BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024148
         (272 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2G9B|A Chain A, Nmr Solution Structure Of Ca2+-Loaded Calbindin D28k
 pdb|2F33|A Chain A, Nmr Solution Structure Of Ca2+-Loaded Calbindin D28k
          Length = 263

 Score = 28.1 bits (61), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 9/48 (18%)

Query: 21  VPAREIDPLLKDLNEKKQ---------SFRKNVVSLAAELKEVRTRLA 59
           +   E+D LLKDL EK +         +++KN+++L+   K  RT LA
Sbjct: 208 IDENELDALLKDLCEKNKQELDINNISTYKKNIMALSDGGKLYRTDLA 255


>pdb|2I1J|A Chain A, Moesin From Spodoptera Frugiperda At 2.1 Angstroms
           Resolution
 pdb|2I1K|A Chain A, Moesin From Spodoptera Frugiperda Reveals The Coiled-Coil
           Domain At 3.0 Angstrom Resolution
          Length = 575

 Score = 28.1 bits (61), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 10/101 (9%)

Query: 148 ELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGV 207
           E++   ++L E +D + RL +QL  LQ   +  E  Q +L        Q +MQ + +   
Sbjct: 350 EMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNEL--------QAMMQRLEETKN 401

Query: 208 NKDCELRKLLDEVSPKNFE--RINKLLVVKDEEIHKLKDEI 246
            +  E +KL DE+  K  E  RI + + +KD E  +L++E+
Sbjct: 402 MEAAERQKLEDEIRAKQEEVSRIQQEVELKDSETRRLQEEV 442


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.312    0.128    0.336 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,594,021
Number of Sequences: 62578
Number of extensions: 183771
Number of successful extensions: 723
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 662
Number of HSP's gapped (non-prelim): 77
length of query: 272
length of database: 14,973,337
effective HSP length: 97
effective length of query: 175
effective length of database: 8,903,271
effective search space: 1558072425
effective search space used: 1558072425
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)