Query 024147
Match_columns 272
No_of_seqs 117 out of 376
Neff 5.4
Searched_HMMs 13730
Date Mon Mar 25 03:12:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024147.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024147hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v54b2 f.17.2.1 (B:1-90) Mito 29.2 25 0.0018 24.5 3.7 32 124-155 49-80 (90)
2 d3ehbb2 f.17.2.1 (B:1-107) Bac 15.7 1.7E+02 0.013 20.2 6.3 14 140-153 81-94 (107)
3 d1fftb2 f.17.2.1 (B:27-117) Cy 13.2 24 0.0018 24.4 0.6 13 140-152 66-78 (91)
4 d3dtub2 f.17.2.1 (B:30-129) Ba 12.0 88 0.0064 21.5 3.4 16 139-154 74-89 (100)
5 d1aa7a_ a.95.1.1 (A:) Influenz 11.2 1.5E+02 0.011 22.3 4.7 68 2-73 33-109 (158)
6 d2ckca1 d.76.2.1 (A:2563-2622) 8.6 1.1E+02 0.0078 19.9 2.6 19 2-20 20-38 (60)
7 d2fm9a1 a.257.1.1 (A:49-263) C 6.7 62 0.0045 26.0 0.6 11 172-182 196-206 (215)
8 d2ckaa1 d.76.2.1 (A:2028-2085) 6.3 1.6E+02 0.012 18.8 2.6 19 2-20 22-40 (58)
9 d2exna1 b.165.1.1 (A:1-128) Hy 6.3 52 0.0038 23.8 -0.0 14 67-80 6-19 (128)
10 d1vf5c3 f.23.23.1 (C:250-286) 4.0 1.3E+02 0.0098 17.6 0.8 16 18-33 2-17 (37)
No 1
>d1v54b2 f.17.2.1 (B:1-90) Mitochondrial cytochrome c oxidase, subunit II {Cow (Bos taurus) [TaxId: 9913]}
Probab=29.16 E-value=25 Score=24.46 Aligned_cols=32 Identities=22% Similarity=0.431 Sum_probs=17.8
Q ss_pred ccccccccccccchhhhhhhHHHHHHHHhCCC
Q 024147 124 KLRASYMDDKDNFAIYYVLIPCAVLSFLIHPS 155 (272)
Q Consensus 124 kyk~TY~~~~Dtf~~~~liiP~~vLa~i~~p~ 155 (272)
++++.+-.+..+.-....++|+++|..+--|+
T Consensus 49 ~~~~~~~~~~~~lEiiWTiiP~lILi~ia~PS 80 (90)
T d1v54b2 49 KLTHTSTMDAQEVETIWTILPAIILILIALPS 80 (90)
T ss_dssp SCCCCSCCCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHHH
Confidence 44433333333444456677877777766554
No 2
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=15.69 E-value=1.7e+02 Score=20.21 Aligned_cols=14 Identities=21% Similarity=0.451 Sum_probs=7.0
Q ss_pred hhhhHHHHHHHHhC
Q 024147 140 YVLIPCAVLSFLIH 153 (272)
Q Consensus 140 ~liiP~~vLa~i~~ 153 (272)
..++|+++|..+.-
T Consensus 81 WTviP~lIL~~lai 94 (107)
T d3ehbb2 81 WTLVPVLILVAIGA 94 (107)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44555555554443
No 3
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=13.25 E-value=24 Score=24.45 Aligned_cols=13 Identities=23% Similarity=0.455 Sum_probs=7.3
Q ss_pred hhhhHHHHHHHHh
Q 024147 140 YVLIPCAVLSFLI 152 (272)
Q Consensus 140 ~liiP~~vLa~i~ 152 (272)
..++|++++..+.
T Consensus 66 WtiIP~iil~~ia 78 (91)
T d1fftb2 66 VWTVPILIIIFLA 78 (91)
T ss_dssp TTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4456666655543
No 4
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=11.98 E-value=88 Score=21.51 Aligned_cols=16 Identities=13% Similarity=0.249 Sum_probs=9.9
Q ss_pred hhhhhHHHHHHHHhCC
Q 024147 139 YYVLIPCAVLSFLIHP 154 (272)
Q Consensus 139 ~~liiP~~vLa~i~~p 154 (272)
...++|+++|..+.-|
T Consensus 74 iWTviP~lILi~l~~p 89 (100)
T d3dtub2 74 AWTIVPIVILVAIGAF 89 (100)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3567777776665544
No 5
>d1aa7a_ a.95.1.1 (A:) Influenza virus matrix protein M1 {Influenza A virus [TaxId: 11320]}
Probab=11.22 E-value=1.5e+02 Score=22.27 Aligned_cols=68 Identities=16% Similarity=0.213 Sum_probs=43.0
Q ss_pred CCCCChHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHhhccChh-----HH----HHhhHHHHHHHHHHHHHhhcccc
Q 024147 2 KGNKTPIHAAATWVRRQPSKIKIFLAVITAIAALVFLRMVVEDHDS-----LF----VVAEAVHAIGISVLIYKLTKERT 72 (272)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-----~~----llgdl~hl~s~~iLl~KI~~~kS 72 (272)
+|++...+.+++|++.++-=.-+-=|.+.+++.+ ..-||... -. =-||=-..---+.|--|++|.-+
T Consensus 33 aGKntDL~~lmEWlKtr~~Ls~ltK~ilG~~~~~----~~Pser~lq~RRFv~naLngngdp~~m~k~v~l~rKlkReit 108 (158)
T d1aa7a_ 33 AGKNTDLEVLMEWLKTRPILSPLTKGILGFVFTL----TVPSERGLQRRRFVQNALNGNGDPNNMDKAVKLYRKLKREIT 108 (158)
T ss_dssp TTCCCCHHHHHHHHHTCSSSCHHHHHHHHHHHHH----HSSCCTTCCCCHHHHHHTSGGGCHHHHHHHHHHHHHHTTCCS
T ss_pred cCcccCHHHHHHHHhcCcccchHHhhhhheEEEE----eccchhhhHHhHhhhccccCCCCchhHHHHHHHHHHHHhHcc
Confidence 4677889999999999876655555555555322 45566542 11 14776666666667777776654
Q ss_pred c
Q 024147 73 C 73 (272)
Q Consensus 73 ~ 73 (272)
-
T Consensus 109 F 109 (158)
T d1aa7a_ 109 F 109 (158)
T ss_dssp H
T ss_pred c
Confidence 3
No 6
>d2ckca1 d.76.2.1 (A:2563-2622) Chromodomain-helicase-DNA-binding protein 7, CHD7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.65 E-value=1.1e+02 Score=19.86 Aligned_cols=19 Identities=11% Similarity=0.396 Sum_probs=14.5
Q ss_pred CCCCChHHHHHHHHHhCCC
Q 024147 2 KGNKTPIHAAATWVRRQPS 20 (272)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~ 20 (272)
|..-+.+..+..||++|++
T Consensus 20 G~~AP~~~~L~~WL~~hP~ 38 (60)
T d2ckca1 20 GEDAPKNKDLVEWLKLHPT 38 (60)
T ss_dssp TTSSCBHHHHHHHHHHCTT
T ss_pred CcCCcCHHHHHHHHHHCCC
Confidence 4445667779999999986
No 7
>d2fm9a1 a.257.1.1 (A:49-263) Cell invasion protein SipA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=6.66 E-value=62 Score=25.99 Aligned_cols=11 Identities=36% Similarity=0.604 Sum_probs=9.8
Q ss_pred HHHhhhhhHHH
Q 024147 172 LEAVSVLPQLQ 182 (272)
Q Consensus 172 LEsVAILPQL~ 182 (272)
||.+|++|||.
T Consensus 196 L~~~av~P~LL 206 (215)
T d2fm9a1 196 LEMQTLIPLLL 206 (215)
T ss_dssp CHHHHHHHHHH
T ss_pred hhHHHHHHHHH
Confidence 78999999985
No 8
>d2ckaa1 d.76.2.1 (A:2028-2085) Chromodomain-helicase-dna-binding protein 8, CHD8 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.34 E-value=1.6e+02 Score=18.81 Aligned_cols=19 Identities=11% Similarity=0.345 Sum_probs=14.6
Q ss_pred CCCCChHHHHHHHHHhCCC
Q 024147 2 KGNKTPIHAAATWVRRQPS 20 (272)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~ 20 (272)
|..-+.+..+..||.+|++
T Consensus 22 G~~AP~~~~L~~WL~~nP~ 40 (58)
T d2ckaa1 22 GEDAPRRAELEMWLQGHPE 40 (58)
T ss_dssp TTSSCBHHHHHHHHHHCTT
T ss_pred ccCCcCHHHHHHHHHHCCC
Confidence 4445667778999999986
No 9
>d2exna1 b.165.1.1 (A:1-128) Hypothetical protein BB0938 {Bordetella bronchiseptica [TaxId: 518]}
Probab=6.30 E-value=52 Score=23.85 Aligned_cols=14 Identities=7% Similarity=0.178 Sum_probs=10.7
Q ss_pred hhccccccccccch
Q 024147 67 LTKERTCAGLSLKS 80 (272)
Q Consensus 67 I~~~kS~~GiSlKT 80 (272)
+|-=|||.|+|+..
T Consensus 6 ~~PIKsc~g~~~~~ 19 (128)
T d2exna1 6 YQPIAECGATTQSE 19 (128)
T ss_dssp EEEETTTEEECCGG
T ss_pred eecccccCCccccc
Confidence 34559999999854
No 10
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=3.99 E-value=1.3e+02 Score=17.63 Aligned_cols=16 Identities=25% Similarity=0.588 Sum_probs=10.3
Q ss_pred CCCchhhHHHHHHHHH
Q 024147 18 QPSKIKIFLAVITAIA 33 (272)
Q Consensus 18 ~~~~~~~~~~~~~~~~ 33 (272)
++.+++..+.|+.+++
T Consensus 2 ~p~Rv~gl~~F~~~v~ 17 (37)
T d1vf5c3 2 DPNRVKWMIAFICLVM 17 (37)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHH
Confidence 4556677777776664
Done!