BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024142
(272 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ZQW8|U2AFA_ORYSJ Splicing factor U2af small subunit A OS=Oryza sativa subsp.
japonica GN=U2AF35A PE=2 SV=1
Length = 290
Score = 279 bits (713), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 154/239 (64%), Positives = 178/239 (74%), Gaps = 9/239 (3%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHMVG 60
MY R DMITPG+DAQGNP+DP KIQ FEDFYED+FEEL+KYGEIESL++CDN ADHM+G
Sbjct: 51 MYLRPDMITPGIDAQGNPIDPEKIQADFEDFYEDIFEELSKYGEIESLHVCDNFADHMIG 110
Query: 61 NVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 120
NVYVQFREE+QAARAL++L+GR+Y+GRPIIV+FSPV+DFREATCRQYEEN+CNRGGYCNF
Sbjct: 111 NVYVQFREEDQAARALQALTGRYYSGRPIIVEFSPVSDFREATCRQYEENSCNRGGYCNF 170
Query: 121 MHLKRISRDLRRQLFG---RYRRRHSRSRSRSRSPYRHRSHEDRSHSGHGR------RYD 171
MH+K I RDLR++LFG R RR HS RSRS SPY +R DR S R R
Sbjct: 171 MHVKEIGRDLRKRLFGHLHRSRRSHSHGRSRSPSPYHYRRDYDRRSSSRSRDHDDYYRGG 230
Query: 172 DRDKYYESRSRRHRSTSPSHRRGRSRSPGGRRYHSPVREGSEERRAKIEQWNREREQQE 230
D Y R S+ SR R SPVR+GSEERRA+IEQWNRERE +
Sbjct: 231 SHDYYRGGSRRSSERHRSSYDSDGSRRRHRSRTRSPVRDGSEERRAQIEQWNREREAAQ 289
>sp|Q9FMY5|U2AFB_ARATH Splicing factor U2af small subunit B OS=Arabidopsis thaliana
GN=U2AF35B PE=2 SV=1
Length = 283
Score = 265 bits (678), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 155/246 (63%), Positives = 180/246 (73%), Gaps = 33/246 (13%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHMVG 60
MYQR DMITPGVD QG PLDP KIQ+HFEDFYED+FEELNK+GE+ESLN+CDNLADHM+G
Sbjct: 51 MYQRPDMITPGVDPQGQPLDPSKIQDHFEDFYEDIFEELNKFGEVESLNVCDNLADHMIG 110
Query: 61 NVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 120
NVYV F+EE+ AA AL++L GRFY+GRPII DFSPVTDFREATCRQYEEN+CNRGGYCNF
Sbjct: 111 NVYVLFKEEDHAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNF 170
Query: 121 MHLKRISRDLRRQLFGRYRRRHSR-----------------SRSRSRSPYRHRSHEDRSH 163
MH+K+ISR+LRR+LFGRYRR + R SR R R R DR
Sbjct: 171 MHVKQISRELRRKLFGRYRRSYRRGSRSRSRSISPRRKREHSRERERGDVR-----DRDR 225
Query: 164 SGHGRRYDDR-DKYYESRSRRHRSTSPSHRRGRSRSPGGRRYHSPVREGSEERRAKIEQW 222
G+G+R DR +++ R R SP RSRSP VREGSEERRA+IEQW
Sbjct: 226 HGNGKRSSDRSERHDRDGGGRRRHGSPK----RSRSPRN------VREGSEERRARIEQW 275
Query: 223 NREREQ 228
NRER++
Sbjct: 276 NRERDE 281
>sp|Q9S709|U2AFA_ARATH Splicing factor U2af small subunit A OS=Arabidopsis thaliana
GN=U2AF35A PE=1 SV=1
Length = 296
Score = 254 bits (648), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 154/236 (65%), Positives = 175/236 (74%), Gaps = 14/236 (5%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHMVG 60
MYQR DMITPGVDAQG PLDPRKIQEHFEDF+EDLFEEL K+GEIESLNICDNLADHM+G
Sbjct: 51 MYQRPDMITPGVDAQGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADHMIG 110
Query: 61 NVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 120
NVYVQF+EE+QAA AL++L GRFY+GRPII DFSPVTDFREATCRQYEEN CNRGGYCNF
Sbjct: 111 NVYVQFKEEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNF 170
Query: 121 MHLKRISRDLRRQLFGRYRRRHSRSRSRSR-----SPYRHRSHEDRSHSGHGRRYDDRDK 175
MH+K +SR+LRR+LFGRYRR + R SP R ++ R S + DRD+
Sbjct: 171 MHVKLVSRELRRKLFGRYRRSYRRGSRSRSRSRSISPRNKRDNDRRDPSHREFSHRDRDR 230
Query: 176 YYESRSRRHRSTSPSHRRGRSRSPGGRRYHSP--------VREGSEERRAKIEQWN 223
+ RS+ S R+ R S GRR SP REGSEERRA+IEQWN
Sbjct: 231 EFYRHGSGKRSSERSERQERDGS-RGRRQASPKRGGSPGGGREGSEERRARIEQWN 285
>sp|Q6AUG0|U2AFB_ORYSJ Splicing factor U2af small subunit B OS=Oryza sativa subsp.
japonica GN=U2AF35B PE=2 SV=1
Length = 304
Score = 242 bits (618), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 105/135 (77%), Positives = 126/135 (93%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHMVG 60
MYQR DMITPGVDAQG P+DP K+QEHFEDFYED++EEL+K+GE+E+LN+CDNLADHM+G
Sbjct: 51 MYQRPDMITPGVDAQGQPIDPEKMQEHFEDFYEDIYEELSKFGEVETLNVCDNLADHMIG 110
Query: 61 NVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 120
NVYVQFREEEQA A +L GRFY+GRPIIV++SPVTDFREATCRQ+EEN+CNRGGYCNF
Sbjct: 111 NVYVQFREEEQAVAAHNALQGRFYSGRPIIVEYSPVTDFREATCRQFEENSCNRGGYCNF 170
Query: 121 MHLKRISRDLRRQLF 135
MH+K+I R+LRR+L+
Sbjct: 171 MHVKQIGRELRRKLY 185
>sp|Q7TP17|U2AF4_RAT Splicing factor U2AF 26 kDa subunit OS=Rattus norvegicus GN=U2af1l4
PE=2 SV=1
Length = 220
Score = 162 bits (409), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 87/174 (50%), Positives = 113/174 (64%), Gaps = 28/174 (16%)
Query: 23 KIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSG 81
++QEH+++F+E++F EL KYGEIE +N+CDNL DH+VGNVYV+FR EE A RA+ L+
Sbjct: 73 EVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERAVAELNN 132
Query: 82 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYRRR 141
R++ G+ + + SPVTDFRE+ CRQYE C RGG+CNFMHL+ ISR+LRRQL+GR
Sbjct: 133 RWFNGQAVHAELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISRNLRRQLYGR---- 188
Query: 142 HSRSRSRSRSPYRHRSHEDRSHSGHGRRYDDRDKYYESRSRRHRSTSPSHRRGR 195
R RSP RSH+GH R+R SP HR GR
Sbjct: 189 ----GPRHRSP-------PRSHTGH------------RPRERNRRRSPDHRHGR 219
>sp|Q8BGJ9|U2AF4_MOUSE Splicing factor U2AF 26 kDa subunit OS=Mus musculus GN=U2af1l4 PE=1
SV=1
Length = 220
Score = 162 bits (409), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 87/174 (50%), Positives = 113/174 (64%), Gaps = 28/174 (16%)
Query: 23 KIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSG 81
++QEH+++F+E++F EL KYGEIE +N+CDNL DH+VGNVYV+FR EE A RA+ L+
Sbjct: 73 EVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERAVAELNN 132
Query: 82 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYRRR 141
R++ G+ + + SPVTDFRE+ CRQYE C RGG+CNFMHL+ ISR+LRRQL+GR
Sbjct: 133 RWFNGQAVHAELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISRNLRRQLYGR---- 188
Query: 142 HSRSRSRSRSPYRHRSHEDRSHSGHGRRYDDRDKYYESRSRRHRSTSPSHRRGR 195
R RSP RSH+GH R+R SP HR GR
Sbjct: 189 ----GPRHRSP-------PRSHTGH------------RPRERNRRRSPDHRHGR 219
>sp|Q3T127|U2AF4_BOVIN Splicing factor U2AF 26 kDa subunit OS=Bos taurus GN=U2AF1L4 PE=2
SV=1
Length = 220
Score = 155 bits (393), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 69/114 (60%), Positives = 92/114 (80%), Gaps = 1/114 (0%)
Query: 23 KIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSG 81
++QEH+++F+E++F EL KYGEIE +N+CDNL DH+VGNVYV+FR EE A RA+ L+
Sbjct: 73 EVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERAVVELNN 132
Query: 82 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 135
R++ G+ + + SPVTDFRE+ CRQYE C RGG+CNFMHL+ ISRDLRRQL+
Sbjct: 133 RWFNGQAVHAELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISRDLRRQLY 186
>sp|Q9D883|U2AF1_MOUSE Splicing factor U2AF 35 kDa subunit OS=Mus musculus GN=U2af1 PE=1
SV=4
Length = 239
Score = 155 bits (391), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 68/114 (59%), Positives = 93/114 (81%), Gaps = 1/114 (0%)
Query: 23 KIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSG 81
++QEH+++F+E++F E+ KYGE+E +N+CDNL DH+VGNVYV+FR EE A +A+ L+
Sbjct: 73 EMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNN 132
Query: 82 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 135
R++ G+PI + SPVTDFREA CRQYE C RGG+CNFMHLK ISR+LRR+L+
Sbjct: 133 RWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELY 186
>sp|Q01081|U2AF1_HUMAN Splicing factor U2AF 35 kDa subunit OS=Homo sapiens GN=U2AF1 PE=1
SV=3
Length = 240
Score = 155 bits (391), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 68/114 (59%), Positives = 93/114 (81%), Gaps = 1/114 (0%)
Query: 23 KIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSG 81
++QEH+++F+E++F E+ KYGE+E +N+CDNL DH+VGNVYV+FR EE A +A+ L+
Sbjct: 73 EMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNN 132
Query: 82 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 135
R++ G+PI + SPVTDFREA CRQYE C RGG+CNFMHLK ISR+LRR+L+
Sbjct: 133 RWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELY 186
>sp|A1A4K8|U2AF1_BOVIN Splicing factor U2AF 35 kDa subunit OS=Bos taurus GN=U2AF1 PE=2
SV=1
Length = 237
Score = 155 bits (391), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 68/114 (59%), Positives = 93/114 (81%), Gaps = 1/114 (0%)
Query: 23 KIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSG 81
++QEH+++F+E++F E+ KYGE+E +N+CDNL DH+VGNVYV+FR EE A +A+ L+
Sbjct: 73 EMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNN 132
Query: 82 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 135
R++ G+PI + SPVTDFREA CRQYE C RGG+CNFMHLK ISR+LRR+L+
Sbjct: 133 RWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELY 186
>sp|Q94535|U2AF1_DROME Splicing factor U2af 38 kDa subunit OS=Drosophila melanogaster
GN=U2af38 PE=1 SV=2
Length = 264
Score = 153 bits (386), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 67/114 (58%), Positives = 89/114 (78%), Gaps = 1/114 (0%)
Query: 23 KIQEHFEDFYEDLFEEL-NKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSG 81
++QEH+++F+ED+F E +KYGEIE +N+CDNL DH+VGNVY++FR E A +A L+
Sbjct: 75 EMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRNEADAEKAANDLNN 134
Query: 82 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 135
R++ GRP+ + SPVTDFREA CRQYE C R G+CNFMHLK ISR+LRR L+
Sbjct: 135 RWFGGRPVYSELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPISRELRRYLY 188
>sp|Q8WU68|U2AF4_HUMAN Splicing factor U2AF 26 kDa subunit OS=Homo sapiens GN=U2AF1L4 PE=1
SV=2
Length = 220
Score = 149 bits (376), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 78/147 (53%), Positives = 104/147 (70%), Gaps = 1/147 (0%)
Query: 23 KIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSG 81
++QEH++ F+E++F EL KYGEIE +N+CDNL DH+VGNVYV+FR EE RA+ LS
Sbjct: 73 EVQEHYDSFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDGERAVAELSN 132
Query: 82 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYRRR 141
R++ G+ + + SPVTDFRE+ CRQYE C RGG+CNFMHL+ IS++L+RQL+GR RR
Sbjct: 133 RWFNGQAVHGELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISQNLQRQLYGRGPRR 192
Query: 142 HSRSRSRSRSPYRHRSHEDRSHSGHGR 168
S R + R R+H HGR
Sbjct: 193 RSPPRFHTGHHPRERNHRCSPDHWHGR 219
>sp|Q09176|U2AF1_SCHPO Splicing factor U2AF 23 kDa subunit OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAP8A3.06 PE=1 SV=2
Length = 216
Score = 145 bits (367), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 66/131 (50%), Positives = 88/131 (67%)
Query: 10 PGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREE 69
P + G R++ E F+ FYED+F E +KYGE+E L +CDN+ DH+VGNVYV+F+ E
Sbjct: 55 PIHEPNGKKFTQRELAEQFDAFYEDMFCEFSKYGEVEQLVVCDNVGDHLVGNVYVRFKYE 114
Query: 70 EQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRD 129
E A A+ L+ R+Y+ RP+ + SPVTDFREA CRQ+E + C RGG CNFMH K+ S
Sbjct: 115 ESAQNAIDDLNSRWYSQRPVYAELSPVTDFREACCRQHETSECQRGGLCNFMHAKKPSPQ 174
Query: 130 LRRQLFGRYRR 140
L R L R+
Sbjct: 175 LLRDLVLAQRK 185
>sp|Q15695|U2AFL_HUMAN U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa
subunit-related protein 1 OS=Homo sapiens GN=ZRSR1 PE=2
SV=2
Length = 479
Score = 99.0 bits (245), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 98/203 (48%), Gaps = 36/203 (17%)
Query: 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYA 85
+ F DFYED+ E G++ + NL H+ GNVYVQ++ EE+ AL +GR+YA
Sbjct: 239 QQFLDFYEDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYA 298
Query: 86 GRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKR--------ISRDL------- 130
GR + +F PVT ++ A C +E C RG +CNF+H+ R +RD+
Sbjct: 299 GRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHVFRNPNNEFWEANRDIYLSSDQT 358
Query: 131 ---------RRQLFGRYRRRHSRSRSRSRSP-----YRHRSHEDRSHSGH-GRRYDDRDK 175
RR+ G + +SR R R R+P Y+ +R S H G++ R
Sbjct: 359 GSSFGKNSERREKMGHHDHYYSRQRGR-RNPSPDHTYKRNGESERKKSSHRGKKSHKR-- 415
Query: 176 YYESRSRRHRSTSPSHRRGRSRS 198
+ R R SPS R R RS
Sbjct: 416 ---TSKSRERHNSPSRGRNRHRS 435
>sp|Q15696|U2AFM_HUMAN U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa
subunit-related protein 2 OS=Homo sapiens GN=ZRSR2 PE=1
SV=2
Length = 482
Score = 97.8 bits (242), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 61/100 (61%)
Query: 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYA 85
+ F DFYED+ E G++ + NL H+ GNVYVQ++ EE+ AL +GR+YA
Sbjct: 234 QQFLDFYEDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYA 293
Query: 86 GRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKR 125
GR + +F PVT ++ A C +E C RG +CNF+H+ R
Sbjct: 294 GRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHVFR 333
>sp|Q64707|U2AFL_MOUSE U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa
subunit-related protein 1 OS=Mus musculus GN=Zrsr1 PE=2
SV=1
Length = 428
Score = 95.1 bits (235), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 60/100 (60%)
Query: 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYA 85
+ F DFY D+ E G++ + NL H+ GNVYVQ++ EE+ AL +GR+YA
Sbjct: 225 QQFLDFYHDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYA 284
Query: 86 GRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKR 125
GR + +F PVT ++ A C +E C +G +CNF+H+ R
Sbjct: 285 GRQLQCEFCPVTRWKVAICGLFEMQKCPKGKHCNFLHVFR 324
>sp|Q62377|U2AFM_MOUSE U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa
subunit-related protein 2 OS=Mus musculus GN=Zrsr2 PE=2
SV=1
Length = 462
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 65/117 (55%), Gaps = 4/117 (3%)
Query: 23 KIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGR 82
+I + F DFY D+ E G++ + NL H+ GNVYVQ++ EE A +GR
Sbjct: 235 EIYQQFLDFYYDVLPEFKSVGKVIQFKVSCNLEPHLRGNVYVQYQSEEDCQAAFSVFNGR 294
Query: 83 FYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRIS----RDLRRQLF 135
+YAGR + +F PVT ++ A C +E C RG +CNF+H+ R RD R L+
Sbjct: 295 WYAGRQLQCEFCPVTRWKMAICGLFEVQQCPRGKHCNFLHVFRNPNNEYRDANRDLY 351
>sp|Q6YVX9|C3H16_ORYSJ Zinc finger CCCH domain-containing protein 16 OS=Oryza sativa
subsp. japonica GN=Os02g0557500 PE=2 SV=2
Length = 678
Score = 93.6 bits (231), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 68/106 (64%), Gaps = 3/106 (2%)
Query: 23 KIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGR 82
+I++ +E+FYED+ E K+GE+ + +C N + H+ GNVYV ++ + A A S++GR
Sbjct: 222 EIEQSYEEFYEDVHTEFLKFGELVNFKVCRNGSLHLRGNVYVHYKSLDSALIAYSSMNGR 281
Query: 83 FYAGRPIIVDFSPVTDFREATCRQYEEN---TCNRGGYCNFMHLKR 125
++AG+ I +F VT ++ A C +Y + TC+RG CNF+H R
Sbjct: 282 YFAGKQITCEFVAVTRWKVAICGEYMRSRFKTCSRGIACNFIHCFR 327
>sp|Q9SY74|C3H5_ARATH Zinc finger CCCH domain-containing protein 5 OS=Arabidopsis
thaliana GN=At1g10320 PE=2 SV=2
Length = 757
Score = 91.7 bits (226), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 66/101 (65%), Gaps = 3/101 (2%)
Query: 28 FEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGR 87
+E+FYED+ E KYGE+ + +C N + H+ GNVYV +R E A A +S++GR++AG+
Sbjct: 304 YEEFYEDVHTEFLKYGELVNFKVCRNGSFHLKGNVYVHYRSLESAILAYQSINGRYFAGK 363
Query: 88 PIIVDFSPVTDFREATCRQYEEN---TCNRGGYCNFMHLKR 125
+ +F ++ ++ A C +Y ++ TC+RG CNF+H R
Sbjct: 364 QVNCEFVNISRWKVAICGEYMKSRLKTCSRGSACNFIHCFR 404
>sp|P90978|U2AF2_CAEEL Splicing factor U2AF 65 kDa subunit OS=Caenorhabditis elegans
GN=uaf-1 PE=2 SV=2
Length = 496
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 20 DPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM---VGNVYVQFREEEQAARAL 76
D K + +E+ ED+ +E +KYG + SL I DH VG V+V+F RA
Sbjct: 409 DELKADDEYEEILEDVRDECSKYGIVRSLEIPRPYEDHPVPGVGKVFVEFASTSDCQRAQ 468
Query: 77 KSLSGRFYAGRPIIVDF 93
+L+GR +A R ++ +
Sbjct: 469 AALTGRKFANRTVVTSY 485
>sp|P90727|U2AF2_CAEBR Splicing factor U2AF 65 kDa subunit OS=Caenorhabditis briggsae
GN=uaf-1 PE=3 SV=2
Length = 488
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHM---VGNVYVQFREEEQAARALKSLSGR 82
E +E+ ED+ EE +KYG + SL I DH VG V+V+F RA +L+GR
Sbjct: 406 EDYEEILEDVREECSKYGIVRSLEIPRPYDDHPVPGVGKVFVEFATTSDCQRAQAALTGR 465
Query: 83 FYAGRPIIVDF 93
+A R ++ +
Sbjct: 466 KFANRTVVTSY 476
>sp|Q8BGC0|HTSF1_MOUSE HIV Tat-specific factor 1 homolog OS=Mus musculus GN=Htatsf1 PE=1
SV=1
Length = 757
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 76/185 (41%), Gaps = 12/185 (6%)
Query: 33 EDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVD 92
EDL E +K+G+I L + D H G V FRE E+A +++L GR++ GR I
Sbjct: 290 EDLRVECSKFGQIRKLLLFDR---HPDGVASVSFREPEEADHCIQTLDGRWFGGRQITAQ 346
Query: 93 -FSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQ--LFGRYRRRHSRSRSRS 149
+ TD++ E G+ F++ SR LRR + G R SR R S
Sbjct: 347 AWDGTTDYQ--VEETSREREERLRGWEAFLNAPEASRGLRRMDSIAGSERPGPSRMRHFS 404
Query: 150 RSPYRHRSHEDRSHSGHG-RRYDDRDKYYESRSRRHRSTSPSHRRGRSRSPGGRRYHSPV 208
P + +G D +K+ ++ S + + GG P
Sbjct: 405 EHPSMSNMKAQEATTGMAFEETIDENKFEKAEEGGESEGDASEKDAKE---GGSDGDHPE 461
Query: 209 REGSE 213
REG E
Sbjct: 462 REGGE 466
>sp|Q2QZL4|U2A2B_ORYSJ Splicing factor U2af large subunit B OS=Oryza sativa subsp.
japonica GN=U2AF65B PE=2 SV=2
Length = 548
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Query: 20 DPRKIQEHFEDFYEDLFEELNKYGEIESLNIC----DNLADHMVGNVYVQFREEEQAARA 75
D K E +ED ED+ E KYG + + I L VG V++++ + + A +A
Sbjct: 458 DELKDDEEYEDIMEDMRLEAGKYGNLIKVVIPRPDPSGLPVAGVGKVFLEYADVDGATKA 517
Query: 76 LKSLSGRFYAGRPIIVDFSPVTDFREA 102
++ GR + G P++ F P F A
Sbjct: 518 KTAMHGRKFGGNPVVAVFYPENKFSSA 544
>sp|Q24562|U2AF2_DROME Splicing factor U2AF 50 kDa subunit OS=Drosophila melanogaster
GN=U2af50 PE=2 SV=1
Length = 416
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 12/92 (13%)
Query: 5 LDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNI---CDNLADHMVGN 61
L+M+TP D + +E +ED ED+ EE KYG + S+ I + + G
Sbjct: 323 LNMVTP---------DELRDEEEYEDILEDIKEECTKYGVVRSVEIPRPIEGVEVPGCGK 373
Query: 62 VYVQFREEEQAARALKSLSGRFYAGRPIIVDF 93
V+V+F +A ++L+GR ++ R ++ +
Sbjct: 374 VFVEFNSVLDCQKAQQALTGRKFSDRVVVTSY 405
>sp|O43719|HTSF1_HUMAN HIV Tat-specific factor 1 OS=Homo sapiens GN=HTATSF1 PE=1 SV=1
Length = 755
Score = 40.8 bits (94), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 82/197 (41%), Gaps = 17/197 (8%)
Query: 7 MITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQF 66
M P +D + +PL +I+E DL E +K+G+I L + D H G V F
Sbjct: 271 MFHP-MDFEDDPLVLNEIRE-------DLRVECSKFGQIRKLLLFDR---HPDGVASVSF 319
Query: 67 REEEQAARALKSLSGRFYAGRPIIVD-FSPVTDFREATCRQYEENTCNRGGYCNFMHLKR 125
R+ E+A +++L GR++ GR I + TD++ E G+ F++
Sbjct: 320 RDPEEADYCIQTLDGRWFGGRQITAQAWDGTTDYQ--VEETSREREERLRGWEAFLNAPE 377
Query: 126 ISRDLRRQLFGRYRRRHSRSRSRSRSPYRHRSHEDRSHSGHGRRYD---DRDKYYESRSR 182
+R LRR R SR+R S + S + + G ++ D K+ ++
Sbjct: 378 ANRGLRRSDSVSASERAGPSRARHFSEHPSTSKMNAQETATGMAFEEPIDEKKFEKTEDG 437
Query: 183 RHRSTSPSHRRGRSRSP 199
S + SP
Sbjct: 438 GEFEEGASENNAKESSP 454
>sp|Q5RB63|HTSF1_PONAB HIV Tat-specific factor 1 homolog OS=Pongo abelii GN=HTATSF1 PE=2
SV=1
Length = 754
Score = 40.8 bits (94), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 71/171 (41%), Gaps = 9/171 (5%)
Query: 33 EDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVD 92
EDL E +K+G+I L + D H G V FR+ E+A +++L GR++ GR I
Sbjct: 289 EDLRVECSKFGQIRKLLLFDR---HPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQ 345
Query: 93 -FSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYRRRHSRSRSRSRS 151
+ TD++ E G+ F++ +R LRR R SR+R S
Sbjct: 346 AWDGTTDYQ--VEETSREREERLRGWEAFLNAPEANRGLRRSDSVSASERAGPSRARHFS 403
Query: 152 PYRHRSHEDRSHSGHGRRYD---DRDKYYESRSRRHRSTSPSHRRGRSRSP 199
+ S + + G ++ D K+ ++ S + SP
Sbjct: 404 EHPSTSKMNAQETATGMAFEEPIDEKKFEKTEDGGEFEEGASENNAKESSP 454
>sp|Q10B98|C3H25_ORYSJ Zinc finger CCCH domain-containing protein 25 OS=Oryza sativa
subsp. japonica GN=Os03g0826400 PE=2 SV=1
Length = 312
Score = 39.3 bits (90), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 15/104 (14%)
Query: 34 DLFEELNKYGEIESLNIC-DNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVD 92
DL +YGE+ +N+ D G ++ + ++ A+ +L+G GR + VD
Sbjct: 51 DLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFLAYEDQRSTILAVDNLNGAKVLGRIVRVD 110
Query: 93 FSPVTDF------------REA--TCRQYEENTCNRGGYCNFMH 122
REA C +++ CNRG C + H
Sbjct: 111 HVSKYKKKEEEDEEELQKKREARGVCYAFQKGECNRGASCRYSH 154
>sp|Q8WXF0|SRS12_HUMAN Serine/arginine-rich splicing factor 12 OS=Homo sapiens GN=SRSF12
PE=2 SV=1
Length = 261
Score = 35.0 bits (79), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 33 EDLFEELNKYGEIESLNI-CDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIV 91
EDL E +YG I + I D G YVQF + A AL +L+ ++ GR I +
Sbjct: 24 EDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALYNLNRKWVCGRQIEI 83
Query: 92 DFS 94
F+
Sbjct: 84 QFA 86
>sp|P92964|RSP31_ARATH Arginine/serine-rich-splicing factor RSP31 OS=Arabidopsis thaliana
GN=RSP31 PE=1 SV=2
Length = 264
Score = 34.3 bits (77), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 79/200 (39%), Gaps = 44/200 (22%)
Query: 19 LDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKS 78
DP + +EH D+ + YG++ ++ I N + +VQF +E A +AL++
Sbjct: 100 FDPIRTKEH------DIEKHFEPYGKVTNVRIRRNFS-------FVQFETQEDATKALEA 146
Query: 79 LSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRY 138
R + V+++ D +E GG R RR L Y
Sbjct: 147 TQRSKILDRVVSVEYALKDD---------DERDDRNGG-----------RSPRRSLSPVY 186
Query: 139 RRRHSRSRSRSRSPYRHRSHEDRSHSGHGRRYDDRDKYYESRSRRHRSTSPSHRR----- 193
RRR S R SP + R R +GR Y+ + R SP + R
Sbjct: 187 RRRPSPDYGRRPSPGQGR----RPSPDYGRARSPEYDRYKGPAAYERRRSPDYGRRSSDY 242
Query: 194 GRSRSPGGRRYHS--PVREG 211
GR RSPG RY S PV G
Sbjct: 243 GRQRSPGYDRYRSRSPVPRG 262
>sp|Q5RCY1|UHMK1_PONAB Serine/threonine-protein kinase Kist OS=Pongo abelii GN=UHMK1 PE=2
SV=1
Length = 419
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 37 EELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 96
EE KYG + SL + G V+V++ + A K L+GR + G+ ++ F P+
Sbjct: 349 EECQKYGPVVSLLVPKENPGR--GQVFVEYANAGDSKAAQKLLTGRMFDGKFVVATFYPL 406
Query: 97 TDFR 100
+ ++
Sbjct: 407 SAYK 410
>sp|Q8TAS1|UHMK1_HUMAN Serine/threonine-protein kinase Kist OS=Homo sapiens GN=UHMK1 PE=1
SV=2
Length = 419
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 37 EELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 96
EE KYG + SL + G V+V++ + A K L+GR + G+ ++ F P+
Sbjct: 349 EECQKYGPVVSLLVPKENPGR--GQVFVEYANAGDSKAAQKLLTGRMFDGKFVVATFYPL 406
Query: 97 TDFR 100
+ ++
Sbjct: 407 SAYK 410
>sp|Q86U06|RBM23_HUMAN Probable RNA-binding protein 23 OS=Homo sapiens GN=RBM23 PE=1 SV=1
Length = 439
Score = 31.6 bits (70), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 7/69 (10%)
Query: 27 HF---EDFYEDLFEELNKYGEIESLNIC-DNLADHMVGNVYVQFREEEQAARALKSLSGR 82
HF ED +FE +G+I+++ + D+ G ++ F + E A RAL+ L+G
Sbjct: 271 HFNITEDMLRGIFE---PFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGF 327
Query: 83 FYAGRPIIV 91
AGRP+ V
Sbjct: 328 ELAGRPMRV 336
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.135 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 115,524,196
Number of Sequences: 539616
Number of extensions: 5322532
Number of successful extensions: 34837
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 614
Number of HSP's that attempted gapping in prelim test: 24365
Number of HSP's gapped (non-prelim): 5737
length of query: 272
length of database: 191,569,459
effective HSP length: 116
effective length of query: 156
effective length of database: 128,974,003
effective search space: 20119944468
effective search space used: 20119944468
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)