum_probs=6.6
Q ss_pred ccccCCCCcc
Q 024140 244 LSSVHSSHSS 253 (272)
Q Consensus 244 ~~~~~ss~~S 253 (272)
-|||..=+.+
T Consensus 333 GWWy~~C~~s 342 (409)
T 1m1j_C 333 GWWMNRCHAG 342 (409)
T ss_dssp CBCCSSSCSE
T ss_pred CCcCCCCCCC
Confidence 4688765555
No 175
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=67.78 E-value=52 Score=29.68 Aligned_cols=97 Identities=19% Similarity=0.277 Sum_probs=45.5
Q ss_pred HhcCCCCchhhHHHHHHHHHHHHHHhhhhhHHHH--HHHHHHHH--HHHHHHHHHHHHHHHHHHHHH-------------
Q 024140 19 LQVLPSDPFEQLDVARKITSIAISTRVSDLESEH--SALRSQLA--EKDSRIAELQSQIESIYSSLS------------- 81 (272)
Q Consensus 19 l~vLP~DP~EQLdlarkIts~A~atRVs~LE~E~--~~LR~~L~--EKd~~i~~Lq~r~s~le~~l~------------- 81 (272)
-++||.+=|-|=-+-.-|..-.=..+|..--.|+ +..-.|+. |-|-.+.+-+.|+.+++..|.
T Consensus 28 ~sILPrNiFS~sYllyVi~qgtDvG~VA~KANeAGqgAYdAQVrNDEQDViL~dHe~rI~a~~a~l~dHE~RIt~~~~~i 107 (242)
T 3c9i_A 28 ASILPRNVFSKSYLLYVIAQGTDVGAIAGKANEAGQGAYDAQVKNDEQDVELADHEARIKQLRIDVDDHESRITANTKAI 107 (242)
T ss_dssp SSSSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhhHHHHHHhcccchHHHHhhhhhhhhhhhhHHHhcCcccceeeecchhhhhhhhcccccHHHHhhhhhhhh
Confidence 4689999888866655555332222222222221 12222222 344444444444444444444
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 024140 82 ----DKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (272)
Q Consensus 82 ----~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (272)
-||..++.++.-|.-+-..|..+|....-.++-|
T Consensus 108 a~~e~Rit~~e~~i~~l~~~v~~ld~~vt~~et~Isal 145 (242)
T 3c9i_A 108 TALNVRVTTAEGEIASLQTNVSALDGRVTTAENNISAL 145 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhheeecccccchhhhhhhhhhcccccccccchhhh
Confidence 3444555555555555444444444444444444
No 176
>1ydx_A Type I restriction enzyme specificity protein Mg4; type-I HSDS, DNA binding protein; 2.30A {Mycoplasma genitalium} SCOP: d.287.1.2 d.287.1.2
Probab=67.75 E-value=8.6 Score=34.29 Aligned_cols=40 Identities=8% Similarity=0.156 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 024140 88 QADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLK 127 (272)
Q Consensus 88 ~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq 127 (272)
.+||.+..+--+.+-..+..+++-+++|+.+|+.||+.+=
T Consensus 166 l~eQ~~I~~~l~~~d~~i~~~~~~~~~l~~~k~~l~~~~f 205 (406)
T 1ydx_A 166 KNEQHAIANTLSVFDERLENLASLIEINRKLRDEYAHKLF 205 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555555566666677777788889999999988763
No 177
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=67.49 E-value=29 Score=25.90 Aligned_cols=45 Identities=9% Similarity=0.100 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 024140 65 RIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (272)
Q Consensus 65 ~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDva 113 (272)
+...++..+..||.+|+ .+.++.+....|-..|.+.=-+|..+++
T Consensus 6 e~~~~~~~i~~lE~eL~----~~r~e~~~ql~EYq~LlniKl~Le~EIa 50 (74)
T 2xv5_A 6 ERDTSRRLLAEKEREMA----EMRARMQQQLDEYQELLDIKLALDMEIH 50 (74)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666655 5555555556666666665555655554
No 178
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=66.98 E-value=5 Score=37.43 Aligned_cols=40 Identities=10% Similarity=0.206 Sum_probs=28.6
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (272)
Q Consensus 41 ~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l 80 (272)
|-.+|..+|+++..|+..|.+.+..|.+|+.++..|+..+
T Consensus 9 lE~~Il~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l~~~~ 48 (319)
T 1fzc_C 9 YEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQC 48 (319)
T ss_dssp -CTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556777788888888878777777777777777666544
No 179
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=66.97 E-value=44 Score=27.09 Aligned_cols=78 Identities=17% Similarity=0.150 Sum_probs=36.2
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 27 FEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVR 106 (272)
Q Consensus 27 ~EQLdlarkIts~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvK 106 (272)
-+.+.-.++=.+..|..+....|.=|..|=.-- .-.++-.+|+..|+.++. .+.++..+..+|++.|-..|.
T Consensus 52 ~~~f~~~~~ela~dli~k~kqIe~LIdsLP~~~----~see~Q~~ri~~L~~E~~----~~~~el~~~v~e~e~ll~~v~ 123 (132)
T 1ykh_B 52 PEEFSNTIDELSTDIILKTRQINKLIDSLPGVD----VSAEEQLRKIDMLQKKLV----EVEDEKIEAIKKKEKLMRHVD 123 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTT----CCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC----CCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 345544444445555555555555555443221 111112234444444433 444444555555555555555
Q ss_pred HHhhhH
Q 024140 107 KLQRDV 112 (272)
Q Consensus 107 kL~rDv 112 (272)
.+-+++
T Consensus 124 ~~l~~i 129 (132)
T 1ykh_B 124 SMIEDF 129 (132)
T ss_dssp HHHHTT
T ss_pred HHHHHH
Confidence 555544
No 180
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=66.94 E-value=27 Score=24.46 Aligned_cols=33 Identities=18% Similarity=0.364 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 024140 62 KDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (272)
Q Consensus 62 Kd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDv 112 (272)
|.+++.+|+.+|.. |..||..|...+..|...|
T Consensus 20 Kk~~~~~LE~~v~~------------------L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 20 KKEYVKSLENRVAV------------------LENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHh
Confidence 44667777666543 4455555555555555443
No 181
>1ztm_A Fusion glycoprotein; fusion protein, 6-helix bundle,trimer, post-fusion, viral PR; HET: NAG; 3.05A {Human parainfluenza virus 3}
Probab=66.79 E-value=15 Score=36.32 Aligned_cols=77 Identities=18% Similarity=0.320 Sum_probs=44.2
Q ss_pred HHHH--HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 30 LDVA--RKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRK 107 (272)
Q Consensus 30 Ldla--rkIts~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKk 107 (272)
|.|| -+||+-+--.+..+.+++|.+||+.+..-.+.+.+|+.-+..+-.+++ +.|+. =|+.|.-++.+
T Consensus 102 LGVataaqiTAavAl~qa~~na~~I~~lk~si~~tn~Av~~l~~g~~~l~~av~-----~lQd~-----IN~~i~PaIn~ 171 (490)
T 1ztm_A 102 LGVATSAQITAAVALVEAKQARSDIEKLKEAIRDTNKAVQSVQSSIGNLIVAIK-----SVQDY-----VNKEIVPSIAR 171 (490)
T ss_dssp -----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH-----HHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH-----HHHHhhhhhhh
Confidence 6677 889987777889999999999999999999999999999988888775 22222 25667778888
Q ss_pred HhhhHHHHH
Q 024140 108 LQRDVSKLE 116 (272)
Q Consensus 108 L~rDvaKLE 116 (272)
|.++++-++
T Consensus 172 l~C~v~~~~ 180 (490)
T 1ztm_A 172 LGCEAAGLQ 180 (490)
T ss_dssp HHHHHHHHH
T ss_pred cccHhHHHH
Confidence 888887653
No 182
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=66.71 E-value=20 Score=25.12 Aligned_cols=8 Identities=25% Similarity=0.360 Sum_probs=3.1
Q ss_pred hhhHHHHH
Q 024140 46 SDLESEHS 53 (272)
Q Consensus 46 s~LE~E~~ 53 (272)
..||.++.
T Consensus 25 ~~LE~~v~ 32 (55)
T 1dh3_A 25 KSLENRVA 32 (55)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33343333
No 183
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=66.54 E-value=42 Score=27.98 Aligned_cols=27 Identities=26% Similarity=0.315 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 024140 86 QAQADKERLSKENEALTNTVRKLQRDV 112 (272)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDv 112 (272)
.+.++..+..+|++.|-..|..+-+++
T Consensus 103 ~~~~el~~~v~eae~ll~~v~~~l~~i 129 (151)
T 1yke_B 103 EVEDEKIEAIKKKEKLLRHVDSLIEDF 129 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444455555555555444444
No 184
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=66.54 E-value=64 Score=31.50 Aligned_cols=75 Identities=15% Similarity=0.151 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Q 024140 54 ALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQ--------ADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQS 125 (272)
Q Consensus 54 ~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~--------ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqS 125 (272)
.|-++..+-...+.+|+.+.+.+..++. +++..- ++...|..|-..|.+.+|.|..++..+|.=-..++.+
T Consensus 74 ~ld~~~r~~~~~~~~l~~~rn~~sk~i~-~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l~~ 152 (501)
T 1wle_A 74 STWQELRQLREQIRSLEEEKEAVTEAVR-ALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRALR 152 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333444555555555555443 232221 3566788888888888888888888887777777777
Q ss_pred cccc
Q 024140 126 LKDD 129 (272)
Q Consensus 126 Lq~d 129 (272)
|-+-
T Consensus 153 iPN~ 156 (501)
T 1wle_A 153 LPNQ 156 (501)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7554
No 185
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=65.81 E-value=9.1 Score=25.13 Aligned_cols=26 Identities=15% Similarity=0.078 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024140 84 LGQAQADKERLSKENEALTNTVRKLQ 109 (272)
Q Consensus 84 L~~a~ee~~kL~~E~~~La~TvKkL~ 109 (272)
+.+..++.++|..+|..|.+.|.+|.
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~ 27 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNT 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 44555666667777777776666554
No 186
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=65.63 E-value=39 Score=32.00 Aligned_cols=82 Identities=18% Similarity=0.254 Sum_probs=45.0
Q ss_pred hhhhhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH-----H-HHHHHHHHHHHhh
Q 024140 44 RVSDLESEHSALRSQLAEK-----DSRIAELQSQIESIYSSLS--DKLGQAQADKERLSK-----E-NEALTNTVRKLQR 110 (272)
Q Consensus 44 RVs~LE~E~~~LR~~L~EK-----d~~i~~Lq~r~s~le~~l~--~rL~~a~ee~~kL~~-----E-~~~La~TvKkL~r 110 (272)
|+..|+.+...|-.+|++- ......|-++++.|+..+. ..+....++...|.+ | +..+..-++.|..
T Consensus 4 ~l~~~~~r~~el~~~~~~p~~~~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~~~el~~D~e~~~~a~~e~~~l~~ 83 (354)
T 3d5a_X 4 KLDRLEEEYRELEALLSDPEVLKDKGRYQSLSRRYAEMGEVIGLIREYRKVLEDLEQAESLLDDPELKEMAKAEREALLA 83 (354)
T ss_dssp HHHHHTHHHHHHHHHTTSTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCchhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 5555666666666665532 2344445555555555444 444444444433322 1 2334556788888
Q ss_pred hHHHHHH-HHHHHHhh
Q 024140 111 DVSKLEV-FRKTLVQS 125 (272)
Q Consensus 111 DvaKLE~-FKk~LmqS 125 (272)
.+.+||. ++.-|+-+
T Consensus 84 ~~~~le~~l~~lLlp~ 99 (354)
T 3d5a_X 84 RKEALEKELERHLLPK 99 (354)
T ss_dssp HHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhcCCC
Confidence 8888885 66655544
No 187
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A
Probab=64.31 E-value=31 Score=30.35 Aligned_cols=90 Identities=19% Similarity=0.206 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHH--HHHHHHH-HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Q 024140 30 LDVARKITSIAISTRVSDLESEHSAL--RSQLAEK-DSRIAELQSQIESIYSSLS-----DKLGQAQADKERLSKENEAL 101 (272)
Q Consensus 30 LdlarkIts~A~atRVs~LE~E~~~L--R~~L~EK-d~~i~~Lq~r~s~le~~l~-----~rL~~a~ee~~kL~~E~~~L 101 (272)
|+-+-.-.-.|...|-..|..|+.+| -+.|++| ++.+...+..++..+..|+ .....+.+.-..+...-..+
T Consensus 98 i~~~W~~Le~ae~eRe~aL~~el~RlerLe~La~kf~rka~~~e~~L~~~~~~L~~d~~~l~~~~a~k~~e~ie~dL~~~ 177 (235)
T 2odv_A 98 VEKEWGKLHVAILEREKQLRSEFERLEALQRIVTKLQMEAGLAEEQLNQADALLQSDVRLLAAGKVPQRAGEVERDLDKA 177 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhhHHHHHHHH
Q 024140 102 TNTVRKLQRDVSKLEVFR 119 (272)
Q Consensus 102 a~TvKkL~rDvaKLE~FK 119 (272)
...|+.|..++..|+..+
T Consensus 178 e~~i~~l~~~a~~L~~~~ 195 (235)
T 2odv_A 178 DSMIRLLFNDVQTLKDGR 195 (235)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhCC
No 188
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=63.79 E-value=9.5 Score=24.65 Aligned_cols=25 Identities=36% Similarity=0.533 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHH
Q 024140 93 RLSKENEALTNTVRKLQRDVSKLEV 117 (272)
Q Consensus 93 kL~~E~~~La~TvKkL~rDvaKLE~ 117 (272)
.|.+|-..|..-|.+|+..|.+||.
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~ 27 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEE 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666666666664
No 189
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=63.63 E-value=76 Score=31.00 Aligned_cols=40 Identities=25% Similarity=0.403 Sum_probs=27.0
Q ss_pred HHHHHH----HHH-HHHHHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 024140 89 ADKERL----SKE-NEALTNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (272)
Q Consensus 89 ee~~kL----~~E-~~~La~TvKkL~rDvaKLE~FKk~LmqSLq~ 128 (272)
++...| .+| -..|...+|.|...+..+|.=-..++.+|-+
T Consensus 99 ~~~~~l~~~~~~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~iPN 143 (484)
T 3lss_A 99 EQVEQLCVLQLKQLSKDLSDQVAGLAKEAQQLEEERDKLMLNVGN 143 (484)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred hhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 445556 566 7888888888888888888877778877754
No 190
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=63.61 E-value=1.1e+02 Score=29.84 Aligned_cols=41 Identities=5% Similarity=0.092 Sum_probs=20.7
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 41 ~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~ 81 (272)
|...+..||..+..|-++-.+--+.|..|+..+...|.++.
T Consensus 98 V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~ 138 (464)
T 1m1j_B 98 VKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRK 138 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhccccccc
Confidence 44445555555555544444444445555555555555444
No 191
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=63.52 E-value=9.1 Score=25.28 Aligned_cols=27 Identities=11% Similarity=0.326 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024140 83 KLGQAQADKERLSKENEALTNTVRKLQ 109 (272)
Q Consensus 83 rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (272)
|+.+..++.+.|..+|..|.+.|.+|.
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk 28 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIK 28 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHH
Confidence 455666777777777777777665553
No 192
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=63.20 E-value=19 Score=25.20 Aligned_cols=29 Identities=21% Similarity=0.499 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 024140 89 ADKERLSKENEALTNTVRKLQRDVSKLEV 117 (272)
Q Consensus 89 ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (272)
.+|-+|.....+|...+-.|.-++++||+
T Consensus 17 kdnlqlerdeqnlekiianlrdeiarlen 45 (52)
T 3he5_B 17 KDNLQLERDEQNLEKIIANLRDEIARLEN 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhHhhHHHHHHHHHHHHHHHHH
Confidence 34445555555566666666666666654
No 193
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=62.36 E-value=96 Score=29.45 Aligned_cols=86 Identities=14% Similarity=0.180 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH---HH----
Q 024140 32 VARKITSIAISTRVSDLESEHSALRSQLAEK-----DSRIAELQSQIESIYSSLS--DKLGQAQADKERLS---KE---- 97 (272)
Q Consensus 32 larkIts~A~atRVs~LE~E~~~LR~~L~EK-----d~~i~~Lq~r~s~le~~l~--~rL~~a~ee~~kL~---~E---- 97 (272)
|..++....-.-++..++.++..|-.++++- ......|-++++.|+..+. ..++...++...|. +|
T Consensus 14 ~~~~~~~~~~~~~l~~~~~r~~el~~~~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~~~el~~~e~D~ 93 (365)
T 1gqe_A 14 LTERSDVLRGYLDYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGLLELAVEADDE 93 (365)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHHSGGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCH
Confidence 4444554544555666666777776666543 2344555555666655555 44444444443332 22
Q ss_pred --HHHHHHHHHHHhhhHHHHHH
Q 024140 98 --NEALTNTVRKLQRDVSKLEV 117 (272)
Q Consensus 98 --~~~La~TvKkL~rDvaKLE~ 117 (272)
+..+...++.|...+.+||.
T Consensus 94 e~~~~a~~e~~~l~~~l~~le~ 115 (365)
T 1gqe_A 94 ETFNEAVAELDALEEKLAQLEF 115 (365)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 13345667778888888774
No 194
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=62.20 E-value=65 Score=26.49 Aligned_cols=34 Identities=35% Similarity=0.585 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 66 IAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTN 103 (272)
Q Consensus 66 i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~ 103 (272)
+.+|+..|..|...|+ .+..+.++|-+++..|..
T Consensus 73 vqeLqgEI~~Lnq~Lq----~a~ae~erlr~~~~~~~~ 106 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQ----DASAEVERLRRENQVLSV 106 (121)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHhhchhhhh
Confidence 4444444444443333 555555555555544443
No 195
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=62.11 E-value=24 Score=34.14 Aligned_cols=34 Identities=15% Similarity=0.195 Sum_probs=21.7
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQI 73 (272)
Q Consensus 40 A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~ 73 (272)
-|...|..||..+..|-+.-.+-.+.|..|+.-+
T Consensus 35 ~V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~ 68 (411)
T 3ghg_C 35 KVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTY 68 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Confidence 4556677777777776666666666666665543
No 196
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Probab=62.09 E-value=66 Score=27.59 Aligned_cols=87 Identities=10% Similarity=0.222 Sum_probs=46.7
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhHHHH
Q 024140 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKER----LSKENEALTNTVRKLQRDVSKL 115 (272)
Q Consensus 40 A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~k----L~~E~~~La~TvKkL~rDvaKL 115 (272)
.+...|..+|.++..|+..|..=-.....+-+-...+..+. .++...+.+-.. +...-..+...+++...-+..+
T Consensus 18 ~FR~~l~~~E~~~~~l~~~l~kl~k~~~~~~~a~~~~~~a~-~~f~~~L~~~~~~~~~~~~~d~~~~~~L~~f~~~l~ei 96 (265)
T 2q12_A 18 QTRSLLGVFEEDATAISNYMNQLYQAMHRIYDAQNELSAAT-HLTSKLLKEYEKQRFPLGGDDEVMSSTLQQFSKVIDEL 96 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHGGGGSCCC-----CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhccCCCCcHHHHHHHHHHHHHHHHH
Confidence 35567888888888888877754444443333322222221 222333333111 1112233456677777777777
Q ss_pred HHHHHHHHhhcc
Q 024140 116 EVFRKTLVQSLK 127 (272)
Q Consensus 116 E~FKk~LmqSLq 127 (272)
++++..|++.++
T Consensus 97 ~~~~~~l~~~~~ 108 (265)
T 2q12_A 97 SSCHAVLSTQLA 108 (265)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777776654
No 197
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=61.99 E-value=40 Score=26.69 Aligned_cols=8 Identities=38% Similarity=0.534 Sum_probs=3.0
Q ss_pred hHHHHHHH
Q 024140 48 LESEHSAL 55 (272)
Q Consensus 48 LE~E~~~L 55 (272)
|+.|+..+
T Consensus 39 l~leldn~ 46 (119)
T 3ol1_A 39 VEVERDNL 46 (119)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 198
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=61.90 E-value=16 Score=24.36 Aligned_cols=13 Identities=23% Similarity=0.501 Sum_probs=5.8
Q ss_pred hhhhhHHHHHHHH
Q 024140 44 RVSDLESEHSALR 56 (272)
Q Consensus 44 RVs~LE~E~~~LR 56 (272)
||++||..+..|-
T Consensus 2 RMnQLE~KVEeLl 14 (36)
T 1kd8_B 2 KVKQLKAKVEELK 14 (36)
T ss_dssp CHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHH
Confidence 4444444444443
No 199
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=61.81 E-value=14 Score=27.46 Aligned_cols=33 Identities=30% Similarity=0.442 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 49 ESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 49 E~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~ 81 (272)
+.-|+.|...|.+||++|.+|+.++-.+..-+.
T Consensus 24 de~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl~ 56 (67)
T 1zxa_A 24 EERIKELEKRLSEKEEEIQELKRKLHKCQSVLP 56 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 445677777788888888888877766655443
No 200
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=61.61 E-value=39 Score=26.39 Aligned_cols=28 Identities=18% Similarity=0.107 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 024140 89 ADKERLSKENEALTNTVRKLQRDVSKLE 116 (272)
Q Consensus 89 ee~~kL~~E~~~La~TvKkL~rDvaKLE 116 (272)
.+.+......+.|...+.|++.-|+.||
T Consensus 62 ~~L~e~~~kid~L~~el~K~q~~L~e~e 89 (98)
T 2ke4_A 62 PQIAETLSNIERLKLEVQKYEAWLAEAE 89 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444455555555555555555554
No 201
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=61.22 E-value=22 Score=32.54 Aligned_cols=21 Identities=14% Similarity=0.177 Sum_probs=12.3
Q ss_pred HHHhhhhhHHHHHHHHHHHHH
Q 024140 41 ISTRVSDLESEHSALRSQLAE 61 (272)
Q Consensus 41 ~atRVs~LE~E~~~LR~~L~E 61 (272)
+...|..+|.++..|+..|..
T Consensus 42 FRa~l~~~E~~~~~l~~~l~k 62 (407)
T 4h8s_A 42 TRSLLSVFEEDAGTLTDYTNQ 62 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666655553
No 202
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A
Probab=60.95 E-value=12 Score=30.97 Aligned_cols=33 Identities=21% Similarity=0.345 Sum_probs=22.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIY 77 (272)
Q Consensus 45 Vs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le 77 (272)
+..|+..+..|...|..++..|.+|++++..+|
T Consensus 5 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (192)
T 1ca9_A 5 IEALSSKVQQLERSIGLKDLAMADLEQKVLEME 37 (192)
T ss_dssp THHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345566666667777777777777777666554
No 203
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=60.72 E-value=30 Score=29.43 Aligned_cols=35 Identities=23% Similarity=0.256 Sum_probs=28.7
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIY 77 (272)
Q Consensus 43 tRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le 77 (272)
.-+..||.|-.+++..+..|.+.+++|..+...+.
T Consensus 5 qe~~~Le~Ek~~~~~rI~~K~~~LqeL~~Q~vafk 39 (155)
T 2aze_A 5 QECQNLEVERQRRLERIKQKQSQLQELILQQIAFK 39 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999987766554
No 204
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=60.57 E-value=58 Score=25.39 Aligned_cols=40 Identities=13% Similarity=0.258 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 024140 89 ADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (272)
Q Consensus 89 ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq~ 128 (272)
+-..-|.+..+.|...+++|.+++.++..--+++...|++
T Consensus 88 eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~ 127 (133)
T 1fxk_C 88 DAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEE 127 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345667777888889999999999888888888777654
No 205
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=60.50 E-value=12 Score=28.22 Aligned_cols=19 Identities=37% Similarity=0.580 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024140 90 DKERLSKENEALTNTVRKL 108 (272)
Q Consensus 90 e~~kL~~E~~~La~TvKkL 108 (272)
+|..|..+...|..-+..|
T Consensus 51 eN~~L~~~v~~L~~E~~~L 69 (78)
T 1gu4_A 51 ENERLQKKVEQLSRELSTL 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444443333333
No 206
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=60.38 E-value=18 Score=25.36 Aligned_cols=28 Identities=21% Similarity=0.273 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 50 SEHSALRSQLAEKDSRIAELQSQIESIY 77 (272)
Q Consensus 50 ~E~~~LR~~L~EKd~~i~~Lq~r~s~le 77 (272)
.++..||..++|=...+.+|++++..|.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~ 46 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLK 46 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555444444444444444333
No 207
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=60.24 E-value=65 Score=26.83 Aligned_cols=56 Identities=13% Similarity=0.188 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 024140 49 ESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (272)
Q Consensus 49 E~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDv 112 (272)
+.=+++|...+.++...+..|++-....+. ...+..+..+|.....+.|+.+.++|
T Consensus 85 ~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~--------~l~e~e~~leeyK~Kl~rv~~vkkeL 140 (152)
T 4fla_A 85 AEYNGRLAAELEDRRQLARMLVEYTQNQKD--------VLSEKEKKLEEYKQKLARVTQVRKEL 140 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555555555433333332 22334444445555555555555444
No 208
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=60.06 E-value=43 Score=28.98 Aligned_cols=50 Identities=14% Similarity=0.218 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 52 HSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKL 108 (272)
Q Consensus 52 ~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL 108 (272)
+.-.|+-+....+.+..||+.+..||..|- ...+++..+.+| |.+|+.-|
T Consensus 123 aE~ireli~~AertV~kLqkeiD~LEDeL~----~eKek~k~i~~e---LDqTl~eL 172 (175)
T 3mud_A 123 AEVIRELICYCLDTTAKNEKSIDDLEEKVA----HAKEENLNMHQM---LDQTLLEL 172 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH---HHHHHHHh
Confidence 444555555666666666666666664443 555555555555 44444444
No 209
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=59.88 E-value=6.5 Score=29.74 Aligned_cols=32 Identities=22% Similarity=0.368 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 024140 82 DKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (272)
Q Consensus 82 ~rL~~a~ee~~kL~~E~~~La~TvKkL~rDva 113 (272)
+-|.++...+.+|.+.++-|-.-|++|.|+-.
T Consensus 36 ~LL~EsEatnarL~eq~~lLK~EIRRlERnqe 67 (71)
T 3bbp_D 36 GLLRETEATNAILMEQIKLLKSEIRRLERNQE 67 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHHHHhhHh
Confidence 66678888899999999999999999988643
No 210
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=59.46 E-value=36 Score=24.27 Aligned_cols=36 Identities=17% Similarity=0.195 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 62 KDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEAL 101 (272)
Q Consensus 62 Kd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~L 101 (272)
|-..+.+|+.++..|+..-. ....++..|.+|+..|
T Consensus 21 Kk~~~~~le~~~~~L~~~N~----~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 21 KRAEQEALTGECKELEKKNE----ALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 44445555555555544332 3344444455554444
No 211
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=59.31 E-value=5.3 Score=39.42 Aligned_cols=40 Identities=18% Similarity=0.299 Sum_probs=17.9
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 39 IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYS 78 (272)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~ 78 (272)
-.+..|+-.+|.|....+..|.+-.+.+..|+++...+|.
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~ 377 (575)
T 2i1j_A 338 QEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQA 377 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3455666777777777777766666666666555544433
No 212
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=59.30 E-value=69 Score=30.92 Aligned_cols=29 Identities=7% Similarity=0.100 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 53 SALRSQLAEKDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 53 ~~LR~~L~EKd~~i~~Lq~r~s~le~~l~ 81 (272)
..+.+.|.++...+.+.+..|.++-.+|.
T Consensus 91 ~~~~~~lk~~~~q~~dndn~~~e~s~eLe 119 (390)
T 1deq_A 91 KNIVELMRGDFAKANNNDNTFKQINEDLR 119 (390)
T ss_pred HHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 33344444444444444444444444443
No 213
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=59.26 E-value=68 Score=25.74 Aligned_cols=46 Identities=9% Similarity=0.182 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Q 024140 47 DLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKE 92 (272)
Q Consensus 47 ~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~ 92 (272)
.|-.|+...+.++.+=...+.+|+..+..||.+=. .||+.+.-=++
T Consensus 8 al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIEiLcQ 56 (106)
T 4e61_A 8 AIQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIEILVH 56 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555666666666655433 66666544433
No 214
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=58.96 E-value=15 Score=24.52 Aligned_cols=28 Identities=32% Similarity=0.372 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024140 83 KLGQAQADKERLSKENEALTNTVRKLQR 110 (272)
Q Consensus 83 rL~~a~ee~~kL~~E~~~La~TvKkL~r 110 (272)
|+.+..+..++|..+|..|.+.|.+|..
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ 29 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKK 29 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4556666777788888888887776654
No 215
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=58.92 E-value=38 Score=26.42 Aligned_cols=31 Identities=16% Similarity=0.254 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 024140 92 ERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (272)
Q Consensus 92 ~kL~~E~~~La~TvKkL~rDvaKLE~FKk~L 122 (272)
..+..+.+.....+.+|.-++-||+.+=-.|
T Consensus 58 ~s~~~~L~e~~~kid~L~~el~K~q~~L~e~ 88 (98)
T 2ke4_A 58 ASLEPQIAETLSNIERLKLEVQKYEAWLAEA 88 (98)
T ss_dssp GGSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666777777777776654333
No 216
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=58.86 E-value=14 Score=26.53 Aligned_cols=34 Identities=29% Similarity=0.451 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 024140 61 EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (272)
Q Consensus 61 EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDv 112 (272)
-|.+++.+|+.++..| ..||..|...|..|...|
T Consensus 27 RK~~~~~~Le~~v~~L------------------~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 27 RKLQRMKQLEDKVEEL------------------LSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHH
Confidence 4556666666555543 445555555555555444
No 217
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=58.60 E-value=11 Score=31.57 Aligned_cols=86 Identities=14% Similarity=0.208 Sum_probs=54.9
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 024140 39 IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS----DKLGQAQADKERLSKENEALTNTVRKLQRDVSK 114 (272)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~----~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaK 114 (272)
.++.+.++..+.|+.+|+..|.+=...-.+.+.+...++.+|- +-..+|+.....-..++..+...+.+|.+.+.-
T Consensus 35 ~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e 114 (135)
T 2e7s_A 35 NTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLRE 114 (135)
T ss_dssp HHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444666677888888888888666666667777777777776 555666666666667777777777777766654
Q ss_pred HHHHHHHHHhhccc
Q 024140 115 LEVFRKTLVQSLKD 128 (272)
Q Consensus 115 LE~FKk~LmqSLq~ 128 (272)
- ..|+.+||+
T Consensus 115 ~----e~ll~~lq~ 124 (135)
T 2e7s_A 115 K----DMLLDTLTL 124 (135)
T ss_dssp H----HHCC-----
T ss_pred H----HHHHHHHHH
Confidence 3 445555544
No 218
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=58.56 E-value=24 Score=26.47 Aligned_cols=49 Identities=16% Similarity=0.262 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 024140 64 SRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (272)
Q Consensus 64 ~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE 116 (272)
+.|.+|+.|++-.|..+. +..+...+.+++.+.|...++.|...+..++
T Consensus 14 ~Ri~~LE~klAfqE~tIe----eLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 14 ARLVELETRLSFQEQALT----ELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345555555555554443 6666677777777777777777776666555
No 219
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=58.46 E-value=62 Score=25.01 Aligned_cols=40 Identities=10% Similarity=0.119 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 024140 83 KLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (272)
Q Consensus 83 rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~L 122 (272)
.+.........|..|...+-..+....++...|=+.|-.|
T Consensus 38 e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~L 77 (95)
T 3mov_A 38 EKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLAL 77 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555566666666666666666666666666555
No 220
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A
Probab=58.44 E-value=42 Score=30.41 Aligned_cols=21 Identities=10% Similarity=0.246 Sum_probs=14.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHH
Q 024140 41 ISTRVSDLESEHSALRSQLAE 61 (272)
Q Consensus 41 ~atRVs~LE~E~~~LR~~L~E 61 (272)
+-..|..+|.++..|+..|.+
T Consensus 19 FR~~l~~~E~~~~~l~~~l~k 39 (385)
T 2q13_A 19 TRSLLGVFEEDATAISNYMNQ 39 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445666777777777776664
No 221
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=58.38 E-value=47 Score=28.22 Aligned_cols=28 Identities=21% Similarity=0.318 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHhhhHH-HHHHHHHHHHhh
Q 024140 98 NEALTNTVRKLQRDVS-KLEVFRKTLVQS 125 (272)
Q Consensus 98 ~~~La~TvKkL~rDva-KLE~FKk~LmqS 125 (272)
+..|.--+..|...|. ++|.||+.|.--
T Consensus 134 r~~L~Py~eelr~kl~~~~eeLr~~l~P~ 162 (191)
T 1nfn_A 134 RVRLASHLRKLRKRLLRDADDLQKRLAVY 162 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHhHHH
Confidence 3444444444444433 677777776433
No 222
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=58.22 E-value=46 Score=23.53 Aligned_cols=40 Identities=23% Similarity=0.237 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 61 EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNT 104 (272)
Q Consensus 61 EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~T 104 (272)
-|-..|.+|+.++..|+..-. ....++..|..|...|...
T Consensus 20 rKk~~~~~Le~~v~~L~~~n~----~L~~ei~~L~~e~~~Lk~~ 59 (63)
T 2wt7_A 20 RRRELTDTLQAETDQLEDEKS----ALQTEIANLLKEKEKLEFI 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 456677777777776665433 3333444455555544443
No 223
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=58.03 E-value=34 Score=31.90 Aligned_cols=10 Identities=10% Similarity=-0.024 Sum_probs=6.6
Q ss_pred ccccCCCCcc
Q 024140 244 LSSVHSSHSS 253 (272)
Q Consensus 244 ~~~~~ss~~S 253 (272)
-|||..=+.+
T Consensus 253 GWWy~~C~~s 262 (323)
T 1lwu_C 253 GWWMNRCHAG 262 (323)
T ss_dssp CBCCSSSCSE
T ss_pred CCccCCCCCC
Confidence 4688775555
No 224
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=57.79 E-value=55 Score=25.04 Aligned_cols=19 Identities=26% Similarity=0.184 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024140 61 EKDSRIAELQSQIESIYSS 79 (272)
Q Consensus 61 EKd~~i~~Lq~r~s~le~~ 79 (272)
|-=.....|.+++..++.+
T Consensus 31 eaL~EN~~Lh~~ie~~~eE 49 (79)
T 2zxx_A 31 EALKENEKLHKEIEQKDSE 49 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444433
No 225
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=57.67 E-value=54 Score=24.15 Aligned_cols=34 Identities=38% Similarity=0.628 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 024140 84 LGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (272)
Q Consensus 84 L~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (272)
|..++.++.+|-+-|++|.+-++.|++.+.+|-+
T Consensus 22 LaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQs 55 (63)
T 2w6a_A 22 LATSEAKVQQLMKVNSSLSDELRKLQREIHKLQA 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHh
Confidence 3455666666667777777777777766666643
No 226
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=57.65 E-value=61 Score=25.00 Aligned_cols=45 Identities=16% Similarity=0.263 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024140 65 RIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQ 109 (272)
Q Consensus 65 ~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (272)
.|.+|+-||+.+|.+=. -+|+..-++...|++.-..=..-++.|+
T Consensus 27 Ei~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~ 74 (81)
T 3qh9_A 27 ELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLH 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHH
Confidence 34455555555554422 5555555555555554433333444443
No 227
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=57.49 E-value=30 Score=26.98 Aligned_cols=36 Identities=17% Similarity=0.311 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 64 SRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTN 103 (272)
Q Consensus 64 ~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~ 103 (272)
..+.+|+..+..|..++. ...+++..+.+|++.+-.
T Consensus 48 ~q~~~LE~e~~~L~~e~~----~L~~e~~~~~~e~d~~k~ 83 (90)
T 2wt7_B 48 QQKHHLENEKTQLIQQVE----QLKQEVSRLARERDAYKV 83 (90)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 334444444444444333 334444444444444443
No 228
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=57.41 E-value=11 Score=27.53 Aligned_cols=12 Identities=50% Similarity=0.595 Sum_probs=5.7
Q ss_pred hhhhhHHHHHHH
Q 024140 44 RVSDLESEHSAL 55 (272)
Q Consensus 44 RVs~LE~E~~~L 55 (272)
||..||..+..|
T Consensus 3 rvkaleekvkal 14 (67)
T 1lq7_A 3 RVKALEEKVKAL 14 (67)
T ss_dssp SHHHHHHHHHHH
T ss_pred hhHHHHHHHHHH
Confidence 455555444443
No 229
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=57.09 E-value=28 Score=27.26 Aligned_cols=37 Identities=22% Similarity=0.315 Sum_probs=25.1
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIY 77 (272)
Q Consensus 41 ~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le 77 (272)
+..|+..|+..+..|..++.++.+.|..+++.+..+.
T Consensus 93 l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~ 129 (133)
T 1fxk_C 93 IKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELL 129 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567777777777777777777777777666655443
No 230
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=56.73 E-value=17 Score=28.73 Aligned_cols=34 Identities=15% Similarity=0.230 Sum_probs=22.3
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIE 74 (272)
Q Consensus 41 ~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s 74 (272)
+..|+..|..|+..|.++=.+=|++|..++..+.
T Consensus 4 ~~~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~ 37 (106)
T 2aze_B 4 MGGRLEGLTQDLRQLQESEQQLDHLMNICTTQLR 37 (106)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778888888777776666777766664433
No 231
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=56.57 E-value=28 Score=24.59 Aligned_cols=41 Identities=22% Similarity=0.293 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 024140 68 ELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (272)
Q Consensus 68 ~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDv 112 (272)
+++.++..||.+|+ .+.++.+....|-..|.+.=-+|..++
T Consensus 4 ~~q~~i~~le~el~----~~r~e~~~q~~eYq~LlniK~~Le~EI 44 (59)
T 1gk6_A 4 QLEDKVEELLSKNY----HLENEVARLKKLVGDLLNVKMALDIEI 44 (59)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 44555555555554 444445555555555555444444443
No 232
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=56.40 E-value=68 Score=24.86 Aligned_cols=36 Identities=6% Similarity=0.144 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 024140 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKT 121 (272)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~ 121 (272)
...+....+..+-+..-..+..-.+++.+||.+|..
T Consensus 85 ~q~~~l~~~~~~~e~~r~~l~~a~~~~k~~e~L~er 120 (150)
T 3ajw_A 85 QHRLQLTQWTQKVDLALKSWREKKQRLQAWQTLQDR 120 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555556666666666677777777777643
No 233
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=56.26 E-value=29 Score=26.77 Aligned_cols=54 Identities=22% Similarity=0.382 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhHHHHHH
Q 024140 60 AEKDSRIAELQSQIESIYSSLSDKLGQAQADKERL-SKENEALTNTVRKLQRDVSKLEV 117 (272)
Q Consensus 60 ~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL-~~E~~~La~TvKkL~rDvaKLE~ 117 (272)
.+|.+.|.+++..+..++.-|. +-.-|...+ ...|..+.+.|+.-.+||.+|+.
T Consensus 34 eerk~~i~~ie~~l~EA~ell~----qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk~ 88 (102)
T 1vcs_A 34 DEKKQMVANVEKQLEEARELLE----QMDLEVREIPPQSRGMYSNRMRSYKQEMGKLET 88 (102)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHH----HHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666655555554433 222222111 24577888888888888888754
No 234
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=56.03 E-value=79 Score=25.50 Aligned_cols=27 Identities=22% Similarity=0.170 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 52 HSALRSQLAEKDSRIAELQSQIESIYS 78 (272)
Q Consensus 52 ~~~LR~~L~EKd~~i~~Lq~r~s~le~ 78 (272)
|..|+.++..=+..+.+|+..++.+..
T Consensus 47 V~~L~~~~q~sE~~L~~Lqq~fsq~q~ 73 (112)
T 1x79_B 47 ISALVLRAQASEILLEELQQGLSQAKR 73 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333344333333333
No 235
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=55.61 E-value=24 Score=27.29 Aligned_cols=33 Identities=27% Similarity=0.385 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 024140 85 GQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (272)
Q Consensus 85 ~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (272)
..++++|.+|.++...|..-+..|...+..|..
T Consensus 42 ~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 42 YEALKENEKLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666666555555555555555533
No 236
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=55.57 E-value=64 Score=24.28 Aligned_cols=27 Identities=7% Similarity=0.139 Sum_probs=13.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 024140 44 RVSDLESEHSALRSQLAEKDSRIAELQ 70 (272)
Q Consensus 44 RVs~LE~E~~~LR~~L~EKd~~i~~Lq 70 (272)
+.+.|..++..|..++..+...+.+++
T Consensus 14 ~~~~l~~~~~~l~~q~~~l~~~~~e~~ 40 (117)
T 2zqm_A 14 QLESYQQQLQLVVQQKQKVQLELTEAK 40 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555554444444443
No 237
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=55.44 E-value=17 Score=30.04 Aligned_cols=25 Identities=28% Similarity=0.419 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHH
Q 024140 92 ERLSKENEALTNTVRKLQRDVSKLE 116 (272)
Q Consensus 92 ~kL~~E~~~La~TvKkL~rDvaKLE 116 (272)
..|++.++.|.+-|-+|..+|.+||
T Consensus 64 eeL~~ki~eL~~kvA~le~e~~~~e 88 (125)
T 2pms_C 64 EELSDKIDELDAEIAKLEDQLKAAE 88 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666654
No 238
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=55.20 E-value=18 Score=33.05 Aligned_cols=46 Identities=13% Similarity=0.267 Sum_probs=21.6
Q ss_pred HHHHHHHHhhhh---hHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q 024140 36 ITSIAISTRVSD---LESEHSALRSQLAE----KDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 36 Its~A~atRVs~---LE~E~~~LR~~L~E----Kd~~i~~Lq~r~s~le~~l~ 81 (272)
=+..+|..=+.. -|.+...+.+++.+ +...|+.|+++...|+.++.
T Consensus 150 y~~~~Y~~fl~~~d~~~~~~~e~~~~~~~~~n~~~~eie~L~~~~~~L~eEi~ 202 (315)
T 2ve7_A 150 YTIKCYESFMSGADSFDEMNAELQSKLKDLFNVDAFKLESLEAKNRALNEQIA 202 (315)
T ss_dssp HHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445444432 23333344444433 34556666666665555553
No 239
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=55.10 E-value=28 Score=26.15 Aligned_cols=38 Identities=29% Similarity=0.413 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH---------HHHHHH
Q 024140 85 GQAQADKERLSKENEALTNTVRKLQRDVSKLE---------VFRKTL 122 (272)
Q Consensus 85 ~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE---------~FKk~L 122 (272)
.....+...|.+|++.|.+.+|++..++.++. .|+++|
T Consensus 2 ~~L~k~i~~l~~E~eel~~klk~~~ee~~~~~eee~~~~~~~lek~L 48 (71)
T 1s1c_X 2 SMLTKDIEILRRENEELTEKMKKAEEEYKLEKEEEISNLKAAFEKNI 48 (71)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 240
>2olt_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 2.00A {Shewanella oneidensis} PDB: 2iiu_A*
Probab=54.75 E-value=93 Score=25.93 Aligned_cols=45 Identities=18% Similarity=0.303 Sum_probs=20.9
Q ss_pred HHhcCCCCchhhHHHHHHHHH---------------------HHHHHhhhhhHHHHHHHHHHHHHH
Q 024140 18 VLQVLPSDPFEQLDVARKITS---------------------IAISTRVSDLESEHSALRSQLAEK 62 (272)
Q Consensus 18 il~vLP~DP~EQLdlarkIts---------------------~A~atRVs~LE~E~~~LR~~L~EK 62 (272)
++.++|.+||+-|.=.-..+. ..+..+|..+|.++..|+.++.++
T Consensus 7 ~~~lf~~s~f~~l~~~a~~~~~~a~~L~~~~~~~~~~d~~~~~~~~~~i~~~E~~aD~l~~~I~~~ 72 (227)
T 2olt_A 7 ILGVFAKSPIKPLQEHMDKVYDCASLLVPFFEATITGNWDDAVQIRKQISLAEKQGDSLKREIRLT 72 (227)
T ss_dssp -------CTTHHHHHHHHHHHHHHHTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566788999887653332221 134456666666666666655443
No 241
>3m0a_A TNF receptor-associated factor 2; TRAF2: CIAP2 and the TRAF1: TRAF2: CIAP2 complexes, apoptosi coil, cytoplasm, metal-binding; 2.61A {Homo sapiens} PDB: 3m0d_A 3m06_A
Probab=54.36 E-value=53 Score=23.03 Aligned_cols=46 Identities=17% Similarity=0.252 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 33 ARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSS 79 (272)
Q Consensus 33 arkIts~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~ 79 (272)
...|.+. ...-|..+..+++.+.++...=...|+.|+.|+..|+..
T Consensus 17 ~e~iv~~-l~~~v~~~~~~le~~~~q~~~~~~~i~~Le~k~~~l~~~ 62 (66)
T 3m0a_A 17 FENIVCV-LNREVERVAMTAEACSRQHRLDQDKIEALSSKVQQLERS 62 (66)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HhhHHHHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHHHH
Confidence 3444443 444555555555555444444455555565555555543
No 242
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=54.23 E-value=58 Score=23.57 Aligned_cols=40 Identities=15% Similarity=0.374 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 024140 87 AQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSL 126 (272)
Q Consensus 87 a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSL 126 (272)
..++.+.|.+|+..|..++..=++-=-+||.+=|.++++.
T Consensus 15 LkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~~k~~ 54 (56)
T 2w6b_A 15 LKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLKNM 54 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344444555555555555544444455555555555543
No 243
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=54.22 E-value=1.2e+02 Score=27.24 Aligned_cols=61 Identities=20% Similarity=0.298 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 024140 52 HSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (272)
Q Consensus 52 ~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDv 112 (272)
|..+|..|.+-+..|..-++.+..+|..|- .++....-+...|...-...+..+-.|..|.
T Consensus 86 I~a~~a~l~dHE~RIt~~~~~ia~~e~Rit~~e~~i~~l~~~v~~ld~~vt~~et~Isal~~Dy 149 (242)
T 3c9i_A 86 IKQLRIDVDDHESRITANTKAITALNVRVTTAEGEIASLQTNVSALDGRVTTAENNISALQADY 149 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHB
T ss_pred hhhhhcccccHHHHhhhhhhhhhhhhheeecccccchhhhhhhhhhcccccccccchhhhhhhh
Confidence 444555555554444433333333333333 3334555666677777777777777777774
No 244
>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex, cytokine activation, complex (transcription factor/DNA), transcription/DNA complex; HET: DNA PTR; 2.25A {Mus musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A
Probab=54.17 E-value=46 Score=33.63 Aligned_cols=40 Identities=8% Similarity=0.190 Sum_probs=23.6
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 42 atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~ 81 (272)
..|-..+|..+..||..+.+.++.|..|++.-..++..++
T Consensus 12 ~~k~~ei~~~v~~lr~~~q~~e~~ik~Le~~Qe~f~~~yk 51 (596)
T 1bg1_A 12 TEKQQMLEQHLQDVRKRVQDLEQKMKVVENLQDDFDFNYK 51 (596)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3455566666666666666666666666555555444443
No 245
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=53.84 E-value=21 Score=34.01 Aligned_cols=35 Identities=20% Similarity=0.393 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 024140 83 KLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (272)
Q Consensus 83 rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (272)
||+....+..-|.-|++-|.+..+.|++++.+++.
T Consensus 50 ~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~e 84 (428)
T 4b4t_K 50 KLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQE 84 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555555566666666666655543
No 246
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=53.78 E-value=41 Score=33.48 Aligned_cols=22 Identities=32% Similarity=0.312 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024140 59 LAEKDSRIAELQSQIESIYSSL 80 (272)
Q Consensus 59 L~EKd~~i~~Lq~r~s~le~~l 80 (272)
|.+|+..|++=+.|...+|.+.
T Consensus 482 l~~~~k~~~~~~~~~e~~~~~~ 503 (592)
T 1f5n_A 482 LTEKEKEIEVERVKAESAQASA 503 (592)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555554443
No 247
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=53.65 E-value=27 Score=23.27 Aligned_cols=12 Identities=33% Similarity=0.504 Sum_probs=6.5
Q ss_pred hhhhhHHHHHHH
Q 024140 44 RVSDLESEHSAL 55 (272)
Q Consensus 44 RVs~LE~E~~~L 55 (272)
||++||..+..|
T Consensus 2 RMnQLE~kVEeL 13 (36)
T 1kd8_A 2 EVKQLEAEVEEI 13 (36)
T ss_dssp CCHHHHHHHHHH
T ss_pred chhHHHHHHHHH
Confidence 555666555444
No 248
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=53.57 E-value=63 Score=28.87 Aligned_cols=50 Identities=20% Similarity=0.280 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhHHHHHHHH
Q 024140 66 IAELQSQIESIYSSLSDKLGQAQADKERLSKE-NEALTNTVRKLQRDVSKLEVFR 119 (272)
Q Consensus 66 i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E-~~~La~TvKkL~rDvaKLE~FK 119 (272)
+.+|++|+..++..+. ...++..++.++ ...|..--..|....++.+++.
T Consensus 228 l~~l~~~i~~l~~~l~----~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 278 (357)
T 3rrk_A 228 AARMKERARLAPEELV----GIREEVARLSRESGEALIALWTRAKDEVARYKAVA 278 (357)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444443333 334444444444 4455555555555566666554
No 249
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=53.56 E-value=18 Score=23.73 Aligned_cols=13 Identities=31% Similarity=0.468 Sum_probs=5.3
Q ss_pred hhhhhHHHHHHHH
Q 024140 44 RVSDLESEHSALR 56 (272)
Q Consensus 44 RVs~LE~E~~~LR 56 (272)
||++||..++.|.
T Consensus 1 RM~QLE~kVEeLl 13 (33)
T 3m48_A 1 RMAQLEAKVEELL 13 (33)
T ss_dssp --CHHHHHHHHHH
T ss_pred CccHHHHHHHHHH
Confidence 4455555444443
No 250
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=53.50 E-value=89 Score=25.36 Aligned_cols=38 Identities=13% Similarity=0.133 Sum_probs=17.2
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIY 77 (272)
Q Consensus 40 A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le 77 (272)
.+...-..|..+...|...+.+......+|+.++..|+
T Consensus 26 ~l~~eN~~Lk~e~e~l~~~~~~~~~~~~eL~~~~~~Le 63 (155)
T 2oto_A 26 RLRHENKDLKARLENAMEVAGRDFKRAEELEKAKQALE 63 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34444444555555554444443344444444444443
No 251
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=53.46 E-value=60 Score=30.84 Aligned_cols=31 Identities=29% Similarity=0.563 Sum_probs=13.6
Q ss_pred HhhhhhHHHHHHHHHHH--HHHHHHHHHHHHHH
Q 024140 43 TRVSDLESEHSALRSQL--AEKDSRIAELQSQI 73 (272)
Q Consensus 43 tRVs~LE~E~~~LR~~L--~EKd~~i~~Lq~r~ 73 (272)
.++..|...+..|+..| ..+.+.+.+|++++
T Consensus 9 ~~~~~~~~~~~~~~~~~~l~~~~~r~~el~~~~ 41 (365)
T 1gqe_A 9 NRIQDLTERSDVLRGYLDYDAKKERLEEVNAEL 41 (365)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 44444544444444432 23444444444433
No 252
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=53.40 E-value=1.1e+02 Score=26.57 Aligned_cols=73 Identities=15% Similarity=0.242 Sum_probs=44.5
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 024140 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLG-QAQADKERLSKENEALTNTVRKLQRDV 112 (272)
Q Consensus 40 A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~-~a~ee~~kL~~E~~~La~TvKkL~rDv 112 (272)
++..++..|..|..+|.....+=...+.++-+--..+|.+|-.|.. ..++.+.|+.+-.+.|.+.++.+..+.
T Consensus 136 ~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~L~~KF~~lLNeKK~KIR~lq~~Ll~~~~~~~~~~ 209 (213)
T 1ik9_A 136 ENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALETDLYKRFILVLNEKKTKIRSLHNKLLNAAQEREKDI 209 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhh
Confidence 4455555555555555555554445555555555566666664443 445666777777778888888877664
No 253
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=53.25 E-value=72 Score=24.23 Aligned_cols=43 Identities=19% Similarity=0.169 Sum_probs=31.8
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 37 TSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSS 79 (272)
Q Consensus 37 ts~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~ 79 (272)
+-.++..-.-.-|.||++|+..++=|..-.+-|.+.+-+|.-+
T Consensus 19 ~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIE 61 (75)
T 3a7o_A 19 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIE 61 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHH
Confidence 4556666666778899999998888887777777777665543
No 254
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=52.55 E-value=1.9e+02 Score=28.78 Aligned_cols=53 Identities=17% Similarity=0.164 Sum_probs=31.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKE 97 (272)
Q Consensus 45 Vs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E 97 (272)
...-|.-++.++.+=++..++.+.+++|-......+..+|.+-.++.++-.++
T Consensus 29 ka~Ye~~~ae~~a~n~~i~aeNeaikkrNa~aka~Ye~~l~kY~~dlakY~~~ 81 (497)
T 3iox_A 29 KAAYEAAVAANNAANAALTAENTAIKKRNADAKADYEAKLAKYQADLAKYQKD 81 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555666666666666677777776666666665555555555554444
No 255
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=51.91 E-value=64 Score=25.95 Aligned_cols=42 Identities=14% Similarity=0.169 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 024140 87 AQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (272)
Q Consensus 87 a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq~ 128 (272)
..+-..-|.+..+.|...+++|..++.+++.--+++...|++
T Consensus 96 ~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~ 137 (151)
T 2zdi_C 96 IDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQE 137 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445666677777778888888887777766666555543
No 256
>3kpe_A Fusion glycoprotein F0; peptide-small-molecule complex, alpha helix, coiled-coil, EN protein, fusion protein; HET: TM3 PG4; 1.47A {Human respiratory syncytial virus} PDB: 1g2c_A
Probab=51.78 E-value=61 Score=22.94 Aligned_cols=35 Identities=20% Similarity=0.339 Sum_probs=28.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 47 DLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 47 ~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~ 81 (272)
.||+||..|+..+.+=.+.+.+|-.=+..|-.+++
T Consensus 1 ~le~~I~~Lk~ai~~TNeAV~~L~~g~~~la~Av~ 35 (51)
T 3kpe_A 1 HLEGEVNKIKSALLSTNKAVVSLSNGVSVLTSKVL 35 (51)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 38999999999998888888888777776666664
No 257
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=51.74 E-value=86 Score=29.47 Aligned_cols=70 Identities=14% Similarity=0.233 Sum_probs=36.1
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q 024140 38 SIAISTRVSDLESEHSALRSQLA----EKDSRIAELQSQIESIYSSLSDKLGQ--AQADKERLSKENEALTNTVRKL 108 (272)
Q Consensus 38 s~A~atRVs~LE~E~~~LR~~L~----EKd~~i~~Lq~r~s~le~~l~~rL~~--a~ee~~kL~~E~~~La~TvKkL 108 (272)
..+++.++..+-..+..+|..+. ..-..|..|=++|..|..++. +... .-+.-+.|..+||.|...+-+|
T Consensus 73 a~~La~~~n~~~~~L~~~~~~~n~~i~~~V~~iN~l~~qIa~LN~qI~-~~~~~~~g~~~ndLlDqRD~ll~eLS~~ 148 (463)
T 2d4y_A 73 AEGLVNQFKTTDQYLRDQDKQVNIAIGSSVAQINNYAKQIANLNDQIS-RMTGVGAGASPNDLLDQRDQLVSELNKI 148 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHC--------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhccCCCCCchHhHHHHHHHHHHHHhh
Confidence 56677777777777666666554 233344445555555555543 1111 1234456777777666555443
No 258
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=51.72 E-value=19 Score=34.04 Aligned_cols=63 Identities=16% Similarity=0.269 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 024140 66 IAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (272)
Q Consensus 66 i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq~d 129 (272)
+.+|+.+.+.+-.++ ++++..-++...|..|-..|.+.+|.|..++..+|.=-..++.+|-+-
T Consensus 46 ~~~l~~~~n~~sk~i-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~ 108 (425)
T 2dq3_A 46 LEALRSERNKLSKEI-GKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEELKNTLLWIPNL 108 (425)
T ss_dssp HHHHHHHHHHHHHHT-TGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHH-HHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 334444444444333 233333345567778888888888888888888888777888877654
No 259
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=51.71 E-value=77 Score=24.09 Aligned_cols=19 Identities=5% Similarity=0.149 Sum_probs=10.1
Q ss_pred HHHhhhhhHHHHHHHHHHH
Q 024140 41 ISTRVSDLESEHSALRSQL 59 (272)
Q Consensus 41 ~atRVs~LE~E~~~LR~~L 59 (272)
|-..|..+..++..|+..+
T Consensus 10 F~~~v~~I~~~i~~i~~~v 28 (127)
T 1ez3_A 10 FFEQVEEIRGFIDKIAENV 28 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555444
No 260
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=51.63 E-value=60 Score=22.83 Aligned_cols=41 Identities=15% Similarity=0.249 Sum_probs=26.4
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 41 ~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~ 81 (272)
+-.+++.||+++..+|+.++.--+...+|=+=-..||.++.
T Consensus 5 ~q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIa 45 (59)
T 1gk6_A 5 LEDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIA 45 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 34567888888888888877665555555444444555443
No 261
>3ter_A Mammalian stromal interaction molecule-1; dimer, metal binding protein; 2.55A {Caenorhabditis elegans}
Probab=51.63 E-value=26 Score=29.28 Aligned_cols=29 Identities=14% Similarity=0.243 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024140 82 DKLGQAQADKERLSKENEALTNTVRKLQR 110 (272)
Q Consensus 82 ~rL~~a~ee~~kL~~E~~~La~TvKkL~r 110 (272)
-+|..|.+.++||.+-|.++-.+++-.+-
T Consensus 59 kql~~Ake~~eKlkKKrsSv~gs~~~aHs 87 (136)
T 3ter_A 59 KEMKEAIEMVDRLQKKQGSVLSSLKLATG 87 (136)
T ss_dssp HHHHHHHHHHHHHHHC------CCCCCCS
T ss_pred HHHHHHHHHHHHHHHhhhchheeeeeecC
Confidence 56678888888888888888777765544
No 262
>4adz_A CSOR; transcription, copper sensor; 1.70A {Streptomyces lividans}
Probab=51.50 E-value=91 Score=25.99 Aligned_cols=43 Identities=16% Similarity=0.244 Sum_probs=33.1
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 38 SIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 38 s~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~ 81 (272)
...+..|+.+.|.+++.+..-+.| ++--.++=.|++....+|.
T Consensus 51 Kk~ll~RLkRIeGQvrGI~rMIEe-dr~C~DIL~QlaAVrsAL~ 93 (136)
T 4adz_A 51 KAEHLKRLRRIEGQIRGLQRMVDE-DVYCIDILTQVSASTKALQ 93 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHH
Confidence 567889999999999999888764 5555555567777777776
No 263
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=51.26 E-value=73 Score=23.68 Aligned_cols=34 Identities=24% Similarity=0.381 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 48 LESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 48 LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~ 81 (272)
|+.|...++.++.+.+..+.+++..+...-.+++
T Consensus 3 l~~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq 36 (74)
T 2xv5_A 3 SARERDTSRRLLAEKEREMAEMRARMQQQLDEYQ 36 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555544443333333
No 264
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=51.20 E-value=79 Score=24.05 Aligned_cols=40 Identities=23% Similarity=0.381 Sum_probs=19.2
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 42 atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~ 81 (272)
..|+..+|.+-..|..++..=...+.+=+.+-..+..+|.
T Consensus 12 ~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk 51 (79)
T 3cvf_A 12 QQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVG 51 (79)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555444444444444444444443
No 265
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=51.15 E-value=20 Score=23.07 Aligned_cols=21 Identities=10% Similarity=0.278 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024140 59 LAEKDSRIAELQSQIESIYSS 79 (272)
Q Consensus 59 L~EKd~~i~~Lq~r~s~le~~ 79 (272)
++.-+.+.+.|+..+..||.+
T Consensus 10 vaqaeaenyqleqevaqlehe 30 (33)
T 1fmh_A 10 VAQAEAENYQLEQEVAQLEHE 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHh
Confidence 344455556666555555543
No 266
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=50.83 E-value=83 Score=24.20 Aligned_cols=78 Identities=22% Similarity=0.211 Sum_probs=43.8
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH---HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 024140 39 IAISTRVSDLESEHSALRSQLAEKDSRIAEL---QS---QIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (272)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~L~EKd~~i~~L---q~---r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDv 112 (272)
++-..-....|.|...|...+..|-..|..+ ++ .+..+|. .|.+|.+=..++.-|..++-.++|. .=.
T Consensus 11 ~~mSelFe~YE~df~~l~~~i~~kl~~i~~~~~~e~rk~~i~~ie~----~ldEA~eLl~qMelE~r~~p~s~R~--~~~ 84 (102)
T 2qyw_A 11 AASSEHFEKLHEIFRGLLEDLQGVPERLLGTAGTEEKKKLVRDFDE----KQQEANETLAEMEEELRYAPLTFRN--PMM 84 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHTSCHHHHH--HHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhCCHHHHH--HHH
Confidence 3345566666777666666666665555333 22 2233333 3336666666666676666655554 334
Q ss_pred HHHHHHHHHH
Q 024140 113 SKLEVFRKTL 122 (272)
Q Consensus 113 aKLE~FKk~L 122 (272)
+||..+|+.|
T Consensus 85 ~klr~Yk~dL 94 (102)
T 2qyw_A 85 SKLRNYRKDL 94 (102)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5666666665
No 267
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=50.65 E-value=87 Score=24.67 Aligned_cols=17 Identities=24% Similarity=0.429 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024140 63 DSRIAELQSQIESIYSS 79 (272)
Q Consensus 63 d~~i~~Lq~r~s~le~~ 79 (272)
+.+|.+|++++..||..
T Consensus 53 ~~EI~~L~~eI~~LE~i 69 (96)
T 1t3j_A 53 EEEIARLSKEIDQLEKM 69 (96)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555565555555543
No 268
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=50.56 E-value=26 Score=24.58 Aligned_cols=27 Identities=19% Similarity=0.210 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 024140 89 ADKERLSKENEALTNTVRKLQRDVSKL 115 (272)
Q Consensus 89 ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (272)
.+..+|..|++.|...+..|...++.|
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el 45 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKL 45 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666665555444
No 269
>1bf5_A Signal transducer and activator of transcription 1-alpha/beta; complex (SH2 domain/DNA), SH2 domain, transcription factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP: a.47.1.1 b.2.5.5 d.93.1.1
Probab=50.54 E-value=91 Score=31.39 Aligned_cols=33 Identities=24% Similarity=0.287 Sum_probs=17.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQ 72 (272)
Q Consensus 40 A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r 72 (272)
.+..+|..+|.++..|.+.-.+=|=..++++.+
T Consensus 13 ~l~~~~q~~e~~~k~Le~~Qe~f~~~y~~~~~~ 45 (575)
T 1bf5_A 13 NVKDKVMCIEHEIKSLEDLQDEYDFKCKTLQNR 45 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Confidence 445555666666666655555555455555433
No 270
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=50.47 E-value=50 Score=26.27 Aligned_cols=28 Identities=21% Similarity=0.255 Sum_probs=20.0
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 024140 39 IAISTRVSDLESEHSALRSQLAEKDSRI 66 (272)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~L~EKd~~i 66 (272)
.|+..|..+.|.|+..||.+++|....+
T Consensus 7 ~~~~~~~~~~e~e~~~l~~~~~el~~~l 34 (125)
T 1joc_A 7 RALLERCLKGEGEIEKLQTKVLELQRKL 34 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4666777888888888888776655444
No 271
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=49.99 E-value=74 Score=23.43 Aligned_cols=47 Identities=23% Similarity=0.311 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 52 HSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALT 102 (272)
Q Consensus 52 ~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La 102 (272)
--.++..|+--++.|..|=+=-+.|-.+| +....+..+|+.||..|.
T Consensus 15 ylevK~ALaaSeAkiQQLmkVN~~ls~El----r~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 15 YLELKKALATSEAKVQQLMKVNSSLSDEL----RKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHhHhhhHHH----HHHHHHHHHHHhhhhhhc
Confidence 34556666666666666643333333333 355556666666666653
No 272
>4dac_A Computationally designed crystal forming protein; alpha-helix, three-helix bundle, coiled-coil protein, DE NOV computational protein design; 2.10A {Synthetic}
Probab=49.98 E-value=12 Score=23.39 Aligned_cols=18 Identities=39% Similarity=0.649 Sum_probs=13.6
Q ss_pred HHHHHHHHHhhhHHHHHH
Q 024140 100 ALTNTVRKLQRDVSKLEV 117 (272)
Q Consensus 100 ~La~TvKkL~rDvaKLE~ 117 (272)
.|-..||+|.++|-|||.
T Consensus 5 kldanvkrlekevgkleg 22 (28)
T 4dac_A 5 KLDANVKRLEKEVGKLEG 22 (28)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eccccHHHHHHHHhhhhh
Confidence 356778888888888874
No 273
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=49.73 E-value=35 Score=28.18 Aligned_cols=51 Identities=25% Similarity=0.419 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhHHHH
Q 024140 65 RIAELQSQIESIYSSLS--------DKLGQAQADKERLSKENEALTN-TVRKLQRDVSKL 115 (272)
Q Consensus 65 ~i~~Lq~r~s~le~~l~--------~rL~~a~ee~~kL~~E~~~La~-TvKkL~rDvaKL 115 (272)
+|..|.+|+..+...+. ..+.+..+|+++|.+|..+|-+ +..+|+.+-.+|
T Consensus 11 Eiq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~q~~~lske~~~l 70 (123)
T 2lf0_A 11 EIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLREVHSQKLSKEAQKL 70 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 34555555555554444 5556666666777766666643 334444444443
No 274
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.66 E-value=96 Score=24.63 Aligned_cols=51 Identities=14% Similarity=0.231 Sum_probs=32.5
Q ss_pred HHHHHHHHH--HHHHHhhhhhHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 30 LDVARKITS--IAISTRVSDLESEH---------SALRSQLAEKDSRIAELQSQIESIYSSL 80 (272)
Q Consensus 30 LdlarkIts--~A~atRVs~LE~E~---------~~LR~~L~EKd~~i~~Lq~r~s~le~~l 80 (272)
-+|...|.+ .-|-+-|+.|+..+ ..||.+|.+..+.+.+|=+..+..=..|
T Consensus 13 ~~l~~~is~~I~~In~~vs~l~r~v~~LGT~kDt~~LR~kl~~~~~~t~~l~k~ts~~lk~L 74 (130)
T 2dnx_A 13 SSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQHSTNQLAKETNELLKEL 74 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446666653 34556688888876 6678888777777776665555443333
No 275
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=49.45 E-value=73 Score=26.03 Aligned_cols=20 Identities=5% Similarity=0.197 Sum_probs=10.2
Q ss_pred HHHHhhhhhHHHHHHHHHHH
Q 024140 40 AISTRVSDLESEHSALRSQL 59 (272)
Q Consensus 40 A~atRVs~LE~E~~~LR~~L 59 (272)
.|-..|..+..++..|+..+
T Consensus 40 ~F~~~v~~I~~~i~~i~~~v 59 (180)
T 1s94_A 40 EFFEQVEEIRAMIDKISDNV 59 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555554443
No 276
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=49.42 E-value=61 Score=31.06 Aligned_cols=31 Identities=16% Similarity=0.224 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 024140 99 EALTNTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (272)
Q Consensus 99 ~~La~TvKkL~rDvaKLE~FKk~LmqSLq~d 129 (272)
..|...++.|..++..||.--+.+-..|++-
T Consensus 72 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (455)
T 2dq0_A 72 DELLAKSREIVKRIGELENEVEELKKKIDYY 102 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666665555444
No 277
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=49.35 E-value=31 Score=26.72 Aligned_cols=32 Identities=25% Similarity=0.401 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 024140 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (272)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (272)
.++++|.+|.++...+.+-+-.|......|..
T Consensus 35 eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~e 66 (83)
T 1wlq_A 35 EALKENEKLHKEIEQKDSEIARLRKENKDLAE 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666555555555444444433
No 278
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=48.90 E-value=71 Score=25.10 Aligned_cols=19 Identities=16% Similarity=0.102 Sum_probs=10.2
Q ss_pred HHHhhhhhHHHHHHHHHHH
Q 024140 41 ISTRVSDLESEHSALRSQL 59 (272)
Q Consensus 41 ~atRVs~LE~E~~~LR~~L 59 (272)
.+.+..+|-.|+..||.++
T Consensus 21 ~a~~~~~lk~E~~~lk~E~ 39 (93)
T 3sjb_C 21 LSKKYLAKVKERHELKEFN 39 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555544
No 279
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=48.60 E-value=29 Score=27.66 Aligned_cols=36 Identities=19% Similarity=0.327 Sum_probs=20.5
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESI 76 (272)
Q Consensus 41 ~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~l 76 (272)
|-.|+-.||.|-=.|-.++..++-.|.+|..||..|
T Consensus 54 Lh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (107)
T 1ytz_T 54 LWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRIDQA 89 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHh
Confidence 344555566665555555555555666665555544
No 280
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=48.47 E-value=66 Score=29.57 Aligned_cols=39 Identities=15% Similarity=0.388 Sum_probs=34.7
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 43 tRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~ 81 (272)
.|+..|..++..++.++...|+.|+++-.++-.||.+++
T Consensus 216 ~k~~~l~n~I~~V~n~~~q~~~~~~~~~~~~~~~~~~~~ 254 (268)
T 2yo3_A 216 QKMGEMNSKIKGVENKMKQIEDKIEEILSKIYHIENEIA 254 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999888888888876
No 281
>1y1u_A Signal transducer and activator of transcription; STAT, DNA-binding, SH2 domain, transcription REGU signaling protein; 3.21A {Mus musculus}
Probab=48.37 E-value=1.2e+02 Score=30.53 Aligned_cols=45 Identities=16% Similarity=0.180 Sum_probs=26.7
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 37 TSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 37 ts~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~ 81 (272)
.+.++..+-..+|..+..||....+.++.+..||+.-+.+.-.++
T Consensus 6 ~~~~~~~~~~eI~~~v~~l~~~~q~~e~~~k~Le~~Qe~F~~~y~ 50 (585)
T 1y1u_A 6 LVDAMSQKHLQINQRFEELRLITQDTENELKKLQQTQEYFIIQYQ 50 (585)
T ss_dssp -----CCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 344455566667777777777777777777777666665555544
No 282
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=48.35 E-value=1.3e+02 Score=25.89 Aligned_cols=73 Identities=14% Similarity=0.191 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH--HHHHHHHHHHh
Q 024140 52 HSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVS--KLEVFRKTLVQ 124 (272)
Q Consensus 52 ~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDva--KLE~FKk~Lmq 124 (272)
|.-||.++++.+..+++..++|......|. .-+..+..+..|+..-+..-....+++.--.. -+|-|+..+.+
T Consensus 80 I~llrErea~lEqkVaeq~e~Ve~e~q~Le~ar~el~qArke~eKfelHrqiwqaE~kre~E~qEElEqEEf~s~~~~ 157 (169)
T 3k29_A 80 IKVVAIQLSEEEEKVNKQKENVLAASKELERAEVELTKRRKEEEKTRLHKEEWMKEALKEEARQEEKEQDEMGQLLHQ 157 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 455667777666666666666666666665 44555666666665555544555555554444 34556554443
No 283
>3okg_A Restriction endonuclease S subunits; coiled-coil, type I methyltransferase, DNA binding, DNA BIND protein; 1.95A {Thermoanaerobacter tengcongensis}
Probab=48.15 E-value=30 Score=30.35 Aligned_cols=16 Identities=6% Similarity=0.262 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHhhc
Q 024140 111 DVSKLEVFRKTLVQSL 126 (272)
Q Consensus 111 DvaKLE~FKk~LmqSL 126 (272)
.+.+|+.+|+.||+.+
T Consensus 392 ~~~~L~~lk~~LL~k~ 407 (412)
T 3okg_A 392 TEAELKRLEQAILDKA 407 (412)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6788888888888764
No 284
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=48.03 E-value=45 Score=25.50 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 024140 86 QAQADKERLSKENEALTNTVRKLQ 109 (272)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~ 109 (272)
.++++|.+|-++...+..-+.+|.
T Consensus 31 eaL~EN~~Lh~~ie~~~eEi~~Lk 54 (79)
T 2zxx_A 31 EALKENEKLHKEIEQKDSEIARLR 54 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555444444444433333
No 285
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=47.80 E-value=28 Score=22.78 Aligned_cols=12 Identities=25% Similarity=0.324 Sum_probs=5.8
Q ss_pred hhhhhHHHHHHH
Q 024140 44 RVSDLESEHSAL 55 (272)
Q Consensus 44 RVs~LE~E~~~L 55 (272)
||++||..+..|
T Consensus 1 RMnQLEdKVEel 12 (33)
T 2wq1_A 1 RMKQLEDKIEEN 12 (33)
T ss_dssp CHHHHHHHHHHH
T ss_pred CchHHHHHHHHH
Confidence 445555544444
No 286
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=47.73 E-value=8 Score=26.76 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=14.5
Q ss_pred HHHHhhhhhHHHHHHHHHHHHH
Q 024140 40 AISTRVSDLESEHSALRSQLAE 61 (272)
Q Consensus 40 A~atRVs~LE~E~~~LR~~L~E 61 (272)
.+-.||..||.++..|+..|+|
T Consensus 48 ~L~~ri~~Le~~l~~l~~~l~~ 69 (70)
T 1zme_C 48 QLQKDLNDKTEENNRLKALLLE 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4566777777777777666554
No 287
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=47.69 E-value=25 Score=24.96 Aligned_cols=27 Identities=30% Similarity=0.567 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 024140 91 KERLSKENEALTNTVRKLQRDVSKLEV 117 (272)
Q Consensus 91 ~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (272)
.+.|...|.+|..-+-.|.+|++.||.
T Consensus 26 varlendnanlekdianlekdianler 52 (56)
T 3he4_A 26 VARLENDNANLEKDIANLEKDIANLER 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 356777777777777777777777764
No 288
>1pl5_A Regulatory protein SIR4; parallel coiled coil homodimer, DNA binding protein/transcription complex; 2.50A {Saccharomyces cerevisiae} SCOP: h.1.23.1
Probab=47.63 E-value=23 Score=29.17 Aligned_cols=43 Identities=35% Similarity=0.512 Sum_probs=23.7
Q ss_pred hhhHHHHHHHHH------HHHHHhhhhhHHH-------HHHHHHHHHHHHHHHHHH
Q 024140 27 FEQLDVARKITS------IAISTRVSDLESE-------HSALRSQLAEKDSRIAEL 69 (272)
Q Consensus 27 ~EQLdlarkIts------~A~atRVs~LE~E-------~~~LR~~L~EKd~~i~~L 69 (272)
..||.||-.|.. |----|+..|..+ ++.-|.++.|||+.|..|
T Consensus 73 ekqlavaneiirslsdevmrneiritslqgdltftkkclenarsqisekdakinkl 128 (142)
T 1pl5_A 73 EKQLAVANEIIRSLSDEVMRNEIRITSLQGDLTFTKKCLENARSQISEKDAKINKL 128 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhHHHHHhhheeeeeeccchhhHHHHHHHHHhhhhhhhHHHHHH
Confidence 357888877762 2223345555544 234456666666666544
No 289
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=47.62 E-value=1.5e+02 Score=28.83 Aligned_cols=70 Identities=13% Similarity=0.117 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 024140 58 QLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLS-----------KENEALTNTVRKLQRDVSKLEVFRKTLVQSL 126 (272)
Q Consensus 58 ~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~-----------~E~~~La~TvKkL~rDvaKLE~FKk~LmqSL 126 (272)
++.+-|+...+|+.++..|...-. ..-.++.++. ++...|...++.|..++..||.--+.+-..|
T Consensus 71 ~~~~ld~~~r~~~~~~~~l~~~rn----~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l 146 (501)
T 1wle_A 71 GIISTWQELRQLREQIRSLEEEKE----AVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQF 146 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555554332 2222222222 2445777777888888877777666666666
Q ss_pred ccccc
Q 024140 127 KDDED 131 (272)
Q Consensus 127 q~d~~ 131 (272)
++.-.
T Consensus 147 ~~~l~ 151 (501)
T 1wle_A 147 YLRAL 151 (501)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 55433
No 290
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=47.61 E-value=24 Score=28.37 Aligned_cols=30 Identities=17% Similarity=0.266 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 024140 86 QAQADKERLSKENEALTNTVRKLQRDVSKL 115 (272)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (272)
+..+...+|.+|+..|...+++|.+.++..
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~ 58 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSVIADL 58 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666666666666665554
No 291
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=47.53 E-value=84 Score=24.15 Aligned_cols=22 Identities=14% Similarity=0.228 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024140 60 AEKDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 60 ~EKd~~i~~Lq~r~s~le~~l~ 81 (272)
.|=...+.+|++-+..|+.++.
T Consensus 39 ~El~~~l~el~e~l~DL~~SI~ 60 (95)
T 2c5k_T 39 EEIQDILKDVEETIVDLDRSII 60 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666666654
No 292
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=47.40 E-value=42 Score=24.06 Aligned_cols=19 Identities=26% Similarity=0.274 Sum_probs=11.9
Q ss_pred HhhhhhHHHHHHHHHHHHH
Q 024140 43 TRVSDLESEHSALRSQLAE 61 (272)
Q Consensus 43 tRVs~LE~E~~~LR~~L~E 61 (272)
.++..||.++..|...-.+
T Consensus 30 ~~~~~Le~~v~~L~~eN~~ 48 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYH 48 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3467777777777654443
No 293
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=47.33 E-value=1.6e+02 Score=29.54 Aligned_cols=43 Identities=14% Similarity=0.144 Sum_probs=35.3
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 39 IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~ 81 (272)
+-.+.=+...|.|.+++|+.|.+-+..++.+|+|+...+..|+
T Consensus 310 w~~~hp~~~Aer~~e~a~ael~~a~k~~a~~~er~~~t~~~~~ 352 (551)
T 2b5u_A 310 WDATHPVEAAERNYERARAELNQANEDVARNQERQAKAVQVYN 352 (551)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345557788999999999999999999999999886666665
No 294
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=47.19 E-value=23 Score=28.64 Aligned_cols=38 Identities=18% Similarity=0.372 Sum_probs=27.5
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYS 78 (272)
Q Consensus 41 ~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~ 78 (272)
|..|+..|+..+..|...+.++.+.|..++..+..+..
T Consensus 103 l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~ 140 (151)
T 2zdi_C 103 LEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQ 140 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677788888888888777777777777766655543
No 295
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=47.18 E-value=93 Score=23.74 Aligned_cols=46 Identities=20% Similarity=0.352 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024140 61 EKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQ 109 (272)
Q Consensus 61 EKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (272)
|+.+.+..|+.-+..+|..+- ++|....+++..+..+ |-.|..-|+
T Consensus 27 ~~~~~~~~~~~~~~~~EKTIDDLEDkL~~eKEK~k~i~ee---LDqTL~ELn 75 (77)
T 3mtu_E 27 ERTEALQQLRVNYGSFVSEYNDLEEKVAHAKEENLNMHQM---LDQTLLELN 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH---HHHHHHHhh
Confidence 344444445444444444443 4444555555555555 445554443
No 296
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=47.06 E-value=55 Score=23.95 Aligned_cols=22 Identities=14% Similarity=0.306 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhH
Q 024140 91 KERLSKENEALTNTVRKLQRDV 112 (272)
Q Consensus 91 ~~kL~~E~~~La~TvKkL~rDv 112 (272)
+..|++++..|...+..|.+.+
T Consensus 49 I~~L~~~~~~l~~e~~~L~~~~ 70 (83)
T 1nkp_B 49 IQYMRRKNHTHQQDIDDLKRQN 70 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 297
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=47.05 E-value=66 Score=21.95 Aligned_cols=25 Identities=12% Similarity=0.197 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 024140 86 QAQADKERLSKENEALTNTVRKLQR 110 (272)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~r 110 (272)
.+.....++.++-......|.+|+.
T Consensus 30 ~~k~~~~~~~~~l~~~~~~I~~~k~ 54 (60)
T 3htk_A 30 KAKEKINEIFEKLNTIRDEVIKKKN 54 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333334444444433
No 298
>2vrs_A Sigma-C capsid protein; alpha-helical coiled coil, receptor-binding, triple beta-spiral, viral protein, virion, coiled coil, beta-barrel; 1.75A {Avian reovirus} PDB: 2jjl_A 2bsf_A 2bt7_A 2bt8_A
Probab=46.78 E-value=24 Score=31.50 Aligned_cols=29 Identities=21% Similarity=0.215 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 024140 88 QADKERLSKENEALTNTVRKLQRDVSKLE 116 (272)
Q Consensus 88 ~ee~~kL~~E~~~La~TvKkL~rDvaKLE 116 (272)
.-+..+|...-..++-+|..|.+-|..||
T Consensus 10 st~v~NlkssVS~~~l~ls~L~~Rv~~le 38 (211)
T 2vrs_A 10 STAISNLKSDISSNGLAITDLQDRVKSLE 38 (211)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 34455666667777777777777777777
No 299
>3fx0_A NF-kappa-B essential modulator; coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia, HOST-virus interaction; 3.20A {Homo sapiens}
Probab=46.75 E-value=11 Score=29.93 Aligned_cols=55 Identities=13% Similarity=0.299 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 49 ESEHSALRSQLAEKD---SRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRK 107 (272)
Q Consensus 49 E~E~~~LR~~L~EKd---~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKk 107 (272)
..+|..|++.++.+. ..|.-|+.++.-....+. .-+.+-++|..|+..|...+-.
T Consensus 37 Q~~ideLKe~i~q~~~~~E~i~vL~aQ~~iY~~DF~----aERaaREk~~~EKe~L~~ql~~ 94 (96)
T 3fx0_A 37 QEVIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQ----AERQAREKLAEKKELLQEQLEQ 94 (96)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHTSSTTSCC------
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH----HHHHHHHHHHhhHHHHHHHHHh
Confidence 445666666666555 555666666665555554 3344455666666666655443
No 300
>1nyh_A Regulatory protein SIR4; coiled-coil, transcription regulation, repressor, transcript repressor; 3.10A {Saccharomyces cerevisiae} SCOP: h.1.23.1
Probab=46.72 E-value=38 Score=28.47 Aligned_cols=43 Identities=35% Similarity=0.512 Sum_probs=23.3
Q ss_pred hhhHHHHHHHHH------HHHHHhhhhhHHH-------HHHHHHHHHHHHHHHHHH
Q 024140 27 FEQLDVARKITS------IAISTRVSDLESE-------HSALRSQLAEKDSRIAEL 69 (272)
Q Consensus 27 ~EQLdlarkIts------~A~atRVs~LE~E-------~~~LR~~L~EKd~~i~~L 69 (272)
..||.||-.|.. |----|+..|..+ ++..|.++.|||+.|..|
T Consensus 97 ekqlavaneiirslsdevmrneiritslqgdltftkkclenarsqisekdakinkl 152 (166)
T 1nyh_A 97 EKQLAVANEIIRSLSDEVMRNEIRITSLQGDLTFTKKCLENARSQISEKDAKINKL 152 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHhhheeeeeeccchhhHHHHHHHHHhhhhhhhHHHHHH
Confidence 347888877762 2223345555544 234455666666666544
No 301
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=46.61 E-value=72 Score=30.13 Aligned_cols=41 Identities=20% Similarity=0.260 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 024140 89 ADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (272)
Q Consensus 89 ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq~d 129 (272)
++...|..|-..|.+.+|.|..++..+|.=-..++.+|-+-
T Consensus 64 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~ 104 (421)
T 1ses_A 64 EEKEALIARGKALGEEAKRLEEALREKEARLEALLLQVPLP 104 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 45567777788888888888888888877767777777554
No 302
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=46.50 E-value=1.1e+02 Score=24.55 Aligned_cols=79 Identities=11% Similarity=0.277 Sum_probs=40.2
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH-------HHh
Q 024140 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVR-------KLQ 109 (272)
Q Consensus 40 A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvK-------kL~ 109 (272)
|+..|..+...-++.+-..++--.+.|..=-.++....++|| +||..-...+..=-+|-..+++++- -|.
T Consensus 17 ~~~~~~~ri~~aig~~d~ri~~NtqaI~~NS~aiaanTr~lQqh~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~e 96 (114)
T 2xzr_A 17 HIENEIARIKKLIGAIDGRVTRNTQSIEKNSKAIAANTRTLQQHSARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIE 96 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcchHHHHHHHHhhhhHHHHhhHHHHHhchHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 555555555555555555555555555555555556666666 5554433333333334444444443 344
Q ss_pred hhHHHHHHH
Q 024140 110 RDVSKLEVF 118 (272)
Q Consensus 110 rDvaKLE~F 118 (272)
.+|++|+.+
T Consensus 97 ne~ar~kkl 105 (114)
T 2xzr_A 97 NEIARIKKL 105 (114)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555433
No 303
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=46.46 E-value=1.1e+02 Score=26.69 Aligned_cols=12 Identities=17% Similarity=0.299 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 024140 50 SEHSALRSQLAE 61 (272)
Q Consensus 50 ~E~~~LR~~L~E 61 (272)
.++..++.+|.+
T Consensus 69 ~~~~~~~a~l~~ 80 (341)
T 3fpp_A 69 NQIKEVEATLME 80 (341)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 304
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=46.46 E-value=1.2e+02 Score=30.18 Aligned_cols=15 Identities=13% Similarity=0.426 Sum_probs=8.3
Q ss_pred HHHHHHHhhhHHHHH
Q 024140 102 TNTVRKLQRDVSKLE 116 (272)
Q Consensus 102 a~TvKkL~rDvaKLE 116 (272)
.+.++.|+.++..|+
T Consensus 566 ~~~~~~~~~ei~~l~ 580 (592)
T 1f5n_A 566 QKESRIMKNEIQDLQ 580 (592)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 445566666655553
No 305
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=46.22 E-value=1.1e+02 Score=24.39 Aligned_cols=11 Identities=18% Similarity=-0.112 Sum_probs=6.5
Q ss_pred hhhHHHHHHHH
Q 024140 27 FEQLDVARKIT 37 (272)
Q Consensus 27 ~EQLdlarkIt 37 (272)
.++|+..+.|.
T Consensus 43 ~~dl~~l~~I~ 53 (142)
T 3gp4_A 43 AEDLRWILFTR 53 (142)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45666666664
No 306
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=46.20 E-value=32 Score=32.86 Aligned_cols=24 Identities=13% Similarity=0.151 Sum_probs=15.8
Q ss_pred HHHHHHHHHhhhHHHHHH-HHHHHH
Q 024140 100 ALTNTVRKLQRDVSKLEV-FRKTLV 123 (272)
Q Consensus 100 ~La~TvKkL~rDvaKLE~-FKk~Lm 123 (272)
.+..-++.|...+.+||. ++.-|+
T Consensus 91 ~a~~e~~~l~~~l~~le~~l~~lLl 115 (371)
T 1zbt_A 91 MAKEELKNSKVAKEEYEEKLRFLLL 115 (371)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345567888888888875 554443
No 307
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=45.61 E-value=57 Score=29.72 Aligned_cols=24 Identities=17% Similarity=0.122 Sum_probs=10.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 024140 47 DLESEHSALRSQLAEKDSRIAELQ 70 (272)
Q Consensus 47 ~LE~E~~~LR~~L~EKd~~i~~Lq 70 (272)
..+.|+..|+.+..+-.++|++|+
T Consensus 182 ~~~~eie~L~~~~~~L~eEi~~Le 205 (315)
T 2ve7_A 182 VDAFKLESLEAKNRALNEQIARLE 205 (315)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555444444444444443
No 308
>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C
Probab=45.31 E-value=1.5e+02 Score=25.62 Aligned_cols=29 Identities=0% Similarity=0.192 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 024140 86 QAQADKERLSKENEALTNTVRKLQRDVSK 114 (272)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDvaK 114 (272)
...+....+.+.-..+...+..|...+.+
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (213)
T 3g67_A 50 KSGTNVDQIVERVKEASSQIGETLENIRS 78 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444333
No 309
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=44.85 E-value=1.2e+02 Score=24.32 Aligned_cols=42 Identities=24% Similarity=0.412 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 024140 82 DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLV 123 (272)
Q Consensus 82 ~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~Lm 123 (272)
.++..+.+++..|+......-..|..|...|.+|.+=-..|.
T Consensus 44 ~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~ 85 (104)
T 3s9g_A 44 KSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLL 85 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHH
Confidence 344466777777777777777777777777777755444443
No 310
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=44.74 E-value=37 Score=22.70 Aligned_cols=21 Identities=29% Similarity=0.559 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024140 52 HSALRSQLAEKDSRIAELQSQ 72 (272)
Q Consensus 52 ~~~LR~~L~EKd~~i~~Lq~r 72 (272)
-..|-..+..||..|+.|+++
T Consensus 9 NekLhk~ie~KdeeIa~Lk~e 29 (37)
T 1t6f_A 9 NEKLHKEIEQKDNEIARLKKE 29 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555555433
No 311
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=44.55 E-value=1.4e+02 Score=25.05 Aligned_cols=31 Identities=16% Similarity=0.132 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 024140 98 NEALTNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (272)
Q Consensus 98 ~~~La~TvKkL~rDvaKLE~FKk~LmqSLq~ 128 (272)
++.....|.++|+--.+++.-...++..||+
T Consensus 176 ~~~Y~~~v~~~n~~~~~~~~~~~~~~~~lQ~ 206 (276)
T 2v0o_A 176 TDTYKLYVEKYALAKADFEQKMTETAQKFQD 206 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555444444444444444443
No 312
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=44.50 E-value=41 Score=22.15 Aligned_cols=16 Identities=19% Similarity=0.200 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 024140 86 QAQADKERLSKENEAL 101 (272)
Q Consensus 86 ~a~ee~~kL~~E~~~L 101 (272)
....+|..|++|...|
T Consensus 12 eLl~~n~~Le~eV~rL 27 (34)
T 2oxj_A 12 ELLXKNXHLEXEVXRL 27 (34)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHH
Confidence 3344444444444444
No 313
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=44.33 E-value=1.3e+02 Score=24.49 Aligned_cols=20 Identities=20% Similarity=0.321 Sum_probs=14.5
Q ss_pred HHHHHhhhhhHHHHHHHHHH
Q 024140 39 IAISTRVSDLESEHSALRSQ 58 (272)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~ 58 (272)
..|-++...||.|...|.+.
T Consensus 5 ~~i~~~l~~Leae~q~L~~~ 24 (119)
T 3etw_A 5 ASLVGELQALDAEYQNLANQ 24 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 35667788888888777654
No 314
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=44.14 E-value=1.2e+02 Score=24.70 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHH
Q 024140 66 IAELQSQIESIYSSLS---DKLGQAQA 89 (272)
Q Consensus 66 i~~Lq~r~s~le~~l~---~rL~~a~e 89 (272)
|.+||+.+...|.+|. -||+.|.+
T Consensus 24 ieeLq~Ei~~~E~QL~~ArQKLkdA~~ 50 (113)
T 4fi5_A 24 MEELQREINAHEGQLVIARQKVRDAEK 50 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777666 45555544
No 315
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=43.83 E-value=1.3e+02 Score=24.39 Aligned_cols=16 Identities=6% Similarity=-0.012 Sum_probs=7.0
Q ss_pred HHHhhhhhHHHHHHHH
Q 024140 41 ISTRVSDLESEHSALR 56 (272)
Q Consensus 41 ~atRVs~LE~E~~~LR 56 (272)
|......|..+++.+-
T Consensus 34 Lk~e~e~l~~~~~~~~ 49 (155)
T 2oto_A 34 LKARLENAMEVAGRDF 49 (155)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444433
No 316
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=43.53 E-value=45 Score=30.02 Aligned_cols=10 Identities=30% Similarity=0.371 Sum_probs=4.7
Q ss_pred HHHHHHHHHh
Q 024140 115 LEVFRKTLVQ 124 (272)
Q Consensus 115 LE~FKk~Lmq 124 (272)
+|+|=+.+|.
T Consensus 71 aenlf~eII~ 80 (233)
T 2yko_A 71 LENTLQDIIQ 80 (233)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4554444443
No 317
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=43.50 E-value=1e+02 Score=23.09 Aligned_cols=40 Identities=25% Similarity=0.424 Sum_probs=21.0
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 42 atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~ 81 (272)
..|+..+|.+-..|..++..=...+.+=+.+-..+..+|.
T Consensus 6 ~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk 45 (72)
T 3cve_A 6 HMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLK 45 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666555555555555555544444444444444
No 318
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=43.10 E-value=1.3e+02 Score=24.25 Aligned_cols=16 Identities=31% Similarity=0.362 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 024140 66 IAELQSQIESIYSSLS 81 (272)
Q Consensus 66 i~~Lq~r~s~le~~l~ 81 (272)
|.+||+.+...|.+|.
T Consensus 37 ieeLQ~Ei~~~E~QL~ 52 (107)
T 2k48_A 37 LQELQENITAHEQQLV 52 (107)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555555555554
No 319
>1yvl_A Signal transducer and activator of transcription 1-alpha/beta; signaling protein; HET: PTR; 3.00A {Homo sapiens}
Probab=43.01 E-value=1.9e+02 Score=29.70 Aligned_cols=39 Identities=10% Similarity=0.178 Sum_probs=24.2
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSS 79 (272)
Q Consensus 41 ~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~ 79 (272)
+..+-..+|..+..||..+.+-++.|..|++.-..++-.
T Consensus 135 ~~~~~~~i~~~v~~lr~~~q~~e~~ik~Le~~Qe~f~~~ 173 (683)
T 1yvl_A 135 MLDKQKELDSKVRNVKDKVMCIEHEIKSLEDLQDEYDFK 173 (683)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666777777777777777666666555544443
No 320
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=42.97 E-value=21 Score=25.07 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024140 85 GQAQADKERLSKENEALTNTVRKLQRD 111 (272)
Q Consensus 85 ~~a~ee~~kL~~E~~~La~TvKkL~rD 111 (272)
.+..++...|.+||..|...++.|+..
T Consensus 30 d~v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 30 AQVRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 355566667777777777777666543
No 321
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC, protein binding; 2.40A {Homo sapiens}
Probab=42.86 E-value=1.3e+02 Score=27.33 Aligned_cols=66 Identities=18% Similarity=0.222 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 024140 59 LAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSL 126 (272)
Q Consensus 59 L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSL 126 (272)
+..+.++-.|++.|+..++..+..+...+......|...+-.....++.|-.+.+ .++|...|.=+
T Consensus 172 lek~r~~EEea~~K~eeAd~~Y~~~V~~a~~~r~eL~~tk~~~v~~Lr~LI~e~D--~~lk~~t~~~f 237 (279)
T 3qwe_A 172 QERRRRSREEAQAKAQEAEALYQACVREANARQQDLEIAKQRIVSHVRKLVFQGD--EVLRRVTLSLF 237 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred hhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 4446677788999999999999888888888888887777666666666655444 24555444433
No 322
>1no4_A Late, head morphogenesis protein; coiled-coil, viral protein; 2.20A {Bacillus phage PHI29} SCOP: h.1.24.1 PDB: 1noh_A
Probab=42.72 E-value=1.2e+02 Score=23.68 Aligned_cols=52 Identities=21% Similarity=0.317 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 024140 60 AEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (272)
Q Consensus 60 ~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (272)
.|+.+.+++|+.-+...=.++. ....--+||.-||+.|+-.--||-|+|---
T Consensus 22 serte~lqqlr~~y~s~~se~~----dlt~s~ekl~ae~~dlivsnsklfrqig~t 73 (97)
T 1no4_A 22 SERTEALQQLRVNYGSFVSEYN----DLTKSHEKLAAEKDDLIVSNSKLFRQIGLT 73 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHh----hhhHHHHHHHhccCCeeeecHHHHHHhccc
Confidence 3666777777777666666665 555667899999999998888888887543
No 323
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=42.69 E-value=1.6e+02 Score=25.26 Aligned_cols=27 Identities=19% Similarity=0.206 Sum_probs=15.2
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 024140 101 LTNTVRKLQRDVSKLEVFRKTLVQSLK 127 (272)
Q Consensus 101 La~TvKkL~rDvaKLE~FKk~LmqSLq 127 (272)
...-..+|..-+++.|.-=..|.+++.
T Consensus 126 p~~L~~~L~~a~~e~eeeS~~l~~~F~ 152 (192)
T 2p22_C 126 DIALKKKLEQNTKKLDEESSQLETTTR 152 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344455555666666666666666653
No 324
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=42.62 E-value=75 Score=29.87 Aligned_cols=34 Identities=15% Similarity=0.410 Sum_probs=13.3
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIE 74 (272)
Q Consensus 41 ~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s 74 (272)
+.+||..|+.-...|-+.|..+...+.+|+++++
T Consensus 210 l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 243 (373)
T 3hhm_B 210 LKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMN 243 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334433333333333333333333333333333
No 325
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=42.57 E-value=1.2e+02 Score=23.51 Aligned_cols=72 Identities=15% Similarity=0.188 Sum_probs=37.3
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 024140 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (272)
Q Consensus 41 ~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDv 112 (272)
+-..|.++|..+...|+++.|=++++..+...-.--..+|..-|+..-+--.-|+..-..|-+.|+++.-+.
T Consensus 10 F~~lv~~fe~rL~~Yr~~IeelE~~L~s~s~~~~~Tpq~L~~~l~~~h~~FiaLAa~l~~lH~~V~~~Ke~Y 81 (93)
T 3t98_B 10 FRVLVQQFEVQLQQYRQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQY 81 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888888888888877777776654321100122222222333333444444444444444444433
No 326
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=42.57 E-value=1.7e+02 Score=25.57 Aligned_cols=57 Identities=21% Similarity=0.330 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 024140 65 RIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (272)
Q Consensus 65 ~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~L 122 (272)
.|++|. ||..|=-.|.+||....--......|+.+|....+.|.++..-=+.+|.+|
T Consensus 71 FigDLe-kVv~LLLsLs~RLaRvenaL~~~~~Er~sL~~K~~~L~~Q~EDAkeLKe~l 127 (190)
T 3thf_A 71 HVDAVG-NITSLLLSLSERLAQTESSLETRQQERGALESKRDLLYEQMEEAQRLKSDI 127 (190)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHhHHHHHHHHHccChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345553 555555556677777777666779999999999999999888877777765
No 327
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=42.50 E-value=90 Score=22.26 Aligned_cols=16 Identities=19% Similarity=0.385 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 024140 63 DSRIAELQSQIESIYS 78 (272)
Q Consensus 63 d~~i~~Lq~r~s~le~ 78 (272)
+..|.+|+.++..+|.
T Consensus 5 ~~~~~~le~kl~~lEn 20 (65)
T 3m0d_C 5 EKLLAELEGKLRVFEN 20 (65)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444443
No 328
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=42.44 E-value=20 Score=22.35 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024140 53 SALRSQLAEKDSRIAELQSQIE 74 (272)
Q Consensus 53 ~~LR~~L~EKd~~i~~Lq~r~s 74 (272)
++|+++-+.-.++|+.|+-.+.
T Consensus 3 rrlkqknarlkqeiaaleyeia 24 (28)
T 3ra3_B 3 RRLKQKNARLKQEIAALEYEIA 24 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhHHHHHHHHHHHHHH
Confidence 3444444443444444443333
No 329
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=41.93 E-value=32 Score=27.45 Aligned_cols=36 Identities=19% Similarity=0.333 Sum_probs=0.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESI 76 (272)
Q Consensus 41 ~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~l 76 (272)
|-.|+-.||.|-=.|-.++..++-.|.+|..||..|
T Consensus 54 Lh~~I~~LEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (106)
T 1j1d_B 54 LWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRINDN 89 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhhhHHHHHHhhhHHHHHHHHHHHHh
No 330
>3tq2_A KE1; parallel three helix bundle, de novo protein; 1.10A {Synthetic}
Probab=41.89 E-value=60 Score=21.24 Aligned_cols=31 Identities=26% Similarity=0.362 Sum_probs=12.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 45 VSDLESEHSALRSQLAEKDSRIAELQSQIES 75 (272)
Q Consensus 45 Vs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~ 75 (272)
|+.|...+..|++|..----.+..|.++++.
T Consensus 3 vsalkekvsalkeqflmlmfkvsalkekvsa 33 (36)
T 3tq2_A 3 VSALKEKVSALKEQFLMLMFKVSALKEKVSA 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444433322333444444443
No 331
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=41.78 E-value=69 Score=23.81 Aligned_cols=23 Identities=17% Similarity=0.361 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhH
Q 024140 90 DKERLSKENEALTNTVRKLQRDV 112 (272)
Q Consensus 90 e~~kL~~E~~~La~TvKkL~rDv 112 (272)
++.+|..|++.|.....-|.+.|
T Consensus 55 ~~~~l~~e~~~L~~e~~~L~~~L 77 (80)
T 1nlw_A 55 SDRKAVHQIDQLQREQRHLKRQL 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444433
No 332
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=41.38 E-value=1.2e+02 Score=25.23 Aligned_cols=18 Identities=22% Similarity=0.318 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 024140 52 HSALRSQLAEKDSRIAEL 69 (272)
Q Consensus 52 ~~~LR~~L~EKd~~i~~L 69 (272)
+..|-..|..|.+.|..|
T Consensus 59 ~~ela~dli~kakqIe~L 76 (151)
T 1yke_B 59 IDELSTDIILKTRQINKL 76 (151)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444433
No 333
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=41.26 E-value=51 Score=27.29 Aligned_cols=35 Identities=20% Similarity=0.408 Sum_probs=17.3
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESI 76 (272)
Q Consensus 42 atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~l 76 (272)
-.|+..||.|-=.|-.++..++-.|.+|..||+.|
T Consensus 71 h~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rV~Dl 105 (133)
T 1j1d_C 71 HARVDKVDEERYDIEAKVTKNITEIADLTQKIFDL 105 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHcchHHHHHHHHHHHH
Confidence 34444455554455555555555555555555444
No 334
>1g5g_A Fusion protein; NDV, paramyxovirus; HET: NAG BMA; 3.30A {Newcastle disease virus} SCOP: f.12.1.1 h.3.2.1 PDB: 3maw_A*
Probab=41.22 E-value=29 Score=34.25 Aligned_cols=76 Identities=14% Similarity=0.193 Sum_probs=19.9
Q ss_pred HHHH--HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 30 LDVA--RKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRK 107 (272)
Q Consensus 30 Ldla--rkIts~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKk 107 (272)
|.|| -+||+-+--.+..+.+++|.+||+.+..-.+.+.+|..-+..+-.+++ +.|+. =|+.|.-++..
T Consensus 96 LGVATaAqiTAavAL~~a~~na~~I~~lk~si~~tn~Av~~l~~~~~~~~~av~-----~~q~~-----in~~i~p~i~~ 165 (481)
T 1g5g_A 96 LGVATAAQITAASALIQANQNAANILRLKESIAATNEAVHEVTNGLSQLAVAVG-----KMQQF-----VNDQFNKTAQE 165 (481)
T ss_dssp --------------------------------------------CHHHHHHHHH-----HHHHH-----HHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH-----HHHHhhhhhhh
Confidence 4555 678877767788899999999999999999999999999888887775 11211 13455666666
Q ss_pred HhhhHHHH
Q 024140 108 LQRDVSKL 115 (272)
Q Consensus 108 L~rDvaKL 115 (272)
|.++++.+
T Consensus 166 l~C~v~~~ 173 (481)
T 1g5g_A 166 LDCIKITQ 173 (481)
T ss_dssp HHHHHHHH
T ss_pred cchHHHHH
Confidence 66666553
No 335
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=41.19 E-value=1.3e+02 Score=23.75 Aligned_cols=31 Identities=19% Similarity=0.303 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 51 EHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 51 E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~ 81 (272)
++..||.++.+=......|++++..||..|-
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le 43 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLE 43 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888888777788888888888887774
No 336
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=41.10 E-value=97 Score=22.23 Aligned_cols=39 Identities=21% Similarity=0.359 Sum_probs=25.4
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSS 79 (272)
Q Consensus 41 ~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~ 79 (272)
+...|+..-.....-++++.|+.+.+..|++|-..|...
T Consensus 9 v~~qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~L~~~ 47 (63)
T 1urq_A 9 VKGAASGVVGELARARLALDERGQKLSDLEERTAAMMSS 47 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555566666777777777777777776655543
No 337
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=41.04 E-value=1.4e+02 Score=24.05 Aligned_cols=69 Identities=12% Similarity=0.214 Sum_probs=39.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 024140 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIY--SSLS-DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (272)
Q Consensus 46 s~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le--~~l~-~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (272)
..+...+..|=..|..|.+.|..|=+.+=.++ .+.| .||+...+++....+|+.. .|++-.+-+.+++.
T Consensus 53 ~~f~~~~~ela~dli~k~kqIe~LIdsLP~~~~see~Q~~ri~~L~~E~~~~~~el~~---~v~e~e~ll~~v~~ 124 (132)
T 1ykh_B 53 EEFSNTIDELSTDIILKTRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIE---AIKKKEKLMRHVDS 124 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTTCCHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 34556677777788888888877755443332 2223 5666666666666655444 44444444444433
No 338
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=40.98 E-value=39 Score=22.26 Aligned_cols=12 Identities=17% Similarity=0.473 Sum_probs=5.8
Q ss_pred hhhhhHHHHHHH
Q 024140 44 RVSDLESEHSAL 55 (272)
Q Consensus 44 RVs~LE~E~~~L 55 (272)
||++||..+..|
T Consensus 2 RM~QLEdKVEeL 13 (34)
T 1uo4_A 2 RMKQIEDKGEEI 13 (34)
T ss_dssp -CHHHHHHHHHH
T ss_pred chhHHHHHHHHH
Confidence 555555555444
No 339
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=40.52 E-value=1.3e+02 Score=25.75 Aligned_cols=24 Identities=8% Similarity=0.073 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 58 QLAEKDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 58 ~L~EKd~~i~~Lq~r~s~le~~l~ 81 (272)
++.--+.++.+|++|+..++..|.
T Consensus 70 n~~sA~~~~d~lekKl~~aq~kL~ 93 (158)
T 3tul_A 70 KTDTAKSVYDAATKKLTQAQNKLQ 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccchHHHHHHHHHHHHHHHHHHHh
Confidence 334557788888888888888776
No 340
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=40.51 E-value=54 Score=30.98 Aligned_cols=28 Identities=25% Similarity=0.503 Sum_probs=12.8
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 024140 101 LTNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (272)
Q Consensus 101 La~TvKkL~rDvaKLE~FKk~LmqSLq~ 128 (272)
|...++.|..++..||.--+.+-..|++
T Consensus 73 l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (425)
T 2dq3_A 73 IQNRVKELKEEIDRLEEELRKVEEELKN 100 (425)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555444444444433
No 341
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=40.36 E-value=69 Score=25.67 Aligned_cols=28 Identities=21% Similarity=0.421 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 53 SALRSQLAEKDSRIAELQSQIESIYSSL 80 (272)
Q Consensus 53 ~~LR~~L~EKd~~i~~Lq~r~s~le~~l 80 (272)
..|.+.|++..+.|.+|..++..|...+
T Consensus 7 ~al~~eL~~~~~ei~~L~~ei~eLk~~v 34 (106)
T 4e61_A 7 VAIQAELTKSQETIGSLNEEIEQYKGTV 34 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566665556666555555444333
No 342
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=40.35 E-value=68 Score=30.27 Aligned_cols=9 Identities=22% Similarity=0.294 Sum_probs=5.2
Q ss_pred CchhhHHHH
Q 024140 25 DPFEQLDVA 33 (272)
Q Consensus 25 DP~EQLdla 33 (272)
+|..++.+-
T Consensus 162 ~~~~rr~~L 170 (517)
T 4ad8_A 162 SPANQRGLL 170 (517)
T ss_dssp SHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 666665543
No 343
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=39.87 E-value=63 Score=26.89 Aligned_cols=40 Identities=33% Similarity=0.380 Sum_probs=13.5
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 39 IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~ 81 (272)
.++..+++.+|+|...|++++. -.|..|+=++.++|.+|.
T Consensus 33 ~~~e~~~~~~~~Elee~kqq~~---~~~d~L~lQ~esmeaalk 72 (130)
T 3cl3_D 33 RAASEQARQLESEREALQQQHS---VQVDQLRMQGQSVEAALR 72 (130)
T ss_dssp ------------------CTTT---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 3445555666666665555442 234556667777787776
No 344
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=39.76 E-value=1.7e+02 Score=24.74 Aligned_cols=21 Identities=33% Similarity=0.580 Sum_probs=12.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHH
Q 024140 44 RVSDLESEHSALRSQLAEKDS 64 (272)
Q Consensus 44 RVs~LE~E~~~LR~~L~EKd~ 64 (272)
+|+.||..+..|-.+|.|-..
T Consensus 12 ~ia~L~~D~~s~~~eleEnqe 32 (167)
T 4gkw_A 12 EVADLKQDTESLQKQLEENQE 32 (167)
T ss_dssp SHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666554433
No 345
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=39.60 E-value=2.1 Score=34.46 Aligned_cols=21 Identities=19% Similarity=0.191 Sum_probs=17.4
Q ss_pred CCCCChhHHHhcCCCCchhhH
Q 024140 10 STFDLPEEVLQVLPSDPFEQL 30 (272)
Q Consensus 10 ~dF~lp~eil~vLP~DP~EQL 30 (272)
.-..|+|+-|.-||.+-|.++
T Consensus 4 ~~~~~sd~~Lv~m~v~elN~~ 24 (107)
T 3a5t_A 4 MGTSLTDEELVTMSVRELNQH 24 (107)
T ss_dssp CCCCCCHHHHHHSCHHHHHHT
T ss_pred CCCCCCHHHHhcCCHHHHHHH
Confidence 356789999999999888876
No 346
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=39.36 E-value=98 Score=27.57 Aligned_cols=36 Identities=25% Similarity=0.338 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Q 024140 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQS 125 (272)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqS 125 (272)
...++++.|.+||..|. .|.-.+..|...=..||..
T Consensus 126 ~l~eEi~~LkeEn~eLk----eLae~~q~la~vi~~l~~~ 161 (209)
T 2wvr_A 126 QKDNEIARLKKENKELA----EVAEHVQYMAELIERLNGE 161 (209)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcC
Confidence 33344444444444433 3333333344444445544
No 347
>1bf5_A Signal transducer and activator of transcription 1-alpha/beta; complex (SH2 domain/DNA), SH2 domain, transcription factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP: a.47.1.1 b.2.5.5 d.93.1.1
Probab=39.28 E-value=1.9e+02 Score=29.11 Aligned_cols=38 Identities=11% Similarity=0.167 Sum_probs=32.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 44 RVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~ 81 (272)
|...+|..+..||....+-++.|..|++.-..++..++
T Consensus 3 ~~~~i~~~~~~l~~~~q~~e~~~k~Le~~Qe~f~~~y~ 40 (575)
T 1bf5_A 3 KQKELDSKVRNVKDKVMCIEHEIKSLEDLQDEYDFKCK 40 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 55678999999999999999999999888887777766
No 348
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=39.21 E-value=1.4e+02 Score=23.67 Aligned_cols=65 Identities=17% Similarity=0.236 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 024140 48 LESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (272)
Q Consensus 48 LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE 116 (272)
||.++-+-.+-|.+++.....-..-|..|-..|- +-+. + ..+-++.-..|..-|++||..|..+.
T Consensus 23 Lq~qLT~Aq~~l~~~eaQAaTCNqTV~tL~~SL~-keka--q-~q~qq~~v~elqgEI~~Lnq~Lqda~ 87 (99)
T 3ni0_A 23 LQRQLTRTQDSLLQAETQANSCNLTVVTLQESLE-KKVS--Q-ALEQQARIKELENEVTKLNQELENLR 87 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--H-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--h-hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555666555555555555555553 1111 1 11222345556677777777665554
No 349
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=39.07 E-value=1.8e+02 Score=24.81 Aligned_cols=63 Identities=16% Similarity=0.283 Sum_probs=46.9
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024140 36 ITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQ 109 (272)
Q Consensus 36 Its~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (272)
++.--+.+|+..|+.--..|-+.|..+...+.+|++++++|--.|. +|.+.+|....-++..+
T Consensus 96 ~N~e~LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~-----------qL~K~rD~yl~wL~~~G 158 (170)
T 3l4q_C 96 LNSERLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLM-----------QLRKIRDQYLVWLTQKG 158 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH-----------HHHHHHHHHHHHHHHcC
Confidence 4566788888888888888888888888888888888887776554 66677776665554433
No 350
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=39.01 E-value=1e+02 Score=22.66 Aligned_cols=17 Identities=24% Similarity=0.114 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024140 82 DKLGQAQADKERLSKEN 98 (272)
Q Consensus 82 ~rL~~a~ee~~kL~~E~ 98 (272)
+||+.+.--+++...|.
T Consensus 37 ~KLRdiE~l~q~~e~e~ 53 (75)
T 3mtu_A 37 GKLRNIELICQENEGEN 53 (75)
T ss_dssp HHHHHHHHHHHHTGGGT
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 55555555555544333
No 351
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=38.86 E-value=16 Score=32.39 Aligned_cols=33 Identities=9% Similarity=0.099 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 024140 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVF 118 (272)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~F 118 (272)
...+||++|.+|+..|......+..--+..+.|
T Consensus 23 ~l~~eN~~Lk~e~~~l~~~~~~~~~l~~En~rL 55 (255)
T 2j5u_A 23 NTYTENQHLKERLEELAQLESEVADLKKENKDL 55 (255)
T ss_dssp ---CTTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666667776666665555444444444444
No 352
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=38.62 E-value=75 Score=21.23 Aligned_cols=12 Identities=42% Similarity=0.626 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHH
Q 024140 86 QAQADKERLSKE 97 (272)
Q Consensus 86 ~a~ee~~kL~~E 97 (272)
.++++|+||.++
T Consensus 4 ~~L~ENekLhk~ 15 (37)
T 1t6f_A 4 EALKENEKLHKE 15 (37)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344455554444
No 353
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=38.60 E-value=2.4e+02 Score=27.53 Aligned_cols=31 Identities=13% Similarity=0.146 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 024140 99 EALTNTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (272)
Q Consensus 99 ~~La~TvKkL~rDvaKLE~FKk~LmqSLq~d 129 (272)
..|...++.|..++..||.--+.|-..|++-
T Consensus 74 ~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~ 104 (485)
T 3qne_A 74 KDLIAEKEKLSNEKKEIIEKEAEADKNLRSK 104 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666655555555543
No 354
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=38.58 E-value=2.4e+02 Score=28.00 Aligned_cols=25 Identities=12% Similarity=0.092 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 024140 33 ARKITSIAISTRVSDLESEHSALRSQLA 60 (272)
Q Consensus 33 arkIts~A~atRVs~LE~E~~~LR~~L~ 60 (272)
++|+.-.+. ...+..-++++|..+.
T Consensus 589 ~~~~~~~~~---~~~~~~~~~~~~~~~~ 613 (695)
T 2j69_A 589 ARRELVKTA---KKELVKHLPQVAHEQS 613 (695)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HHHHHHHhHHHHHHHH
Confidence 555554443 4444445555554443
No 355
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=38.35 E-value=70 Score=22.09 Aligned_cols=17 Identities=24% Similarity=0.440 Sum_probs=9.2
Q ss_pred HhhhhhHHHHHHHHHHH
Q 024140 43 TRVSDLESEHSALRSQL 59 (272)
Q Consensus 43 tRVs~LE~E~~~LR~~L 59 (272)
-||.+||+-+..|..++
T Consensus 5 ekv~~Le~~ld~LqTr~ 21 (46)
T 3swy_A 5 EKVEQLGSSLDTLQTRF 21 (46)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45666666555554443
No 356
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=38.28 E-value=96 Score=26.38 Aligned_cols=9 Identities=56% Similarity=0.663 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 024140 55 LRSQLAEKD 63 (272)
Q Consensus 55 LR~~L~EKd 63 (272)
||+++..|.
T Consensus 90 Lr~ql~akr 98 (175)
T 3lay_A 90 LRQQLISKR 98 (175)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 357
>2rr9_C Putative uncharacterized protein UIMC1; Lys63-linked diubiquitin, ubiquitin-interacting motif, ubiqu RAP80, DNA repair, nuclear protein; NMR {Homo sapiens}
Probab=37.51 E-value=80 Score=21.85 Aligned_cols=10 Identities=40% Similarity=0.394 Sum_probs=5.9
Q ss_pred hhhHHHHHHH
Q 024140 27 FEQLDVARKI 36 (272)
Q Consensus 27 ~EQLdlarkI 36 (272)
.|||.||-|.
T Consensus 4 EEq~ALA~km 13 (46)
T 2rr9_C 4 EEQFALALKM 13 (46)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4677666544
No 358
>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2; I-BAR, protein binding; 2.25A {Mus musculus}
Probab=37.34 E-value=2.2e+02 Score=25.24 Aligned_cols=34 Identities=15% Similarity=0.254 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 024140 30 LDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRI 66 (272)
Q Consensus 30 LdlarkIts~A~atRVs~LE~E~~~LR~~L~EKd~~i 66 (272)
+|-.-||..+|..++++ .|++..=-++.|--+.|
T Consensus 54 ~dA~~Kige~A~~S~~s---keLG~vL~qis~~hR~i 87 (222)
T 3ok8_A 54 FSAIQKIGEQALQSSTS---QILGEILVQMSDTQRHL 87 (222)
T ss_dssp HHHHHHHHHHHHHSSSC---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCch---hHHHHHHHHHHHHHHHH
Confidence 45567889999999886 56666666666665555
No 359
>2y7c_A Type-1 restriction enzyme ecoki specificity prote; transferase; 18.00A {Escherichia coli} PDB: 2y7h_A*
Probab=37.23 E-value=1.4e+02 Score=26.38 Aligned_cols=22 Identities=23% Similarity=0.534 Sum_probs=12.1
Q ss_pred ChhHHHh----cCCCCchhhHHHHHHH
Q 024140 14 LPEEVLQ----VLPSDPFEQLDVARKI 36 (272)
Q Consensus 14 lp~eil~----vLP~DP~EQLdlarkI 36 (272)
|..+.+. .||. -.||-.++.+|
T Consensus 360 i~~~~l~~~~i~lPp-l~EQ~~Iv~~l 385 (464)
T 2y7c_A 360 ISGKDIKSQVVLLPP-VKEQAEIVRRV 385 (464)
T ss_dssp CCHHHHHHCEEEECC-HHHHHHHHHHH
T ss_pred ecHHHHhcCcCCCCC-HHHHHHHHHHH
Confidence 5555544 4564 45776665444
No 360
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=36.92 E-value=53 Score=21.64 Aligned_cols=12 Identities=17% Similarity=0.459 Sum_probs=5.2
Q ss_pred hhhhhHHHHHHH
Q 024140 44 RVSDLESEHSAL 55 (272)
Q Consensus 44 RVs~LE~E~~~L 55 (272)
||++||..+..|
T Consensus 2 RMnQLEdKVEeL 13 (34)
T 3c3f_A 2 RMXQIEXKLEXI 13 (34)
T ss_dssp CHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH
Confidence 444444444333
No 361
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=36.71 E-value=1.7e+02 Score=23.85 Aligned_cols=20 Identities=5% Similarity=0.255 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024140 50 SEHSALRSQLAEKDSRIAEL 69 (272)
Q Consensus 50 ~E~~~LR~~L~EKd~~i~~L 69 (272)
.++..++..|..=...+.+|
T Consensus 43 ~~v~~I~~~i~~i~~~v~~l 62 (180)
T 1s94_A 43 EQVEEIRAMIDKISDNVDAV 62 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444333333333
No 362
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=36.55 E-value=2.3e+02 Score=25.26 Aligned_cols=12 Identities=17% Similarity=0.271 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHH
Q 024140 49 ESEHSALRSQLA 60 (272)
Q Consensus 49 E~E~~~LR~~L~ 60 (272)
..++..||++|.
T Consensus 43 ~~~le~lr~~L~ 54 (273)
T 3s84_A 43 GDNLRELQQRLE 54 (273)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344555555554
No 363
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=36.51 E-value=2e+02 Score=24.57 Aligned_cols=45 Identities=18% Similarity=0.217 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 024140 73 IESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (272)
Q Consensus 73 ~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (272)
-..|+.+|..+=........+|..++..|......|.+.+..|+.
T Consensus 40 q~~lq~sl~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~ 84 (174)
T 2p22_A 40 QTVMQESIARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTA 84 (174)
T ss_dssp GTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444333344556788899999999999999999998887
No 364
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=36.30 E-value=22 Score=31.69 Aligned_cols=30 Identities=10% Similarity=0.276 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 024140 84 LGQAQADKERLSKENEALTNTVRKLQRDVS 113 (272)
Q Consensus 84 L~~a~ee~~kL~~E~~~La~TvKkL~rDva 113 (272)
.....++..+|++|+..+.+.+.+|.+++.
T Consensus 150 ~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~ 179 (250)
T 2ve7_C 150 YKSSADKMQQLNAAHQEALMKLERLEKEVD 179 (250)
T ss_dssp TTHHHHHHHHHHHHHHHHHHSCC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334445555555555555444444444433
No 365
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=36.28 E-value=2.2e+02 Score=24.95 Aligned_cols=13 Identities=38% Similarity=0.636 Sum_probs=6.6
Q ss_pred HHHHHHHHhhccc
Q 024140 116 EVFRKTLVQSLKD 128 (272)
Q Consensus 116 E~FKk~LmqSLq~ 128 (272)
+-..++|+.-|..
T Consensus 143 emi~k~l~~~L~k 155 (213)
T 4ani_A 143 EMVYRSLVDALKK 155 (213)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444555555543
No 366
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=35.91 E-value=1.3e+02 Score=23.73 Aligned_cols=10 Identities=30% Similarity=0.425 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 024140 62 KDSRIAELQS 71 (272)
Q Consensus 62 Kd~~i~~Lq~ 71 (272)
|...|.+|.+
T Consensus 21 kq~~id~lke 30 (94)
T 3jsv_C 21 KQELIDKLKE 30 (94)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 3333333333
No 367
>1wlo_A SUFE protein; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; NMR {Thermus thermophilus}
Probab=35.45 E-value=22 Score=29.02 Aligned_cols=46 Identities=26% Similarity=0.356 Sum_probs=36.8
Q ss_pred CCCChhHHHhcCCCCchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 024140 11 TFDLPEEVLQVLPSDPFEQLDVARKITSIAISTRVSDLESEHSALRSQLAE 61 (272)
Q Consensus 11 dF~lp~eil~vLP~DP~EQLdlarkIts~A~atRVs~LE~E~~~LR~~L~E 61 (272)
+-.=|+||+++=| |=|++|.|...++ .+|.+.|.+=+.++|.+..+
T Consensus 87 ~G~tp~eIl~~d~-~~~~~lGL~~~LS----psR~nGl~am~~~ik~~a~~ 132 (136)
T 1wlo_A 87 EGESPEAVLEVPP-GFYRGYGLEEFFT----PLRLRGLEAALLRLQAQVRK 132 (136)
T ss_dssp TTCCTTTTTSSCT-TTTTTTTSHHHHT----HHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHhCCH-HHHHHcCchhhcC----chHHHHHHHHHHHHHHHHHH
Confidence 4456899999888 7899999998777 57888888888888776543
No 368
>3rrr_B Fusion glycoprotein F0; six-helix bundle, membrane fusion, viral protein; HET: NAG; 2.82A {Human respiratory syncytial virus} PDB: 3rrt_B
Probab=35.28 E-value=2.1e+02 Score=27.49 Aligned_cols=62 Identities=19% Similarity=0.280 Sum_probs=46.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 024140 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (272)
Q Consensus 44 RVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (272)
+..+.+.+|..||+.+.+-.+.|.+|++=+..+-.+++ +.|+. =|+.|.-++.+|.++++-+
T Consensus 10 ~a~~Na~~I~~Lk~si~~TN~AV~~l~~~~~~~~~Av~-----~lQd~-----IN~~i~Pain~l~C~v~~~ 71 (374)
T 3rrr_B 10 KVLHLEGEVNKIKSALLSTNKAVVSLSNGVSVLTSKVL-----DLKNY-----IDKQLLPIVNKQSCSISNI 71 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH-----HHHTHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH-----HHHhhhhhhhhcchHhHHh
Confidence 56678999999999999999999999988887777765 22222 1455666677777776654
No 369
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=35.25 E-value=1.1e+02 Score=28.60 Aligned_cols=59 Identities=15% Similarity=0.185 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 024140 55 LRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (272)
Q Consensus 55 LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE 116 (272)
.|+.+.++.+.+ -.++..+...|+.--..+.+++..-.++-+.|..+|.+||+++.+.+
T Consensus 65 ~R~~vl~~a~~L---a~~~n~~~~~L~~~~~~~n~~i~~~V~~iN~l~~qIa~LN~qI~~~~ 123 (463)
T 2d4y_A 65 ARQALIGKAEGL---VNQFKTTDQYLRDQDKQVNIAIGSSVAQINNYAKQIANLNDQISRMT 123 (463)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 355555544332 22333333333322234444455555555555566666666655443
No 370
>4g63_A Cytosolic IMP-GMP specific 5'-nucleotidase; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.70A {Legionella pneumophila subsp} PDB: 2bde_A
Probab=35.11 E-value=29 Score=33.87 Aligned_cols=10 Identities=20% Similarity=0.278 Sum_probs=5.8
Q ss_pred hhhHHHHHHH
Q 024140 46 SDLESEHSAL 55 (272)
Q Consensus 46 s~LE~E~~~L 55 (272)
-+||.|+..+
T Consensus 325 ~EL~~Ei~~~ 334 (470)
T 4g63_A 325 EELGEEIASQ 334 (470)
T ss_dssp TTHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3567776543
No 371
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=35.04 E-value=4.3e+02 Score=27.96 Aligned_cols=40 Identities=20% Similarity=0.249 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHh-------hhHHHHHHHH-HHHHhhcccc
Q 024140 90 DKERLSKENEALTNTVRKLQ-------RDVSKLEVFR-KTLVQSLKDD 129 (272)
Q Consensus 90 e~~kL~~E~~~La~TvKkL~-------rDvaKLE~FK-k~LmqSLq~d 129 (272)
+.+.|.+.+..-.+..|+++ ++++..|+=| +++|.+|+.|
T Consensus 758 el~~~~~~~~~el~~~~~~~ele~~k~~~la~ie~~kf~~~v~aig~~ 805 (861)
T 2zuo_A 758 ELERVKKVREMELIYARAQLELEVSKAQQLANVEAKKFKEMTEALGPG 805 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhChH
Confidence 33444555555555555543 5666666644 6778888766
No 372
>3ck6_A Putative membrane transport protein; APC91421.1, ZNTB, cytoplasmic domain, PSI-2, protein structure initiative; HET: MSE; 1.90A {Vibrio parahaemolyticus rimd 2210633} PDB: 3bhc_A*
Probab=34.91 E-value=1.7e+02 Score=24.46 Aligned_cols=18 Identities=17% Similarity=0.014 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 024140 64 SRIAELQSQIESIYSSLS 81 (272)
Q Consensus 64 ~~i~~Lq~r~s~le~~l~ 81 (272)
..|+.|++++-.+-..+.
T Consensus 171 ~~l~~lrr~l~~lrr~l~ 188 (252)
T 3ck6_A 171 YNHIAAQKALISIKRFIR 188 (252)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345666666665555554
No 373
>1fzc_B Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_B* 1fza_B* 1fze_B* 1fzf_B* 1fzg_B* 1n86_B* 1n8e_B 2h43_B* 2hlo_B* 2hod_B* 2hpc_B* 2q9i_B* 2xnx_B 2xny_B 3e1i_B* 2z4e_B* 2oyh_B* 1ltj_B* 1rf0_B* 1lt9_B* ...
Probab=34.78 E-value=19 Score=33.50 Aligned_cols=10 Identities=10% Similarity=-0.091 Sum_probs=6.4
Q ss_pred ccccCCCCcc
Q 024140 244 LSSVHSSHSS 253 (272)
Q Consensus 244 ~~~~~ss~~S 253 (272)
-|||..=+.+
T Consensus 268 gWWy~~C~~s 277 (328)
T 1fzc_B 268 GWWYNRCHAA 277 (328)
T ss_dssp CBCCSSBCSB
T ss_pred CEeCCCCCCC
Confidence 4688765555
No 374
>1lj2_A NSP3-C, nonstructural RNA-binding protein 34, NS34, NCVP4; NSP3, homodimer, translation, mRNA, closed loop, coiled coil; 2.38A {Simian rotavirus A} SCOP: h.1.13.2
Probab=34.76 E-value=1.8e+02 Score=23.49 Aligned_cols=70 Identities=26% Similarity=0.340 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHH------------HHHHHHHHHHHHHHhhh
Q 024140 58 QLAEKDSRIAELQSQIESIYSSLSDKLGQAQ--------------ADKERL------------SKENEALTNTVRKLQRD 111 (272)
Q Consensus 58 ~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~--------------ee~~kL------------~~E~~~La~TvKkL~rD 111 (272)
-++.-.++|.+||++...+|..|+.|+.... |-+... ..--+.+..-+++|--|
T Consensus 7 vIaqQQ~~In~lq~~~~klE~dlq~ki~slisSiEw~l~Smel~de~K~DieQqLnsid~Inp~~aiddiE~~IrnlI~D 86 (110)
T 1lj2_A 7 VIPQQQAHIAELQVYNNKLERDLQNKIGSLTSSIEWYLRSMELDPEIKADIEQQINSIDAINPLHAFDDLESVIRNLISD 86 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTTSCSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHhccccccCcchhHhHHHHHHHHHHHH
Confidence 3556677888888888888888884433221 111222 22345677777888888
Q ss_pred HHHHHHHHHHHHhhcc
Q 024140 112 VSKLEVFRKTLVQSLK 127 (272)
Q Consensus 112 vaKLE~FKk~LmqSLq 127 (272)
.+++=-+=|-|++.++
T Consensus 87 yd~~flmfkgL~~~~n 102 (110)
T 1lj2_A 87 YDKLFLMFKGLIQRSN 102 (110)
T ss_dssp HHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHcC
Confidence 8887776677777654
No 375
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=34.63 E-value=1.4e+02 Score=22.06 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=13.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 024140 44 RVSDLESEHSALRSQLAEKDSRIAELQ 70 (272)
Q Consensus 44 RVs~LE~E~~~LR~~L~EKd~~i~~Lq 70 (272)
+.+.|..++..|..++..+...+.+++
T Consensus 9 ~f~~lq~~~~~l~~q~~~l~~~~~e~~ 35 (107)
T 1fxk_A 9 QFQQLQQQAQAISVQKQTVEMQINETQ 35 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555444444443
No 376
>1ni7_A ER75, hypothetical protein YGDK; RD-structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Escherichia coli} SCOP: d.224.1.1
Probab=34.60 E-value=7 Score=32.89 Aligned_cols=51 Identities=14% Similarity=0.182 Sum_probs=40.1
Q ss_pred CCCChhHHHhcCCCCchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 024140 11 TFDLPEEVLQVLPSDPFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSR 65 (272)
Q Consensus 11 dF~lp~eil~vLP~DP~EQLdlarkIts~A~atRVs~LE~E~~~LR~~L~EKd~~ 65 (272)
+-.=|+||+++=|.|=|+||.|...++. +|.+.|.+=+.++|.+..+.-+|
T Consensus 100 ~G~tp~eIl~~d~~~f~~~lGL~~~LSp----sR~NGl~am~~~ik~~a~~~~~~ 150 (155)
T 1ni7_A 100 EGKTAAELQAQSPLALFDELGLRAQLSA----SRSQGLNALSEAIIAATKQVLEH 150 (155)
T ss_dssp TTCCHHHHHHSCTHHHHHHHTSSSSSCH----HHHHHHHHHHHHHHHHHHHHHC-
T ss_pred cCCCHHHHHhCCHHHHHHHcCchhhcCc----hHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456999999988888999999887764 78899988888888877665443
No 377
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=34.54 E-value=1.7e+02 Score=29.52 Aligned_cols=6 Identities=33% Similarity=0.617 Sum_probs=2.7
Q ss_pred CCCCCC
Q 024140 201 PPGSPP 206 (272)
Q Consensus 201 P~gsP~ 206 (272)
|+|+-|
T Consensus 596 p~GtGK 601 (854)
T 1qvr_A 596 PTGVGK 601 (854)
T ss_dssp CSSSSH
T ss_pred CCCCCH
Confidence 444444
No 378
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=34.41 E-value=1.5e+02 Score=22.42 Aligned_cols=24 Identities=8% Similarity=0.228 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 50 SEHSALRSQLAEKDSRIAELQSQI 73 (272)
Q Consensus 50 ~E~~~LR~~L~EKd~~i~~Lq~r~ 73 (272)
.+|..+|..|..=...+.+|++..
T Consensus 12 ~~v~~I~~~i~~i~~~v~~l~~~~ 35 (127)
T 1ez3_A 12 EQVEEIRGFIDKIAENVEEVKRKH 35 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555554444444444333
No 379
>3tso_C RAB11 family-interacting protein 2; RAS GTPase fold (RAB25), vesicle trafficking, endosome, PROT transport; HET: GNP; 1.80A {Homo sapiens} PDB: 2k6s_A
Probab=34.23 E-value=66 Score=24.48 Aligned_cols=30 Identities=27% Similarity=0.386 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 48 LESEHSALRSQLAEKDSRIAELQSQIESIY 77 (272)
Q Consensus 48 LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le 77 (272)
|-..+-.++..|.+|+.+|.|||+=+..|=
T Consensus 19 Li~l~lk~~~~l~~k~~~v~eLEdYID~LL 48 (75)
T 3tso_C 19 VLQELVKHKELLRRKDTHIRELEDYIDNLL 48 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777888999999999987666543
No 380
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=34.08 E-value=2.2e+02 Score=25.74 Aligned_cols=43 Identities=12% Similarity=0.199 Sum_probs=27.4
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Q 024140 39 IAISTRVSDLESEHSALRSQLAEK-----DSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~L~EK-----d~~i~~Lq~r~s~le~~l~ 81 (272)
-.|..-+..++.++..|-+++.++ -+.|+.|++++..+-+.+.
T Consensus 191 d~y~~~l~~l~~~id~lE~~v~~~~~~~~l~~l~~lrr~l~~lrr~l~ 238 (363)
T 2iub_A 191 DDYFVLLEKIDDEIDVLEEEVLERPEKETVQRTHQLKRNLVELRKTIW 238 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 345555667777777777666532 3456777777777766665
No 381
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=34.05 E-value=27 Score=21.80 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHH
Q 024140 93 RLSKENEALTNTVRKLQRDVSKLE 116 (272)
Q Consensus 93 kL~~E~~~La~TvKkL~rDvaKLE 116 (272)
.|.=||+.|.+.+-.|...++.|+
T Consensus 4 alefendaleqkiaalkqkiaslk 27 (28)
T 3ra3_A 4 ALEFENDALEQKIAALKQKIASLK 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhccHHHHHHHHHHHHHHHHhc
Confidence 466688888888887777766653
No 382
>2y7c_A Type-1 restriction enzyme ecoki specificity prote; transferase; 18.00A {Escherichia coli} PDB: 2y7h_A*
Probab=34.01 E-value=69 Score=28.38 Aligned_cols=21 Identities=14% Similarity=0.297 Sum_probs=15.6
Q ss_pred HHHhhhHHHHHHHHHHHHhhc
Q 024140 106 RKLQRDVSKLEVFRKTLVQSL 126 (272)
Q Consensus 106 KkL~rDvaKLE~FKk~LmqSL 126 (272)
.++++-.+.|+.||+.||+-+
T Consensus 184 ~~~~~~~~~l~~~k~~ll~~~ 204 (464)
T 2y7c_A 184 ARFEQIPQILKRFRQAVLGGA 204 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555677888999999874
No 383
>2qm4_A Non-homologous END-joining factor 1; XRCC4 like factor, homodimer, beta-sandwich, coiled-coil, recombination; HET: MSE; 2.30A {Homo sapiens} PDB: 3sr2_C* 2r9a_A 3q4f_E* 3rwr_D*
Probab=33.98 E-value=40 Score=30.00 Aligned_cols=39 Identities=21% Similarity=0.229 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 32 VARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQS 71 (272)
Q Consensus 32 larkIts~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~ 71 (272)
|.+.|+-- +-.=+..|+.++..|-..|.+||.+|.+++.
T Consensus 133 l~~~LilP-Ll~~~~~l~~q~~~L~~lL~~KD~eI~~y~~ 171 (235)
T 2qm4_A 133 VSQHLIRP-LMGMSLALQCQVRELATLLHMKDLEIQDYQE 171 (235)
T ss_dssp HHHHTHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444432 2334568899999999999999999999653
No 384
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=33.58 E-value=66 Score=22.61 Aligned_cols=17 Identities=35% Similarity=0.514 Sum_probs=12.8
Q ss_pred hhhhhHHHHHHHHHHHH
Q 024140 44 RVSDLESEHSALRSQLA 60 (272)
Q Consensus 44 RVs~LE~E~~~LR~~L~ 60 (272)
=+..||.+-..||.||-
T Consensus 14 ~l~~LEkqF~~LkEqlY 30 (49)
T 2xus_A 14 EMLDLEKQFSELKEKLF 30 (49)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35678888888888876
No 385
>3t97_B Nuclear pore complex protein NUP54; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=33.43 E-value=96 Score=22.91 Aligned_cols=36 Identities=17% Similarity=0.289 Sum_probs=28.7
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIY 77 (272)
Q Consensus 42 atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le 77 (272)
+.|+..++.|+..|+.+.+.-...|.+.+.|+..|-
T Consensus 9 ~~~Ld~i~~el~eLq~~~~~~~aki~e~krkl~eLs 44 (65)
T 3t97_B 9 QTRLDIISEDISELQKNQTTTMAKIAQYKRKLMDLS 44 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 456777888899999888888888888888776554
No 386
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=33.35 E-value=4.2e+02 Score=27.33 Aligned_cols=42 Identities=17% Similarity=0.246 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 024140 88 QADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (272)
Q Consensus 88 ~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq~d 129 (272)
.-|..||.+|.+.|...++.|+.-|+.-+.+++.+..-|.+.
T Consensus 401 ~le~~kl~~E~~eL~~~i~~l~~iL~~~~~l~~~i~~EL~~i 442 (716)
T 1zvu_A 401 KLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQAD 442 (716)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 456789999999999999999999888888877776666654
No 387
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=33.26 E-value=1.9e+02 Score=24.02 Aligned_cols=8 Identities=25% Similarity=0.106 Sum_probs=3.8
Q ss_pred hhhHHHHH
Q 024140 27 FEQLDVAR 34 (272)
Q Consensus 27 ~EQLdlar 34 (272)
.+|.+.|.
T Consensus 15 ~~~~~~al 22 (171)
T 2p2u_A 15 IRQAEGAL 22 (171)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34455543
No 388
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=33.07 E-value=84 Score=23.82 Aligned_cols=33 Identities=15% Similarity=0.471 Sum_probs=16.0
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIES 75 (272)
Q Consensus 43 tRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~ 75 (272)
..|..||..|..++.....-...|.+||.++..
T Consensus 8 nsVk~~eT~iaa~~~ev~t~~~~l~~~e~~vqa 40 (74)
T 1avy_A 8 NKIKAIETDIASVRQEVNTAKGNISSLQGDVQA 40 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhcccccchhhhheeeccccchhhhhhhhhHH
Confidence 345666666666665553333333333333333
No 389
>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae}
Probab=33.06 E-value=1.6e+02 Score=26.45 Aligned_cols=29 Identities=24% Similarity=0.253 Sum_probs=21.9
Q ss_pred HHHHHHhhhHHHHHHHHHHHHhhcccccc
Q 024140 103 NTVRKLQRDVSKLEVFRKTLVQSLKDDED 131 (272)
Q Consensus 103 ~TvKkL~rDvaKLE~FKk~LmqSLq~d~~ 131 (272)
..-|+|+.=..|...|+..|..=|.+|++
T Consensus 171 ~~~k~L~~~~~kv~~vr~~leelLddDeD 199 (261)
T 3rkg_A 171 IKSKDLTLFYQKTLLIRDLLDELLENDDD 199 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 34456777777888888888888888876
No 390
>1yvl_A Signal transducer and activator of transcription 1-alpha/beta; signaling protein; HET: PTR; 3.00A {Homo sapiens}
Probab=33.04 E-value=2.6e+02 Score=28.69 Aligned_cols=44 Identities=23% Similarity=0.255 Sum_probs=32.1
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 27 FEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQ 72 (272)
Q Consensus 27 ~EQLdlarkIts~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r 72 (272)
..|.+|..++ ..+..+|..+|.++..|.+.-.+-+=..++++.+
T Consensus 137 ~~~~~i~~~v--~~lr~~~q~~e~~ik~Le~~Qe~f~~~y~~~~~~ 180 (683)
T 1yvl_A 137 DKQKELDSKV--RNVKDKVMCIEHEIKSLEDLQDEYDFKCKTLQNR 180 (683)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3466666555 4677889999999999988877777666666544
No 391
>3a1q_C Ubiquitin interaction motif-containing protein 1; protein complex, cytoplasm, nucleus, phosphoprotein, UBL conjugation, transcription regulation; 2.20A {Mus musculus}
Probab=32.93 E-value=1.1e+02 Score=21.15 Aligned_cols=10 Identities=40% Similarity=0.394 Sum_probs=5.7
Q ss_pred hhhHHHHHHH
Q 024140 27 FEQLDVARKI 36 (272)
Q Consensus 27 ~EQLdlarkI 36 (272)
.|||.||-|.
T Consensus 7 EEq~ALA~rm 16 (45)
T 3a1q_C 7 EEQFALALKM 16 (45)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4677666443
No 392
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=32.87 E-value=2.4e+02 Score=24.37 Aligned_cols=20 Identities=15% Similarity=0.406 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024140 65 RIAELQSQIESIYSSLSDKL 84 (272)
Q Consensus 65 ~i~~Lq~r~s~le~~l~~rL 84 (272)
++.+|++++.-+-.+|..+|
T Consensus 155 ~veelk~~l~P~~ee~r~kl 174 (243)
T 2a01_A 155 HVDALRTHLAPYSDELRQRL 174 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHH
Confidence 34444445444444444333
No 393
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=32.66 E-value=62 Score=23.65 Aligned_cols=27 Identities=11% Similarity=0.186 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 024140 88 QADKERLSKENEALTNTVRKLQRDVSK 114 (272)
Q Consensus 88 ~ee~~kL~~E~~~La~TvKkL~rDvaK 114 (272)
.+++..|..|++.|......|...|..
T Consensus 53 ~~~~~~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 53 RRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444443
No 394
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=32.58 E-value=3.6e+02 Score=26.68 Aligned_cols=42 Identities=14% Similarity=0.269 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 024140 88 QADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (272)
Q Consensus 88 ~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq~d 129 (272)
..+..||.+|.+.|...++.|..-|+.-+.+++-+..-|.+-
T Consensus 453 ~~e~~kl~~E~~~l~~ei~~l~~iL~~~~~~~~~i~~el~~i 494 (514)
T 2inr_A 453 NTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEI 494 (514)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 457889999999999999999998888777776666666544
No 395
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=31.87 E-value=1.7e+02 Score=22.30 Aligned_cols=25 Identities=28% Similarity=0.304 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHH
Q 024140 66 IAELQSQIESIYSSLS---DKLGQAQAD 90 (272)
Q Consensus 66 i~~Lq~r~s~le~~l~---~rL~~a~ee 90 (272)
|.+||+-+...|.+|. -||+.+.+.
T Consensus 7 l~eLq~e~~~~E~QL~~A~QKLkdA~~~ 34 (78)
T 2ic6_A 7 LKEVQDNITLHEQRLVTTRQKLKDAERA 34 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777666 455555543
No 396
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=31.73 E-value=2.2e+02 Score=23.64 Aligned_cols=17 Identities=18% Similarity=0.407 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024140 64 SRIAELQSQIESIYSSL 80 (272)
Q Consensus 64 ~~i~~Lq~r~s~le~~l 80 (272)
+.|++|+..+..++..+
T Consensus 23 r~ia~l~r~~~~i~~~~ 39 (171)
T 2p2u_A 23 AEIATIDRKVGEIEAQM 39 (171)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555555555555443
No 397
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=31.72 E-value=3.1e+02 Score=26.59 Aligned_cols=20 Identities=25% Similarity=0.147 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024140 61 EKDSRIAELQSQIESIYSSL 80 (272)
Q Consensus 61 EKd~~i~~Lq~r~s~le~~l 80 (272)
+.|+...++.+..+.||.-+
T Consensus 524 ~~d~~~~~~~~~~n~~e~~~ 543 (605)
T 4b9q_A 524 EADRKCEELVQTRNQGDHLL 543 (605)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555443
No 398
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=31.14 E-value=62 Score=26.20 Aligned_cols=6 Identities=0% Similarity=0.401 Sum_probs=2.1
Q ss_pred HHHHHH
Q 024140 72 QIESIY 77 (272)
Q Consensus 72 r~s~le 77 (272)
++..++
T Consensus 15 ~i~~l~ 20 (122)
T 3viq_A 15 EVRNLQ 20 (122)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 399
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=31.10 E-value=58 Score=26.93 Aligned_cols=13 Identities=31% Similarity=0.217 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHH
Q 024140 68 ELQSQIESIYSSL 80 (272)
Q Consensus 68 ~Lq~r~s~le~~l 80 (272)
.|+.|+..++..+
T Consensus 4 ~l~~~~~~~~~~~ 16 (192)
T 2gkw_A 4 LLESQLSRHDQML 16 (192)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444433
No 400
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=31.03 E-value=2e+02 Score=22.76 Aligned_cols=24 Identities=29% Similarity=0.321 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHH
Q 024140 66 IAELQSQIESIYSSLS---DKLGQAQA 89 (272)
Q Consensus 66 i~~Lq~r~s~le~~l~---~rL~~a~e 89 (272)
|.+||+-+...|.+|. -||+.|.+
T Consensus 7 i~eLq~e~~~~E~QL~~A~QKLkdA~~ 33 (96)
T 2ic9_A 7 LKEVQDNITLHEQRLVTTRQKLKDAER 33 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666 45555544
No 401
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=30.70 E-value=1.7e+02 Score=21.95 Aligned_cols=17 Identities=29% Similarity=0.524 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHhhhHHH
Q 024140 98 NEALTNTVRKLQRDVSK 114 (272)
Q Consensus 98 ~~~La~TvKkL~rDvaK 114 (272)
|..+.+.+..|.+||.-
T Consensus 44 R~~~E~d~~~LrkdvD~ 60 (86)
T 3swk_A 44 REEAENTLQSFRQDVDN 60 (86)
T ss_dssp HHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHhhHHH
Confidence 34444555555555543
No 402
>4aj5_K Spindle and kinetochore-associated protein 2; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=30.62 E-value=2.3e+02 Score=23.33 Aligned_cols=27 Identities=19% Similarity=0.320 Sum_probs=18.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 47 DLESEHSALRSQLAEKDSRIAELQSQI 73 (272)
Q Consensus 47 ~LE~E~~~LR~~L~EKd~~i~~Lq~r~ 73 (272)
.+|.++.+|-.-...-+.-+.-+|.|+
T Consensus 2 ~me~avdkLe~mFqKA~sDLdyiq~RL 28 (123)
T 4aj5_K 2 HMEAEVDKLELMFQKAESDLDYIQYRL 28 (123)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 467777777777777777777777664
No 403
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=30.42 E-value=2.1e+02 Score=23.61 Aligned_cols=71 Identities=20% Similarity=0.347 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 024140 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLV 123 (272)
Q Consensus 45 Vs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~Lm 123 (272)
..+|..+...||.+| ..++.+++.|+.-+=..|+ ....+....|...-.-++.-+++-.+ .++|.||.+|+
T Consensus 73 ~~~l~~~~~~Lr~~l---~kdlee~r~~l~P~~~e~~---~~~~~~~e~lr~~l~Py~~el~~~~~--~~~e~Lr~~L~ 143 (185)
T 3r2p_A 73 WDNLEKETEGLRQEM---SKDLEEVKAKVQPYLDDFQ---KKWQEEMELYRQKVEPLRAELQEGAR--QKLHELQEKLS 143 (185)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHTTTTTTSH
T ss_pred HHHHHHHHHHHHHHH---hccHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHH
No 404
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=30.42 E-value=88 Score=27.13 Aligned_cols=38 Identities=18% Similarity=0.388 Sum_probs=20.8
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYS 78 (272)
Q Consensus 41 ~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~ 78 (272)
|-.|+-.||.|-=.|-.++..++-.|.+|..||+.|..
T Consensus 70 Lh~~I~~LEeEKYDlE~kvkkqdyEI~dL~~rV~DLrG 107 (180)
T 1j1e_C 70 LHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLRG 107 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhhHHHHHHhcchhHHHHHHHHHHHHh
Confidence 34455555555555555555555556666555555543
No 405
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=30.40 E-value=2.3e+02 Score=25.27 Aligned_cols=41 Identities=27% Similarity=0.265 Sum_probs=22.7
Q ss_pred HHHhhhhhHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Q 024140 41 ISTRVSDLESEHSALRSQLA-----EKDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 41 ~atRVs~LE~E~~~LR~~L~-----EKd~~i~~Lq~r~s~le~~l~ 81 (272)
+..-+..+|.++..|-+++- +--+.|..|++.+..+.+.+.
T Consensus 169 ~~~~l~~l~~~i~~lE~~l~~~~~~~~l~~l~~lrr~l~~lrr~l~ 214 (339)
T 4ev6_A 169 YSRILMNLEDELEELEDKLLAGYDREVMEKILGLRKTLVYFHKSLI 214 (339)
T ss_dssp HHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhh
Confidence 44445556666666655543 223456666666666666554
No 406
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=30.36 E-value=49 Score=25.83 Aligned_cols=21 Identities=33% Similarity=0.392 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 024140 89 ADKERLSKENEALTNTVRKLQ 109 (272)
Q Consensus 89 ee~~kL~~E~~~La~TvKkL~ 109 (272)
++..+|.+|...|...++.|.
T Consensus 14 ~~~~~l~~~i~~lkeel~~L~ 34 (109)
T 2wg5_A 14 DKVEELLSKNYHLENEVARLR 34 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 333344444444444444444
No 407
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=30.33 E-value=35 Score=27.24 Aligned_cols=12 Identities=33% Similarity=0.456 Sum_probs=10.1
Q ss_pred chhhHHHHHHHH
Q 024140 26 PFEQLDVARKIT 37 (272)
Q Consensus 26 P~EQLdlarkIt 37 (272)
--|||.||+.|.
T Consensus 21 TaeQ~rLAq~i~ 32 (104)
T 1wj7_A 21 TAEQIRLAQMIS 32 (104)
T ss_dssp SHHHHHHHHHHH
T ss_pred CHHHHHHHHHHh
Confidence 469999999886
No 408
>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD, protein binding; HET: MSE; 1.85A {Mus musculus}
Probab=29.94 E-value=3e+02 Score=24.59 Aligned_cols=50 Identities=20% Similarity=0.281 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 024140 30 LDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIA-ELQSQIESIYSSLS 81 (272)
Q Consensus 30 LdlarkIts~A~atRVs~LE~E~~~LR~~L~EKd~~i~-~Lq~r~s~le~~l~ 81 (272)
||--.||+.+|..+|...- |++..=-++.+.-+.|. .|+.-...|-..|.
T Consensus 58 ~Da~qKvad~A~~s~g~s~--elG~~L~~i~~~hr~ie~~l~~~~k~~~~eli 108 (253)
T 2d1l_A 58 LDAFQKVADMATNTRGGTR--EIGSALTRMCMRHRSIEAKLRQFSSALIDCLI 108 (253)
T ss_dssp HHHHHHHHHHHHTSSTHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHcccCCcchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667777766663211 45554455555544443 33333333433333
No 409
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=29.89 E-value=21 Score=29.79 Aligned_cols=23 Identities=17% Similarity=0.325 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHH---HHHHHhhhHH
Q 024140 91 KERLSKENEALTN---TVRKLQRDVS 113 (272)
Q Consensus 91 ~~kL~~E~~~La~---TvKkL~rDva 113 (272)
..+-..||..|+. .-.+|-.|..
T Consensus 75 r~~~~eEKrkLAqLQ~AY~~LfqeYd 100 (130)
T 3cl3_D 75 RQAASEEKRKLAQLQVAYHQLFQEYD 100 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555543 3344444443
No 410
>3k8w_A Flagellin homolog; flagellum, structural protein, bacterial flagellu; 1.70A {Sphingomonas SP} PDB: 2zbi_A 3k8v_A
Probab=29.86 E-value=3.5e+02 Score=25.27 Aligned_cols=86 Identities=16% Similarity=0.236 Sum_probs=37.2
Q ss_pred chhhHHHHHHHHH----HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH----
Q 024140 26 PFEQLDVARKITS----IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERL---- 94 (272)
Q Consensus 26 P~EQLdlarkIts----~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL---- 94 (272)
-.+||--+.||.+ =|...+..+|..++..|.+-...-..-+.-|+ ..|.+|. .-|.++++-..+-
T Consensus 8 sqeqLSSGkRInsaSDDPag~aia~~L~sqi~~l~Q~~rN~~da~S~Lq----tAE~AL~~i~diLqrmRELaVQAaNgT 83 (326)
T 3k8w_A 8 SLQRLSSGLRINSAKDDAAGLAISDRMTAQIKGLTQAQRNANDGISLAQ----TAEGALGEISNNLQRIRELAVQASNGT 83 (326)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHTSTT
T ss_pred HHHHHhhcCccCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3578888999983 34566777778888888777655554444443 3444443 2222222222111
Q ss_pred --HHHHHHHHHHHHHHhhhHHHH
Q 024140 95 --SKENEALTNTVRKLQRDVSKL 115 (272)
Q Consensus 95 --~~E~~~La~TvKkL~rDvaKL 115 (272)
..+|..++..++.|..++..+
T Consensus 84 ~s~~DR~aIa~Ei~qL~~eI~~i 106 (326)
T 3k8w_A 84 NTQTDRDALQAEVTQLQSEIQRV 106 (326)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Confidence 245555665555555544433
No 411
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=29.67 E-value=83 Score=20.59 Aligned_cols=6 Identities=17% Similarity=0.512 Sum_probs=2.4
Q ss_pred hhhhHH
Q 024140 45 VSDLES 50 (272)
Q Consensus 45 Vs~LE~ 50 (272)
|++||.
T Consensus 2 MnQLEd 7 (33)
T 3c3g_A 2 MKXIEX 7 (33)
T ss_dssp HHHHHH
T ss_pred ccHHHH
Confidence 334443
No 412
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=29.31 E-value=2.5e+02 Score=29.54 Aligned_cols=54 Identities=6% Similarity=-0.008 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHH---HHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhH--HHHHHHHH
Q 024140 67 AELQSQIESIYSSLS---DKLG-QAQADKERLSKENEALTNTVRKLQRDV--SKLEVFRK 120 (272)
Q Consensus 67 ~~Lq~r~s~le~~l~---~rL~-~a~ee~~kL~~E~~~La~TvKkL~rDv--aKLE~FKk 120 (272)
..|.+++..+|..|. +++. ...+...+|.+++=--+..|.+-..+| .+.+.+|.
T Consensus 914 qallkKhea~e~dl~a~e~ri~~~l~~~a~~L~~~~y~~~~~I~~R~~~l~~~~W~~L~~ 973 (995)
T 2ycu_A 914 QAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKS 973 (995)
T ss_dssp HHHHHHHHHHHHHHHHTTTCSCSSHHHHHHHHTTTHHHHHHHHHHHHTHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 346678888888887 5665 677777778777766666666666665 46666653
No 413
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=29.18 E-value=2.1e+02 Score=22.55 Aligned_cols=15 Identities=20% Similarity=0.445 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHH
Q 024140 63 DSRIAELQSQIESIY 77 (272)
Q Consensus 63 d~~i~~Lq~r~s~le 77 (272)
+.+++.|++++..|-
T Consensus 17 e~e~~~l~~~~~el~ 31 (125)
T 1joc_A 17 EGEIEKLQTKVLELQ 31 (125)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHH
Confidence 334444444444443
No 414
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=29.17 E-value=51 Score=22.79 Aligned_cols=17 Identities=12% Similarity=0.348 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024140 64 SRIAELQSQIESIYSSL 80 (272)
Q Consensus 64 ~~i~~Lq~r~s~le~~l 80 (272)
..|.+|+++|..|+..|
T Consensus 49 ~~~~~Le~ri~~Le~~l 65 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTL 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445555555555444
No 415
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=29.10 E-value=1.7e+02 Score=21.89 Aligned_cols=17 Identities=35% Similarity=0.505 Sum_probs=7.8
Q ss_pred HhhhhhHHHHHHHHHHH
Q 024140 43 TRVSDLESEHSALRSQL 59 (272)
Q Consensus 43 tRVs~LE~E~~~LR~~L 59 (272)
.|...|=.-...||..+
T Consensus 16 ~RR~~ln~~f~~Lr~~v 32 (88)
T 1nkp_A 16 QRRNELKRSFFALRDQI 32 (88)
T ss_dssp HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHC
Confidence 34444444444555443
No 416
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=28.96 E-value=79 Score=24.55 Aligned_cols=18 Identities=22% Similarity=0.246 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 024140 89 ADKERLSKENEALTNTVR 106 (272)
Q Consensus 89 ee~~kL~~E~~~La~TvK 106 (272)
.+.++|..|+..+..-+.
T Consensus 62 ~e~~~L~~e~~~~~~e~d 79 (90)
T 2wt7_B 62 QQVEQLKQEVSRLARERD 79 (90)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 417
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=28.90 E-value=2.6e+02 Score=23.42 Aligned_cols=28 Identities=11% Similarity=0.299 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 024140 91 KERLSKENEALTNTVRKLQRDVSKLEVF 118 (272)
Q Consensus 91 ~~kL~~E~~~La~TvKkL~rDvaKLE~F 118 (272)
..+..+|++.+....+.|..++..++.|
T Consensus 79 q~q~~~ek~~r~e~k~~l~~ql~qv~~L 106 (150)
T 4dci_A 79 QQQVAGKRSELEEQKRNLLQQQAQVREL 106 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3567778888888888888777777665
No 418
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=28.80 E-value=76 Score=27.82 Aligned_cols=22 Identities=45% Similarity=0.620 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024140 82 DKLGQAQADKERLSKENEALTN 103 (272)
Q Consensus 82 ~rL~~a~ee~~kL~~E~~~La~ 103 (272)
++......+|.+|++||+.|..
T Consensus 161 ~~i~~L~a~N~hLqkENeRL~~ 182 (186)
T 3q4f_C 161 DTIAENQAKNEHLQKENERLLR 182 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777888888999888864
No 419
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=28.72 E-value=1.9e+02 Score=21.96 Aligned_cols=22 Identities=18% Similarity=0.199 Sum_probs=10.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHH
Q 024140 45 VSDLESEHSALRSQLAEKDSRI 66 (272)
Q Consensus 45 Vs~LE~E~~~LR~~L~EKd~~i 66 (272)
+..||.=+.+|+.-+.||....
T Consensus 26 le~Lee~leKl~~VveERree~ 47 (86)
T 3nr7_A 26 LETLEEMLEKLEVVVNERREEE 47 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555554444443
No 420
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=28.70 E-value=1.9e+02 Score=21.76 Aligned_cols=68 Identities=12% Similarity=0.230 Sum_probs=39.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 024140 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLV 123 (272)
Q Consensus 44 RVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~Lm 123 (272)
++.++..|+...+..+.+-=+.+-+=. +||....++-+.|+.+=.....+.++|+|.. -.+++|-.++
T Consensus 6 ~l~~vq~ev~evk~iM~~NI~kvL~Rg-----------ekL~~L~~kt~~L~~~s~~F~~~A~~l~rkm-wwkn~K~~ii 73 (91)
T 3hd7_A 6 RLQQTQAQVDEVVDIMRVNVDKVLERD-----------QKLSELDDRADALQAGASQFETSAAKLKRKY-WWKNLKMMII 73 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcc-----------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 556666666666665544322222222 4444555666677777777778888888764 4555654443
No 421
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=28.67 E-value=2.3e+02 Score=22.75 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024140 60 AEKDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 60 ~EKd~~i~~Lq~r~s~le~~l~ 81 (272)
.+||..|..|+..+..|-.+|.
T Consensus 11 d~rD~~Ie~Lkreie~lk~ele 32 (120)
T 3i00_A 11 DEKDHLIERLYREISGLKAQLE 32 (120)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888888777777765
No 422
>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex, cytokine activation, complex (transcription factor/DNA), transcription/DNA complex; HET: DNA PTR; 2.25A {Mus musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A
Probab=28.59 E-value=1.2e+02 Score=30.72 Aligned_cols=44 Identities=23% Similarity=0.261 Sum_probs=31.4
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 27 FEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQ 72 (272)
Q Consensus 27 ~EQLdlarkIts~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r 72 (272)
..|++|-.++ ..+..+|..+|.++..|.+.-.+=+=..++++.+
T Consensus 13 ~k~~ei~~~v--~~lr~~~q~~e~~ik~Le~~Qe~f~~~yk~~q~~ 56 (596)
T 1bg1_A 13 EKQQMLEQHL--QDVRKRVQDLEQKMKVVENLQDDFDFNYKTLKSQ 56 (596)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhh
Confidence 4667775554 4678899999999999988877755555555544
No 423
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=28.52 E-value=1.8e+02 Score=21.64 Aligned_cols=32 Identities=9% Similarity=0.219 Sum_probs=21.1
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 024140 39 IAISTRVSDLESEHSALRSQLAEKDSRIAELQ 70 (272)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq 70 (272)
..+-.++..|..++..|..++.|=+..+.+|+
T Consensus 16 ~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~ 47 (117)
T 2zqm_A 16 ESYQQQLQLVVQQKQKVQLELTEAKKALDEIE 47 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777777776666666664
No 424
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=28.22 E-value=1.5e+02 Score=27.18 Aligned_cols=55 Identities=13% Similarity=0.217 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 024140 63 DSRIAELQSQIESIYSSLSDKLGQAQAD---KERLSKENEALTNTVRKLQRDVSKLEVF 118 (272)
Q Consensus 63 d~~i~~Lq~r~s~le~~l~~rL~~a~ee---~~kL~~E~~~La~TvKkL~rDvaKLE~F 118 (272)
++-+..|++++..|+..+. ++...+++ ..|..+....|.+++..+.+.+...+.|
T Consensus 246 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (426)
T 1lrz_A 246 DEYIKELNEERDILNKDLN-KALKDIEKRPENKKAHNKRDNLQQQLDANEQKIEEGKRL 303 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHhhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666665555553 22222222 2455566666777777777766666555
No 425
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=28.21 E-value=1.7e+02 Score=26.94 Aligned_cols=44 Identities=16% Similarity=0.189 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHH-------------HHHHHHHhhhHHHHHHHHHHHHhhcc
Q 024140 83 KLGQAQADKERLSKENEAL-------------TNTVRKLQRDVSKLEVFRKTLVQSLK 127 (272)
Q Consensus 83 rL~~a~ee~~kL~~E~~~L-------------a~TvKkL~rDvaKLE~FKk~LmqSLq 127 (272)
.|....++.++|.++.+.| .+.++.|..+++.+|.-... ++.|.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~-~~~~~ 304 (426)
T 1lrz_A 248 YIKELNEERDILNKDLNKALKDIEKRPENKKAHNKRDNLQQQLDANEQKIEE-GKRLQ 304 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCcccHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 3444555555555555555 46667777777777665443 44443
No 426
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=28.14 E-value=1.6e+02 Score=20.76 Aligned_cols=17 Identities=29% Similarity=0.522 Sum_probs=9.3
Q ss_pred HhhhhhHHHHHHHHHHH
Q 024140 43 TRVSDLESEHSALRSQL 59 (272)
Q Consensus 43 tRVs~LE~E~~~LR~~L 59 (272)
.++.++..|+...+..+
T Consensus 9 d~l~~vq~~l~evk~iM 25 (65)
T 1gl2_A 9 DRVRNLQSEVEGVKNIM 25 (65)
T ss_dssp -CHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 45556666666655554
No 427
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=28.05 E-value=1.2e+02 Score=24.61 Aligned_cols=20 Identities=20% Similarity=0.396 Sum_probs=16.7
Q ss_pred HHHhhhhhHHHHHHHHHHHH
Q 024140 41 ISTRVSDLESEHSALRSQLA 60 (272)
Q Consensus 41 ~atRVs~LE~E~~~LR~~L~ 60 (272)
++.++.+|+-|-..||++|.
T Consensus 13 LaaeL~kLqmENK~LKkkl~ 32 (110)
T 2oa5_A 13 MVKEVERLKLENKTLKQKVK 32 (110)
T ss_dssp HHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 46788999999999999986
No 428
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=28.04 E-value=4e+02 Score=25.89 Aligned_cols=34 Identities=18% Similarity=0.129 Sum_probs=22.1
Q ss_pred HHHHH----HHH-HHHHhhhHHHHHHHHHHHHhhccccc
Q 024140 97 ENEAL----TNT-VRKLQRDVSKLEVFRKTLVQSLKDDE 130 (272)
Q Consensus 97 E~~~L----a~T-vKkL~rDvaKLE~FKk~LmqSLq~d~ 130 (272)
+.+.| ... ++.|..++..||.--+.|-..|++--
T Consensus 100 ~~~~l~~~~~~~~~~~l~~~i~~le~~~~~~~~~~~~~l 138 (484)
T 3lss_A 100 QVEQLCVLQLKQLSKDLSDQVAGLAKEAQQLEEERDKLM 138 (484)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556 666 88888888888887777777766543
No 429
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=27.95 E-value=35 Score=26.28 Aligned_cols=19 Identities=32% Similarity=0.646 Sum_probs=9.1
Q ss_pred HHHhhhhhHHHHHHHHHHH
Q 024140 41 ISTRVSDLESEHSALRSQL 59 (272)
Q Consensus 41 ~atRVs~LE~E~~~LR~~L 59 (272)
|..|+..||.++..|..+|
T Consensus 2 ~~~~l~~l~~~~~~l~~~l 20 (149)
T 1rtm_1 2 IEVKLANMEAEINTLKSKL 20 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555555444444443
No 430
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=27.87 E-value=57 Score=32.11 Aligned_cols=60 Identities=18% Similarity=0.254 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Q 024140 66 IAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQS 125 (272)
Q Consensus 66 i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqS 125 (272)
-.+|++|+-.++.+.. .-|..+.+....|.++......-.+.|.+....+|.-++.|..+
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~ 399 (575)
T 2i1j_A 337 QQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEET 399 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777776665 55556666666666666666666666666666666665555443
No 431
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=27.86 E-value=1.8e+02 Score=21.37 Aligned_cols=30 Identities=13% Similarity=0.338 Sum_probs=16.6
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 024140 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQ 70 (272)
Q Consensus 41 ~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq 70 (272)
+-.++..|..++..|..++.|=+..+.+|.
T Consensus 13 lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~ 42 (107)
T 1fxk_A 13 LQQQAQAISVQKQTVEMQINETQKALEELS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555556666555555555555553
No 432
>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B
Probab=27.84 E-value=1.6e+02 Score=20.80 Aligned_cols=25 Identities=16% Similarity=0.259 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 52 HSALRSQLAEKDSRIAELQSQIESI 76 (272)
Q Consensus 52 ~~~LR~~L~EKd~~i~~Lq~r~s~l 76 (272)
+..++....+=+..+.+|+..+..|
T Consensus 14 a~~~~~~~~~i~~~l~~l~~~v~~l 38 (94)
T 3fav_B 14 ASAIQGNVTSIHSLLDEGKQSLTKL 38 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444444444
No 433
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=27.79 E-value=98 Score=27.83 Aligned_cols=11 Identities=36% Similarity=0.486 Sum_probs=3.9
Q ss_pred HhhhhhHHHHH
Q 024140 43 TRVSDLESEHS 53 (272)
Q Consensus 43 tRVs~LE~E~~ 53 (272)
+||..+|..|.
T Consensus 6 sRvd~~EErIs 16 (233)
T 2yko_A 6 SRCDQLEERVS 16 (233)
T ss_dssp -CHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 34444443333
No 434
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=27.56 E-value=90 Score=24.12 Aligned_cols=19 Identities=37% Similarity=0.462 Sum_probs=9.4
Q ss_pred HHhhhhhHHHHHHHHHHHH
Q 024140 42 STRVSDLESEHSALRSQLA 60 (272)
Q Consensus 42 atRVs~LE~E~~~LR~~L~ 60 (272)
-.|+..|+.++..|.++++
T Consensus 7 ~~~i~~L~~q~~~L~~ei~ 25 (85)
T 3viq_B 7 ESRVHLLEQQKEQLESSLQ 25 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455555555555554444
No 435
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=27.55 E-value=41 Score=24.87 Aligned_cols=28 Identities=14% Similarity=0.058 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 50 SEHSALRSQLAEKDSRIAELQSQIESIY 77 (272)
Q Consensus 50 ~E~~~LR~~L~EKd~~i~~Lq~r~s~le 77 (272)
.+...|+.+=.+=|+.|..|+.+....+
T Consensus 17 ~~f~~L~~eH~~LD~~I~~le~~~~~~~ 44 (76)
T 1zhc_A 17 PHFDKIFEKHNQLDDDIKTAEQQNASDA 44 (76)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCChH
Confidence 3455555555555555555555544333
No 436
>1hx1_B BAG-1, BAG-family molecular chaperone regulator-1; protein-protein complex, apoptosis, protein folding, molecul chaperone; 1.90A {Homo sapiens} SCOP: a.7.7.1 PDB: 3fzf_B* 3fzh_B* 3fzk_B* 3fzl_B* 3fzm_B* 3ldq_B* 3m3z_B*
Probab=27.51 E-value=92 Score=25.33 Aligned_cols=76 Identities=16% Similarity=0.239 Sum_probs=43.6
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 024140 39 IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVF 118 (272)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~F 118 (272)
..++.++..++.|+..+-.-..+|+-....|. .|+ -|++...+..+|+.++-|+|.- .-|+.....-
T Consensus 21 ~~~~kkl~~~~~el~~iekGFL~kel~~eal~----kld----Krik~~~E~~MK~LE~lDsl~i-----~e~~~~~R~k 87 (114)
T 1hx1_B 21 EKIADQLEELNKELTGIQQGFLPKDLQAEALC----KLD----RRVKATIEQFMKILEEIDTLIL-----PENFKDSRLK 87 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHH----TTH----HHHHHHHHHHHHHHHHHTTCCC-----CTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcccccHhHHHHHH----HHH----HHHHHHHHHHHHHHHHhhcccC-----ChhHHHHHHH
Confidence 56666777777777766666666654333321 111 4556777777777777776642 4444444444
Q ss_pred HHHHHhhcc
Q 024140 119 RKTLVQSLK 127 (272)
Q Consensus 119 Kk~LmqSLq 127 (272)
||.|+..+|
T Consensus 88 RK~lV~~iQ 96 (114)
T 1hx1_B 88 RKGLVKKVQ 96 (114)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555444
No 437
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.34 E-value=2.3e+02 Score=22.38 Aligned_cols=23 Identities=4% Similarity=0.161 Sum_probs=11.8
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHH
Q 024140 37 TSIAISTRVSDLESEHSALRSQL 59 (272)
Q Consensus 37 ts~A~atRVs~LE~E~~~LR~~L 59 (272)
.+-.|+.-|.++=.-+..|+..+
T Consensus 15 l~~~is~~I~~In~~vs~l~r~v 37 (130)
T 2dnx_A 15 IIQTCSGNIQRISQATAQIKNLM 37 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555443
No 438
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=27.31 E-value=84 Score=27.59 Aligned_cols=20 Identities=10% Similarity=0.052 Sum_probs=9.6
Q ss_pred HHHHHhhhHHHHHHHHHHHH
Q 024140 104 TVRKLQRDVSKLEVFRKTLV 123 (272)
Q Consensus 104 TvKkL~rDvaKLE~FKk~Lm 123 (272)
.+|-|.+++-+....+..|.
T Consensus 55 ~arilAkelVR~Rk~~~rl~ 74 (218)
T 3frt_A 55 VCIVLAKEMIRSRKAVSKLY 74 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555544444443
No 439
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=27.16 E-value=2.5e+02 Score=22.70 Aligned_cols=10 Identities=10% Similarity=0.365 Sum_probs=4.0
Q ss_pred HHHhhhhhHH
Q 024140 41 ISTRVSDLES 50 (272)
Q Consensus 41 ~atRVs~LE~ 50 (272)
|...|..|+.
T Consensus 21 i~~~v~~L~~ 30 (196)
T 1fio_A 21 YDHTINQVDS 30 (196)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444433
No 440
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=27.11 E-value=2e+02 Score=21.70 Aligned_cols=52 Identities=10% Similarity=0.362 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhHHH-HH
Q 024140 61 EKDSRIAELQSQIESIYSSLSDKLGQAQADKERL---SKENEALTNTVRKLQRDVSK-LE 116 (272)
Q Consensus 61 EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL---~~E~~~La~TvKkL~rDvaK-LE 116 (272)
+|...|.+++..+..++.-|. +-.-|...+ ...|..+.+.|+.-.+||.+ |+
T Consensus 31 ~Rk~~i~~ie~~ldEA~ell~----qMelE~~~~~~p~~~R~~~~~klr~Yk~dl~~~lk 86 (97)
T 3onj_A 31 QRNTTLKHVEQQQDELFDLLD----QMDVEVNNSIGDASERATYKAKLREWKKTIQSDIK 86 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666555554443 444444444 24577778888888888887 74
No 441
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=26.94 E-value=56 Score=28.09 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024140 52 HSALRSQLAEKDSRIAELQSQI 73 (272)
Q Consensus 52 ~~~LR~~L~EKd~~i~~Lq~r~ 73 (272)
+..|..++..|.+++.+||-++
T Consensus 150 v~~L~~~ie~kn~~l~ele~k~ 171 (172)
T 4e8u_A 150 VQNLRQLVEEKKKDMKEIEELC 171 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 5556666777777777776553
No 442
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=26.90 E-value=1.8e+02 Score=20.95 Aligned_cols=57 Identities=18% Similarity=0.345 Sum_probs=29.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024140 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRD 111 (272)
Q Consensus 44 RVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rD 111 (272)
++.++..|+...+..+.+-= ..+=+|- .+|....+.-..|..+=.....+.++|+|.
T Consensus 9 ~l~~vq~el~ev~~iM~~NI---~~vL~Rg--------ekLd~L~~ks~~L~~~s~~F~~~a~~l~r~ 65 (74)
T 2nps_A 9 KIKHVQNQVDEVIDVMQENI---TKVIERG--------ERLDELQDKSESLSDNATAFSNRSKQLRRQ 65 (74)
T ss_dssp SSHHHHTTHHHHHHHHHHHH---HHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHhh--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666665553221 1111111 344445555555666666666666676664
No 443
>3f31_A Spectrin alpha chain, brain; LONE helix followed by A triple helical bundle, actin cappin binding, alternative splicing, calcium; 2.30A {Homo sapiens} SCOP: a.7.1.0
Probab=26.75 E-value=2.3e+02 Score=22.11 Aligned_cols=61 Identities=8% Similarity=0.072 Sum_probs=39.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 45 VSDLESEHSALRSQLAEKDSRI-----------AELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTV 105 (272)
Q Consensus 45 Vs~LE~E~~~LR~~L~EKd~~i-----------~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~Tv 105 (272)
+..+..++..|..=+.||.... ..+.+++..++.++. .++....+...+|..++---+..|
T Consensus 48 l~~F~~d~~el~~Wi~ek~~~~~~~~~~d~~~v~~~l~kH~afe~El~a~~~~l~~v~~~g~~Li~~~~~~~~~I 122 (149)
T 3f31_A 48 FQFFQRDAEELEKWIQEKLQIASDENYKDPTNLQGKLQKHQAFEAEVQANSGAIVKLDETGNLMISEGHFASETI 122 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCSSCSSSCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHH
Confidence 3444456666666677776653 456677888888888 777777777777777654333333
No 444
>3teq_A Stromal interaction molecule 1; signaling protein; 1.90A {Homo sapiens}
Probab=26.62 E-value=2e+02 Score=22.78 Aligned_cols=28 Identities=21% Similarity=0.284 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024140 82 DKLGQAQADKERLSKENEALTNTVRKLQ 109 (272)
Q Consensus 82 ~rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (272)
.+|..|.+.++||.+-|.++-.+++-.+
T Consensus 28 kql~~A~e~~eKl~KKrsS~~gs~~~ah 55 (101)
T 3teq_A 28 KQLMVAKEGAEKIKKKRNTLFGTFHVAH 55 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhhchheeeehhc
Confidence 4456899999999999999998887654
No 445
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=26.53 E-value=1.8e+02 Score=24.40 Aligned_cols=19 Identities=32% Similarity=0.368 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024140 53 SALRSQLAEKDSRIAELQS 71 (272)
Q Consensus 53 ~~LR~~L~EKd~~i~~Lq~ 71 (272)
..|+++|.+.++.|++|++
T Consensus 8 ee~~e~L~~~e~l~~el~~ 26 (184)
T 4egx_A 8 EEAIERLKETEKIIAELNE 26 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4677888887777777753
No 446
>2l3l_A Tubulin-specific chaperone C; tubulin binding cofactor; NMR {Homo sapiens}
Probab=26.53 E-value=1.6e+02 Score=23.13 Aligned_cols=61 Identities=23% Similarity=0.183 Sum_probs=26.8
Q ss_pred HHHHhhhhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 024140 40 AISTRVSDLESEHSAL--RSQLAEKDSRIAELQSQIESIYSSLS-DKLGQAQADKERLSKENEA 100 (272)
Q Consensus 40 A~atRVs~LE~E~~~L--R~~L~EKd~~i~~Lq~r~s~le~~l~-~rL~~a~ee~~kL~~E~~~ 100 (272)
++..++..+|..+..+ .+.+.+=...|..|++-|+..-.-|- =.++.+.+....|+...+.
T Consensus 39 ~F~~~~~~Ie~~l~~~~~~~~ld~i~~~I~~Lqk~v~das~fLp~YD~R~~q~~i~~L~~~l~e 102 (111)
T 2l3l_A 39 TFARERAAVEELLERAESVERLEEAASRLQGLQKLINDSVFFLAAYDLRQGQEALARLQAALAE 102 (111)
T ss_dssp HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666544 33344444444444433332111000 2344555555555444333
No 447
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=26.50 E-value=1.6e+02 Score=20.38 Aligned_cols=30 Identities=7% Similarity=0.310 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024140 82 DKLGQAQADKERLSKENEALTNTVRKLQRD 111 (272)
Q Consensus 82 ~rL~~a~ee~~kL~~E~~~La~TvKkL~rD 111 (272)
.+|....+.-..|...=.....+.++|+|.
T Consensus 30 ekLd~L~~ks~~L~~~s~~F~~~a~~l~r~ 59 (61)
T 3b5n_A 30 ERLTSIEDKADNLAVSAQGFKRGANRVRKA 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444455555665556666666666653
No 448
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=26.46 E-value=2.5e+02 Score=22.40 Aligned_cols=11 Identities=27% Similarity=0.105 Sum_probs=5.1
Q ss_pred hhhHHHHHHHH
Q 024140 27 FEQLDVARKIT 37 (272)
Q Consensus 27 ~EQLdlarkIt 37 (272)
.+||+..+.|.
T Consensus 57 ~~dl~~l~~I~ 67 (148)
T 3gpv_A 57 EEALKYLEMIL 67 (148)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34555444443
No 449
>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=26.42 E-value=4.3e+02 Score=25.25 Aligned_cols=59 Identities=12% Similarity=0.193 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 024140 53 SALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (272)
Q Consensus 53 ~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (272)
...++-+.++...+.+|...+.....++.+-|.++..+.. -.+.....+++.+.+|++|
T Consensus 311 ~~fk~~~~~~~~~~~~L~~~Y~~f~~aY~~lL~Ev~RRr~----~~~~~~~i~~~~~~~L~~l 369 (413)
T 4hpq_C 311 QKFKASCLEDIRQTRNLLDFYANFERSYHNLLKEVKRRKE----TAAKLSQILKSCETQLEQI 369 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 3344556667777788888888888888744444444443 4445555666666666655
No 450
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=26.37 E-value=2.1e+02 Score=21.61 Aligned_cols=21 Identities=10% Similarity=0.135 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024140 56 RSQLAEKDSRIAELQSQIESI 76 (272)
Q Consensus 56 R~~L~EKd~~i~~Lq~r~s~l 76 (272)
-..+.|-++.|..|+--+..+
T Consensus 40 e~~ldEA~ell~qMelE~~~~ 60 (97)
T 3onj_A 40 EQQQDELFDLLDQMDVEVNNS 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 333444444444444333333
No 451
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Probab=26.34 E-value=60 Score=27.70 Aligned_cols=7 Identities=14% Similarity=0.667 Sum_probs=3.3
Q ss_pred HHHHHHH
Q 024140 114 KLEVFRK 120 (272)
Q Consensus 114 KLE~FKk 120 (272)
|+++|-+
T Consensus 81 kI~nfS~ 87 (228)
T 1flk_A 81 KIRDYKR 87 (228)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 4455543
No 452
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=26.30 E-value=1.6e+02 Score=20.16 Aligned_cols=14 Identities=14% Similarity=0.363 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHH
Q 024140 65 RIAELQSQIESIYS 78 (272)
Q Consensus 65 ~i~~Lq~r~s~le~ 78 (272)
.|.+||+|...||.
T Consensus 24 kI~~lqkKlkeLee 37 (42)
T 2l5g_B 24 QISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34445555444443
No 453
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=26.22 E-value=1.7e+02 Score=20.54 Aligned_cols=8 Identities=25% Similarity=0.231 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 024140 67 AELQSQIE 74 (272)
Q Consensus 67 ~~Lq~r~s 74 (272)
..|+..+.
T Consensus 33 ~~L~~~v~ 40 (99)
T 3zbh_A 33 ARLDQMSH 40 (99)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 454
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=26.19 E-value=3e+02 Score=23.31 Aligned_cols=45 Identities=13% Similarity=0.194 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHhhc
Q 024140 82 DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV-FRKTLVQSL 126 (272)
Q Consensus 82 ~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~-FKk~LmqSL 126 (272)
.|++....+..-|.+=.+.....+.++.+|-.+-+. ++.-+.+.|
T Consensus 84 aR~~vL~ar~e~i~~v~~~a~~~L~~~~~d~~~Y~~lL~~Li~eal 129 (233)
T 4efa_E 84 MRLKVLSAREQSLDGIFEETKEKLSGIANNRDEYKPILQSLIVEAL 129 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence 333333333333333333334444444444443322 333344443
No 455
>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=26.02 E-value=4.4e+02 Score=25.20 Aligned_cols=17 Identities=29% Similarity=0.411 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024140 56 RSQLAEKDSRIAELQSQ 72 (272)
Q Consensus 56 R~~L~EKd~~i~~Lq~r 72 (272)
...|.++...+..|+..
T Consensus 269 ~~~l~~~~~~~~~l~~~ 285 (413)
T 4hpq_C 269 NMLLDERDADKAKMQAT 285 (413)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 456
>3rki_A Fusion glycoprotein F0; fusion protein, viral protein; HET: NAG; 3.20A {Human respiratory syncytial virus}
Probab=25.73 E-value=3.5e+02 Score=27.07 Aligned_cols=70 Identities=20% Similarity=0.258 Sum_probs=48.5
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 024140 36 ITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (272)
Q Consensus 36 Its~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (272)
||+-+---+..+.+++|.+||+.++.=.+.+.+|.+-++.|-.+++ +.|+. =|+.|.-++..|.++++-+
T Consensus 139 ITAavAL~qA~qNA~nIlrLKeSI~~TNeAV~elt~gls~lavAV~-----~lQd~-----IN~~i~PaIn~lsC~v~~~ 208 (528)
T 3rki_A 139 IASGVAVSKVLHLEGEVNKIKSALLSTNKAVVSLSNGVSVLTSKVL-----DLKNY-----IDKQLLPIVNKQSCSISNI 208 (528)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH-----HHHTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH-----HhhhhhhhhhhcChHHHHh
Confidence 4433334567889999999999999999999999999998888876 22221 1334555555555555443
No 457
>1tu3_F RAB GTPase binding effector protein 1; rabaptin5, effector-binding, protein transport; HET: GNP; 2.31A {Homo sapiens} SCOP: h.1.27.2
Probab=25.64 E-value=37 Score=26.04 Aligned_cols=31 Identities=16% Similarity=0.184 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 024140 90 DKERLSKENEALTNTVRKLQRDVSKLEVFRK 120 (272)
Q Consensus 90 e~~kL~~E~~~La~TvKkL~rDvaKLE~FKk 120 (272)
++++|.+.+..|.+.|..|+.+|+--|+.-|
T Consensus 6 ~k~~Le~~~~e~k~kv~~LQ~eLdtsE~VQr 36 (79)
T 1tu3_F 6 AKATVEQLMFEEKNKAQRLQTELDVSEQVQR 36 (79)
T ss_dssp ---------------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555444
No 458
>4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, cell cycle; HET: GTP GDP; 4.17A {Artificial gene}
Probab=25.53 E-value=2.3e+02 Score=25.69 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 49 ESEHSALRSQLAEKDSRIAELQSQIE 74 (272)
Q Consensus 49 E~E~~~LR~~L~EKd~~i~~Lq~r~s 74 (272)
|+-+..|+.+|.||+.+..+.+..+.
T Consensus 110 eA~laal~erLkek~~~aeeVRr~~~ 135 (240)
T 4f61_I 110 EAHFAAMLERLQEKDKHAEEVRQRAI 135 (240)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45588899999999999888877653
No 459
>2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter baumannii} PDB: 2xkk_A*
Probab=25.26 E-value=3.3e+02 Score=28.37 Aligned_cols=43 Identities=14% Similarity=0.376 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccccc
Q 024140 89 ADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDDED 131 (272)
Q Consensus 89 ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq~d~~ 131 (272)
-|..||.+|.+.|...++.|..-|+..+.+++.+..-|.+.-+
T Consensus 696 le~~kl~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~~~~ 738 (767)
T 2xkj_E 696 LEEMEIRHEQDELSAKAAIIREQLENPESLKNLIISELKEDAK 738 (767)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999999988888888888777776544
No 460
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=25.11 E-value=2.4e+02 Score=24.69 Aligned_cols=30 Identities=20% Similarity=0.491 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 52 HSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 52 ~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~ 81 (272)
+..|..+|.+....+.+|++++-.+.+.+.
T Consensus 61 ~~~l~~~l~~l~~e~~el~d~~lR~~AEfe 90 (213)
T 4ani_A 61 LAAAKAQIAELEAKLSEMEHRYLRLYADFE 90 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555444
No 461
>3o6x_A Glutamine synthetase; type III, beta barrel,dodecamer, ligas; HET: P3S ADP; 3.50A {Bacteroides fragilis}
Probab=24.72 E-value=4.3e+02 Score=27.35 Aligned_cols=20 Identities=15% Similarity=0.321 Sum_probs=13.7
Q ss_pred HHHHHHHHHHhhhHHHHHHH
Q 024140 99 EALTNTVRKLQRDVSKLEVF 118 (272)
Q Consensus 99 ~~La~TvKkL~rDvaKLE~F 118 (272)
+...-.+.+|...+.+||.+
T Consensus 692 ~~v~~~m~~~R~~~D~lE~~ 711 (729)
T 3o6x_A 692 ETVRPYLESIRDHIDHLEME 711 (729)
T ss_dssp HHTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44555666777778888865
No 462
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=24.63 E-value=2.1e+02 Score=24.02 Aligned_cols=60 Identities=12% Similarity=0.184 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 024140 52 HSALRSQLAEK--------DSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (272)
Q Consensus 52 ~~~LR~~L~EK--------d~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (272)
+.+..+.+.+| |....++++++..++..+. ....+...+.+....+......|...+..|
T Consensus 32 ~~Ra~q~~~~k~G~~e~T~D~~Fe~~~~~f~~~e~~~~----~l~k~~k~y~~~~~~~~~~~~~l~~~~~~l 99 (251)
T 2fic_A 32 LTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLTEGT----RLQKDLRTYLASVKAMHEASKKLNECLQEV 99 (251)
T ss_dssp --------------------CHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 463
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=24.62 E-value=1.1e+02 Score=24.01 Aligned_cols=48 Identities=10% Similarity=0.232 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhhhhhH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 34 RKITSIAISTRVSDLE--------SEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (272)
Q Consensus 34 rkIts~A~atRVs~LE--------~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~ 81 (272)
--+...-||.|+..+. .....|+.++.+-.+.+..|++++..||.+|.
T Consensus 58 eTl~TL~fa~rak~i~n~~~~n~~~~~~~l~~~~~~e~~~~~~L~~~i~~Le~el~ 113 (117)
T 3kin_B 58 ETKSTLMFGQRAKTIKNTVSVNLELTAEEWKKKYEKEKEKNKALKSVIQHLEVELN 113 (117)
T ss_dssp HHHHHHHHHHHHTTCEEEECCCBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccCCceecCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666665443 23566777777777777888888888887764
No 464
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.61 E-value=68 Score=30.59 Aligned_cols=41 Identities=20% Similarity=0.385 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 024140 68 ELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (272)
Q Consensus 68 ~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDv 112 (272)
+|+.|...||.++. ....+..+|..|+..|...++.+...+
T Consensus 29 ~l~~r~~~le~e~~----~l~~e~~r~~~e~~~~~~~~~~~~~~i 69 (434)
T 4b4t_M 29 ELQTRAKLLDNEIR----IFRSELQRLSHENNVMLEKIKDNKEKI 69 (434)
T ss_dssp ------------CH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444332 334455555566655555555544333
No 465
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=24.55 E-value=3.2e+02 Score=23.10 Aligned_cols=8 Identities=38% Similarity=0.680 Sum_probs=3.5
Q ss_pred hhhHHHHH
Q 024140 109 QRDVSKLE 116 (272)
Q Consensus 109 ~rDvaKLE 116 (272)
+|.+.|-+
T Consensus 73 QRn~~K~~ 80 (167)
T 4gkw_A 73 QRNLEKAD 80 (167)
T ss_dssp HHHHHHHH
T ss_pred HHhHHHHH
Confidence 44444443
No 466
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=24.50 E-value=1.4e+02 Score=19.56 Aligned_cols=19 Identities=32% Similarity=0.496 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024140 89 ADKERLSKENEALTNTVRK 107 (272)
Q Consensus 89 ee~~kL~~E~~~La~TvKk 107 (272)
+|++.|.+.|..|..+|+.
T Consensus 14 qDIddlkrQN~~Le~Qir~ 32 (34)
T 1a93_B 14 QDIDDLKRQNALLEQQVRA 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHh
Confidence 3444444444444444443
No 467
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=24.37 E-value=1.6e+02 Score=25.52 Aligned_cols=25 Identities=36% Similarity=0.460 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 83 KLGQAQADKERLSKENEALTNTVRK 107 (272)
Q Consensus 83 rL~~a~ee~~kL~~E~~~La~TvKk 107 (272)
+.....++|.+|++||+.|..--.+
T Consensus 153 ~~~~L~~~n~~LqkeNeRL~~E~n~ 177 (184)
T 3w03_C 153 TIAENQAKNEHLQKENERLLRDWND 177 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555666666655544433
No 468
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=24.34 E-value=2.5e+02 Score=26.49 Aligned_cols=49 Identities=14% Similarity=0.148 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024140 58 QLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQR 110 (272)
Q Consensus 58 ~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~r 110 (272)
.+..-...++.+|++++..|..+- ..-+...+=+-.|..|++++-.|..
T Consensus 11 e~~~~~~~~~~vq~kA~~~E~~Yn----~~~dKmeqE~lrRRkLENSIdElKG 59 (333)
T 4etp_B 11 EIAALEKEIAALEKEISKQEKFYN----DTYNTVCKELLRSRRLENSIIEQKG 59 (333)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhHHHhcC
Confidence 333334455666667776676665 2222222223345667777666543
No 469
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=24.25 E-value=3e+02 Score=22.62 Aligned_cols=90 Identities=19% Similarity=0.239 Sum_probs=54.1
Q ss_pred hhHHHHHHHHH------HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 024140 28 EQLDVARKITS------IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKEN 98 (272)
Q Consensus 28 EQLdlarkIts------~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~ 98 (272)
..|+-|.|.+. ..|-.|-..-|..+..|-.+|.+-.....+-..+|....+-|. +.|..+.++........
T Consensus 24 ~kLeeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~ 103 (147)
T 2b9c_A 24 QKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKC 103 (147)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555542 2344455555555667777777766666777777766666555 66666666666666666
Q ss_pred HHHHHHHHHHhhhHHHHHH
Q 024140 99 EALTNTVRKLQRDVSKLEV 117 (272)
Q Consensus 99 ~~La~TvKkL~rDvaKLE~ 117 (272)
..|...++-+...+--||.
T Consensus 104 ~eLEeeL~~~~~nlKsLE~ 122 (147)
T 2b9c_A 104 AELEEELKTVTNNLKSLED 122 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHH
Confidence 6666666666665555543
No 470
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=24.18 E-value=2.1e+02 Score=20.76 Aligned_cols=10 Identities=20% Similarity=0.215 Sum_probs=4.5
Q ss_pred HHHHHHHHHH
Q 024140 49 ESEHSALRSQ 58 (272)
Q Consensus 49 E~E~~~LR~~ 58 (272)
|..+.+||+.
T Consensus 10 e~q~~kLKq~ 19 (58)
T 3a2a_A 10 ERQLLRLKQM 19 (58)
T ss_dssp -CHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4445555543
No 471
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=24.06 E-value=3.8e+02 Score=23.82 Aligned_cols=15 Identities=13% Similarity=0.313 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 024140 67 AELQSQIESIYSSLS 81 (272)
Q Consensus 67 ~~Lq~r~s~le~~l~ 81 (272)
.+|+.++.-+-.+|+
T Consensus 113 eelk~~L~Py~eelr 127 (273)
T 3s84_A 113 EELKGRLTPYADEFK 127 (273)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHhHhHHHHHH
Confidence 344444444433333
No 472
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=23.69 E-value=2.5e+02 Score=21.55 Aligned_cols=38 Identities=11% Similarity=0.225 Sum_probs=17.3
Q ss_pred HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024140 74 ESIYSSLS------DKLGQAQADKERLSKENEALTNTVRKLQRD 111 (272)
Q Consensus 74 s~le~~l~------~rL~~a~ee~~kL~~E~~~La~TvKkL~rD 111 (272)
+.||.+++ ..|.....+|..++++-..-...-+.|..+
T Consensus 17 SALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e 60 (81)
T 1wt6_A 17 EALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAH 60 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555544 444455555555554444333333334333
No 473
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=23.63 E-value=2.2e+02 Score=28.26 Aligned_cols=7 Identities=14% Similarity=0.131 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 024140 116 EVFRKTL 122 (272)
Q Consensus 116 E~FKk~L 122 (272)
+.|++++
T Consensus 457 ~~w~~~~ 463 (695)
T 2j69_A 457 AAWTLTA 463 (695)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333433
No 474
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=23.59 E-value=1.9e+02 Score=20.19 Aligned_cols=24 Identities=8% Similarity=0.051 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 54 ALRSQLAEKDSRIAELQSQIESIY 77 (272)
Q Consensus 54 ~LR~~L~EKd~~i~~Lq~r~s~le 77 (272)
.++....+=+..+.+|+..+..|.
T Consensus 17 ~~~~~~~~l~~~l~~L~~~~~~L~ 40 (97)
T 2vs0_A 17 SYGQGSDQIRQILSDLTRAQGEIA 40 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333334444444444443
No 475
>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae}
Probab=23.41 E-value=4e+02 Score=23.82 Aligned_cols=36 Identities=14% Similarity=0.020 Sum_probs=15.9
Q ss_pred Cchh--hHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 024140 25 DPFE--QLDVARKITSIAISTRVSDLESEHSALRSQLA 60 (272)
Q Consensus 25 DP~E--QLdlarkIts~A~atRVs~LE~E~~~LR~~L~ 60 (272)
=||| =|+.+-.-+...+-+++..||.++..+=+.|.
T Consensus 121 lPFEfraLEa~L~~v~~~Le~e~~~l~~~~~~~L~~L~ 158 (261)
T 3rkg_A 121 QFYEHRALESIFINVMSALETDFKLHSQICIQILNDLE 158 (261)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3565 24444444444444444444444443333343
No 476
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=23.33 E-value=5.6e+02 Score=25.44 Aligned_cols=17 Identities=6% Similarity=0.288 Sum_probs=7.7
Q ss_pred HHHhhhhhHHHHHHHHH
Q 024140 41 ISTRVSDLESEHSALRS 57 (272)
Q Consensus 41 ~atRVs~LE~E~~~LR~ 57 (272)
|-.++..-+.|+.+.+.
T Consensus 7 yq~~la~yq~elarvqk 23 (497)
T 3iox_A 7 YQAKLTAYQTELARVQK 23 (497)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444455444443
No 477
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=23.28 E-value=1.6e+02 Score=21.58 Aligned_cols=16 Identities=19% Similarity=0.277 Sum_probs=8.4
Q ss_pred HHHHhhhhhHHHHHHH
Q 024140 40 AISTRVSDLESEHSAL 55 (272)
Q Consensus 40 A~atRVs~LE~E~~~L 55 (272)
|++.++..|..|...+
T Consensus 6 aiKkkmqaLk~Ekdna 21 (75)
T 3mtu_A 6 AIKKKMQMLKLDKENA 21 (75)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5666665555544433
No 478
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=23.26 E-value=4.7e+02 Score=24.56 Aligned_cols=11 Identities=36% Similarity=0.836 Sum_probs=5.4
Q ss_pred HHHHHHHHHHh
Q 024140 114 KLEVFRKTLVQ 124 (272)
Q Consensus 114 KLE~FKk~Lmq 124 (272)
+|..||-.|..
T Consensus 240 Ri~~lK~~L~~ 250 (486)
T 3haj_A 240 RLRFFREVLLE 250 (486)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45555555544
No 479
>2yfa_A MCPS, methyl-accepting chemotaxis transducer; receptor, chemoreceptor; 1.80A {Pseudomonas putida} PDB: 2yfb_A
Probab=23.26 E-value=3.1e+02 Score=22.45 Aligned_cols=70 Identities=13% Similarity=0.209 Sum_probs=33.1
Q ss_pred HhhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 024140 43 TRVSDLESEHSALRSQLA-EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (272)
Q Consensus 43 tRVs~LE~E~~~LR~~L~-EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (272)
..+..++..+..|+..|. +. ..+.++..-+......+ ..+..+.++..++. ..|.....++...+..|..
T Consensus 178 ~~~~~~~~~l~~L~~~l~~~~-~~l~~~~~~l~~Y~~~~-~~~~~a~~~~~~~~---~~m~~~g~~l~~~~~~l~~ 248 (258)
T 2yfa_A 178 RQLDAALADTDNLKRQLPSED-ARLQQFENAVLAYRDAV-RQFRDAVANITTSR---AEMTVQGADIVKRSDALYQ 248 (258)
T ss_dssp HHHHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCchH-HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 344445555555555553 22 44444444444444333 23334444444433 3456666666666655533
No 480
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=23.20 E-value=1.9e+02 Score=23.38 Aligned_cols=81 Identities=15% Similarity=0.115 Sum_probs=0.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 024140 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (272)
Q Consensus 41 ~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (272)
+......|+.++..+++++.+..+...++ +..+-.+|. ..+....+...+-..........+..+.+.+.+|..
T Consensus 15 ~~~~~~~l~~~l~~~~~~l~~~~~~~~~~---~~~l~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~ 91 (268)
T 4ew8_A 15 VPRGSHMLQSALADRSAALAEAERLKRDF---VGNVSYELRTPLTTIIGYSELLERADGISERGRNHVAAVRAAATQLAR 91 (268)
T ss_dssp ----------CCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHh
Q 024140 118 FRKTLVQ 124 (272)
Q Consensus 118 FKk~Lmq 124 (272)
+=+.|+.
T Consensus 92 ~i~~l~~ 98 (268)
T 4ew8_A 92 SIDDVLD 98 (268)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
No 481
>3g0m_A Cysteine desulfuration protein SUFE; YNHA, csgid, national I of allergy and infectious diseases, niaid, hydrolase, struc genomics; 1.76A {Salmonella typhimurium LT2} SCOP: d.224.1.1 PDB: 1mzg_A
Probab=23.18 E-value=21 Score=29.41 Aligned_cols=44 Identities=20% Similarity=0.305 Sum_probs=35.2
Q ss_pred CCChhHHHhcCCCCchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 024140 12 FDLPEEVLQVLPSDPFEQLDVARKITSIAISTRVSDLESEHSALRSQL 59 (272)
Q Consensus 12 F~lp~eil~vLP~DP~EQLdlarkIts~A~atRVs~LE~E~~~LR~~L 59 (272)
-.=|+||+++=|.|=|++|.|...++ .+|...|.+=+.++|.+.
T Consensus 94 G~tp~eIl~~d~~~f~~~lGL~~~LS----psR~nGl~am~~~ik~~a 137 (141)
T 3g0m_A 94 QMTAQDIVHFDVRPWFEKMALAQHLT----PSRSQGLEAMIRAIRAKA 137 (141)
T ss_dssp TCBHHHHHHCCCHHHHHHHTCGGGSC----HHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHhCCHHHHHHHcCchhhcC----chHHHHHHHHHHHHHHHH
Confidence 34689999987778899999987765 578888888888887754
No 482
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=23.11 E-value=11 Score=35.05 Aligned_cols=43 Identities=14% Similarity=0.172 Sum_probs=18.6
Q ss_pred cCCCCch---hhHHHHHHHHHHHHHHhhh--------hhHHHHHHHHHHHHHHH
Q 024140 21 VLPSDPF---EQLDVARKITSIAISTRVS--------DLESEHSALRSQLAEKD 63 (272)
Q Consensus 21 vLP~DP~---EQLdlarkIts~A~atRVs--------~LE~E~~~LR~~L~EKd 63 (272)
.+|.|.. ..+.|.-++.+..+..|.. .|.-.+.+|=+++.+++
T Consensus 280 li~~d~~~~~~~~~Lid~~v~qivl~~~~~Dpd~~~~~l~~~v~~l~d~l~~~~ 333 (386)
T 2bnx_A 280 LVRNDYEARPQYYKLIEECVSQIVLHKNGTDPDFKCRHLQIDIERLVDQMIDKT 333 (386)
T ss_dssp TSCCCTTTHHHHHHHHHHHHHHHHTCGGGCCCCTTCSCCCCCCTTTC-----CT
T ss_pred hCCCcchhHHHHHHHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHhhhh
Confidence 3565643 2445556666555544332 34444555555555543
No 483
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=23.08 E-value=3.7e+02 Score=25.26 Aligned_cols=36 Identities=22% Similarity=0.150 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccccc
Q 024140 96 KENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDDED 131 (272)
Q Consensus 96 ~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq~d~~ 131 (272)
++...|...++.|..++..||.--+.+-..|++--.
T Consensus 64 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (421)
T 1ses_A 64 EEKEALIARGKALGEEAKRLEEALREKEARLEALLL 99 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445678888888888888888877777666655433
No 484
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=22.98 E-value=5.1e+02 Score=25.24 Aligned_cols=13 Identities=0% Similarity=0.115 Sum_probs=5.4
Q ss_pred HHHHHHHHHHhhc
Q 024140 114 KLEVFRKTLVQSL 126 (272)
Q Consensus 114 KLE~FKk~LmqSL 126 (272)
++..|.+.+.+.|
T Consensus 121 ~~~~lt~~vq~~i 133 (526)
T 2de0_X 121 EAKDLTELVQRRI 133 (526)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444433
No 485
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=22.92 E-value=2.9e+02 Score=21.96 Aligned_cols=30 Identities=27% Similarity=0.439 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Q 024140 52 HSALRSQLAEKD-------SRIAELQSQIESIYSSLS 81 (272)
Q Consensus 52 ~~~LR~~L~EKd-------~~i~~Lq~r~s~le~~l~ 81 (272)
+..||..|.++- ..+.+|+..|..|...|+
T Consensus 48 V~tL~~SL~kekaq~q~qq~~v~elqgEI~~Lnq~Lq 84 (99)
T 3ni0_A 48 VVTLQESLEKKVSQALEQQARIKELENEVTKLNQELE 84 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555332 234444444444444444
No 486
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=22.92 E-value=1.5e+02 Score=20.88 Aligned_cols=28 Identities=18% Similarity=0.351 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 70 QSQIESIYSSLSDKLGQAQADKERLSKENEAL 101 (272)
Q Consensus 70 q~r~s~le~~l~~rL~~a~ee~~kL~~E~~~L 101 (272)
++++..||..|. .+...+.+|.+||-=|
T Consensus 13 Rkk~eeler~lr----k~kk~iKklEdeNPWL 40 (50)
T 1a92_A 13 RKKLEELERDLR----KLKKKIKKLEEDNPWL 40 (50)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHCTTH
T ss_pred HHHHHHHHHHHH----HHHHHHHhhhccCCch
Confidence 445555665554 5555555665555433
No 487
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=22.86 E-value=2.6e+02 Score=21.34 Aligned_cols=48 Identities=19% Similarity=0.275 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 33 ARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (272)
Q Consensus 33 arkIts~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l 80 (272)
|-.|.-+++..||-.|=.|-..|+..+.--......++.|+..+|.+|
T Consensus 27 aLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeEl 74 (77)
T 2w83_C 27 ALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEEL 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555555555555443
No 488
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=22.84 E-value=2.1e+02 Score=26.13 Aligned_cols=9 Identities=33% Similarity=0.434 Sum_probs=5.0
Q ss_pred HHHHHHHHH
Q 024140 115 LEVFRKTLV 123 (272)
Q Consensus 115 LE~FKk~Lm 123 (272)
+|.||+.|+
T Consensus 182 veelr~~L~ 190 (307)
T 2l7b_A 182 LSAIRERLG 190 (307)
T ss_dssp HHHHHHHCS
T ss_pred HHHHHHHhh
Confidence 555555553
No 489
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=22.64 E-value=3.9e+02 Score=24.49 Aligned_cols=67 Identities=16% Similarity=0.142 Sum_probs=40.4
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 024140 43 TRVSDLESEHSALRSQLAEKDSRIAELQ---SQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (272)
Q Consensus 43 tRVs~LE~E~~~LR~~L~EKd~~i~~Lq---~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDva 113 (272)
.+..+|+.|+..|++++..+...+..|. ..+..+. .++..|..-.++|...=..|.+.++.|.-+|.
T Consensus 226 k~~~~~~~ei~~l~~~i~~~~~l~~~l~~~~~~~~~l~----~~I~~Ai~al~~l~~~W~~m~~~~~~l~~~I~ 295 (346)
T 2nrj_A 226 DNLGKLEPLLAELRQTVDYKVTLNRVVGVAYSNINEMH----KALDDAINALTYMSTQWHDLDSQYSGVLGHIE 295 (346)
T ss_dssp GGHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778899999999999987666655543 2333333 34445555556665555555555444433333
No 490
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A*
Probab=22.63 E-value=6.4e+02 Score=25.90 Aligned_cols=42 Identities=17% Similarity=0.289 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 024140 88 QADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (272)
Q Consensus 88 ~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq~d 129 (272)
..+..||.+|.+.|...++.|..-|+.-+.+++-+..-|.+-
T Consensus 636 ~le~~kl~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~i 677 (692)
T 2xcs_B 636 GLERDKIEAEYNELLNYISELETILADEEVLLQLVRDELTEI 677 (692)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 456789999999999999999999988777777776666544
No 491
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=22.46 E-value=3.5e+02 Score=23.68 Aligned_cols=17 Identities=12% Similarity=0.092 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024140 64 SRIAELQSQIESIYSSL 80 (272)
Q Consensus 64 ~~i~~Lq~r~s~le~~l 80 (272)
+.+..+..|+-.++.+|
T Consensus 96 ~~Ne~l~~~~~~l~l~L 112 (252)
T 3e98_A 96 RENDRLFDKTRRLVLDL 112 (252)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444444
No 492
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=22.37 E-value=1.3e+02 Score=19.71 Aligned_cols=8 Identities=0% Similarity=0.376 Sum_probs=3.1
Q ss_pred hhhhhHHH
Q 024140 44 RVSDLESE 51 (272)
Q Consensus 44 RVs~LE~E 51 (272)
|+.+||..
T Consensus 2 RMnQledK 9 (34)
T 2r2v_A 2 KLKQVADK 9 (34)
T ss_dssp CHHHHHHH
T ss_pred chhHHHHH
Confidence 33444433
No 493
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=22.37 E-value=2.9e+02 Score=21.81 Aligned_cols=55 Identities=15% Similarity=0.193 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 024140 61 EKDSRIAELQSQIESI------YSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (272)
Q Consensus 61 EKd~~i~~Lq~r~s~l------e~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (272)
|+++.-.-|.+|.--| +.+|+++.++.-+.+.+|..|+=.|...|++-..|+.-|
T Consensus 22 ereeKkkiLaER~kpL~id~l~~~~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL 82 (106)
T 1j1d_B 22 EREKKKKILAERRKVLAIDHLNEDQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVL 82 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHH
No 494
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=22.36 E-value=6e+02 Score=25.43 Aligned_cols=86 Identities=16% Similarity=0.265 Sum_probs=0.0
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 024140 39 IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVF 118 (272)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~F 118 (272)
.++..|+..||.|...=+-.+.--+..+..+-+.+..+-.-....-+.-.++.++..-=..+|....|-+..+-.+|..+
T Consensus 93 ~~~~~Kl~eLE~e~k~d~~~~khn~~I~~k~g~~l~~v~~~~~~~~~~e~~e~~q~~~LekAl~s~~~i~~~e~~~l~~L 172 (526)
T 3iyk_A 93 RGIQAKLKELEDEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQFDILNKAVTSYNKILTEEDLQMRRL 172 (526)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q ss_pred HHHHHh
Q 024140 119 RKTLVQ 124 (272)
Q Consensus 119 Kk~Lmq 124 (272)
.+.|..
T Consensus 173 ~~AL~k 178 (526)
T 3iyk_A 173 ATALQK 178 (526)
T ss_pred HHHHHH
No 495
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=22.33 E-value=4.2e+02 Score=26.26 Aligned_cols=60 Identities=18% Similarity=0.185 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024140 34 RKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERL 94 (272)
Q Consensus 34 rkIts~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL 94 (272)
++=+.+.|-.=...||..+.-|+.++.+.-..|.-||.-|..+-..++ ||..+.+-+...
T Consensus 102 ~~dndn~~~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQ-RLE~dI~~q~~~ 161 (491)
T 1m1j_A 102 AQQLDENYGHVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMK-RLEVDIDIKIRA 161 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHT
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
No 496
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=22.26 E-value=2.4e+02 Score=20.75 Aligned_cols=84 Identities=12% Similarity=0.052 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024140 34 RKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQ---IESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQR 110 (272)
Q Consensus 34 rkIts~A~atRVs~LE~E~~~LR~~L~EKd~~i~~Lq~r---~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~r 110 (272)
++++--++...+..|......|...|.+=+..+..|+.- --..-.+++....+-.+...+|..-...+...|..-..
T Consensus 9 i~v~~~~l~~~a~~~~~~~~~i~~~l~~L~~~v~~L~~~g~W~G~A~~ay~~~~~~W~~~a~~l~~~L~~i~~~l~~a~~ 88 (103)
T 4i0x_B 9 FSFDLDHIEQVTSRARGFKEFVTENLDQLESRAQKLVQSGQWAGAAAAAYSQAHKEWMDAARELVEGLSQMEEAARTAHG 88 (103)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHH
Q 024140 111 DVSKLEV 117 (272)
Q Consensus 111 DvaKLE~ 117 (272)
....-|.
T Consensus 89 ~y~~~e~ 95 (103)
T 4i0x_B 89 AYSEAQE 95 (103)
T ss_dssp CC-----
T ss_pred HHHHHHH
No 497
>2vkl_A RV0948C/MT0975; helical, intracellular, chorismate mutase, isomerase; 1.65A {Mycobacterium tuberculosis} PDB: 2qbv_A 2w19_C 2w1a_C*
Probab=22.12 E-value=2e+02 Score=21.50 Aligned_cols=35 Identities=17% Similarity=0.326 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024140 66 IAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRD 111 (272)
Q Consensus 66 i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rD 111 (272)
+.+|++++..+|.+|. +|..||-.++..|-++...
T Consensus 14 L~~lR~~ID~iD~~Ll-----------~LL~~R~~~~~~Ig~~K~~ 48 (90)
T 2vkl_A 14 IDTLREEIDRLDAEIL-----------ALVKRRAEVSKAIGKARMA 48 (90)
T ss_dssp HHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHH
No 498
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=22.02 E-value=1.6e+02 Score=21.38 Aligned_cols=57 Identities=25% Similarity=0.393 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH--HHHHHhhhHHHHHHHHHHH
Q 024140 66 IAELQSQIESIYSSLS-----DKLGQAQADKERLSKENEALTN--TVRKLQRDVSKLEVFRKTL 122 (272)
Q Consensus 66 i~~Lq~r~s~le~~l~-----~rL~~a~ee~~kL~~E~~~La~--TvKkL~rDvaKLE~FKk~L 122 (272)
+..|++++..||.-+. +|+.+....-+.|.+....|-. .|||...+|.|||.--|.|
T Consensus 4 vkaleekvkaleekvkalggggrieelkkkweelkkkieelggggevkkveeevkkleeeikkl 67 (67)
T 1lq7_A 4 VKALEEKVKALEEKVKALGGGGRIEELKKKWEELKKKIEELGGGGEVKKVEEEVKKLEEEIKKL 67 (67)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHHTTSSSTHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhcC
No 499
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=21.99 E-value=3.9e+02 Score=23.16 Aligned_cols=78 Identities=14% Similarity=0.254 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Q 024140 38 SIAISTRVSDLESEHSALRSQLAEK------------DSRIAELQSQIESIYSSLSDKLGQAQADKERLSK--------- 96 (272)
Q Consensus 38 s~A~atRVs~LE~E~~~LR~~L~EK------------d~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~--------- 96 (272)
.-.|..-+..+...+..|....... ...|.+|...+..+=..+..+|+.....+.++..
T Consensus 50 ~~~I~~~I~~i~~~l~~L~~l~~~~l~t~~~~~~~~~~~~ie~l~~~i~~~~~~i~~~lk~l~~~~~~~~~~~~~~~~~~ 129 (279)
T 2xhe_B 50 VKRIRDNIEDIEQAIEQVAQLHTESLVAVSKEDRDRLNEKLQDTMARISALGNKIRADLKQIEKENKRAQQEGTFEDGTV 129 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHCCSTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCc
Q ss_pred --HHHHHHHHHHHHhhhHHHH
Q 024140 97 --ENEALTNTVRKLQRDVSKL 115 (272)
Q Consensus 97 --E~~~La~TvKkL~rDvaKL 115 (272)
|.....+.+.+|.+++..+
T Consensus 130 ~~e~r~~k~~~~~L~~~f~~~ 150 (279)
T 2xhe_B 130 STDLRIRQSQHSSLSRKFVKV 150 (279)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
No 500
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.96 E-value=1.8e+02 Score=27.64 Aligned_cols=67 Identities=16% Similarity=0.244 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 024140 56 RSQLAEKDSRIAELQSQIESIYSSLS------DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (272)
Q Consensus 56 R~~L~EKd~~i~~Lq~r~s~le~~l~------~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~L 122 (272)
+..+......+.+++........--. .||+....+..-|.-|++-|.+..+.|++++.+++.=-+.|
T Consensus 17 ~~~~~~~~~l~~~l~~~~~~~~~l~~~~~dl~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l 89 (428)
T 4b4t_K 17 KPAVKSYASLLAQLNGTVNNNSALSNVNSDIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRI 89 (428)
T ss_dssp -------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhHHHHHHHHhhccchhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!