Query 024148
Match_columns 272
No_of_seqs 21 out of 23
Neff 2.1
Searched_HMMs 46136
Date Fri Mar 29 02:26:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024148.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024148hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0161 Myosin class II heavy 97.6 0.0067 1.4E-07 67.8 21.0 194 42-265 1090-1283(1930)
2 PRK02224 chromosome segregatio 97.4 0.097 2.1E-06 52.1 23.0 132 21-160 461-592 (880)
3 TIGR02168 SMC_prok_B chromosom 97.2 0.28 6.1E-06 48.4 24.1 29 30-58 679-707 (1179)
4 TIGR02168 SMC_prok_B chromosom 96.8 0.62 1.3E-05 46.1 22.9 70 26-95 682-751 (1179)
5 COG1196 Smc Chromosome segrega 96.8 0.56 1.2E-05 49.5 23.3 14 252-265 946-959 (1163)
6 KOG0977 Nuclear envelope prote 96.6 0.41 9E-06 48.4 20.0 127 17-153 85-217 (546)
7 PF09738 DUF2051: Double stran 96.0 0.053 1.1E-06 50.6 9.8 87 23-123 79-165 (302)
8 PF00038 Filament: Intermediat 95.8 1.3 2.8E-05 39.0 21.8 76 29-104 62-151 (312)
9 COG1196 Smc Chromosome segrega 95.2 5.2 0.00011 42.5 24.0 60 28-87 667-726 (1163)
10 PRK02224 chromosome segregatio 95.0 4.4 9.4E-05 40.7 20.4 18 46-63 255-272 (880)
11 TIGR00606 rad50 rad50. This fa 94.7 7.4 0.00016 41.9 22.0 86 39-124 748-841 (1311)
12 TIGR00606 rad50 rad50. This fa 94.7 7.4 0.00016 41.8 22.6 51 72-122 883-933 (1311)
13 PRK04778 septation ring format 93.6 8.2 0.00018 38.0 19.7 183 55-247 288-493 (569)
14 PF09726 Macoilin: Transmembra 93.3 7.3 0.00016 40.3 17.5 72 36-107 482-575 (697)
15 PF05335 DUF745: Protein of un 92.5 2.7 5.8E-05 37.2 11.5 93 80-179 70-169 (188)
16 PRK04778 septation ring format 92.5 12 0.00026 36.9 18.6 200 45-246 252-464 (569)
17 KOG0612 Rho-associated, coiled 91.9 25 0.00055 39.4 20.4 195 47-266 466-685 (1317)
18 smart00787 Spc7 Spc7 kinetocho 91.7 3.6 7.7E-05 38.5 12.0 16 163-178 273-288 (312)
19 PRK09039 hypothetical protein; 91.5 12 0.00027 35.0 16.7 30 147-176 123-152 (343)
20 PF07888 CALCOCO1: Calcium bin 91.5 18 0.0004 37.0 18.9 74 91-164 262-356 (546)
21 PF00038 Filament: Intermediat 91.0 10 0.00023 33.4 17.0 136 30-178 6-141 (312)
22 PF15294 Leu_zip: Leucine zipp 90.5 4.1 9E-05 38.3 11.1 74 171-247 204-277 (278)
23 TIGR03185 DNA_S_dndD DNA sulfu 89.9 22 0.00049 35.3 17.1 94 26-127 184-277 (650)
24 TIGR03185 DNA_S_dndD DNA sulfu 89.7 23 0.0005 35.2 19.6 99 24-125 212-313 (650)
25 PF01576 Myosin_tail_1: Myosin 89.4 0.11 2.4E-06 53.7 0.0 143 43-207 33-176 (859)
26 PF05701 WEMBL: Weak chloropla 89.3 24 0.00052 34.8 20.2 17 163-179 339-355 (522)
27 PF06160 EzrA: Septation ring 89.0 25 0.00055 34.8 19.6 212 25-249 249-491 (560)
28 PF01576 Myosin_tail_1: Myosin 88.9 0.12 2.6E-06 53.3 0.0 113 65-177 168-280 (859)
29 KOG4674 Uncharacterized conser 88.7 35 0.00075 39.5 18.3 177 25-201 902-1100(1822)
30 PRK04863 mukB cell division pr 88.5 49 0.0011 37.3 22.0 76 185-269 452-534 (1486)
31 PRK11637 AmiB activator; Provi 87.8 25 0.00054 33.2 21.4 56 46-101 72-127 (428)
32 PF09787 Golgin_A5: Golgin sub 87.7 29 0.00064 33.9 20.0 95 39-133 113-235 (511)
33 PF08614 ATG16: Autophagy prot 87.6 2 4.3E-05 36.6 6.4 97 13-123 59-162 (194)
34 PF04156 IncA: IncA protein; 86.5 17 0.00037 30.0 12.8 72 47-118 79-150 (191)
35 PF03915 AIP3: Actin interacti 86.0 3.1 6.8E-05 40.8 7.6 185 31-254 74-277 (424)
36 PRK04863 mukB cell division pr 84.5 44 0.00096 37.6 16.2 13 221-233 549-561 (1486)
37 PF09755 DUF2046: Uncharacteri 84.4 40 0.00087 32.5 18.2 156 14-175 13-192 (310)
38 KOG0161 Myosin class II heavy 83.2 71 0.0015 37.3 17.3 148 28-179 1639-1786(1930)
39 KOG0996 Structural maintenance 82.7 91 0.002 35.3 21.9 233 35-268 334-583 (1293)
40 COG1579 Zn-ribbon protein, pos 82.5 15 0.00034 33.8 10.1 66 139-204 5-74 (239)
41 KOG4674 Uncharacterized conser 81.3 1.2E+02 0.0025 35.6 22.6 213 42-265 766-1000(1822)
42 PF05667 DUF812: Protein of un 80.7 72 0.0016 32.7 16.4 36 162-197 448-483 (594)
43 PF00261 Tropomyosin: Tropomyo 80.4 40 0.00087 29.6 18.2 52 112-163 113-164 (237)
44 PF08317 Spc7: Spc7 kinetochor 79.7 51 0.0011 30.4 15.4 16 112-127 209-224 (325)
45 PF12128 DUF3584: Protein of u 79.0 1E+02 0.0022 33.4 23.0 88 159-265 769-858 (1201)
46 KOG0946 ER-Golgi vesicle-tethe 78.3 56 0.0012 35.7 13.7 136 26-179 690-831 (970)
47 PF06818 Fez1: Fez1; InterPro 78.0 22 0.00047 32.3 9.3 117 43-178 32-148 (202)
48 PF04156 IncA: IncA protein; 77.1 40 0.00086 27.9 10.1 68 22-90 82-150 (191)
49 PF10174 Cast: RIM-binding pro 76.8 1.1E+02 0.0024 32.6 17.6 160 30-189 233-420 (775)
50 PF08317 Spc7: Spc7 kinetochor 76.8 62 0.0014 29.8 14.3 141 90-255 151-296 (325)
51 PF12718 Tropomyosin_1: Tropom 76.2 45 0.00098 27.9 14.1 63 75-137 12-74 (143)
52 KOG0250 DNA repair protein RAD 76.1 1.4E+02 0.0029 33.4 19.9 45 152-196 370-415 (1074)
53 PHA02562 46 endonuclease subun 75.2 76 0.0016 30.1 16.1 26 29-54 256-281 (562)
54 KOG0971 Microtubule-associated 75.2 45 0.00097 37.0 12.2 115 85-215 397-511 (1243)
55 PF12128 DUF3584: Protein of u 74.6 1.3E+02 0.0029 32.6 17.1 96 103-198 460-556 (1201)
56 PF10174 Cast: RIM-binding pro 73.7 1.3E+02 0.0028 32.1 19.7 25 225-249 226-257 (775)
57 smart00806 AIP3 Actin interact 72.5 1.1E+02 0.0024 30.7 15.2 199 32-266 75-290 (426)
58 PRK03918 chromosome segregatio 72.2 1.1E+02 0.0025 30.7 19.4 18 156-173 682-699 (880)
59 PRK09841 cryptic autophosphory 71.1 1.3E+02 0.0027 30.8 14.5 62 64-125 252-324 (726)
60 TIGR03007 pepcterm_ChnLen poly 69.9 94 0.002 29.4 11.8 24 156-179 270-293 (498)
61 PF10168 Nup88: Nuclear pore c 68.8 1.6E+02 0.0034 30.9 16.6 134 107-252 574-714 (717)
62 TIGR01843 type_I_hlyD type I s 68.6 88 0.0019 28.0 17.8 26 32-57 78-103 (423)
63 PF10168 Nup88: Nuclear pore c 68.4 91 0.002 32.6 12.3 88 38-129 561-656 (717)
64 COG1579 Zn-ribbon protein, pos 68.1 1E+02 0.0022 28.5 16.0 36 210-245 162-198 (239)
65 PF06818 Fez1: Fez1; InterPro 68.0 87 0.0019 28.5 10.7 59 108-173 27-85 (202)
66 PF13863 DUF4200: Domain of un 65.7 62 0.0013 25.1 9.1 63 32-94 36-98 (126)
67 PRK03918 chromosome segregatio 64.2 1.7E+02 0.0036 29.6 24.0 9 239-247 407-415 (880)
68 PRK11637 AmiB activator; Provi 64.0 1.3E+02 0.0029 28.4 21.3 31 32-62 44-74 (428)
69 PF08826 DMPK_coil: DMPK coile 63.9 30 0.00064 26.1 5.9 26 70-95 31-57 (61)
70 PF09730 BicD: Microtubule-ass 63.5 1.8E+02 0.004 30.9 13.4 74 19-96 344-417 (717)
71 cd07591 BAR_Rvs161p The Bin/Am 62.8 71 0.0015 28.3 9.1 100 73-183 14-121 (224)
72 PF07106 TBPIP: Tat binding pr 62.6 65 0.0014 26.7 8.3 61 23-95 74-134 (169)
73 PF10267 Tmemb_cc2: Predicted 60.8 1.4E+02 0.0031 29.4 11.5 119 25-178 209-327 (395)
74 PF15272 BBP1_C: Spindle pole 60.8 37 0.0008 30.7 7.0 19 253-271 137-155 (196)
75 KOG0250 DNA repair protein RAD 60.4 2.9E+02 0.0062 31.0 21.1 33 145-177 356-388 (1074)
76 PF12325 TMF_TATA_bd: TATA ele 60.3 99 0.0021 25.7 9.5 68 23-94 18-85 (120)
77 KOG0933 Structural maintenance 59.3 2.8E+02 0.0062 31.3 14.3 164 82-266 682-854 (1174)
78 PRK10929 putative mechanosensi 58.2 3E+02 0.0066 30.6 14.9 86 38-123 68-162 (1109)
79 PF06657 Cep57_MT_bd: Centroso 57.6 36 0.00077 26.2 5.6 69 18-102 7-75 (79)
80 PF06705 SF-assemblin: SF-asse 57.5 1.4E+02 0.0029 26.4 19.5 198 49-250 5-217 (247)
81 KOG0243 Kinesin-like protein [ 57.2 3.2E+02 0.0069 30.6 18.0 117 27-165 403-522 (1041)
82 PF04799 Fzo_mitofusin: fzo-li 56.2 43 0.00094 29.8 6.5 25 73-97 116-140 (171)
83 PF05529 Bap31: B-cell recepto 55.7 78 0.0017 26.7 7.8 56 45-100 121-177 (192)
84 PF08614 ATG16: Autophagy prot 55.6 62 0.0014 27.6 7.3 69 81-149 99-167 (194)
85 TIGR03752 conj_TIGR03752 integ 55.3 56 0.0012 33.2 7.9 69 38-120 55-124 (472)
86 TIGR03007 pepcterm_ChnLen poly 54.8 1.9E+02 0.0042 27.3 12.8 20 81-100 258-277 (498)
87 COG3883 Uncharacterized protei 54.8 1.9E+02 0.0042 27.3 14.2 151 16-178 19-182 (265)
88 PF14282 FlxA: FlxA-like prote 54.5 53 0.0012 26.1 6.3 34 15-48 6-39 (106)
89 PF00261 Tropomyosin: Tropomyo 54.5 1.5E+02 0.0033 26.1 16.0 23 158-180 194-216 (237)
90 PF01442 Apolipoprotein: Apoli 53.8 1E+02 0.0022 23.9 14.2 21 246-266 168-188 (202)
91 KOG0933 Structural maintenance 53.2 3.9E+02 0.0084 30.3 22.1 178 80-270 744-939 (1174)
92 TIGR01005 eps_transp_fam exopo 53.2 2.6E+02 0.0056 28.3 14.1 33 33-65 185-217 (754)
93 PF05266 DUF724: Protein of un 53.1 1.6E+02 0.0035 26.0 11.5 53 72-124 126-185 (190)
94 PF13863 DUF4200: Domain of un 52.5 1.1E+02 0.0023 23.8 12.4 87 80-176 24-110 (126)
95 COG0419 SbcC ATPase involved i 51.9 3E+02 0.0066 28.7 22.2 57 145-201 387-443 (908)
96 KOG0288 WD40 repeat protein Ti 51.7 96 0.0021 31.6 8.8 64 48-112 12-82 (459)
97 KOG4643 Uncharacterized coiled 51.6 1.1E+02 0.0023 34.4 9.8 75 45-123 173-247 (1195)
98 PF05701 WEMBL: Weak chloropla 50.5 2.7E+02 0.0058 27.7 20.6 64 185-249 340-405 (522)
99 PF13094 CENP-Q: CENP-Q, a CEN 50.5 1.4E+02 0.0031 24.5 9.8 70 24-93 16-85 (160)
100 PRK09039 hypothetical protein; 49.8 2.3E+02 0.005 26.8 17.1 6 186-191 194-199 (343)
101 PF04871 Uso1_p115_C: Uso1 / p 49.8 1.5E+02 0.0033 24.7 10.9 35 133-170 80-114 (136)
102 PF05911 DUF869: Plant protein 48.8 3.7E+02 0.008 28.8 14.7 101 74-181 593-693 (769)
103 PTZ00491 major vault protein; 48.8 4E+02 0.0087 29.2 13.8 43 186-228 789-839 (850)
104 PRK10246 exonuclease subunit S 48.6 3.8E+02 0.0082 28.9 27.0 76 167-244 723-798 (1047)
105 PRK11519 tyrosine kinase; Prov 48.1 3.2E+02 0.0069 27.9 13.6 49 75-123 265-322 (719)
106 PF13166 AAA_13: AAA domain 48.1 2.8E+02 0.0062 27.3 12.6 89 29-117 371-471 (712)
107 PF12718 Tropomyosin_1: Tropom 48.1 1.7E+02 0.0036 24.6 10.3 82 30-116 37-119 (143)
108 PF05791 Bacillus_HBL: Bacillu 47.6 1.5E+02 0.0032 25.4 8.3 71 29-102 111-181 (184)
109 PRK10884 SH3 domain-containing 47.4 2.1E+02 0.0045 25.6 9.7 29 39-67 90-118 (206)
110 TIGR03319 YmdA_YtgF conserved 46.3 2.3E+02 0.0049 28.4 10.4 16 83-98 75-90 (514)
111 PTZ00446 vacuolar sorting prot 46.1 88 0.0019 28.0 6.9 59 158-232 78-136 (191)
112 PF10158 LOH1CR12: Tumour supp 44.8 1.9E+02 0.0041 24.3 10.1 78 42-129 27-104 (131)
113 PF06419 COG6: Conserved oligo 43.8 1.6E+02 0.0036 29.8 9.2 68 55-125 26-93 (618)
114 KOG0994 Extracellular matrix g 43.5 6E+02 0.013 29.8 16.3 21 75-95 1610-1630(1758)
115 TIGR02680 conserved hypothetic 42.6 5.3E+02 0.011 28.8 15.4 52 111-162 332-383 (1353)
116 PF03148 Tektin: Tektin family 42.3 3.1E+02 0.0068 26.1 12.1 23 79-101 274-296 (384)
117 PRK10803 tol-pal system protei 40.8 53 0.0012 29.7 4.8 67 55-121 39-105 (263)
118 KOG0980 Actin-binding protein 40.3 5.7E+02 0.012 28.6 17.6 167 33-209 429-600 (980)
119 PRK10884 SH3 domain-containing 39.9 2.8E+02 0.006 24.8 9.3 25 75-99 91-115 (206)
120 cd08784 Death_DRs Death Domain 39.1 25 0.00055 26.4 2.2 45 213-257 2-53 (79)
121 PHA02562 46 endonuclease subun 38.8 3.5E+02 0.0076 25.7 19.4 18 78-95 228-245 (562)
122 PF12761 End3: Actin cytoskele 37.8 1.4E+02 0.003 27.2 6.9 34 155-188 161-194 (195)
123 PF07888 CALCOCO1: Calcium bin 37.7 4.9E+02 0.011 27.1 19.6 20 235-254 369-388 (546)
124 PF10473 CENP-F_leu_zip: Leuci 37.3 2.7E+02 0.0058 23.9 14.4 127 30-174 12-139 (140)
125 PF10498 IFT57: Intra-flagella 37.3 3.9E+02 0.0085 25.8 14.3 130 52-206 216-352 (359)
126 TIGR01843 type_I_hlyD type I s 37.3 3.1E+02 0.0066 24.6 16.6 11 233-243 315-325 (423)
127 KOG4809 Rab6 GTPase-interactin 36.7 1.5E+02 0.0033 31.3 7.8 77 106-203 332-408 (654)
128 PF05622 HOOK: HOOK protein; 36.6 12 0.00025 37.9 0.0 45 71-119 261-305 (713)
129 KOG0612 Rho-associated, coiled 36.4 7.3E+02 0.016 28.7 21.4 27 214-240 730-756 (1317)
130 PF05557 MAD: Mitotic checkpoi 36.2 12 0.00026 37.8 0.0 36 25-60 69-104 (722)
131 PF09738 DUF2051: Double stran 36.1 3.9E+02 0.0084 25.4 11.6 71 80-164 108-178 (302)
132 KOG0239 Kinesin (KAR3 subfamil 36.1 4E+02 0.0086 28.0 10.7 129 108-246 178-309 (670)
133 PF12522 UL73_N: Cytomegalovir 35.3 25 0.00053 23.5 1.4 14 4-17 13-26 (27)
134 PF12325 TMF_TATA_bd: TATA ele 35.2 1.8E+02 0.0038 24.2 6.7 86 162-250 24-109 (120)
135 KOG4673 Transcription factor T 34.8 6.7E+02 0.014 27.8 13.8 55 139-193 469-527 (961)
136 PF00769 ERM: Ezrin/radixin/mo 34.7 3.5E+02 0.0075 24.5 14.9 53 159-218 174-233 (246)
137 PF02841 GBP_C: Guanylate-bind 34.5 2.7E+02 0.0059 25.2 8.3 62 29-90 230-297 (297)
138 TIGR02977 phageshock_pspA phag 34.2 3.2E+02 0.0069 23.9 12.4 107 25-139 28-147 (219)
139 PF05529 Bap31: B-cell recepto 34.1 1.8E+02 0.0039 24.6 6.7 23 109-131 122-144 (192)
140 PF03962 Mnd1: Mnd1 family; I 33.7 3.2E+02 0.007 23.8 10.0 103 37-144 64-167 (188)
141 COG4477 EzrA Negative regulato 33.6 6E+02 0.013 26.8 20.1 209 25-247 252-492 (570)
142 PF10186 Atg14: UV radiation r 33.5 3.1E+02 0.0067 23.5 14.5 19 111-129 90-108 (302)
143 PF06120 Phage_HK97_TLTM: Tail 33.2 4.4E+02 0.0096 25.2 10.8 51 75-125 93-147 (301)
144 PRK00409 recombination and DNA 33.0 4.9E+02 0.011 27.4 10.8 17 25-41 517-533 (782)
145 COG3206 GumC Uncharacterized p 32.3 4.5E+02 0.0097 25.0 12.1 29 34-62 187-215 (458)
146 PF14197 Cep57_CLD_2: Centroso 32.3 2.2E+02 0.0049 21.5 7.9 50 75-124 17-66 (69)
147 TIGR03017 EpsF chain length de 32.2 4.2E+02 0.009 24.6 10.7 110 70-179 164-300 (444)
148 PF09726 Macoilin: Transmembra 31.9 6.3E+02 0.014 26.6 17.2 89 160-249 544-655 (697)
149 PF05557 MAD: Mitotic checkpoi 31.8 15 0.00033 37.0 0.0 32 156-187 187-218 (722)
150 PF15397 DUF4618: Domain of un 31.8 4.5E+02 0.0096 24.8 15.2 93 81-176 31-135 (258)
151 PF07926 TPR_MLP1_2: TPR/MLP1/ 31.7 2.8E+02 0.0061 22.5 14.5 23 156-178 107-129 (132)
152 TIGR02132 phaR_Bmeg polyhydrox 31.6 75 0.0016 29.0 4.2 43 158-200 83-125 (189)
153 TIGR00634 recN DNA repair prot 31.4 4.8E+02 0.01 25.8 10.0 112 30-145 282-393 (563)
154 PF05667 DUF812: Protein of un 31.3 6.1E+02 0.013 26.3 17.6 149 30-185 330-492 (594)
155 COG0419 SbcC ATPase involved i 31.2 6.4E+02 0.014 26.5 20.8 24 78-101 590-613 (908)
156 PF10267 Tmemb_cc2: Predicted 31.0 4.1E+02 0.0088 26.4 9.4 40 153-195 250-289 (395)
157 PF04799 Fzo_mitofusin: fzo-li 31.0 38 0.00083 30.1 2.3 30 237-266 127-162 (171)
158 PF09969 DUF2203: Uncharacteri 30.7 1.9E+02 0.0042 23.8 6.2 33 26-58 11-43 (120)
159 PF08990 Docking: Erythronolid 30.3 78 0.0017 20.7 3.1 20 40-59 7-26 (27)
160 PF08581 Tup_N: Tup N-terminal 29.9 2.7E+02 0.0059 21.8 6.9 52 38-99 28-79 (79)
161 COG0064 GatB Asp-tRNAAsn/Glu-t 29.9 2.6E+02 0.0057 28.6 8.1 106 127-236 337-449 (483)
162 PF06008 Laminin_I: Laminin Do 29.9 4E+02 0.0086 23.6 14.8 23 78-100 88-110 (264)
163 PF08657 DASH_Spc34: DASH comp 29.4 2.5E+02 0.0055 26.0 7.4 39 32-70 177-215 (259)
164 PF15483 DUF4641: Domain of un 28.9 44 0.00094 33.8 2.5 21 110-130 423-443 (445)
165 PF07798 DUF1640: Protein of u 28.8 2E+02 0.0044 24.3 6.2 12 236-247 137-148 (177)
166 PRK09841 cryptic autophosphory 28.3 6.7E+02 0.014 25.8 11.8 36 31-66 256-291 (726)
167 PF07106 TBPIP: Tat binding pr 27.8 3.5E+02 0.0077 22.4 8.8 22 110-131 98-119 (169)
168 PRK05658 RNA polymerase sigma 27.4 6.6E+02 0.014 25.4 12.1 61 188-250 284-354 (619)
169 PF07889 DUF1664: Protein of u 27.2 2.4E+02 0.0052 23.8 6.3 57 141-200 44-100 (126)
170 PF04740 LXG: LXG domain of WX 27.2 3.7E+02 0.0079 22.4 7.6 43 79-121 140-182 (204)
171 COG4026 Uncharacterized protei 26.6 3E+02 0.0066 26.5 7.4 57 36-99 150-206 (290)
172 PF13870 DUF4201: Domain of un 26.3 3.9E+02 0.0084 22.3 13.6 77 41-123 12-88 (177)
173 PF04111 APG6: Autophagy prote 26.2 5.5E+02 0.012 24.1 9.9 106 63-175 29-134 (314)
174 PF05483 SCP-1: Synaptonemal c 26.0 9E+02 0.019 26.5 18.9 159 90-262 449-612 (786)
175 PRK01156 chromosome segregatio 25.7 7.5E+02 0.016 25.5 19.2 215 30-256 582-809 (895)
176 TIGR01005 eps_transp_fam exopo 25.7 7.1E+02 0.015 25.2 12.5 70 24-93 284-368 (754)
177 PF03938 OmpH: Outer membrane 25.5 3.5E+02 0.0075 21.5 6.8 14 18-31 16-29 (158)
178 PRK00888 ftsB cell division pr 25.3 1.8E+02 0.004 23.2 5.0 53 162-214 28-84 (105)
179 PF06428 Sec2p: GDP/GTP exchan 24.9 3.4E+02 0.0074 22.0 6.5 34 65-98 3-37 (100)
180 KOG3976 Mitochondrial F1F0-ATP 24.9 2.1E+02 0.0046 27.1 6.0 29 39-67 180-208 (247)
181 PF09602 PhaP_Bmeg: Polyhydrox 24.6 4.8E+02 0.01 23.4 7.9 54 142-205 24-78 (165)
182 COG2178 Predicted RNA-binding 24.5 2E+02 0.0044 26.5 5.7 65 168-247 3-67 (204)
183 PF12072 DUF3552: Domain of un 24.3 4.7E+02 0.01 22.6 9.4 93 72-165 66-165 (201)
184 PF08100 Dimerisation: Dimeris 24.3 86 0.0019 22.5 2.7 39 194-232 7-47 (51)
185 PF05300 DUF737: Protein of un 24.1 5.3E+02 0.011 23.1 10.0 66 37-102 81-148 (187)
186 PF09755 DUF2046: Uncharacteri 23.9 6.8E+02 0.015 24.4 18.5 47 153-199 127-173 (310)
187 PF10805 DUF2730: Protein of u 23.9 1.7E+02 0.0036 23.4 4.5 40 156-195 44-85 (106)
188 KOG4367 Predicted Zn-finger pr 23.7 3.4E+02 0.0073 28.6 7.6 65 86-156 266-331 (699)
189 PF02050 FliJ: Flagellar FliJ 23.6 2.8E+02 0.0061 19.9 11.9 74 130-203 42-119 (123)
190 PRK14143 heat shock protein Gr 23.6 5.8E+02 0.013 23.5 8.7 26 193-218 103-128 (238)
191 PF06810 Phage_GP20: Phage min 23.6 4.6E+02 0.01 22.3 10.1 29 146-176 103-131 (155)
192 PF14362 DUF4407: Domain of un 23.4 5.4E+02 0.012 23.0 10.8 13 165-177 243-255 (301)
193 TIGR01010 BexC_CtrB_KpsE polys 23.3 5.8E+02 0.013 23.3 14.8 55 71-125 164-227 (362)
194 PF05483 SCP-1: Synaptonemal c 23.1 1E+03 0.022 26.1 18.1 142 32-202 538-688 (786)
195 PF05103 DivIVA: DivIVA protei 22.5 1.1E+02 0.0025 23.6 3.3 98 76-176 24-122 (131)
196 TIGR00831 a_cpa1 Na+/H+ antipo 22.4 6.5E+02 0.014 24.9 9.1 64 156-220 452-516 (525)
197 COG1842 PspA Phage shock prote 22.1 6E+02 0.013 23.1 9.1 53 81-133 96-151 (225)
198 cd07653 F-BAR_CIP4-like The F- 22.0 5.2E+02 0.011 22.3 14.8 53 73-125 101-153 (251)
199 PF13874 Nup54: Nucleoporin co 22.0 4.3E+02 0.0093 21.8 6.7 50 31-82 33-82 (141)
200 PF10805 DUF2730: Protein of u 21.7 4.2E+02 0.009 21.1 7.9 50 48-104 34-85 (106)
201 PF12240 Angiomotin_C: Angiomo 21.6 2.4E+02 0.0053 26.0 5.6 83 161-257 3-87 (205)
202 PF15254 CCDC14: Coiled-coil d 21.6 1.1E+03 0.024 26.1 11.8 53 186-248 491-547 (861)
203 PF00435 Spectrin: Spectrin re 21.5 2.8E+02 0.006 19.0 7.3 83 108-195 4-86 (105)
204 KOG0994 Extracellular matrix g 21.3 1.4E+03 0.03 27.0 20.5 60 30-89 1513-1572(1758)
205 PRK06342 transcription elongat 21.3 1.1E+02 0.0024 26.2 3.3 25 108-132 37-61 (160)
206 KOG0018 Structural maintenance 21.1 1.3E+03 0.028 26.5 11.8 138 49-208 655-800 (1141)
207 PF09789 DUF2353: Uncharacteri 20.8 4.7E+02 0.01 25.3 7.6 48 130-178 269-317 (319)
208 PF03962 Mnd1: Mnd1 family; I 20.8 5.7E+02 0.012 22.3 11.7 20 160-179 148-167 (188)
209 KOG4603 TBP-1 interacting prot 20.7 3.8E+02 0.0082 24.8 6.6 33 27-59 85-117 (201)
210 PF04012 PspA_IM30: PspA/IM30 20.5 5.4E+02 0.012 21.9 9.3 84 52-135 72-156 (221)
211 COG3206 GumC Uncharacterized p 20.4 7.5E+02 0.016 23.6 10.5 99 23-121 280-403 (458)
212 cd08313 Death_TNFR1 Death doma 20.3 80 0.0017 24.5 2.0 33 213-245 2-34 (80)
213 KOG0244 Kinesin-like protein [ 20.2 1.2E+02 0.0025 33.4 3.8 95 158-272 464-565 (913)
214 PF01813 ATP-synt_D: ATP synth 20.2 3.6E+02 0.0079 23.0 6.2 72 15-111 104-175 (196)
No 1
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=97.64 E-value=0.0067 Score=67.76 Aligned_cols=194 Identities=25% Similarity=0.363 Sum_probs=136.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhhHhhhH
Q 024148 42 KNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQL 121 (272)
Q Consensus 42 rnvvsLaaELK~~R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Leek~eQL~as~~stEkyl~eLD~lRSQL 121 (272)
..|.-+-..+++...+++.-++.+..|=-+|..+|..-+-++.|+..|++.|++..+...+-....-+.-.|+..||..|
T Consensus 1090 ~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~l 1169 (1930)
T KOG0161|consen 1090 AEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDL 1169 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555666666667777888888899999999999999999999999998888888888888889999999988
Q ss_pred HHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhchhhhhhhHhhhhHHHHHhHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 024148 122 AATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQT 201 (272)
Q Consensus 122 s~TqATAeaSAaSAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~lgeQLd~LqK~LqaRE~SQkQLKDeVlriE~dIm~A 201 (272)
.-..-+-++..+... +.|.+.|..+++|++++++.-+-.+--...|.-++..++..+=..
T Consensus 1170 eee~~~~e~~~~~lr--------------------~~~~~~~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~ 1229 (1930)
T KOG0161|consen 1170 EEETLDHEAQIEELR--------------------KKHADSLAELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQL 1229 (1930)
T ss_pred HHHHHhHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 765544443333221 889999999999999999998888777777777777666655421
Q ss_pred HHHhcCCchhHHHHhhhccCcchHHhhhhhhccchhHhhhhhhhhHHHhhhccchhhhhHHhhh
Q 024148 202 IAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELESQRS 265 (272)
Q Consensus 202 vakag~~~d~El~kil~evspkn~e~inkll~~kD~eIakLrdeirimSaHW~~KTKELEsQle 265 (272)
. ++ +.+.|.+- +-+|.-+.-|..|++++.++..+|..-..--.+...+|.+|++
T Consensus 1230 ~-~~--k~~~e~~~-------k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~le 1283 (1930)
T KOG0161|consen 1230 S-SE--KKDLEKKD-------KKLEAQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLE 1283 (1930)
T ss_pred h-hh--hccHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhH
Confidence 1 22 22222222 3444555567778888888877755444444444555555554
No 2
>PRK02224 chromosome segregation protein; Provisional
Probab=97.35 E-value=0.097 Score=52.08 Aligned_cols=132 Identities=18% Similarity=0.246 Sum_probs=88.2
Q ss_pred CCccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHhhhhhhh
Q 024148 21 VPAREIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRL 100 (272)
Q Consensus 21 ~~~~elDPLLkDL~EKK~sfRrnvvsLaaELK~~R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Leek~eQL 100 (272)
+...++-.++.++.++.......+-.|..++.+++.++...+..... +.....++.....+...++++.+++
T Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~e~l~~~~~~--------~~~l~~l~~~~~~l~~~~~~~~e~l 532 (880)
T PRK02224 461 VEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEA--------EDRIERLEERREDLEELIAERRETI 532 (880)
T ss_pred CCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444447888888888888888889999999998888876665322 3333445555555555677777777
Q ss_pred hhhhhhHHHHHHHhhhHhhhHHHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhchhhhhh
Q 024148 101 QASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHE 160 (272)
Q Consensus 101 ~as~~stEkyl~eLD~lRSQLs~TqATAeaSAaSAqsaqlqCl~L~keL~eK~~sLkEhE 160 (272)
..-....+.+-.++..|++.+.-....++.--..+..+.--+..+-+++++-.+-+++.+
T Consensus 533 e~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le 592 (880)
T PRK02224 533 EEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLE 592 (880)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777888888888888766665554444444444456666666666555555555
No 3
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.19 E-value=0.28 Score=48.43 Aligned_cols=29 Identities=28% Similarity=0.550 Sum_probs=12.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024148 30 LKDLNEKKQSFRKNVVSLAAELKEVRTRL 58 (272)
Q Consensus 30 LkDL~EKK~sfRrnvvsLaaELK~~R~rL 58 (272)
+.+|......++.-+..+-.+++.++..+
T Consensus 679 ~~~l~~~~~~l~~~l~~~~~~~~~~~~~l 707 (1179)
T TIGR02168 679 IEELEEKIEELEEKIAELEKALAELRKEL 707 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444443
No 4
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=96.80 E-value=0.62 Score=46.07 Aligned_cols=70 Identities=17% Similarity=0.293 Sum_probs=38.6
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHhh
Q 024148 26 IDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEE 95 (272)
Q Consensus 26 lDPLLkDL~EKK~sfRrnvvsLaaELK~~R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Lee 95 (272)
+..-+.++..+-..++..+..+.+++.+++..+...+.....-.......+.....++.++..+...+..
T Consensus 682 l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~ 751 (1179)
T TIGR02168 682 LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQ 751 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777777777777777777777665544443332222233344444444444444444333
No 5
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.78 E-value=0.56 Score=49.47 Aligned_cols=14 Identities=14% Similarity=0.197 Sum_probs=7.8
Q ss_pred hccchhhhhHHhhh
Q 024148 252 HWKLKTKELESQRS 265 (272)
Q Consensus 252 HW~~KTKELEsQle 265 (272)
-|+.+.+.++.+++
T Consensus 946 ~~~~~i~~le~~i~ 959 (1163)
T COG1196 946 ELEREIERLEEEIE 959 (1163)
T ss_pred HHHHHHHHHHHHHH
Confidence 35666666655543
No 6
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=96.60 E-value=0.41 Score=48.36 Aligned_cols=127 Identities=22% Similarity=0.231 Sum_probs=89.2
Q ss_pred CCCCCCccccchhhhhh---HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHH-
Q 024148 17 SSSSVPAREIDPLLKDL---NEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKT- 92 (272)
Q Consensus 17 ~sss~~~~elDPLLkDL---~EKK~sfRrnvvsLaaELK~~R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~- 92 (272)
....+|..|+--+.+.| .-.+-.|..++--|-.|++++|.++...++...-.=..-...+.+.-..|.|++-+...
T Consensus 85 ~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~ 164 (546)
T KOG0977|consen 85 GIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRI 164 (546)
T ss_pred chhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHH
Confidence 34456666665554444 44788999999999999999999999998877654444455666777777777766543
Q ss_pred --HhhhhhhhhhhhhhHHHHHHHhhhHhhhHHHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhh
Q 024148 93 --LEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKN 153 (272)
Q Consensus 93 --Leek~eQL~as~~stEkyl~eLD~lRSQLs~TqATAeaSAaSAqsaqlqCl~L~keL~eK~ 153 (272)
|+|...-| ..|.+.||.+|..++.--++-...-.-.|.+|-.|+.+|+-..
T Consensus 165 ~~le~e~~~L----------k~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~ 217 (546)
T KOG0977|consen 165 KALEDELKRL----------KAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLK 217 (546)
T ss_pred HHHHHHHHHH----------HHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 33333333 3566777777777777666666667778899999999887644
No 7
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=96.04 E-value=0.053 Score=50.60 Aligned_cols=87 Identities=26% Similarity=0.394 Sum_probs=62.4
Q ss_pred ccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHhhhhhhhhh
Q 024148 23 AREIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQA 102 (272)
Q Consensus 23 ~~elDPLLkDL~EKK~sfRrnvvsLaaELK~~R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Leek~eQL~a 102 (272)
.+++=+-|+++-| .||+.+|+-| -|-.=++.|.-|=..+- .+.-.||+.+..+++.+.+|...+..
T Consensus 79 ~r~lk~~l~evEe---kyrkAMv~na-QLDNek~~l~yqvd~Lk----------d~lee~eE~~~~~~re~~eK~~elEr 144 (302)
T PF09738_consen 79 LRDLKDSLAEVEE---KYRKAMVSNA-QLDNEKSALMYQVDLLK----------DKLEELEETLAQLQREYREKIRELER 144 (302)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHh-hhchHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444 5999999876 36555666655544443 33446999999999999999988887
Q ss_pred hhhhHHHHHHHhhhHhhhHHH
Q 024148 103 SACTAEKYLMQLDGLRSQLAA 123 (272)
Q Consensus 103 s~~stEkyl~eLD~lRSQLs~ 123 (272)
---.....-.|+|.||.+|..
T Consensus 145 ~K~~~d~L~~e~~~Lre~L~~ 165 (302)
T PF09738_consen 145 QKRAHDSLREELDELREQLKQ 165 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 777777777899999999863
No 8
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=95.75 E-value=1.3 Score=39.02 Aligned_cols=76 Identities=24% Similarity=0.370 Sum_probs=43.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhh--------------hhhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHh
Q 024148 29 LLKDLNEKKQSFRKNVVSLAAELKEVRTRL--------------ASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLE 94 (272)
Q Consensus 29 LLkDL~EKK~sfRrnvvsLaaELK~~R~rL--------------asQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Le 94 (272)
.|.+++.-|-.+--.+-.+-.|+.+.|.|+ ..--..+-.++..|-..+.+..++.+|+.-+.+--+
T Consensus 62 ~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~he 141 (312)
T PF00038_consen 62 QIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHE 141 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhh
Confidence 344444444444444444445555555444 333445566777777777777777777777766666
Q ss_pred hhhhhhhhhh
Q 024148 95 ERNGRLQASA 104 (272)
Q Consensus 95 ek~eQL~as~ 104 (272)
+....|++..
T Consensus 142 eEi~~L~~~~ 151 (312)
T PF00038_consen 142 EEIEELREQI 151 (312)
T ss_dssp HHHHTTSTT-
T ss_pred hhhhhhhhcc
Confidence 5555555444
No 9
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=95.21 E-value=5.2 Score=42.51 Aligned_cols=60 Identities=23% Similarity=0.317 Sum_probs=41.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHH
Q 024148 28 PLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEIC 87 (272)
Q Consensus 28 PLLkDL~EKK~sfRrnvvsLaaELK~~R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~ 87 (272)
+-|..|.++-...+..+..+-.+++++.+.+..-+.....-......+.........++.
T Consensus 667 ~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (1163)
T COG1196 667 RELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELA 726 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355578888888888888888888888888887777776666555555554333333333
No 10
>PRK02224 chromosome segregation protein; Provisional
Probab=95.03 E-value=4.4 Score=40.69 Aligned_cols=18 Identities=33% Similarity=0.647 Sum_probs=7.4
Q ss_pred HHHHHHHHHHhhhhhhhh
Q 024148 46 SLAAELKEVRTRLASQEQ 63 (272)
Q Consensus 46 sLaaELK~~R~rLasQEq 63 (272)
.+..+++....++...+.
T Consensus 255 ~l~~~~~~l~~~i~~~e~ 272 (880)
T PRK02224 255 TLEAEIEDLRETIAETER 272 (880)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444333
No 11
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.72 E-value=7.4 Score=41.85 Aligned_cols=86 Identities=12% Similarity=0.240 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhch------HHHHHHHHHHHhhhhhhhhhhhh--hHHHH
Q 024148 39 SFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNM------EDEICKLQKTLEERNGRLQASAC--TAEKY 110 (272)
Q Consensus 39 sfRrnvvsLaaELK~~R~rLasQEq~~akEt~tRk~aE~kak~M------E~Ei~kLqK~Leek~eQL~as~~--stEky 110 (272)
.++..+..+-.++.+++..|...+..+.+-....+.++.-.+.| ..||..+++.+++-...+..+.+ +.+..
T Consensus 748 ~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~~~s~~el 827 (1311)
T TIGR00606 748 ELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQV 827 (1311)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHH
Confidence 34455555555555555555555555555444444443333333 55666666666655444443332 23334
Q ss_pred HHHhhhHhhhHHHH
Q 024148 111 LMQLDGLRSQLAAT 124 (272)
Q Consensus 111 l~eLD~lRSQLs~T 124 (272)
-.+++.+..++..+
T Consensus 828 e~ei~~~~~el~~l 841 (1311)
T TIGR00606 828 NQEKQEKQHELDTV 841 (1311)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444444
No 12
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.72 E-value=7.4 Score=41.85 Aligned_cols=51 Identities=18% Similarity=0.152 Sum_probs=27.9
Q ss_pred HHHHHHHhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhhHhhhHH
Q 024148 72 RQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLA 122 (272)
Q Consensus 72 Rk~aE~kak~ME~Ei~kLqK~Leek~eQL~as~~stEkyl~eLD~lRSQLs 122 (272)
|...+.....+..++..+...+.+.+.++..-...-++...+++.+|.+..
T Consensus 883 r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 933 (1311)
T TIGR00606 883 RQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKE 933 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 344555555566666666666666555555555555555555555554443
No 13
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=93.57 E-value=8.2 Score=38.03 Aligned_cols=183 Identities=20% Similarity=0.302 Sum_probs=102.9
Q ss_pred HhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHhhhhhhhhhhhhh----------HHHHHHHhhhHhhhHHHH
Q 024148 55 RTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACT----------AEKYLMQLDGLRSQLAAT 124 (272)
Q Consensus 55 R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Leek~eQL~as~~s----------tEkyl~eLD~lRSQLs~T 124 (272)
-.++..---.|.+|-..++.+++....++.-+..+.+...+-...+.--.-+ ..++-.+|..+..++...
T Consensus 288 ~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~ 367 (569)
T PRK04778 288 QERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEI 367 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444457889999999999999988888888777555444333332222 555667788888777754
Q ss_pred HHhhHhhHHhHHHHHHHHHHHHhhhhhhhchhhhhhhHhhhhHHHHHhHHHHH-hhhhhhHHHHHHHHH-----------
Q 024148 125 KATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDL-QARESSQKQLKDEVF----------- 192 (272)
Q Consensus 125 qATAeaSAaSAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~lgeQLd~LqK~L-qaRE~SQkQLKDeVl----------- 192 (272)
.......+.+-...+-.+-.+.++|+ +=+.....+.+.+..|.++- .+|+- -..++..+-
T Consensus 368 ~~~i~~~~~~ysel~e~leel~e~le-------eie~eq~ei~e~l~~Lrk~E~eAr~k-L~~~~~~L~~ikr~l~k~~l 439 (569)
T PRK04778 368 TERIAEQEIAYSELQEELEEILKQLE-------EIEKEQEKLSEMLQGLRKDELEAREK-LERYRNKLHEIKRYLEKSNL 439 (569)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcCC
Confidence 44443333333333334444443333 33333333333333333322 11111 112222211
Q ss_pred -HHHHHHHHHHHHhcCCchhHHHHhhhccCcchHHhhhhhhccchhHhhhhhhhhH
Q 024148 193 -RIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIK 247 (272)
Q Consensus 193 -riE~dIm~Avakag~~~d~El~kil~evspkn~e~inkll~~kD~eIakLrdeir 247 (272)
.|..+.++.+..+ ...--.|.+-|+. .|=|.+.|++.+..-.+.+..|.++..
T Consensus 440 pgip~~y~~~~~~~-~~~i~~l~~~L~~-g~VNm~ai~~e~~e~~~~~~~L~~q~~ 493 (569)
T PRK04778 440 PGLPEDYLEMFFEV-SDEIEALAEELEE-KPINMEAVNRLLEEATEDVETLEEETE 493 (569)
T ss_pred CCCcHHHHHHHHHH-HHHHHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2344566666433 4455567788888 999999999777766677777776654
No 14
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=93.27 E-value=7.3 Score=40.26 Aligned_cols=72 Identities=22% Similarity=0.360 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHH----------------------HHHhhchHHHHHHHHHHH
Q 024148 36 KKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEA----------------------EMKAKNMEDEICKLQKTL 93 (272)
Q Consensus 36 KK~sfRrnvvsLaaELK~~R~rLasQEq~~akEt~tRk~a----------------------E~kak~ME~Ei~kLqK~L 93 (272)
-|+.=|.++.+|---|++-|..-++-|..+..|--.|+.+ ..|.+.||.|+.+|+..|
T Consensus 482 aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~el 561 (697)
T PF09726_consen 482 ARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRREL 561 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555566666666666666665566666666665555433 235567888888888888
Q ss_pred hhhhhhhhhhhhhH
Q 024148 94 EERNGRLQASACTA 107 (272)
Q Consensus 94 eek~eQL~as~~st 107 (272)
..+.+|++.--...
T Consensus 562 k~kee~~~~~e~~~ 575 (697)
T PF09726_consen 562 KQKEEQIRELESEL 575 (697)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888877655444
No 15
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=92.52 E-value=2.7 Score=37.19 Aligned_cols=93 Identities=28% Similarity=0.406 Sum_probs=74.3
Q ss_pred hchHHHHHHHHHHHhhhhhhhhhhhhhHH-------HHHHHhhhHhhhHHHHHHhhHhhHHhHHHHHHHHHHHHhhhhhh
Q 024148 80 KNMEDEICKLQKTLEERNGRLQASACTAE-------KYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEK 152 (272)
Q Consensus 80 k~ME~Ei~kLqK~Leek~eQL~as~~stE-------kyl~eLD~lRSQLs~TqATAeaSAaSAqsaqlqCl~L~keL~eK 152 (272)
..+|.||+..+.-+++-..+|..+-+... +-..++..|+.-|-.++.+.+..-..+..+| .+|.+|
T Consensus 70 eqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ-------~el~eK 142 (188)
T PF05335_consen 70 EQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQ-------QELAEK 142 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH
Confidence 46788899888888888888877655444 3556777777777777777766666666665 578999
Q ss_pred hchhhhhhhHhhhhHHHHHhHHHHHhh
Q 024148 153 NSSLKEHEDRVTRLGQQLDNLQKDLQA 179 (272)
Q Consensus 153 ~~sLkEhE~rV~~lgeQLd~LqK~Lqa 179 (272)
+..|..=..||..|..||.....|++.
T Consensus 143 ~qLLeaAk~Rve~L~~QL~~Ar~D~~~ 169 (188)
T PF05335_consen 143 TQLLEAAKRRVEELQRQLQAARADYEK 169 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999874
No 16
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=92.45 E-value=12 Score=36.92 Aligned_cols=200 Identities=21% Similarity=0.270 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhhHhhhHHHH
Q 024148 45 VSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAAT 124 (272)
Q Consensus 45 vsLaaELK~~R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Leek~eQL~as~~stEkyl~eLD~lRSQLs~T 124 (272)
+.+..+++..+.++..=...... ..=+.|+.+...+++.|..|...|+--..--........++-..|+.++.+...+
T Consensus 252 ~~i~~~i~~l~~~i~~~~~~l~~--l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l 329 (569)
T PRK04778 252 LDIEKEIQDLKEQIDENLALLEE--LDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKEL 329 (569)
T ss_pred CChHHHHHHHHHHHHHHHHHHHh--cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 45666777776666553322221 1115567777777777777766665433322222222222223333333333322
Q ss_pred HHhhHhhHHh----------HHHHHHHHHHHHhhhhhhhchhhhhhhHhhhhHHHHHhHHHHHhhhhhhHHHHHHHHHHH
Q 024148 125 KATADASAAS----------AQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRI 194 (272)
Q Consensus 125 qATAeaSAaS----------AqsaqlqCl~L~keL~eK~~sLkEhE~rV~~lgeQLd~LqK~LqaRE~SQkQLKDeVlri 194 (272)
..--+--..| ....+=+.-.+-+.+.+-...+.++......+.++++.+.+.+..=+-.|..+++.+-.+
T Consensus 330 ~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~L 409 (569)
T PRK04778 330 KEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGL 409 (569)
T ss_pred HHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222222 344444555555665555566667777777788888888888888888899999999999
Q ss_pred HHHHHHHHHHhcC--CchhHHHHhhhc-cCcchHHhhhhhhccchhHhhhhhhhh
Q 024148 195 EQDIMQTIAKAGV--NKDCELRKLLDE-VSPKNFERINKLLVVKDEEIHKLKDEI 246 (272)
Q Consensus 195 E~dIm~Avakag~--~~d~El~kil~e-vspkn~e~inkll~~kD~eIakLrdei 246 (272)
..+..+|-.+... .+-.++...+.. --|.--+.+-..+..-.++|.+|..+|
T Consensus 410 rk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~~~~~~~~~i~~l~~~L 464 (569)
T PRK04778 410 RKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLEMFFEVSDEIEALAEEL 464 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHh
Confidence 9999988766542 222233322222 133333333334444456666666554
No 17
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=91.88 E-value=25 Score=39.40 Aligned_cols=195 Identities=25% Similarity=0.273 Sum_probs=91.9
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHH-----hhHHHHHHHhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHH-------HHh
Q 024148 47 LAAELKEVRTRLASQEQCFVKET-----LTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYL-------MQL 114 (272)
Q Consensus 47 LaaELK~~R~rLasQEq~~akEt-----~tRk~aE~kak~ME~Ei~kLqK~Leek~eQL~as~~stEkyl-------~eL 114 (272)
+.+||.++..+|.++++.+-++= ..-++++.++.--|++..+|...+.++.++|.- +.++. ..+
T Consensus 466 ~~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~----~q~~~~~~~~~~~kv 541 (1317)
T KOG0612|consen 466 MDKELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELED----AQKKNDNAADSLEKV 541 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhH
Confidence 78899999999999888887511 111444444444444444443333333333322 23333 333
Q ss_pred hhHhhhHHHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhchhhhhhhHhhhhHHHHHhHHHHHhhhhhhHHHHHHH---H
Q 024148 115 DGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDE---V 191 (272)
Q Consensus 115 D~lRSQLs~TqATAeaSAaSAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~lgeQLd~LqK~LqaRE~SQkQLKDe---V 191 (272)
..+|-||..+.. ++.|.++... +|....+++.....++.+ .+..+++-+..|+.+...-.=-.++++.+ .
T Consensus 542 ~~~rk~le~~~~--d~~~e~~~~~--kl~~~~~e~~~~iq~~~e---~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~ 614 (1317)
T KOG0612|consen 542 NSLRKQLEEAEL--DMRAESEDAG--KLRKHSKELSKQIQQELE---ENRDLEDKLSLLEESKSKLSKENKKLRSELEKE 614 (1317)
T ss_pred HHHHHHHHHhhh--hhhhhHHHHh--hHhhhhhhhhHHHHHHhh---ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444443322 2333333222 233333443333333333 45555666666655543332223333333 2
Q ss_pred HHHHHHHHHHHHHhc----------CCchhHHHHhhhccCcchHHhhhhhhccchhHhhhhhhhhHHHhhhccchhhhhH
Q 024148 192 FRIEQDIMQTIAKAG----------VNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELE 261 (272)
Q Consensus 192 lriE~dIm~Avakag----------~~~d~El~kil~evspkn~e~inkll~~kD~eIakLrdeirimSaHW~~KTKELE 261 (272)
.+-.++|-+.++-+. ....++++|+.+ .---|-|. |.-.-.+ =+-+||..+-|.++
T Consensus 615 ~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~e-l~r~~~e~-----------~~~~ek~--~~e~~~e~~lk~~q 680 (1317)
T KOG0612|consen 615 RRQRTEISEIIAELKEEISSLEETLKAGKKELLKVEE-LKRENQER-----------ISDSEKE--ALEIKLERKLKMLQ 680 (1317)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHH-HHHHHHHH-----------HHHHHHH--HHHHHHHHHHHHHH
Confidence 233333333332221 234455555544 22222222 2222222 56789999998888
Q ss_pred Hhhhh
Q 024148 262 SQRSN 266 (272)
Q Consensus 262 sQlek 266 (272)
.+++.
T Consensus 681 ~~~eq 685 (1317)
T KOG0612|consen 681 NELEQ 685 (1317)
T ss_pred HHHHH
Confidence 87764
No 18
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=91.70 E-value=3.6 Score=38.50 Aligned_cols=16 Identities=31% Similarity=0.314 Sum_probs=11.6
Q ss_pred hhhhHHHHHhHHHHHh
Q 024148 163 VTRLGQQLDNLQKDLQ 178 (272)
Q Consensus 163 V~~lgeQLd~LqK~Lq 178 (272)
|++|..+++.||+-.-
T Consensus 273 i~~Lk~~~~~Le~l~g 288 (312)
T smart00787 273 IEKLKEQLKLLQSLTG 288 (312)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 6778888888877543
No 19
>PRK09039 hypothetical protein; Validated
Probab=91.49 E-value=12 Score=35.04 Aligned_cols=30 Identities=27% Similarity=0.367 Sum_probs=17.8
Q ss_pred hhhhhhhchhhhhhhHhhhhHHHHHhHHHH
Q 024148 147 KELDEKNSSLKEHEDRVTRLGQQLDNLQKD 176 (272)
Q Consensus 147 keL~eK~~sLkEhE~rV~~lgeQLd~LqK~ 176 (272)
.+|.+......|---.|.+|..|+..|...
T Consensus 123 ~~L~~~k~~~se~~~~V~~L~~qI~aLr~Q 152 (343)
T PRK09039 123 QELDSEKQVSARALAQVELLNQQIAALRRQ 152 (343)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 556555555555555666666666665554
No 20
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=91.47 E-value=18 Score=36.98 Aligned_cols=74 Identities=23% Similarity=0.278 Sum_probs=42.3
Q ss_pred HHHhhhhhhhhhhhhhHHHHHHHhhhHhhhHHHHHHhhHhhH------------HhHH---------HHHHHHHHHHhhh
Q 024148 91 KTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASA------------ASAQ---------SAQLQCLALVKEL 149 (272)
Q Consensus 91 K~Leek~eQL~as~~stEkyl~eLD~lRSQLs~TqATAeaSA------------aSAq---------saqlqCl~L~keL 149 (272)
.+|.+...++......+.++..|++.|+.||..++....||- +++. .+.|+|-.|..+|
T Consensus 262 ~rLk~~~~~~~~~~~~~~~~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qL 341 (546)
T PF07888_consen 262 QRLKETVVQLKQEETQAQQLQQENEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQL 341 (546)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 344444444444444455566777888877777766655442 2221 2445666667777
Q ss_pred hhhhchhhhhhhHhh
Q 024148 150 DEKNSSLKEHEDRVT 164 (272)
Q Consensus 150 ~eK~~sLkEhE~rV~ 164 (272)
.+-.--|+|+.-+..
T Consensus 342 ad~~l~lke~~~q~~ 356 (546)
T PF07888_consen 342 ADASLELKEGRSQWA 356 (546)
T ss_pred HHHHHHHHHHHHHHH
Confidence 776667777664433
No 21
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=91.05 E-value=10 Score=33.40 Aligned_cols=136 Identities=18% Similarity=0.273 Sum_probs=62.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHhhhhhhhhhhhhhHHH
Q 024148 30 LKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEK 109 (272)
Q Consensus 30 LkDL~EKK~sfRrnvvsLaaELK~~R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Leek~eQL~as~~stEk 109 (272)
|.+||.+=.+|=--|-.|=++=+.....+..-......++ . .-....|.||..|.+.+.+-..+-..-..-...
T Consensus 6 L~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~-----~-~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~ 79 (312)
T PF00038_consen 6 LQSLNDRLASYIEKVRFLEQENKRLESEIEELREKKGEEV-----S-RIKEMYEEELRELRRQIDDLSKEKARLELEIDN 79 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------H-HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccC-----c-ccccchhhHHHHhHHhhhhHHHHhhHHhhhhhh
Confidence 4455655555555555554444443333332222221111 1 111224555555555554444433333334444
Q ss_pred HHHHhhhHhhhHHHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhchhhhhhhHhhhhHHHHHhHHHHHh
Q 024148 110 YLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQ 178 (272)
Q Consensus 110 yl~eLD~lRSQLs~TqATAeaSAaSAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~lgeQLd~LqK~Lq 178 (272)
+..+++++|.++.... +-=+.+.-....|-+.+++-+..-..=+-++..|.++|+-+.+.++
T Consensus 80 l~~e~~~~r~k~e~e~-------~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~he 141 (312)
T PF00038_consen 80 LKEELEDLRRKYEEEL-------AERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHE 141 (312)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhh
Confidence 5555555555554431 1112333344445566666665555666666666666666655554
No 22
>PF15294 Leu_zip: Leucine zipper
Probab=90.47 E-value=4.1 Score=38.33 Aligned_cols=74 Identities=23% Similarity=0.426 Sum_probs=56.7
Q ss_pred HhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHhhhccCcchHHhhhhhhccchhHhhhhhhhhH
Q 024148 171 DNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIK 247 (272)
Q Consensus 171 d~LqK~LqaRE~SQkQLKDeVlriE~dIm~Avakag~~~d~El~kil~evspkn~e~inkll~~kD~eIakLrdeir 247 (272)
+.+.+-+...+.+++-|++.|-.-=+++...=.. ..-...||.+.+.+ ...|-||-.+|.-|.++|.-||..+.
T Consensus 204 ~e~ek~~~d~~~~~k~L~e~L~~~KhelL~~Qeq-L~~aekeLekKfqq--T~ay~NMk~~ltkKn~QiKeLRkrl~ 277 (278)
T PF15294_consen 204 SELEKALQDKESQQKALEETLQSCKHELLRVQEQ-LSLAEKELEKKFQQ--TAAYRNMKEILTKKNEQIKELRKRLA 277 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh-hhcchhhHHHHhCc--cHHHHHhHHHHHhccHHHHHHHHHhc
Confidence 4456667777788888888887777776654433 45667788888875 56799999999999999999998763
No 23
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=89.86 E-value=22 Score=35.34 Aligned_cols=94 Identities=16% Similarity=0.252 Sum_probs=50.1
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHhhhhhhhhhhhh
Q 024148 26 IDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASAC 105 (272)
Q Consensus 26 lDPLLkDL~EKK~sfRrnvvsLaaELK~~R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Leek~eQL~as~~ 105 (272)
+|-|-.||..-....++++. ..++..++..-|+-+..-.......+.....++.++..+++.+++-...++....
T Consensus 184 ~~~L~~dl~~~~~~~~~~~~-----~~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG 258 (650)
T TIGR03185 184 IDRLAGDLTNVLRRRKKSEL-----PSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGG 258 (650)
T ss_pred HHHHHHHHHHHHHHHHhccc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34466677664444444431 2333333333333333333333445556667777777777777777776666543
Q ss_pred hHHHHHHHhhhHhhhHHHHHHh
Q 024148 106 TAEKYLMQLDGLRSQLAATKAT 127 (272)
Q Consensus 106 stEkyl~eLD~lRSQLs~TqAT 127 (272)
.+..+.+.|..++....+.
T Consensus 259 ---~~~~~r~~Le~ei~~le~e 277 (650)
T TIGR03185 259 ---DLFEEREQLERQLKEIEAA 277 (650)
T ss_pred ---hHHHHHHHHHHHHHHHHHH
Confidence 3555555555555554443
No 24
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=89.66 E-value=23 Score=35.24 Aligned_cols=99 Identities=21% Similarity=0.297 Sum_probs=67.9
Q ss_pred cccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHhhhhhhhhhh
Q 024148 24 REIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQAS 103 (272)
Q Consensus 24 ~elDPLLkDL~EKK~sfRrnvvsLaaELK~~R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Leek~eQL~as 103 (272)
.++..-++++..+...+......+-++++++..++..-++.|..+.-.+ ++. -..+|.++..+...+.+...++.-.
T Consensus 212 ~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~--~~~-r~~Le~ei~~le~e~~e~~~~l~~l 288 (650)
T TIGR03185 212 EALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDL--FEE-REQLERQLKEIEAARKANRAQLREL 288 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH--HHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556777778888888899999999999999998888888766543 222 2467788888888888888887755
Q ss_pred hhhHHH--HH-HHhhhHhhhHHHHH
Q 024148 104 ACTAEK--YL-MQLDGLRSQLAATK 125 (272)
Q Consensus 104 ~~stEk--yl-~eLD~lRSQLs~Tq 125 (272)
++..=- |+ +-++.++.|+..-+
T Consensus 289 ~~~~~p~~l~~~ll~~~~~q~~~e~ 313 (650)
T TIGR03185 289 AADPLPLLLIPNLLDSTKAQLQKEE 313 (650)
T ss_pred hcccCCHhhhHHHHHHHHHHHHHHH
Confidence 533211 22 45556666665544
No 25
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=89.38 E-value=0.11 Score=53.67 Aligned_cols=143 Identities=29% Similarity=0.406 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhhHhhhHH
Q 024148 43 NVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLA 122 (272)
Q Consensus 43 nvvsLaaELK~~R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Leek~eQL~as~~stEkyl~eLD~lRSQLs 122 (272)
.+..|-..+|+..+++..-+.-+.-|-..|.-||..-+.|..|+-.|...|++..+.-.|..-.--+.=.||..||.+|.
T Consensus 33 ~~~~l~k~~kelq~~i~el~eeLe~Er~~R~kaek~r~dL~~ELe~l~~~Lee~~~~t~aq~E~~kkrE~El~~Lrr~LE 112 (859)
T PF01576_consen 33 LRAQLQKKIKELQARIEELEEELESERQARAKAEKQRRDLSEELEELKERLEEAGGATQAQIELNKKREAELAKLRRDLE 112 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHhhHHHHHHHHHHHHHHHHHHH
Confidence 45556678899999999999999999999999999999999999999999988777655444444455589999999997
Q ss_pred HHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhchh-hhhhhHhhhhHHHHHhHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 024148 123 ATKATADASAASAQSAQLQCLALVKELDEKNSSL-KEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQT 201 (272)
Q Consensus 123 ~TqATAeaSAaSAqsaqlqCl~L~keL~eK~~sL-kEhE~rV~~lgeQLd~LqK~LqaRE~SQkQLKDeVlriE~dIm~A 201 (272)
-+....++..+ .| +-|.+.|..|.+|+|+++|.-..=+-...+|..+|--+-.++ +.
T Consensus 113 e~~~~~e~~~~---------------------~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l-~~ 170 (859)
T PF01576_consen 113 EANLQHEATLA---------------------ELRKKHQDAVAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQL-DS 170 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHH---------------------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HH
Confidence 65554444332 12 569999999999999999988877777778888877777666 44
Q ss_pred HHHhcC
Q 024148 202 IAKAGV 207 (272)
Q Consensus 202 vakag~ 207 (272)
+.++..
T Consensus 171 ~~k~k~ 176 (859)
T PF01576_consen 171 LQKAKQ 176 (859)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 445543
No 26
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=89.26 E-value=24 Score=34.79 Aligned_cols=17 Identities=29% Similarity=0.540 Sum_probs=7.4
Q ss_pred hhhhHHHHHhHHHHHhh
Q 024148 163 VTRLGQQLDNLQKDLQA 179 (272)
Q Consensus 163 V~~lgeQLd~LqK~Lqa 179 (272)
|..|..+|+.++..|++
T Consensus 339 v~~L~~eL~~~r~eLea 355 (522)
T PF05701_consen 339 VSSLEAELNKTRSELEA 355 (522)
T ss_pred HhhHHHHHHHHHHHHHH
Confidence 34444444444444433
No 27
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=89.05 E-value=25 Score=34.84 Aligned_cols=212 Identities=20% Similarity=0.294 Sum_probs=121.0
Q ss_pred ccchhhhhhHHHHHHHHHHHHHH-----HHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHhhh---
Q 024148 25 EIDPLLKDLNEKKQSFRKNVVSL-----AAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEER--- 96 (272)
Q Consensus 25 elDPLLkDL~EKK~sfRrnvvsL-----aaELK~~R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Leek--- 96 (272)
+++.-+.++.++-.....++..| ...+.+.-.++-.-=..|.+|-..|+.++.....+.+-|..+.+.-..-
T Consensus 249 ~i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e 328 (560)
T PF06160_consen 249 DIEEEIEQIEEQLEEALALLKNLELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEE 328 (560)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 35556777777766666665544 2333444444444556788999999999888888777776665443222
Q ss_pred hhhhhhhhh-------hHHHHHHHhhhHhhhHHHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhchhhhhhhHhhhhHHH
Q 024148 97 NGRLQASAC-------TAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQ 169 (272)
Q Consensus 97 ~eQL~as~~-------stEkyl~eLD~lRSQLs~TqATAeaSAaSAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~lgeQ 169 (272)
-..+..|-. ....|-.+|..|..+...... .-..-+..-+.+...+.+=...|.+.+.....+.+.
T Consensus 329 ~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~-------~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~ 401 (560)
T PF06160_consen 329 LERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEE-------RIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINES 401 (560)
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHH-------HHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222211 222233444444444433322 222223334556666777777888888888888888
Q ss_pred HHhHHHHHh-hhhhhHHHHHHHHHHHHHHHHHHHHHhc-CCchhH--------------HHHhhhccCcchHHhhhhhhc
Q 024148 170 LDNLQKDLQ-ARESSQKQLKDEVFRIEQDIMQTIAKAG-VNKDCE--------------LRKLLDEVSPKNFERINKLLV 233 (272)
Q Consensus 170 Ld~LqK~Lq-aRE~SQkQLKDeVlriE~dIm~Avakag-~~~d~E--------------l~kil~evspkn~e~inkll~ 233 (272)
|+.|.++-. ||+ .-..|+..+.- |-+-|.+.+ .|...+ |.+.|+. .|=|.+.||+.|.
T Consensus 402 l~~L~~dE~~Ar~-~l~~~~~~l~~----ikR~lek~nLPGlp~~y~~~~~~~~~~i~~l~~~L~~-~pinm~~v~~~l~ 475 (560)
T PF06160_consen 402 LQSLRKDEKEARE-KLQKLKQKLRE----IKRRLEKSNLPGLPEDYLDYFFDVSDEIEELSDELNQ-VPINMDEVNKQLE 475 (560)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHH----HHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHhc-CCcCHHHHHHHHH
Confidence 888887643 333 22233333322 223333333 233222 3333333 4889999999999
Q ss_pred cchhHhhhhhhhhHHH
Q 024148 234 VKDEEIHKLKDEIKIM 249 (272)
Q Consensus 234 ~kD~eIakLrdeirim 249 (272)
.=-+.|.+|.++..-|
T Consensus 476 ~a~~~v~~L~~~t~~l 491 (560)
T PF06160_consen 476 EAEDDVETLEEKTEEL 491 (560)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888999998876543
No 28
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=88.93 E-value=0.12 Score=53.31 Aligned_cols=113 Identities=23% Similarity=0.283 Sum_probs=0.0
Q ss_pred HHHHHhhHHHHHHHhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhhHhhhHHHHHHhhHhhHHhHHHHHHHHHH
Q 024148 65 FVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLA 144 (272)
Q Consensus 65 ~akEt~tRk~aE~kak~ME~Ei~kLqK~Leek~eQL~as~~stEkyl~eLD~lRSQLs~TqATAeaSAaSAqsaqlqCl~ 144 (272)
+-..+..+..+|.+.|.+|.++..|+..+.+-..++........++-.|+++|..+|.-...+.....-.-.+...|.--
T Consensus 168 l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLee 247 (859)
T PF01576_consen 168 LDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEE 247 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556677888999999999999999999999999988888888888999988888876665544443333334444444
Q ss_pred HHhhhhhhhchhhhhhhHhhhhHHHHHhHHHHH
Q 024148 145 LVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDL 177 (272)
Q Consensus 145 L~keL~eK~~sLkEhE~rV~~lgeQLd~LqK~L 177 (272)
+-..|++-+..-.-=.-.+..+...++.|...+
T Consensus 248 lk~~leeEtr~k~~L~~~l~~le~e~~~L~eql 280 (859)
T PF01576_consen 248 LKRQLEEETRAKQALEKQLRQLEHELEQLREQL 280 (859)
T ss_dssp ---------------------------------
T ss_pred hHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 445555433332222233444444444443333
No 29
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=88.72 E-value=35 Score=39.53 Aligned_cols=177 Identities=19% Similarity=0.255 Sum_probs=124.0
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH----hhHHHHHH-------HhhchHHHHHHHHHHH
Q 024148 25 EIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKET----LTRQEAEM-------KAKNMEDEICKLQKTL 93 (272)
Q Consensus 25 elDPLLkDL~EKK~sfRrnvvsLaaELK~~R~rLasQEq~~akEt----~tRk~aE~-------kak~ME~Ei~kLqK~L 93 (272)
.+.|=|++.-++--.++-++..=-.+..+...-.-+.|+++.++= ++|...+. +..+.|++|..|.+.+
T Consensus 902 ~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~ 981 (1822)
T KOG4674|consen 902 ILEDTLRKELEEITDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDETRLELEAKIESLHKKITSLEEELSELEKEI 981 (1822)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344557777777777777776666666666666667777665431 23444444 4556777777888888
Q ss_pred hhhhhhhhhhhhhHHH----HHHHhhhHhhhHHHHHHhhHhhHHhHHHHHHHHHHHHhhhhh----hhchhhhhhhH---
Q 024148 94 EERNGRLQASACTAEK----YLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDE----KNSSLKEHEDR--- 162 (272)
Q Consensus 94 eek~eQL~as~~stEk----yl~eLD~lRSQLs~TqATAeaSAaSAqsaqlqCl~L~keL~e----K~~sLkEhE~r--- 162 (272)
.+..+++..++-.-++ |..+++-+++-+......+...-..-...+.+|....+.++. ..+-|..|.+-
T Consensus 982 ~~l~~e~~~~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~ 1061 (1822)
T KOG4674|consen 982 ENLREELELSTKGKEDKLLDLSREISSLQNELKSLLKAASQANEQIEDLQNDLKTETEQLRKAQSKYESELVQHADLTQK 1061 (1822)
T ss_pred HHHHHHHhccccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888887777766665 889999999998888888877777778888899888666543 66778888875
Q ss_pred hhhhHHHHHhHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 024148 163 VTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQT 201 (272)
Q Consensus 163 V~~lgeQLd~LqK~LqaRE~SQkQLKDeVlriE~dIm~A 201 (272)
+.+|++++..++-.+..=..+-.+.-+.....+.|+|+.
T Consensus 1062 l~kl~ee~~~~~~e~~~Lk~~~~~~~~~l~e~~~~w~E~ 1100 (1822)
T KOG4674|consen 1062 LIKLREEFAKCNDELLKLKKSRESRHALLSEQERDWSEK 1100 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHhHHhhcccchHHH
Confidence 567788888877777666666556556666666666554
No 30
>PRK04863 mukB cell division protein MukB; Provisional
Probab=88.46 E-value=49 Score=37.35 Aligned_cols=76 Identities=18% Similarity=0.256 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc--CCchhHHHHhhhccCcchHHhhhhhhccchhHhhhhhh--hhHHHh---hhccchh
Q 024148 185 KQLKDEVFRIEQDIMQTIAKAG--VNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKD--EIKIMS---AHWKLKT 257 (272)
Q Consensus 185 kQLKDeVlriE~dIm~Avakag--~~~d~El~kil~evspkn~e~inkll~~kD~eIakLrd--eirimS---aHW~~KT 257 (272)
.++..++...|.....+=+... ......+..+.-.|+|.+--+-- ...|++ +.+++. +-|+.+-
T Consensus 452 ee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gkv~~~~a~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~ 522 (1486)
T PRK04863 452 QEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVA---------RELLRRLREQRHLAEQLQQLRMRL 522 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHH---------HHHHHHhHHHHHHHHhhHHHHHHH
Confidence 3555556666665555444333 44556777788888887654322 222221 333433 4688899
Q ss_pred hhhHHhhhhccc
Q 024148 258 KELESQRSNGEQ 269 (272)
Q Consensus 258 KELEsQlek~~~ 269 (272)
.+||..++.|++
T Consensus 523 ~~l~~~~~~q~~ 534 (1486)
T PRK04863 523 SELEQRLRQQQR 534 (1486)
T ss_pred HHHHHHHHHHHH
Confidence 999998888765
No 31
>PRK11637 AmiB activator; Provisional
Probab=87.76 E-value=25 Score=33.16 Aligned_cols=56 Identities=18% Similarity=0.238 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHhhhhhhhh
Q 024148 46 SLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQ 101 (272)
Q Consensus 46 sLaaELK~~R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Leek~eQL~ 101 (272)
.+..+|+.+...|..-++.+..=...-...+.+....+.+|..+++.+.....+|.
T Consensus 72 ~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~ 127 (428)
T PRK11637 72 SLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLA 127 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444443333333322222244556666666777777777666655553
No 32
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=87.68 E-value=29 Score=33.95 Aligned_cols=95 Identities=19% Similarity=0.332 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhh----hhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHhhhhhhhh-------hhhhhH
Q 024148 39 SFRKNVVSLAAELKEVRTRLASQ----EQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQ-------ASACTA 107 (272)
Q Consensus 39 sfRrnvvsLaaELK~~R~rLasQ----Eq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Leek~eQL~-------as~~st 107 (272)
-++--+..+.+|++.-|.+|..- ...|.-+...+..-.-+.++|.+-+..|...+...++-.. ..+...
T Consensus 113 ~lk~~l~e~~~El~~l~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~sL~ekl~lld~al~~~~~~~~~~~~~fl~rtl~~ 192 (511)
T PF09787_consen 113 VLKIRLQELDQELRRLRRQLEELQNEKSRILSDESTVSRLQNGAPRSLQEKLSLLDEALKREDGNAITAVVEFLKRTLKK 192 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence 34444555788888888777765 4445555544444334446666655555544443332211 112222
Q ss_pred H-----------------HHHHHhhhHhhhHHHHHHhhHhhHH
Q 024148 108 E-----------------KYLMQLDGLRSQLAATKATADASAA 133 (272)
Q Consensus 108 E-----------------kyl~eLD~lRSQLs~TqATAeaSAa 133 (272)
+ .|+.+..++-.++...++.++..-+
T Consensus 193 e~~~~~L~~~~~A~~~~~~~l~~~~e~~~~l~l~~~~~~~~~~ 235 (511)
T PF09787_consen 193 EIERQELEERPKALRHYIEYLRESGELQEQLELLKAEGESEEA 235 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 2 3667777788888888877765443
No 33
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=87.55 E-value=2 Score=36.63 Aligned_cols=97 Identities=25% Similarity=0.369 Sum_probs=28.5
Q ss_pred CCCCCCCCCCccccchhhhhhH-------HHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHH
Q 024148 13 SSSSSSSSVPAREIDPLLKDLN-------EKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDE 85 (272)
Q Consensus 13 ~~~~~sss~~~~elDPLLkDL~-------EKK~sfRrnvvsLaaELK~~R~rLasQEq~~akEt~tRk~aE~kak~ME~E 85 (272)
+.++|+++.+..++++.+-.|. -.+-.+-..|+.+-.+|...+..+..++... ..++.|
T Consensus 59 ~~~~~~~~~~~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l--------------~~l~~~ 124 (194)
T PF08614_consen 59 SESGSVSSAQISSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRL--------------AELEAE 124 (194)
T ss_dssp -------------------------------------------------------HHHHH--------------HHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHHH--------------HHHHHH
Confidence 3334445556666777654443 3344455556666666666666665554444 445555
Q ss_pred HHHHHHHHhhhhhhhhhhhhhHHHHHHHhhhHhhhHHH
Q 024148 86 ICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAA 123 (272)
Q Consensus 86 i~kLqK~Leek~eQL~as~~stEkyl~eLD~lRSQLs~ 123 (272)
+..|+..+.+..+.|..-....+-.-.|+.-|.-|+..
T Consensus 125 ~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~ 162 (194)
T PF08614_consen 125 LAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNM 162 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555566666777777655543
No 34
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=86.51 E-value=17 Score=30.05 Aligned_cols=72 Identities=18% Similarity=0.270 Sum_probs=36.9
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhhHh
Q 024148 47 LAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLR 118 (272)
Q Consensus 47 LaaELK~~R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Leek~eQL~as~~stEkyl~eLD~lR 118 (272)
+-.|+.+...+|+..++-+.++..-=...+.....+++....+++-+++..+.+.+....-..+..|+-+++
T Consensus 79 ~~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 79 LQGELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred hhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555544444333334444444455555555555555555555555555555555555555
No 35
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=85.98 E-value=3.1 Score=40.78 Aligned_cols=185 Identities=21% Similarity=0.318 Sum_probs=43.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHhhhhh---hh--h-hhh
Q 024148 31 KDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNG---RL--Q-ASA 104 (272)
Q Consensus 31 kDL~EKK~sfRrnvvsLaaELK~~R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Leek~e---QL--~-as~ 104 (272)
.+|++-|..+-..+.+|..++++++..|..|.....+.--.+ ..++..-....----. +. . +..
T Consensus 74 ~~ldevk~h~d~~~~~l~~~i~~lk~~l~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 143 (424)
T PF03915_consen 74 EPLDEVKKHIDSGIGGLSEEIEELKQELDEQQETILQRVKER----------QQSAAKPVARPAAAPPPSSAPSSSSSPQ 143 (424)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccchhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh----------hhhhcccccccccCCCCCcccccccCcC
Confidence 346777888888999999999999999998877663221111 1111100000000000 00 0 000
Q ss_pred hhHHHHHHHhhhHhhhHHHHHHhhHhhHHhHHHHHHHHHHHHhhhhh-------------hhchhhhhhhHhhhhHHHHH
Q 024148 105 CTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDE-------------KNSSLKEHEDRVTRLGQQLD 171 (272)
Q Consensus 105 ~stEkyl~eLD~lRSQLs~TqATAeaSAaSAqsaqlqCl~L~keL~e-------------K~~sLkEhE~rV~~lgeQLd 171 (272)
......++|+.+||.+|++.+.+-.+.........--|..-++.+.. =+++-++......+|-.++|
T Consensus 144 ~~~~~~~~Ev~~LRreLavLRQl~~~~~~~~~~~i~~i~~ki~~~k~~s~~~~~~~~R~~~~~~k~~L~~~sd~Ll~kVd 223 (424)
T PF03915_consen 144 STSKSDLKEVQSLRRELAVLRQLYSEFQSEVKESISSIREKIKKVKSASTNASGDSNRAYMESGKKKLSEESDRLLTKVD 223 (424)
T ss_dssp --------------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111478999999999999988777766666555555444333222 01122333334444444444
Q ss_pred hHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHhhhccCcchHHhhhhhhccchhHhhhhhhhhHHHhh
Q 024148 172 NLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSA 251 (272)
Q Consensus 172 ~LqK~LqaRE~SQkQLKDeVlriE~dIm~Avakag~~~d~El~kil~evspkn~e~inkll~~kD~eIakLrdeirimSa 251 (272)
.||--.+ +||..|. .-| --++|+.++.+.+.+.-=..++.++++-|..+-+
T Consensus 224 DLQD~VE-------~LRkDV~-----------~Rg-----------vRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp 274 (424)
T PF03915_consen 224 DLQDLVE-------DLRKDVV-----------QRG-----------VRPSPKQLETVAKDISRASKELKKMKEYIKTEKP 274 (424)
T ss_dssp HHHHHHH-------HHHHHHH-----------HH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-------HHHHHHH-----------HcC-----------CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence 4443332 2332221 111 1367888999999999989999999999999999
Q ss_pred hcc
Q 024148 252 HWK 254 (272)
Q Consensus 252 HW~ 254 (272)
+|+
T Consensus 275 ~Wk 277 (424)
T PF03915_consen 275 IWK 277 (424)
T ss_dssp HHH
T ss_pred HHH
Confidence 997
No 36
>PRK04863 mukB cell division protein MukB; Provisional
Probab=84.55 E-value=44 Score=37.63 Aligned_cols=13 Identities=8% Similarity=0.161 Sum_probs=5.5
Q ss_pred CcchHHhhhhhhc
Q 024148 221 SPKNFERINKLLV 233 (272)
Q Consensus 221 spkn~e~inkll~ 233 (272)
+|.|.+-++.+..
T Consensus 549 ~~~~~~~~~~~~~ 561 (1486)
T PRK04863 549 NLDDEDELEQLQE 561 (1486)
T ss_pred CCCCHHHHHHHHH
Confidence 3344444444443
No 37
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=84.42 E-value=40 Score=32.46 Aligned_cols=156 Identities=24% Similarity=0.319 Sum_probs=92.8
Q ss_pred CCCCCCCCCccccchhhhhhHHHHH-------HHHHHHHHHHHHHHHHHhh------hhhhhhHHHHHHhhH------HH
Q 024148 14 SSSSSSSVPAREIDPLLKDLNEKKQ-------SFRKNVVSLAAELKEVRTR------LASQEQCFVKETLTR------QE 74 (272)
Q Consensus 14 ~~~~sss~~~~elDPLLkDL~EKK~-------sfRrnvvsLaaELK~~R~r------LasQEq~~akEt~tR------k~ 74 (272)
..+|||++..-.+=+.+.-|-.+-- .+|.-+..|..|++.+|.- =|.||.-|.-=+.-+ |+
T Consensus 13 ~~~~~S~~t~~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~ke 92 (310)
T PF09755_consen 13 GMTSSSSATREQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKE 92 (310)
T ss_pred CCCCCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555554555555555544333 3566677888888888853 355666665555544 33
Q ss_pred HHHHhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHH-----HhhhHhhhHHHHHHhhHhhHHhHHHHHHHHHHHHhhh
Q 024148 75 AEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLM-----QLDGLRSQLAATKATADASAASAQSAQLQCLALVKEL 149 (272)
Q Consensus 75 aE~kak~ME~Ei~kLqK~Leek~eQL~as~~stEkyl~-----eLD~lRSQLs~TqATAeaSAaSAqsaqlqCl~L~keL 149 (272)
-|.=|.++|-|=.-|-..|.-|-.||+.--+..|.-|. .++.|+.+|.... ++..+-....-+|.+ ...
T Consensus 93 Ke~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le--~e~~~~q~~le~Lr~----EKV 166 (310)
T PF09755_consen 93 KETLALKYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLE--KEKSAKQEELERLRR----EKV 166 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHH----HHH
Confidence 44556677777777777788888888877776666542 2566666665432 222222111222222 122
Q ss_pred hhhhchhhhhhhHhhhhHHHHHhHHH
Q 024148 150 DEKNSSLKEHEDRVTRLGQQLDNLQK 175 (272)
Q Consensus 150 ~eK~~sLkEhE~rV~~lgeQLd~LqK 175 (272)
+=.|-.=.|-|.=||+|+-|.|.|-.
T Consensus 167 dlEn~LE~EQE~lvN~L~Kqm~~l~~ 192 (310)
T PF09755_consen 167 DLENTLEQEQEALVNRLWKQMDKLEA 192 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556888999999999998754
No 38
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=83.23 E-value=71 Score=37.32 Aligned_cols=148 Identities=23% Similarity=0.289 Sum_probs=82.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHhhhhhhhhhhhhhH
Q 024148 28 PLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTA 107 (272)
Q Consensus 28 PLLkDL~EKK~sfRrnvvsLaaELK~~R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Leek~eQL~as~~st 107 (272)
|.++||.--...-++.---+-+.+..+..|++.-+.-+..=...=.-++.--|..|-|...+...+...+.|.-++...-
T Consensus 1639 ~~~k~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~~~~~s~l~~~K 1718 (1930)
T KOG0161|consen 1639 AQLKELQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEELAERVNELNAQNSSLTAEK 1718 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccchhhHH
Confidence 44555555555555544445555555555544332222110000011222234455555555555555555544443333
Q ss_pred HHHHHHhhhHhhhHHHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhchhhhhhhHhhhhHHHHHhHHHHHhh
Q 024148 108 EKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQA 179 (272)
Q Consensus 108 Ekyl~eLD~lRSQLs~TqATAeaSAaSAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~lgeQLd~LqK~Lqa 179 (272)
-+.-.+|-.|.+.|.-++--..++-.=+.-|+.+|.-+..+|+.. ++|-.++.+.-.+|...-|||+.
T Consensus 1719 rklE~~i~~l~~elee~~~~~~~~~Er~kka~~~a~~~~~el~~E----q~~~~~le~~k~~LE~~~kdLq~ 1786 (1930)
T KOG0161|consen 1719 RKLEAEIAQLQSELEEEQSELRAAEERAKKAQADAAKLAEELRKE----QETSQKLERLKKSLERQVKDLQL 1786 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 345588899999999888888888888999999999999998863 23333344444444444444443
No 39
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=82.73 E-value=91 Score=35.25 Aligned_cols=233 Identities=21% Similarity=0.256 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH-HHHhhHHHHHHHhhchHHHHHHHHHHHhh-------hhhhhhhhhhh
Q 024148 35 EKKQSFRKNVVSLAAELKEVRTRLASQEQCFV-KETLTRQEAEMKAKNMEDEICKLQKTLEE-------RNGRLQASACT 106 (272)
Q Consensus 35 EKK~sfRrnvvsLaaELK~~R~rLasQEq~~a-kEt~tRk~aE~kak~ME~Ei~kLqK~Lee-------k~eQL~as~~s 106 (272)
-|.-.+..-.-++..+||+-.-+...-....+ ++..-++..+.+++.......-+++.+.+ +-++|.--.+-
T Consensus 334 ~ki~~~~~~~~~~~e~lk~~~ek~~~e~~~~~~k~e~~~~~~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k 413 (1293)
T KOG0996|consen 334 AKIAEMQEELEKIEEGLKDENEKFDIESNEEVEKNEAVKKEIKERAKELKNKFESLKKKFQDLEREDVKREEKLKRLTSK 413 (1293)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555566666666655542222221 12222244444554444444444444433 22344444455
Q ss_pred HHHHHHHhhhHhhhHHHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhchhhhhhhH----hhhhHHHHHhHHHHHhhhhh
Q 024148 107 AEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDR----VTRLGQQLDNLQKDLQARES 182 (272)
Q Consensus 107 tEkyl~eLD~lRSQLs~TqATAeaSAaSAqsaqlqCl~L~keL~eK~~sLkEhE~r----V~~lgeQLd~LqK~LqaRE~ 182 (272)
..|.-++++..|...+.....-+-+--.-+--|.---.|.+.+..-+..|.+.-+- -..+.+..+-+++.|.--..
T Consensus 414 ~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~ 493 (1293)
T KOG0996|consen 414 IKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLK 493 (1293)
T ss_pred HHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Confidence 55566677777666665443333222222222221222222222222333332222 22233444445555544444
Q ss_pred hHHHHHHH--HHHHHHHHHHHHHHhcCCchhHHHHhhhccCcchHHhhhhhhccchhHhhhhhhhhHHHhhhccchhhhh
Q 024148 183 SQKQLKDE--VFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKEL 260 (272)
Q Consensus 183 SQkQLKDe--VlriE~dIm~Avakag~~~d~El~kil~evspkn~e~inkll~~kD~eIakLrdeirimSaHW~~KTKEL 260 (272)
.-.+.+-+ |..-|-|||---.-.|..+.-++.+-|...+-.+-|+-+.+..++ .+|-.+++|++=.+.......++.
T Consensus 494 ~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k-~~l~~~k~e~~~~~k~l~~~~~e~ 572 (1293)
T KOG0996|consen 494 QVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLK-EELPSLKQELKEKEKELPKLRKEE 572 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhHHHHHHHHHHhHHHHHHHH
Confidence 44455555 777788888888888888888888888888877777766665555 678888888877765554444433
Q ss_pred ---HHhhhhcc
Q 024148 261 ---ESQRSNGE 268 (272)
Q Consensus 261 ---EsQlek~~ 268 (272)
-+|+-+++
T Consensus 573 ~~~~~~~~~~r 583 (1293)
T KOG0996|consen 573 RNLKSQLNKLR 583 (1293)
T ss_pred HHHHHHHHHHH
Confidence 34444443
No 40
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=82.47 E-value=15 Score=33.77 Aligned_cols=66 Identities=24% Similarity=0.409 Sum_probs=52.2
Q ss_pred HHHHHHHHhhhhhhhch----hhhhhhHhhhhHHHHHhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 024148 139 QLQCLALVKELDEKNSS----LKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAK 204 (272)
Q Consensus 139 qlqCl~L~keL~eK~~s----LkEhE~rV~~lgeQLd~LqK~LqaRE~SQkQLKDeVlriE~dIm~Avak 204 (272)
.++=+..+-.||-.+.+ .++|..-+.++-.+++-+.+.+.+.+.--..|+.+|.++|.||=++-.+
T Consensus 5 ~~~~L~~iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r 74 (239)
T COG1579 5 NLKSLLAIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRER 74 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455554444 4678888999999999999999999999999999999999999776544
No 41
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=81.30 E-value=1.2e+02 Score=35.57 Aligned_cols=213 Identities=23% Similarity=0.281 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHHHHhhhh----hhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHhhhhhhhhhhhhhHHH----HHHH
Q 024148 42 KNVVSLAAELKEVRTRLA----SQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEK----YLMQ 113 (272)
Q Consensus 42 rnvvsLaaELK~~R~rLa----sQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Leek~eQL~as~~stEk----yl~e 113 (272)
..+-+|-+|....+..|. .++.+---++.+|+--+.+.+.++.++.+|.+.|+++..+++..+..-++ |..-
T Consensus 766 ~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~ 845 (1822)
T KOG4674|consen 766 QELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNL 845 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 344455555555555443 23333344667888888999999999999999999999999999887665 4445
Q ss_pred hhhHhhhHHHHHHhhHhhHHh--HHHHHHHHHHHHhhhhh-hhch-----------hhhhhhHhhhhHHHHHhHHHHHhh
Q 024148 114 LDGLRSQLAATKATADASAAS--AQSAQLQCLALVKELDE-KNSS-----------LKEHEDRVTRLGQQLDNLQKDLQA 179 (272)
Q Consensus 114 LD~lRSQLs~TqATAeaSAaS--AqsaqlqCl~L~keL~e-K~~s-----------LkEhE~rV~~lgeQLd~LqK~Lqa 179 (272)
+|.+-+-+.-+..- -+-++ ......+-..|-|+|-. +..- ..--++-+....+|...|...|..
T Consensus 846 i~~~~~~~~~~~~~--l~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~ 923 (1822)
T KOG4674|consen 846 VDELESELKSLLTS--LDSVSTNIAKLEIKLSELEKRLKSAKTQLLNLDSKSSNEDATILEDTLRKELEEITDLKEELTD 923 (1822)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 55554443322211 11110 11222233333333322 1111 111122334444555555666666
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHhhhccCcchHHhhhhhhccchhHhhhhhhhhHHHhhhccchhhh
Q 024148 180 RESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKE 259 (272)
Q Consensus 180 RE~SQkQLKDeVlriE~dIm~Avakag~~~d~El~kil~evspkn~e~inkll~~kD~eIakLrdeirimSaHW~~KTKE 259 (272)
...--.|+++++...|.=+-.-. +++-+...++..+=-...+++-.+ -++|..|+++|-.++.--.+=+|.
T Consensus 924 a~s~i~~yqe~~~s~eqsl~~~k--------s~lde~~~~~ea~ie~~~~k~tsl-E~~ls~L~~~~~~l~~e~~~~~k~ 994 (1822)
T KOG4674|consen 924 ALSQIREYQEEYSSLEQSLESVK--------SELDETRLELEAKIESLHKKITSL-EEELSELEKEIENLREELELSTKG 994 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccccc
Confidence 65555677777777766554433 333333333333322233333333 356777888888887777777777
Q ss_pred hHHhhh
Q 024148 260 LESQRS 265 (272)
Q Consensus 260 LEsQle 265 (272)
.|.++.
T Consensus 995 ~e~~~~ 1000 (1822)
T KOG4674|consen 995 KEDKLL 1000 (1822)
T ss_pred hhhhHH
Confidence 777654
No 42
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=80.70 E-value=72 Score=32.73 Aligned_cols=36 Identities=19% Similarity=0.475 Sum_probs=22.1
Q ss_pred HhhhhHHHHHhHHHHHhhhhhhHHHHHHHHHHHHHH
Q 024148 162 RVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQD 197 (272)
Q Consensus 162 rV~~lgeQLd~LqK~LqaRE~SQkQLKDeVlriE~d 197 (272)
.|..+-++...+.-+++.++=..+||..++-++-.|
T Consensus 448 ~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~ 483 (594)
T PF05667_consen 448 EIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKD 483 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 345555666666666666666666666666665544
No 43
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=80.44 E-value=40 Score=29.64 Aligned_cols=52 Identities=17% Similarity=0.224 Sum_probs=28.1
Q ss_pred HHhhhHhhhHHHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhchhhhhhhHh
Q 024148 112 MQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRV 163 (272)
Q Consensus 112 ~eLD~lRSQLs~TqATAeaSAaSAqsaqlqCl~L~keL~eK~~sLkEhE~rV 163 (272)
..++..-.+|.++..--+-+-.-+..+.-.|-.|=.+|+.-.++|+..|-..
T Consensus 113 ~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~ 164 (237)
T PF00261_consen 113 RKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASE 164 (237)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhh
Confidence 3444555555555554444444455555566666666666666665444333
No 44
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=79.70 E-value=51 Score=30.40 Aligned_cols=16 Identities=38% Similarity=0.563 Sum_probs=7.4
Q ss_pred HHhhhHhhhHHHHHHh
Q 024148 112 MQLDGLRSQLAATKAT 127 (272)
Q Consensus 112 ~eLD~lRSQLs~TqAT 127 (272)
.+|..+|..|+...+.
T Consensus 209 ~eL~~lr~eL~~~~~~ 224 (325)
T PF08317_consen 209 EELEALRQELAEQKEE 224 (325)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444455555444443
No 45
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=78.96 E-value=1e+02 Score=33.43 Aligned_cols=88 Identities=25% Similarity=0.430 Sum_probs=48.4
Q ss_pred hhhHhhhhHHHHHhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhc--CCchhHHHHhhhccCcchHHhhhhhhccch
Q 024148 159 HEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAG--VNKDCELRKLLDEVSPKNFERINKLLVVKD 236 (272)
Q Consensus 159 hE~rV~~lgeQLd~LqK~LqaRE~SQkQLKDeVlriE~dIm~Avakag--~~~d~El~kil~evspkn~e~inkll~~kD 236 (272)
-..++..+..++..|.+.|+.-+ +-+.+|.+-+.+.-.-+.+.- .+...++..-+.++ .
T Consensus 769 D~~~I~~l~~~i~~L~~~l~~ie----~~r~~V~eY~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------------~ 829 (1201)
T PF12128_consen 769 DPERIQQLKQEIEQLEKELKRIE----ERRAEVIEYEDWLQEEWDKVDELREEKPELEEQLRDL---------------E 829 (1201)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHH---------------H
Confidence 34456666666666666655433 334555555555544443311 22223333333222 3
Q ss_pred hHhhhhhhhhHHHhhhccchhhhhHHhhh
Q 024148 237 EEIHKLKDEIKIMSAHWKLKTKELESQRS 265 (272)
Q Consensus 237 ~eIakLrdeirimSaHW~~KTKELEsQle 265 (272)
.++..|+.++....+.++.+-+++|..+.
T Consensus 830 ~~~~~l~~~~~~~~~~~~~~~~~le~~~~ 858 (1201)
T PF12128_consen 830 QELQELEQELNQLQKEVKQRRKELEEELK 858 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777777777776654
No 46
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.26 E-value=56 Score=35.71 Aligned_cols=136 Identities=21% Similarity=0.286 Sum_probs=77.1
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-HHHHHHhhH--HHHHHHhhchHHHHHHHHHHHhhhhhhhhh
Q 024148 26 IDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQ-CFVKETLTR--QEAEMKAKNMEDEICKLQKTLEERNGRLQA 102 (272)
Q Consensus 26 lDPLLkDL~EKK~sfRrnvvsLaaELK~~R~rLasQEq-~~akEt~tR--k~aE~kak~ME~Ei~kLqK~Leek~eQL~a 102 (272)
+|.-++|+.+-+..+.+++--|-++|+-++..+.+-=| .=+-+|.+. .-|+.+.+..+.+-..|.|.|+.++.
T Consensus 690 L~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q~~e~~~t~~eel~a~~~e~k~l~~~q~~l~~~L~k~~~---- 765 (970)
T KOG0946|consen 690 LEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQGAEASKTQNEELNAALSENKKLENDQELLTKELNKKNA---- 765 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHhHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhH----
Confidence 44445555555666666666666666655444332111 111111111 22333444444444444444444432
Q ss_pred hhhhHHHHHHHhhhHhhhHHHHHHhhHhh---HHhHHHHHHHHHHHHhhhhhhhchhhhhhhHhhhhHHHHHhHHHHHhh
Q 024148 103 SACTAEKYLMQLDGLRSQLAATKATADAS---AASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQA 179 (272)
Q Consensus 103 s~~stEkyl~eLD~lRSQLs~TqATAeaS---AaSAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~lgeQLd~LqK~Lqa 179 (272)
.+-+..+++-.|+.+ ..-+..-|-|-..+.+.|.++..+|-+|+...+++.+|..-+--+..|
T Consensus 766 --------------~~es~k~~~~~a~~~~~~~~~~~~~qeqv~El~~~l~e~~~~l~~~q~e~~~~keq~~t~~~~tsa 831 (970)
T KOG0946|consen 766 --------------DIESFKATQRSAELSQGSLNDNLGDQEQVIELLKNLSEESTRLQELQSELTQLKEQIQTLLERTSA 831 (970)
T ss_pred --------------HHHHHHHHHhhhhcccchhhhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444433 344566788999999999999999999999999999998765544443
No 47
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=77.96 E-value=22 Score=32.34 Aligned_cols=117 Identities=26% Similarity=0.403 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhhHhhhHH
Q 024148 43 NVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLA 122 (272)
Q Consensus 43 nvvsLaaELK~~R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Leek~eQL~as~~stEkyl~eLD~lRSQLs 122 (272)
-+|+|=+-|+++|+.|...+..... -..-...|++|.|+|. ..|+.+.....----...++-.|+.+||..++
T Consensus 32 Eiv~Lr~ql~e~~~~l~~~~~~~~~-----l~~~~~~K~~ELE~ce--~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~ 104 (202)
T PF06818_consen 32 EIVSLRAQLRELRAELRNKESQIQE-----LQDSLRTKQLELEVCE--NELQRKKNEAELLREKLGQLEAELAELREELA 104 (202)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHH-----HHHHHHHhhHhHHHhH--HHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHH
Confidence 4789999999999999877655431 0112345667777663 22322221111111112233457778888877
Q ss_pred HHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhchhhhhhhHhhhhHHHHHhHHHHHh
Q 024148 123 ATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQ 178 (272)
Q Consensus 123 ~TqATAeaSAaSAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~lgeQLd~LqK~Lq 178 (272)
.. +....+.+++.. -++=...-..+...+..|..+++.|+.+|.
T Consensus 105 ~~---------~~~~~~~~~l~~---~deak~~~~~~~~~~~~l~~e~erL~aeL~ 148 (202)
T PF06818_consen 105 CA---------GRLKRQCQLLSE---SDEAKAQRQAGEDELGSLRREVERLRAELQ 148 (202)
T ss_pred hh---------ccchhhhccccc---cchhHHhhccccccchhHHHHHHHHHHHHH
Confidence 65 111112222211 111111111155667777777777777765
No 48
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=77.10 E-value=40 Score=27.91 Aligned_cols=68 Identities=24% Similarity=0.404 Sum_probs=36.8
Q ss_pred CccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhH-HHHHHHhhchHHHHHHHH
Q 024148 22 PAREIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTR-QEAEMKAKNMEDEICKLQ 90 (272)
Q Consensus 22 ~~~elDPLLkDL~EKK~sfRrnvvsLaaELK~~R~rLasQEq~~akEt~tR-k~aE~kak~ME~Ei~kLq 90 (272)
...+.+..+..|.++-..|.+-+-.+..++...+.-...-.. +-+....| +..+...++|..|+..|+
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRE-LLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556666666666666666666666666655544333221 12222222 445555566666666666
No 49
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=76.83 E-value=1.1e+02 Score=32.63 Aligned_cols=160 Identities=19% Similarity=0.300 Sum_probs=100.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhh--hhhhHHH-HHHhhHHHHHHHhh----ch-------HHHHHHHHHHHhh
Q 024148 30 LKDLNEKKQSFRKNVVSLAAELKEVRTRLA--SQEQCFV-KETLTRQEAEMKAK----NM-------EDEICKLQKTLEE 95 (272)
Q Consensus 30 LkDL~EKK~sfRrnvvsLaaELK~~R~rLa--sQEq~~a-kEt~tRk~aE~kak----~M-------E~Ei~kLqK~Lee 95 (272)
+..=..|--+|-||+--|=.|+--.++++. ..+..|. ++-...+-.-...| .. .-|+-.+|..|++
T Consensus 233 ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~ 312 (775)
T PF10174_consen 233 IEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLET 312 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445566788888888888888877665 4444444 33322222211111 11 2356667777776
Q ss_pred hhhh----------hhhhhhhHHH----HHHHhhhHhhhHHHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhchhhhhhh
Q 024148 96 RNGR----------LQASACTAEK----YLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHED 161 (272)
Q Consensus 96 k~eQ----------L~as~~stEk----yl~eLD~lRSQLs~TqATAeaSAaSAqsaqlqCl~L~keL~eK~~sLkEhE~ 161 (272)
.+.| |+.+.++.++ +..++|.||..|.-....-+--.++...++=-=.-+..+|++...-+.-.+-
T Consensus 313 ~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ 392 (775)
T PF10174_consen 313 LEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKER 392 (775)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655 3344444444 6688999998887766555555555555555555667888888888888888
Q ss_pred HhhhhHHHHHhHHHHHhhhhhhHHHHHH
Q 024148 162 RVTRLGQQLDNLQKDLQARESSQKQLKD 189 (272)
Q Consensus 162 rV~~lgeQLd~LqK~LqaRE~SQkQLKD 189 (272)
.|+.|-..+++|...|.-++--...+++
T Consensus 393 ki~~Lq~kie~Lee~l~ekd~ql~~~k~ 420 (775)
T PF10174_consen 393 KINVLQKKIENLEEQLREKDRQLDEEKE 420 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888765543333333
No 50
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=76.78 E-value=62 Score=29.83 Aligned_cols=141 Identities=22% Similarity=0.325 Sum_probs=71.8
Q ss_pred HHHHhhhhhhhhhhhhhHHHHHHHhhhHhhhHHHHHHhhHhhHHhHHHHHHH---HHHHHhhhhhhhchhhhhhhHhhhh
Q 024148 90 QKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQ---CLALVKELDEKNSSLKEHEDRVTRL 166 (272)
Q Consensus 90 qK~Leek~eQL~as~~stEkyl~eLD~lRSQLs~TqATAeaSAaSAqsaqlq---Cl~L~keL~eK~~sLkEhE~rV~~l 166 (272)
..-|++.-+.|..-.-...+++..++.+.-+|..-++.-..-....+...-. |-. .+|..-...|.+|...+...
T Consensus 151 ~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~--~eL~~lr~eL~~~~~~i~~~ 228 (325)
T PF08317_consen 151 KEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQ--EELEALRQELAEQKEEIEAK 228 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCH--HHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444455555555444444443333222222222211 211 34444455666677667766
Q ss_pred HHHHHhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHhhhccCcchHHhhhhhhccchhHhhhhhhhh
Q 024148 167 GQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEI 246 (272)
Q Consensus 167 geQLd~LqK~LqaRE~SQkQLKDeVlriE~dIm~Avakag~~~d~El~kil~evspkn~e~inkll~~kD~eIakLrdei 246 (272)
...|+.++..++.-+..-..+..+.-.+...|-++=.... +.-.....||.+|++++
T Consensus 229 k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~-----------------------~~r~~t~~Ev~~Lk~~~ 285 (325)
T PF08317_consen 229 KKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIRE-----------------------ECRGWTRSEVKRLKAKV 285 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HhcCCCHHHHHHHHHHH
Confidence 6666666666666555555555555555555544432211 11223447888999998
Q ss_pred HHHh--hhccc
Q 024148 247 KIMS--AHWKL 255 (272)
Q Consensus 247 rimS--aHW~~ 255 (272)
+.|. ..|+.
T Consensus 286 ~~Le~~~gw~~ 296 (325)
T PF08317_consen 286 DALEKLTGWKI 296 (325)
T ss_pred HHHHHHHCcEE
Confidence 8775 35654
No 51
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=76.19 E-value=45 Score=27.91 Aligned_cols=63 Identities=19% Similarity=0.291 Sum_probs=38.3
Q ss_pred HHHHhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhhHhhhHHHHHHhhHhhHHhHHH
Q 024148 75 AEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQS 137 (272)
Q Consensus 75 aE~kak~ME~Ei~kLqK~Leek~eQL~as~~stEkyl~eLD~lRSQLs~TqATAeaSAaSAqs 137 (272)
|..|+-.+|..+..|.-+...+..++.+...-....=.+||.+..+|..++.-++.+.-....
T Consensus 12 a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~ 74 (143)
T PF12718_consen 12 AQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSN 74 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 334444455555555555555555555544444455578888888888888888777654433
No 52
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=76.12 E-value=1.4e+02 Score=33.39 Aligned_cols=45 Identities=29% Similarity=0.465 Sum_probs=28.3
Q ss_pred hhchhhhhhhHhhhhHHHH-HhHHHHHhhhhhhHHHHHHHHHHHHH
Q 024148 152 KNSSLKEHEDRVTRLGQQL-DNLQKDLQARESSQKQLKDEVFRIEQ 196 (272)
Q Consensus 152 K~~sLkEhE~rV~~lgeQL-d~LqK~LqaRE~SQkQLKDeVlriE~ 196 (272)
........+-+|..+.+|+ ..++..+.-++=--++|+.||-.+|.
T Consensus 370 ~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~ 415 (1074)
T KOG0250|consen 370 LKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEE 415 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555665 55556666666666688888888876
No 53
>PHA02562 46 endonuclease subunit; Provisional
Probab=75.23 E-value=76 Score=30.06 Aligned_cols=26 Identities=15% Similarity=0.249 Sum_probs=14.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHH
Q 024148 29 LLKDLNEKKQSFRKNVVSLAAELKEV 54 (272)
Q Consensus 29 LLkDL~EKK~sfRrnvvsLaaELK~~ 54 (272)
.|+++.......+.++..+..+++-.
T Consensus 256 ~L~~l~~~~~~~~~~l~~~~~~~~~~ 281 (562)
T PHA02562 256 ALNKLNTAAAKIKSKIEQFQKVIKMY 281 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35555555555566665555555544
No 54
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=75.20 E-value=45 Score=37.02 Aligned_cols=115 Identities=30% Similarity=0.400 Sum_probs=79.0
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhhHhhhHHHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhchhhhhhhHhh
Q 024148 85 EICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVT 164 (272)
Q Consensus 85 Ei~kLqK~Leek~eQL~as~~stEkyl~eLD~lRSQLs~TqATAeaSAaSAqsaqlqCl~L~keL~eK~~sLkEhE~rV~ 164 (272)
++.|++|.||-|+-.+.--....|+.-.++|.+-++++.-|.--||+-- .-..+.+|-+||=-| |+||.
T Consensus 397 d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlG--------AE~MV~qLtdknlnl---EekVk 465 (1243)
T KOG0971|consen 397 DHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALG--------AEEMVEQLTDKNLNL---EEKVK 465 (1243)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------HHHHHHHHHhhccCH---HHHHH
Confidence 4567888888888888888888888888888888888887777666421 123445566776544 78888
Q ss_pred hhHHHHHhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHH
Q 024148 165 RLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRK 215 (272)
Q Consensus 165 ~lgeQLd~LqK~LqaRE~SQkQLKDeVlriE~dIm~Avakag~~~d~El~k 215 (272)
.|.|-...| ++=+-=+.||-+---.+|.|.|+-+-++..++ -|+.+
T Consensus 466 lLeetv~dl----Ealee~~EQL~Esn~ele~DLreEld~~~g~~-kel~~ 511 (1243)
T KOG0971|consen 466 LLEETVGDL----EALEEMNEQLQESNRELELDLREELDMAKGAR-KELQK 511 (1243)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-HHHHH
Confidence 888877644 44444455676666678889998888884333 44443
No 55
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=74.62 E-value=1.3e+02 Score=32.58 Aligned_cols=96 Identities=21% Similarity=0.247 Sum_probs=60.5
Q ss_pred hhhhHHHHHHHhhhHhhhHHHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhchhhhhhhHhhhhHHHHHhHHHHHhhhhh
Q 024148 103 SACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARES 182 (272)
Q Consensus 103 s~~stEkyl~eLD~lRSQLs~TqATAeaSAaSAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~lgeQLd~LqK~LqaRE~ 182 (272)
++.-++.+..+++.+..-+..++.+.......-..++-++-.+-++-+.....|..-+.++..+.+|++.|+.-|....=
T Consensus 460 ~~~~~~e~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~p~~g 539 (1201)
T PF12128_consen 460 NPQYTEEEKEQLEQADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQLDPQKG 539 (1201)
T ss_pred CcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 44445556666666666666666666666555555666666666666666667777777777777888888777776666
Q ss_pred hHH-HHHHHHHHHHHHH
Q 024148 183 SQK-QLKDEVFRIEQDI 198 (272)
Q Consensus 183 SQk-QLKDeVlriE~dI 198 (272)
|.. -|+.++=--|..|
T Consensus 540 SL~~fL~~~~p~We~tI 556 (1201)
T PF12128_consen 540 SLLEFLRKNKPGWEQTI 556 (1201)
T ss_pred cHHHHHHhCCCcHHHHh
Confidence 644 3444444444443
No 56
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=73.73 E-value=1.3e+02 Score=32.06 Aligned_cols=25 Identities=32% Similarity=0.445 Sum_probs=14.6
Q ss_pred HHhhhhhhccchhHhhhh-------hhhhHHH
Q 024148 225 FERINKLLVVKDEEIHKL-------KDEIKIM 249 (272)
Q Consensus 225 ~e~inkll~~kD~eIakL-------rdeirim 249 (272)
-+.+.+++..||..|+.| .+||.-|
T Consensus 226 t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L 257 (775)
T PF10174_consen 226 TEALQTVIEEKDTKIASLERMLRDLEDEIYRL 257 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666666666666654 5555555
No 57
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=72.47 E-value=1.1e+02 Score=30.75 Aligned_cols=199 Identities=23% Similarity=0.299 Sum_probs=110.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHhhhhh-hhhh--------
Q 024148 32 DLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNG-RLQA-------- 102 (272)
Q Consensus 32 DL~EKK~sfRrnvvsLaaELK~~R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Leek~e-QL~a-------- 102 (272)
+|++-|..|=--+-+|-.++++++.-|..|.-.+.+=+..-+.+. -+|..+. -... -+.+
T Consensus 75 ~~d~vk~h~d~~i~~l~~~i~~~k~~~~~q~~~~~~~~~~~~~~~-------~~~~~~~----~~~~~~~~~~~~~~~~~ 143 (426)
T smart00806 75 ELDEVKKHIDDEIDTLQNELDEVKQALESQREAIQRLKERQQNSA-------ANIARPA----ASPSPVLASSSSAISLA 143 (426)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhcc-------cCccccc----CCCCccccccccccccc
Confidence 347778888888999999999999999888766654222111111 1111110 0000 0010
Q ss_pred --hhhhHHHHHHHhhhHhhhHHHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhchhhhhhhHhhhhHHHHHhHHHHHhhh
Q 024148 103 --SACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQAR 180 (272)
Q Consensus 103 --s~~stEkyl~eLD~lRSQLs~TqATAeaSAaSAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~lgeQLd~LqK~LqaR 180 (272)
+.+..--++.||-.||-.|++.+.|-...-..-+... +.+-+|.+.++.--.-++. +.=.-|.
T Consensus 144 ~~~~~~~~~~~~el~~lrrdLavlRQ~~~~~~~~~~~sm-------~~i~~k~~~~k~~~~~~~~-----~s~R~y~--- 208 (426)
T smart00806 144 NNPDKLNKEQRAELKSLQRELAVLRQTHNSFFTEIKESI-------KDILEKIDKFKSSSLSASG-----SSNRAYV--- 208 (426)
T ss_pred CCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhhccCC-----CcchHHH---
Confidence 0011124789999999999999988665544333222 2223333333332111110 0001111
Q ss_pred hhhHHHHHHHHHHH----H--HHHHHHHHHhcCCchhHHHHhhhccCcchHHhhhhhhccchhHhhhhhhhhHHHhhhcc
Q 024148 181 ESSQKQLKDEVFRI----E--QDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWK 254 (272)
Q Consensus 181 E~SQkQLKDeVlri----E--~dIm~Avakag~~~d~El~kil~evspkn~e~inkll~~kD~eIakLrdeirimSaHW~ 254 (272)
+.+++.|-++.-++ + .|||+++.|== -.==--++|+.++.++|.+..--.++.+|.+=|..--++|+
T Consensus 209 e~~k~kL~~~Sd~lltkVDDLQD~vE~LRkDV-------~~RgVRp~~~qLe~v~kdi~~a~keL~~m~~~i~~eKP~Wk 281 (426)
T smart00806 209 ESSKKKLSEDSDSLLTKVDDLQDIIEALRKDV-------AQRGVRPSKKQLETVQKELETARKELKKMEEYIDIEKPIWK 281 (426)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHH
Confidence 23444544442222 2 46777664320 00011368999999999999989999999999999999996
Q ss_pred chhhhhHHhhhh
Q 024148 255 LKTKELESQRSN 266 (272)
Q Consensus 255 ~KTKELEsQlek 266 (272)
|-.|+.|++
T Consensus 282 ---KiWE~EL~~ 290 (426)
T smart00806 282 ---KIWEAELDK 290 (426)
T ss_pred ---HHHHHHHHH
Confidence 445555543
No 58
>PRK03918 chromosome segregation protein; Provisional
Probab=72.22 E-value=1.1e+02 Score=30.70 Aligned_cols=18 Identities=33% Similarity=0.532 Sum_probs=7.2
Q ss_pred hhhhhhHhhhhHHHHHhH
Q 024148 156 LKEHEDRVTRLGQQLDNL 173 (272)
Q Consensus 156 LkEhE~rV~~lgeQLd~L 173 (272)
+.+-+-++..+.++++.+
T Consensus 682 ~~~l~~~i~~l~~~i~~~ 699 (880)
T PRK03918 682 LEELEKRREEIKKTLEKL 699 (880)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333344444444443
No 59
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=71.14 E-value=1.3e+02 Score=30.78 Aligned_cols=62 Identities=15% Similarity=0.283 Sum_probs=38.5
Q ss_pred HHHHHHhhHH--HHHHHhhchHHHHHHHHHHHhhhhhhhhhhhh---------hHHHHHHHhhhHhhhHHHHH
Q 024148 64 CFVKETLTRQ--EAEMKAKNMEDEICKLQKTLEERNGRLQASAC---------TAEKYLMQLDGLRSQLAATK 125 (272)
Q Consensus 64 ~~akEt~tRk--~aE~kak~ME~Ei~kLqK~Leek~eQL~as~~---------stEkyl~eLD~lRSQLs~Tq 125 (272)
.|..++..++ .+.+-..-+++++..+++.|++-..+|.++-. .++.++.++.+|+.|++..+
T Consensus 252 ~Yi~~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l~ 324 (726)
T PRK09841 252 NYLQQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELT 324 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444443 33334566777777777777776666665433 24557788888888877654
No 60
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=69.85 E-value=94 Score=29.36 Aligned_cols=24 Identities=8% Similarity=0.230 Sum_probs=13.3
Q ss_pred hhhhhhHhhhhHHHHHhHHHHHhh
Q 024148 156 LKEHEDRVTRLGQQLDNLQKDLQA 179 (272)
Q Consensus 156 LkEhE~rV~~lgeQLd~LqK~Lqa 179 (272)
+++.--.|..+..|++.+++.+..
T Consensus 270 y~~~hP~v~~l~~qi~~l~~~l~~ 293 (498)
T TIGR03007 270 YTDKHPDVIATKREIAQLEEQKEE 293 (498)
T ss_pred hcccChHHHHHHHHHHHHHHHHHh
Confidence 344445566666666666665543
No 61
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=68.77 E-value=1.6e+02 Score=30.92 Aligned_cols=134 Identities=22% Similarity=0.272 Sum_probs=69.4
Q ss_pred HHHHHHHhhhHhhhHHHHHHhhHhhHHhHHHHHH-------HHHHHHhhhhhhhchhhhhhhHhhhhHHHHHhHHHHHhh
Q 024148 107 AEKYLMQLDGLRSQLAATKATADASAASAQSAQL-------QCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQA 179 (272)
Q Consensus 107 tEkyl~eLD~lRSQLs~TqATAeaSAaSAqsaql-------qCl~L~keL~eK~~sLkEhE~rV~~lgeQLd~LqK~Lqa 179 (272)
.++-+++|+.++......+.+|+.-|.==.-+-= -|-.++..++.+.-.|.+=| +...+.|+.++..++.
T Consensus 574 ~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AE---r~~~~EL~~~~~~l~~ 650 (717)
T PF10168_consen 574 KEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAE---REFKKELERMKDQLQD 650 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHH---HHHHHHHHHHHHHHHH
Confidence 4466777777777777777777655531111111 12233333333322233222 1222233333333333
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHhhhccCcchHHhhhhhhccchhHhhhhhhhhHHHhhh
Q 024148 180 RESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAH 252 (272)
Q Consensus 180 RE~SQkQLKDeVlriE~dIm~Avakag~~~d~El~kil~evspkn~e~inkll~~kD~eIakLrdeirimSaH 252 (272)
=..+-.|+|...-+-+..|- .+....+.. -..|....+.|...|.=-.++|+.+..+|+=|..|
T Consensus 651 l~~si~~lk~k~~~Q~~~i~---~~~~~~~~s------~~L~~~Q~~~I~~iL~~~~~~I~~~v~~ik~i~~~ 714 (717)
T PF10168_consen 651 LKASIEQLKKKLDYQQRQIE---SQKSPKKKS------IVLSESQKRTIKEILKQQGEEIDELVKQIKNIKKI 714 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHh---ccccccCCC------ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344455544444333221 111111111 13577778899999999999999999999887765
No 62
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=68.62 E-value=88 Score=27.98 Aligned_cols=26 Identities=23% Similarity=0.450 Sum_probs=14.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhh
Q 024148 32 DLNEKKQSFRKNVVSLAAELKEVRTR 57 (272)
Q Consensus 32 DL~EKK~sfRrnvvsLaaELK~~R~r 57 (272)
++..+...+.-++..+-+++...+.-
T Consensus 78 ~~~~~l~~l~~~~~~l~a~~~~l~~~ 103 (423)
T TIGR01843 78 DVEADAAELESQVLRLEAEVARLRAE 103 (423)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666544433
No 63
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=68.40 E-value=91 Score=32.57 Aligned_cols=88 Identities=23% Similarity=0.311 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHhhhhhhhhh-------hhhhHHH-
Q 024148 38 QSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQA-------SACTAEK- 109 (272)
Q Consensus 38 ~sfRrnvvsLaaELK~~R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Leek~eQL~a-------s~~stEk- 109 (272)
.-+.+-|--|..+.++-..+|..-++. ++..+ .-|+.=|..+| +|..-|+.|..|-..+.- ..|.+|+
T Consensus 561 ~ei~~rv~~Lk~~~e~Ql~~L~~l~e~--~~~l~-~~ae~LaeR~e-~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~ 636 (717)
T PF10168_consen 561 EEIQRRVKLLKQQKEQQLKELQELQEE--RKSLR-ESAEKLAERYE-EAKDKQEKLMKRVDRVLQLLNSQLPVLSEAERE 636 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH-HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHH
Confidence 334444555555555444444432221 22221 22333334443 355556666665554322 3566776
Q ss_pred HHHHhhhHhhhHHHHHHhhH
Q 024148 110 YLMQLDGLRSQLAATKATAD 129 (272)
Q Consensus 110 yl~eLD~lRSQLs~TqATAe 129 (272)
|.+||+.++.+|..-++.-+
T Consensus 637 ~~~EL~~~~~~l~~l~~si~ 656 (717)
T PF10168_consen 637 FKKELERMKDQLQDLKASIE 656 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999877665433
No 64
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=68.10 E-value=1e+02 Score=28.55 Aligned_cols=36 Identities=11% Similarity=0.225 Sum_probs=22.4
Q ss_pred hhHHHHhhhccCcchHHhhhhhhccc-hhHhhhhhhh
Q 024148 210 DCELRKLLDEVSPKNFERINKLLVVK-DEEIHKLKDE 245 (272)
Q Consensus 210 d~El~kil~evspkn~e~inkll~~k-D~eIakLrde 245 (272)
-.+-..+-.+.+|.=|...-++..-+ +-.|+.++++
T Consensus 162 ~~~~~~L~~~l~~ell~~yeri~~~~kg~gvvpl~g~ 198 (239)
T COG1579 162 SSKREELKEKLDPELLSEYERIRKNKKGVGVVPLEGR 198 (239)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHhcCCCceEEeecCC
Confidence 34445566677777766666666555 6666666654
No 65
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=67.95 E-value=87 Score=28.54 Aligned_cols=59 Identities=22% Similarity=0.234 Sum_probs=34.0
Q ss_pred HHHHHHhhhHhhhHHHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhchhhhhhhHhhhhHHHHHhH
Q 024148 108 EKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNL 173 (272)
Q Consensus 108 Ekyl~eLD~lRSQLs~TqATAeaSAaSAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~lgeQLd~L 173 (272)
-+=.+|+=.||.||--+++..+++-. ++..|-..++.|+-.|..++..+.+.....+.|
T Consensus 27 ~~K~~Eiv~Lr~ql~e~~~~l~~~~~-------~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lL 85 (202)
T PF06818_consen 27 NQKDSEIVSLRAQLRELRAELRNKES-------QIQELQDSLRTKQLELEVCENELQRKKNEAELL 85 (202)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHhhHH-------HHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHh
Confidence 34567888888888877776655443 333344445566666666665554444333333
No 66
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=65.66 E-value=62 Score=25.12 Aligned_cols=63 Identities=22% Similarity=0.366 Sum_probs=39.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHh
Q 024148 32 DLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLE 94 (272)
Q Consensus 32 DL~EKK~sfRrnvvsLaaELK~~R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Le 94 (272)
.|..+...|+.+++....-|++.-.+...-.+...+|+..+..-+...+.+-.+|..|+....
T Consensus 36 ~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~ 98 (126)
T PF13863_consen 36 ELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEIS 98 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666667777776677766666666666666666666555555555555555554433
No 67
>PRK03918 chromosome segregation protein; Provisional
Probab=64.24 E-value=1.7e+02 Score=29.57 Aligned_cols=9 Identities=33% Similarity=0.479 Sum_probs=3.7
Q ss_pred hhhhhhhhH
Q 024148 239 IHKLKDEIK 247 (272)
Q Consensus 239 IakLrdeir 247 (272)
|..|+.++.
T Consensus 407 i~~l~~~~~ 415 (880)
T PRK03918 407 ISKITARIG 415 (880)
T ss_pred HHHHHHHHH
Confidence 444444433
No 68
>PRK11637 AmiB activator; Provisional
Probab=63.98 E-value=1.3e+02 Score=28.38 Aligned_cols=31 Identities=13% Similarity=0.235 Sum_probs=18.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 024148 32 DLNEKKQSFRKNVVSLAAELKEVRTRLASQE 62 (272)
Q Consensus 32 DL~EKK~sfRrnvvsLaaELK~~R~rLasQE 62 (272)
++.++...+++.+-.+-.++++++..+...+
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~ 74 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLL 74 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666666666555554433
No 69
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=63.86 E-value=30 Score=26.06 Aligned_cols=26 Identities=42% Similarity=0.661 Sum_probs=22.3
Q ss_pred hhH-HHHHHHhhchHHHHHHHHHHHhh
Q 024148 70 LTR-QEAEMKAKNMEDEICKLQKTLEE 95 (272)
Q Consensus 70 ~tR-k~aE~kak~ME~Ei~kLqK~Lee 95 (272)
..| ++||.+-+.++.||..|.+.+++
T Consensus 31 e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 31 ESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344 88999999999999999998875
No 70
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=63.54 E-value=1.8e+02 Score=30.86 Aligned_cols=74 Identities=23% Similarity=0.346 Sum_probs=49.3
Q ss_pred CCCCccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHhhh
Q 024148 19 SSVPAREIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEER 96 (272)
Q Consensus 19 ss~~~~elDPLLkDL~EKK~sfRrnvvsLaaELK~~R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Leek 96 (272)
..++..++++ +.=|.-|-..+-.-|..|.+|||..|.++..-+.-+..+. ..-+....+|.+.+..+.++..+.
T Consensus 344 ~~~ye~Di~~-~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek---~~~~~e~q~L~ekl~~lek~~re~ 417 (717)
T PF09730_consen 344 GDYYEVDING-LEILECKYKVAVSEVIQLKAELKALKSKYNELEERYKQEK---DRLESEVQNLKEKLMSLEKSSRED 417 (717)
T ss_pred cchhhhcccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4455555554 3335556666667788999999999999988777444332 334556677777777777765444
No 71
>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an
Probab=62.79 E-value=71 Score=28.33 Aligned_cols=100 Identities=17% Similarity=0.244 Sum_probs=66.8
Q ss_pred HHHHHHhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhhHhhhHHHHHHhhHhhHHhHHHHHHHHHHHHhhhhhh
Q 024148 73 QEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEK 152 (272)
Q Consensus 73 k~aE~kak~ME~Ei~kLqK~Leek~eQL~as~~stEkyl~eLD~lRSQLs~TqATAeaSAaSAqsaqlqCl~L~keL~eK 152 (272)
..+|.+-+.||.++.+|+|.+.-=-..+++...+.-.+...+.++-.-..... + ....-.+...+++|+.
T Consensus 14 ~~~e~~f~~~e~~~~kL~k~~k~y~da~~~l~~~q~~i~~~l~~lY~p~~~~~---~------~~~~~~y~~~v~~l~~- 83 (224)
T cd07591 14 EFEERRYRTMEKASTKLQKEAKGYLDSLRALTSSQARIAETISSFYGDAGDKD---G------AMLSQEYKQAVEELDA- 83 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc---H------hHHHHHHHHHHHHHHH-
Confidence 46889999999999999999998888888888888888777776654433210 0 0111234444555542
Q ss_pred hchhhhhhh--------HhhhhHHHHHhHHHHHhhhhhh
Q 024148 153 NSSLKEHED--------RVTRLGQQLDNLQKDLQARESS 183 (272)
Q Consensus 153 ~~sLkEhE~--------rV~~lgeQLd~LqK~LqaRE~S 183 (272)
.-..|++. |++++-.++..+++-+..|+--
T Consensus 84 -~~~~el~~~~~~~V~~Pl~~~~~~~~~i~k~IkKR~~K 121 (224)
T cd07591 84 -ETVKELDGPYRQTVLDPIGRFNSYFPEINEAIKKRNHK 121 (224)
T ss_pred -HHHHHHHhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Confidence 22334443 6677778888888877777654
No 72
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=62.63 E-value=65 Score=26.72 Aligned_cols=61 Identities=31% Similarity=0.479 Sum_probs=35.2
Q ss_pred ccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHhh
Q 024148 23 AREIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEE 95 (272)
Q Consensus 23 ~~elDPLLkDL~EKK~sfRrnvvsLaaELK~~R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Lee 95 (272)
..++|.-+.+|.+.-..++..+-.|-+||+..++.+... +.......++.|+..|..+|+.
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~------------el~~~i~~l~~e~~~l~~kL~~ 134 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNE------------ELREEIEELEEEIEELEEKLEK 134 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555555444333 3445566777788887777764
No 73
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=60.80 E-value=1.4e+02 Score=29.38 Aligned_cols=119 Identities=18% Similarity=0.302 Sum_probs=69.7
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHhhhhhhhhhhh
Q 024148 25 EIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASA 104 (272)
Q Consensus 25 elDPLLkDL~EKK~sfRrnvvsLaaELK~~R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Leek~eQL~as~ 104 (272)
..+-.++-+.+.-..+|..+..|..++...++.+- +|..|..|+. ++.--|...||+.|..+
T Consensus 209 ~~~~~l~~~~~el~eik~~~~~L~~~~e~Lk~~~~-~e~~~~~~~L--qEEr~R~erLEeqlNd~--------------- 270 (395)
T PF10267_consen 209 QQNLGLQKILEELREIKESQSRLEESIEKLKEQYQ-REYQFILEAL--QEERYRYERLEEQLNDL--------------- 270 (395)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH--HHhHHHHHHHHHHHHHH---------------
Confidence 34445555666667788889999999988887743 3444544443 45556666777777654
Q ss_pred hhHHHHHHHhhhHhhhHHHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhchhhhhhhHhhhhHHHHHhHHHHHh
Q 024148 105 CTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQ 178 (272)
Q Consensus 105 ~stEkyl~eLD~lRSQLs~TqATAeaSAaSAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~lgeQLd~LqK~Lq 178 (272)
+|-..+|+--|+..|+-+. .--+.|--.=++.++|--.+ +--||.+++ ...+|...+
T Consensus 271 --~elHq~Ei~~LKqeLa~~E----------EK~~Yqs~eRaRdi~E~~Es---~qtRisklE--~~~~Qq~~q 327 (395)
T PF10267_consen 271 --TELHQNEIYNLKQELASME----------EKMAYQSYERARDIWEVMES---CQTRISKLE--QQQQQQVVQ 327 (395)
T ss_pred --HHHHHHHHHHHHHHHHhHH----------HHHHHHHHHHHhHHHHHHHH---HHHHHHHHH--HHHhhhhhh
Confidence 4445567777777765432 12223333344555544333 445777777 335555533
No 74
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=60.78 E-value=37 Score=30.74 Aligned_cols=19 Identities=16% Similarity=0.281 Sum_probs=14.8
Q ss_pred ccchhhhhHHhhhhccccc
Q 024148 253 WKLKTKELESQRSNGEQIR 271 (272)
Q Consensus 253 W~~KTKELEsQlek~~~i~ 271 (272)
+.-|-++||+||..+..++
T Consensus 137 YesRI~dLE~~L~~~n~~~ 155 (196)
T PF15272_consen 137 YESRIADLERQLNSRNNSS 155 (196)
T ss_pred HHHHHHHHHHHHHHhcccC
Confidence 5667889999998776665
No 75
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=60.43 E-value=2.9e+02 Score=31.04 Aligned_cols=33 Identities=30% Similarity=0.513 Sum_probs=20.7
Q ss_pred HHhhhhhhhchhhhhhhHhhhhHHHHHhHHHHH
Q 024148 145 LVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDL 177 (272)
Q Consensus 145 L~keL~eK~~sLkEhE~rV~~lgeQLd~LqK~L 177 (272)
+--+.++.-++.++--..|..+..|+.++++.+
T Consensus 356 ~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~ 388 (1074)
T KOG0250|consen 356 LKEEIREIENSIRKLKKEVDRLEKQIADLEKQT 388 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566666666666666666666666666
No 76
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=60.31 E-value=99 Score=25.70 Aligned_cols=68 Identities=19% Similarity=0.359 Sum_probs=45.4
Q ss_pred ccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHh
Q 024148 23 AREIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLE 94 (272)
Q Consensus 23 ~~elDPLLkDL~EKK~sfRrnvvsLaaELK~~R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Le 94 (272)
+.-+---|+.+.....+++.-+..|.++=+.++.-+.. +..+...-+........++.++..|+.+.+
T Consensus 18 ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~----l~~~~e~~~~~~~~~~~L~~el~~l~~ry~ 85 (120)
T PF12325_consen 18 VERLQSQLRRLEGELASLQEELARLEAERDELREEIVK----LMEENEELRALKKEVEELEQELEELQQRYQ 85 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455667888888888888888888877777766665 444444445555556666777766666543
No 77
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=59.34 E-value=2.8e+02 Score=31.29 Aligned_cols=164 Identities=20% Similarity=0.296 Sum_probs=87.3
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhhHhhhHHHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhchhhhhhh
Q 024148 82 MEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHED 161 (272)
Q Consensus 82 ME~Ei~kLqK~Leek~eQL~as~~stEkyl~eLD~lRSQLs~TqATAeaSAaSAqsaqlqCl~L~keL~eK~~sLkEhE~ 161 (272)
.+.|+.-.|+.|++-..||..--.+..+| ++|+.||...+ +=++|.+. +-..++-.---+
T Consensus 682 ~~~~~~~~q~el~~le~eL~~le~~~~kf----~~l~~ql~l~~---------------~~l~l~~~-r~~~~e~~~~~~ 741 (1174)
T KOG0933|consen 682 AQKELRAIQKELEALERELKSLEAQSQKF----RDLKQQLELKL---------------HELALLEK-RLEQNEFHKLLD 741 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH---------------HHHHHHHH-HHhcChHhhHHH
Confidence 34455555666666666666666666666 45666665322 22333322 111222222223
Q ss_pred HhhhhHHHHHhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHhhhcc------CcchHHhhhhhhccc
Q 024148 162 RVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEV------SPKNFERINKLLVVK 235 (272)
Q Consensus 162 rV~~lgeQLd~LqK~LqaRE~SQkQLKDeVlriE~dIm~Avakag~~~d~El~kil~ev------spkn~e~inkll~~k 235 (272)
.+..+.+-+..++..+...+-.+++--|+|-.||.++-++.+-- .++-.++-|-+... +.++.++=-.....=
T Consensus 742 ~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~r-e~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l 820 (1174)
T KOG0933|consen 742 DLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANR-ERRLKDLEKEIKTAKQRAEESSKELEKRENEYERL 820 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444455556677777888999999999987543 34445555555432 333333221111111
Q ss_pred hhHhhhhhhhhHHHhhhccchhh---hhHHhhhh
Q 024148 236 DEEIHKLKDEIKIMSAHWKLKTK---ELESQRSN 266 (272)
Q Consensus 236 D~eIakLrdeirimSaHW~~KTK---ELEsQlek 266 (272)
--|+.-|.+||+-.-.+|...-+ .|++++.+
T Consensus 821 ~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~ 854 (1174)
T KOG0933|consen 821 QLEHEELEKEISSLKQQLEQLEKQISSLKSELGN 854 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24666778888888888876443 44455443
No 78
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=58.16 E-value=3e+02 Score=30.62 Aligned_cols=86 Identities=9% Similarity=0.178 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhHHHH--HHhhHHHHHHHhhchHHHHHHHHHHHhhhhhhhhhhhhhH-------H
Q 024148 38 QSFRKNVVSLAAELKEVRTRLASQEQCFVK--ETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTA-------E 108 (272)
Q Consensus 38 ~sfRrnvvsLaaELK~~R~rLasQEq~~ak--Et~tRk~aE~kak~ME~Ei~kLqK~Leek~eQL~as~~st-------E 108 (272)
..+++-+..-.+++++++.+|+...+.... ++.+...-|.+...-..++..+|+.+...|.+++.-..+. .
T Consensus 68 ~~~~~~i~~ap~~~~~~~~~l~~~~~~~~~~~~~~s~~~Leq~l~~~~~~L~~~q~~l~~~~~~~~~~~~~l~~~pq~~~ 147 (1109)
T PRK10929 68 KQYQQVIDNFPKLSAELRQQLNNERDEPRSVPPNMSTDALEQEILQVSSQLLEKSRQAQQEQDRAREISDSLSQLPQQQT 147 (1109)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhchhhHH
Confidence 445555555566666666666532111100 2222344566666666778888888888777774322222 2
Q ss_pred HHHHHhhhHhhhHHH
Q 024148 109 KYLMQLDGLRSQLAA 123 (272)
Q Consensus 109 kyl~eLD~lRSQLs~ 123 (272)
.-...+.+++.+|..
T Consensus 148 ~~~~~l~~i~~~L~~ 162 (1109)
T PRK10929 148 EARRQLNEIERRLQT 162 (1109)
T ss_pred HHHHHHHHHHHHHhC
Confidence 234566667766655
No 79
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=57.63 E-value=36 Score=26.25 Aligned_cols=69 Identities=22% Similarity=0.383 Sum_probs=40.3
Q ss_pred CCCCCccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHhhhh
Q 024148 18 SSSVPAREIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERN 97 (272)
Q Consensus 18 sss~~~~elDPLLkDL~EKK~sfRrnvvsLaaELK~~R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Leek~ 97 (272)
||+-+...|--+|+.|-.--.-++--.+-|+++++.. .+|.+ ..+-+.++.++..|-+.|+-|.
T Consensus 7 ~s~~p~~~Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~------------d~s~~----~~~R~~L~~~l~~lv~~mE~K~ 70 (79)
T PF06657_consen 7 PSQSPGEALSEVLKALQDEFGHMKMEHQELQDEYKQM------------DPSLG----RRKRRDLEQELEELVKRMEAKA 70 (79)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------------ccccC----hHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555566655544433333344444444332 22332 2345789999999999999999
Q ss_pred hhhhh
Q 024148 98 GRLQA 102 (272)
Q Consensus 98 eQL~a 102 (272)
.|+-.
T Consensus 71 dQI~~ 75 (79)
T PF06657_consen 71 DQIYK 75 (79)
T ss_pred HHHHH
Confidence 99853
No 80
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=57.50 E-value=1.4e+02 Score=26.39 Aligned_cols=198 Identities=24% Similarity=0.312 Sum_probs=100.7
Q ss_pred HHHHHHHhhhhhhhhHHHHHHhhHHH-HHHHhhchHHHHHHHHHHHhhhhhhhhhhhhhHH-HHHHHhhhHhhhHHHHH-
Q 024148 49 AELKEVRTRLASQEQCFVKETLTRQE-AEMKAKNMEDEICKLQKTLEERNGRLQASACTAE-KYLMQLDGLRSQLAATK- 125 (272)
Q Consensus 49 aELK~~R~rLasQEq~~akEt~tRk~-aE~kak~ME~Ei~kLqK~Leek~eQL~as~~stE-kyl~eLD~lRSQLs~Tq- 125 (272)
.=|.-+..++..-+..|..|...|+. =+.+...|-+-|++|.+.|+.-..+=.-+.-... .|-..+.++...+..--
T Consensus 5 ~KL~~i~e~~~~f~~~le~e~~~Rr~~ee~r~~~i~e~i~~Le~~l~~E~k~R~E~~~~lq~~~e~~i~~~~~~v~~~~~ 84 (247)
T PF06705_consen 5 SKLASINERFSGFESDLENEKRQRREQEEQRFQDIKEQIQKLEKALEAEVKRRVESNKKLQSKFEEQINNMQERVENQIS 84 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666778888888899999888854 4678899999999999988754332222222222 23355555554443221
Q ss_pred --HhhHhhHHhHHHHHHHHHHHHhhhhhhhchhhh-hhhHhhhhHHHHHhHHHHHhh----hhhhHH----HHHHHHHHH
Q 024148 126 --ATADASAASAQSAQLQCLALVKELDEKNSSLKE-HEDRVTRLGQQLDNLQKDLQA----RESSQK----QLKDEVFRI 194 (272)
Q Consensus 126 --ATAeaSAaSAqsaqlqCl~L~keL~eK~~sLkE-hE~rV~~lgeQLd~LqK~Lqa----RE~SQk----QLKDeVlri 194 (272)
...-.++. .+-.--|-.|-..+.+-..-+.. =+..-..|+.+|..|+..+.. |.-... .|.|.+.+|
T Consensus 85 ~~~~~~~~~l--~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~~R~erE~~i~krl~e~~~~l 162 (247)
T PF06705_consen 85 EKQEQLQSRL--DSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFENERNEREEREENILKRLEEEENRL 162 (247)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111 22233344444444432111111 122233455555555544432 222222 344445554
Q ss_pred HHHHHHHHHHhcCCchhHHHHhhhccCcchHHhhh-hhhccchhHhhhhhhhhHHHh
Q 024148 195 EQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERIN-KLLVVKDEEIHKLKDEIKIMS 250 (272)
Q Consensus 195 E~dIm~Avakag~~~d~El~kil~evspkn~e~in-kll~~kD~eIakLrdeirimS 250 (272)
..-|=... ......-.+|+..+++|.- +-++-| ++-+.==+||+-|++.|-.-+
T Consensus 163 ~~~i~~Ek-~~Re~~~~~l~~~le~~~~-~~~~~~e~f~~~v~~Ei~~lk~~l~~e~ 217 (247)
T PF06705_consen 163 QEKIEKEK-NTRESKLSELRSELEEVKR-RREKGDEQFQNFVLEEIAALKNALALES 217 (247)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433322 2234455677777776652 221221 233333478888888876544
No 81
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=57.19 E-value=3.2e+02 Score=30.57 Aligned_cols=117 Identities=23% Similarity=0.338 Sum_probs=73.5
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHh---hhhhhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHhhhhhhhhhh
Q 024148 27 DPLLKDLNEKKQSFRKNVVSLAAELKEVRT---RLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQAS 103 (272)
Q Consensus 27 DPLLkDL~EKK~sfRrnvvsLaaELK~~R~---rLasQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Leek~eQL~as 103 (272)
|-||||+.+--..+|+.|.+ +|. -.-+||+... +.--+++...+...||+||.-+.+.|.+.-+.+-.-
T Consensus 403 ~~llKd~~~EIerLK~dl~A-------aReKnGvyisee~y~~-~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~ 474 (1041)
T KOG0243|consen 403 KTLLKDLYEEIERLKRDLAA-------AREKNGVYISEERYTQ-EEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQ 474 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------hHhhCceEechHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 46899999988888877643 443 3556666543 333456777788888888888888887766655333
Q ss_pred hhhHHHHHHHhhhHhhhHHHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhchhhhhhhHhhh
Q 024148 104 ACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTR 165 (272)
Q Consensus 104 ~~stEkyl~eLD~lRSQLs~TqATAeaSAaSAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~ 165 (272)
.-..+..-.+++.+.++|.- .--+|..+-+++.+=..-|++++.-+.+
T Consensus 475 ~~~~~~l~~~~~~~k~~L~~--------------~~~el~~~~ee~~~~~~~l~~~e~ii~~ 522 (1041)
T KOG0243|consen 475 LEIKELLKEEKEKLKSKLQN--------------KNKELESLKEELQQAKATLKEEEEIISQ 522 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333555555555532 2235667777766666667777665543
No 82
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=56.19 E-value=43 Score=29.78 Aligned_cols=25 Identities=28% Similarity=0.500 Sum_probs=17.7
Q ss_pred HHHHHHhhchHHHHHHHHHHHhhhh
Q 024148 73 QEAEMKAKNMEDEICKLQKTLEERN 97 (272)
Q Consensus 73 k~aE~kak~ME~Ei~kLqK~Leek~ 97 (272)
..++.--+.||+||.+|.++++--+
T Consensus 116 ~~Vd~~~~eL~~eI~~L~~~i~~le 140 (171)
T PF04799_consen 116 QQVDQTKNELEDEIKQLEKEIQRLE 140 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666789999988887765433
No 83
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=55.73 E-value=78 Score=26.69 Aligned_cols=56 Identities=23% Similarity=0.312 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHhh-HHHHHHHhhchHHHHHHHHHHHhhhhhhh
Q 024148 45 VSLAAELKEVRTRLASQEQCFVKETLT-RQEAEMKAKNMEDEICKLQKTLEERNGRL 100 (272)
Q Consensus 45 vsLaaELK~~R~rLasQEq~~akEt~t-Rk~aE~kak~ME~Ei~kLqK~Leek~eQL 100 (272)
+++..++-..+.++..-..--...+.+ .+.-+.+.+..++||.+|.+.|+.++..+
T Consensus 121 ~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~ 177 (192)
T PF05529_consen 121 HSLIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEI 177 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 456666666665554222211111111 12233455667788888888887744433
No 84
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=55.56 E-value=62 Score=27.61 Aligned_cols=69 Identities=23% Similarity=0.317 Sum_probs=32.0
Q ss_pred chHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhhHhhhHHHHHHhhHhhHHhHHHHHHHHHHHHhhh
Q 024148 81 NMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKEL 149 (272)
Q Consensus 81 ~ME~Ei~kLqK~Leek~eQL~as~~stEkyl~eLD~lRSQLs~TqATAeaSAaSAqsaqlqCl~L~keL 149 (272)
.+..++.+|.+.+.++...|..-.......-.++.++...|..-..+-+.--.--.+-|+++..+-+.+
T Consensus 99 ~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~ 167 (194)
T PF08614_consen 99 ELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKL 167 (194)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555544444455556666666666555555555555566788887775553
No 85
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=55.31 E-value=56 Score=33.16 Aligned_cols=69 Identities=23% Similarity=0.327 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHhhhhhhhhhhhhhHHH-HHHHhhh
Q 024148 38 QSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEK-YLMQLDG 116 (272)
Q Consensus 38 ~sfRrnvvsLaaELK~~R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Leek~eQL~as~~stEk-yl~eLD~ 116 (272)
-.++-+|.-|.+++|+.|.+|+.- ...-+.+-.|-.+|+++..+-+.|++....+..+ +.+|.+.
T Consensus 55 DTP~DTlrTlva~~k~~r~~~~~l--------------~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~q 120 (472)
T TIGR03752 55 DTPADTLRTLVAEVKELRKRLAKL--------------ISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQ 120 (472)
T ss_pred CCccchHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHH
Confidence 478999999999999999998642 2222334455568888888888888776655332 3344444
Q ss_pred Hhhh
Q 024148 117 LRSQ 120 (272)
Q Consensus 117 lRSQ 120 (272)
|.++
T Consensus 121 l~~~ 124 (472)
T TIGR03752 121 LKSE 124 (472)
T ss_pred HHHH
Confidence 4444
No 86
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=54.83 E-value=1.9e+02 Score=27.33 Aligned_cols=20 Identities=10% Similarity=0.287 Sum_probs=9.1
Q ss_pred chHHHHHHHHHHHhhhhhhh
Q 024148 81 NMEDEICKLQKTLEERNGRL 100 (272)
Q Consensus 81 ~ME~Ei~kLqK~Leek~eQL 100 (272)
..|.++..|....-+.+.++
T Consensus 258 ~l~~~l~~l~~~y~~~hP~v 277 (498)
T TIGR03007 258 ALEKQLDALRLRYTDKHPDV 277 (498)
T ss_pred HHHHHHHHHHHHhcccChHH
Confidence 34444444444444444443
No 87
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.78 E-value=1.9e+02 Score=27.33 Aligned_cols=151 Identities=18% Similarity=0.312 Sum_probs=85.7
Q ss_pred CCCCCCCccccch-------hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHHH
Q 024148 16 SSSSSVPAREIDP-------LLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICK 88 (272)
Q Consensus 16 ~~sss~~~~elDP-------LLkDL~EKK~sfRrnvvsLaaELK~~R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~k 88 (272)
.|.++|+..-++- -|+++.+.+.-|-.-|-+|.+.+-+.-++.-+..--+.+.=..=+..+.+....++-|..
T Consensus 19 ~~~t~V~a~~~~~~i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~ 98 (265)
T COG3883 19 AFLTTVFAALLSDKIQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVE 98 (265)
T ss_pred hhcchhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666655544 567788888888888888888888887777666655554333334444444444444444
Q ss_pred HHHHHhhhhhhhhhhhhhHHHHHH------HhhhHhhhHHHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhchhhhhhhH
Q 024148 89 LQKTLEERNGRLQASACTAEKYLM------QLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDR 162 (272)
Q Consensus 89 LqK~Leek~eQL~as~~stEkyl~------eLD~lRSQLs~TqATAeaSAaSAqsaqlqCl~L~keL~eK~~sLkEhE~r 162 (272)
.++.|.+|---++.+-+++ .|+. -+-|+=+.+.+.....++-. .+++.+-+...+|.+-..-
T Consensus 99 r~~~l~~raRAmq~nG~~t-~Yidvil~SkSfsD~IsRvtAi~~iv~aDk-----------~ile~qk~dk~~Le~kq~~ 166 (265)
T COG3883 99 RQELLKKRARAMQVNGTAT-SYIDVILNSKSFSDLISRVTAISVIVDADK-----------KILEQQKEDKKSLEEKQAA 166 (265)
T ss_pred HHHHHHHHHHHHHHcCChh-HHHHHHHccCcHHHHHHHHHHHHHHHHHhH-----------HHHHHHHHHHHHHHHHHHH
Confidence 4555544444444443333 3873 44555555544443333322 3455555566666666666
Q ss_pred hhhhHHHHHhHHHHHh
Q 024148 163 VTRLGQQLDNLQKDLQ 178 (272)
Q Consensus 163 V~~lgeQLd~LqK~Lq 178 (272)
|+.=-++|--++.+++
T Consensus 167 l~~~~e~l~al~~e~e 182 (265)
T COG3883 167 LEDKLETLVALQNELE 182 (265)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6555555555555544
No 88
>PF14282 FlxA: FlxA-like protein
Probab=54.52 E-value=53 Score=26.14 Aligned_cols=34 Identities=26% Similarity=0.369 Sum_probs=20.2
Q ss_pred CCCCCCCCccccchhhhhhHHHHHHHHHHHHHHH
Q 024148 15 SSSSSSVPAREIDPLLKDLNEKKQSFRKNVVSLA 48 (272)
Q Consensus 15 ~~~sss~~~~elDPLLkDL~EKK~sfRrnvvsLa 48 (272)
++++++.+....|..++.|......+-.-+-.|.
T Consensus 6 s~~ss~~s~~~~~~~I~~L~~Qi~~Lq~ql~~l~ 39 (106)
T PF14282_consen 6 SSSSSSSSSGSSDSQIEQLQKQIKQLQEQLQELS 39 (106)
T ss_pred cccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444458888888887776655544443
No 89
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=54.45 E-value=1.5e+02 Score=26.05 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=14.1
Q ss_pred hhhhHhhhhHHHHHhHHHHHhhh
Q 024148 158 EHEDRVTRLGQQLDNLQKDLQAR 180 (272)
Q Consensus 158 EhE~rV~~lgeQLd~LqK~LqaR 180 (272)
.-|-+|++|..++|.|...|..-
T Consensus 194 ~aE~~v~~Le~~id~le~eL~~~ 216 (237)
T PF00261_consen 194 FAERRVKKLEKEIDRLEDELEKE 216 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456666667777766666543
No 90
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=53.78 E-value=1e+02 Score=23.91 Aligned_cols=21 Identities=19% Similarity=0.221 Sum_probs=11.7
Q ss_pred hHHHhhhccchhhhhHHhhhh
Q 024148 246 IKIMSAHWKLKTKELESQRSN 266 (272)
Q Consensus 246 irimSaHW~~KTKELEsQlek 266 (272)
+.=+...+..+..+|+++++.
T Consensus 168 ~~~l~~~l~~~~~~l~~~~~~ 188 (202)
T PF01442_consen 168 AEELKETLDQRIEELESSIDR 188 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444556666666666554
No 91
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=53.19 E-value=3.9e+02 Score=30.32 Aligned_cols=178 Identities=22% Similarity=0.274 Sum_probs=105.0
Q ss_pred hchHHHHHHHHHHHhhhhhhhhh----------hhhhHHHHH-HHhhhHhhhHHHHHHhhHhhHHh-------HHHHHHH
Q 024148 80 KNMEDEICKLQKTLEERNGRLQA----------SACTAEKYL-MQLDGLRSQLAATKATADASAAS-------AQSAQLQ 141 (272)
Q Consensus 80 k~ME~Ei~kLqK~Leek~eQL~a----------s~~stEkyl-~eLD~lRSQLs~TqATAeaSAaS-------Aqsaqlq 141 (272)
+.|.++|+.++-.+.++..-++. ..-.+..+. .+|.+|--.|-.+.+++++++.- -+.-++-
T Consensus 744 ~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE 823 (1174)
T KOG0933|consen 744 KELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLE 823 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777766666655544433 333333344 57888888888888888887753 3456777
Q ss_pred HHHHHhhhhhhhchhhhhhhHhhhhHHHHHhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHhhhccC
Q 024148 142 CLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVS 221 (272)
Q Consensus 142 Cl~L~keL~eK~~sLkEhE~rV~~lgeQLd~LqK~LqaRE~SQkQLKDeVlriE~dIm~Avakag~~~d~El~kil~evs 221 (272)
|-.|-+++.--...|..|+.....|..+++++.-.+..-+..++.+-.+|- .+++-|..+ |-|+.+++-+.-
T Consensus 824 ~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~-~~k~k~~~~-------dt~i~~~~~~~e 895 (1174)
T KOG0933|consen 824 HEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELK-DQKAKQRDI-------DTEISGLLTSQE 895 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHH-HHHHHHHhh-------hHHHhhhhhHHH
Confidence 888888877777788888888888888888777666665555544433332 222222222 222222221110
Q ss_pred cchHHhhhhhhccchhHhhhhhhhhHHHhhhccchhhhhHHhhhhcccc
Q 024148 222 PKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELESQRSNGEQI 270 (272)
Q Consensus 222 pkn~e~inkll~~kD~eIakLrdeirimSaHW~~KTKELEsQlek~~~i 270 (272)
-.=.++.+ --.++.+|--|+.-|.-.-..=.|++|+-+.||..|
T Consensus 896 ~~~~e~~~-----~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi 939 (1174)
T KOG0933|consen 896 KCLSEKSD-----GELERKKLEHEVTKLESEKANARKEVEKLLKKHEWI 939 (1174)
T ss_pred HHHHHhhc-----ccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccch
Confidence 00011111 113566666677666666666677888888887765
No 92
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=53.18 E-value=2.6e+02 Score=28.26 Aligned_cols=33 Identities=18% Similarity=0.099 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Q 024148 33 LNEKKQSFRKNVVSLAAELKEVRTRLASQEQCF 65 (272)
Q Consensus 33 L~EKK~sfRrnvvsLaaELK~~R~rLasQEq~~ 65 (272)
+..|....++-..||...|.+.|.+|...|.-+
T Consensus 185 ~~~k~~~~~~a~~~L~~ql~~l~~~l~~aE~~l 217 (754)
T TIGR01005 185 GAAKSESNTAAADFLAPEIADLSKQSRDAEAEV 217 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666777777777777776665443
No 93
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=53.12 E-value=1.6e+02 Score=25.96 Aligned_cols=53 Identities=19% Similarity=0.269 Sum_probs=32.5
Q ss_pred HHHHHHHhhchHHHHHHHHHH-------HhhhhhhhhhhhhhHHHHHHHhhhHhhhHHHH
Q 024148 72 RQEAEMKAKNMEDEICKLQKT-------LEERNGRLQASACTAEKYLMQLDGLRSQLAAT 124 (272)
Q Consensus 72 Rk~aE~kak~ME~Ei~kLqK~-------Leek~eQL~as~~stEkyl~eLD~lRSQLs~T 124 (272)
.+..|...+.+|..|..||.. .++.+-.+...-+.++..-.++.+.+.+-..|
T Consensus 126 ~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~~ 185 (190)
T PF05266_consen 126 LKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQSV 185 (190)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666553 45555556666666666777777777766554
No 94
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=52.53 E-value=1.1e+02 Score=23.76 Aligned_cols=87 Identities=20% Similarity=0.343 Sum_probs=59.1
Q ss_pred hchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhhHhhhHHHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhchhhhh
Q 024148 80 KNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEH 159 (272)
Q Consensus 80 k~ME~Ei~kLqK~Leek~eQL~as~~stEkyl~eLD~lRSQLs~TqATAeaSAaSAqsaqlqCl~L~keL~eK~~sLkEh 159 (272)
..+++.+..=.+.|.++..+|..+...-++|+++.+.=|.. |.-.|........++-.-+++|......|+
T Consensus 24 ~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~r-------A~k~a~~e~k~~~~k~~ei~~l~~~l~~l~-- 94 (126)
T PF13863_consen 24 ERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRER-------AEKRAEEEKKKKEEKEAEIKKLKAELEELK-- 94 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 34556666677888999999999999999999998865543 333444445556666666666666655555
Q ss_pred hhHhhhhHHHHHhHHHH
Q 024148 160 EDRVTRLGQQLDNLQKD 176 (272)
Q Consensus 160 E~rV~~lgeQLd~LqK~ 176 (272)
....+++++|..+++|
T Consensus 95 -~~~~k~e~~l~~~~~Y 110 (126)
T PF13863_consen 95 -SEISKLEEKLEEYKKY 110 (126)
T ss_pred -HHHHHHHHHHHHHHHH
Confidence 4456666666666555
No 95
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=51.90 E-value=3e+02 Score=28.74 Aligned_cols=57 Identities=25% Similarity=0.442 Sum_probs=44.1
Q ss_pred HHhhhhhhhchhhhhhhHhhhhHHHHHhHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 024148 145 LVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQT 201 (272)
Q Consensus 145 L~keL~eK~~sLkEhE~rV~~lgeQLd~LqK~LqaRE~SQkQLKDeVlriE~dIm~A 201 (272)
+.+.+.....-+.+-..++..+.++++.+.+.+.-=.-...+++..+..++..|...
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 443 (908)
T COG0419 387 LEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQL 443 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566667777888888999999998877766666668888899999999883
No 96
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=51.72 E-value=96 Score=31.57 Aligned_cols=64 Identities=25% Similarity=0.210 Sum_probs=43.6
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHhhH--HHHHHHh-----hchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHH
Q 024148 48 AAELKEVRTRLASQEQCFVKETLTR--QEAEMKA-----KNMEDEICKLQKTLEERNGRLQASACTAEKYLM 112 (272)
Q Consensus 48 aaELK~~R~rLasQEq~~akEt~tR--k~aE~ka-----k~ME~Ei~kLqK~Leek~eQL~as~~stEkyl~ 112 (272)
.+-|-+++.+||.+|+-...=+..+ .+||.++ ---|-|+.+||+..-+.|+..-+ ..+|++|+.
T Consensus 12 dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~-~~a~~~~~t 82 (459)
T KOG0288|consen 12 DQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVR-EEATEKTLT 82 (459)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 3445677888887776554333332 4555544 34688999999999998888766 777888773
No 97
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=51.64 E-value=1.1e+02 Score=34.35 Aligned_cols=75 Identities=23% Similarity=0.313 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhhHhhhHHH
Q 024148 45 VSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAA 123 (272)
Q Consensus 45 vsLaaELK~~R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Leek~eQL~as~~stEkyl~eLD~lRSQLs~ 123 (272)
-.|+.||-+++.++.--+|-+-.-+.+=..-+.-.--||-||.+|+-. ++.+..-+-++..|..|||.||-+-.+
T Consensus 173 ~hL~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe----~~e~l~ea~ra~~yrdeldalre~aer 247 (1195)
T KOG4643|consen 173 LHLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQE----IEEFLDEAHRADRYRDELDALREQAER 247 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhhhhhhHHHHHHHhhhc
Confidence 467778877777776655554443444344444555666677666544 344556667778899999999987543
No 98
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=50.51 E-value=2.7e+02 Score=27.69 Aligned_cols=64 Identities=23% Similarity=0.255 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc--CCchhHHHHhhhccCcchHHhhhhhhccchhHhhhhhhhhHHH
Q 024148 185 KQLKDEVFRIEQDIMQTIAKAG--VNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIM 249 (272)
Q Consensus 185 kQLKDeVlriE~dIm~Avakag--~~~d~El~kil~evspkn~e~inkll~~kD~eIakLrdeirim 249 (272)
-.|..++.++-.+|--+.+.-. .....++...|..++. -.+..++-...--.|+.+++.||.-.
T Consensus 340 ~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~-Eae~Ak~ea~~~~~E~~~~k~E~e~~ 405 (522)
T PF05701_consen 340 SSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSS-EAEEAKKEAEEAKEEVEKAKEEAEQT 405 (522)
T ss_pred hhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555432222222 1223344445554443 23444555555556777777666543
No 99
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=50.46 E-value=1.4e+02 Score=24.55 Aligned_cols=70 Identities=20% Similarity=0.231 Sum_probs=50.8
Q ss_pred cccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHH
Q 024148 24 REIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTL 93 (272)
Q Consensus 24 ~elDPLLkDL~EKK~sfRrnvvsLaaELK~~R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~L 93 (272)
.+.......|...+..+-+.+.....-|...+.-+...|..+.++...-+.=+.+++..+.|+.+..+.+
T Consensus 16 ~~~~~~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~ 85 (160)
T PF13094_consen 16 REDSFDYEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKA 85 (160)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3333445566677777777766666666677788888888888888888888888888888877766654
No 100
>PRK09039 hypothetical protein; Validated
Probab=49.84 E-value=2.3e+02 Score=26.76 Aligned_cols=6 Identities=17% Similarity=0.468 Sum_probs=3.0
Q ss_pred HHHHHH
Q 024148 186 QLKDEV 191 (272)
Q Consensus 186 QLKDeV 191 (272)
++|.++
T Consensus 194 ~~~~~~ 199 (343)
T PRK09039 194 RYRSEF 199 (343)
T ss_pred HhHHHH
Confidence 455554
No 101
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=49.78 E-value=1.5e+02 Score=24.70 Aligned_cols=35 Identities=37% Similarity=0.534 Sum_probs=26.0
Q ss_pred HhHHHHHHHHHHHHhhhhhhhchhhhhhhHhhhhHHHH
Q 024148 133 ASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQL 170 (272)
Q Consensus 133 aSAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~lgeQL 170 (272)
..+++-|=-=+.|++.+++|+..++. |++.||+..
T Consensus 80 ~~~q~EldDLL~ll~Dle~K~~kyk~---rLk~LG~eV 114 (136)
T PF04871_consen 80 KEAQSELDDLLVLLGDLEEKRKKYKE---RLKELGEEV 114 (136)
T ss_pred HhhhhhHHHHHHHHHhHHHHHHHHHH---HHHHcCCCc
Confidence 35577777778899999999988764 666666544
No 102
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=48.81 E-value=3.7e+02 Score=28.84 Aligned_cols=101 Identities=22% Similarity=0.296 Sum_probs=54.8
Q ss_pred HHHHHhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhhHhhhHHHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhh
Q 024148 74 EAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKN 153 (272)
Q Consensus 74 ~aE~kak~ME~Ei~kLqK~Leek~eQL~as~~stEkyl~eLD~lRSQLs~TqATAeaSAaSAqsaqlqCl~L~keL~eK~ 153 (272)
+-+.+...|+.|-..|.-+|..-..||+.+-.--.-.=..|..|+++|..++... ++.-.|+.|..-..+-= .
T Consensus 593 el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~-----s~~E~ql~~~~e~~e~l--e 665 (769)
T PF05911_consen 593 ELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESN-----SLAETQLKAMKESYESL--E 665 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH--h
Confidence 3444555666666666665655555665555444444456677888888554432 34556888874443311 1
Q ss_pred chhhhhhhHhhhhHHHHHhHHHHHhhhh
Q 024148 154 SSLKEHEDRVTRLGQQLDNLQKDLQARE 181 (272)
Q Consensus 154 ~sLkEhE~rV~~lgeQLd~LqK~LqaRE 181 (272)
.-+++-|--++.+-.....|.-.|+...
T Consensus 666 ~~~~~~e~E~~~l~~Ki~~Le~Ele~er 693 (769)
T PF05911_consen 666 TRLKDLEAEAEELQSKISSLEEELEKER 693 (769)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122224445555556666666555443
No 103
>PTZ00491 major vault protein; Provisional
Probab=48.79 E-value=4e+02 Score=29.22 Aligned_cols=43 Identities=26% Similarity=0.290 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCchhHHHHhh--------hccCcchHHhh
Q 024148 186 QLKDEVFRIEQDIMQTIAKAGVNKDCELRKLL--------DEVSPKNFERI 228 (272)
Q Consensus 186 QLKDeVlriE~dIm~Avakag~~~d~El~kil--------~evspkn~e~i 228 (272)
.++.-|-.|=.|-..|+|+||...--.|+.=| |--||=|.=++
T Consensus 789 kf~~~v~aig~~T~~~iA~agpe~qaklL~~LGl~~~litDG~sPiNLf~t 839 (850)
T PTZ00491 789 KFERIVEALGRETLIAIARAGPELQAKLLGGLGLKGYLVTDGKSPINLFNT 839 (850)
T ss_pred HHHHHHHhhChHHHHHHHHhCcHhHHHHHhhcCCceEEeecCCCchhHHhh
Confidence 56667888899999999999988777777643 56677775443
No 104
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=48.57 E-value=3.8e+02 Score=28.87 Aligned_cols=76 Identities=8% Similarity=0.121 Sum_probs=48.8
Q ss_pred HHHHHhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHhhhccCcchHHhhhhhhccchhHhhhhhh
Q 024148 167 GQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKD 244 (272)
Q Consensus 167 geQLd~LqK~LqaRE~SQkQLKDeVlriE~dIm~Avakag~~~d~El~kil~evspkn~e~inkll~~kD~eIakLrd 244 (272)
..++..++..+.+-.-....+..++......+..+++..|+...-.+..++ .++...+.+..-+.--++.++.++.
T Consensus 723 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~f~~~~~~~~~~--~~~~~~~~l~~~i~~~~~~~~~~~~ 798 (1047)
T PRK10246 723 HEQCLSLHSQLQTLQQQDVLEAQRLQKAQAQFDTALQASVFDDQQAFLAAL--LDEETLTQLEQLKQNLENQRQQAQT 798 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHc--CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555545555566777778888889999999998888887766 6666666665544444444444443
No 105
>PRK11519 tyrosine kinase; Provisional
Probab=48.15 E-value=3.2e+02 Score=27.93 Aligned_cols=49 Identities=16% Similarity=0.200 Sum_probs=26.2
Q ss_pred HHHHhhchHHHHHHHHHHHhhhhhhhhhhhh---------hHHHHHHHhhhHhhhHHH
Q 024148 75 AEMKAKNMEDEICKLQKTLEERNGRLQASAC---------TAEKYLMQLDGLRSQLAA 123 (272)
Q Consensus 75 aE~kak~ME~Ei~kLqK~Leek~eQL~as~~---------stEkyl~eLD~lRSQLs~ 123 (272)
+..-..-+++++.++++.|++-...|.++-. .++.++..+.++++|+..
T Consensus 265 a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~vd~~~ea~~~l~~~~~l~~ql~~ 322 (719)
T PRK11519 265 ASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQLNE 322 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 3334445666666666666655555544322 233455666666666654
No 106
>PF13166 AAA_13: AAA domain
Probab=48.13 E-value=2.8e+02 Score=27.32 Aligned_cols=89 Identities=19% Similarity=0.290 Sum_probs=42.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHh-----hHHHHHHHhhchHHHHHHHHHHHhhhhhh---h
Q 024148 29 LLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETL-----TRQEAEMKAKNMEDEICKLQKTLEERNGR---L 100 (272)
Q Consensus 29 LLkDL~EKK~sfRrnvvsLaaELK~~R~rLasQEq~~akEt~-----tRk~aE~kak~ME~Ei~kLqK~Leek~eQ---L 100 (272)
.+..++..-..+-+-+..+..++..++.++..-..--..... ..+..+.....++.++..++..+.....+ |
T Consensus 371 ~i~~~n~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l 450 (712)
T PF13166_consen 371 IIDELNELIEEHNEKIDNLKKEQNELKDKLWLHLIAKLKEDIEEYQKEIKELEKEINSLEKKLKKAKEEIKKIEKEIKEL 450 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555666666667777777777666443221111111 11223334445555555554443333332 4
Q ss_pred hhhhhhH----HHHHHHhhhH
Q 024148 101 QASACTA----EKYLMQLDGL 117 (272)
Q Consensus 101 ~as~~st----Ekyl~eLD~l 117 (272)
++....+ +.|-++|..+
T Consensus 451 ~~~~~~~~~~~~~iN~~L~~~ 471 (712)
T PF13166_consen 451 EAQLKNTEPAADRINEELKRL 471 (712)
T ss_pred HHHHhhhHHHHHHHHHHHHHh
Confidence 4443333 4444556655
No 107
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=48.11 E-value=1.7e+02 Score=24.59 Aligned_cols=82 Identities=23% Similarity=0.402 Sum_probs=48.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH-HHhhHHHHHHHhhchHHHHHHHHHHHhhhhhhhhhhhhhHH
Q 024148 30 LKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVK-ETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAE 108 (272)
Q Consensus 30 LkDL~EKK~sfRrnvvsLaaELK~~R~rLasQEq~~ak-Et~tRk~aE~kak~ME~Ei~kLqK~Leek~eQL~as~~stE 108 (272)
+.+|.-|-..+=..|-.+-..|+++...|..-+..+.. |+.+ .|..-||+|+-...+.|.+-.+.|+-....++
T Consensus 37 I~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~-----rriq~LEeele~ae~~L~e~~ekl~e~d~~ae 111 (143)
T PF12718_consen 37 ITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLN-----RRIQLLEEELEEAEKKLKETTEKLREADVKAE 111 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHH-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34455555555555555555555555555555554442 4333 34556777777777777777777777666666
Q ss_pred HHHHHhhh
Q 024148 109 KYLMQLDG 116 (272)
Q Consensus 109 kyl~eLD~ 116 (272)
.|-.-+..
T Consensus 112 ~~eRkv~~ 119 (143)
T PF12718_consen 112 HFERKVKA 119 (143)
T ss_pred HHHHHHHH
Confidence 66544333
No 108
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=47.60 E-value=1.5e+02 Score=25.45 Aligned_cols=71 Identities=21% Similarity=0.344 Sum_probs=46.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHhhhhhhhhh
Q 024148 29 LLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQA 102 (272)
Q Consensus 29 LLkDL~EKK~sfRrnvvsLaaELK~~R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Leek~eQL~a 102 (272)
.|.+|...=..+..+|-.+..+|++-|.+|..-...|..-.. .+.......--+|..|++.+++-++++.+
T Consensus 111 ~i~~L~~~i~~~q~~~~~~i~~L~~f~~~l~~D~~~l~~~~~---~l~~~l~~~~g~I~~L~~~I~~~~~~I~~ 181 (184)
T PF05791_consen 111 IIEDLQDQIQKNQDKVQALINELNDFKDKLQKDSRNLKTDVD---ELQSILAGENGDIPQLQKQIENLNEEIKK 181 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHTT--HHHHHHHHHHHTGGG-G
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHhcccCCHHHHHHHHHHHHHHHHh
Confidence 356666777777788888888888888888887777764432 24555555556677777777666665543
No 109
>PRK10884 SH3 domain-containing protein; Provisional
Probab=47.40 E-value=2.1e+02 Score=25.58 Aligned_cols=29 Identities=21% Similarity=0.398 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 024148 39 SFRKNVVSLAAELKEVRTRLASQEQCFVK 67 (272)
Q Consensus 39 sfRrnvvsLaaELK~~R~rLasQEq~~ak 67 (272)
+.|-=+-.|-+||++++.+|+...+.+.+
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~~~~~~~~ 118 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNNIDNTWNQ 118 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 45555666778889999998887766553
No 110
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=46.30 E-value=2.3e+02 Score=28.44 Aligned_cols=16 Identities=25% Similarity=0.526 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHhhhhh
Q 024148 83 EDEICKLQKTLEERNG 98 (272)
Q Consensus 83 E~Ei~kLqK~Leek~e 98 (272)
|.++.+....|..|.+
T Consensus 75 e~rL~qrE~rL~qRee 90 (514)
T TIGR03319 75 RNELQRLERRLLQREE 90 (514)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 111
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=46.09 E-value=88 Score=27.99 Aligned_cols=59 Identities=14% Similarity=0.242 Sum_probs=43.3
Q ss_pred hhhhHhhhhHHHHHhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHhhhccCcchHHhhhhhh
Q 024148 158 EHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLL 232 (272)
Q Consensus 158 EhE~rV~~lgeQLd~LqK~LqaRE~SQkQLKDeVlriE~dIm~Avakag~~~d~El~kil~evspkn~e~inkll 232 (272)
-+|-.+.++..|+++|+.-+-+=|.+ .+..++++|...+ +..|.++..+++ +++|.+++
T Consensus 78 ~~E~ql~q~~~ql~nLEq~~~~iE~a---------~~~~ev~~aLk~g----~~aLK~~~k~~~---idkVd~lm 136 (191)
T PTZ00446 78 LYEQEIENILNNRLTLEDNMINLENM---------HLHKIAVNALSYA----ANTHKKLNNEIN---TQKVEKII 136 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHH----HHHHHHHHhcCC---HHHHHHHH
Confidence 46778899999999999888777766 4778888888554 456777887774 44444444
No 112
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=44.84 E-value=1.9e+02 Score=24.35 Aligned_cols=78 Identities=23% Similarity=0.359 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhhHhhhH
Q 024148 42 KNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQL 121 (272)
Q Consensus 42 rnvvsLaaELK~~R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Leek~eQL~as~~stEkyl~eLD~lRSQL 121 (272)
|.|..|+..+.+ .=++-.+.-.+.+... -++.|.||.++.++-..+.++...+-..+. .+.+++++-.+|
T Consensus 27 ~~~l~Lc~R~Q~-HL~~cA~~Va~~Q~~L-----~~riKevd~~~~~l~~~~~erqk~~~k~ae----~L~kv~els~~L 96 (131)
T PF10158_consen 27 RPVLRLCSRYQE-HLNQCAEAVAFDQNAL-----AKRIKEVDQEIAKLLQQMVERQKRFAKFAE----QLEKVNELSQQL 96 (131)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 567777777765 2222233333333333 267899999999999999999887766554 455688888888
Q ss_pred HHHHHhhH
Q 024148 122 AATKATAD 129 (272)
Q Consensus 122 s~TqATAe 129 (272)
..+|..=+
T Consensus 97 ~~~~~lL~ 104 (131)
T PF10158_consen 97 SRCQSLLN 104 (131)
T ss_pred HHHHHHHH
Confidence 87776433
No 113
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=43.84 E-value=1.6e+02 Score=29.75 Aligned_cols=68 Identities=24% Similarity=0.319 Sum_probs=52.7
Q ss_pred HhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhhHhhhHHHHH
Q 024148 55 RTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATK 125 (272)
Q Consensus 55 R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Leek~eQL~as~~stEkyl~eLD~lRSQLs~Tq 125 (272)
..++..--+.|.+|-. ..-.+.+.++..|.+|+++-++-..+|.+....|..++.+.+.|+.|...++
T Consensus 26 E~~~l~~~~~~L~~f~---~v~~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~~~L~~~~~~~~ 93 (618)
T PF06419_consen 26 EKRLLKINQEFLKEFS---PVNRQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEASELREQKEELE 93 (618)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444554443 3567888999999999999999999999999999999999999988876554
No 114
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=43.52 E-value=6e+02 Score=29.76 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=10.3
Q ss_pred HHHHhhchHHHHHHHHHHHhh
Q 024148 75 AEMKAKNMEDEICKLQKTLEE 95 (272)
Q Consensus 75 aE~kak~ME~Ei~kLqK~Lee 95 (272)
||..+-+|-.-+.+|.+.+++
T Consensus 1610 aE~~~~~a~q~~~eL~~~~e~ 1630 (1758)
T KOG0994|consen 1610 AEKLATSATQQLGELETRMEE 1630 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555444443
No 115
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=42.56 E-value=5.3e+02 Score=28.83 Aligned_cols=52 Identities=21% Similarity=0.253 Sum_probs=32.4
Q ss_pred HHHhhhHhhhHHHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhchhhhhhhH
Q 024148 111 LMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDR 162 (272)
Q Consensus 111 l~eLD~lRSQLs~TqATAeaSAaSAqsaqlqCl~L~keL~eK~~sLkEhE~r 162 (272)
..+|+.++.|+......++..+..+..++-+--.+-.++++-...+.+-+..
T Consensus 332 ~~eL~el~~ql~~~~~~a~~~~~~~~~a~~~~e~~~~~~~~~~~r~~~~~~~ 383 (1353)
T TIGR02680 332 AEELERARADAEALQAAAADARQAIREAESRLEEERRRLDEEAGRLDDAERE 383 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5888888888887777777666666666655555555555433333333333
No 116
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=42.31 E-value=3.1e+02 Score=26.13 Aligned_cols=23 Identities=30% Similarity=0.590 Sum_probs=16.2
Q ss_pred hhchHHHHHHHHHHHhhhhhhhh
Q 024148 79 AKNMEDEICKLQKTLEERNGRLQ 101 (272)
Q Consensus 79 ak~ME~Ei~kLqK~Leek~eQL~ 101 (272)
...||.+|..|.+.+.++.+.|.
T Consensus 274 i~~~e~~i~~L~~ai~~k~~~lk 296 (384)
T PF03148_consen 274 IAEMEKNIEDLEKAIRDKEGPLK 296 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHH
Confidence 45567777777777777777664
No 117
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=40.83 E-value=53 Score=29.65 Aligned_cols=67 Identities=15% Similarity=0.182 Sum_probs=49.2
Q ss_pred HhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhhHhhhH
Q 024148 55 RTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQL 121 (272)
Q Consensus 55 R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Leek~eQL~as~~stEkyl~eLD~lRSQL 121 (272)
..|++..|+.+..-+..--+-..+...|..||.+|.-.+|+-+.||+--.----.+-.+||.+.+++
T Consensus 39 ~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~~~~ 105 (263)
T PRK10803 39 EDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLSSGG 105 (263)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4667767766654444334456677889999999999999988888876666666778999977655
No 118
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=40.28 E-value=5.7e+02 Score=28.58 Aligned_cols=167 Identities=21% Similarity=0.254 Sum_probs=71.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHH
Q 024148 33 LNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLM 112 (272)
Q Consensus 33 L~EKK~sfRrnvvsLaaELK~~R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Leek~eQL~as~~stEkyl~ 112 (272)
|.||---||-+=+.|-.-.+|+--.|.+++++.. .++..-.++.+-|-+++.....-+--.+.-+..-+++-.
T Consensus 429 lkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~-------~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~ 501 (980)
T KOG0980|consen 429 LKEKYTELRQEHADLLRKYDDIQKQLESAEQSID-------DVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQ 501 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3444445555555566666666666666666544 233333344444444443333322222222233333445
Q ss_pred HhhhHhhhHHHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhchhhhhhhHh-----hhhHHHHHhHHHHHhhhhhhHHHH
Q 024148 113 QLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRV-----TRLGQQLDNLQKDLQARESSQKQL 187 (272)
Q Consensus 113 eLD~lRSQLs~TqATAeaSAaSAqsaqlqCl~L~keL~eK~~sLkEhE~rV-----~~lgeQLd~LqK~LqaRE~SQkQL 187 (272)
||.-+--++...|-+-.-++ .+..++++ -|...|.+|+.-+.+--.+. .++.-|-+..|-.|..++.++-+.
T Consensus 502 El~~l~~e~~~lq~~~~~~~-qs~~~~~~--~l~~~l~~KD~~~~~~~~~~~e~~~~~~e~e~si~ql~l~~~~~~ea~~ 578 (980)
T KOG0980|consen 502 ELALLLIELEELQRTLSNLA-QSHNNQLA--QLEDLLKQKDRLAAELVAREEEREALRLEAERSINQLELDSSASTEAGI 578 (980)
T ss_pred HHHHHHHHHHHHHHHhhhHH-HHHHHHHH--HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcccccchHHHH
Confidence 55544444444444422222 22233332 23445566666554422222 122222222222333333333222
Q ss_pred HHHHHHHHHHHHHHHHHhcCCc
Q 024148 188 KDEVFRIEQDIMQTIAKAGVNK 209 (272)
Q Consensus 188 KDeVlriE~dIm~Avakag~~~ 209 (272)
.---...--+|.++++..|.+.
T Consensus 579 tQ~~~~~~~~il~~~~~~~~q~ 600 (980)
T KOG0980|consen 579 TQLQDDLNDPILDGSLASGIQA 600 (980)
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 2111122247778887777543
No 119
>PRK10884 SH3 domain-containing protein; Provisional
Probab=39.93 E-value=2.8e+02 Score=24.83 Aligned_cols=25 Identities=12% Similarity=0.323 Sum_probs=15.8
Q ss_pred HHHHhhchHHHHHHHHHHHhhhhhh
Q 024148 75 AEMKAKNMEDEICKLQKTLEERNGR 99 (272)
Q Consensus 75 aE~kak~ME~Ei~kLqK~Leek~eQ 99 (272)
+-.+...+|.|+.+|+..|.+-+.+
T Consensus 91 ~~~rlp~le~el~~l~~~l~~~~~~ 115 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNNIDNT 115 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3445566777777777777664433
No 120
>cd08784 Death_DRs Death Domain of Death Receptors. Death domain (DD) found in death receptor proteins. Death receptors are members of the tumor necrosis factor (TNF) receptor superfamily, characterized by having a cytoplasmic DD. Known members of the family are Fas (CD95/APO-1), TNF-receptor 1 (TNFR1/TNFRSF1A/p55/CD120a), TNF-related apoptosis-inducing ligand receptor 1 (TRAIL-R1 /DR4), and receptor 2 (TRAIL-R2/DR5/APO-2/KILLER), as well as Death Receptor 3 (DR3/APO-3/TRAMP/WSL-1/LARD). They are involved in apoptosis signaling pathways. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=39.14 E-value=25 Score=26.39 Aligned_cols=45 Identities=20% Similarity=0.309 Sum_probs=33.7
Q ss_pred HHHhhhccCcchHHhhhhhhccchhHhhhhhhh-------hHHHhhhccchh
Q 024148 213 LRKLLDEVSPKNFERINKLLVVKDEEIHKLKDE-------IKIMSAHWKLKT 257 (272)
Q Consensus 213 l~kil~evspkn~e~inkll~~kD~eIakLrde-------irimSaHW~~KT 257 (272)
+-.+.++||++....+-+.|.++|.+|...+.+ +.=|=--|+.|.
T Consensus 2 ~~~v~~~v~~~~Wk~laR~LGls~~~I~~ie~~~~~~~eq~~~mL~~W~~k~ 53 (79)
T cd08784 2 FFDVFEEVPFDQHKRFFRKLGLSDNEIKVAELDNPQHRDRVYELLRIWRNKE 53 (79)
T ss_pred HHHHHHHCCHHHHHHHHHHcCCCHHHHHHHHHcCCchHHHHHHHHHHHHhcc
Confidence 346889999999999999999999999876543 223334566654
No 121
>PHA02562 46 endonuclease subunit; Provisional
Probab=38.81 E-value=3.5e+02 Score=25.71 Aligned_cols=18 Identities=33% Similarity=0.427 Sum_probs=8.2
Q ss_pred HhhchHHHHHHHHHHHhh
Q 024148 78 KAKNMEDEICKLQKTLEE 95 (272)
Q Consensus 78 kak~ME~Ei~kLqK~Lee 95 (272)
++..++.++..|+..+.+
T Consensus 228 ~~~~l~~~l~~l~~~i~~ 245 (562)
T PHA02562 228 EAKTIKAEIEELTDELLN 245 (562)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 122
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=37.76 E-value=1.4e+02 Score=27.19 Aligned_cols=34 Identities=24% Similarity=0.482 Sum_probs=27.3
Q ss_pred hhhhhhhHhhhhHHHHHhHHHHHhhhhhhHHHHH
Q 024148 155 SLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLK 188 (272)
Q Consensus 155 sLkEhE~rV~~lgeQLd~LqK~LqaRE~SQkQLK 188 (272)
.|+.=.+-+..+++|.+-|+.+|..|+--..||+
T Consensus 161 ~l~~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 161 NLKSVREDLDTIEEQVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555667889999999999999998877666664
No 123
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=37.71 E-value=4.9e+02 Score=27.08 Aligned_cols=20 Identities=30% Similarity=0.649 Sum_probs=12.6
Q ss_pred chhHhhhhhhhhHHHhhhcc
Q 024148 235 KDEEIHKLKDEIKIMSAHWK 254 (272)
Q Consensus 235 kD~eIakLrdeirimSaHW~ 254 (272)
.-++|.+|..|+.-+--|.+
T Consensus 369 ~k~~ie~L~~el~~~e~~lq 388 (546)
T PF07888_consen 369 DKDEIEKLSRELQMLEEHLQ 388 (546)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 33677777777766655543
No 124
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=37.31 E-value=2.7e+02 Score=23.91 Aligned_cols=127 Identities=20% Similarity=0.267 Sum_probs=79.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHhhhhhhhhhhhhhHHH
Q 024148 30 LKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEK 109 (272)
Q Consensus 30 LkDL~EKK~sfRrnvvsLaaELK~~R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Leek~eQL~as~~stEk 109 (272)
||----++-+|...|-+|=+||..+..-+.. ...+.+| +..-+-+|+.+|+.+-..|.+-...|.+..+--+.
T Consensus 12 LK~~~~e~dsle~~v~~LEreLe~~q~~~e~----~~~daEn---~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~ 84 (140)
T PF10473_consen 12 LKESESEKDSLEDHVESLERELEMSQENKEC----LILDAEN---SKAEIETLEEELEELTSELNQLELELDTLRSEKEN 84 (140)
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHhHHH----HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555567788888899998888876654322 2333333 22223458888888888888777777766655555
Q ss_pred HHHHhhhHhhhHHHHHHhhHhhHHhHHHHHHHHHHHHhhhhh-hhchhhhhhhHhhhhHHHHHhHH
Q 024148 110 YLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDE-KNSSLKEHEDRVTRLGQQLDNLQ 174 (272)
Q Consensus 110 yl~eLD~lRSQLs~TqATAeaSAaSAqsaqlqCl~L~keL~e-K~~sLkEhE~rV~~lgeQLd~Lq 174 (272)
.-++|.....+++-- .+.+..|..+++.+-. |.--..++...|..|..||..|+
T Consensus 85 L~k~lq~~q~kv~eL-----------E~~~~~~~~~l~~~E~ek~q~~e~~~~~ve~L~~ql~~L~ 139 (140)
T PF10473_consen 85 LDKELQKKQEKVSEL-----------ESLNSSLENLLQEKEQEKVQLKEESKSAVEMLQKQLKELN 139 (140)
T ss_pred HHHHHHHHHHHHHHH-----------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 667777766665433 3344456666665543 45555566667777776666553
No 125
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=37.31 E-value=3.9e+02 Score=25.83 Aligned_cols=130 Identities=19% Similarity=0.318 Sum_probs=78.4
Q ss_pred HHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHH-HHhhhHhhhHHHHHHhhHh
Q 024148 52 KEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYL-MQLDGLRSQLAATKATADA 130 (272)
Q Consensus 52 K~~R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Leek~eQL~as~~stEkyl-~eLD~lRSQLs~TqATAea 130 (272)
||=|.+|..-.+.-. .-++......-.+.+|+.-+..--+. +.+-|||+ ..|..+..++...+++=.
T Consensus 216 kDWR~hleqm~~~~~-------~I~~~~~~~~~~L~kl~~~i~~~lek----I~sREk~iN~qle~l~~eYr~~~~~ls- 283 (359)
T PF10498_consen 216 KDWRSHLEQMKQHKK-------SIESALPETKSQLDKLQQDISKTLEK----IESREKYINNQLEPLIQEYRSAQDELS- 283 (359)
T ss_pred chHHHHHHHHHHHHH-------HHHHhhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhHHHHHHHHHHHHHHH-
Confidence 588888865444322 12222223333444455444443333 34678888 677888877766665432
Q ss_pred hHHhHHHHHHHHHHHHhhhhhhhchhhhhhhHhhhhHHHHHhHHHHHhhhhhhH------HHHHHHHHHHHHHHHHHHHH
Q 024148 131 SAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQ------KQLKDEVFRIEQDIMQTIAK 204 (272)
Q Consensus 131 SAaSAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~lgeQLd~LqK~LqaRE~SQ------kQLKDeVlriE~dIm~Avak 204 (272)
.++-.+-.+.+...+++. ..+++.++|++++..++.|..|- -++|+-+-++..+|-+-=-+
T Consensus 284 ------~~~~~y~~~s~~V~~~t~-------~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI~qMdvr 350 (359)
T PF10498_consen 284 ------EVQEKYKQASEGVSERTR-------ELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEIKQMDVR 350 (359)
T ss_pred ------HHHHHHHHHhhHHHHHHH-------HHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhhhh
Confidence 223344444555444444 45679999999999999997653 37888888888888664334
Q ss_pred hc
Q 024148 205 AG 206 (272)
Q Consensus 205 ag 206 (272)
.|
T Consensus 351 IG 352 (359)
T PF10498_consen 351 IG 352 (359)
T ss_pred hh
Confidence 33
No 126
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=37.31 E-value=3.1e+02 Score=24.59 Aligned_cols=11 Identities=9% Similarity=0.157 Sum_probs=5.2
Q ss_pred ccchhHhhhhh
Q 024148 233 VVKDEEIHKLK 243 (272)
Q Consensus 233 ~~kD~eIakLr 243 (272)
.|....|.+++
T Consensus 315 ~v~~~~~~~i~ 325 (423)
T TIGR01843 315 KLSPKDIGFVH 325 (423)
T ss_pred EEChhhhhhhC
Confidence 34444555444
No 127
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.66 E-value=1.5e+02 Score=31.34 Aligned_cols=77 Identities=21% Similarity=0.245 Sum_probs=56.3
Q ss_pred hHHHHHHHhhhHhhhHHHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhchhhhhhhHhhhhHHHHHhHHHHHhhhhhhHH
Q 024148 106 TAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQK 185 (272)
Q Consensus 106 stEkyl~eLD~lRSQLs~TqATAeaSAaSAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~lgeQLd~LqK~LqaRE~SQk 185 (272)
-.|+|-+|+.+|.-.+++-|+ +. .||-+||..--...+.|.--.-++|+.|..++.-..
T Consensus 332 eIe~~~ke~kdLkEkv~~lq~-~l--------------------~eke~sl~dlkehassLas~glk~ds~Lk~leIalE 390 (654)
T KOG4809|consen 332 EIESFRKENKDLKEKVNALQA-EL--------------------TEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALE 390 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HH--------------------HHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Confidence 356699999999988887776 32 333444433333455555556678899999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 024148 186 QLKDEVFRIEQDIMQTIA 203 (272)
Q Consensus 186 QLKDeVlriE~dIm~Ava 203 (272)
|=|+|....|.|.-.|--
T Consensus 391 qkkEec~kme~qLkkAh~ 408 (654)
T KOG4809|consen 391 QKKEECSKMEAQLKKAHN 408 (654)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999888763
No 128
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=36.60 E-value=12 Score=37.88 Aligned_cols=45 Identities=33% Similarity=0.455 Sum_probs=0.0
Q ss_pred hHHHHHHHhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhhHhh
Q 024148 71 TRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRS 119 (272)
Q Consensus 71 tRk~aE~kak~ME~Ei~kLqK~Leek~eQL~as~~stEkyl~eLD~lRS 119 (272)
.+...+.++..+|.||.+|+. ++..|.+-+-.+..|-.|||.||.
T Consensus 261 ~~~d~~~~~e~le~ei~~L~q----~~~eL~~~A~~a~~LrDElD~lR~ 305 (713)
T PF05622_consen 261 QRDDLKIELEELEKEIDELRQ----ENEELQAEAREARALRDELDELRE 305 (713)
T ss_dssp -------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhHHHHHH
Confidence 344445555667777766654 455677777777777777777765
No 129
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=36.38 E-value=7.3e+02 Score=28.68 Aligned_cols=27 Identities=26% Similarity=0.276 Sum_probs=16.8
Q ss_pred HHhhhccCcchHHhhhhhhccchhHhh
Q 024148 214 RKLLDEVSPKNFERINKLLVVKDEEIH 240 (272)
Q Consensus 214 ~kil~evspkn~e~inkll~~kD~eIa 240 (272)
..+|+-+++-+-++.|++-..+|..+.
T Consensus 730 ~e~L~~d~~~~~~~~~~l~r~~~~~~~ 756 (1317)
T KOG0612|consen 730 LEYLSNDYKQSQEKLNELRRSKDQLIT 756 (1317)
T ss_pred HHHHhhhhhhhccchhhhhhhHHHHHH
Confidence 345566666666777777666665554
No 130
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=36.23 E-value=12 Score=37.80 Aligned_cols=36 Identities=25% Similarity=0.446 Sum_probs=0.0
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024148 25 EIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLAS 60 (272)
Q Consensus 25 elDPLLkDL~EKK~sfRrnvvsLaaELK~~R~rLas 60 (272)
.|.-|=..+.--+..+++-.+.+-.++.+...++..
T Consensus 69 ~l~~Le~e~~~~~~e~~~~~~~le~~~~~l~~~~~~ 104 (722)
T PF05557_consen 69 QLNQLEYELEQLKQEHERAQLELEKELRELQRQLER 104 (722)
T ss_dssp ------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566667777777777666666665555554443
No 131
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=36.12 E-value=3.9e+02 Score=25.44 Aligned_cols=71 Identities=13% Similarity=0.146 Sum_probs=40.1
Q ss_pred hchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhhHhhhHHHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhchhhhh
Q 024148 80 KNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEH 159 (272)
Q Consensus 80 k~ME~Ei~kLqK~Leek~eQL~as~~stEkyl~eLD~lRSQLs~TqATAeaSAaSAqsaqlqCl~L~keL~eK~~sLkEh 159 (272)
-+|=-+|.-|...|+|..+++--.--..+.=..++.-++-..... +.++-.|-.+|.+++..+.+|
T Consensus 108 ~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L--------------~~e~~~Lre~L~~rdeli~kh 173 (302)
T PF09738_consen 108 SALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSL--------------REELDELREQLKQRDELIEKH 173 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHC
Confidence 456677888888888877766444333333334444444333322 334445555666677777777
Q ss_pred hhHhh
Q 024148 160 EDRVT 164 (272)
Q Consensus 160 E~rV~ 164 (272)
++=++
T Consensus 174 GlVlv 178 (302)
T PF09738_consen 174 GLVLV 178 (302)
T ss_pred CeeeC
Confidence 66544
No 132
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=36.07 E-value=4e+02 Score=27.98 Aligned_cols=129 Identities=19% Similarity=0.268 Sum_probs=0.0
Q ss_pred HHHHHHhhhHhhhHHHHHHhhHhhHHhHHHHHHHHHHHHhhhh---hhhchhhhhhhHhhhhHHHHHhHHHHHhhhhhhH
Q 024148 108 EKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELD---EKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQ 184 (272)
Q Consensus 108 Ekyl~eLD~lRSQLs~TqATAeaSAaSAqsaqlqCl~L~keL~---eK~~sLkEhE~rV~~lgeQLd~LqK~LqaRE~SQ 184 (272)
.+|..++-.+..+|.-.+++-+.--....++|..=..|...+. +-..-.+.-+.-....-+.++.||..++.-+-..
T Consensus 178 ~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~l~~l~~~~ 257 (670)
T KOG0239|consen 178 LKLESDLGDLVTELEHVTNSISELESVLKSAQEERRVLADSLGNYADLRRNIKPLEGLESTIKKKIQALQQELEELKAEL 257 (670)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchhHHHHhhhccCcchHHhhhhhhccchhHhhhhhhhh
Q 024148 185 KQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEI 246 (272)
Q Consensus 185 kQLKDeVlriE~dIm~Avakag~~~d~El~kil~evspkn~e~inkll~~kD~eIakLrdei 246 (272)
+++++.+..+-..+-+++...+.- ..++.-.|-.-..+. ...++..+|..+|
T Consensus 258 ~~l~~~~~~~~~~~~~~~~~~~~~--------~~~L~~~~~~l~~~~--~e~~~r~kL~N~i 309 (670)
T KOG0239|consen 258 KELNDQVSLLTREVQEALKESNTL--------QSDLESLEENLVEKK--KEKEERRKLHNEI 309 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH--HHHHHHHHHHHHH
No 133
>PF12522 UL73_N: Cytomegalovirus glycoprotein N terminal; InterPro: IPR021003 This domain family is found in viruses, and is approximately 30 amino acids in length. The signature is found in association with PF03554 from PFAM. This family is an envelope glycoprotein of (Human herpesvirus 5) [].
Probab=35.28 E-value=25 Score=23.46 Aligned_cols=14 Identities=50% Similarity=0.608 Sum_probs=6.5
Q ss_pred CCCCCccccCCCCC
Q 024148 4 SGHRSSMSTSSSSS 17 (272)
Q Consensus 4 ~~~~~~~~~~~~~~ 17 (272)
+|..||.|||+++|
T Consensus 13 s~n~sSTsts~tt~ 26 (27)
T PF12522_consen 13 SGNNSSTSTSATTP 26 (27)
T ss_pred ccCCccccccccCC
Confidence 44444544444443
No 134
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=35.19 E-value=1.8e+02 Score=24.25 Aligned_cols=86 Identities=23% Similarity=0.434 Sum_probs=58.3
Q ss_pred HhhhhHHHHHhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHhhhccCcchHHhhhhhhccchhHhhh
Q 024148 162 RVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHK 241 (272)
Q Consensus 162 rV~~lgeQLd~LqK~LqaRE~SQkQLKDeVlriE~dIm~Avakag~~~d~El~kil~evspkn~e~inkll~~kD~eIak 241 (272)
.+.++..++..++..+..-+-...++.+|+.++-...=+. ++......+|+.=+.++.-+ .+.+=.+|.=|.+++..
T Consensus 24 ~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~--~~~~~~~~~L~~el~~l~~r-y~t~LellGEK~E~veE 100 (120)
T PF12325_consen 24 QLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL--RALKKEVEELEQELEELQQR-YQTLLELLGEKSEEVEE 100 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH-HHHHHHHhcchHHHHHH
Confidence 4556667777888888888888889999988865443222 23334455666666665542 34455677789999999
Q ss_pred hhhhhHHHh
Q 024148 242 LKDEIKIMS 250 (272)
Q Consensus 242 LrdeirimS 250 (272)
|+.+|.=|-
T Consensus 101 L~~Dv~DlK 109 (120)
T PF12325_consen 101 LRADVQDLK 109 (120)
T ss_pred HHHHHHHHH
Confidence 999886543
No 135
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=34.84 E-value=6.7e+02 Score=27.77 Aligned_cols=55 Identities=24% Similarity=0.355 Sum_probs=35.1
Q ss_pred HHHHHHHHhhhhhhhc----hhhhhhhHhhhhHHHHHhHHHHHhhhhhhHHHHHHHHHH
Q 024148 139 QLQCLALVKELDEKNS----SLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFR 193 (272)
Q Consensus 139 qlqCl~L~keL~eK~~----sLkEhE~rV~~lgeQLd~LqK~LqaRE~SQkQLKDeVlr 193 (272)
|||-+..+|.|..|.. .+.-....|+.|.+.++-|..-|.+++-..|++..-|-+
T Consensus 469 ql~qs~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k 527 (961)
T KOG4673|consen 469 QLAQSAIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEK 527 (961)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 6677788888887642 133344455666666666666677777777777665444
No 136
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=34.68 E-value=3.5e+02 Score=24.46 Aligned_cols=53 Identities=42% Similarity=0.589 Sum_probs=34.2
Q ss_pred hhhHhh------hhHHHHHhHHHHHhhhhhhHHHHHHHHHHHHHHHHH-HHHHhcCCchhHHHHhhh
Q 024148 159 HEDRVT------RLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQ-TIAKAGVNKDCELRKLLD 218 (272)
Q Consensus 159 hE~rV~------~lgeQLd~LqK~LqaRE~SQkQLKDeVlriE~dIm~-Avakag~~~d~El~kil~ 218 (272)
-++||+ +|-.||..|..+|. ++||+=.....||+- ...++|.+|-.-|++|=.
T Consensus 174 EeeR~t~~EKnk~lq~QL~~L~~EL~-------~~kde~k~T~~D~~h~en~~~g~~ky~tl~~i~~ 233 (246)
T PF00769_consen 174 EEERVTYAEKNKRLQEQLKELKSELE-------QLKDEEKQTQLDIIHAENVRAGRDKYKTLRQIRQ 233 (246)
T ss_dssp GGC---HHHH-HHHHHHHHHHHHHHH-------TTB-CCG--HHHHHHHHHHHTT--HHHHHHHHT-
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHH-------HHhhhhccchhHHHHHHHHHhchhHHHHHHHHhc
Confidence 356665 58889999988885 577776678888876 456899999999988743
No 137
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=34.49 E-value=2.7e+02 Score=25.20 Aligned_cols=62 Identities=23% Similarity=0.415 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHH------HHHHhhchHHHHHHHH
Q 024148 29 LLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQE------AEMKAKNMEDEICKLQ 90 (272)
Q Consensus 29 LLkDL~EKK~sfRrnvvsLaaELK~~R~rLasQEq~~akEt~tRk~------aE~kak~ME~Ei~kLq 90 (272)
....+..++.++..++..|-..+...|..+..+.....+.-...+. ...++..|+.||..|+
T Consensus 230 ~~~~le~~~~~~ee~~~~L~ekme~e~~~~~~e~e~~l~~k~~eq~~~l~e~~~~~~~~l~~ei~~L~ 297 (297)
T PF02841_consen 230 QEQMLEQQERSYEEHIKQLKEKMEEEREQLLQEQERLLEQKLQEQEELLKEGFQEEAEKLQKEIQDLQ 297 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
No 138
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=34.20 E-value=3.2e+02 Score=23.86 Aligned_cols=107 Identities=21% Similarity=0.259 Sum_probs=57.9
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH-------------HHHhhHHHHHHHhhchHHHHHHHHH
Q 024148 25 EIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFV-------------KETLTRQEAEMKAKNMEDEICKLQK 91 (272)
Q Consensus 25 elDPLLkDL~EKK~sfRrnvvsLaaELK~~R~rLasQEq~~a-------------kEt~tRk~aE~kak~ME~Ei~kLqK 91 (272)
-||-++.|+.+-=...|+.|+..-+.-|....++...+.... .|...|..++ +...-+..+..|+
T Consensus 28 ~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~-~k~~~~~~~~~l~- 105 (219)
T TIGR02977 28 MIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALI-EKQKAQELAEALE- 105 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH-HHHHHHHHHHHHH-
Confidence 455567888877777888888887776666655554433221 2333332222 1122222333333
Q ss_pred HHhhhhhhhhhhhhhHHHHHHHhhhHhhhHHHHHHhhHhhHHhHHHHH
Q 024148 92 TLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQ 139 (272)
Q Consensus 92 ~Leek~eQL~as~~stEkyl~eLD~lRSQLs~TqATAeaSAaSAqsaq 139 (272)
.|+.......+++-..|..|+.++...++.-..=.+=.+.|+
T Consensus 106 ------~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~ 147 (219)
T TIGR02977 106 ------RELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAAS 147 (219)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334445566667777777887777777664333333333
No 139
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=34.10 E-value=1.8e+02 Score=24.56 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=13.4
Q ss_pred HHHHHhhhHhhhHHHHHHhhHhh
Q 024148 109 KYLMQLDGLRSQLAATKATADAS 131 (272)
Q Consensus 109 kyl~eLD~lRSQLs~TqATAeaS 131 (272)
.++.++..++..+.+.+..++..
T Consensus 122 ~li~~l~~~~~~~~~~~kq~~~~ 144 (192)
T PF05529_consen 122 SLIKELIKLEEKLEALKKQAESA 144 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 35566666666666555544433
No 140
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=33.67 E-value=3.2e+02 Score=23.80 Aligned_cols=103 Identities=18% Similarity=0.258 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHhhhhhhhhhh-hhhHHHHHHHhh
Q 024148 37 KQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQAS-ACTAEKYLMQLD 115 (272)
Q Consensus 37 K~sfRrnvvsLaaELK~~R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Leek~eQL~as-~~stEkyl~eLD 115 (272)
....++.+..|-+++.+.+.+++.-+..+..+-..|...+.|...| .++..|++.+..-..+|... .+.. ..++
T Consensus 64 ~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l-~~l~~l~~~~~~l~~el~~~~~~Dp----~~i~ 138 (188)
T PF03962_consen 64 KQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELL-EELEELKKELKELKKELEKYSENDP----EKIE 138 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCH----HHHH
Confidence 3445555666666777777776666666665555554444444422 23444444333333333311 1122 3455
Q ss_pred hHhhhHHHHHHhhHhhHHhHHHHHHHHHH
Q 024148 116 GLRSQLAATKATADASAASAQSAQLQCLA 144 (272)
Q Consensus 116 ~lRSQLs~TqATAeaSAaSAqsaqlqCl~ 144 (272)
.++..+...+..|.-=+..--+.+..|..
T Consensus 139 ~~~~~~~~~~~~anrwTDNI~~l~~~~~~ 167 (188)
T PF03962_consen 139 KLKEEIKIAKEAANRWTDNIFSLKSYLKK 167 (188)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 56666666665555544444444555544
No 141
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=33.57 E-value=6e+02 Score=26.83 Aligned_cols=209 Identities=26% Similarity=0.367 Sum_probs=130.8
Q ss_pred ccchhhhhhHHHHHHHHHHHHHH-----HHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHhhhhhh
Q 024148 25 EIDPLLKDLNEKKQSFRKNVVSL-----AAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGR 99 (272)
Q Consensus 25 elDPLLkDL~EKK~sfRrnvvsL-----aaELK~~R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Leek~eQ 99 (272)
.+|.=+.+|.++---.--|++-| -+||-..-.++-+-=..|.+|-..+++++.+-..+=+=+.+ ..+.|++
T Consensus 252 ~id~~~~~L~~~l~~~~~~l~~Leld~aeeel~~I~e~ie~lYd~lE~EveA~~~V~~~~~~l~~~l~k----~ke~n~~ 327 (570)
T COG4477 252 NIDSRLERLKEQLVENSELLTQLELDEAEEELGLIQEKIESLYDLLEREVEAKNVVEENLPILPDYLEK----AKENNEH 327 (570)
T ss_pred cHHHHHHHHHHHHHHHHhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHH----HHHHHHH
Confidence 34555566655444333444444 23444455555566678999999999999877665444333 3344444
Q ss_pred hhhh--------------hhhHHHHHHHhhhHhhhHHHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhchhhhhhhHhhh
Q 024148 100 LQAS--------------ACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTR 165 (272)
Q Consensus 100 L~as--------------~~stEkyl~eLD~lRSQLs~TqATAeaSAaSAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~ 165 (272)
|..- +++--+|-++|+.|++++...-.--++++.. -+.|...|.+=...|+..++--.+
T Consensus 328 L~~Eie~V~~sY~l~e~e~~~vr~~e~eL~el~~~~~~i~~~~~~~~~~-------yS~lq~~l~~~~~~l~~i~~~q~~ 400 (570)
T COG4477 328 LKEEIERVKESYRLAETELGSVRKFEKELKELESVLDEILENIEAQEVA-------YSELQDNLEEIEKALTDIEDEQEK 400 (570)
T ss_pred HHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc-------HHHHHHHHHHHHHHHHHHhhhHHH
Confidence 4332 2334458899999999998776655554432 334445555556667788888888
Q ss_pred hHHHHHhHHHH-HhhhhhhHHHHHHHHHHH------------HHHHHHHHHHhcCCchhHHHHhhhccCcchHHhhhhhh
Q 024148 166 LGQQLDNLQKD-LQARESSQKQLKDEVFRI------------EQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLL 232 (272)
Q Consensus 166 lgeQLd~LqK~-LqaRE~SQkQLKDeVlri------------E~dIm~Avakag~~~d~El~kil~evspkn~e~inkll 232 (272)
+.+-|..|.|| ++||+- ..+++..+.-| =.++...+.-+| +.--.+.+=|+++ |=|++.++.++
T Consensus 401 ~~e~L~~LrkdEl~Are~-l~~~~~~l~eikR~mek~nLPGlPe~~l~l~~~~~-~~i~~l~~eLse~-pinm~~v~~~v 477 (570)
T COG4477 401 VQEHLTSLRKDELEAREN-LERLKSKLHEIKRYMEKSNLPGLPETFLSLFFTAG-HEIQDLMKELSEV-PINMEAVSALV 477 (570)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHhhh-hHHHHHHHHHhhc-CCcHHHHHHHH
Confidence 88888888885 677763 23444443322 235555554333 3334455555555 78999999999
Q ss_pred ccchhHhhhhhhhhH
Q 024148 233 VVKDEEIHKLKDEIK 247 (272)
Q Consensus 233 ~~kD~eIakLrdeir 247 (272)
.+--+.|+.|.++-.
T Consensus 478 ~~a~~~m~~l~~~t~ 492 (570)
T COG4477 478 DIATEDMNTLEDETE 492 (570)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999888998888753
No 142
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=33.54 E-value=3.1e+02 Score=23.49 Aligned_cols=19 Identities=21% Similarity=0.331 Sum_probs=9.8
Q ss_pred HHHhhhHhhhHHHHHHhhH
Q 024148 111 LMQLDGLRSQLAATKATAD 129 (272)
Q Consensus 111 l~eLD~lRSQLs~TqATAe 129 (272)
...++.+|.+|..-+.+..
T Consensus 90 r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 90 RERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455555555555544443
No 143
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=33.22 E-value=4.4e+02 Score=25.23 Aligned_cols=51 Identities=18% Similarity=0.184 Sum_probs=22.8
Q ss_pred HHHHhhchHHHHHHHHHHHhhhhhhh----hhhhhhHHHHHHHhhhHhhhHHHHH
Q 024148 75 AEMKAKNMEDEICKLQKTLEERNGRL----QASACTAEKYLMQLDGLRSQLAATK 125 (272)
Q Consensus 75 aE~kak~ME~Ei~kLqK~Leek~eQL----~as~~stEkyl~eLD~lRSQLs~Tq 125 (272)
.+.+.++++.+|..++..+.+...-. --...+..++...+..+..+|.+++
T Consensus 93 l~~~i~~l~~~i~~y~~~~~~~~~~~~~~~~n~~~~~~~~t~~la~~t~~L~~~~ 147 (301)
T PF06120_consen 93 LQKKIDSLKDQIKNYQQQLAEKGITENGYIINHLMSQADATRKLAEATRELAVAQ 147 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555554444432211 1111223345555555555555444
No 144
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=33.02 E-value=4.9e+02 Score=27.42 Aligned_cols=17 Identities=18% Similarity=0.477 Sum_probs=9.1
Q ss_pred ccchhhhhhHHHHHHHH
Q 024148 25 EIDPLLKDLNEKKQSFR 41 (272)
Q Consensus 25 elDPLLkDL~EKK~sfR 41 (272)
+++-|+.+|.+.+..+.
T Consensus 517 ~~~~li~~l~~~~~~~e 533 (782)
T PRK00409 517 KLNELIASLEELERELE 533 (782)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45556666665554433
No 145
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=32.31 E-value=4.5e+02 Score=25.03 Aligned_cols=29 Identities=34% Similarity=0.548 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 024148 34 NEKKQSFRKNVVSLAAELKEVRTRLASQE 62 (272)
Q Consensus 34 ~EKK~sfRrnvvsLaaELK~~R~rLasQE 62 (272)
..+...|+|...|+..++-+.|.++..=|
T Consensus 187 ~~~~~~~~~~~~~l~~~l~~lr~~~~~ae 215 (458)
T COG3206 187 EAQLEAFRRASDSLDERLEELRARLQEAE 215 (458)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667899999999999999888875443
No 146
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=32.29 E-value=2.2e+02 Score=21.54 Aligned_cols=50 Identities=18% Similarity=0.135 Sum_probs=22.5
Q ss_pred HHHHhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhhHhhhHHHH
Q 024148 75 AEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAAT 124 (272)
Q Consensus 75 aE~kak~ME~Ei~kLqK~Leek~eQL~as~~stEkyl~eLD~lRSQLs~T 124 (272)
+..+....+.+...|...=..---||.--.....++..|++.|+-+|.-+
T Consensus 17 ~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 17 LTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444455555555554211112233333333444556666666655443
No 147
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=32.15 E-value=4.2e+02 Score=24.59 Aligned_cols=110 Identities=20% Similarity=0.219 Sum_probs=0.0
Q ss_pred hhHHHHHHHhhchHHHHHHHHHHHhhhhhhhhhhhh---------hHHHHHHHhhhHhhhHHHHHH--------------
Q 024148 70 LTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASAC---------TAEKYLMQLDGLRSQLAATKA-------------- 126 (272)
Q Consensus 70 ~tRk~aE~kak~ME~Ei~kLqK~Leek~eQL~as~~---------stEkyl~eLD~lRSQLs~TqA-------------- 126 (272)
.....+..-..-+++++..+++.|.+-..+|.++-. .++--...|.++.+|+..+++
T Consensus 164 ~~~~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~ 243 (444)
T TIGR03017 164 LKVEPAQKAALWFVQQIAALREDLARAQSKLSAYQQEKGIVSSDERLDVERARLNELSAQLVAAQAQVMDASSKEGGSSG 243 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q ss_pred ----hhHhhHHhHHHHHHHHHHHHhhhhhhhchhhhhhhHhhhhHHHHHhHHHHHhh
Q 024148 127 ----TADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQA 179 (272)
Q Consensus 127 ----TAeaSAaSAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~lgeQLd~LqK~Lqa 179 (272)
+.-.....-+...-+=..+-.+|.+-...+++.--.|..+-.|++.+++.+..
T Consensus 244 ~~~~~~~~~~~~i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~ 300 (444)
T TIGR03017 244 KDALPEVIANPIIQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNA 300 (444)
T ss_pred cccchhhhcChHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
No 148
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=31.89 E-value=6.3e+02 Score=26.62 Aligned_cols=89 Identities=26% Similarity=0.428 Sum_probs=50.8
Q ss_pred hhHhhhhHHHHHhHHHHHhhhhhhHHHHHHHH--HHH-----HHHH---HHHHHHh-------------cCCchhHHHHh
Q 024148 160 EDRVTRLGQQLDNLQKDLQARESSQKQLKDEV--FRI-----EQDI---MQTIAKA-------------GVNKDCELRKL 216 (272)
Q Consensus 160 E~rV~~lgeQLd~LqK~LqaRE~SQkQLKDeV--lri-----E~dI---m~Avaka-------------g~~~d~El~ki 216 (272)
..|...|...++.|+.+|..+|=-..+|..|+ +|- +.|+ |-|++-. .+-.--+|..-
T Consensus 544 r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsa 623 (697)
T PF09726_consen 544 RQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSA 623 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34667788888888888888887777777665 221 1222 2233211 11112233333
Q ss_pred hhccCcchHHhhhhhhccchhHhhhhhhhhHHH
Q 024148 217 LDEVSPKNFERINKLLVVKDEEIHKLKDEIKIM 249 (272)
Q Consensus 217 l~evspkn~e~inkll~~kD~eIakLrdeirim 249 (272)
|.|. -+-.|-....+.-||.||..||..|-=+
T Consensus 624 Lg~a-krq~ei~~~~~~~~d~ei~~lk~ki~~~ 655 (697)
T PF09726_consen 624 LGDA-KRQLEIAQGQLRKKDKEIEELKAKIAQL 655 (697)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3332 2445666677777888888888876533
No 149
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=31.81 E-value=15 Score=37.00 Aligned_cols=32 Identities=31% Similarity=0.514 Sum_probs=0.0
Q ss_pred hhhhhhHhhhhHHHHHhHHHHHhhhhhhHHHH
Q 024148 156 LKEHEDRVTRLGQQLDNLQKDLQARESSQKQL 187 (272)
Q Consensus 156 LkEhE~rV~~lgeQLd~LqK~LqaRE~SQkQL 187 (272)
+..++..+..+-++|+.+++.++.++--..+|
T Consensus 187 ~~~l~~e~~~l~~~le~~~~~~~e~e~~~~~L 218 (722)
T PF05557_consen 187 IQSLESELEELKEQLEELQSELQEAEQQLQEL 218 (722)
T ss_dssp --------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555566666666666655554433344
No 150
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=31.78 E-value=4.5e+02 Score=24.81 Aligned_cols=93 Identities=22% Similarity=0.213 Sum_probs=42.8
Q ss_pred chHHHHHHHHHHHhhhhhhhhhhhhhHHH-HHHHhhhHhhhHHHHHHhhHhhHHhHHHHHHHHHHHHhhh---hhh---h
Q 024148 81 NMEDEICKLQKTLEERNGRLQASACTAEK-YLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKEL---DEK---N 153 (272)
Q Consensus 81 ~ME~Ei~kLqK~Leek~eQL~as~~stEk-yl~eLD~lRSQLs~TqATAeaSAaSAqsaqlqCl~L~keL---~eK---~ 153 (272)
.||+=...=-..|-.+-+.+...+++.+. |...|.++++-|-......+.-... - |-|--.|-..+ ++- -
T Consensus 31 dtE~st~~~Vr~lLqqy~~~~~~i~~le~~~~~~l~~ak~eLqe~eek~e~~l~~-L--q~ql~~l~akI~k~~~el~~L 107 (258)
T PF15397_consen 31 DTEDSTALKVRKLLQQYDIYRTAIDILEYSNHKQLQQAKAELQEWEEKEESKLSK-L--QQQLEQLDAKIQKTQEELNFL 107 (258)
T ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHhHHHH-H--HHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444444444444443 3455777777776655444332221 1 11111111111 111 1
Q ss_pred chhhhhhhHhhh-----hHHHHHhHHHH
Q 024148 154 SSLKEHEDRVTR-----LGQQLDNLQKD 176 (272)
Q Consensus 154 ~sLkEhE~rV~~-----lgeQLd~LqK~ 176 (272)
+..++||.+|.. |..||++|...
T Consensus 108 ~TYkD~EYPvK~vqIa~L~rqlq~lk~~ 135 (258)
T PF15397_consen 108 STYKDHEYPVKAVQIANLVRQLQQLKDS 135 (258)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 345789998876 55666666443
No 151
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=31.66 E-value=2.8e+02 Score=22.45 Aligned_cols=23 Identities=35% Similarity=0.484 Sum_probs=13.9
Q ss_pred hhhhhhHhhhhHHHHHhHHHHHh
Q 024148 156 LKEHEDRVTRLGQQLDNLQKDLQ 178 (272)
Q Consensus 156 LkEhE~rV~~lgeQLd~LqK~Lq 178 (272)
+.+-+.|+.-|.+|=..|..-|+
T Consensus 107 ~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 107 LSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445666777777666665554
No 152
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=31.60 E-value=75 Score=29.02 Aligned_cols=43 Identities=26% Similarity=0.442 Sum_probs=30.0
Q ss_pred hhhhHhhhhHHHHHhHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 024148 158 EHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQ 200 (272)
Q Consensus 158 EhE~rV~~lgeQLd~LqK~LqaRE~SQkQLKDeVlriE~dIm~ 200 (272)
--|.+|.++.+|+|.+=-.+.+.--.-.+++.+|-.+|.||-.
T Consensus 83 nlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~ 125 (189)
T TIGR02132 83 NLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKS 125 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHH
Confidence 3466666777777766556654444456899999999999843
No 153
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=31.37 E-value=4.8e+02 Score=25.84 Aligned_cols=112 Identities=20% Similarity=0.238 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHhhhhhhhhhhhhhHHH
Q 024148 30 LKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEK 109 (272)
Q Consensus 30 LkDL~EKK~sfRrnvvsLaaELK~~R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Leek~eQL~as~~stEk 109 (272)
|.|+..--..+.-++-.=..+|-++..||..-.++.-|=..+....-.....++.|+.. ++.-...+..-....++
T Consensus 282 l~d~~~~l~~~~~~l~~dp~~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~----l~~~~~~le~L~~el~~ 357 (563)
T TIGR00634 282 VEEATRELQNYLDELEFDPERLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQ----LDDSDESLEALEEEVDK 357 (563)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH----HhCCHHHHHHHHHHHHH
Q ss_pred HHHHhhhHhhhHHHHHHhhHhhHHhHHHHHHHHHHH
Q 024148 110 YLMQLDGLRSQLAATKATADASAASAQSAQLQCLAL 145 (272)
Q Consensus 110 yl~eLD~lRSQLs~TqATAeaSAaSAqsaqlqCl~L 145 (272)
+..++..+-.+|+..+..+-..-+.+-...|+.+.+
T Consensus 358 l~~~l~~~a~~Ls~~R~~~a~~l~~~v~~~l~~L~m 393 (563)
T TIGR00634 358 LEEELDKAAVALSLIRRKAAERLAKRVEQELKALAM 393 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
No 154
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=31.33 E-value=6.1e+02 Score=26.26 Aligned_cols=149 Identities=26% Similarity=0.333 Sum_probs=69.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH--HHhhHHHHHHHhh--ch------HHHHHHHHHHHhhhhhh
Q 024148 30 LKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVK--ETLTRQEAEMKAK--NM------EDEICKLQKTLEERNGR 99 (272)
Q Consensus 30 LkDL~EKK~sfRrnvvsLaaELK~~R~rLasQEq~~ak--Et~tRk~aE~kak--~M------E~Ei~kLqK~Leek~eQ 99 (272)
|..|.+.-+.++.++..+.+|++...+.+.-.+.-... ...++.+.+.+.+ .+ |.=|.+|+.-++..-+.
T Consensus 330 l~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~s~~r 409 (594)
T PF05667_consen 330 LEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVEASEQR 409 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 44556666677777777777777777665543332221 1111222222211 11 34455566555555555
Q ss_pred hhhhhhhHHHHHHHhhhHhhhHHHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhh----chhhhhhhHhhhhHHHHHhHHH
Q 024148 100 LQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKN----SSLKEHEDRVTRLGQQLDNLQK 175 (272)
Q Consensus 100 L~as~~stEkyl~eLD~lRSQLs~TqATAeaSAaSAqsaqlqCl~L~keL~eK~----~sLkEhE~rV~~lgeQLd~LqK 175 (272)
+..-+.--|+|...|.+--..|......- .+--.+++.=++.+.++. .-++.-+...++|..++..+-|
T Consensus 410 l~~L~~qWe~~R~pL~~e~r~lk~~~~~~-------~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k 482 (594)
T PF05667_consen 410 LVELAQQWEKHRAPLIEEYRRLKEKASNR-------ESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPK 482 (594)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhc-------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 55555555554433322222222111111 111112223333333332 3334445666677777777777
Q ss_pred HHhhhhhhHH
Q 024148 176 DLQARESSQK 185 (272)
Q Consensus 176 ~LqaRE~SQk 185 (272)
+..---++++
T Consensus 483 ~~~Rs~Yt~R 492 (594)
T PF05667_consen 483 DVNRSAYTRR 492 (594)
T ss_pred CCCHHHHHHH
Confidence 6555555544
No 155
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=31.24 E-value=6.4e+02 Score=26.46 Aligned_cols=24 Identities=33% Similarity=0.367 Sum_probs=10.2
Q ss_pred HhhchHHHHHHHHHHHhhhhhhhh
Q 024148 78 KAKNMEDEICKLQKTLEERNGRLQ 101 (272)
Q Consensus 78 kak~ME~Ei~kLqK~Leek~eQL~ 101 (272)
+++.+..++.+..+.++.+-.+++
T Consensus 590 ~~r~~~~~~~~~~~~l~~~~~~l~ 613 (908)
T COG0419 590 ELRERLKELKKKLKELEERLSQLE 613 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444433333
No 156
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=31.04 E-value=4.1e+02 Score=26.36 Aligned_cols=40 Identities=35% Similarity=0.414 Sum_probs=28.5
Q ss_pred hchhhhhhhHhhhhHHHHHhHHHHHhhhhhhHHHHHHHHHHHH
Q 024148 153 NSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIE 195 (272)
Q Consensus 153 ~~sLkEhE~rV~~lgeQLd~LqK~LqaRE~SQkQLKDeVlriE 195 (272)
..+|-|-..|..+|.|||+.+-.-++ .|.+ .||.++-.+|
T Consensus 250 ~~~LqEEr~R~erLEeqlNd~~elHq-~Ei~--~LKqeLa~~E 289 (395)
T PF10267_consen 250 LEALQEERYRYERLEEQLNDLTELHQ-NEIY--NLKQELASME 289 (395)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH-HHHH--HHHHHHHhHH
Confidence 45677778899999999998765444 4555 6777776666
No 157
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=30.96 E-value=38 Score=30.12 Aligned_cols=30 Identities=33% Similarity=0.426 Sum_probs=23.2
Q ss_pred hHhhhhhhhhHHH------hhhccchhhhhHHhhhh
Q 024148 237 EEIHKLKDEIKIM------SAHWKLKTKELESQRSN 266 (272)
Q Consensus 237 ~eIakLrdeirim------SaHW~~KTKELEsQlek 266 (272)
+||++|..+|..| +..|++|.-.|+++|+.
T Consensus 127 ~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~ 162 (171)
T PF04799_consen 127 DEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELER 162 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666554 67899999999999986
No 158
>PF09969 DUF2203: Uncharacterized conserved protein (DUF2203); InterPro: IPR018699 This family has no known function.
Probab=30.67 E-value=1.9e+02 Score=23.82 Aligned_cols=33 Identities=24% Similarity=0.460 Sum_probs=23.4
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024148 26 IDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRL 58 (272)
Q Consensus 26 lDPLLkDL~EKK~sfRrnvvsLaaELK~~R~rL 58 (272)
+=|+|+.+.+.-...++.+..+.++|.+.+...
T Consensus 11 lLP~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 43 (120)
T PF09969_consen 11 LLPLLRPILEEIRELKAELEELEERLQELEDSL 43 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 346777776666777778888888887766655
No 159
>PF08990 Docking: Erythronolide synthase docking; InterPro: IPR015083 The N-terminal docking domain found in modular polyketide synthase assumes an alpha-helical structure, wherein two alpha-helices are connected by a short loop. Two such N-terminal domains dimerise to form amphipathic parallel alpha-helical coiled coils: dimerisation is essential for protein function []. ; GO: 0016740 transferase activity, 0048037 cofactor binding; PDB: 2HG4_E.
Probab=30.30 E-value=78 Score=20.65 Aligned_cols=20 Identities=35% Similarity=0.566 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 024148 40 FRKNVVSLAAELKEVRTRLA 59 (272)
Q Consensus 40 fRrnvvsLaaELK~~R~rLa 59 (272)
+|.-+-+..+||.++|.||.
T Consensus 7 Lr~YLkr~t~eL~~~r~RLr 26 (27)
T PF08990_consen 7 LRDYLKRVTAELRRARRRLR 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 56777888999999999985
No 160
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=29.92 E-value=2.7e+02 Score=21.75 Aligned_cols=52 Identities=29% Similarity=0.541 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHhhhhhh
Q 024148 38 QSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGR 99 (272)
Q Consensus 38 ~sfRrnvvsLaaELK~~R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Leek~eQ 99 (272)
..|-..|.+=..|+-..|+.+-.-|+.+.+ .| ..-|+||.+|...|+.++.|
T Consensus 28 ~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~k---------mK-~~YEeEI~rLr~eLe~r~~~ 79 (79)
T PF08581_consen 28 DEYEHKINSQIQEMQQIRQKVYELEQAHRK---------MK-QQYEEEIARLRRELEQRGRQ 79 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HH-HHHHHHHHHHHHHHCHHTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HH-HHHHHHHHHHHHHHHhhCCC
Confidence 344455666666676666666665554431 11 13599999999999988876
No 161
>COG0064 GatB Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) [Translation, ribosomal structure and biogenesis]
Probab=29.90 E-value=2.6e+02 Score=28.56 Aligned_cols=106 Identities=26% Similarity=0.297 Sum_probs=78.1
Q ss_pred hhHhhHHhHHHHHHHHHHHHhhhhhhhchhhhhhhHhhhhHHHHHhHHHHHhhhhhhHHHHHHHHHHH---H-HHHHHHH
Q 024148 127 TADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRI---E-QDIMQTI 202 (272)
Q Consensus 127 TAeaSAaSAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~lgeQLd~LqK~LqaRE~SQkQLKDeVlri---E-~dIm~Av 202 (272)
++..++...+.|..-|..|++.||+.+-++.+--.. -++|-.|=+.+..-..|.|+-|+-|.++ + .|+-+-|
T Consensus 337 ~~~~~~~~k~~anW~~~el~~~Ln~~~~~i~~~~~~----p~~la~Li~li~~g~IS~k~AK~~v~~~~~~~~~~p~~ii 412 (483)
T COG0064 337 AVKAGADAKLAANWLTNELLGLLNKAGITLEESPLT----PEQLAELIKLIDEGTISGKIAKELVFEILANGGKDPEEII 412 (483)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHhcCCChhhcCCC----HHHHHHHHHHHHcCCccHHHHHHHHHHHHHccCCCHHHHH
Confidence 333444466888999999999999999999865544 4556666677778889999999966554 3 5677777
Q ss_pred HHhcC---CchhHHHHhhhccCcchHHhhhhhhccch
Q 024148 203 AKAGV---NKDCELRKLLDEVSPKNFERINKLLVVKD 236 (272)
Q Consensus 203 akag~---~~d~El~kil~evspkn~e~inkll~~kD 236 (272)
..-|- ..+.+|.++.++|=-.|-+.+-+...=|+
T Consensus 413 e~~gL~qisD~~~l~~~V~evia~Np~~ve~yk~GK~ 449 (483)
T COG0064 413 EEKGLVQISDEGELEKIVDEVLAENPKAVEDYKSGKE 449 (483)
T ss_pred HhcCccccCCHHHHHHHHHHHHHHCHHHHHHHhccHH
Confidence 77774 66779999999998777766655554443
No 162
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=29.90 E-value=4e+02 Score=23.63 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=12.5
Q ss_pred HhhchHHHHHHHHHHHhhhhhhh
Q 024148 78 KAKNMEDEICKLQKTLEERNGRL 100 (272)
Q Consensus 78 kak~ME~Ei~kLqK~Leek~eQL 100 (272)
+|+.++..|..++..+++-.+++
T Consensus 88 ~a~~L~~~i~~l~~~i~~l~~~~ 110 (264)
T PF06008_consen 88 RAQDLEQFIQNLQDNIQELIEQV 110 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555554444
No 163
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=29.43 E-value=2.5e+02 Score=26.00 Aligned_cols=39 Identities=18% Similarity=0.218 Sum_probs=33.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHh
Q 024148 32 DLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETL 70 (272)
Q Consensus 32 DL~EKK~sfRrnvvsLaaELK~~R~rLasQEq~~akEt~ 70 (272)
..-||-..+|.....|.+++...+++++.|+..+.....
T Consensus 177 ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~ 215 (259)
T PF08657_consen 177 GAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNR 215 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 556888899999999999999999999999988876533
No 164
>PF15483 DUF4641: Domain of unknown function (DUF4641)
Probab=28.94 E-value=44 Score=33.80 Aligned_cols=21 Identities=38% Similarity=0.510 Sum_probs=18.0
Q ss_pred HHHHhhhHhhhHHHHHHhhHh
Q 024148 110 YLMQLDGLRSQLAATKATADA 130 (272)
Q Consensus 110 yl~eLD~lRSQLs~TqATAea 130 (272)
+-+|+||||.||++.|+-+|-
T Consensus 423 LQkEIedLreQLaamqsl~~k 443 (445)
T PF15483_consen 423 LQKEIEDLREQLAAMQSLADK 443 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 348999999999999998763
No 165
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=28.83 E-value=2e+02 Score=24.29 Aligned_cols=12 Identities=50% Similarity=0.769 Sum_probs=7.1
Q ss_pred hhHhhhhhhhhH
Q 024148 236 DEEIHKLKDEIK 247 (272)
Q Consensus 236 D~eIakLrdeir 247 (272)
|.+|+.||-+|.
T Consensus 137 ~~ei~~lr~~iE 148 (177)
T PF07798_consen 137 DTEIANLRTEIE 148 (177)
T ss_pred HHHHHHHHHHHH
Confidence 556666666554
No 166
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=28.33 E-value=6.7e+02 Score=25.75 Aligned_cols=36 Identities=19% Similarity=0.283 Sum_probs=30.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Q 024148 31 KDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFV 66 (272)
Q Consensus 31 kDL~EKK~sfRrnvvsLaaELK~~R~rLasQEq~~a 66 (272)
..+..|...-.+-+.||..+|..++.+|...|+-+.
T Consensus 256 ~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~ 291 (726)
T PRK09841 256 QNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLN 291 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778888888999999999999999999887653
No 167
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=27.76 E-value=3.5e+02 Score=22.38 Aligned_cols=22 Identities=14% Similarity=0.151 Sum_probs=12.0
Q ss_pred HHHHhhhHhhhHHHHHHhhHhh
Q 024148 110 YLMQLDGLRSQLAATKATADAS 131 (272)
Q Consensus 110 yl~eLD~lRSQLs~TqATAeaS 131 (272)
.-.||..|++.++..+......
T Consensus 98 l~~eL~~L~~~~t~~el~~~i~ 119 (169)
T PF07106_consen 98 LEAELASLSSEPTNEELREEIE 119 (169)
T ss_pred HHHHHHHHhcCCCHHHHHHHHH
Confidence 4456666666665555444433
No 168
>PRK05658 RNA polymerase sigma factor RpoD; Validated
Probab=27.35 E-value=6.6e+02 Score=25.37 Aligned_cols=61 Identities=16% Similarity=0.337 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCchhHHHHhhhccCcchHHhhhhhhcc----------chhHhhhhhhhhHHHh
Q 024148 188 KDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVV----------KDEEIHKLKDEIKIMS 250 (272)
Q Consensus 188 KDeVlriE~dIm~Avakag~~~d~El~kil~evspkn~e~inkll~~----------kD~eIakLrdeirimS 250 (272)
-+.|..+|+.||.++.++|-... ++.+.+ .-...|...+.+.+.. -.++|.+++..|+-+.
T Consensus 284 ~~rIr~~Er~i~~~~~~~~m~R~-~Fi~~f-~gnEt~~~w~~~~~~~~~~~a~~l~~~~~~I~~lq~~L~~ie 354 (619)
T PRK05658 284 NKRVRGQERELLRLVERLKMPRK-DFLKLF-QGNELDITWLEKEIASGKPWSEFLVRVYDEIKKLQQELEAIE 354 (619)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHH-HHHHHc-cCCcCCHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 35577789999996667665443 445544 2233344444444322 1357777776666553
No 169
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=27.21 E-value=2.4e+02 Score=23.83 Aligned_cols=57 Identities=28% Similarity=0.493 Sum_probs=32.4
Q ss_pred HHHHHHhhhhhhhchhhhhhhHhhhhHHHHHhHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 024148 141 QCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQ 200 (272)
Q Consensus 141 qCl~L~keL~eK~~sLkEhE~rV~~lgeQLd~LqK~LqaRE~SQkQLKDeVlriE~dIm~ 200 (272)
-|.++.++|+.=-.+|..--. .|...||+|..-|..-.--+++.+++|.-+=.|+-+
T Consensus 44 A~~~v~kql~~vs~~l~~tKk---hLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~ 100 (126)
T PF07889_consen 44 AVASVSKQLEQVSESLSSTKK---HLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQ 100 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 356666666554444432222 134556666555555555567888888777776644
No 170
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=27.18 E-value=3.7e+02 Score=22.36 Aligned_cols=43 Identities=21% Similarity=0.284 Sum_probs=33.6
Q ss_pred hhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhhHhhhH
Q 024148 79 AKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQL 121 (272)
Q Consensus 79 ak~ME~Ei~kLqK~Leek~eQL~as~~stEkyl~eLD~lRSQL 121 (272)
...|.+.+....+.|+++.+.|+++....-.++.+++++=..+
T Consensus 140 ~~~~~~~~~~~~~~l~~~lekL~~fd~~~~~~~~~~~~~~~~l 182 (204)
T PF04740_consen 140 SSSFIDSLEKAKKKLQETLEKLRAFDQQSSSIFSEIEELLQAL 182 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4567788888889999999999999887777777776654444
No 171
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=26.60 E-value=3e+02 Score=26.48 Aligned_cols=57 Identities=28% Similarity=0.324 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHhhhhhh
Q 024148 36 KKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGR 99 (272)
Q Consensus 36 KK~sfRrnvvsLaaELK~~R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Leek~eQ 99 (272)
-|.-++.-..-|-+|+.+++.||.+-|--.++ -|.+.+.++.|+.+|.+++.+-..-
T Consensus 150 EkeeL~~eleele~e~ee~~erlk~le~E~s~-------LeE~~~~l~~ev~~L~~r~~ELe~~ 206 (290)
T COG4026 150 EKEELLKELEELEAEYEEVQERLKRLEVENSR-------LEEMLKKLPGEVYDLKKRWDELEPG 206 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhchhHHHHHHHHHHHhccc
Confidence 35556666667777777777777655433321 3445566777888888877665443
No 172
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=26.29 E-value=3.9e+02 Score=22.33 Aligned_cols=77 Identities=19% Similarity=0.223 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhhHhhh
Q 024148 41 RKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQ 120 (272)
Q Consensus 41 RrnvvsLaaELK~~R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Leek~eQL~as~~stEkyl~eLD~lRSQ 120 (272)
|-....|=..+..+..+|...|++ .--.-.----.+.-|...|.+.+++||..|.---..+-..++-|.-.|..
T Consensus 12 Rl~~~~lk~~l~k~~~ql~~ke~l------ge~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keK 85 (177)
T PF13870_consen 12 RLKNITLKHQLAKLEEQLRQKEEL------GEGLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEK 85 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh------cCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455555544444443 22222223345667889999999999988877777777777777777776
Q ss_pred HHH
Q 024148 121 LAA 123 (272)
Q Consensus 121 Ls~ 123 (272)
|..
T Consensus 86 l~~ 88 (177)
T PF13870_consen 86 LHF 88 (177)
T ss_pred HHH
Confidence 654
No 173
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=26.18 E-value=5.5e+02 Score=24.05 Aligned_cols=106 Identities=23% Similarity=0.235 Sum_probs=0.0
Q ss_pred hHHHHHHhhHHHHHHHhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhhHhhhHHHHHHhhHhhHHhHHHHHHHH
Q 024148 63 QCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQC 142 (272)
Q Consensus 63 q~~akEt~tRk~aE~kak~ME~Ei~kLqK~Leek~eQL~as~~stEkyl~eLD~lRSQLs~TqATAeaSAaSAqsaqlqC 142 (272)
+.|.++......-.......+.|+.+|.+.-++-..+|..--..-+....|+..+..++.......+..-. ..
T Consensus 29 ~~fL~~l~~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~-------~~ 101 (314)
T PF04111_consen 29 QEFLKKLEEESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWR-------EY 101 (314)
T ss_dssp -------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH
Q ss_pred HHHHhhhhhhhchhhhhhhHhhhhHHHHHhHHH
Q 024148 143 LALVKELDEKNSSLKEHEDRVTRLGQQLDNLQK 175 (272)
Q Consensus 143 l~L~keL~eK~~sLkEhE~rV~~lgeQLd~LqK 175 (272)
..+-.++.+-...+..=..++.....|||.|+|
T Consensus 102 n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 102 NELQLELIEFQEERDSLKNQYEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 174
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=26.04 E-value=9e+02 Score=26.50 Aligned_cols=159 Identities=19% Similarity=0.325 Sum_probs=82.3
Q ss_pred HHHHhhhhhhhhhhhhhHHHHHHHhhhHhhhHHH-----HHHhhHhhHHhHHHHHHHHHHHHhhhhhhhchhhhhhhHhh
Q 024148 90 QKTLEERNGRLQASACTAEKYLMQLDGLRSQLAA-----TKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVT 164 (272)
Q Consensus 90 qK~Leek~eQL~as~~stEkyl~eLD~lRSQLs~-----TqATAeaSAaSAqsaqlqCl~L~keL~eK~~sLkEhE~rV~ 164 (272)
++...|--.||-+.+-+--.|...+.+|+.+|.. +.-|+-.-..|-.-.+ +..+-..=...|+.+...++
T Consensus 449 ekev~dLe~~l~~~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~-----laQE~~~~~~elKk~qedi~ 523 (786)
T PF05483_consen 449 EKEVHDLEIQLTTIKESEQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQ-----LAQETSDMALELKKQQEDIN 523 (786)
T ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhhhhHHHHHHHHH
Confidence 4455555567777766666688999888887764 2222222222222111 22222222233344444444
Q ss_pred hhHHHHHhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHhhhccCcchHHhhhhhhccchhHhhhhhh
Q 024148 165 RLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKD 244 (272)
Q Consensus 165 ~lgeQLd~LqK~LqaRE~SQkQLKDeVlriE~dIm~Avakag~~~d~El~kil~evspkn~e~inkll~~kD~eIakLrd 244 (272)
.-..|=..+-|.++.=+-.-.|||.++- .|-+.+.+.|. |+-.-| +-|..|+..|-.-..-+|..|.-|..
T Consensus 524 ~~k~qee~~~kqie~Lee~~~~Lrnele----s~~eel~~k~~----Ev~~kl-~ksEen~r~~e~e~~~k~kq~k~len 594 (786)
T PF05483_consen 524 NSKKQEEKMLKQIENLEETNTQLRNELE----SVKEELKQKGE----EVKCKL-DKSEENARSIECEILKKEKQMKILEN 594 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH----HHHHHh-hhHHHhhHHHHHHHhhhHHHHHHHHH
Confidence 4444444444444444555567777664 34445555554 222222 22455666555555566666666666
Q ss_pred hhHHHhhhccchhhhhHH
Q 024148 245 EIKIMSAHWKLKTKELES 262 (272)
Q Consensus 245 eirimSaHW~~KTKELEs 262 (272)
.+--+-..-.+|+|-+|.
T Consensus 595 k~~~LrKqvEnk~K~iee 612 (786)
T PF05483_consen 595 KCNNLRKQVENKNKNIEE 612 (786)
T ss_pred HHHHHHHHHHHHHhHHHH
Confidence 666666666666666554
No 175
>PRK01156 chromosome segregation protein; Provisional
Probab=25.69 E-value=7.5e+02 Score=25.49 Aligned_cols=215 Identities=13% Similarity=0.216 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHhhhhhhhhhhhhhHHH
Q 024148 30 LKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEK 109 (272)
Q Consensus 30 LkDL~EKK~sfRrnvvsLaaELK~~R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Leek~eQL~as~~stEk 109 (272)
+.++-.+....-.++-.+-.++++...++..-+...-..-..-+......+....++..++..+.+..+.+.. ...
T Consensus 582 ~~~~~~~l~e~~~~l~~l~~~l~~le~~~~~~~~~~~~~~~~le~~~~~le~~~~~l~~~~~~i~~~~~~i~~----l~~ 657 (895)
T PRK01156 582 IETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQENKILIEKLRGKIDN----YKK 657 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH
Q ss_pred HHHHhhhHhhhHHHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhchhhhhhhHhhhhHHHHHhHHHHHhhhhhhHHHHHH
Q 024148 110 YLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKD 189 (272)
Q Consensus 110 yl~eLD~lRSQLs~TqATAeaSAaSAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~lgeQLd~LqK~LqaRE~SQkQLKD 189 (272)
=+.+++..+..+....+.-+.-..-.....-.=-.|.+.+....+.+.+.+.++..+.+++..+.+.+.. -+.++.
T Consensus 658 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~~~~~~~~~----l~~~~~ 733 (895)
T PRK01156 658 QIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINETLES----MKKIKK 733 (895)
T ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH----HHHHHH
Q ss_pred HHHHHHHHHHHHHHHhcCCchhHHHHhhhccCcchHHhhhhhhccchhHhhhhhhh-------------hHHHhhhccch
Q 024148 190 EVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDE-------------IKIMSAHWKLK 256 (272)
Q Consensus 190 eVlriE~dIm~Avakag~~~d~El~kil~evspkn~e~inkll~~kD~eIakLrde-------------irimSaHW~~K 256 (272)
.+-.+ ..+..++.++|... .+++.....-...+..+-..+.+..+.|. +.++ +..+|+-|+.+
T Consensus 734 ~~~~l-~~~r~~l~k~~~~~--~I~~~~~~~~~~~~~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~lS~G~~~~ 809 (895)
T PRK01156 734 AIGDL-KRLREAFDKSGVPA--MIRKSASQAMTSLTRKYLFEFNLDFDDID-VDQDFNITVSRGGMVEGIDSLSGGEKTA 809 (895)
T ss_pred HHHHH-HHHHHHhhhccchH--HHHHHHHHHHHHHHHHHHHHhCCCcccee-ecCCeeEEEEeCCccCccccCCHhHHHH
No 176
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=25.67 E-value=7.1e+02 Score=25.20 Aligned_cols=70 Identities=19% Similarity=0.371 Sum_probs=39.8
Q ss_pred cccchhhhhhHHHHHHHHHH--------------HHHHHHHHHHHHhhhhhhhhHHHHHHhhH-HHHHHHhhchHHHHHH
Q 024148 24 REIDPLLKDLNEKKQSFRKN--------------VVSLAAELKEVRTRLASQEQCFVKETLTR-QEAEMKAKNMEDEICK 88 (272)
Q Consensus 24 ~elDPLLkDL~EKK~sfRrn--------------vvsLaaELK~~R~rLasQEq~~akEt~tR-k~aE~kak~ME~Ei~k 88 (272)
..+||.+.+|..+-...++- |+.+-+++.+++..++..-+.+..-..+. ..|..+...++..+.+
T Consensus 284 ~~~~~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~~~~~~L~~~l~~ 363 (754)
T TIGR01005 284 LKLEDLIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIRSELQKITKSLLMQADAAQARESQLVSDVNQ 363 (754)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999998877776654 45555555555555544333332222221 3444555566666666
Q ss_pred HHHHH
Q 024148 89 LQKTL 93 (272)
Q Consensus 89 LqK~L 93 (272)
++..+
T Consensus 364 ~~~~~ 368 (754)
T TIGR01005 364 LKAAS 368 (754)
T ss_pred HHHHH
Confidence 65554
No 177
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=25.51 E-value=3.5e+02 Score=21.55 Aligned_cols=14 Identities=14% Similarity=0.463 Sum_probs=5.3
Q ss_pred CCCCCccccchhhh
Q 024148 18 SSSVPAREIDPLLK 31 (272)
Q Consensus 18 sss~~~~elDPLLk 31 (272)
++-+..-+.|-++.
T Consensus 16 ~~kIa~Vd~~~v~~ 29 (158)
T PF03938_consen 16 SPKIAVVDVDKVFQ 29 (158)
T ss_dssp --CEEEE-HHHHHH
T ss_pred cCcEEEeeHHHHHH
Confidence 34455545554443
No 178
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=25.30 E-value=1.8e+02 Score=23.25 Aligned_cols=53 Identities=19% Similarity=0.184 Sum_probs=40.6
Q ss_pred HhhhhHHHHHhHHHHHhhhhhhHHHHHHHHHHHHH--HHHHHHHHh--cCCchhHHH
Q 024148 162 RVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQ--DIMQTIAKA--GVNKDCELR 214 (272)
Q Consensus 162 rV~~lgeQLd~LqK~LqaRE~SQkQLKDeVlriE~--dIm~Avaka--g~~~d~El~ 214 (272)
+...+..|+..+++.++.-+--..+|+.+|-++.. |..+.+|.. |.-+++|+.
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR~~Lg~vk~gEiv 84 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERARNELGMVKPGETF 84 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHcCCCCCCCEE
Confidence 56677788888888888777778899999999866 688877764 566666654
No 179
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=24.95 E-value=3.4e+02 Score=22.00 Aligned_cols=34 Identities=35% Similarity=0.481 Sum_probs=25.0
Q ss_pred HHHHHhhHHHHHHHhhchHHHHHHHHHHH-hhhhh
Q 024148 65 FVKETLTRQEAEMKAKNMEDEICKLQKTL-EERNG 98 (272)
Q Consensus 65 ~akEt~tRk~aE~kak~ME~Ei~kLqK~L-eek~e 98 (272)
+..|..-|..||.....|+.||..|-..| ++-|.
T Consensus 3 l~~e~~~r~~ae~~~~~ie~ElEeLTasLFeEAN~ 37 (100)
T PF06428_consen 3 LEEERERREEAEQEKEQIESELEELTASLFEEANK 37 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677888888888888888887777 44443
No 180
>KOG3976 consensus Mitochondrial F1F0-ATP synthase, subunit b/ATP4 [Energy production and conversion]
Probab=24.86 E-value=2.1e+02 Score=27.10 Aligned_cols=29 Identities=21% Similarity=0.295 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 024148 39 SFRKNVVSLAAELKEVRTRLASQEQCFVK 67 (272)
Q Consensus 39 sfRrnvvsLaaELK~~R~rLasQEq~~ak 67 (272)
.+|.|++.+|.|.|..=--+.+.|-+..+
T Consensus 180 ~yre~~~~v~~E~K~~lDy~v~~e~~~rr 208 (247)
T KOG3976|consen 180 TYREQLVRVAKEVKRRLDYWVETEASKRR 208 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999988655555555544443
No 181
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=24.61 E-value=4.8e+02 Score=23.36 Aligned_cols=54 Identities=22% Similarity=0.393 Sum_probs=33.9
Q ss_pred HHHHHhhhhhh-hchhhhhhhHhhhhHHHHHhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 024148 142 CLALVKELDEK-NSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKA 205 (272)
Q Consensus 142 Cl~L~keL~eK-~~sLkEhE~rV~~lgeQLd~LqK~LqaRE~SQkQLKDeVlriE~dIm~Avaka 205 (272)
|....|++-+- -..|+.--|-|+.++++|.+.-+ |++.++-.+..++..-+.++
T Consensus 24 ~~~~~kqve~~~l~~lkqqqd~itk~veeLe~~~~----------q~~~~~s~~~~~~vk~L~k~ 78 (165)
T PF09602_consen 24 FASFMKQVEQQTLKKLKQQQDWITKQVEELEKELK----------QFKREFSDLYEEYVKQLRKA 78 (165)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH
Confidence 44444544331 12366666778888887766544 66777777888877777554
No 182
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=24.48 E-value=2e+02 Score=26.53 Aligned_cols=65 Identities=22% Similarity=0.426 Sum_probs=45.2
Q ss_pred HHHHhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHhhhccCcchHHhhhhhhccchhHhhhhhhhhH
Q 024148 168 QQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIK 247 (272)
Q Consensus 168 eQLd~LqK~LqaRE~SQkQLKDeVlriE~dIm~Avakag~~~d~El~kil~evspkn~e~inkll~~kD~eIakLrdeir 247 (272)
+-++.+...|+.++ +.|+|+++|=++|..--..| +..++ -.+||.-++.|.--++.+.+|+..|.
T Consensus 3 e~i~si~~~L~e~d----~~REE~l~lsRei~r~s~~a-------I~~~H----~~~~eeA~~~l~~a~~~v~~Lk~~l~ 67 (204)
T COG2178 3 EEINSIREVLQEKD----KAREEALKLSREIVRLSGEA-------IFLLH----RGDFEEAEKKLKKASEAVEKLKRLLA 67 (204)
T ss_pred hHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH-------HHHHH----hccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44666777777766 67999999999998643333 11112 23488888888888888888887654
No 183
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=24.34 E-value=4.7e+02 Score=22.64 Aligned_cols=93 Identities=24% Similarity=0.282 Sum_probs=0.0
Q ss_pred HHHHHHHhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhhHhhh-------HHHHHHhhHhhHHhHHHHHHHHHH
Q 024148 72 RQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQ-------LAATKATADASAASAQSAQLQCLA 144 (272)
Q Consensus 72 Rk~aE~kak~ME~Ei~kLqK~Leek~eQL~as~~stEkyl~eLD~lRSQ-------Ls~TqATAeaSAaSAqsaqlqCl~ 144 (272)
|...|...+....|+.++.++|..|..+|.--....++.-.+|+..+.+ |....+..+..-.-....--....
T Consensus 66 r~~~E~E~~~~~~el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~~~~~~~~~~Le~iAg 145 (201)
T PF12072_consen 66 RQELERELKERRKELQRLEKRLQQREEQLDRRLEQLEKREEELEKKEEELEQRKEELEEREEELEELIEEQQQELEEIAG 145 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q ss_pred HHhhhhhhhchhhhhhhHhhh
Q 024148 145 LVKELDEKNSSLKEHEDRVTR 165 (272)
Q Consensus 145 L~keL~eK~~sLkEhE~rV~~ 165 (272)
|..+ ..|.-.|..=+..+..
T Consensus 146 lT~e-EAk~~Ll~~le~e~~~ 165 (201)
T PF12072_consen 146 LTAE-EAKEILLEKLEEEARR 165 (201)
T ss_pred CCHH-HHHHHHHHHHHHHHHH
No 184
>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....
Probab=24.33 E-value=86 Score=22.51 Aligned_cols=39 Identities=21% Similarity=0.279 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhc--CCchhHHHHhhhccCcchHHhhhhhh
Q 024148 194 IEQDIMQTIAKAG--VNKDCELRKLLDEVSPKNFERINKLL 232 (272)
Q Consensus 194 iE~dIm~Avakag--~~~d~El~kil~evspkn~e~inkll 232 (272)
||-+|.|+++++| .-.-.||-.-+...+|-+...+.+++
T Consensus 7 veLgI~dii~~~g~~~ls~~eia~~l~~~~p~~~~~L~Rim 47 (51)
T PF08100_consen 7 VELGIPDIIHNAGGGPLSLSEIAARLPTSNPSAPPMLDRIM 47 (51)
T ss_dssp HHTTHHHHHHHHTTS-BEHHHHHHTSTCT-TTHHHHHHHHH
T ss_pred HHcCcHHHHHHcCCCCCCHHHHHHHcCCCCcchHHHHHHHH
Confidence 6789999999998 33456666666656666665555554
No 185
>PF05300 DUF737: Protein of unknown function (DUF737); InterPro: IPR007964 This family consists of several uncharacterised mammalian proteins of unknown function.
Probab=24.10 E-value=5.3e+02 Score=23.14 Aligned_cols=66 Identities=27% Similarity=0.335 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHH--HHHHHHHHhhhhhhhhh
Q 024148 37 KQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDE--ICKLQKTLEERNGRLQA 102 (272)
Q Consensus 37 K~sfRrnvvsLaaELK~~R~rLasQEq~~akEt~tRk~aE~kak~ME~E--i~kLqK~Leek~eQL~a 102 (272)
+.-|.++..+==+=+.+==.||+.-|.--+.|..++-.---++.+=++- ...|.+.|++|+..|..
T Consensus 81 ~e~~~kr~e~eQa~VQeEL~r~a~rEReAa~e~l~~ai~rer~~~~~E~~ka~~la~qLe~ke~el~~ 148 (187)
T PF05300_consen 81 KEELLKRFEQEQAQVQEELARLAQREREAAAEHLTRAILRERASTEQERQKAKQLARQLEEKEAELKK 148 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhcchhHHHHHHHHHHHHHhhHHHHHH
Confidence 3334444333223333333566666666666666654444444433322 23467788888777654
No 186
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=23.89 E-value=6.8e+02 Score=24.37 Aligned_cols=47 Identities=23% Similarity=0.401 Sum_probs=38.5
Q ss_pred hchhhhhhhHhhhhHHHHHhHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 024148 153 NSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIM 199 (272)
Q Consensus 153 ~~sLkEhE~rV~~lgeQLd~LqK~LqaRE~SQkQLKDeVlriE~dIm 199 (272)
+..-.|||.-|++|.-+|+.|.++..+......+|+.|-..+|.-+.
T Consensus 127 ~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE 173 (310)
T PF09755_consen 127 NQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLE 173 (310)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHH
Confidence 33456899999999999999999888888888899999766776543
No 187
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=23.87 E-value=1.7e+02 Score=23.36 Aligned_cols=40 Identities=25% Similarity=0.484 Sum_probs=25.4
Q ss_pred hhhhhhHhhhhHHHHHhH--HHHHhhhhhhHHHHHHHHHHHH
Q 024148 156 LKEHEDRVTRLGQQLDNL--QKDLQARESSQKQLKDEVFRIE 195 (272)
Q Consensus 156 LkEhE~rV~~lgeQLd~L--qK~LqaRE~SQkQLKDeVlriE 195 (272)
+..|+.|+..|...+++| +.|+..=+..-..++-++-.++
T Consensus 44 ~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~ 85 (106)
T PF10805_consen 44 LDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELS 85 (106)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHH
Confidence 456788888888888888 7776644444444444443333
No 188
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=23.72 E-value=3.4e+02 Score=28.57 Aligned_cols=65 Identities=28% Similarity=0.420 Sum_probs=41.1
Q ss_pred HHHHHHH-HhhhhhhhhhhhhhHHHHHHHhhhHhhhHHHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhchh
Q 024148 86 ICKLQKT-LEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSL 156 (272)
Q Consensus 86 i~kLqK~-Leek~eQL~as~~stEkyl~eLD~lRSQLs~TqATAeaSAaSAqsaqlqCl~L~keL~eK~~sL 156 (272)
++|+||. |-.--.||---+-.|..|+-.|.++-.|+ .+-+..--.+--.||-+|+..|+.++.-|
T Consensus 266 ~~k~hksqls~al~~lsdrak~a~e~l~~lr~m~~~i------q~n~~ef~a~l~~q~d~lid~l~~rk~ql 331 (699)
T KOG4367|consen 266 MWKLHKSQLSQALNGLSDRAKEAKEFLVQLRNMVQQI------QENSVEFEACLVAQCDALIDALNRRKAQL 331 (699)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667663 33334455555556666776666665544 34444444556689999999999877655
No 189
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=23.65 E-value=2.8e+02 Score=19.87 Aligned_cols=74 Identities=22% Similarity=0.297 Sum_probs=38.7
Q ss_pred hhHHhHHHHHHHHHHHHhhhhhhhchhhhhhhHhhhhHHHHHhHHHHHhh----hhhhHHHHHHHHHHHHHHHHHHHH
Q 024148 130 ASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQA----RESSQKQLKDEVFRIEQDIMQTIA 203 (272)
Q Consensus 130 aSAaSAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~lgeQLd~LqK~Lqa----RE~SQkQLKDeVlriE~dIm~Ava 203 (272)
.|+......+-.+..|...+......+...+..|....+.|-...+++.. ++==....+.+..+-|...||.++
T Consensus 42 ~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k~~e~L~e~~~~~~~~~~~r~Eq~~lDE~a 119 (123)
T PF02050_consen 42 VSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRERKKLEKLKERRREEYQQEEERREQKELDEIA 119 (123)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555555555555555555555444443332 111223555667777777777664
No 190
>PRK14143 heat shock protein GrpE; Provisional
Probab=23.62 E-value=5.8e+02 Score=23.49 Aligned_cols=26 Identities=15% Similarity=0.152 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHhhh
Q 024148 193 RIEQDIMQTIAKAGVNKDCELRKLLD 218 (272)
Q Consensus 193 riE~dIm~Avakag~~~d~El~kil~ 218 (272)
|.++++-++...|..+.--+|+.++|
T Consensus 103 R~~kE~e~~~~~a~~~~~~~lLpV~D 128 (238)
T PRK14143 103 RTSREQEDLRLQLKCNTLSEILPVVD 128 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444444444444444444443
No 191
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=23.58 E-value=4.6e+02 Score=22.29 Aligned_cols=29 Identities=24% Similarity=0.355 Sum_probs=18.4
Q ss_pred HhhhhhhhchhhhhhhHhhhhHHHHHhHHHH
Q 024148 146 VKELDEKNSSLKEHEDRVTRLGQQLDNLQKD 176 (272)
Q Consensus 146 ~keL~eK~~sLkEhE~rV~~lgeQLd~LqK~ 176 (272)
.+-||-..-.|. ++.+.-|.+||..|++.
T Consensus 103 ~allD~d~l~l~--~dg~~Gldeqi~~lkes 131 (155)
T PF06810_consen 103 KALLDLDKLKLD--DDGLKGLDEQIKALKES 131 (155)
T ss_pred HHhcCHHHeeeC--CCccccHHHHHHHHHhc
Confidence 344444443444 44489999999998863
No 192
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=23.39 E-value=5.4e+02 Score=23.03 Aligned_cols=13 Identities=15% Similarity=0.041 Sum_probs=5.8
Q ss_pred hhHHHHHhHHHHH
Q 024148 165 RLGQQLDNLQKDL 177 (272)
Q Consensus 165 ~lgeQLd~LqK~L 177 (272)
-+...+.-|+.-.
T Consensus 243 G~l~R~~Al~~L~ 255 (301)
T PF14362_consen 243 GFLARLEALWELT 255 (301)
T ss_pred CHHHHHHHHHHHH
Confidence 3444444444433
No 193
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=23.26 E-value=5.8e+02 Score=23.35 Aligned_cols=55 Identities=13% Similarity=0.160 Sum_probs=31.2
Q ss_pred hHHHHHHHhhchHHHHHHHHHHHhhhhhhhhhhhh---------hHHHHHHHhhhHhhhHHHHH
Q 024148 71 TRQEAEMKAKNMEDEICKLQKTLEERNGRLQASAC---------TAEKYLMQLDGLRSQLAATK 125 (272)
Q Consensus 71 tRk~aE~kak~ME~Ei~kLqK~Leek~eQL~as~~---------stEkyl~eLD~lRSQLs~Tq 125 (272)
+++.+.....-++.++.++++.|.+-..+|..+-. .+.....-+..|+.|+...+
T Consensus 164 ~~~~~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~ 227 (362)
T TIGR01010 164 NERARKDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQ 227 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555566777777777777766666555432 12334455666666655444
No 194
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=23.15 E-value=1e+03 Score=26.12 Aligned_cols=142 Identities=25% Similarity=0.371 Sum_probs=86.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhH-HHHHHHhhchHHHHHHHHH---HHhhhhhhhhhhhhhH
Q 024148 32 DLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTR-QEAEMKAKNMEDEICKLQK---TLEERNGRLQASACTA 107 (272)
Q Consensus 32 DL~EKK~sfRrnvvsLaaELK~~R~rLasQEq~~akEt~tR-k~aE~kak~ME~Ei~kLqK---~Leek~eQL~as~~st 107 (272)
.|-+.+.-+|-.+-|+--|++..+. |..+. ...|..+|..|-||.+..| +|+.+---|+...-.-
T Consensus 538 ~Lee~~~~Lrneles~~eel~~k~~-----------Ev~~kl~ksEen~r~~e~e~~~k~kq~k~lenk~~~LrKqvEnk 606 (786)
T PF05483_consen 538 NLEETNTQLRNELESVKEELKQKGE-----------EVKCKLDKSEENARSIECEILKKEKQMKILENKCNNLRKQVENK 606 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3555556666555566555555443 22222 3456667777777765543 4555555555554444
Q ss_pred HHHHHHh----hhHhhhHHHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhchhhhhhhHhhh-hHHHHHhHHHHHhhhhh
Q 024148 108 EKYLMQL----DGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTR-LGQQLDNLQKDLQARES 182 (272)
Q Consensus 108 Ekyl~eL----D~lRSQLs~TqATAeaSAaSAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~-lgeQLd~LqK~LqaRE~ 182 (272)
.+|+.+| ..|.-|+ +|.++++.++ .-|.+.|.+-=..+++ .+|-.|.++++++.+..
T Consensus 607 ~K~ieeLqqeNk~LKKk~---------~aE~kq~~~~---------eikVn~L~~E~e~~kk~~eE~~~~~~keie~K~~ 668 (786)
T PF05483_consen 607 NKNIEELQQENKALKKKI---------TAESKQSNVY---------EIKVNKLQEELENLKKKHEEETDKYQKEIESKSI 668 (786)
T ss_pred HhHHHHHHHHHHHHHHHH---------HHHHHHHHHH---------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Confidence 5555444 4444443 2344454433 3356666655555555 78889999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 024148 183 SQKQLKDEVFRIEQDIMQTI 202 (272)
Q Consensus 183 SQkQLKDeVlriE~dIm~Av 202 (272)
|.-.|-.||-+.-.-..+||
T Consensus 669 ~e~~L~~EveK~k~~a~EAv 688 (786)
T PF05483_consen 669 SEEELLGEVEKAKLTADEAV 688 (786)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 99999999877655555555
No 195
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=22.50 E-value=1.1e+02 Score=23.57 Aligned_cols=98 Identities=17% Similarity=0.295 Sum_probs=14.5
Q ss_pred HHHhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhhHhhhHHHHHHhhHhhHHhHHHHHHHHHHHHhhhhh-hhc
Q 024148 76 EMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDE-KNS 154 (272)
Q Consensus 76 E~kak~ME~Ei~kLqK~Leek~eQL~as~~stEkyl~eLD~lRSQLs~TqATAeaSAaSAqsaqlqCl~L~keL~e-K~~ 154 (272)
..-...+..++..|.+...+-..++..-......|-...+.|+..|..++.+++--...|...- -.++..-.. -..
T Consensus 24 D~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~aq~~a~~~~~~A~~eA---~~i~~~A~~~a~~ 100 (131)
T PF05103_consen 24 DDFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQAQETADEIKAEAEEEA---EEIIEEAQKEAEE 100 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT-------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 3334445555555555444444444444444455666778888889888888877665554421 112222222 122
Q ss_pred hhhhhhhHhhhhHHHHHhHHHH
Q 024148 155 SLKEHEDRVTRLGQQLDNLQKD 176 (272)
Q Consensus 155 sLkEhE~rV~~lgeQLd~LqK~ 176 (272)
-+.+-...+.++..+++.|+..
T Consensus 101 i~~~A~~~~~~l~~~~~~lk~~ 122 (131)
T PF05103_consen 101 IIEEARAEAERLREEIEELKRQ 122 (131)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555666666666655543
No 196
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=22.43 E-value=6.5e+02 Score=24.86 Aligned_cols=64 Identities=14% Similarity=0.210 Sum_probs=38.1
Q ss_pred hhhhhhHhhhhHHHHHhHHHHH-hhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHhhhcc
Q 024148 156 LKEHEDRVTRLGQQLDNLQKDL-QARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEV 220 (272)
Q Consensus 156 LkEhE~rV~~lgeQLd~LqK~L-qaRE~SQkQLKDeVlriE~dIm~Avakag~~~d~El~kil~ev 220 (272)
..+.+.|+..+.++.+...+.- ..++ -.+.++.+++..|++-+....+.|.=.|.-++.++.+.
T Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~er~~l~~~~~~~~i~~~~~~~~~~~l 516 (525)
T TIGR00831 452 LPELDARIEELRADGEEKIRSGMGEKN-LRRRARLYVLDAKRSAVVDLRAGGLISQEVLLELMREL 516 (525)
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhh-HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHh
Confidence 4445555555554443322111 1111 13468899999999999888888766666666666554
No 197
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=22.07 E-value=6e+02 Score=23.07 Aligned_cols=53 Identities=28% Similarity=0.350 Sum_probs=32.7
Q ss_pred chHHHHHHHHHHH---hhhhhhhhhhhhhHHHHHHHhhhHhhhHHHHHHhhHhhHH
Q 024148 81 NMEDEICKLQKTL---EERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAA 133 (272)
Q Consensus 81 ~ME~Ei~kLqK~L---eek~eQL~as~~stEkyl~eLD~lRSQLs~TqATAeaSAa 133 (272)
+.|+.+.-++.-+ .+...+|+.+...++.=+.++...+..+-++.+++.|+..
T Consensus 96 ~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~ 151 (225)
T COG1842 96 SLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQEK 151 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444433 3455667777777777777777777777777766666544
No 198
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=22.00 E-value=5.2e+02 Score=22.27 Aligned_cols=53 Identities=23% Similarity=0.208 Sum_probs=43.4
Q ss_pred HHHHHHhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhhHhhhHHHHH
Q 024148 73 QEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATK 125 (272)
Q Consensus 73 k~aE~kak~ME~Ei~kLqK~Leek~eQL~as~~stEkyl~eLD~lRSQLs~Tq 125 (272)
+..+...|..+.++.++|+.+...-.++.-+-..-++..++.+..+.++.-+.
T Consensus 101 ~~~~~~rK~~~~~~~kl~~~~~~~~~~l~kskk~Y~~~~ke~~~a~~k~~~~~ 153 (251)
T cd07653 101 SELRQERKKHLSEGSKLQQKLESSIKQLEKSKKAYEKAFKEAEKAKQKYEKAD 153 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33467778899999999999999999998888888888888888887775443
No 199
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=21.95 E-value=4.3e+02 Score=21.75 Aligned_cols=50 Identities=20% Similarity=0.284 Sum_probs=19.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhch
Q 024148 31 KDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNM 82 (272)
Q Consensus 31 kDL~EKK~sfRrnvvsLaaELK~~R~rLasQEq~~akEt~tRk~aE~kak~M 82 (272)
.||.....-=...+..+..-|+....+|..- +...-+|.+ +..+-|.|.+
T Consensus 33 ~dL~~R~~~Q~~~~~~~~~~l~~i~~~l~~L-~~~~~~~~~-rl~~~r~r~~ 82 (141)
T PF13874_consen 33 EDLKKRVEAQEEEIAQHRERLKEINDKLEEL-QKHDLETSA-RLEEARRRHQ 82 (141)
T ss_dssp -------------HHHHHHHHHHHHHHHHHH-HHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHH-HHHHHHHHHH
Confidence 4566555555566666666666666666655 444333333 3334444443
No 200
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=21.71 E-value=4.2e+02 Score=21.09 Aligned_cols=50 Identities=24% Similarity=0.446 Sum_probs=34.8
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhch--HHHHHHHHHHHhhhhhhhhhhh
Q 024148 48 AAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNM--EDEICKLQKTLEERNGRLQASA 104 (272)
Q Consensus 48 aaELK~~R~rLasQEq~~akEt~tRk~aE~kak~M--E~Ei~kLqK~Leek~eQL~as~ 104 (272)
..++..+..++...+.-+ ...|++.++| -++|++|+..+.+-++.+.+-.
T Consensus 34 ~~~~~~l~~~~~~~~~Rl-------~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~ 85 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRL-------QALETKLEHLPTRDDVHDLQLELAELRGELKELS 85 (106)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHH
Confidence 455556655555544433 3478888889 8999999998888887766543
No 201
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=21.62 E-value=2.4e+02 Score=26.01 Aligned_cols=83 Identities=27% Similarity=0.503 Sum_probs=61.4
Q ss_pred hHhhhhHHHHHhHHHHHhhhhhhHHHHHHHHHHHHHHH--HHHHHHhcCCchhHHHHhhhccCcchHHhhhhhhccchhH
Q 024148 161 DRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDI--MQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEE 238 (272)
Q Consensus 161 ~rV~~lgeQLd~LqK~LqaRE~SQkQLKDeVlriE~dI--m~Avakag~~~d~El~kil~evspkn~e~inkll~~kD~e 238 (272)
++|.+|-.-|-.||---+-||--.+.|| .++|+++ +.+=.+.|.... ...++-|...+-..|-=|++-
T Consensus 3 ekv~~LQ~AL~~LQaa~ekRE~lE~rLR---~~lE~EL~~lr~qq~~~~~~~-------~~~~~~~~~~L~~~LrEkEEr 72 (205)
T PF12240_consen 3 EKVERLQQALAQLQAACEKREQLERRLR---TRLERELESLRAQQRQGNSSG-------SSSPSNNASNLKELLREKEER 72 (205)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhccCCCCC-------CCCCCCcHHHHHHHHHHHHHH
Confidence 5788999999999999999999999988 5677776 444434332211 112224777888888889999
Q ss_pred hhhhhhhhHHHhhhccchh
Q 024148 239 IHKLKDEIKIMSAHWKLKT 257 (272)
Q Consensus 239 IakLrdeirimSaHW~~KT 257 (272)
|=.|.-|+ ++|.-|-
T Consensus 73 ILaLEad~----~kWEqkY 87 (205)
T PF12240_consen 73 ILALEADM----TKWEQKY 87 (205)
T ss_pred HHHHHHHH----HHHHHHH
Confidence 98888886 6898776
No 202
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=21.58 E-value=1.1e+03 Score=26.07 Aligned_cols=53 Identities=21% Similarity=0.346 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCchhHHHHhhhccCcchHHhhhhhhcc----chhHhhhhhhhhHH
Q 024148 186 QLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVV----KDEEIHKLKDEIKI 248 (272)
Q Consensus 186 QLKDeVlriE~dIm~Avakag~~~d~El~kil~evspkn~e~inkll~~----kD~eIakLrdeiri 248 (272)
|+-+|.-||--|+=+|+++...-+ ..-.-.|+=|++|.+ +|.||.||++=.|=
T Consensus 491 ~~d~e~~rik~ev~eal~~~k~~q----------~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~ 547 (861)
T PF15254_consen 491 QFDIETTRIKIEVEEALVNVKSLQ----------FKLEASEKENQILGITLRQRDAEIERLRELTRT 547 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh----------hhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHH
Confidence 444455555556666665543111 112234666777665 79999999986653
No 203
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=21.46 E-value=2.8e+02 Score=18.98 Aligned_cols=83 Identities=17% Similarity=0.256 Sum_probs=37.0
Q ss_pred HHHHHHhhhHhhhHHHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhchhhhhhhHhhhhHHHHHhHHHHHhhhhhhHHHH
Q 024148 108 EKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQL 187 (272)
Q Consensus 108 Ekyl~eLD~lRSQLs~TqATAeaSAaSAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~lgeQLd~LqK~LqaRE~SQkQL 187 (272)
.+|..++++|-.-|..+.+.-..... ..-.-.+..+++.+..-...+..|+.+|+.|-+.-+.|. .. ....-..+
T Consensus 4 ~~f~~~~~~l~~Wl~~~e~~l~~~~~--~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~-~~--~~~~~~~i 78 (105)
T PF00435_consen 4 QQFQQEADELLDWLQETEAKLSSSEP--GSDLEELEEQLKKHKELQEEIESRQERLESLNEQAQQLI-DS--GPEDSDEI 78 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSCTH--SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HT--THTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCC--CCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH-Hc--CCCcHHHH
Confidence 45667777777766666655411111 000111222233333333344555556655555555542 11 13333455
Q ss_pred HHHHHHHH
Q 024148 188 KDEVFRIE 195 (272)
Q Consensus 188 KDeVlriE 195 (272)
++.+-.|.
T Consensus 79 ~~~~~~l~ 86 (105)
T PF00435_consen 79 QEKLEELN 86 (105)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55544444
No 204
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=21.28 E-value=1.4e+03 Score=27.04 Aligned_cols=60 Identities=20% Similarity=0.184 Sum_probs=35.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHHHH
Q 024148 30 LKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKL 89 (272)
Q Consensus 30 LkDL~EKK~sfRrnvvsLaaELK~~R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~kL 89 (272)
+.+|.++-+.-=+.+--+.+=|-.-++-++.-|++...--.+|+.||.--..||+=+.-|
T Consensus 1513 i~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL 1572 (1758)
T KOG0994|consen 1513 IQQLTGEIQERVASLPNVDAILSRTKGDIARAENLQSEAERARSRAEDVKGQAEDVVEAL 1572 (1758)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 345554432222222223455666667777777777666667778887777777655444
No 205
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=21.27 E-value=1.1e+02 Score=26.21 Aligned_cols=25 Identities=24% Similarity=0.226 Sum_probs=16.5
Q ss_pred HHHHHHhhhHhhhHHHHHHhhHhhH
Q 024148 108 EKYLMQLDGLRSQLAATKATADASA 132 (272)
Q Consensus 108 Ekyl~eLD~lRSQLs~TqATAeaSA 132 (272)
+++-.||+.|+..++.+++.+|-|-
T Consensus 37 ~~L~~El~~L~~~i~~Ar~~GDlsE 61 (160)
T PRK06342 37 KALEDQLAQARAAYEAAQAIEDVNE 61 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHCCChhH
Confidence 4455777777766666666666555
No 206
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=21.10 E-value=1.3e+03 Score=26.49 Aligned_cols=138 Identities=16% Similarity=0.263 Sum_probs=73.4
Q ss_pred HHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhhHhhhHHHHHHhh
Q 024148 49 AELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATA 128 (272)
Q Consensus 49 aELK~~R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Leek~eQL~as~~stEkyl~eLD~lRSQLs~TqATA 128 (272)
..|+.-|.||-.|=.-.. . +...++..|--|+-|...|.-.--++.+.--+-+++..||...-+++.-.
T Consensus 655 ~~L~~~k~rl~eel~ei~----~---~~~e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~---- 723 (1141)
T KOG0018|consen 655 DQLKEKKERLLEELKEIQ----K---RRKEVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEF---- 723 (1141)
T ss_pred HHHHHHHHHHHHHHHHHH----H---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----
Confidence 457777777765533222 2 22256666677777777766555555555555566666666555555411
Q ss_pred HhhHHhHHHHHHHHHHHHhhhhhhhchhhhhhhHhhhhHHHHHh--H------HHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 024148 129 DASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDN--L------QKDLQARESSQKQLKDEVFRIEQDIMQ 200 (272)
Q Consensus 129 eaSAaSAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~lgeQLd~--L------qK~LqaRE~SQkQLKDeVlriE~dIm~ 200 (272)
-+.+-| +...|+..-+.+++-+.++|.+..-.=- - =+..+-++. +.++-++.+..|.+|..
T Consensus 724 --------~p~i~~--i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~igv~ir~Yee~~~-~~~~a~k~~ef~~q~~~ 792 (1141)
T KOG0018|consen 724 --------GPEISE--IKRKLQNREGEMKELEERMNKVEDRIFKGFCRRIGVRIREYEEREL-QQEFAKKRLEFENQKAK 792 (1141)
T ss_pred --------CchHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCeeeehHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 122222 3346666666666666666666543210 0 011223333 55566666777777665
Q ss_pred HHHHhcCC
Q 024148 201 TIAKAGVN 208 (272)
Q Consensus 201 Avakag~~ 208 (272)
.--+-.+-
T Consensus 793 l~~~l~fe 800 (1141)
T KOG0018|consen 793 LENQLDFE 800 (1141)
T ss_pred Hhhhhhhe
Confidence 54444433
No 207
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=20.83 E-value=4.7e+02 Score=25.32 Aligned_cols=48 Identities=29% Similarity=0.518 Sum_probs=35.6
Q ss_pred hhHHhHHHHHHHHHHHHhhhhhhhchhhhhhhHhhh-hHHHHHhHHHHHh
Q 024148 130 ASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTR-LGQQLDNLQKDLQ 178 (272)
Q Consensus 130 aSAaSAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~-lgeQLd~LqK~Lq 178 (272)
++++|+.--+.-|.+|+.-+|||+-.|. |--+.|+ ||-.+-.|.+-|+
T Consensus 269 ~~~~s~sdLksl~~aLle~indK~~al~-Hqr~tNkILg~rv~ELE~kl~ 317 (319)
T PF09789_consen 269 ASPQSISDLKSLATALLETINDKNLALQ-HQRKTNKILGNRVAELEKKLK 317 (319)
T ss_pred CCcchHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHh
Confidence 3455666677889999999999999985 6666665 5666666666554
No 208
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=20.79 E-value=5.7e+02 Score=22.30 Aligned_cols=20 Identities=15% Similarity=0.260 Sum_probs=10.0
Q ss_pred hhHhhhhHHHHHhHHHHHhh
Q 024148 160 EDRVTRLGQQLDNLQKDLQA 179 (272)
Q Consensus 160 E~rV~~lgeQLd~LqK~Lqa 179 (272)
-+-+|+....+..|+.++..
T Consensus 148 ~~~anrwTDNI~~l~~~~~~ 167 (188)
T PF03962_consen 148 KEAANRWTDNIFSLKSYLKK 167 (188)
T ss_pred HHHHHHHHhhHHHHHHHHHH
Confidence 33445555555555555544
No 209
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=20.69 E-value=3.8e+02 Score=24.81 Aligned_cols=33 Identities=33% Similarity=0.439 Sum_probs=19.1
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024148 27 DPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLA 59 (272)
Q Consensus 27 DPLLkDL~EKK~sfRrnvvsLaaELK~~R~rLa 59 (272)
|-=.--|.||++++....-++.||+|..-.-|.
T Consensus 85 d~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt 117 (201)
T KOG4603|consen 85 DGKIVALTEKVQSLQQTCSYVEAEIKELSSALT 117 (201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 333445666666666666666666666554443
No 210
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=20.51 E-value=5.4e+02 Score=21.91 Aligned_cols=84 Identities=21% Similarity=0.300 Sum_probs=0.0
Q ss_pred HHHHhhhhhhhhHHHHHHhhH-HHHHHHhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhhHhhhHHHHHHhhHh
Q 024148 52 KEVRTRLASQEQCFVKETLTR-QEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADA 130 (272)
Q Consensus 52 K~~R~rLasQEq~~akEt~tR-k~aE~kak~ME~Ei~kLqK~Leek~eQL~as~~stEkyl~eLD~lRSQLs~TqATAea 130 (272)
+.|+.=|..-+.-+|++...| +..+..+..++..+..+......-..+|...-.--..+-.+.+.|+.+..+++|+...
T Consensus 72 ~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~ 151 (221)
T PF04012_consen 72 KQAELALAAGREDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKV 151 (221)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHhH
Q 024148 131 SAASA 135 (272)
Q Consensus 131 SAaSA 135 (272)
.....
T Consensus 152 ~~~~~ 156 (221)
T PF04012_consen 152 NEALA 156 (221)
T ss_pred HHHhc
No 211
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=20.44 E-value=7.5e+02 Score=23.56 Aligned_cols=99 Identities=21% Similarity=0.294 Sum_probs=65.1
Q ss_pred ccccchhhhhhHHHHHHHHH--------------HHHHHHHHHHHHHhhhhhhhhHHHHHHhhH-HHHHHHhhchHHHHH
Q 024148 23 AREIDPLLKDLNEKKQSFRK--------------NVVSLAAELKEVRTRLASQEQCFVKETLTR-QEAEMKAKNMEDEIC 87 (272)
Q Consensus 23 ~~elDPLLkDL~EKK~sfRr--------------nvvsLaaELK~~R~rLasQEq~~akEt~tR-k~aE~kak~ME~Ei~ 87 (272)
..--+|.+.||.++...++. +++.+.+++.+++..++.--+-+..-..+. +.++.+-..++.++.
T Consensus 280 ~~~~s~~i~~Lr~~~~~~~~~~~~l~~~~~~~~p~~~~~~~q~~~~~~~~~~e~~~~~~~~~~~~~~l~~~~~~L~~~~~ 359 (458)
T COG3206 280 EVLESPTIQDLRQQYAQVRQQIADLSTELGAKHPQLVALEAQLAELRQQIAAELRQILASLPNELALLEQQEAALEKELA 359 (458)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHhhcccChHHHhHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHH
Confidence 34456889999888888763 455556666666666655555555544553 667788788888888
Q ss_pred HHHHHHhh----------hhhhhhhhhhhHHHHHHHhhhHhhhH
Q 024148 88 KLQKTLEE----------RNGRLQASACTAEKYLMQLDGLRSQL 121 (272)
Q Consensus 88 kLqK~Lee----------k~eQL~as~~stEkyl~eLD~lRSQL 121 (272)
.+.+.+.. -.-++++.-..-+.||.-...+..|-
T Consensus 360 ~l~~~~~~~~~~~~~l~~L~Re~~~~r~~ye~lL~r~qe~~~~~ 403 (458)
T COG3206 360 QLKGRLSKLPKLQVQLRELEREAEAARSLYETLLQRYQELSIQE 403 (458)
T ss_pred HHHHHHhhchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 87776654 33445566666677777766666665
No 212
>cd08313 Death_TNFR1 Death domain of Tumor Necrosis Factor Receptor 1. Death Domain (DD) found in tumor necrosis factor receptor-1 (TNFR-1). TNFR-1 has many names including TNFRSF1A, CD120a, p55, p60, and TNFR60. It activates two major intracellular signaling pathways that lead to the activation of the transcription factor NF-kB and the induction of cell death. Upon binding of its ligand TNF, TNFR-1 trimerizes which leads to the recruitment of an adaptor protein named TNFR-associated death domain protein (TRADD) through a DD/DD interaction. Mutations in the TNFRSF1A gene causes TNFR-associated periodic syndrome (TRAPS), a rare disorder characterized recurrent fever, myalgia, abdominal pain, conjunctivitis and skin eruptions. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation a
Probab=20.29 E-value=80 Score=24.50 Aligned_cols=33 Identities=30% Similarity=0.565 Sum_probs=28.5
Q ss_pred HHHhhhccCcchHHhhhhhhccchhHhhhhhhh
Q 024148 213 LRKLLDEVSPKNFERINKLLVVKDEEIHKLKDE 245 (272)
Q Consensus 213 l~kil~evspkn~e~inkll~~kD~eIakLrde 245 (272)
|-.+.++|+|++...+-+-|.+.|.+|.....+
T Consensus 2 ~y~v~d~v~~~~wk~~~R~LGlse~~Id~ie~~ 34 (80)
T cd08313 2 LYTVLDEVPPRRWKEFVRRLGLSDNEIERVELD 34 (80)
T ss_pred HHHHHHhCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 557889999999999999999999999866543
No 213
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=20.19 E-value=1.2e+02 Score=33.36 Aligned_cols=95 Identities=25% Similarity=0.271 Sum_probs=0.0
Q ss_pred hhhhHhhhhHHHHHhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHhhhccCcchHHhhhhhhccchh
Q 024148 158 EHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDE 237 (272)
Q Consensus 158 EhE~rV~~lgeQLd~LqK~LqaRE~SQkQLKDeVlriE~dIm~Avakag~~~d~El~kil~evspkn~e~inkll~~kD~ 237 (272)
+|-.+.++++-+|..+.|+| ..|+.+.|-..+=-..+.++..........+-.+++| .+ .
T Consensus 464 ~~~~~q~~ls~el~el~k~l--------~~Ke~l~rr~~~~~~~~~~~~~~~e~~~~~le~e~~~--le----------~ 523 (913)
T KOG0244|consen 464 GHPQKQGSLSGELSELEKRL--------AEKEPLTRRKAYEKAEKSKAKEQYESDSGTLEAEKSP--LE----------S 523 (913)
T ss_pred cchHHHhhhhHHHHHHHhhh--------ccccHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHhcc--cc----------c
Q ss_pred HhhhhhhhhHHHhh-------hccchhhhhHHhhhhcccccC
Q 024148 238 EIHKLKDEIKIMSA-------HWKLKTKELESQRSNGEQIRN 272 (272)
Q Consensus 238 eIakLrdeirimSa-------HW~~KTKELEsQlek~~~i~~ 272 (272)
|.-+|++|+..+-. |...|-|.||+|..+-..-++
T Consensus 524 E~~~l~~el~~~~~~~~kl~eer~qklk~le~q~s~lkk~l~ 565 (913)
T KOG0244|consen 524 ERSRLRNELNVFNRLAAKLGEERVQKLKSLETQISLLKKKLS 565 (913)
T ss_pred ccHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHHHHHHHHhhH
No 214
>PF01813 ATP-synt_D: ATP synthase subunit D ; InterPro: IPR002699 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the D subunit found in V1 and A1 complexes of V- and A-ATPases, respectively. Subunit D appears to be located in the central stalk, whereas subunits E and G form part of the peripheral stalk connecting V1 and V0. This subunit is the most likely homologue to the gamma subunit of the F1 complex in F-ATPases, which undergoes rotation during ATP hydrolysis and serves an essential function in rotary catalysis [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0042626 ATPase activity, coupled to transmembrane movement of substances, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3A5C_G 3A5D_G 3J0J_G 3AON_A.
Probab=20.15 E-value=3.6e+02 Score=22.97 Aligned_cols=72 Identities=24% Similarity=0.274 Sum_probs=35.7
Q ss_pred CCCCCCCCccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHh
Q 024148 15 SSSSSSVPAREIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLE 94 (272)
Q Consensus 15 ~~~sss~~~~elDPLLkDL~EKK~sfRrnvvsLaaELK~~R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Le 94 (272)
+.++.+|+.....|-+.+..++ |++-+ +.-.++|+ .|+....+..||.+-+++.+
T Consensus 104 ~~~~~~y~~~~~~~~~d~a~~~---~~~~l--------~~~i~lA~--------------~e~~~~~L~~ei~kT~RRVN 158 (196)
T PF01813_consen 104 PFPSPPYGLLGTPPWLDEAREK---FEELL--------ELLIELAE--------------LETALRRLAEEIRKTQRRVN 158 (196)
T ss_dssp TTS------TT--HHHHHHHHH---HHHHH--------HHHHCHHH--------------HHHHHHHHCHHHHHHCHHHH
T ss_pred ccccccCCcccCCHHHHHHHHH---HHHHH--------HHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH
Confidence 3556677777777777665543 33322 22233433 45556677888888887777
Q ss_pred hhhhhhhhhhhhHHHHH
Q 024148 95 ERNGRLQASACTAEKYL 111 (272)
Q Consensus 95 ek~eQL~as~~stEkyl 111 (272)
-=..-+--....|-+|+
T Consensus 159 ALE~vlIP~l~~tik~I 175 (196)
T PF01813_consen 159 ALEKVLIPRLEETIKYI 175 (196)
T ss_dssp HHHHCHHHHHCHHHHHH
T ss_pred HHHhhhccchHHHHHHH
Confidence 65554444444455544
Done!