BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024147
         (272 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1SZN|A Chain A, The Structure Of Alpha-Galactosidase
 pdb|1T0O|A Chain A, The Structure Of Alpha-Galactosidase From Trichoderma
           Reesei Complexed With Beta-D-Galactose
          Length = 417

 Score = 29.3 bits (64), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)

Query: 46  DSLFVVAEAVHAIGISVLIYKLTKERTCAG--LSLKSQELTAIFLA 89
           D +  +A+ VHA+G+ + IY      TCAG   SL  +++ A   A
Sbjct: 77  DGIDGLAKKVHALGLKLGIYSTAGTATCAGYPASLGYEDVDAADFA 122


>pdb|3LMS|A Chain A, Structure Of Human Activated Thrombin-Activatable
           Fibrinolys Inhibitor, Tafia, In Complex With
           Tick-Derived Funnelin Inh Tci
          Length = 309

 Score = 29.3 bits (64), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 5/60 (8%)

Query: 4   NKTPIHAAATWVRRQPSKIKIFLAVITAIAALVF----LRMVVEDHDSLFVVA-EAVHAI 58
           ++  + A A+++RR  ++IK ++++ +    +VF     R   +DH+ L +VA EAV AI
Sbjct: 171 SEPEVKAVASFLRRNINQIKAYISMHSYSQHIVFPYSYTRSKSKDHEELSLVASEAVRAI 230


>pdb|3D68|A Chain A, Crystal Structure Of A T325i/t329i/h333y/h335q Mutant Of
           Thrombin- Activatable Fibrinolysis Inhibitor (tafi-iiyq)
 pdb|3D68|B Chain B, Crystal Structure Of A T325i/t329i/h333y/h335q Mutant Of
           Thrombin- Activatable Fibrinolysis Inhibitor (tafi-iiyq)
 pdb|3D68|C Chain C, Crystal Structure Of A T325i/t329i/h333y/h335q Mutant Of
           Thrombin- Activatable Fibrinolysis Inhibitor (tafi-iiyq)
          Length = 424

 Score = 29.3 bits (64), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 5/60 (8%)

Query: 4   NKTPIHAAATWVRRQPSKIKIFLAVITAIAALVF----LRMVVEDHDSLFVVA-EAVHAI 58
           ++  + A A+++RR  ++IK ++++ +    +VF     R   +DH+ L +VA EAV AI
Sbjct: 286 SEPEVKAVASFLRRNINQIKAYISMHSYSQHIVFPYSYTRSKSKDHEELSLVASEAVRAI 345


>pdb|3D66|A Chain A, Crystal Structure Of Thrombin-Activatable Fibrinolysis
           Inhibitor (Tafi)
 pdb|3D66|B Chain B, Crystal Structure Of Thrombin-Activatable Fibrinolysis
           Inhibitor (Tafi)
 pdb|3D66|C Chain C, Crystal Structure Of Thrombin-Activatable Fibrinolysis
           Inhibitor (Tafi)
 pdb|3D67|A Chain A, Crystal Structure Of Thrombin-Activatable Fibrinolysis
           Inhibitor (Tafi) In Complex With
           2-Guanidino-Ethyl-Mercaptosuccinic Acid (Gemsa)
 pdb|3D67|B Chain B, Crystal Structure Of Thrombin-Activatable Fibrinolysis
           Inhibitor (Tafi) In Complex With
           2-Guanidino-Ethyl-Mercaptosuccinic Acid (Gemsa)
 pdb|3D67|C Chain C, Crystal Structure Of Thrombin-Activatable Fibrinolysis
           Inhibitor (Tafi) In Complex With
           2-Guanidino-Ethyl-Mercaptosuccinic Acid (Gemsa)
          Length = 424

 Score = 29.3 bits (64), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 5/56 (8%)

Query: 8   IHAAATWVRRQPSKIKIFLAVITAIAALVF----LRMVVEDHDSLFVVA-EAVHAI 58
           + A A+++RR  ++IK ++++ +    +VF     R   +DH+ L +VA EAV AI
Sbjct: 290 VKAVASFLRRNINQIKAYISMHSYSQHIVFPYSYTRSKSKDHEELSLVASEAVRAI 345


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.331    0.140    0.431 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,180,485
Number of Sequences: 62578
Number of extensions: 244426
Number of successful extensions: 855
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 854
Number of HSP's gapped (non-prelim): 6
length of query: 272
length of database: 14,973,337
effective HSP length: 97
effective length of query: 175
effective length of database: 8,903,271
effective search space: 1558072425
effective search space used: 1558072425
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 51 (24.3 bits)