Query 024147
Match_columns 272
No_of_seqs 117 out of 376
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 03:12:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024147.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024147hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xzm_V RPS17E; ribosome, trans 46.2 9.8 0.00033 31.0 2.2 27 49-82 49-75 (130)
2 2ckc_A Chromodomain-helicase-D 16.3 84 0.0029 23.4 2.4 18 3-20 41-58 (80)
3 1v54_B Cytochrome C oxidase po 15.5 1.2E+02 0.0042 26.2 3.7 38 117-154 42-79 (227)
4 3u5c_R RP51A, 40S ribosomal pr 11.5 1.5E+02 0.0051 24.2 2.8 27 49-82 49-75 (136)
5 2z16_A Matrix protein 1, M1; A 9.3 3E+02 0.01 22.7 3.9 69 3-75 41-118 (165)
6 1rkl_A Dolichyl-diphosphooligo 8.5 2.5E+02 0.0086 17.8 2.5 21 22-44 10-30 (36)
7 2k37_A Chlorosome protein A; b 8.4 1.2E+02 0.0042 21.2 1.0 11 166-176 27-37 (59)
8 2lat_A Dolichyl-diphosphooligo 8.1 3.2E+02 0.011 17.3 2.9 19 23-43 11-29 (37)
9 2gsm_B Cytochrome C oxidase su 7.9 2.6E+02 0.009 24.6 3.3 15 140-154 79-93 (262)
10 3iz6_Q 40S ribosomal protein S 7.2 1.8E+02 0.0062 23.8 1.7 27 49-82 49-75 (141)
No 1
>2xzm_V RPS17E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_V
Probab=46.23 E-value=9.8 Score=31.01 Aligned_cols=27 Identities=33% Similarity=0.411 Sum_probs=21.4
Q ss_pred HHHhhHHHHHHHHHHHHHhhccccccccccchhH
Q 024147 49 FVVAEAVHAIGISVLIYKLTKERTCAGLSLKSQE 82 (272)
Q Consensus 49 ~llgdl~hl~s~~iLl~KI~~~kS~~GiSlKTQ~ 82 (272)
+++|...| +.|-.+...+.|||+|-|+
T Consensus 49 kIAGYVTh-------lmkriq~gpvrgis~klqE 75 (130)
T 2xzm_V 49 KIAGFATH-------LMKRIQKGPVRGISLKVQE 75 (130)
T ss_dssp HHHHHHHH-------HHHHTTTSCCTTCCCTTTT
T ss_pred cccchhhh-------HhhhcccCcccccccchhH
Confidence 46888888 3556667788999999998
No 2
>2ckc_A Chromodomain-helicase-DNA-binding protein 7; protein-protein interaction, phosphorylation, disease mutation, nucleotide-binding; NMR {Homo sapiens} SCOP: d.76.2.1 PDB: 2v0e_A
Probab=16.29 E-value=84 Score=23.38 Aligned_cols=18 Identities=11% Similarity=0.438 Sum_probs=13.9
Q ss_pred CCCChHHHHHHHHHhCCC
Q 024147 3 GNKTPIHAAATWVRRQPS 20 (272)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~ 20 (272)
.+-++++.+.+|||+|++
T Consensus 41 e~AP~~KdL~dWLrqhP~ 58 (80)
T 2ckc_A 41 EDAPKNKDLVEWLKLHPT 58 (80)
T ss_dssp TSSCBHHHHHHHHHHCTT
T ss_pred ccCccccCHHHHHHHCCC
Confidence 344567779999999986
No 3
>1v54_B Cytochrome C oxidase polypeptide II; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: b.6.1.2 f.17.2.1 PDB: 1oco_B* 1occ_B* 1ocz_B* 1ocr_B* 1v55_B* 2dyr_B* 2dys_B* 2eij_B* 2eik_B* 2eil_B* 2eim_B* 2ein_B* 2occ_B* 2y69_B* 2ybb_M* 2zxw_B* 3abk_B* 3abl_B* 3abm_B* 3ag1_B* ...
Probab=15.49 E-value=1.2e+02 Score=26.23 Aligned_cols=38 Identities=18% Similarity=0.397 Sum_probs=18.3
Q ss_pred HHHhhhcccccccccccccchhhhhhhHHHHHHHHhCC
Q 024147 117 VIYMMRFKLRASYMDDKDNFAIYYVLIPCAVLSFLIHP 154 (272)
Q Consensus 117 iiyli~~kyk~TY~~~~Dtf~~~~liiP~~vLa~i~~p 154 (272)
.++.+..++.+.+..+....-....++|+++|.++.-|
T Consensus 42 l~~~~~~~~~~~~~~~~~~lEiiWTiiP~iil~~la~p 79 (227)
T 1v54_B 42 ISLMLTTKLTHTSTMDAQEVETIWTILPAIILILIALP 79 (227)
T ss_dssp HHHHHSCSCCCCSCCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccccccccCceeEEeeehHHHHHHHHHHHH
Confidence 34444434433333333333444667777777665433
No 4
>3u5c_R RP51A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_Q 3o30_K 3o2z_K 3u5g_R
Probab=11.54 E-value=1.5e+02 Score=24.16 Aligned_cols=27 Identities=26% Similarity=0.316 Sum_probs=19.7
Q ss_pred HHHhhHHHHHHHHHHHHHhhccccccccccchhH
Q 024147 49 FVVAEAVHAIGISVLIYKLTKERTCAGLSLKSQE 82 (272)
Q Consensus 49 ~llgdl~hl~s~~iLl~KI~~~kS~~GiSlKTQ~ 82 (272)
+++|...|+ .|-...-.+.|||+|.|+
T Consensus 49 kIAGYVThL-------mKriq~GpvrgisiklqE 75 (136)
T 3u5c_R 49 KIAGYTTHL-------MKRIQKGPVRGISFKLQE 75 (136)
T ss_dssp HHHHHHHHH-------HHHHTTSCBTTBCCSHHH
T ss_pred ehhhhhhhh-------hcccccCCcccceeehhH
Confidence 456777765 344555678899999998
No 5
>2z16_A Matrix protein 1, M1; AIV-7M1, H5N1, structural genomics; 2.02A {Influenza a virus} PDB: 3md2_A 1ea3_A 1aa7_A
Probab=9.32 E-value=3e+02 Score=22.72 Aligned_cols=69 Identities=19% Similarity=0.247 Sum_probs=38.2
Q ss_pred CCCChHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHhhccCh-----hHH----HHhhHHHHHHHHHHHHHhhccccc
Q 024147 3 GNKTPIHAAATWVRRQPSKIKIFLAVITAIAALVFLRMVVEDHD-----SLF----VVAEAVHAIGISVLIYKLTKERTC 73 (272)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-----~~~----llgdl~hl~s~~iLl~KI~~~kS~ 73 (272)
+++...|.+++||+.++-=.-+-=|.+.+++.+ ..-|... |-. =-||--..=--+.+..|.+|..+-
T Consensus 41 gkntDLealmEWlk~r~~ls~l~k~ilg~~~~~----~~p~~~~~qrrrf~~~~l~g~g~~nnm~rgvkl~rK~KReitF 116 (165)
T 2z16_A 41 GKNTDLEALMEWLKTRPILSPLTKGILGFVFTL----TVPSERGLQRRRFVQNALNGNGDPNNMDRAVKLYKKLKREITF 116 (165)
T ss_dssp TSCCCHHHHHHHHHHCSSCCHHHHHHHHHHHHH----HSCC-----CCHHHHHHHC---CHHHHHHHHHHHHHHHTCCSH
T ss_pred ccccCHHHHHHHHhcCcccchHHhhhhheEEEE----eccchhhHHHHHHHhccccCCCCcccccchHHHHHHHHhcccc
Confidence 567789999999999876655555555555322 3334222 221 146665554445566777766654
Q ss_pred cc
Q 024147 74 AG 75 (272)
Q Consensus 74 ~G 75 (272)
-|
T Consensus 117 hg 118 (165)
T 2z16_A 117 HG 118 (165)
T ss_dssp HH
T ss_pred cc
Confidence 33
No 6
>1rkl_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 4 kDa subunit; membrane protein; NMR {Synthetic} SCOP: f.23.30.1
Probab=8.47 E-value=2.5e+02 Score=17.76 Aligned_cols=21 Identities=14% Similarity=0.410 Sum_probs=13.4
Q ss_pred hhhHHHHHHHHHHHHHHHHhhcc
Q 024147 22 IKIFLAVITAIAALVFLRMVVED 44 (272)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~d 44 (272)
..+.+|.+.. +++++||+.+-
T Consensus 10 lan~lG~~~~--~LIvlYH~v~~ 30 (36)
T 1rkl_A 10 LAITFGIVMM--TLIVIYHAVDS 30 (36)
T ss_dssp HHHHHHHHHH--HHHHHHHHHTS
T ss_pred HHHHHHHHHH--HHHHHHHHHhc
Confidence 3455665544 45889998764
No 7
>2k37_A Chlorosome protein A; bacteriochlorophyll, chlorophyll, chromophore, electron transport, magnesium, metal-binding, photosynthesis, transport; NMR {Chlorobium tepidum}
Probab=8.36 E-value=1.2e+02 Score=21.25 Aligned_cols=11 Identities=0% Similarity=0.124 Sum_probs=9.9
Q ss_pred HHHHHHHHHhh
Q 024147 166 WAFCVYLEAVS 176 (272)
Q Consensus 166 WtFSiyLEsVA 176 (272)
|++|.++|+++
T Consensus 27 ~~vg~~le~~g 37 (59)
T 2k37_A 27 ETVGMLFDSLG 37 (59)
T ss_dssp HHHHHHTGGGT
T ss_pred HHHHHHHHHHH
Confidence 78999999986
No 8
>2lat_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4; membrane protein, oligosaccharyltransferase, integral membra protein; NMR {Homo sapiens}
Probab=8.12 E-value=3.2e+02 Score=17.34 Aligned_cols=19 Identities=32% Similarity=0.184 Sum_probs=12.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhc
Q 024147 23 KIFLAVITAIAALVFLRMVVE 43 (272)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~ 43 (272)
.+.+|.+. ++++++||+.+
T Consensus 11 an~lG~~~--~~LIVlYH~v~ 29 (37)
T 2lat_A 11 ANMLGVSL--FLLVVLYHYVA 29 (37)
T ss_dssp HHHHHHHH--HHHHHHHHHHH
T ss_pred HHHHHHHH--HHHHHHHHHHh
Confidence 44556554 44588999865
No 9
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 3omi_B* 3om3_B* 3oma_B* 3omn_B* 1m56_B* 1m57_B*
Probab=7.87 E-value=2.6e+02 Score=24.62 Aligned_cols=15 Identities=13% Similarity=0.315 Sum_probs=8.8
Q ss_pred hhhhHHHHHHHHhCC
Q 024147 140 YVLIPCAVLSFLIHP 154 (272)
Q Consensus 140 ~liiP~~vLa~i~~p 154 (272)
+.++|+++|.++.-|
T Consensus 79 WTiiP~iILi~la~p 93 (262)
T 2gsm_B 79 WTIVPIVILVAIGAF 93 (262)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHH
Confidence 556666666655433
No 10
>3iz6_Q 40S ribosomal protein S17 (S17E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=7.15 E-value=1.8e+02 Score=23.79 Aligned_cols=27 Identities=30% Similarity=0.314 Sum_probs=19.9
Q ss_pred HHHhhHHHHHHHHHHHHHhhccccccccccchhH
Q 024147 49 FVVAEAVHAIGISVLIYKLTKERTCAGLSLKSQE 82 (272)
Q Consensus 49 ~llgdl~hl~s~~iLl~KI~~~kS~~GiSlKTQ~ 82 (272)
+++|...|+ .|-...-.+.|||+|.|+
T Consensus 49 kIAGYVThl-------mKriq~GpvrgisiklqE 75 (141)
T 3iz6_Q 49 KVAGFTTHL-------MRRIQRGPVRGISLKLQE 75 (141)
T ss_dssp HHHHHHHHH-------HHHHCSCCCCCSSCCSSC
T ss_pred hhhheeeeh-------hhccccCCccccceehhH
Confidence 467777775 344555678999999998
Done!