Query 024147
Match_columns 272
No_of_seqs 117 out of 376
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 02:25:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024147.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024147hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3106 ER lumen protein retai 100.0 2.1E-83 4.5E-88 558.6 16.2 211 45-269 1-212 (212)
2 COG5196 ERD2 ER lumen protein 100.0 2.1E-69 4.5E-74 464.2 17.1 211 46-269 2-214 (214)
3 PF00810 ER_lumen_recept: ER l 100.0 5.5E-55 1.2E-59 370.3 13.0 144 72-216 1-147 (147)
4 TIGR00951 2A43 Lysosomal Cysti 96.1 0.45 9.7E-06 43.1 15.8 138 56-195 15-172 (220)
5 KOG3211 Predicted endoplasmic 95.7 0.18 3.9E-06 45.8 11.3 174 63-256 49-225 (230)
6 PF04193 PQ-loop: PQ loop repe 93.6 0.33 7.2E-06 34.5 6.4 54 162-215 2-55 (61)
7 PF04193 PQ-loop: PQ loop repe 92.5 0.21 4.7E-06 35.5 4.1 45 49-93 6-50 (61)
8 smart00679 CTNS Repeated motif 84.3 0.73 1.6E-05 28.6 1.7 22 64-85 7-28 (32)
9 KOG1623 Multitransmembrane pro 67.6 1.1E+02 0.0023 28.6 14.2 181 48-247 6-204 (243)
10 PHA02246 hypothetical protein 65.7 55 0.0012 28.9 8.8 153 63-247 23-179 (192)
11 smart00679 CTNS Repeated motif 59.2 8.6 0.00019 23.7 2.1 26 175-200 1-26 (32)
12 KOG2913 Predicted membrane pro 55.5 76 0.0017 29.7 8.5 44 168-211 172-215 (260)
13 COG4095 Uncharacterized conser 49.4 71 0.0015 25.4 6.2 40 51-90 11-50 (89)
14 TIGR00951 2A43 Lysosomal Cysti 49.3 72 0.0016 28.8 7.2 39 172-210 14-52 (220)
15 COG4095 Uncharacterized conser 33.4 1.7E+02 0.0038 23.2 6.1 48 167-214 10-57 (89)
16 KOG2489 Transmembrane protein 33.1 15 0.00032 37.7 0.1 55 138-192 440-499 (592)
17 PF02790 COX2_TM: Cytochrome C 32.2 52 0.0011 24.3 3.0 45 110-154 35-80 (84)
18 PF02109 DAD: DAD family; Int 29.1 2.4E+02 0.0052 23.3 6.5 61 11-72 12-77 (112)
No 1
>KOG3106 consensus ER lumen protein retaining receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-83 Score=558.58 Aligned_cols=211 Identities=44% Similarity=0.764 Sum_probs=203.8
Q ss_pred ChhHHHHhhHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHhhhhccee-echhHHHHHHHHHHHHHHHHHHhhhc
Q 024147 45 HDSLFVVAEAVHAIGISVLIYKLTKERTCAGLSLKSQELTAIFLAVRLYCSFV-MEYDIHTLLDSATLVTTLWVIYMMRF 123 (272)
Q Consensus 45 ~~~~~llgdl~hl~s~~iLl~KI~~~kS~~GiSlKTQ~LyalVf~~Rl~~~~~-~~y~~~t~~k~~~l~~s~~iiyli~~ 123 (272)
+|.||++||++|++|+++|++||+|+|||+|||+|||+|||+||++||+|.|. .++++|++||++++++|.+++|+|++
T Consensus 1 mn~fr~~gd~~H~~~i~vLi~Ki~ktrsCaGiSlKSQ~L~Alvf~~Ryldlf~~~~s~ynt~mki~fl~~t~~ivymi~~ 80 (212)
T KOG3106|consen 1 MNNFRFAGDLSHLAAIIVLILKIWKTKSCAGISLKSQELFALVFATRYLDLFTFYESLYNTIMKIAFLASTLWIVYMIRF 80 (212)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999886 56777899999999999999999999
Q ss_pred ccccccccccccchhhhhhhHHHHHHHHhCCCCCccchhhHHHHHHHHHHHhhhhhHHHHHHhcCCccchhHHHHHHHHH
Q 024147 124 KLRASYMDDKDNFAIYYVLIPCAVLSFLIHPSTHHHLVNRISWAFCVYLEAVSVLPQLQVMQNTKIVEPFTAHYVFALGV 203 (272)
Q Consensus 124 kyk~TY~~~~Dtf~~~~liiP~~vLa~i~~p~~~~~~~~eilWtFSiyLEsVAILPQL~mlqk~g~ve~lTshYv~~LG~ 203 (272)
|+|+|||+|+|||+++|+++||++||+++||+. .+.|++||||+|||||||||||+|+||+||+|++|+||+||||+
T Consensus 81 k~~~tYd~~~DtFri~~llvp~~vlsl~i~~~~---t~~eilWtFsiyLEsVaILPQL~~lq~tg~~E~~TahYvfaLG~ 157 (212)
T KOG3106|consen 81 KLRATYDKEKDTFRIEYLLVPSAVLSLLINHSF---TILEILWTFSIYLESVAILPQLFMLQKTGEAETITAHYLFALGL 157 (212)
T ss_pred HHHHHHhcccCceeEEEEehhheeeeeeecCCc---cHHHHHHHHHHHHHHHHHhHHHHHHHhcCCccchHHHHHHHHHH
Confidence 999999999999999999999999999999984 48999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccccccccccCCCcchHHHHHHHHHHHHHhhhhhhhhhhhhCCcceeecCC
Q 024147 204 ARFLSCAHWILQVLDTRGRLLTALGYGLWPSMVLLSEIVQTFILADFCYYYVKSLIGGQLVLRLPS 269 (272)
Q Consensus 204 yR~ly~~~Wi~ry~~~~~~~~~~~~~g~~~~~~ii~givQt~ly~DF~y~Y~~~~~~G~~~~~LP~ 269 (272)
||++|++|||+|+.+++ +||++++++|+|||++||||||+|++++++|+| ++||+
T Consensus 158 yR~ly~~~WI~r~~~e~----------~~~~iai~agiVQT~ly~DFfy~Y~~~v~~g~~-~~LP~ 212 (212)
T KOG3106|consen 158 YRALYIANWIYRYVTED----------FWDPIAIVAGIVQTVLYADFFYLYVTKVLQGKK-LKLPA 212 (212)
T ss_pred HHHHHHHHHHHHHHhhc----------cccchHHHHHHHHHHHHHhHHHHHHHHHHcCCc-CCCCC
Confidence 99999999999999873 799999999999999999999999999999999 99995
No 2
>COG5196 ERD2 ER lumen protein retaining receptor [Intracellular trafficking and secretion]
Probab=100.00 E-value=2.1e-69 Score=464.15 Aligned_cols=211 Identities=31% Similarity=0.570 Sum_probs=195.8
Q ss_pred hhHHHHhhHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHhhhhcceeech--hHHHHHHHHHHHHHHHHHHhhhc
Q 024147 46 DSLFVVAEAVHAIGISVLIYKLTKERTCAGLSLKSQELTAIFLAVRLYCSFVMEY--DIHTLLDSATLVTTLWVIYMMRF 123 (272)
Q Consensus 46 ~~~~llgdl~hl~s~~iLl~KI~~~kS~~GiSlKTQ~LyalVf~~Rl~~~~~~~y--~~~t~~k~~~l~~s~~iiyli~~ 123 (272)
|.||.+||++|++|+.+|++||.|+|+|+|+|+|||.||++||++||+|.+...+ -+|.+||+++++++.+++++|+.
T Consensus 2 ~~Fr~lGD~~Hlasi~vLih~ik~tr~csGlSlKtq~Ly~lVfitRYldLf~f~~~slYn~lMki~FI~s~~yI~~lm~~ 81 (214)
T COG5196 2 DTFRFLGDFLHLASIAVLIHKIKRTRSCSGLSLKTQFLYSLVFITRYLDLFDFYARSLYNSLMKILFIGSQVYILFLMRF 81 (214)
T ss_pred cHHHHHhHHHHHHHHHHHHHHhhhcceecceehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7899999999999999999999999999999999999999999999988763221 24599999999999999999999
Q ss_pred ccccccccccccchhhhhhhHHHHHHHHhCCCCCccchhhHHHHHHHHHHHhhhhhHHHHHHhcCCccchhHHHHHHHHH
Q 024147 124 KLRASYMDDKDNFAIYYVLIPCAVLSFLIHPSTHHHLVNRISWAFCVYLEAVSVLPQLQVMQNTKIVEPFTAHYVFALGV 203 (272)
Q Consensus 124 kyk~TY~~~~Dtf~~~~liiP~~vLa~i~~p~~~~~~~~eilWtFSiyLEsVAILPQL~mlqk~g~ve~lTshYv~~LG~ 203 (272)
++++||||..|||+++++++||+++|+++|.+ ..+.+++||||+|||||||||||+|+||.||-|++|+||++++|+
T Consensus 82 ~~r~tYdk~lDtF~i~~ll~gsav~slff~~~---~tisnvlwtfS~wLESVAILPQL~mLq~~GeteslT~hYvfamgL 158 (214)
T COG5196 82 KYRSTYDKKLDTFNILTLLVGSAVFSLFFTRG---GTISNVLWTFSLWLESVAILPQLVMLQEAGETESLTSHYVFAMGL 158 (214)
T ss_pred cccchHHHhhhhhhhhhhhhhhhhheeeecCC---ccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeHHHHHHHHHH
Confidence 99999999999999999999999999999865 569999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccccccccccCCCcchHHHHHHHHHHHHHhhhhhhhhhhhhCCcceeecCC
Q 024147 204 ARFLSCAHWILQVLDTRGRLLTALGYGLWPSMVLLSEIVQTFILADFCYYYVKSLIGGQLVLRLPS 269 (272)
Q Consensus 204 yR~ly~~~Wi~ry~~~~~~~~~~~~~g~~~~~~ii~givQt~ly~DF~y~Y~~~~~~G~~~~~LP~ 269 (272)
||++|++|||+|+..+.++ -+-+++.+|++||++|.|||+.|+|.|.+|++ ++||.
T Consensus 159 YRalYip~wI~r~~~~~kk---------~~~iai~aGivQTlLY~DFf~iYyr~V~rGk~-f~LP~ 214 (214)
T COG5196 159 YRALYIPYWILRKVYDIKK---------TGNIAIAAGIVQTLLYLDFFAIYYRYVFRGKS-FSLPS 214 (214)
T ss_pred HHHhhhhHHHHHhhhcccc---------cccchhHHHHHHHHHHHHhHHhhhhhhhcccc-cCCCC
Confidence 9999999999999765432 23368999999999999999999999999999 89995
No 3
>PF00810 ER_lumen_recept: ER lumen protein retaining receptor; InterPro: IPR000133 Proteins resident in the lumen of the endoplasmic reticulum (ER) contain a C-terminal tetrapeptide, commonly known as Lys-Asp-Glu-Leu (KDEL) in mammals and His-Asp-Glu-Leu (HDEL) in yeast (Saccharomyces cerevisiae) that acts as a signal for their retrieval from subsequent compartments of the secretory pathway. The receptor for this signal is a ~26 kDa Golgi membrane protein, initially identified as the ERD2 gene product in S. cerevisiae. The receptor molecule, known variously as the ER lumen protein retaining receptor or the 'KDEL receptor', is believed to cycle between the cis side of the Golgi apparatus and the ER. It has also been characterised in a number of other species, including plants, Plasmodium, Drosophila and mammals. In mammals, 2 highly related forms of the receptor are known. The KDEL receptor is a highly hydrophobic protein of 220 residues; its sequence exhibits 7 hydrophobic regions, all of which have been suggested to traverse the membrane []. More recently, however, it has been suggested that only 6 of these regions are transmembrane (TM), resulting in both N- and C-termini on the cytoplasmic side of the membrane.; GO: 0046923 ER retention sequence binding, 0006621 protein retention in ER lumen, 0016021 integral to membrane
Probab=100.00 E-value=5.5e-55 Score=370.28 Aligned_cols=144 Identities=40% Similarity=0.767 Sum_probs=136.4
Q ss_pred cccccccchhHHHHHHHHhhhhcceeec-h--hHHHHHHHHHHHHHHHHHHhhhcccccccccccccchhhhhhhHHHHH
Q 024147 72 TCAGLSLKSQELTAIFLAVRLYCSFVME-Y--DIHTLLDSATLVTTLWVIYMMRFKLRASYMDDKDNFAIYYVLIPCAVL 148 (272)
Q Consensus 72 S~~GiSlKTQ~LyalVf~~Rl~~~~~~~-y--~~~t~~k~~~l~~s~~iiyli~~kyk~TY~~~~Dtf~~~~liiP~~vL 148 (272)
||+|+|+|||+||++||++||+|++..+ | .+|++||++++++|++++|+|+.|||+|||+++|+|+..++++||++|
T Consensus 1 S~~GlSlktq~ly~~vf~~Ryldl~~f~~~~s~y~~~~k~~~i~~s~~iiyli~~~~~~Ty~~~~D~f~~~~li~p~~vL 80 (147)
T PF00810_consen 1 SCSGLSLKTQILYAIVFLTRYLDLFWFESYLSLYNTIMKVFFIVSSLYIIYLIFFKYKSTYDKEIDTFRLEYLIVPCFVL 80 (147)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhheeehhhhhccccchhhhHHHHHHHHH
Confidence 8999999999999999999999983222 2 246999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCccchhhHHHHHHHHHHHhhhhhHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHh
Q 024147 149 SFLIHPSTHHHLVNRISWAFCVYLEAVSVLPQLQVMQNTKIVEPFTAHYVFALGVARFLSCAHWILQV 216 (272)
Q Consensus 149 a~i~~p~~~~~~~~eilWtFSiyLEsVAILPQL~mlqk~g~ve~lTshYv~~LG~yR~ly~~~Wi~ry 216 (272)
|+++|| .+++++.|++||||+|||||||+|||+|+||+||+|++|+||+++||+||++|++|||+||
T Consensus 81 a~i~~p-~~~~~~~ei~wtfSi~LEsvAIlPQL~m~~k~~~ve~ltshYv~~Lg~yR~ly~~~Wi~rY 147 (147)
T PF00810_consen 81 ALIFHP-LNSFFFLEILWTFSIYLESVAILPQLFMLQKTGEVENLTSHYVFALGLYRALYLLNWIYRY 147 (147)
T ss_pred HHHHhc-cccchHHHHHHHHHHHHHHHHHhHHHHHHHHhcCeeehHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999 7789999999999999999999999999999999999999999999999999999999996
No 4
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=96.05 E-value=0.45 Score=43.07 Aligned_cols=138 Identities=15% Similarity=0.153 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHhhccccccccccchhHHHHHHHHhh-------hhcce-eechh---HHHHHHHHH-----HHHHHHHHH
Q 024147 56 HAIGISVLIYKLTKERTCAGLSLKSQELTAIFLAVR-------LYCSF-VMEYD---IHTLLDSAT-----LVTTLWVIY 119 (272)
Q Consensus 56 hl~s~~iLl~KI~~~kS~~GiSlKTQ~LyalVf~~R-------l~~~~-~~~y~---~~t~~k~~~-----l~~s~~iiy 119 (272)
...++.-=+.|++|+||++|+|+..-.+-.+.+++- +++.. ..+|. +....|-++ ++.++.+++
T Consensus 15 ~~~~~~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~yn~~~~~~~~~~~~~~~~~~~v~~edl~~ai~~~il~~l~~~ 94 (220)
T TIGR00951 15 WSISFYPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIFNFLQLYCWSITNEFPLSSPGVTQNDVFFTLHAILICFIVLH 94 (220)
T ss_pred HHHHHhhHHHHHHhccccCCcCHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccccCCCcHHHHHHHHHHHHHHHHHHH
Confidence 555666677999999999999999987655555433 22111 11111 111112222 222333333
Q ss_pred hhhcccccccccccccch--h--hhhhhHHHHHHHHhCCCCCccchhhHHHHHHHHHHHhhhhhHHHHHHhcCCccchhH
Q 024147 120 MMRFKLRASYMDDKDNFA--I--YYVLIPCAVLSFLIHPSTHHHLVNRISWAFCVYLEAVSVLPQLQVMQNTKIVEPFTA 195 (272)
Q Consensus 120 li~~kyk~TY~~~~Dtf~--~--~~liiP~~vLa~i~~p~~~~~~~~eilWtFSiyLEsVAILPQL~mlqk~g~ve~lTs 195 (272)
.+. ++.+..++...+.. . ..+.+.+..+..+..+ .....+.+.++.-.+-+-.++-+||..+-.|.+..+.+..
T Consensus 95 q~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~l~~l~~iki~is~ikyiPQi~~Ny~~ksT~glSi 172 (220)
T TIGR00951 95 QCG-DYERGWQRVSNPWILRILVALLACFATLLVALLSP-ITPLAFVTMLSYIKVAVTLVKYFPQAATNYHNKSTGQLSI 172 (220)
T ss_pred HHh-hccccccccchhHHHHHHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCCcCCH
Confidence 322 22211111111111 1 1222222222233332 2234566777777888888899999999998865554433
No 5
>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]
Probab=95.66 E-value=0.18 Score=45.82 Aligned_cols=174 Identities=20% Similarity=0.251 Sum_probs=102.7
Q ss_pred HHHHhhccccccccccchhHHHHHHHHhhhhcceeechhHHHHHHHHHHHHHHHHHHhhhcccccccccccccchhhhhh
Q 024147 63 LIYKLTKERTCAGLSLKSQELTAIFLAVRLYCSFVMEYDIHTLLDSATLVTTLWVIYMMRFKLRASYMDDKDNFAIYYVL 142 (272)
Q Consensus 63 Ll~KI~~~kS~~GiSlKTQ~LyalVf~~Rl~~~~~~~y~~~t~~k~~~l~~s~~iiyli~~kyk~TY~~~~Dtf~~~~li 142 (272)
=+.||..+||+.|+|+.+|+|=.+-++.-+--.+.+-|+-.+.+|..++..+..++-++.+.|+-. .-..|.+--.+.+
T Consensus 49 QI~kI~aakSa~GLSv~s~~LElvgytvtl~Y~~~~g~pFss~gE~~fLl~Q~vili~~if~f~~~-~~~~v~~l~~~~~ 127 (230)
T KOG3211|consen 49 QIMKIRAAKSARGLSVVSLLLELVGYTVTLSYSYTSGYPFSSYGEYPFLLLQAVILILCIFHFSGQ-TVTVVQFLGYIAL 127 (230)
T ss_pred HHHHHHhhcccccccHHHHHHHHHHHHheeeehhhcCCCchhHHHHHHHHHHHHHHHHHHHHhccc-eeehhhHHHHHHH
Confidence 358999999999999999998887776443112223333446789999999998888887877711 1123344444444
Q ss_pred hHHHHHHHHhCCCCCccchhhHHHHHHHHHHHhhhhhHHHHHHhc---CCccchhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 024147 143 IPCAVLSFLIHPSTHHHLVNRISWAFCVYLEAVSVLPQLQVMQNT---KIVEPFTAHYVFALGVARFLSCAHWILQVLDT 219 (272)
Q Consensus 143 iP~~vLa~i~~p~~~~~~~~eilWtFSiyLEsVAILPQL~mlqk~---g~ve~lTshYv~~LG~yR~ly~~~Wi~ry~~~ 219 (272)
++....+... +.++.+..=+-.+-.-.++=+||..-..++ |...-+|..--+.=.+.|.++= ..|.
T Consensus 128 v~~~~~sk~~-----p~~~~~L~~~~~l~i~v~sr~~Qi~~n~~~~~tgqls~it~fLsf~g~lARifts------iq~t 196 (230)
T KOG3211|consen 128 VVSVLASKAL-----PLWIITLAQNLCLPIVVVSRLLQIQCNYHNRSTGQLSLITVFLSFGGCLARIFTS------IQET 196 (230)
T ss_pred HHHHHHHhhh-----hHHHHHHHHhcCchhhhHHHHHHHHHHhcccccchhHHHHHHHHhhhHHHHHHHH------HHhc
Confidence 4433332211 122333333333334457889999988876 5666666666666667776642 2332
Q ss_pred cccccccccCCCcchHHHHHHHHHHHHHhhhhhhhhh
Q 024147 220 RGRLLTALGYGLWPSMVLLSEIVQTFILADFCYYYVK 256 (272)
Q Consensus 220 ~~~~~~~~~~g~~~~~~ii~givQt~ly~DF~y~Y~~ 256 (272)
+....+ .--+++-..+-.+.+.++.|+=+
T Consensus 197 -~d~~ml-------l~~v~s~~~Ng~i~aq~l~Y~s~ 225 (230)
T KOG3211|consen 197 -GDFLML-------LRFVISLALNGLITAQVLRYWST 225 (230)
T ss_pred -CChhhH-------HHHHHHHHHhHHHHHHHHHHHhc
Confidence 211111 01234556677778877766543
No 6
>PF04193 PQ-loop: PQ loop repeat
Probab=93.56 E-value=0.33 Score=34.48 Aligned_cols=54 Identities=19% Similarity=0.160 Sum_probs=48.9
Q ss_pred hhHHHHHHHHHHHhhhhhHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHH
Q 024147 162 NRISWAFCVYLEAVSVLPQLQVMQNTKIVEPFTAHYVFALGVARFLSCAHWILQ 215 (272)
Q Consensus 162 ~eilWtFSiyLEsVAILPQL~mlqk~g~ve~lTshYv~~LG~yR~ly~~~Wi~r 215 (272)
.+++...+..+++++-+||+....|++.+|.+.--++.......++.+++.+..
T Consensus 2 ~~~~g~i~~~~~~~~~lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~~~~ 55 (61)
T PF04193_consen 2 SNILGIISIVLWIISFLPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYSILS 55 (61)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHh
Confidence 467788899999999999999999999999999999999999999988887765
No 7
>PF04193 PQ-loop: PQ loop repeat
Probab=92.50 E-value=0.21 Score=35.46 Aligned_cols=45 Identities=22% Similarity=0.093 Sum_probs=35.9
Q ss_pred HHHhhHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHhhhh
Q 024147 49 FVVAEAVHAIGISVLIYKLTKERTCAGLSLKSQELTAIFLAVRLY 93 (272)
Q Consensus 49 ~llgdl~hl~s~~iLl~KI~~~kS~~GiSlKTQ~LyalVf~~Rl~ 93 (272)
-.++-..-+++.+-=++|.+|+||+.|+|..+..+..+..+.+..
T Consensus 6 g~i~~~~~~~~~lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~ 50 (61)
T PF04193_consen 6 GIISIVLWIISFLPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVL 50 (61)
T ss_pred HHHHHHHHHHHHHhHHHHHHHccccccccHHHHHHHHHHHHHHHH
Confidence 344555666677777899999999999999999988888777754
No 8
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=84.28 E-value=0.73 Score=28.63 Aligned_cols=22 Identities=27% Similarity=0.215 Sum_probs=18.6
Q ss_pred HHHhhccccccccccchhHHHH
Q 024147 64 IYKLTKERTCAGLSLKSQELTA 85 (272)
Q Consensus 64 l~KI~~~kS~~GiSlKTQ~Lya 85 (272)
++|++|+||+.|+|.-+..+..
T Consensus 7 i~~~~~~ks~~glS~~~~~l~~ 28 (32)
T smart00679 7 IIKNYRRKSTEGLSILFVLLWL 28 (32)
T ss_pred HHHHHHcCCcCcCCHHHHHHHH
Confidence 6899999999999998866544
No 9
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=67.60 E-value=1.1e+02 Score=28.57 Aligned_cols=181 Identities=15% Similarity=0.185 Sum_probs=88.3
Q ss_pred HHHHhhHHHHHHHH------HHHHHhhccccccccccchhHHHHHHH--Hhhhhcceeechh---HHHHHHHHHHHHHHH
Q 024147 48 LFVVAEAVHAIGIS------VLIYKLTKERTCAGLSLKSQELTAIFL--AVRLYCSFVMEYD---IHTLLDSATLVTTLW 116 (272)
Q Consensus 48 ~~llgdl~hl~s~~------iLl~KI~~~kS~~GiSlKTQ~LyalVf--~~Rl~~~~~~~y~---~~t~~k~~~l~~s~~ 116 (272)
..++|.+....+++ -...+|+|+||.+|.|.-==++-.+.- ..||-..-..++- .| .+.+.+.
T Consensus 6 ~~l~~i~~~~is~~~fl~pv~tf~~I~KkkS~e~~s~~Pfl~~ll~~~lWl~YG~~~~~d~llitIN------~~G~~ie 79 (243)
T KOG1623|consen 6 LFLFGILGNIISFGVFLSPVPTFRRIRKKKSVEGFSSLPFLMGLLSCSLWLYYGLLKVHDYLLITIN------GIGLVIE 79 (243)
T ss_pred HHHHHHHHHHHhHHHhhcCchhHHHhhcccCcCCCCCcCcHHHHHHHHHHHHhhhhccCceEEEEEe------hhcHHHH
Confidence 44566666666654 345899999999999976544333322 2344211111110 11 2333334
Q ss_pred HHHhhhcccccccccccccc---hhhhhhhHHHHHHHHhCCCCCcc-chhhHHH--HHHHHHHHhhhhhHHHHHHhcCCc
Q 024147 117 VIYMMRFKLRASYMDDKDNF---AIYYVLIPCAVLSFLIHPSTHHH-LVNRISW--AFCVYLEAVSVLPQLQVMQNTKIV 190 (272)
Q Consensus 117 iiyli~~kyk~TY~~~~Dtf---~~~~liiP~~vLa~i~~p~~~~~-~~~eilW--tFSiyLEsVAILPQL~mlqk~g~v 190 (272)
++|.+.+-|..+-++..+-. ....+.+-++.....+|.+.++. ..--+|= +-++|.-.++.++ +-=|++.+
T Consensus 80 ~~Yi~~f~~ya~~k~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~lG~vc~~~nI~~~~sPL~~m~---~VIktkSv 156 (243)
T KOG1623|consen 80 TVYISIFLYYAPKKKTVKIVLALVLGVIGLIILLTLLLFHDPERRVSVLGIVCAVFNISMFAAPLSVIR---KVIKTKSV 156 (243)
T ss_pred HHHHHHHheecCchheeEeeehHHHHHHHHHHHHHHHhcCCcceeeeeeehhhhhhhHHhhhccHHhhh---hheecCce
Confidence 44444444433333322211 11111211222223344332211 2223333 3455666666666 44466888
Q ss_pred cchhHHHHHHHHHHHHHHHHHH-HHHhhhccccccccccCCCcchHHHHHHHHHHHHH
Q 024147 191 EPFTAHYVFALGVARFLSCAHW-ILQVLDTRGRLLTALGYGLWPSMVLLSEIVQTFIL 247 (272)
Q Consensus 191 e~lTshYv~~LG~yR~ly~~~W-i~ry~~~~~~~~~~~~~g~~~~~~ii~givQt~ly 247 (272)
|.+---- -+.-++...-| +|...-.+ ...+..++ +..+.|++|..+|
T Consensus 157 E~mPf~L----s~a~fl~a~~W~lYGlli~D--~~IaipN~----iG~~l~~~QL~Ly 204 (243)
T KOG1623|consen 157 EYMPFPL----SFALFLVAVQWLLYGLLIKD--FFIAIPNV----LGFLLGLIQLILY 204 (243)
T ss_pred eeechHH----HHHHHHHHHHHHHHHHHhcC--eEEEcccH----HHHHHHHHHHHHh
Confidence 8775433 33445556668 44443321 11122222 5778999999999
No 10
>PHA02246 hypothetical protein
Probab=65.74 E-value=55 Score=28.86 Aligned_cols=153 Identities=16% Similarity=0.210 Sum_probs=80.0
Q ss_pred HHHHhhccccccccccchhHHHHHHHHhhh--hcceeechhHHHHHHHHH--HHHHHHHHHhhhcccccccccccccchh
Q 024147 63 LIYKLTKERTCAGLSLKSQELTAIFLAVRL--YCSFVMEYDIHTLLDSAT--LVTTLWVIYMMRFKLRASYMDDKDNFAI 138 (272)
Q Consensus 63 Ll~KI~~~kS~~GiSlKTQ~LyalVf~~Rl--~~~~~~~y~~~t~~k~~~--l~~s~~iiyli~~kyk~TY~~~~Dtf~~ 138 (272)
-+..+.++||..|+|- -.-|++++..-. .+....+- +...+++ +-..+-++.+.-..| |++|-|..
T Consensus 23 gL~slvk~~nv~GvS~--~FWYLi~~tvgiSfyNlL~T~~---~~fqi~svg~nl~lgivcLlv~~~-----rkkd~f~~ 92 (192)
T PHA02246 23 GLVALVKAESVKGVSN--YFWYLIVATVGISFYNLLLTDA---SVFQIVSVGLNLTLGIVCLLVASY-----RKKDYFSI 92 (192)
T ss_pred hHHHHhhhcccccHHH--HHHHHHHHHHHHHHHHHHhcCC---ceEEEeeeehhhhhhhhheeeehh-----hccccccc
Confidence 3467889999999984 456777765442 11110000 0001111 011111222222223 34576766
Q ss_pred hhhhhHHHHHHHHhCCCCCccchhhHHHHHHHHHHHhhhhhHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhh
Q 024147 139 YYVLIPCAVLSFLIHPSTHHHLVNRISWAFCVYLEAVSVLPQLQVMQNTKIVEPFTAHYVFALGVARFLSCAHWILQVLD 218 (272)
Q Consensus 139 ~~liiP~~vLa~i~~p~~~~~~~~eilWtFSiyLEsVAILPQL~mlqk~g~ve~lTshYv~~LG~yR~ly~~~Wi~ry~~ 218 (272)
.++++-++.+-.+ . ...|+.-+-+.----.|-.||...+.|++..|....-.-..+|..-++-..+-... .
T Consensus 93 ~fiiifSLllfll-~------~~~evtQtVat~tIiLaYi~QIIqfyKTK~SEg~n~~l~lii~~GL~~L~~~m~Lt--h 163 (192)
T PHA02246 93 PFIIVFSLLLFLL-S------DFTALTQTVATITIILAYVTQITTFYKTKSAEGTNRFLFLIIGLGLASLIVSMVLT--H 163 (192)
T ss_pred hHHHHHHHHHHHH-h------hhHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHHHHHHHHhhh--C
Confidence 6666544433222 1 12444444444444568899999999999998877665555565544433333221 1
Q ss_pred ccccccccccCCCcchHHHHHHHHHHHHH
Q 024147 219 TRGRLLTALGYGLWPSMVLLSEIVQTFIL 247 (272)
Q Consensus 219 ~~~~~~~~~~~g~~~~~~ii~givQt~ly 247 (272)
-.+..+++|+++..+.
T Consensus 164 -------------v~~hIiiTEf~N~iLi 179 (192)
T PHA02246 164 -------------TYVHIIATEFVNFVLI 179 (192)
T ss_pred -------------CcceeeHHHHHHHHHH
Confidence 1122578999888764
No 11
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=59.20 E-value=8.6 Score=23.67 Aligned_cols=26 Identities=31% Similarity=0.393 Sum_probs=21.3
Q ss_pred hhhhhHHHHHHhcCCccchhHHHHHH
Q 024147 175 VSVLPQLQVMQNTKIVEPFTAHYVFA 200 (272)
Q Consensus 175 VAILPQL~mlqk~g~ve~lTshYv~~ 200 (272)
++.+||.....|++.++.+..-+++.
T Consensus 1 ~~~~PQi~~~~~~ks~~glS~~~~~l 26 (32)
T smart00679 1 VSLLPQIIKNYRRKSTEGLSILFVLL 26 (32)
T ss_pred CcchhHHHHHHHcCCcCcCCHHHHHH
Confidence 46799999999999999887666653
No 12
>KOG2913 consensus Predicted membrane protein [Function unknown]
Probab=55.47 E-value=76 Score=29.70 Aligned_cols=44 Identities=11% Similarity=-0.006 Sum_probs=31.9
Q ss_pred HHHHHHHhhhhhHHHHHHhcCCccchhHHHHHHHHHHHHHHHHH
Q 024147 168 FCVYLEAVSVLPQLQVMQNTKIVEPFTAHYVFALGVARFLSCAH 211 (272)
Q Consensus 168 FSiyLEsVAILPQL~mlqk~g~ve~lTshYv~~LG~yR~ly~~~ 211 (272)
-|--++.-+.+||..+-.|.+.+|.++--.-++..+....|..-
T Consensus 172 l~a~ly~~~rIPQI~~n~~~~s~eGls~~~F~~~~~~n~~y~~s 215 (260)
T KOG2913|consen 172 LSALLYLGARIPQIILNHLRKSTEGLSLLAFAFNSLGNTTYILS 215 (260)
T ss_pred HHHHHHcccccchhhhhhccCccchhHHHHHHHHHccccccccc
Confidence 45678889999999999999999988874444444444444443
No 13
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=49.42 E-value=71 Score=25.39 Aligned_cols=40 Identities=20% Similarity=0.228 Sum_probs=31.2
Q ss_pred HhhHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHh
Q 024147 51 VAEAVHAIGISVLIYKLTKERTCAGLSLKSQELTAIFLAV 90 (272)
Q Consensus 51 lgdl~hl~s~~iLl~KI~~~kS~~GiSlKTQ~LyalVf~~ 90 (272)
.|...-.++++.=+.|+.|+||.+++|+-+-+...+..+.
T Consensus 11 ia~ilttf~flPQ~iki~ktK~t~~Isl~~fii~~ia~~l 50 (89)
T COG4095 11 IAGILTTFAFLPQLIKIIKTKNTASISLPMFIILNIALFL 50 (89)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHH
Confidence 4566677788888999999999999999886655554433
No 14
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=49.26 E-value=72 Score=28.79 Aligned_cols=39 Identities=18% Similarity=0.061 Sum_probs=28.9
Q ss_pred HHHhhhhhHHHHHHhcCCccchhHHHHHHHHHHHHHHHH
Q 024147 172 LEAVSVLPQLQVMQNTKIVEPFTAHYVFALGVARFLSCA 210 (272)
Q Consensus 172 LEsVAILPQL~mlqk~g~ve~lTshYv~~LG~yR~ly~~ 210 (272)
.=+++-+||+....|++.+|.+.-.++..--..=+.+..
T Consensus 14 ~~~~~~~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~ 52 (220)
T TIGR00951 14 AWSISFYPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVI 52 (220)
T ss_pred HHHHHHhhHHHHHHhccccCCcCHHHHHHHHHHHHHHHH
Confidence 335678999999999999999988888844443333333
No 15
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=33.37 E-value=1.7e+02 Score=23.22 Aligned_cols=48 Identities=27% Similarity=0.269 Sum_probs=37.4
Q ss_pred HHHHHHHHhhhhhHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHH
Q 024147 167 AFCVYLEAVSVLPQLQVMQNTKIVEPFTAHYVFALGVARFLSCAHWIL 214 (272)
Q Consensus 167 tFSiyLEsVAILPQL~mlqk~g~ve~lTshYv~~LG~yR~ly~~~Wi~ 214 (272)
+.+--+-.+|.+||+.-.-|+++..+++--....+..++++-+++=+.
T Consensus 10 ~ia~ilttf~flPQ~iki~ktK~t~~Isl~~fii~~ia~~lwliygIL 57 (89)
T COG4095 10 TIAGILTTFAFLPQLIKIIKTKNTASISLPMFIILNIALFLWLIYGIL 57 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 344456678999999999999999999888888888888875554433
No 16
>KOG2489 consensus Transmembrane protein [General function prediction only]
Probab=33.11 E-value=15 Score=37.73 Aligned_cols=55 Identities=24% Similarity=0.219 Sum_probs=32.0
Q ss_pred hhhhhhHHH----HHHHHhCCCCCcc-chhhHHHHHHHHHHHhhhhhHHHHHHhcCCccc
Q 024147 138 IYYVLIPCA----VLSFLIHPSTHHH-LVNRISWAFCVYLEAVSVLPQLQVMQNTKIVEP 192 (272)
Q Consensus 138 ~~~liiP~~----vLa~i~~p~~~~~-~~~eilWtFSiyLEsVAILPQL~mlqk~g~ve~ 192 (272)
+.|++.|-. |-|++-.|..+.+ |.++.+..+=.----+-++|||+.-.|-+.|.-
T Consensus 440 Ls~~L~PL~vg~aVYSLlY~~hKsWYSWvLn~l~~~vy~FGFi~M~PQLFINYKLKSVAH 499 (592)
T KOG2489|consen 440 LSYLLFPLLVGGAVYSLLYVEHKSWYSWVLNSLYNGVYAFGFIFMLPQLFINYKLKSVAH 499 (592)
T ss_pred HHHHHHHHHHHHHHHhhhhcccccHHHHHHHHHHhHHHHHHHHHhChHHHhhhhhhhhhc
Confidence 446666644 3355554443322 444555544433444568999999999876643
No 17
>PF02790 COX2_TM: Cytochrome C oxidase subunit II, transmembrane domain This family corresponds to chains b and o.; InterPro: IPR011759 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The enzyme complex consists of 3-4 subunits (prokaryotes) to up to 13 polypeptides (mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A) (see IPR001505 from INTERPRO), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c. The N-terminal domain of cytochrome C oxidase contains two transmembrane alpha-helices. ; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0009055 electron carrier activity, 0022900 electron transport chain, 0016021 integral to membrane; PDB: 3VRJ_C 2EIN_B 3AG3_B 2DYR_O 3AG1_B 2EIK_O 3ASN_B 1OCR_B 2EIJ_B 1OCC_O ....
Probab=32.20 E-value=52 Score=24.31 Aligned_cols=45 Identities=22% Similarity=0.565 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhhhc-ccccccccccccchhhhhhhHHHHHHHHhCC
Q 024147 110 TLVTTLWVIYMMRF-KLRASYMDDKDNFAIYYVLIPCAVLSFLIHP 154 (272)
Q Consensus 110 ~l~~s~~iiyli~~-kyk~TY~~~~Dtf~~~~liiP~~vLa~i~~p 154 (272)
+.......++.+.. +..+.+..+.++.-....++|++++..+.-|
T Consensus 35 ~~~V~~~l~~~~~~~~~~~~~~~~~~~lE~~WTiiP~iiLl~l~~p 80 (84)
T PF02790_consen 35 FVFVFYFLIYFLFNSKFPNKFFNHNNKLEIIWTIIPAIILLFLAFP 80 (84)
T ss_dssp HHHHHHHHHHHHHHSSSS--S---SHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeEeeecccccccccccccccccchhhhhhhhHHHHHHHHHHHhh
Confidence 33333444444444 3333333333333444678888887766544
No 18
>PF02109 DAD: DAD family; InterPro: IPR003038 Members of this family are thought to be integral membrane proteins. Some members of this family have been shown to cause apoptosis if mutated [], these proteins are known as DAD for defender against death. The family also includes the epsilon subunit of the oligosaccharyltransferase that is involved in N-linked glycosylation [].; GO: 0016021 integral to membrane
Probab=29.10 E-value=2.4e+02 Score=23.28 Aligned_cols=61 Identities=20% Similarity=0.386 Sum_probs=43.2
Q ss_pred HHHHHHhCCCchhh---HHHHHHHHHHHHHHHHhhccChhHH--HHhhHHHHHHHHHHHHHhhcccc
Q 024147 11 AATWVRRQPSKIKI---FLAVITAIAALVFLRMVVEDHDSLF--VVAEAVHAIGISVLIYKLTKERT 72 (272)
Q Consensus 11 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~d~~~~~--llgdl~hl~s~~iLl~KI~~~kS 72 (272)
...+.++.+.|+|+ ++.+++.+-++-++|-..- |++.+ .+|-++-+.|-.+|...++.+-+
T Consensus 12 ~~~Y~~~Tp~rlkliD~fl~f~~~~gilQfvYc~lv-gtFPFNaFLsGf~s~VG~fVL~vsLR~Q~~ 77 (112)
T PF02109_consen 12 WQSYLKKTPQRLKLIDAFLAFLVLTGILQFVYCILV-GTFPFNAFLSGFISCVGQFVLTVSLRIQLN 77 (112)
T ss_pred HHHHHHhCCchhhhHHHHHHHHHHHHHHHHhHheee-cCCchHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44788999999998 5666666666777777666 66554 37788888888888765554444
Done!