Query 024144
Match_columns 272
No_of_seqs 61 out of 63
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 03:09:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024144.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024144hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a8j_B Elongator complex prote 98.8 7.4E-08 2.5E-12 88.5 13.2 106 147-258 101-223 (270)
2 3bs4_A Uncharacterized protein 98.0 0.00017 6E-09 65.2 15.4 163 32-212 33-213 (260)
3 4a8j_C Elongator complex prote 97.9 0.00028 9.5E-09 65.3 15.6 169 15-213 31-231 (280)
4 2zts_A Putative uncharacterize 95.8 0.3 1E-05 40.4 14.0 172 16-211 26-206 (251)
5 2dr3_A UPF0273 protein PH0284; 94.8 0.53 1.8E-05 38.9 12.5 140 53-212 49-196 (247)
6 3bh0_A DNAB-like replicative h 94.5 0.61 2.1E-05 41.9 12.9 92 148-253 183-294 (315)
7 2i1q_A DNA repair and recombin 94.4 1.1 3.6E-05 39.9 14.2 150 56-258 143-316 (322)
8 2z43_A DNA repair and recombin 93.1 0.94 3.2E-05 40.7 11.6 153 55-258 141-315 (324)
9 2w0m_A SSO2452; RECA, SSPF, un 92.7 3.3 0.00011 33.4 15.0 138 54-212 50-191 (235)
10 2cvh_A DNA repair and recombin 90.3 2.1 7.2E-05 34.7 9.7 153 53-258 43-212 (220)
11 1q57_A DNA primase/helicase; d 88.5 9.2 0.00031 36.2 14.1 26 55-80 271-298 (503)
12 4a8j_A Elongator complex prote 88.2 0.96 3.3E-05 43.0 6.9 89 125-216 199-295 (361)
13 3bgw_A DNAB-like replicative h 86.6 7.1 0.00024 37.1 12.0 20 54-73 224-243 (444)
14 1v5w_A DMC1, meiotic recombina 83.6 15 0.00052 33.2 12.3 39 54-92 155-195 (343)
15 2q6t_A DNAB replication FORK h 83.5 20 0.0007 33.4 13.5 30 54-83 228-259 (444)
16 3cmu_A Protein RECA, recombina 80.8 2 6.7E-05 49.0 6.2 120 52-212 59-202 (2050)
17 2r6a_A DNAB helicase, replicat 77.6 37 0.0013 31.7 13.1 91 148-252 315-426 (454)
18 1xp8_A RECA protein, recombina 76.6 6.1 0.00021 36.8 7.3 120 54-214 101-244 (366)
19 1n0w_A DNA repair protein RAD5 73.0 36 0.0012 27.6 10.7 28 54-81 57-86 (243)
20 3lda_A DNA repair protein RAD5 64.6 79 0.0027 29.6 12.1 90 148-258 275-388 (400)
21 3cmw_A Protein RECA, recombina 58.5 10 0.00034 42.6 5.4 119 53-212 60-202 (1706)
22 1u94_A RECA protein, recombina 57.1 25 0.00087 32.4 7.2 27 53-81 89-115 (356)
23 3cmw_A Protein RECA, recombina 52.9 16 0.00056 40.9 5.9 134 31-212 394-551 (1706)
24 2ehv_A Hypothetical protein PH 51.8 94 0.0032 25.1 12.3 137 53-211 57-206 (251)
25 2zr9_A Protein RECA, recombina 50.1 36 0.0012 31.1 6.9 116 54-212 88-229 (349)
26 3cmu_A Protein RECA, recombina 43.5 1.2E+02 0.004 35.0 10.8 119 53-212 409-551 (2050)
27 3hr8_A Protein RECA; alpha and 29.7 2.7E+02 0.0092 25.6 9.4 65 148-212 141-229 (356)
28 1cr0_A DNA primase/helicase; R 25.1 1.3E+02 0.0043 25.7 6.0 66 148-214 149-236 (296)
29 4dm9_A Ubiquitin carboxyl-term 23.4 57 0.002 28.8 3.4 32 61-97 9-41 (228)
30 1xd3_A Ubiquitin carboxyl-term 22.6 68 0.0023 28.3 3.7 32 61-97 7-39 (230)
31 2wdt_A Ubiquitin carboxyl-term 22.4 63 0.0022 28.6 3.5 31 61-97 8-39 (232)
32 1cmx_A Protein (ubiquitin YUH1 21.8 66 0.0023 28.6 3.5 31 60-95 8-38 (235)
33 3r8s_4 50S ribosomal protein L 21.3 50 0.0017 21.9 1.9 13 242-254 15-27 (38)
34 3rii_A Ubiquitin carboxyl-term 20.5 74 0.0025 28.1 3.5 31 61-97 14-45 (233)
35 1tf7_A KAIC; homohexamer, hexa 20.4 5.4E+02 0.018 24.2 11.5 63 148-212 373-442 (525)
No 1
>4a8j_B Elongator complex protein 5; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_B
Probab=98.77 E-value=7.4e-08 Score=88.48 Aligned_cols=106 Identities=15% Similarity=0.243 Sum_probs=81.9
Q ss_pred cEEEEEechhHHHHhcChHHHHHHHHhhhcCCceeEEEeeeccccc-------------chhhHhHHhhhheeEEEeecC
Q 024144 147 RFSIAIDSVSEMVRHASISSVAGILSNLRSHDQVSSIFWLLHSDLH-------------EIKFTSVLEYLSSMVASVEPF 213 (272)
Q Consensus 147 ~~tVaIDSLS~LL~h~s~~~vc~lL~~Lr~~~~vssVl~LLHsDLH-------------e~~~v~ALe~LSstvvtv~P~ 213 (272)
+..|+||||..++. ..+.++|+.+-. | -.++++--|.|+. .|....-|.|||+++++|.|.
T Consensus 101 k~LVIIDSLN~l~~----~~L~~FlsSi~s-P-~~sLv~vYH~DvP~~~~~~~~~~n~y~Ps~LtLL~ylATTIl~v~~~ 174 (270)
T 4a8j_B 101 KHMVIIDSLNYIST----EYITRFLSEIAS-P-HCTMVATYHKDIKDENRTVIPDWNNNYPDKLTLLQFMATTIVDIDVV 174 (270)
T ss_dssp CEEEEESCGGGSCG----GGHHHHHHHHCC-T-TEEEEEEEETTSCCC------CTTBCCCCHHHHHHHHCSEEEEEEEC
T ss_pred ceEEEEecCcchhh----hhHHHHHHHhhc-C-CcEEEEEecCCCCCCCccccccccCCCCChHHHHHHhhhheEEEecC
Confidence 48999999999986 578888888885 5 4589999999974 566778899999999999999
Q ss_pred Cccccccccccchhhhh----hccccceEEEEEEeccCCcEEEEEEEEE
Q 024144 214 NQAAFGQRVDLENLSML----EQNFRKGKFHVRFKRRNGRVRVMKYLLS 258 (272)
Q Consensus 214 ~~~~~~~~~~~~~~~~l----~~n~~k~~~~vr~KrRnGRV~~~~~~~~ 258 (272)
.....-.|.--+.++-+ .-|...=++++..||++||=-.--|.|.
T Consensus 175 ~~~~~deE~l~~~l~k~~~P~glN~~~f~l~ltnrRKSGRsl~y~f~id 223 (270)
T 4a8j_B 175 LTGTLDTEEVSELLNEFRIPRGLNNDIFQLRLVNKRKSGRSLEYDFIVN 223 (270)
T ss_dssp CCSSCCHHHHHHHHHTTCCCSSCSCSEEEEEEEEECTTSCEEEEEEEEE
T ss_pred CCCCccHHHHHHHhhheecccccCCCeEEEEEEeccccCcceEEEEEEc
Confidence 88765554322222222 3466777888899999999877777664
No 2
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=98.00 E-value=0.00017 Score=65.20 Aligned_cols=163 Identities=13% Similarity=0.114 Sum_probs=99.6
Q ss_pred chhhHHHHHHHHHHHHHHhhccccceeEEEEeecChHHHHHHHhhcCcCccCC--CCeEEEEeccCCCCCCcccccCCcc
Q 024144 32 FGFDVFNYVLTQLSNYILAGKSQSRGLVVVAYSRSPSFYVDLLKRRGIDIASS--HDWIHILDCYTDPLGWKNWLIDKDI 109 (272)
Q Consensus 32 ~g~~v~~h~~~~l~s~i~a~~~q~~~Vhvl~fe~Spe~y~~~lk~~G~d~~s~--~~ri~i~D~ysDPLGW~~~~~~~~~ 109 (272)
+|..+..+|+ .++..+++.+.+++||-+|++++.-++..|+|.+.. +.++.++|.|++..+......
T Consensus 33 ~~~~l~~qfl-------~~g~~~Ge~~~~~~~~e~~~~l~~~~~~~G~dl~~~~~~g~l~i~d~~~~~~~~~~~~~---- 101 (260)
T 3bs4_A 33 RGKDILFYIL-------SRKLKSDNLVGMFSISYPLQLIIRILSRFGVDVIKYLENHRLAIVDTFGSFHGIKATMP---- 101 (260)
T ss_dssp CHHHHHHHHH-------HHHHHTTCEEEEEECSSCHHHHHHHHHHTTCCHHHHHHTTSEEEECHHHHHHTC---CT----
T ss_pred cHHHHHHHHH-------HHHHHCCCcEEEEEEeCCHHHHHHHHHHcCCCHHHHhhCCcEEEEEccccccccccccc----
Confidence 4565445544 367888999999999999999999999999997641 357999999885554333110
Q ss_pred ccccccccccc--cchhhhhHHHHHHHHhccC---ccC-CCCCcEEEEEechhHHHHhcChHHHHHHHHhhh--------
Q 024144 110 SQEASSLSSFC--QDVRNLDKLYSLIIEQGKG---LIG-QGKDRFSIAIDSVSEMVRHASISSVAGILSNLR-------- 175 (272)
Q Consensus 110 ~~~~s~~~~~~--~~v~~L~sl~~~i~e~~~~---~~~-~~k~~~tVaIDSLS~LL~h~s~~~vc~lL~~Lr-------- 175 (272)
..+... -++..+-.....+++..|. ... -+..|+.++||||+.+..-.+....-+.+.++.
T Consensus 102 -----~v~~~~~e~d~~~l~~~i~~iv~~~~~~~~i~~~~~~~rvv~vidsldsl~~~~~~~~~~~~~~~ll~~~~~~~~ 176 (260)
T 3bs4_A 102 -----GVWYLEGMLSSETLPIKYAKAVEDHKKVWMDLNLFEGRELYGFAISMSGYLEVFTPEETLRYLETSAEVRYGHPA 176 (260)
T ss_dssp -----TEECCCSCCCTTTHHHHHHHHHHHHHHHHHHTTCSTTCCEEEEEETGGGGGGTSCHHHHHHHHHHHHHHHHHCHH
T ss_pred -----ceecccccCCHHHHHHHHHHHHHhhccccchhhccCCceEEEEEeecchHHHHhChhhHHHHHHHHHHhhhhHHH
Confidence 000000 0233332212344443100 001 123457788888887777666655544444442
Q ss_pred --cCCceeEEEeeecccccchhhHhHHhhhheeEEEeec
Q 024144 176 --SHDQVSSIFWLLHSDLHEIKFTSVLEYLSSMVASVEP 212 (272)
Q Consensus 176 --~~~~vssVl~LLHsDLHe~~~v~ALe~LSstvvtv~P 212 (272)
+...+..++ ++. |.+.+.....+.++|-.||.+.-
T Consensus 177 ~~~~~~~ttil-~~~-~~~~~~~~~~l~~laD~VI~lr~ 213 (260)
T 3bs4_A 177 YKKYPRGTNFW-LWE-GVKDKRVLLSVYRRADYVLKTRS 213 (260)
T ss_dssp HHSSCCCEEEE-EEE-SCSCHHHHHHHHHHCSEEEEEEE
T ss_pred HhccCCcEEEE-EEC-CCcccccccceEEEeeEEEEEEE
Confidence 214454444 455 77777777889999999999854
No 3
>4a8j_C Elongator complex protein 6; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_C
Probab=97.93 E-value=0.00028 Score=65.28 Aligned_cols=169 Identities=13% Similarity=0.150 Sum_probs=110.1
Q ss_pred cC-CCCCceeecccCCCCchhhHHHHHHHHHHHHHHhhc-------------cccceeEEEEeecChHHHHHHHhhcCcC
Q 024144 15 EG-EHAPALTIKDSKASPFGFDVFNYVLTQLSNYILAGK-------------SQSRGLVVVAYSRSPSFYVDLLKRRGID 80 (272)
Q Consensus 15 ~g-e~ap~l~i~Dsl~~~~g~~v~~h~~~~l~s~i~a~~-------------~q~~~Vhvl~fe~Spe~y~~~lk~~G~d 80 (272)
++ +..-+++|...+.+..-=.+-.+ +.+.+.... .....|+++.|-+.+++|.+.+||-|+|
T Consensus 31 ~~~~~~~L~liT~~~gTsp~WLin~l----ves~L~G~~~~~n~~~~~~~~~~~~~~Vv~~SF~~~~~fy~~~~~Klgid 106 (280)
T 4a8j_C 31 QDSNSHNLFFITHQSCTQPLWMINAL----VETHVLGSPSSLNESSSSMLPSSTRSHAVLASFIHEQNYFTNSLNKLKIP 106 (280)
T ss_dssp TSSSCCEEEEEEECTTSCCHHHHHHH----HHHHHHSSCHHHHCC----CCCCCCCEEEEEESSSCHHHHHHHHHHTTCC
T ss_pred CCCCCceEEEEccccCCChHHHHHHH----HHHHhcCCcccccccccccccCCCCceEEEEEeecCHHHHHHHHHHhCCC
Confidence 56 67788889999855432333333 223332111 1335799999999999999999999999
Q ss_pred ccCCCCeEEEEeccCCCCCCccc-ccCCccccccccccccccchhhhhHHHHHHHHhccCccCCCCCcEEEEEechhHHH
Q 024144 81 IASSHDWIHILDCYTDPLGWKNW-LIDKDISQEASSLSSFCQDVRNLDKLYSLIIEQGKGLIGQGKDRFSIAIDSVSEMV 159 (272)
Q Consensus 81 ~~s~~~ri~i~D~ysDPLGW~~~-~~~~~~~~~~s~~~~~~~~v~~L~sl~~~i~e~~~~~~~~~k~~~tVaIDSLS~LL 159 (272)
. .++.|+|||||.. .++ .. .+ .. . ..+++.+++..++... ++ +.+|+||..-.||
T Consensus 107 l----~~f~fvD~~tdl~--~~~~~~--kp---~~---~---~l~~v~~~f~~~i~~~------~~-~~vlIldqpdlLL 162 (280)
T 4a8j_C 107 S----NNYNVLDFLSDFI--VNNIHN--KP---RD---K---ILSDVLAKFSAAIQNN------PT-DTIVIIEQPELLL 162 (280)
T ss_dssp G----GGEEEEESSTTHH--HHHTTT--CC---HH---H---HHHHHHHHHHHHHHTS------TT-SEEEEEECGGGHH
T ss_pred h----hheeEEEecchhh--hhcccC--Cc---ch---h---hhHHHHHHHhhhhhcc------CC-CeEEEEcChHHHH
Confidence 5 5799999999998 111 01 00 00 0 1245555555554421 12 3799999998887
Q ss_pred Hh---cChHHH-HHHHHhhhcCCceeEEEeeecccc---cc----------hhhHhHHhhhheeEEEeecC
Q 024144 160 RH---ASISSV-AGILSNLRSHDQVSSIFWLLHSDL---HE----------IKFTSVLEYLSSMVASVEPF 213 (272)
Q Consensus 160 ~h---~s~~~v-c~lL~~Lr~~~~vssVl~LLHsDL---He----------~~~v~ALe~LSstvvtv~P~ 213 (272)
-- ....++ -..|..|++... ..|+.+ -.|. |+ ..++-.+-|.|.++++|.|+
T Consensus 163 a~t~~it~~~L~~~~I~~L~k~~~-~lvvt~-saD~pli~~~~~t~~~~e~a~f~~~l~H~A~~visLrpL 231 (280)
T 4a8j_C 163 SLVSGLTCSELNNKFITPLLRQCK-VLIIVS-NSDIFNIDEYDASVHSSNLQNFYKSSFIKSMINLNLNPL 231 (280)
T ss_dssp HHSTTCCHHHHHHHTHHHHHHTCS-EEEEEE-ECGGGCCSSCCHHHHTHHHHHHHHHHHHHCSEEEEEECC
T ss_pred HhccCCCHHHHHHHHHHHHHHhcc-eEEEEe-ccCccccccCCCCchHHHHHHHHHHHHHHhheEEeeccc
Confidence 74 456666 888899987432 233332 3333 31 35778899999999999997
No 4
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.77 E-value=0.3 Score=40.39 Aligned_cols=172 Identities=11% Similarity=0.044 Sum_probs=81.7
Q ss_pred CCCCCceeecccCCCCchhhHHHHHHHHHHHHHHhhccccceeEEEEeecChHHHHHHHhhcCcCccC--CCCeEEEEec
Q 024144 16 GEHAPALTIKDSKASPFGFDVFNYVLTQLSNYILAGKSQSRGLVVVAYSRSPSFYVDLLKRRGIDIAS--SHDWIHILDC 93 (272)
Q Consensus 16 ge~ap~l~i~Dsl~~~~g~~v~~h~~~~l~s~i~a~~~q~~~Vhvl~fe~Spe~y~~~lk~~G~d~~s--~~~ri~i~D~ 93 (272)
|=+++.+++-=--...+=+.+..+++. .+.+..++.|.++.+|-+++.+.+-+.+.|.+.+. ...++.+.|.
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~------~~~~~~~~~v~~~s~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 99 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIY------KGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDG 99 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHH------HHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC-
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHH------HHHHhcCCCceeecccCCHHHHHHHHHHcCCChHHHHhcCcchhhhh
Confidence 444554444333333333444444332 12334577899999999999999988887776443 2346889998
Q ss_pred cCCCCCCcccccCCccccccccccccccchhhhhHHHHHHHHhccCccCCCCCcEEEEEechhHHHHhcC-hHHHHHHHH
Q 024144 94 YTDPLGWKNWLIDKDISQEASSLSSFCQDVRNLDKLYSLIIEQGKGLIGQGKDRFSIAIDSVSEMVRHAS-ISSVAGILS 172 (272)
Q Consensus 94 ysDPLGW~~~~~~~~~~~~~s~~~~~~~~v~~L~sl~~~i~e~~~~~~~~~k~~~tVaIDSLS~LL~h~s-~~~vc~lL~ 172 (272)
++...+-....... ........++.......++. .++ -.|+||+++.+....+ ...+...++
T Consensus 100 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~-------~~~-~~vviD~~~~l~~~~~~~~~~~~~~~ 162 (251)
T 2zts_A 100 VSSVVGLPSEEKFV---------LEDRFNVDNFLRYIYRVVKA-------INA-KRLVIDSIPSIALRLEEERKIREVLL 162 (251)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHH-------TTC-SEEEEECHHHHHHHSSSGGGHHHHHH
T ss_pred HHHHhhcccchhcc---------ccccccHHHHHHHHHHHHHh-------cCC-cEEEEEcHHHHhhhccChHHHHHHHH
Confidence 87765433311100 00000122222221222221 233 4789999999987553 233344444
Q ss_pred hhhcC---CceeEEEeeecc---cccchhhHhHHhhhheeEEEee
Q 024144 173 NLRSH---DQVSSIFWLLHS---DLHEIKFTSVLEYLSSMVASVE 211 (272)
Q Consensus 173 ~Lr~~---~~vssVl~LLHs---DLHe~~~v~ALe~LSstvvtv~ 211 (272)
.|.+. -.+. ++.+-|. +.-.....+.++++|.+++.+.
T Consensus 163 ~L~~~a~~~~i~-vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~ 206 (251)
T 2zts_A 163 KLNTILLEMGVT-TILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HHHHHHHHHCCE-EEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred HHHHHHHHcCCC-eEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence 44431 1111 2222221 1112233456789999988874
No 5
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.84 E-value=0.53 Score=38.94 Aligned_cols=140 Identities=14% Similarity=0.153 Sum_probs=72.6
Q ss_pred cccceeEEEEeecChHHHHHHHhhcCcCccCC--CCeEEEEeccCCCCCCcccccCCcccccccccccc--ccchhhhhH
Q 024144 53 SQSRGLVVVAYSRSPSFYVDLLKRRGIDIASS--HDWIHILDCYTDPLGWKNWLIDKDISQEASSLSSF--CQDVRNLDK 128 (272)
Q Consensus 53 ~q~~~Vhvl~fe~Spe~y~~~lk~~G~d~~s~--~~ri~i~D~ysDPLGW~~~~~~~~~~~~~s~~~~~--~~~v~~L~s 128 (272)
.+++.+.++.+|.++++..+-+++.|++.... ..++.+.|+|.+-++....... +.. +.++.++..
T Consensus 49 ~~~~~v~~~~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~ 118 (247)
T 2dr3_A 49 KMGEPGIYVALEEHPVQVRQNMAQFGWDVKPYEEKGMFAMVDAFTAGIGKSKEYEK----------YIVHDLTDIREFIE 118 (247)
T ss_dssp HTTCCEEEEESSSCHHHHHHHHHTTTCCCHHHHHHTSEEEEECSTTTTCC--CCCS----------CBCSCCSSHHHHHH
T ss_pred hcCCeEEEEEccCCHHHHHHHHHHcCCCHHHHhhCCcEEEEecchhhccccccccc----------ccccCccCHHHHHH
Confidence 35789999999999999988888888875431 2368999987654432110000 000 012222222
Q ss_pred HHHHHHHhccCccCCCCCcEEEEEechhHHHHhcChHHHHHHHHhhhc---CCceeEEEeeecccccchhh-HhHHhhhh
Q 024144 129 LYSLIIEQGKGLIGQGKDRFSIAIDSVSEMVRHASISSVAGILSNLRS---HDQVSSIFWLLHSDLHEIKF-TSVLEYLS 204 (272)
Q Consensus 129 l~~~i~e~~~~~~~~~k~~~tVaIDSLS~LL~h~s~~~vc~lL~~Lr~---~~~vssVl~LLHsDLHe~~~-v~ALe~LS 204 (272)
......+. .++ -.|+||+++.++. ......-+.+..|.+ ... ..|+..-|..-.+... -.++++.+
T Consensus 119 ~i~~~~~~-------~~~-~~vviD~~~~l~~-~~~~~~~~~l~~l~~~~~~~~-~~vi~~~h~~~~~~~~~~~~~~~~~ 188 (247)
T 2dr3_A 119 VLRQAIRD-------INA-KRVVVDSVTTLYI-NKPAMARSIILQLKRVLAGTG-CTSIFVSQVSVGERGFGGPGVEHGV 188 (247)
T ss_dssp HHHHHHHH-------HTC-CEEEEETSGGGTT-TCGGGHHHHHHHHHHHHHHTT-CEEEEEEECC----CCC-CCHHHHS
T ss_pred HHHHHHHH-------hCC-CEEEECCchHhhc-CCHHHHHHHHHHHHHHHHHCC-CeEEEEecCCCCcccccccccceeE
Confidence 22222221 123 3799999998872 222223333333332 122 2455455543221100 00367777
Q ss_pred eeEEEeec
Q 024144 205 SMVASVEP 212 (272)
Q Consensus 205 stvvtv~P 212 (272)
.+++.+..
T Consensus 189 D~vi~L~~ 196 (247)
T 2dr3_A 189 DGIIRLDL 196 (247)
T ss_dssp SEEEEEEE
T ss_pred EEEEEEEE
Confidence 88888864
No 6
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.47 E-value=0.61 Score=41.93 Aligned_cols=92 Identities=15% Similarity=0.174 Sum_probs=48.9
Q ss_pred EEEEEechhHHHHhcC----hHHHHHHHHhhhc---CCceeEEEeeec--ccc----------cchhhHhHHhhhheeEE
Q 024144 148 FSIAIDSVSEMVRHAS----ISSVAGILSNLRS---HDQVSSIFWLLH--SDL----------HEIKFTSVLEYLSSMVA 208 (272)
Q Consensus 148 ~tVaIDSLS~LL~h~s----~~~vc~lL~~Lr~---~~~vssVl~LLH--sDL----------He~~~v~ALe~LSstvv 208 (272)
..|+||+|+.|-...+ ...+...++.|+. .-.+ .|+.+-| .+. ..-+-.+++|++|.+++
T Consensus 183 ~lVVID~l~~l~~~~~~~~r~~~i~~~~~~Lk~lAk~~~i-~vi~lsql~r~~e~r~~~~p~l~dlr~sg~ie~~aD~vi 261 (315)
T 3bh0_A 183 VIVMIDYLQLLEPAKANDSRTNQISQISRDLKKMARELDV-VVIALSQLSRQVEQRQDKRPMLSDLRESGQLEQDADIIE 261 (315)
T ss_dssp EEEEEECGGGSBCSCTTSCHHHHHHHHHHHHHHHHHHHTC-EEEEEECCCGGGTTSSSCCCCGGGGTTTSHHHHHCSEEE
T ss_pred eEEEEeCchhcCCCCCCCCHHHHHHHHHHHHHHHHHHhCC-eEEEEeecCcccccCCCCCCCHHHhhhhhhhHhhCCEEE
Confidence 4899999998753211 1345555555543 1122 2444434 111 11223478999999999
Q ss_pred EeecCCccccccccccchhhhhhccccceEEEEE-EeccCCcEEEE
Q 024144 209 SVEPFNQAAFGQRVDLENLSMLEQNFRKGKFHVR-FKRRNGRVRVM 253 (272)
Q Consensus 209 tv~P~~~~~~~~~~~~~~~~~l~~n~~k~~~~vr-~KrRnGRV~~~ 253 (272)
.+..... +.+. ...++...++ .|.|||..-..
T Consensus 262 ~L~r~~~---~~~~----------~~~~~~~~l~v~K~R~G~~g~~ 294 (315)
T 3bh0_A 262 FLYRDDY---YDKE----------SESKNIVEVIIAKHRDGPVGTV 294 (315)
T ss_dssp EEEEHHH---HCTT----------CTTTTEEEEEEEEETTSCCEEE
T ss_pred EEecccc---cCcc----------ccCCCcEEEEEECCcCCCCceE
Confidence 9975321 1000 0112333443 48999987653
No 7
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.39 E-value=1.1 Score=39.88 Aligned_cols=150 Identities=9% Similarity=0.047 Sum_probs=83.6
Q ss_pred ceeEEEEeecC--hHHHHHHHhhcCcCccCCCCeEEEEeccCCCCCCcccccCCccccccccccccccchhhhhHHHHHH
Q 024144 56 RGLVVVAYSRS--PSFYVDLLKRRGIDIASSHDWIHILDCYTDPLGWKNWLIDKDISQEASSLSSFCQDVRNLDKLYSLI 133 (272)
Q Consensus 56 ~~Vhvl~fe~S--pe~y~~~lk~~G~d~~s~~~ri~i~D~ysDPLGW~~~~~~~~~~~~~s~~~~~~~~v~~L~sl~~~i 133 (272)
..|..+.+|.+ |+...+.+++.|+|.+..-+++.+.+.++ .. ++..++..+
T Consensus 143 ~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~----~~-----------------------~~~~~l~~l 195 (322)
T 2i1q_A 143 PKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLDNTFVARAYN----SD-----------------------MQMLFAEKI 195 (322)
T ss_dssp EEEEEEESSSCCCHHHHHHHHHHHTCCHHHHHHTEEEEECSS----HH-----------------------HHHHHHHTH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHcCCCHHHHhcCEEEEeCCC----HH-----------------------HHHHHHHHH
Confidence 78999999987 88888888888888543223566655321 10 111111122
Q ss_pred HHhccCccCC-CCCcEEEEEechhHHHHhcC-----h----HHHHHHHHhhhcC---CceeEEEeeec--cccc------
Q 024144 134 IEQGKGLIGQ-GKDRFSIAIDSVSEMVRHAS-----I----SSVAGILSNLRSH---DQVSSIFWLLH--SDLH------ 192 (272)
Q Consensus 134 ~e~~~~~~~~-~k~~~tVaIDSLS~LL~h~s-----~----~~vc~lL~~Lr~~---~~vssVl~LLH--sDLH------ 192 (272)
.+..+ + .++ -.|+||||+.+.+..- . ..+.+.++.|++. -.+ .|+..-| .+..
T Consensus 196 ~~~~~----~~~~~-~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~-~vi~~nq~~~~~~~~~g~~ 269 (322)
T 2i1q_A 196 EDLIQ----EGNNI-KLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNC-VVLVTNQVSAKPDAFFGMA 269 (322)
T ss_dssp HHHHH----TTCEE-EEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTC-EEEEEECEECC-------C
T ss_pred HHHHh----hccCc-cEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCC-EEEEECceeecCCCCCCCC
Confidence 22111 1 223 5899999999986411 1 2356666666541 122 2222222 2222
Q ss_pred -chhhHhHHhhhheeEEEeecCCccccccccccchhhhhhccccceEEEEEEeccCCcEEEEEEEEE
Q 024144 193 -EIKFTSVLEYLSSMVASVEPFNQAAFGQRVDLENLSMLEQNFRKGKFHVRFKRRNGRVRVMKYLLS 258 (272)
Q Consensus 193 -e~~~v~ALe~LSstvvtv~P~~~~~~~~~~~~~~~~~l~~n~~k~~~~vr~KrRnGRV~~~~~~~~ 258 (272)
.|.--.++++.+.+++.+..... + -++-...|-|+|......|.|.
T Consensus 270 ~~~~g~~~~~~~~d~~i~l~~~~~-----------------~---~r~~~v~k~~~~p~~~~~f~I~ 316 (322)
T 2i1q_A 270 EQAIGGHIVGHAATFRFFVRKGKG-----------------D---KRVAKLYDSPHLPDAEAIFRIT 316 (322)
T ss_dssp CEESSHHHHHHHCSEEEEEEECST-----------------T---EEEEEEEECSSSCCEEEEEEEE
T ss_pred cCCCCcHHHHhcCcEEEEEEecCC-----------------C---eEEEEEEECCCCCCeEEEEEEe
Confidence 23334589999999999975320 0 0233345778887766677775
No 8
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=93.14 E-value=0.94 Score=40.69 Aligned_cols=153 Identities=13% Similarity=0.037 Sum_probs=74.4
Q ss_pred cceeEEEEeecC--hHHHHHHHhhcCcCccCCCCeEEEEeccCCCCCCcccccCCccccccccccccccchhhhhHHHHH
Q 024144 55 SRGLVVVAYSRS--PSFYVDLLKRRGIDIASSHDWIHILDCYTDPLGWKNWLIDKDISQEASSLSSFCQDVRNLDKLYSL 132 (272)
Q Consensus 55 ~~~Vhvl~fe~S--pe~y~~~lk~~G~d~~s~~~ri~i~D~ysDPLGW~~~~~~~~~~~~~s~~~~~~~~v~~L~sl~~~ 132 (272)
+..+..+.+|.+ |+...+.+++.|++.+..-+++.+.+.++ ..++..++..
T Consensus 141 ~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~---------------------------~~~~~~~l~~ 193 (324)
T 2z43_A 141 SGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAIN---------------------------TDHQIAIVDD 193 (324)
T ss_dssp SCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS---------------------------HHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCCC---------------------------HHHHHHHHHH
Confidence 678999999987 88888888888887543223465555321 0111111122
Q ss_pred HHHhccCccCCCCCcEEEEEechhHHHHhc-----Ch----HHHHHHHHhhhcC----CceeEEEeeeccccc-------
Q 024144 133 IIEQGKGLIGQGKDRFSIAIDSVSEMVRHA-----SI----SSVAGILSNLRSH----DQVSSIFWLLHSDLH------- 192 (272)
Q Consensus 133 i~e~~~~~~~~~k~~~tVaIDSLS~LL~h~-----s~----~~vc~lL~~Lr~~----~~vssVl~LLHsDLH------- 192 (272)
+.+..+ ...++ -.|+|||++.+.+.. .. ..+.+.++.|++. ....=++.-+..+..
T Consensus 194 l~~~~~---~~~~~-~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~~~~~~~~~~~~ 269 (324)
T 2z43_A 194 LQELVS---KDPSI-KLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVMARPDMFYGDPT 269 (324)
T ss_dssp HHHHHH---HCTTE-EEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC------------
T ss_pred HHHHHH---hccCC-CEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcceeecCCCcCCCCC
Confidence 222111 00133 589999999998641 11 2356666666552 111111112222222
Q ss_pred chhhHhHHhhhheeEEEeecCCccccccccccchhhhhhccccceEEEEEEeccCCcEEEEEEEEE
Q 024144 193 EIKFTSVLEYLSSMVASVEPFNQAAFGQRVDLENLSMLEQNFRKGKFHVRFKRRNGRVRVMKYLLS 258 (272)
Q Consensus 193 e~~~v~ALe~LSstvvtv~P~~~~~~~~~~~~~~~~~l~~n~~k~~~~vr~KrRnGRV~~~~~~~~ 258 (272)
.|.--.++++.+.+++.+.... . + + ++--..|-|+|......|.|.
T Consensus 270 ~~~gg~~l~~~~d~~l~l~r~~-------~----------~--~-r~~~v~k~~~~p~~~~~f~I~ 315 (324)
T 2z43_A 270 VAVGGHTLYHVPGIRIQLKKSR-------G----------N--R-RIARVVDAPHLPEGEVVFALT 315 (324)
T ss_dssp ------------CEEEEEEECS-------T----------T--E-EEEEEEECSSSCCEEEEEEEE
T ss_pred CCCchHHHHhhCcEEEEEEEcC-------C----------C--e-EEEEEEECCCCCceEEEEEEe
Confidence 2233347999999999997532 0 1 1 222334778887666677775
No 9
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=92.71 E-value=3.3 Score=33.44 Aligned_cols=138 Identities=12% Similarity=0.074 Sum_probs=73.0
Q ss_pred ccceeEEEEeecChHHHHHHHhhcCcCccCC-CCeEEEEeccCCCCCCcccccCCccccccccccccccchhhhhHHHHH
Q 024144 54 QSRGLVVVAYSRSPSFYVDLLKRRGIDIASS-HDWIHILDCYTDPLGWKNWLIDKDISQEASSLSSFCQDVRNLDKLYSL 132 (272)
Q Consensus 54 q~~~Vhvl~fe~Spe~y~~~lk~~G~d~~s~-~~ri~i~D~ysDPLGW~~~~~~~~~~~~~s~~~~~~~~v~~L~sl~~~ 132 (272)
++..|.++++|.+++.+...++..|++.... ...+.++|.+....+ ...... .. +..++...+..
T Consensus 50 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-----------~~--~~~~~~~~~~~ 115 (235)
T 2w0m_A 50 DGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEKKLIIIDALMKEKE-DQWSLV-----------NL--TPEELVNKVIE 115 (235)
T ss_dssp HTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTTTEEEEECCC-----CTTBCS-----------SC--CHHHHHHHHHH
T ss_pred CCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhCCEEEEeccccccC-ceeeec-----------CC--CHHHHHHHHHH
Confidence 4668999999999998888777778775431 225778887765543 110000 00 23333332233
Q ss_pred HHHhccCccCCCCCcEEEEEechhHHHH--hcChHHHHHHHHhhhcCCceeEEEeeecccccchhhH-hHHhhhheeEEE
Q 024144 133 IIEQGKGLIGQGKDRFSIAIDSVSEMVR--HASISSVAGILSNLRSHDQVSSIFWLLHSDLHEIKFT-SVLEYLSSMVAS 209 (272)
Q Consensus 133 i~e~~~~~~~~~k~~~tVaIDSLS~LL~--h~s~~~vc~lL~~Lr~~~~vssVl~LLHsDLHe~~~v-~ALe~LSstvvt 209 (272)
.....+ ++ ...|+||+++.++. ......+.+.|..+.+...+ .|+..-|..-.+.+.. ..+++++..++.
T Consensus 116 ~~~~~~-----~~-~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~-~vi~~~h~~~~~~~~~~~~~~~~~d~vi~ 188 (235)
T 2w0m_A 116 AKQKLG-----YG-KARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNF-TIYATSQYAITTSQAFGFGVEHVADGIIR 188 (235)
T ss_dssp HHHHHC-----SS-CEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTE-EEEEEEC-----------CHHHHCSEEEE
T ss_pred HHHhhC-----CC-ceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCC-eEEEEeccCcccccccccchheeeeEEEE
Confidence 222211 22 15899999999873 22345566666666432232 4444444321222222 458888988888
Q ss_pred eec
Q 024144 210 VEP 212 (272)
Q Consensus 210 v~P 212 (272)
+.-
T Consensus 189 l~~ 191 (235)
T 2w0m_A 189 FRR 191 (235)
T ss_dssp EEE
T ss_pred EEE
Confidence 865
No 10
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=90.30 E-value=2.1 Score=34.68 Aligned_cols=153 Identities=10% Similarity=0.142 Sum_probs=81.4
Q ss_pred cccceeEEEEeec--ChHHHHHHHhhcCcCccCCCCeEEEEeccCCCCCCcccccCCccccccccccccccchhhhhHHH
Q 024144 53 SQSRGLVVVAYSR--SPSFYVDLLKRRGIDIASSHDWIHILDCYTDPLGWKNWLIDKDISQEASSLSSFCQDVRNLDKLY 130 (272)
Q Consensus 53 ~q~~~Vhvl~fe~--Spe~y~~~lk~~G~d~~s~~~ri~i~D~ysDPLGW~~~~~~~~~~~~~s~~~~~~~~v~~L~sl~ 130 (272)
.++..+.++.+|. +++.+.+.++..|++.+....++.+.+ |.++. ++...+
T Consensus 43 ~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-----------------------~~~~~~ 95 (220)
T 2cvh_A 43 LSGKKVAYVDTEGGFSPERLVQMAETRGLNPEEALSRFILFT----PSDFK-----------------------EQRRVI 95 (220)
T ss_dssp HHCSEEEEEESSCCCCHHHHHHHHHTTTCCHHHHHHHEEEEC----CTTTS-----------------------HHHHHH
T ss_pred HcCCcEEEEECCCCCCHHHHHHHHHhcCCChHHHhhcEEEEe----cCCHH-----------------------HHHHHH
Confidence 4577899999988 888888877766665332122333332 22111 111121
Q ss_pred HHHHHhccCccCCCCCcEEEEEechhHHHHhcCh-----HH---HHHHHHhhhcCCceeEEEeeecc--cc----cchhh
Q 024144 131 SLIIEQGKGLIGQGKDRFSIAIDSVSEMVRHASI-----SS---VAGILSNLRSHDQVSSIFWLLHS--DL----HEIKF 196 (272)
Q Consensus 131 ~~i~e~~~~~~~~~k~~~tVaIDSLS~LL~h~s~-----~~---vc~lL~~Lr~~~~vssVl~LLHs--DL----He~~~ 196 (272)
..+....+ + ++ -.|+||+++.++...+- .. +.+.|.++.+...+ .|+..-|. +. ..|.-
T Consensus 96 ~~~~~l~~----~-~~-~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~-~vi~~~h~~~~~~~~~~~p~~ 168 (220)
T 2cvh_A 96 GSLKKTVD----S-NF-ALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNI-PVIVINQVHFDSRTEMTKPVA 168 (220)
T ss_dssp HHHHHHCC----T-TE-EEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTC-CEEEEECSSSSCTTSSCCSCC
T ss_pred HHHHHHhh----c-CC-CEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCC-EEEEEeeEEEcCCCCccccCC
Confidence 22222211 2 33 58999999998865322 33 44445555432122 24433342 11 11222
Q ss_pred HhHHhhhheeEEEeecCCccccccccccchhhhhhccccceEEEEEEeccCCcEEE-EEEEEE
Q 024144 197 TSVLEYLSSMVASVEPFNQAAFGQRVDLENLSMLEQNFRKGKFHVRFKRRNGRVRV-MKYLLS 258 (272)
Q Consensus 197 v~ALe~LSstvvtv~P~~~~~~~~~~~~~~~~~l~~n~~k~~~~vr~KrRnGRV~~-~~~~~~ 258 (272)
...+++++..++.+..... + .+-++.| .|.|+|.... ..|.|.
T Consensus 169 ~~~~~~~~d~vi~l~~~~~-----------------~-~~r~l~v-~K~r~~~~~~~~~f~I~ 212 (220)
T 2cvh_A 169 EQTLGYRCKDILRLDKLPK-----------------P-GLRVAVL-ERHRFRPEGLMAYFRIT 212 (220)
T ss_dssp CHHHHHTSSEEEEEEECSS-----------------T-TEEEEEE-EECSSSCTTCEEEEEEE
T ss_pred CcceeecCcEEEEEEEecC-----------------C-CEEEEEE-EeCCCCCCCceEEEEEe
Confidence 3478999999999976431 0 1223444 4888887644 456554
No 11
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=88.52 E-value=9.2 Score=36.18 Aligned_cols=26 Identities=8% Similarity=0.009 Sum_probs=19.2
Q ss_pred cceeEEEEeecChHHHHHHH--hhcCcC
Q 024144 55 SRGLVVVAYSRSPSFYVDLL--KRRGID 80 (272)
Q Consensus 55 ~~~Vhvl~fe~Spe~y~~~l--k~~G~d 80 (272)
++.|.++.+|-++++...=+ ...|++
T Consensus 271 g~~vl~~s~E~s~~~l~~r~~~~~~~~~ 298 (503)
T 1q57_A 271 GKKVGLAMLEESVEETAEDLIGLHNRVR 298 (503)
T ss_dssp CCCEEEEESSSCHHHHHHHHHHHHTTSC
T ss_pred CCcEEEEeccCCHHHHHHHHHHHHcCCC
Confidence 78899999999999876632 334554
No 12
>4a8j_A Elongator complex protein 4; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_A
Probab=88.17 E-value=0.96 Score=42.98 Aligned_cols=89 Identities=22% Similarity=0.262 Sum_probs=64.1
Q ss_pred hhhHHHHHHHHhccCccCCCCCcEEEEEechhHHHHhc----ChHHHHHHHHhhhc----CCceeEEEeeecccccchhh
Q 024144 125 NLDKLYSLIIEQGKGLIGQGKDRFSIAIDSVSEMVRHA----SISSVAGILSNLRS----HDQVSSIFWLLHSDLHEIKF 196 (272)
Q Consensus 125 ~L~sl~~~i~e~~~~~~~~~k~~~tVaIDSLS~LL~h~----s~~~vc~lL~~Lr~----~~~vssVl~LLHsDLHe~~~ 196 (272)
.+.+++..+.+..+. + ++.-.=|+|=||-.-+... ....+-++|+.||. +.....++--+..+|-.+..
T Consensus 199 ~y~~lL~~I~~~i~~--~-~~~ilRIvI~SLgSP~wy~~~~~~~~~ll~FL~~LRaLlR~~~~~~v~~iTlP~~l~~~~l 275 (361)
T 4a8j_A 199 PVSTILSQIEQTIKR--N-DKKLIRIVIPSLLHPAMYPPKMFESSEIIGLMHGVRSLVKKYYERVVLFASISIDIITPPL 275 (361)
T ss_dssp CHHHHHHHHHHHHHH--T-TTSEEEEEETTTTCTTTSCGGGGBHHHHHHHHHHHHHHHHHTTTTEEEEEEEECTTSCHHH
T ss_pred hHHHHHHHHHHHHhc--C-CCceEEEEecCCCCcccCCCcccCHHHHHHHHHHHHHHHhhcCCceEEEEEEChHHcChHH
Confidence 344555555544432 1 2333678898887665433 36778999999987 34444567779999999999
Q ss_pred HhHHhhhheeEEEeecCCcc
Q 024144 197 TSVLEYLSSMVASVEPFNQA 216 (272)
Q Consensus 197 v~ALe~LSstvvtv~P~~~~ 216 (272)
+.-+|+|+-+++.|+|....
T Consensus 276 ~~rle~l~D~vi~L~pF~~~ 295 (361)
T 4a8j_A 276 LVLLRNMFDSVINLEPFNQE 295 (361)
T ss_dssp HHHHHHHCSEEEEEEECCHH
T ss_pred HHHHHHhCcEEEEeeecCCc
Confidence 99999999999999998653
No 13
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=86.63 E-value=7.1 Score=37.06 Aligned_cols=20 Identities=0% Similarity=-0.120 Sum_probs=17.1
Q ss_pred ccceeEEEEeecChHHHHHH
Q 024144 54 QSRGLVVVAYSRSPSFYVDL 73 (272)
Q Consensus 54 q~~~Vhvl~fe~Spe~y~~~ 73 (272)
+++.|.++.+|-|+++...=
T Consensus 224 ~g~~vl~fSlEms~~ql~~R 243 (444)
T 3bgw_A 224 NDDVVNLHSLEMGKKENIKR 243 (444)
T ss_dssp TTCEEEEECSSSCTTHHHHH
T ss_pred cCCEEEEEECCCCHHHHHHH
Confidence 47889999999999987764
No 14
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=83.59 E-value=15 Score=33.15 Aligned_cols=39 Identities=13% Similarity=0.192 Sum_probs=28.0
Q ss_pred ccceeEEEEeecC--hHHHHHHHhhcCcCccCCCCeEEEEe
Q 024144 54 QSRGLVVVAYSRS--PSFYVDLLKRRGIDIASSHDWIHILD 92 (272)
Q Consensus 54 q~~~Vhvl~fe~S--pe~y~~~lk~~G~d~~s~~~ri~i~D 92 (272)
++..+..+.+|.+ |+...+.+++.|++.+..-+++.+.+
T Consensus 155 ~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~ 195 (343)
T 1v5w_A 155 PGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYAR 195 (343)
T ss_dssp CCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEee
Confidence 4678999999996 88888888888887542123465554
No 15
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=83.46 E-value=20 Score=33.40 Aligned_cols=30 Identities=10% Similarity=0.138 Sum_probs=21.3
Q ss_pred ccceeEEEEeecChHHHHHHH--hhcCcCccC
Q 024144 54 QSRGLVVVAYSRSPSFYVDLL--KRRGIDIAS 83 (272)
Q Consensus 54 q~~~Vhvl~fe~Spe~y~~~l--k~~G~d~~s 83 (272)
+++.|.++.+|-+++++..-+ ...|++...
T Consensus 228 ~g~~vl~~slE~~~~~l~~R~~~~~~~i~~~~ 259 (444)
T 2q6t_A 228 EGVGVGIYSLEMPAAQLTLRMMCSEARIDMNR 259 (444)
T ss_dssp TCCCEEEEESSSCHHHHHHHHHHHHTTCCTTT
T ss_pred CCCeEEEEECCCCHHHHHHHHHHHHcCCCHHH
Confidence 467899999999999877632 244666433
No 16
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=80.81 E-value=2 Score=48.96 Aligned_cols=120 Identities=12% Similarity=0.164 Sum_probs=70.3
Q ss_pred ccccceeEEEEeecChHHHHHHHhhcCcCccCCCCeEEEEeccCCCCCCcccccCCccccccccccccccchhhhhHHHH
Q 024144 52 KSQSRGLVVVAYSRSPSFYVDLLKRRGIDIASSHDWIHILDCYTDPLGWKNWLIDKDISQEASSLSSFCQDVRNLDKLYS 131 (272)
Q Consensus 52 ~~q~~~Vhvl~fe~Spe~y~~~lk~~G~d~~s~~~ri~i~D~ysDPLGW~~~~~~~~~~~~~s~~~~~~~~v~~L~sl~~ 131 (272)
..+++.+..+.+|.+++..+ ++..|+|.+ ++.+. +|. . ..++..++.
T Consensus 59 ~~~Ge~vlYI~tEes~~~~r--a~~lG~dl~----~i~v~----~p~-----~------------------~e~ll~il~ 105 (2050)
T 3cmu_A 59 QREGKTCAFIDAEHALDPIY--ARKLGVDID----NLLCS----QPD-----T------------------GEQALEICD 105 (2050)
T ss_dssp HTTTCCEEEECTTSCCCHHH--HHHTTCCTT----TCEEE----CCS-----S------------------HHHHHHHHH
T ss_pred hccCCceEEEEccCcchhhH--HhhhccCcc----cceec----CCC-----c------------------HHHHHHHHH
Confidence 34688999999999999887 466788743 34443 341 0 112223333
Q ss_pred HHHHhccCccCCCCCcEEEEEechhHHHHhcCh-------------HHHHHHHHhhhc----CCceeEEE-------eee
Q 024144 132 LIIEQGKGLIGQGKDRFSIAIDSVSEMVRHASI-------------SSVAGILSNLRS----HDQVSSIF-------WLL 187 (272)
Q Consensus 132 ~i~e~~~~~~~~~k~~~tVaIDSLS~LL~h~s~-------------~~vc~lL~~Lr~----~~~vssVl-------~LL 187 (272)
.+.+. +++ -.|+||||+.+.+.... ..+-+++..|.+ +....=+. +..
T Consensus 106 ~L~~~-------~~~-~lVVIDSISaL~~~~e~~~e~~d~~~~~raR~l~~~l~~L~~~ak~~gitVVlTNQv~~~~g~~ 177 (2050)
T 3cmu_A 106 ALARS-------GAV-DVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVM 177 (2050)
T ss_dssp HHHHH-------TCC-SEEEESCGGGCCCHHHHHSCSSSCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTTCC
T ss_pred HHHhc-------cCC-cEEEEcChHHhhhhcccccccccchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEEecccccccc
Confidence 33332 122 48999999999875321 123344444443 32111111 112
Q ss_pred cccccchhhHhHHhhhheeEEEeec
Q 024144 188 HSDLHEIKFTSVLEYLSSMVASVEP 212 (272)
Q Consensus 188 HsDLHe~~~v~ALe~LSstvvtv~P 212 (272)
+++-+.+..-.+++|++.+++.++=
T Consensus 178 fg~~~~~~gG~~l~~iaD~VI~L~r 202 (2050)
T 3cmu_A 178 FGNPETTTGGNALKFYASVRLDIRR 202 (2050)
T ss_dssp SSCCEECSSHHHHHHHEEEEEEEEE
T ss_pred cCcccccCCcchhhhhCcEEEEEEe
Confidence 3455667778899999999999964
No 17
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=77.56 E-value=37 Score=31.70 Aligned_cols=91 Identities=21% Similarity=0.205 Sum_probs=48.4
Q ss_pred EEEEEechhHHHHhc-----ChHHH---HHHHHhhhcCCceeEEEeeec--c------c----ccchhhHhHHhhhheeE
Q 024144 148 FSIAIDSVSEMVRHA-----SISSV---AGILSNLRSHDQVSSIFWLLH--S------D----LHEIKFTSVLEYLSSMV 207 (272)
Q Consensus 148 ~tVaIDSLS~LL~h~-----s~~~v---c~lL~~Lr~~~~vssVl~LLH--s------D----LHe~~~v~ALe~LSstv 207 (272)
-.|+||++..+.... ....+ .+.|.+|-+.-.+ .|+.+-| . | +..-+-.+++++.|.++
T Consensus 315 ~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i-~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~v 393 (454)
T 2r6a_A 315 GMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEV-PVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIV 393 (454)
T ss_dssp CEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTC-CEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEE
T ss_pred CEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCC-eEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEE
Confidence 489999999987421 23344 4445544332122 3555556 1 1 11122235899999999
Q ss_pred EEeecCCccccccccccchhhhhhccccceEEEE-EEeccCCcEEE
Q 024144 208 ASVEPFNQAAFGQRVDLENLSMLEQNFRKGKFHV-RFKRRNGRVRV 252 (272)
Q Consensus 208 vtv~P~~~~~~~~~~~~~~~~~l~~n~~k~~~~v-r~KrRnGRV~~ 252 (272)
+.+.....- .+ + +..++...+ ..|.|||.+-.
T Consensus 394 i~l~r~~~~---~~---~-------~~~~~~~~l~i~K~R~G~~g~ 426 (454)
T 2r6a_A 394 AFLYRDDYY---NK---D-------SENKNIIEIIIAKQRNGPVGT 426 (454)
T ss_dssp EEEEETTC--------------------CCEEEEEEEEESSSCCEE
T ss_pred EEEeccccc---Cc---c-------cCCCCeEEEEEecccCCCCeE
Confidence 999764321 10 0 001233333 35889998754
No 18
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=76.59 E-value=6.1 Score=36.76 Aligned_cols=120 Identities=12% Similarity=0.156 Sum_probs=63.7
Q ss_pred ccceeEEEEeecChHHHHHHHhhcCcCccCCCCeEEEEeccCCCCCCcccccCCccccccccccccccchhhhhHHHHHH
Q 024144 54 QSRGLVVVAYSRSPSFYVDLLKRRGIDIASSHDWIHILDCYTDPLGWKNWLIDKDISQEASSLSSFCQDVRNLDKLYSLI 133 (272)
Q Consensus 54 q~~~Vhvl~fe~Spe~y~~~lk~~G~d~~s~~~ri~i~D~ysDPLGW~~~~~~~~~~~~~s~~~~~~~~v~~L~sl~~~i 133 (272)
++..|.++.+|-+++... +++.|+|. .++.+.| |.. ..++...+...
T Consensus 101 ~g~~vlyi~~E~s~~~~~--a~~~g~d~----~~l~i~~----~~~-----------------------~e~~l~~l~~l 147 (366)
T 1xp8_A 101 AGGTCAFIDAEHALDPVY--ARALGVNT----DELLVSQ----PDN-----------------------GEQALEIMELL 147 (366)
T ss_dssp TTCCEEEEESSCCCCHHH--HHHTTCCG----GGCEEEC----CSS-----------------------HHHHHHHHHHH
T ss_pred CCCeEEEEECCCChhHHH--HHHcCCCH----HHceeec----CCc-----------------------HHHHHHHHHHH
Confidence 567899999999887653 46678773 3455443 321 11222221222
Q ss_pred HHhccCccCCCCCcEEEEEechhHHHHhcC-----------h--HHHHHHHHhhhc----CCceeEEEeeec-------c
Q 024144 134 IEQGKGLIGQGKDRFSIAIDSVSEMVRHAS-----------I--SSVAGILSNLRS----HDQVSSIFWLLH-------S 189 (272)
Q Consensus 134 ~e~~~~~~~~~k~~~tVaIDSLS~LL~h~s-----------~--~~vc~lL~~Lr~----~~~vssVl~LLH-------s 189 (272)
.. +.++ -.|+||||+.+..+.. . ..+.+.|+.|.. .....=++.-+. +
T Consensus 148 ~~-------~~~~-~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq~~~~~~~~fg 219 (366)
T 1xp8_A 148 VR-------SGAI-DVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVREKIGVMYG 219 (366)
T ss_dssp HT-------TTCC-SEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC---------
T ss_pred Hh-------cCCC-CEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEecccccCcccC
Confidence 21 1233 4899999999873211 1 235677777742 222221112222 2
Q ss_pred cccchhhHhHHhhhheeEEEeecCC
Q 024144 190 DLHEIKFTSVLEYLSSMVASVEPFN 214 (272)
Q Consensus 190 DLHe~~~v~ALe~LSstvvtv~P~~ 214 (272)
|-..+.--.++++.|++++.+.-..
T Consensus 220 ~p~~~~gg~al~~~a~~rl~L~r~~ 244 (366)
T 1xp8_A 220 NPETTTGGRALKFYASVRLDVRKIG 244 (366)
T ss_dssp ------CHHHHHHHCSEEEEEEEES
T ss_pred CccccCCcchhhheeeEEEEEEecc
Confidence 2122333568999999999997543
No 19
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=73.05 E-value=36 Score=27.64 Aligned_cols=28 Identities=11% Similarity=0.151 Sum_probs=21.4
Q ss_pred ccceeEEEEeec--ChHHHHHHHhhcCcCc
Q 024144 54 QSRGLVVVAYSR--SPSFYVDLLKRRGIDI 81 (272)
Q Consensus 54 q~~~Vhvl~fe~--Spe~y~~~lk~~G~d~ 81 (272)
+..++..+..+. +++...+.+++.|+++
T Consensus 57 ~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~ 86 (243)
T 1n0w_A 57 GEGKAMYIDTEGTFRPERLLAVAERYGLSG 86 (243)
T ss_dssp CSSEEEEEESSSCCCHHHHHHHHHHTTCCH
T ss_pred CCCeEEEEECCCCcCHHHHHHHHHHcCCCH
Confidence 367888888888 4777777778888775
No 20
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=64.56 E-value=79 Score=29.62 Aligned_cols=90 Identities=10% Similarity=0.001 Sum_probs=50.9
Q ss_pred EEEEEechhHHHHhcCh------------HHHHHHHHhhhcCCceeEEEeeecc--cc----------cchhhHhHHhhh
Q 024144 148 FSIAIDSVSEMVRHASI------------SSVAGILSNLRSHDQVSSIFWLLHS--DL----------HEIKFTSVLEYL 203 (272)
Q Consensus 148 ~tVaIDSLS~LL~h~s~------------~~vc~lL~~Lr~~~~vssVl~LLHs--DL----------He~~~v~ALe~L 203 (272)
-.|+||+++.++...-- ..+.+.|..|.+... ..|+..-|- .. ..|---..++|+
T Consensus 275 ~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~g-itVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ 353 (400)
T 3lda_A 275 SLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFG-VAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYS 353 (400)
T ss_dssp EEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHC-CEEEEEEEC--------------------CHHHHH
T ss_pred ceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcC-CEEEEEEeecccCCccccccCCCccCCchhHHHHh
Confidence 57889999998764211 334555555543212 344444453 11 112223678999
Q ss_pred heeEEEeecCCccccccccccchhhhhhccccceEEEEEEeccCCcEEEEEEEEE
Q 024144 204 SSMVASVEPFNQAAFGQRVDLENLSMLEQNFRKGKFHVRFKRRNGRVRVMKYLLS 258 (272)
Q Consensus 204 Sstvvtv~P~~~~~~~~~~~~~~~~~l~~n~~k~~~~vr~KrRnGRV~~~~~~~~ 258 (272)
+.+++.+.-... .-++-...|.|+|.-....|.|.
T Consensus 354 ad~vl~L~~~~g--------------------~~R~l~v~K~R~~p~~e~~F~It 388 (400)
T 3lda_A 354 STTRLGFKKGKG--------------------CQRLCKVVDSPCLPEAECVFAIY 388 (400)
T ss_dssp CSEEEEEEECST--------------------TEEEEEEEECSSSCSCEEEEEEE
T ss_pred cceEEEEEecCC--------------------CcEEEEEEcCCCCCCCceEEEEe
Confidence 999999976321 01455567889888777667664
No 21
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=58.48 E-value=10 Score=42.60 Aligned_cols=119 Identities=13% Similarity=0.172 Sum_probs=68.0
Q ss_pred cccceeEEEEeecChHHHHHHHhhcCcCccCCCCeEEEEeccCCCCCCcccccCCccccccccccccccchhhhhHHHHH
Q 024144 53 SQSRGLVVVAYSRSPSFYVDLLKRRGIDIASSHDWIHILDCYTDPLGWKNWLIDKDISQEASSLSSFCQDVRNLDKLYSL 132 (272)
Q Consensus 53 ~q~~~Vhvl~fe~Spe~y~~~lk~~G~d~~s~~~ri~i~D~ysDPLGW~~~~~~~~~~~~~s~~~~~~~~v~~L~sl~~~ 132 (272)
.+++.+..+.++.++++.+ +++.|+|. +++++. +|. ...++..++..
T Consensus 60 ~~G~~vlYI~te~~~~~l~--~~~lg~dl----~~i~i~----~p~-----------------------t~e~l~~ll~~ 106 (1706)
T 3cmw_A 60 REGKTCAFIDAEHALDPIY--ARKLGVDI----DNLLCS----QPD-----------------------TGEQALEICDA 106 (1706)
T ss_dssp HTTCCEEEECTTSCCCHHH--HHHTTCCG----GGCEEE----CCS-----------------------SHHHHHHHHHH
T ss_pred hCCCceEEEEecCccHHHH--HHhhccCc----cceeee----ccC-----------------------cHHHHHHHHHH
Confidence 4578999999999988877 46667773 345443 231 11233333333
Q ss_pred HHHhccCccCCCCCcEEEEEechhHHHHhcChH-------------HHHHHHHhhhc----CCceeEEEeee-------c
Q 024144 133 IIEQGKGLIGQGKDRFSIAIDSVSEMVRHASIS-------------SVAGILSNLRS----HDQVSSIFWLL-------H 188 (272)
Q Consensus 133 i~e~~~~~~~~~k~~~tVaIDSLS~LL~h~s~~-------------~vc~lL~~Lr~----~~~vssVl~LL-------H 188 (272)
+.+. +++ -.|+||||+.+.+..... .+.+++..|.+ +....=+...+ -
T Consensus 107 L~~~-------~~~-~LVVIDSLt~L~~~~e~e~~~~~~~~~~~~r~~~~ll~~L~~~ake~~~tVIvTNqv~s~~g~~f 178 (1706)
T 3cmw_A 107 LARS-------GAV-DVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMF 178 (1706)
T ss_dssp HHHH-------TCC-SEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCS
T ss_pred HHhc-------cCC-CEEEEcchhhhccccccccccccchhHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeccccccccc
Confidence 3332 122 489999999988764211 23444444443 22221111111 1
Q ss_pred ccccchhhHhHHhhhheeEEEeec
Q 024144 189 SDLHEIKFTSVLEYLSSMVASVEP 212 (272)
Q Consensus 189 sDLHe~~~v~ALe~LSstvvtv~P 212 (272)
+|-+.+..-..++|++.+++.++=
T Consensus 179 gd~~~a~~g~~l~h~ad~~I~L~r 202 (1706)
T 3cmw_A 179 GNPETTTGGNALKFYASVRLDIRR 202 (1706)
T ss_dssp SCCEEESSCSHHHHHEEEEEEEEE
T ss_pred CccccccCcchhhhhCCEEEEEEe
Confidence 233445556799999999999953
No 22
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=57.10 E-value=25 Score=32.36 Aligned_cols=27 Identities=11% Similarity=0.220 Sum_probs=18.5
Q ss_pred cccceeEEEEeecChHHHHHHHhhcCcCc
Q 024144 53 SQSRGLVVVAYSRSPSFYVDLLKRRGIDI 81 (272)
Q Consensus 53 ~q~~~Vhvl~fe~Spe~y~~~lk~~G~d~ 81 (272)
.++..|.++.+|-+++... .++.|++.
T Consensus 89 ~~g~~vlyid~E~s~~~~~--a~~~g~~~ 115 (356)
T 1u94_A 89 REGKTCAFIDAEHALDPIY--ARKLGVDI 115 (356)
T ss_dssp HTTCCEEEEESSCCCCHHH--HHHTTCCG
T ss_pred HCCCeEEEEeCCCCccHHH--HHHcCCCh
Confidence 3567899999988776443 45667763
No 23
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=52.87 E-value=16 Score=40.94 Aligned_cols=134 Identities=11% Similarity=0.132 Sum_probs=73.9
Q ss_pred CchhhHHHHHHHHHHHHHHhhccccceeEEEEeecChHHHHHHHhhcCcCccCCCCeEEEEeccCCCCCCcccccCCccc
Q 024144 31 PFGFDVFNYVLTQLSNYILAGKSQSRGLVVVAYSRSPSFYVDLLKRRGIDIASSHDWIHILDCYTDPLGWKNWLIDKDIS 110 (272)
Q Consensus 31 ~~g~~v~~h~~~~l~s~i~a~~~q~~~Vhvl~fe~Spe~y~~~lk~~G~d~~s~~~ri~i~D~ysDPLGW~~~~~~~~~~ 110 (272)
.+=+.+..|++.. ...+++.+.++.+|-+++... .++.|+|. +++.+.| |-.
T Consensus 394 sGKTtLaLq~a~~-------~~~~G~~vlyis~E~s~~~~~--a~~lGvd~----~~L~i~~----~~~----------- 445 (1706)
T 3cmw_A 394 SGKTTLTLQVIAA-------AQREGKTCAFIDAEHALDPIY--ARKLGVDI----DNLLCSQ----PDT----------- 445 (1706)
T ss_dssp SSHHHHHHHHHHH-------HHHTTCCEEEECTTSCCCHHH--HHHTTCCG----GGCEEEC----CSS-----------
T ss_pred CCHHHHHHHHHHH-------HHHhCCCeEEEEccCchHHHH--HHHcCCCH----HHeEEcC----CCC-----------
Confidence 3445555554432 233678999999999998864 57778874 3455533 211
Q ss_pred cccccccccccchhhhhHHHHHHHHhccCccCCCCCcEEEEEechhHHHHhc------C-------hHHHHHHHHhhhc-
Q 024144 111 QEASSLSSFCQDVRNLDKLYSLIIEQGKGLIGQGKDRFSIAIDSVSEMVRHA------S-------ISSVAGILSNLRS- 176 (272)
Q Consensus 111 ~~~s~~~~~~~~v~~L~sl~~~i~e~~~~~~~~~k~~~tVaIDSLS~LL~h~------s-------~~~vc~lL~~Lr~- 176 (272)
..++........+. .++ -.|+||||+.|.... + ...+.+.|+.|..
T Consensus 446 ------------~e~~l~~l~~lv~~-------~~~-~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ 505 (1706)
T 3cmw_A 446 ------------GEQALEICDALARS-------GAV-DVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGN 505 (1706)
T ss_dssp ------------HHHHHHHHHHHHHH-------TCC-SEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHHh-------cCC-CEEEECCHHHhhccccccccccccchhHHHHHHHHHHHHHHHH
Confidence 11222221222221 233 489999999987321 1 1235677777743
Q ss_pred ---CCceeEEEeeecccc-------cchhhHhHHhhhheeEEEeec
Q 024144 177 ---HDQVSSIFWLLHSDL-------HEIKFTSVLEYLSSMVASVEP 212 (272)
Q Consensus 177 ---~~~vssVl~LLHsDL-------He~~~v~ALe~LSstvvtv~P 212 (272)
.....=++.-++.+. ..|.--++|++.|.+++.|.-
T Consensus 506 ak~~~v~VI~inQl~~~vg~~fg~~~~p~gg~ale~~ADv~L~L~R 551 (1706)
T 3cmw_A 506 LKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRR 551 (1706)
T ss_dssp HHHHTCEEEEEECEEECTTCCSSCCEEESSCSHHHHHEEEEEEEEE
T ss_pred HHHcCCEEEEEeecccccccccCCCccCCCCcceeeeCCEEEEEEe
Confidence 222222222233221 222224799999999999854
No 24
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=51.83 E-value=94 Score=25.15 Aligned_cols=137 Identities=12% Similarity=0.019 Sum_probs=69.1
Q ss_pred cccceeEEEEeecChHHHHHHHhhcCcCccC--CCCeEEEEeccCCCCCCcccccCCccccccccccccc--cchhhhhH
Q 024144 53 SQSRGLVVVAYSRSPSFYVDLLKRRGIDIAS--SHDWIHILDCYTDPLGWKNWLIDKDISQEASSLSSFC--QDVRNLDK 128 (272)
Q Consensus 53 ~q~~~Vhvl~fe~Spe~y~~~lk~~G~d~~s--~~~ri~i~D~ysDPLGW~~~~~~~~~~~~~s~~~~~~--~~v~~L~s 128 (272)
.++.++.++..+.+++...+..++.|++... ...++.+.|.+..+.+-..... +... .+..++..
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~ 125 (251)
T 2ehv_A 57 EYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVGLPSEEK-----------FVLEDRFNVDNFLR 125 (251)
T ss_dssp HHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC------------------------------CCHHHHHH
T ss_pred hCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEccccccccccccc-----------eeccCcccHHHHHH
Confidence 4567888999999999888888888877543 1346888888776543211000 0000 01222221
Q ss_pred HHHHHHHhccCccCCCCCcEEEEEechhHHHHh-----cChHHHHHHHHhhhcCCceeEEEeeecccccch---hhHhHH
Q 024144 129 LYSLIIEQGKGLIGQGKDRFSIAIDSVSEMVRH-----ASISSVAGILSNLRSHDQVSSIFWLLHSDLHEI---KFTSVL 200 (272)
Q Consensus 129 l~~~i~e~~~~~~~~~k~~~tVaIDSLS~LL~h-----~s~~~vc~lL~~Lr~~~~vssVl~LLHsDLHe~---~~v~AL 200 (272)
.+...... .+| -.|++|..+.++.. ..-..+..++..+++.+ ..|+..-| ++.+. .....+
T Consensus 126 ~~~~~l~~-------~~p-~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g--~tii~vtH-~~~~~~~~~~~~~i 194 (251)
T 2ehv_A 126 YIYRVVKA-------INA-KRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMG--VTTILTTE-APDPQHGKLSRYGI 194 (251)
T ss_dssp HHHHHHHH-------TTC-SEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHC--CEEEEEEC-CC----CCSSSSSC
T ss_pred HHHHHHHh-------hCC-CEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCC--CeEEEEEC-CCCCCcccccccCh
Confidence 11111111 233 47999999999973 22234677777776532 23444444 33332 111234
Q ss_pred hhhh-eeEEEee
Q 024144 201 EYLS-SMVASVE 211 (272)
Q Consensus 201 e~LS-stvvtv~ 211 (272)
++++ ..++.+.
T Consensus 195 ~~~~aD~vi~l~ 206 (251)
T 2ehv_A 195 EEFIARGVIVLD 206 (251)
T ss_dssp GGGGCSEEEEEE
T ss_pred hhEeeeEEEEEe
Confidence 6777 7777774
No 25
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=50.05 E-value=36 Score=31.13 Aligned_cols=116 Identities=15% Similarity=0.189 Sum_probs=61.3
Q ss_pred ccceeEEEEeecChHHHHHHHhhcCcCccCCCCeEEEEeccCCCCCCcccccCCccccccccccccccchhhhhHHHHHH
Q 024144 54 QSRGLVVVAYSRSPSFYVDLLKRRGIDIASSHDWIHILDCYTDPLGWKNWLIDKDISQEASSLSSFCQDVRNLDKLYSLI 133 (272)
Q Consensus 54 q~~~Vhvl~fe~Spe~y~~~lk~~G~d~~s~~~ri~i~D~ysDPLGW~~~~~~~~~~~~~s~~~~~~~~v~~L~sl~~~i 133 (272)
++..+.++..|-+.+... .++.|++. +++.+.+ |.. +.++..+....
T Consensus 88 ~g~~vlyi~~E~~~~~~~--a~~lG~~~----~~l~i~~----~~~-----------------------~e~~l~~~~~l 134 (349)
T 2zr9_A 88 AGGIAAFIDAEHALDPEY--AKKLGVDT----DSLLVSQ----PDT-----------------------GEQALEIADML 134 (349)
T ss_dssp TTCCEEEEESSCCCCHHH--HHHTTCCG----GGCEEEC----CSS-----------------------HHHHHHHHHHH
T ss_pred CCCeEEEEECCCCcCHHH--HHHcCCCH----HHeEEec----CCC-----------------------HHHHHHHHHHH
Confidence 467888999988776543 45667773 3344432 321 11222221222
Q ss_pred HHhccCccCCCCCcEEEEEechhHHHHhc-------C----hH--HHHHHHHhhhc----CCceeEEEeeec--ccc---
Q 024144 134 IEQGKGLIGQGKDRFSIAIDSVSEMVRHA-------S----IS--SVAGILSNLRS----HDQVSSIFWLLH--SDL--- 191 (272)
Q Consensus 134 ~e~~~~~~~~~k~~~tVaIDSLS~LL~h~-------s----~~--~vc~lL~~Lr~----~~~vssVl~LLH--sDL--- 191 (272)
.. +.++ -.|+|||++.++.+. . .. .+.+.|+.|.. ... .|+..-| .+.
T Consensus 135 ~~-------~~~~-~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~--tVI~inh~~~~~~~~ 204 (349)
T 2zr9_A 135 VR-------SGAL-DIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGT--TAIFINELREKIGVM 204 (349)
T ss_dssp HT-------TTCC-SEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTC--EEEEEEECC------
T ss_pred Hh-------cCCC-CEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCC--EEEEEeccccccCcc
Confidence 22 1233 489999999987311 0 22 45677777742 222 2333333 111
Q ss_pred c----chhhHhHHhhhheeEEEeec
Q 024144 192 H----EIKFTSVLEYLSSMVASVEP 212 (272)
Q Consensus 192 H----e~~~v~ALe~LSstvvtv~P 212 (272)
+ .+.--.+|++.+++++.+.-
T Consensus 205 ~~~p~~~~gg~~l~~~ad~~l~lrr 229 (349)
T 2zr9_A 205 FGSPETTTGGKALKFYASVRLDVRR 229 (349)
T ss_dssp -----CCSSHHHHHHHCSEEEEEEE
T ss_pred cCCCcccCCchHhhhccceEEEEEE
Confidence 1 11224589999999988754
No 26
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=43.54 E-value=1.2e+02 Score=34.98 Aligned_cols=119 Identities=12% Similarity=0.159 Sum_probs=67.9
Q ss_pred cccceeEEEEeecChHHHHHHHhhcCcCccCCCCeEEEEeccCCCCCCcccccCCccccccccccccccchhhhhHHHHH
Q 024144 53 SQSRGLVVVAYSRSPSFYVDLLKRRGIDIASSHDWIHILDCYTDPLGWKNWLIDKDISQEASSLSSFCQDVRNLDKLYSL 132 (272)
Q Consensus 53 ~q~~~Vhvl~fe~Spe~y~~~lk~~G~d~~s~~~ri~i~D~ysDPLGW~~~~~~~~~~~~~s~~~~~~~~v~~L~sl~~~ 132 (272)
.++..|.++.+|-+++... .++.|+|. +++.|.| |..+ .++......
T Consensus 409 ~~G~~vlyis~E~s~~~~~--a~~lGvd~----~~L~I~~----~~~~-----------------------e~il~~~~~ 455 (2050)
T 3cmu_A 409 REGKTCAFIDAEHALDPIY--ARKLGVDI----DNLLCSQ----PDTG-----------------------EQALEICDA 455 (2050)
T ss_dssp TTTCCEEEECTTSCCCHHH--HHHTTCCT----TTCEEEC----CSSH-----------------------HHHHHHHHH
T ss_pred hcCCeEEEEEcCCCHHHHH--HHHcCCCH----HHeEEeC----CCCH-----------------------HHHHHHHHH
Confidence 3567899999999998765 67778883 4465544 3211 122222122
Q ss_pred HHHhccCccCCCCCcEEEEEechhHHHHhc------C-------hHHHHHHHHhhh----cCCceeEEEeeecccc----
Q 024144 133 IIEQGKGLIGQGKDRFSIAIDSVSEMVRHA------S-------ISSVAGILSNLR----SHDQVSSIFWLLHSDL---- 191 (272)
Q Consensus 133 i~e~~~~~~~~~k~~~tVaIDSLS~LL~h~------s-------~~~vc~lL~~Lr----~~~~vssVl~LLHsDL---- 191 (272)
.... .++ -.|+||||..|..+. + ...+.+.|+.|. ......=++.-++.+.
T Consensus 456 lv~~-------~~~-~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~~~vg~~~ 527 (2050)
T 3cmu_A 456 LARS-------GAV-DVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMF 527 (2050)
T ss_dssp HHHH-------TCC-SEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTTCCS
T ss_pred HHHh-------cCC-cEEEECCHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeeccccccccc
Confidence 2221 233 489999999887311 1 124677788874 3332222223343332
Q ss_pred ---cchhhHhHHhhhheeEEEeec
Q 024144 192 ---HEIKFTSVLEYLSSMVASVEP 212 (272)
Q Consensus 192 ---He~~~v~ALe~LSstvvtv~P 212 (272)
..|.--+++++.|.+++.+.-
T Consensus 528 g~p~~psGg~ale~~ADv~l~L~R 551 (2050)
T 3cmu_A 528 GNPETTTGGNALKFYASVRLDIRR 551 (2050)
T ss_dssp SCCEECSSHHHHHHHEEEEEEEEE
T ss_pred CCCcCCCCcchhhhhCCEEEEEEe
Confidence 222234589999999998864
No 27
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=29.68 E-value=2.7e+02 Score=25.61 Aligned_cols=65 Identities=15% Similarity=0.148 Sum_probs=35.6
Q ss_pred EEEEEechhHHHHh--cC-----------hHHHHHHHHhhhc---C-CceeEEEeeec-------ccccchhhHhHHhhh
Q 024144 148 FSIAIDSVSEMVRH--AS-----------ISSVAGILSNLRS---H-DQVSSIFWLLH-------SDLHEIKFTSVLEYL 203 (272)
Q Consensus 148 ~tVaIDSLS~LL~h--~s-----------~~~vc~lL~~Lr~---~-~~vssVl~LLH-------sDLHe~~~v~ALe~L 203 (272)
-.|+|||+..+... .. ...+++.|+.|+. . ....=++.-+. +|--.+---.+|+|+
T Consensus 141 dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~inqv~~k~g~~fg~p~~~~GG~~l~h~ 220 (356)
T 3hr8_A 141 DLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTNQIRMKIGVMFGSPETTTGGLALKFY 220 (356)
T ss_dssp SEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEEESSSCSSSSSCSCSSCTHHHHHHHH
T ss_pred CeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeeeeccccccCCcccCCCcchhhhh
Confidence 47899999887631 11 1234555554443 2 22222222232 121123335789999
Q ss_pred heeEEEeec
Q 024144 204 SSMVASVEP 212 (272)
Q Consensus 204 Sstvvtv~P 212 (272)
+++++.++-
T Consensus 221 ~~~rl~l~k 229 (356)
T 3hr8_A 221 ATMRMEVRR 229 (356)
T ss_dssp CSEEEEEEE
T ss_pred CcEEEEEEe
Confidence 999999975
No 28
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=25.08 E-value=1.3e+02 Score=25.73 Aligned_cols=66 Identities=17% Similarity=0.193 Sum_probs=33.4
Q ss_pred EEEEEechhHHHHh-------cChHHHHHHHHhhhcCCceeEEEeeeccc-ccc--------------hhhHhHHhhhhe
Q 024144 148 FSIAIDSVSEMVRH-------ASISSVAGILSNLRSHDQVSSIFWLLHSD-LHE--------------IKFTSVLEYLSS 205 (272)
Q Consensus 148 ~tVaIDSLS~LL~h-------~s~~~vc~lL~~Lr~~~~vssVl~LLHsD-LHe--------------~~~v~ALe~LSs 205 (272)
-.|+||.++.++.. .....+.+.|..|.+... ..|+..-|-- +.+ -+-.+.++++|.
T Consensus 149 ~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~-~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD 227 (296)
T 1cr0_A 149 DVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTG-VVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSD 227 (296)
T ss_dssp SEEEEEEEC-----------CHHHHHHHHHHHHHHHHHC-CEEEEEEECC-----------------CCC---CHHHHCS
T ss_pred CEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhC-CeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCc
Confidence 48999999997743 122345566666643212 2344444441 121 112237899999
Q ss_pred eEEEeecCC
Q 024144 206 MVASVEPFN 214 (272)
Q Consensus 206 tvvtv~P~~ 214 (272)
.++.+....
T Consensus 228 ~vi~L~~~~ 236 (296)
T 1cr0_A 228 TIIALERNQ 236 (296)
T ss_dssp EEEEEEEC-
T ss_pred EEEEEecCc
Confidence 999997654
No 29
>4dm9_A Ubiquitin carboxyl-terminal hydrolase isozyme L1; ubiquitin hydrolase, ligase, hydrolase, ligase-inhibitor COM; HET: PHQ GME; 2.35A {Homo sapiens} PDB: 3kw5_A 2etl_A* 3irt_A 3kvf_A 3ifw_A 2len_A
Probab=23.38 E-value=57 Score=28.76 Aligned_cols=32 Identities=16% Similarity=0.271 Sum_probs=26.8
Q ss_pred EEeecChHHHHHHHhhcCcCccCCCCeEEEEeccC-CC
Q 024144 61 VAYSRSPSFYVDLLKRRGIDIASSHDWIHILDCYT-DP 97 (272)
Q Consensus 61 l~fe~Spe~y~~~lk~~G~d~~s~~~ri~i~D~ys-DP 97 (272)
+-+|..|+.|.+++++-|+. . .+.++|.|+ ||
T Consensus 9 ~pLESnP~Vft~l~~~LGv~----~-~~~f~DVysLD~ 41 (228)
T 4dm9_A 9 KPMEINPEMLNKVLSRLGVA----G-QWRFVDVLGLEE 41 (228)
T ss_dssp CCCCCSHHHHHHHHHHTTBC----S-SEEEEEECCSSH
T ss_pred eeccCCHHHHHHHHHHcCCC----C-ceEEEEeecCCH
Confidence 34689999999999999987 2 479999998 54
No 30
>1xd3_A Ubiquitin carboxyl-terminal esterase L3; enzyme-ligand complex, active site crossover loop, hydrolase; HET: GVE; 1.45A {Homo sapiens} SCOP: d.3.1.6 PDB: 1uch_A*
Probab=22.59 E-value=68 Score=28.29 Aligned_cols=32 Identities=25% Similarity=0.488 Sum_probs=27.0
Q ss_pred EEeecChHHHHHHHhhcCcCccCCCCeEEEEeccC-CC
Q 024144 61 VAYSRSPSFYVDLLKRRGIDIASSHDWIHILDCYT-DP 97 (272)
Q Consensus 61 l~fe~Spe~y~~~lk~~G~d~~s~~~ri~i~D~ys-DP 97 (272)
+-+|..|+.|.+++++-|+. . .+.++|.|+ ||
T Consensus 7 ~plESnP~Vft~l~~~lGv~----~-~~~f~DVysld~ 39 (230)
T 1xd3_A 7 LPLEANPEVTNQFLKQLGLH----P-NWQFVDVYGMDP 39 (230)
T ss_dssp CCCBCCHHHHHHHHHHTTBC----T-TEEEEECCCSSH
T ss_pred ccccCCHHHHHHHHHHcCCC----c-eEEEEEeccCCH
Confidence 45799999999999999997 3 289999998 44
No 31
>2wdt_A Ubiquitin carboxyl-terminal hydrolase L3; hydrolase-protein binding complex, enzyme-ligand complex, UB isopeptidase, UCH-L superfamily, cystein proteinase, peptid hydrolase; 2.30A {Plasmodium falciparum} PDB: 2we6_A
Probab=22.41 E-value=63 Score=28.56 Aligned_cols=31 Identities=13% Similarity=0.223 Sum_probs=26.8
Q ss_pred EEeecChHHHHHHHhhcCcCccCCCCeEEEEeccC-CC
Q 024144 61 VAYSRSPSFYVDLLKRRGIDIASSHDWIHILDCYT-DP 97 (272)
Q Consensus 61 l~fe~Spe~y~~~lk~~G~d~~s~~~ri~i~D~ys-DP 97 (272)
+-.|..|+.|.+++++-|+. . +.++|.|+ ||
T Consensus 8 ~plESnP~Vft~l~~~lGv~----~--~~f~DVysld~ 39 (232)
T 2wdt_A 8 TPLESNPDSLYLYSCKLGQS----K--LKFVDIYGFNN 39 (232)
T ss_dssp CCCBCCHHHHHHHHHHHTCC----S--EEEEECCCSSH
T ss_pred eeecCCHHHHHHHHHHhCCC----C--eEEEEcccCCH
Confidence 44789999999999999988 4 89999999 54
No 32
>1cmx_A Protein (ubiquitin YUH1-UBAL); ubiquitin hydrolase, deubiquitinating enzyme, cysteine protease, enzyme specificity; 2.25A {Synthetic} SCOP: d.3.1.6
Probab=21.82 E-value=66 Score=28.58 Aligned_cols=31 Identities=19% Similarity=0.472 Sum_probs=26.5
Q ss_pred EEEeecChHHHHHHHhhcCcCccCCCCeEEEEeccC
Q 024144 60 VVAYSRSPSFYVDLLKRRGIDIASSHDWIHILDCYT 95 (272)
Q Consensus 60 vl~fe~Spe~y~~~lk~~G~d~~s~~~ri~i~D~ys 95 (272)
.+-+|..|+.|.+++++-|+. ..+.++|.|+
T Consensus 8 w~plESnP~Vft~l~~~lGv~-----~~~~f~DVys 38 (235)
T 1cmx_A 8 VVPIESNPEVFTNFAHKLGLK-----NEWAYFDIYS 38 (235)
T ss_dssp CCCEECCHHHHHHHHHHHTBC-----TTEEEEEECC
T ss_pred eeeecCCHHHHHHHHHHcCCC-----CCcEEEEccc
Confidence 345799999999999999986 2489999998
No 33
>3r8s_4 50S ribosomal protein L36; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_4 1p86_4 1vs8_4 1vs6_4 2aw4_4 2awb_4 1vt2_4 2i2v_4 2j28_4 2i2t_4* 2qao_4* 2qba_4* 2qbc_4* 2qbe_4 2qbg_4 2qbi_4* 2qbk_4* 2qov_4 2qox_4 2qoz_4* ...
Probab=21.28 E-value=50 Score=21.88 Aligned_cols=13 Identities=31% Similarity=0.695 Sum_probs=10.1
Q ss_pred EEeccCCcEEEEE
Q 024144 242 RFKRRNGRVRVMK 254 (272)
Q Consensus 242 r~KrRnGRV~~~~ 254 (272)
++-||.|||.+.|
T Consensus 15 ~vvrR~grv~Vic 27 (38)
T 3r8s_4 15 KIVKRDGVIRVIC 27 (38)
T ss_dssp EEEEETTEEEEEE
T ss_pred eEEEECCEEEEEe
Confidence 4568999998876
No 34
>3rii_A Ubiquitin carboxyl-terminal hydrolase isozyme L5; alpha-beta-alpha fold, thiol hydroalse, cysteine protease, deubiquitinating enzyme; 2.00A {Homo sapiens} SCOP: d.3.1.0 PDB: 3ris_A 3sqa_A 3tb3_A 3a7s_A
Probab=20.46 E-value=74 Score=28.15 Aligned_cols=31 Identities=16% Similarity=0.461 Sum_probs=26.5
Q ss_pred EEeecChHHHHHHHhhcCcCccCCCCeEEEEeccC-CC
Q 024144 61 VAYSRSPSFYVDLLKRRGIDIASSHDWIHILDCYT-DP 97 (272)
Q Consensus 61 l~fe~Spe~y~~~lk~~G~d~~s~~~ri~i~D~ys-DP 97 (272)
+-+|..|+.|.+++++-|+. . +.++|.|+ ||
T Consensus 14 ~pLESnP~Vft~l~~~LGv~----~--~~f~DVysLD~ 45 (233)
T 3rii_A 14 CLMESDPGVFTELIKGFGCR----G--AQVEEIWSLEP 45 (233)
T ss_dssp CCCCCCHHHHHHHHHHTTCB----S--EEEEECSCSST
T ss_pred eeecCCHHHHHHHHHHhCCC----C--cEEEEcccCCH
Confidence 44799999999999999987 3 78999998 54
No 35
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=20.45 E-value=5.4e+02 Score=24.20 Aligned_cols=63 Identities=21% Similarity=0.210 Sum_probs=36.9
Q ss_pred EEEEEechhHHHHhcC----hHHHHHHHHhhhcCCceeEEEeeecccccchh---hHhHHhhhheeEEEeec
Q 024144 148 FSIAIDSVSEMVRHAS----ISSVAGILSNLRSHDQVSSIFWLLHSDLHEIK---FTSVLEYLSSMVASVEP 212 (272)
Q Consensus 148 ~tVaIDSLS~LL~h~s----~~~vc~lL~~Lr~~~~vssVl~LLHsDLHe~~---~v~ALe~LSstvvtv~P 212 (272)
-.|+||+++.|-...+ -..+.+++..|++. .+ .|+..-|..--+.. +-..+++++..++.+.-
T Consensus 373 ~llilDp~~~Ld~~~~~~~~~~~i~~ll~~l~~~-g~-tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ 442 (525)
T 1tf7_A 373 ARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQE-EI-TGLFTNTSDQFMGAHSITDSHISTITDTIILLQY 442 (525)
T ss_dssp SEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHT-TC-EEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEE
T ss_pred CEEEEcChHHHHhhCChHHHHHHHHHHHHHHHhC-CC-EEEEEECcccccCcccccCcccceeeeEEEEEEE
Confidence 4789999888866433 33456677777653 33 44444553211110 11346889999888753
Done!