BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024143
         (272 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P96108|OTC_THEMA Ornithine carbamoyltransferase OS=Thermotoga maritima (strain ATCC
           43589 / MSB8 / DSM 3109 / JCM 10099) GN=argF PE=1 SV=2
          Length = 313

 Score = 31.6 bits (70), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 4/72 (5%)

Query: 200 PIGRSPRTDVLLKAEKVILEFGGCVLRLAGLYKADRGAHV----YWLQKGTVDSRPDHIL 255
           P    PR+DV  + ++++ E  G V   + L +A  GA V     W   G  D   + + 
Sbjct: 188 PEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYTDVWASMGEEDKEKERMA 247

Query: 256 NLIHYEVNTLVL 267
            L  Y+VN  V+
Sbjct: 248 LLKPYQVNERVM 259


>sp|Q4QPI4|MSBA_HAEI8 Lipid A export ATP-binding/permease protein MsbA OS=Haemophilus
           influenzae (strain 86-028NP) GN=msbA PE=3 SV=1
          Length = 587

 Score = 31.2 bits (69), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 31/66 (46%)

Query: 207 TDVLLKAEKVILEFGGCVLRLAGLYKADRGAHVYWLQKGTVDSRPDHILNLIHYEVNTLV 266
           T+ +LK  KV++ FGG  +      K         ++  T DS  D ++ +I       V
Sbjct: 211 TEQMLKGHKVVISFGGQFVEEERFNKVSNNMRRKGMKMVTADSISDPVVQIIASLALVAV 270

Query: 267 LFIAST 272
           LF+A+T
Sbjct: 271 LFLATT 276


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.133    0.402 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,843,226
Number of Sequences: 539616
Number of extensions: 4176793
Number of successful extensions: 10534
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 10518
Number of HSP's gapped (non-prelim): 16
length of query: 272
length of database: 191,569,459
effective HSP length: 116
effective length of query: 156
effective length of database: 128,974,003
effective search space: 20119944468
effective search space used: 20119944468
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)