Query 024148
Match_columns 272
No_of_seqs 21 out of 23
Neff 2.1
Searched_HMMs 29240
Date Mon Mar 25 03:13:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024148.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024148hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1i84_S Smooth muscle myosin he 95.3 0.053 1.8E-06 55.2 8.9 15 40-54 869-883 (1184)
2 1i84_S Smooth muscle myosin he 93.0 0.32 1.1E-05 49.5 9.0 9 84-92 927-935 (1184)
3 2fxo_A Myosin heavy chain, car 90.6 5.2 0.00018 31.4 13.0 28 67-94 31-58 (129)
4 3vkg_A Dynein heavy chain, cyt 88.1 25 0.00085 40.7 18.9 119 77-195 1927-2069(3245)
5 3na7_A HP0958; flagellar bioge 86.5 14 0.00048 31.3 17.7 71 31-101 14-84 (256)
6 3vkg_A Dynein heavy chain, cyt 86.4 49 0.0017 38.4 19.9 31 99-129 1928-1958(3245)
7 3oja_B Anopheles plasmodium-re 85.2 21 0.00073 32.2 14.5 45 164-208 540-584 (597)
8 1t6f_A Geminin; coiled-coil, c 84.3 0.31 1.1E-05 33.2 1.0 21 226-246 10-30 (37)
9 2v71_A Nuclear distribution pr 78.4 32 0.0011 29.6 11.9 120 81-200 46-181 (189)
10 2fxo_A Myosin heavy chain, car 77.0 24 0.00083 27.5 14.7 92 79-170 15-106 (129)
11 3ghg_A Fibrinogen alpha chain; 76.9 14 0.00047 36.8 10.0 44 183-226 139-194 (562)
12 3cve_A Homer protein homolog 1 75.8 9.9 0.00034 28.5 6.8 51 73-123 10-67 (72)
13 1deq_A Fibrinogen (alpha chain 75.5 18 0.00062 34.5 10.1 48 151-198 99-157 (390)
14 2eqb_B RAB guanine nucleotide 72.8 33 0.0011 27.0 11.0 75 49-123 19-94 (97)
15 3nmd_A CGMP dependent protein 72.0 6.6 0.00023 29.6 5.1 31 83-120 39-69 (72)
16 2dfs_A Myosin-5A; myosin-V, in 71.9 30 0.001 35.7 11.4 48 79-126 923-974 (1080)
17 3na7_A HP0958; flagellar bioge 69.3 51 0.0018 27.9 15.9 14 46-59 15-28 (256)
18 3cvf_A Homer-3, homer protein 67.4 14 0.00049 28.0 6.1 51 73-123 16-73 (79)
19 3swy_A Cyclic nucleotide-gated 65.0 11 0.00038 26.2 4.7 39 158-197 2-45 (46)
20 3bas_A Myosin heavy chain, str 64.0 42 0.0014 24.9 8.8 28 65-92 30-57 (89)
21 2e7s_A RAB guanine nucleotide 62.4 29 0.00098 28.7 7.5 98 73-176 35-132 (135)
22 1wt6_A Myotonin-protein kinase 62.3 20 0.00067 27.8 6.0 23 73-95 48-70 (81)
23 3oja_B Anopheles plasmodium-re 62.3 90 0.0031 28.1 12.1 31 170-200 525-555 (597)
24 2dfs_A Myosin-5A; myosin-V, in 61.5 1.2E+02 0.0043 31.2 13.5 86 80-175 956-1044(1080)
25 1m1j_A Fibrinogen alpha subuni 57.8 95 0.0032 30.5 11.3 78 138-225 105-194 (491)
26 2wt7_B Transcription factor MA 57.1 40 0.0014 26.0 7.1 82 20-122 5-86 (90)
27 3swf_A CGMP-gated cation chann 56.3 17 0.00057 27.6 4.7 42 158-200 4-50 (74)
28 2iak_A Bullous pemphigoid anti 55.5 79 0.0027 25.3 9.7 130 28-169 53-182 (224)
29 3cl3_D NF-kappa-B essential mo 54.4 26 0.00088 29.1 5.9 122 44-179 4-127 (130)
30 2e7s_A RAB guanine nucleotide 51.7 85 0.0029 25.9 8.6 81 46-126 36-117 (135)
31 3tnu_B Keratin, type II cytosk 49.1 90 0.0031 24.1 9.0 77 37-123 38-117 (129)
32 3m9b_A Proteasome-associated A 47.6 25 0.00084 31.6 5.1 29 1-29 1-29 (251)
33 3oja_A Leucine-rich immune mol 45.6 1.6E+02 0.0056 26.1 10.4 8 38-45 370-377 (487)
34 3cvf_A Homer-3, homer protein 42.4 39 0.0013 25.7 4.8 39 156-194 15-53 (79)
35 3tnu_A Keratin, type I cytoske 41.5 1.2E+02 0.0042 23.5 8.8 76 38-123 41-119 (131)
36 3cve_A Homer protein homolog 1 40.4 44 0.0015 25.0 4.8 39 156-194 9-47 (72)
37 3bas_A Myosin heavy chain, str 40.3 1.1E+02 0.0038 22.6 9.1 40 81-120 18-57 (89)
38 3o0z_A RHO-associated protein 40.1 1.7E+02 0.0059 24.8 12.1 30 84-113 6-35 (168)
39 3qh9_A Liprin-beta-2; coiled-c 38.3 89 0.0031 24.1 6.3 48 46-100 23-70 (81)
40 2xv5_A Lamin-A/C; structural p 38.3 1.2E+02 0.004 22.4 7.4 63 36-105 6-68 (74)
41 4h22_A Leucine-rich repeat fli 38.2 1.5E+02 0.0052 23.6 8.4 76 36-122 7-82 (103)
42 1m46_B IQ4, IQ4 motif from MYO 36.9 21 0.0007 22.6 2.1 20 170-190 6-25 (26)
43 4aj5_1 SKA3, spindle and kinet 36.7 1.6E+02 0.0055 23.5 8.9 81 79-159 15-96 (101)
44 3s4r_A Vimentin; alpha-helix, 36.0 75 0.0026 23.9 5.5 17 108-124 52-68 (93)
45 2bnx_A Diaphanous protein homo 36.0 14 0.00049 33.2 1.8 53 22-86 318-370 (386)
46 2z5i_A TM, general control pro 35.7 43 0.0015 23.2 3.8 26 69-94 3-29 (52)
47 3ol1_A Vimentin; structural ge 34.7 1.6E+02 0.0054 22.8 8.0 11 112-122 108-118 (119)
48 1t3j_A Mitofusin 1; coiled coi 34.2 98 0.0034 24.3 6.0 47 49-112 32-78 (96)
49 1yke_B RNA polymerase II holoe 29.9 40 0.0014 27.6 3.4 51 85-135 93-143 (151)
50 2ocy_A RAB guanine nucleotide 29.2 2.5E+02 0.0086 23.4 15.5 77 43-121 14-95 (154)
51 1t3j_A Mitofusin 1; coiled coi 29.1 29 0.001 27.3 2.3 30 237-266 54-89 (96)
52 3m0d_C TNF receptor-associated 29.0 1.5E+02 0.0052 20.8 6.9 33 28-60 6-38 (65)
53 2pnv_A Small conductance calci 28.4 35 0.0012 23.3 2.3 33 144-179 9-41 (43)
54 1sig_A Sigma70, RNA polymerase 27.4 2.9E+02 0.01 23.6 10.8 64 149-227 143-209 (339)
55 3ghg_A Fibrinogen alpha chain; 26.7 67 0.0023 32.0 4.8 45 186-239 50-94 (562)
56 2ocy_A RAB guanine nucleotide 26.4 2.8E+02 0.0096 23.1 10.6 49 47-95 49-97 (154)
57 3vp9_A General transcriptional 26.1 2.3E+02 0.0079 22.0 7.7 66 25-100 22-91 (92)
58 2xdj_A Uncharacterized protein 25.7 2.1E+02 0.0072 21.4 7.5 46 75-120 25-70 (83)
59 2nox_A Tryptophan 2,3-dioxygen 25.5 3.4E+02 0.012 24.1 8.8 120 47-211 64-184 (281)
60 1f5n_A Interferon-induced guan 25.4 4.6E+02 0.016 25.3 13.3 59 38-96 462-520 (592)
61 4etp_A Kinesin-like protein KA 25.3 1.5E+02 0.0051 27.1 6.6 47 75-121 15-61 (403)
62 2efr_A General control protein 25.1 2.9E+02 0.01 22.8 14.5 18 73-90 38-55 (155)
63 3nmd_A CGMP dependent protein 24.7 1E+02 0.0036 23.1 4.5 29 86-114 21-49 (72)
64 3bbp_D GRIP and coiled-coil do 24.2 60 0.002 24.6 3.1 38 147-198 29-66 (71)
65 1s1c_X RHO-associated, coiled- 23.4 2.3E+02 0.008 21.1 6.3 29 39-67 3-31 (71)
66 1uix_A RHO-associated kinase; 22.7 2.4E+02 0.0083 21.0 6.3 28 40-67 2-29 (71)
67 3lay_A Zinc resistance-associa 22.6 1.5E+02 0.0051 24.8 5.6 19 76-94 112-130 (175)
68 2eqb_B RAB guanine nucleotide 22.4 2.2E+02 0.0074 22.4 6.1 47 75-121 17-63 (97)
69 2j63_A AP-endonuclease; base e 22.0 19 0.00065 33.4 0.0 34 1-34 21-54 (467)
70 1m1j_C Fibrinogen gamma chain; 22.0 2.9E+02 0.0098 25.9 7.9 98 26-126 36-133 (409)
71 4h8s_A DCC-interacting protein 21.6 2.4E+02 0.0083 24.6 7.0 55 6-60 7-62 (407)
72 3a5t_A Transcription factor MA 20.9 10 0.00036 30.1 -1.7 85 20-125 15-99 (107)
73 1m1j_B Fibrinogen beta chain; 20.8 5.6E+02 0.019 24.5 11.3 94 98-198 85-191 (464)
74 3okq_A BUD site selection prot 20.6 38 0.0013 28.3 1.5 35 220-254 51-85 (141)
75 2gtl_M Hemoglobin linker chain 20.4 59 0.002 28.3 2.8 25 155-179 5-29 (217)
76 2zuo_A MVP, major vault protei 20.4 7.5E+02 0.026 25.9 14.3 40 186-225 794-841 (861)
77 2lic_A Vitellogenin; lipid tra 20.2 47 0.0016 22.1 1.6 15 6-20 10-24 (35)
No 1
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=95.28 E-value=0.053 Score=55.18 Aligned_cols=15 Identities=33% Similarity=0.368 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q 024148 40 FRKNVVSLAAELKEV 54 (272)
Q Consensus 40 fRrnvvsLaaELK~~ 54 (272)
++.++..+..+++++
T Consensus 869 l~~~L~~le~~l~el 883 (1184)
T 1i84_S 869 TKERQQKAEAELKEL 883 (1184)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333343333333333
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=92.99 E-value=0.32 Score=49.52 Aligned_cols=9 Identities=0% Similarity=0.246 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 024148 84 DEICKLQKT 92 (272)
Q Consensus 84 ~Ei~kLqK~ 92 (272)
.++..++..
T Consensus 927 ~~l~ele~e 935 (1184)
T 1i84_S 927 EILHEMEAR 935 (1184)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 3
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=90.57 E-value=5.2 Score=31.39 Aligned_cols=28 Identities=29% Similarity=0.276 Sum_probs=14.2
Q ss_pred HHHhhHHHHHHHhhchHHHHHHHHHHHh
Q 024148 67 KETLTRQEAEMKAKNMEDEICKLQKTLE 94 (272)
Q Consensus 67 kEt~tRk~aE~kak~ME~Ei~kLqK~Le 94 (272)
++...|++.|.+...+..|+..|+..|+
T Consensus 31 k~e~~r~ele~~~~~l~~Ek~~L~~qL~ 58 (129)
T 2fxo_A 31 KSEARRKELEEKMVSLLQEKNDLQLQVQ 58 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555554443
No 4
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=88.14 E-value=25 Score=40.73 Aligned_cols=119 Identities=17% Similarity=0.207 Sum_probs=62.4
Q ss_pred HHhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhhHhhhHHHHHHhh-------HhhHHhHHHHHHHH-------
Q 024148 77 MKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATA-------DASAASAQSAQLQC------- 142 (272)
Q Consensus 77 ~kak~ME~Ei~kLqK~Leek~eQL~as~~stEkyl~eLD~lRSQLs~TqATA-------eaSAaSAqsaqlqC------- 142 (272)
.|...-.+.|.+||+.|.++..+|......|++.+.++..=...-...++.+ +.-++-++.-+-.|
T Consensus 1927 ~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~~~~~~~~~~~~ei~~~k~~~e~dL~~A 2006 (3245)
T 3vkg_A 1927 KKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKA 2006 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4555556778888888888888888888888888776654332222222211 11111111111122
Q ss_pred ----------HHHHhhhhhhhchhhhhhhHhhhhHHHHHhHHHHHhhhhhhHHHHHHHHHHHH
Q 024148 143 ----------LALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIE 195 (272)
Q Consensus 143 ----------l~L~keL~eK~~sLkEhE~rV~~lgeQLd~LqK~LqaRE~SQkQLKDeVlriE 195 (272)
-.+-++|......|.+-+..+..|.+.|+.|+..++..-.-...|++++-..+
T Consensus 2007 ~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~ 2069 (3245)
T 3vkg_A 2007 EPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVK 2069 (3245)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12223444455556666666666666666666665544333334444443333
No 5
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=86.49 E-value=14 Score=31.32 Aligned_cols=71 Identities=6% Similarity=0.140 Sum_probs=44.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHhhhhhhhh
Q 024148 31 KDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQ 101 (272)
Q Consensus 31 kDL~EKK~sfRrnvvsLaaELK~~R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Leek~eQL~ 101 (272)
.+++-+-..++.-.-.|-+||.++...++.-...+..=.......+...+..|.+|..+...+..-..+|-
T Consensus 14 Q~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~ 84 (256)
T 3na7_A 14 SHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMS 84 (256)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555566677777777776666666555555566666667777777777766666555553
No 6
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=86.36 E-value=49 Score=38.43 Aligned_cols=31 Identities=13% Similarity=0.255 Sum_probs=17.3
Q ss_pred hhhhhhhhHHHHHHHhhhHhhhHHHHHHhhH
Q 024148 99 RLQASACTAEKYLMQLDGLRSQLAATKATAD 129 (272)
Q Consensus 99 QL~as~~stEkyl~eLD~lRSQLs~TqATAe 129 (272)
.|.......+..-.||..++-+|...++-|+
T Consensus 1928 KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~ 1958 (3245)
T 3vkg_A 1928 KLRDTEAQVKDLQVSLAQKNRELDVKNEQAN 1958 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555667777766665554443
No 7
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=85.16 E-value=21 Score=32.18 Aligned_cols=45 Identities=29% Similarity=0.285 Sum_probs=29.5
Q ss_pred hhhHHHHHhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 024148 164 TRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVN 208 (272)
Q Consensus 164 ~~lgeQLd~LqK~LqaRE~SQkQLKDeVlriE~dIm~Avakag~~ 208 (272)
.++..+.+.+++.++...--..++++|+-.+..+|.+-..+...|
T Consensus 540 ~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~ 584 (597)
T 3oja_B 540 EDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRN 584 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred hhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 344555566666666666666788888888888887777665443
No 8
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=84.27 E-value=0.31 Score=33.22 Aligned_cols=21 Identities=43% Similarity=0.586 Sum_probs=18.3
Q ss_pred HhhhhhhccchhHhhhhhhhh
Q 024148 226 ERINKLLVVKDEEIHKLKDEI 246 (272)
Q Consensus 226 e~inkll~~kD~eIakLrdei 246 (272)
+++-+-+..||+|||+||.|=
T Consensus 10 ekLhk~ie~KdeeIa~Lk~eN 30 (37)
T 1t6f_A 10 EKLHKEIEQKDNEIARLKKEN 30 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 677888999999999999863
No 9
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=78.40 E-value=32 Score=29.59 Aligned_cols=120 Identities=18% Similarity=0.181 Sum_probs=55.5
Q ss_pred chHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhhHhhhHHHHHHhhHhhHH----hHHHHHHHHHHHHhhhh------
Q 024148 81 NMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAA----SAQSAQLQCLALVKELD------ 150 (272)
Q Consensus 81 ~ME~Ei~kLqK~Leek~eQL~as~~stEkyl~eLD~lRSQLs~TqATAeaSAa----SAqsaqlqCl~L~keL~------ 150 (272)
-||.||..+.|...+-..++.--..-.+.|-..++...++...+...-+.-.. .-...+.+|..|=-.-|
T Consensus 46 ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~ 125 (189)
T 2v71_A 46 ELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAK 125 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 46777777776655544443333333344444444444443332222222111 11222333333222111
Q ss_pred -hhhchhhhhhhHhhhhHHHHHhHHHHHhhhhhhHH---HHHHHH--HHHHHHHHH
Q 024148 151 -EKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQK---QLKDEV--FRIEQDIMQ 200 (272)
Q Consensus 151 -eK~~sLkEhE~rV~~lgeQLd~LqK~LqaRE~SQk---QLKDeV--lriE~dIm~ 200 (272)
-..+||..-|.+.|.+=|..-.|+-+|..|+--+- -||||+ +++|-+|++
T Consensus 126 R~~~~SleD~e~kln~aiEr~alLE~El~EKe~l~~~~QRLkdE~rDLk~El~v~~ 181 (189)
T 2v71_A 126 RATIMSLEDFEQRLNQAIERNAFLESELDEKESLLVSVQRLKDEARDLRQELAVRE 181 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------------------
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 15678888999999999999999999987763322 467773 566665554
No 10
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=77.00 E-value=24 Score=27.52 Aligned_cols=92 Identities=17% Similarity=0.241 Sum_probs=55.7
Q ss_pred hhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhhHhhhHHHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhchhhh
Q 024148 79 AKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKE 158 (272)
Q Consensus 79 ak~ME~Ei~kLqK~Leek~eQL~as~~stEkyl~eLD~lRSQLs~TqATAeaSAaSAqsaqlqCl~L~keL~eK~~sLkE 158 (272)
.+.|++++.+|...|+.-.....---..-.+++.|..+|..||.+.+.+..-.-.-...-..+..-|-+.|++-..-|-+
T Consensus 15 ~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rlee 94 (129)
T 2fxo_A 15 MASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLED 94 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578888888777764433333333444557788888888888777663322222233344455566677777777777
Q ss_pred hhhHhhhhHHHH
Q 024148 159 HEDRVTRLGQQL 170 (272)
Q Consensus 159 hE~rV~~lgeQL 170 (272)
-|++...|...-
T Consensus 95 eee~~~~L~~~k 106 (129)
T 2fxo_A 95 EEEMNAELTAKK 106 (129)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777766554433
No 11
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=76.86 E-value=14 Score=36.77 Aligned_cols=44 Identities=20% Similarity=0.185 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcC------------CchhHHHHhhhccCcchHH
Q 024148 183 SQKQLKDEVFRIEQDIMQTIAKAGV------------NKDCELRKLLDEVSPKNFE 226 (272)
Q Consensus 183 SQkQLKDeVlriE~dIm~Avakag~------------~~d~El~kil~evspkn~e 226 (272)
.-+.++-++.|+|.||--.+..-.. .--.++.|-|..|..+|..
T Consensus 139 nLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~QKQLeQv~a~dL~ 194 (562)
T 3ghg_A 139 NVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQKQLEQVIAKDLL 194 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccchheeecchHHHHHHHHHHHHHhhcccC
Confidence 3446777899999999776654321 1224688888888777753
No 12
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=75.80 E-value=9.9 Score=28.52 Aligned_cols=51 Identities=24% Similarity=0.450 Sum_probs=35.8
Q ss_pred HHHHHHhhchHHHHHHHHHHHhhhhh---hhhh----hhhhHHHHHHHhhhHhhhHHH
Q 024148 73 QEAEMKAKNMEDEICKLQKTLEERNG---RLQA----SACTAEKYLMQLDGLRSQLAA 123 (272)
Q Consensus 73 k~aE~kak~ME~Ei~kLqK~Leek~e---QL~a----s~~stEkyl~eLD~lRSQLs~ 123 (272)
|.+|.+-..||+-|..|+..|++--. ++++ ....-.-=+.||-+||-.|+-
T Consensus 10 q~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~Lak 67 (72)
T 3cve_A 10 QEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLAK 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 78899999999999999999987542 2322 222223345788888888764
No 13
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=75.52 E-value=18 Score=34.49 Aligned_cols=48 Identities=15% Similarity=0.229 Sum_probs=26.4
Q ss_pred hhhchhhhhhhHhhhhHHHHHhHHHHHhhhhhhH-----------HHHHHHHHHHHHHH
Q 024148 151 EKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQ-----------KQLKDEVFRIEQDI 198 (272)
Q Consensus 151 eK~~sLkEhE~rV~~lgeQLd~LqK~LqaRE~SQ-----------kQLKDeVlriE~dI 198 (272)
.+-..-...+..++.+.+.|..-+.||+.+=-.| +.++-++.|||.||
T Consensus 99 ~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 99 GDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555555555554444444433222 25666788999999
No 14
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=72.78 E-value=33 Score=27.04 Aligned_cols=75 Identities=21% Similarity=0.210 Sum_probs=47.6
Q ss_pred HHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHhhhhhhhhhhh-hhHHHHHHHhhhHhhhHHH
Q 024148 49 AELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASA-CTAEKYLMQLDGLRSQLAA 123 (272)
Q Consensus 49 aELK~~R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Leek~eQL~as~-~stEkyl~eLD~lRSQLs~ 123 (272)
.+++++...+..--.-+..|-.-|..||...+.+|.|+-.|--.|=+.--..-|.+ -....+-...+.|+.||.-
T Consensus 19 ~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~~qL~d 94 (97)
T 2eqb_B 19 RELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444444444556678888899999999999999999777644333333322 2333455677777777754
No 15
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=71.98 E-value=6.6 Score=29.63 Aligned_cols=31 Identities=26% Similarity=0.328 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhhHhhh
Q 024148 83 EDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQ 120 (272)
Q Consensus 83 E~Ei~kLqK~Leek~eQL~as~~stEkyl~eLD~lRSQ 120 (272)
++-|+.|.++|.+|+..++ .+..+||.+||=
T Consensus 39 d~~I~eLEk~L~ekd~eI~-------~LqseLDKfrSV 69 (72)
T 3nmd_A 39 DALIDELELELDQKDELIQ-------MLQNELDKYRSV 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhcc
Confidence 5568899999999998886 566778887773
No 16
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=71.94 E-value=30 Score=35.72 Aligned_cols=48 Identities=21% Similarity=0.335 Sum_probs=12.7
Q ss_pred hhchHHHHHHHHHHHhhh---hhhhhhhhhh-HHHHHHHhhhHhhhHHHHHH
Q 024148 79 AKNMEDEICKLQKTLEER---NGRLQASACT-AEKYLMQLDGLRSQLAATKA 126 (272)
Q Consensus 79 ak~ME~Ei~kLqK~Leek---~eQL~as~~s-tEkyl~eLD~lRSQLs~TqA 126 (272)
-..||..|..|+.+|++. +..|+..... .++...|+..|+.++...+.
T Consensus 923 ~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~ 974 (1080)
T 2dfs_A 923 HIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRM 974 (1080)
T ss_dssp ----------------------------CHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 356888888888888764 4444444322 23456777777666655444
No 17
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=69.35 E-value=51 Score=27.85 Aligned_cols=14 Identities=14% Similarity=0.299 Sum_probs=6.4
Q ss_pred HHHHHHHHHHhhhh
Q 024148 46 SLAAELKEVRTRLA 59 (272)
Q Consensus 46 sLaaELK~~R~rLa 59 (272)
.+..++...+.++.
T Consensus 15 ~lD~~i~~l~~~~~ 28 (256)
T 3na7_A 15 HLDKEIDSLEPLIR 28 (256)
T ss_dssp HHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34445554444443
No 18
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=67.41 E-value=14 Score=28.04 Aligned_cols=51 Identities=27% Similarity=0.423 Sum_probs=36.2
Q ss_pred HHHHHHhhchHHHHHHHHHHHhhhh---hhhhhhhh----hHHHHHHHhhhHhhhHHH
Q 024148 73 QEAEMKAKNMEDEICKLQKTLEERN---GRLQASAC----TAEKYLMQLDGLRSQLAA 123 (272)
Q Consensus 73 k~aE~kak~ME~Ei~kLqK~Leek~---eQL~as~~----stEkyl~eLD~lRSQLs~ 123 (272)
|.+|.+-..||+-|..|+..|++-- +++++-.. .-.-=+.||-+||-.|+-
T Consensus 16 q~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLak 73 (79)
T 3cvf_A 16 QDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLAR 73 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 7889999999999999999998754 23333222 222245788888888874
No 19
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=64.99 E-value=11 Score=26.19 Aligned_cols=39 Identities=33% Similarity=0.593 Sum_probs=32.8
Q ss_pred hhhhHhhhhHHHHHhHHHHHhhh-----hhhHHHHHHHHHHHHHH
Q 024148 158 EHEDRVTRLGQQLDNLQKDLQAR-----ESSQKQLKDEVFRIEQD 197 (272)
Q Consensus 158 EhE~rV~~lgeQLd~LqK~LqaR-----E~SQkQLKDeVlriE~d 197 (272)
+=|++|++|.--||.||--+ || ++||.-||.-|-.+|.-
T Consensus 2 dlEekv~~Le~~ld~LqTr~-ArLlae~~ssq~KlKqRit~lE~~ 45 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRF-ARLLAEYNATQMKMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34889999999999999665 44 89999999999988863
No 20
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=63.99 E-value=42 Score=24.91 Aligned_cols=28 Identities=14% Similarity=0.160 Sum_probs=18.4
Q ss_pred HHHHHhhHHHHHHHhhchHHHHHHHHHH
Q 024148 65 FVKETLTRQEAEMKAKNMEDEICKLQKT 92 (272)
Q Consensus 65 ~akEt~tRk~aE~kak~ME~Ei~kLqK~ 92 (272)
+.++...|++-|.+...+..|...|+-.
T Consensus 30 l~k~e~~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 30 LAKTERIKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666777777777777777666644
No 21
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=62.39 E-value=29 Score=28.70 Aligned_cols=98 Identities=19% Similarity=0.231 Sum_probs=39.9
Q ss_pred HHHHHHhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhhHhhhHHHHHHhhHhhHHhHHHHHHHHHHHHhhhhhh
Q 024148 73 QEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEK 152 (272)
Q Consensus 73 k~aE~kak~ME~Ei~kLqK~Leek~eQL~as~~stEkyl~eLD~lRSQLs~TqATAeaSAaSAqsaqlqCl~L~keL~eK 152 (272)
+.+.+..+..+.|+.+|+..|.+-..+-...-+.-.+.-.||++|=..| |.+|--=.++| ...+-.+-+....=
T Consensus 35 ~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasL-FeEAN~MVa~a-----r~~~~~~e~r~~~L 108 (135)
T 2e7s_A 35 NTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL-FDEANNLVADA-----RMEKYAIEILNKRL 108 (135)
T ss_dssp HHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHH-HHHHHHHHHHT-----THHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 3344445667777777777776665544444444444557777775555 33332222222 12222222221111
Q ss_pred hchhhhhhhHhhhhHHHHHhHHHH
Q 024148 153 NSSLKEHEDRVTRLGQQLDNLQKD 176 (272)
Q Consensus 153 ~~sLkEhE~rV~~lgeQLd~LqK~ 176 (272)
..-|++-+.++..+.+||..|+.-
T Consensus 109 ~~ql~e~e~ll~~lq~QL~~LK~v 132 (135)
T 2e7s_A 109 TEQLREKDMLLDTLTLQLKNLKKV 132 (135)
T ss_dssp HHTTTHHHHCC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223444555666666777666543
No 22
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=62.33 E-value=20 Score=27.75 Aligned_cols=23 Identities=30% Similarity=0.550 Sum_probs=21.2
Q ss_pred HHHHHHhhchHHHHHHHHHHHhh
Q 024148 73 QEAEMKAKNMEDEICKLQKTLEE 95 (272)
Q Consensus 73 k~aE~kak~ME~Ei~kLqK~Lee 95 (272)
++||.+-+.++.||.+|.+.+++
T Consensus 48 ~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 48 REAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999988
No 23
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=62.27 E-value=90 Score=28.12 Aligned_cols=31 Identities=13% Similarity=0.297 Sum_probs=14.6
Q ss_pred HHhHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 024148 170 LDNLQKDLQARESSQKQLKDEVFRIEQDIMQ 200 (272)
Q Consensus 170 Ld~LqK~LqaRE~SQkQLKDeVlriE~dIm~ 200 (272)
+..+++..+++.--.++++.|+.++|+.|-.
T Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~ 555 (597)
T 3oja_B 525 TQARRTEADAKQKETEDLEQENIALEKQLDN 555 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhcchhhHHhhhHHHHHHHhh
Confidence 3333333333333334555666666665543
No 24
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=61.48 E-value=1.2e+02 Score=31.23 Aligned_cols=86 Identities=19% Similarity=0.165 Sum_probs=46.1
Q ss_pred hchHHHHHHHHHHHhhhhh---hhhhhhhhHHHHHHHhhhHhhhHHHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhchh
Q 024148 80 KNMEDEICKLQKTLEERNG---RLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSL 156 (272)
Q Consensus 80 k~ME~Ei~kLqK~Leek~e---QL~as~~stEkyl~eLD~lRSQLs~TqATAeaSAaSAqsaqlqCl~L~keL~eK~~sL 156 (272)
..++.|+.+|++.+++... ++.+........-.|++.++.++.-+..--+ +. +-.|-.+...|.+|.++|
T Consensus 956 ~~~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~--~l-----ee~~~~~~~~L~~kv~~L 1028 (1080)
T 2dfs_A 956 ITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKK--TI-----EEWADKYKHETEQLVSEL 1028 (1080)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH-----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH-----HHHHHHHHHHHHHHHHHH
Confidence 4567888888776655433 2222222233345777777777765443222 22 223333345667777777
Q ss_pred hhhhhHhhhhHHHHHhHHH
Q 024148 157 KEHEDRVTRLGQQLDNLQK 175 (272)
Q Consensus 157 kEhE~rV~~lgeQLd~LqK 175 (272)
.+. ...|..|+|.|..
T Consensus 1029 ~~e---~~~L~qq~~~l~~ 1044 (1080)
T 2dfs_A 1029 KEQ---NTLLKTEKEELNR 1044 (1080)
T ss_dssp HHH---HHHHHHHHHHHHH
T ss_pred HHH---HHHHHHHHHHHHH
Confidence 653 3455566666653
No 25
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=57.76 E-value=95 Score=30.50 Aligned_cols=78 Identities=23% Similarity=0.233 Sum_probs=49.6
Q ss_pred HHHHHHHHHhhhhhhhchhhhhhhHhhhhHHHHHhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhc-----------
Q 024148 138 AQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAG----------- 206 (272)
Q Consensus 138 aqlqCl~L~keL~eK~~sLkEhE~rV~~lgeQLd~LqK~LqaRE~SQkQLKDeVlriE~dIm~Avakag----------- 206 (272)
-.--|..++.+|..+..-|++ +|+.--.+|..||..|+ .++-++.|+|.||.-.+..-.
T Consensus 105 ndn~~~e~S~eLe~ri~yIK~---kVd~qi~~IrvLq~~l~-------~q~skIQRLE~dI~~q~~~Cr~pC~r~~~y~V 174 (491)
T 1m1j_A 105 LDENYGHVSTELRRRIVTLKQ---RVATQVNRIKALQNSIQ-------EQVVEMKRLEVDIDIKIRACKGSCARSFDYQV 174 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHTTTTTBSSCCCCCC
T ss_pred chhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhcchhhhhHHhhh
Confidence 344455566666666666654 33332255566665554 567789999999988875432
Q ss_pred -CCchhHHHHhhhccCcchH
Q 024148 207 -VNKDCELRKLLDEVSPKNF 225 (272)
Q Consensus 207 -~~~d~El~kil~evspkn~ 225 (272)
.....++.|.|.-|..+|.
T Consensus 175 D~~~Ye~~QKqLeQv~a~dL 194 (491)
T 1m1j_A 175 DKEGYDNIQKHLTQASSIDM 194 (491)
T ss_dssp CTTTTHHHHHHHHHHTTCCC
T ss_pred cHHHHHHHHHHHHHhhcccc
Confidence 3445678899988876654
No 26
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=57.06 E-value=40 Score=26.05 Aligned_cols=82 Identities=16% Similarity=0.311 Sum_probs=53.2
Q ss_pred CCCccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHhhhhhh
Q 024148 20 SVPAREIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGR 99 (272)
Q Consensus 20 s~~~~elDPLLkDL~EKK~sfRrnvvsLaaELK~~R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Leek~eQ 99 (272)
+.|++|+|-+|+.|+..- .+.||+-|-+|- -.-+|+=.-+|+..+. ..+|.|++.|+..++.--.+
T Consensus 5 ~msVreLN~~L~gls~ee----------v~~lKq~RRtlK--NRgyAq~CR~Kr~~q~--~~LE~e~~~L~~e~~~L~~e 70 (90)
T 2wt7_B 5 SMSVRELNRHLRGFTKDE----------VIRLKQKRRTLK--NRGYAQSCRYKRVQQK--HHLENEKTQLIQQVEQLKQE 70 (90)
T ss_dssp HSCHHHHHTTCTTCCHHH----------HHHHHHHHHHHH--HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHcCCCHHH----------HHHHHHHHHhhh--hhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 457889999988776543 357888888774 3556666666666444 67888888887665543333
Q ss_pred hhhhhhhHHHHHHHhhhHhhhHH
Q 024148 100 LQASACTAEKYLMQLDGLRSQLA 122 (272)
Q Consensus 100 L~as~~stEkyl~eLD~lRSQLs 122 (272)
+ ..+..|+|.++..+.
T Consensus 71 ~-------~~~~~e~d~~k~k~~ 86 (90)
T 2wt7_B 71 V-------SRLARERDAYKVKSE 86 (90)
T ss_dssp H-------HHHHHHHHHHHHHHH
T ss_pred H-------HHHHHHHHHHHHHHH
Confidence 3 334466666665543
No 27
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=56.29 E-value=17 Score=27.63 Aligned_cols=42 Identities=36% Similarity=0.510 Sum_probs=35.2
Q ss_pred hhhhHhhhhHHHHHhHHHHHhhh-----hhhHHHHHHHHHHHHHHHHH
Q 024148 158 EHEDRVTRLGQQLDNLQKDLQAR-----ESSQKQLKDEVFRIEQDIMQ 200 (272)
Q Consensus 158 EhE~rV~~lgeQLd~LqK~LqaR-----E~SQkQLKDeVlriE~dIm~ 200 (272)
.-|.+|++|.--||.||--+ || ++||.-||.-|-++|.-+-.
T Consensus 4 dlEEKv~~LE~sld~LQTrf-ARLLaEy~ssQ~KLKqRit~LE~~~~~ 50 (74)
T 3swf_A 4 GLEEKVTRMESSVDLLQTRF-ARILAEYESMQQKLKQRLTKVEKFLKP 50 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35789999999999999665 44 89999999999999986544
No 28
>2iak_A Bullous pemphigoid antigen 1, isoform 5; triple helical bundle, spectrin repeat, cell adhesion; 3.00A {Mus musculus}
Probab=55.52 E-value=79 Score=25.34 Aligned_cols=130 Identities=14% Similarity=0.159 Sum_probs=72.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHhhhhhhhhhhhhhH
Q 024148 28 PLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTA 107 (272)
Q Consensus 28 PLLkDL~EKK~sfRrnvvsLaaELK~~R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Leek~eQL~as~~st 107 (272)
|-+..|-.|=..|.+.|.....-++.+.. .+..|.. . -......+...++.--..|.....+|-..|. ..
T Consensus 53 ~~v~~ll~kh~~~e~ei~~~~~~v~~~~~----~~~~~~~-~-~~~~i~~~~~~l~~~~~~L~~~~~~R~~~Le----~l 122 (224)
T 2iak_A 53 PSVESHLENHKNVHRAIEEFESSLKEAKI----SEIQMTA-P-LKLSYTDKLHRLESQYAKLLNTSRNQERHLD----TL 122 (224)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHH----HGGGCCT-T-HHHHHHHHHHHHHHHHHHTTTHHHHHHHHHH----HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhccc-c-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH
Confidence 34555666677777777776666555432 2222321 1 1233455666777777778888888888887 77
Q ss_pred HHHHHHhhhHhhhHHHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhchhhhhhhHhhhhHHH
Q 024148 108 EKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQ 169 (272)
Q Consensus 108 Ekyl~eLD~lRSQLs~TqATAeaSAaSAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~lgeQ 169 (272)
.+|...++++-+=+.-....+.. ..-..+ -..+..|.+....=.+.|..|+.+|+.|-+.
T Consensus 123 ~~F~~~~~~~~~Wi~eke~~~~s-~d~g~~-l~~v~~L~~kh~~l~~el~~~~~~v~~v~~~ 182 (224)
T 2iak_A 123 HNFVTRATNELIWLNEKEESEVA-YDWSER-NSSVARKKSYHAELMRELEQKEESIKAVQEI 182 (224)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCC-C----------------CSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-cccCCC-chhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 88999998887777666655322 111111 1235566666555666677777777666433
No 29
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=54.38 E-value=26 Score=29.14 Aligned_cols=122 Identities=23% Similarity=0.276 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhhHhhhHHH
Q 024148 44 VVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAA 123 (272)
Q Consensus 44 vvsLaaELK~~R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Leek~eQL~as~~stEkyl~eLD~lRSQLs~ 123 (272)
|.||-.||.++-.+|-.-++- ++.-+.|.+..|.....+.-.|++---|+ .+.-.+..-.+.-+++.|--
T Consensus 4 vtSL~~ELqEsqskL~~Ae~~-------k~~Leek~~~~e~~~~~~~~Elee~kqq~---~~~~d~L~lQ~esmeaalkm 73 (130)
T 3cl3_D 4 ASGSLGELQESQSRLEAATKE-------CQALEGRARAASEQARQLESEREALQQQH---SVQVDQLRMQGQSVEAALRM 73 (130)
T ss_dssp ------------------------------------------------------CTT---THHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 778999999999988644332 22233344444444433333333311222 22334455566666666666
Q ss_pred HHHhhHhhHHhHHHHHHHHHH--HHhhhhhhhchhhhhhhHhhhhHHHHHhHHHHHhh
Q 024148 124 TKATADASAASAQSAQLQCLA--LVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQA 179 (272)
Q Consensus 124 TqATAeaSAaSAqsaqlqCl~--L~keL~eK~~sLkEhE~rV~~lgeQLd~LqK~Lqa 179 (272)
-++.+.. .=-..||||--+ |..+.|+...+.--.-.|+..+ ||+.|-..|+.
T Consensus 74 Er~~~~e--EKrkLAqLQ~AY~~LfqeYd~~lK~~~~~~e~~~~~--ql~dL~qqLq~ 127 (130)
T 3cl3_D 74 ERQAASE--EKRKLAQLQVAYHQLFQEYDNHIKSSVVGSERKRGM--QLEDLKQQLQQ 127 (130)
T ss_dssp HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------------
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc--hHHHHHHHHHH
Confidence 6655432 344678887554 5666666444443334455444 77766655543
No 30
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=51.71 E-value=85 Score=25.89 Aligned_cols=81 Identities=22% Similarity=0.228 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHhhhhhhhhhhh-hhHHHHHHHhhhHhhhHHHH
Q 024148 46 SLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASA-CTAEKYLMQLDGLRSQLAAT 124 (272)
Q Consensus 46 sLaaELK~~R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Leek~eQL~as~-~stEkyl~eLD~lRSQLs~T 124 (272)
.|-.+|+++-..+..--.-+..|..-|..||...+.+|-|+..|--.|=+.--..-|.+ -....+-...+.|+.||.-+
T Consensus 36 ~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~ 115 (135)
T 2e7s_A 36 TLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLREK 115 (135)
T ss_dssp HHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444555555666677888899999999999999999998776643322222222 22233445555566655544
Q ss_pred HH
Q 024148 125 KA 126 (272)
Q Consensus 125 qA 126 (272)
.+
T Consensus 116 e~ 117 (135)
T 2e7s_A 116 DM 117 (135)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 31
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=49.09 E-value=90 Score=24.12 Aligned_cols=77 Identities=18% Similarity=0.223 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHH---HH
Q 024148 37 KQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYL---MQ 113 (272)
Q Consensus 37 K~sfRrnvvsLaaELK~~R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Leek~eQL~as~~stEkyl---~e 113 (272)
--.+||+|-+|-+||-..++.-++-|..++ |++.| .+.++..++..+.+...+|.-.-...+..+ .+
T Consensus 38 i~elrr~iq~L~~el~~l~~~~~~LE~~l~-e~e~~---------~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~ 107 (129)
T 3tnu_B 38 ISEMNRMIQRLRAEIDNVKKQCANLQNAIA-DAEQR---------GELALKDARNKLAELEEALQKAKQDMARLLREYQE 107 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHH---------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 445799999999999999988777776654 33332 233444444444444444443333334433 34
Q ss_pred hhhHhhhHHH
Q 024148 114 LDGLRSQLAA 123 (272)
Q Consensus 114 LD~lRSQLs~ 123 (272)
|=+++..|..
T Consensus 108 LlnvKl~Ld~ 117 (129)
T 3tnu_B 108 LMNTKLALDV 117 (129)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4455555543
No 32
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=47.61 E-value=25 Score=31.64 Aligned_cols=29 Identities=28% Similarity=0.295 Sum_probs=0.0
Q ss_pred CCCCCCCCccccCCCCCCCCCCccccchh
Q 024148 1 MSASGHRSSMSTSSSSSSSSVPAREIDPL 29 (272)
Q Consensus 1 ~~~~~~~~~~~~~~~~~sss~~~~elDPL 29 (272)
|.+++-.-...+..+.|+++...+++..|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (251)
T 3m9b_A 1 MGESERSEAFGIPRDSPLSSGDAAELEQL 29 (251)
T ss_dssp -----------------------------
T ss_pred CCCccchhhccCCccCCCcccchHHHHHH
Confidence 33333333333444455555555555553
No 33
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=45.55 E-value=1.6e+02 Score=26.07 Aligned_cols=8 Identities=13% Similarity=0.360 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 024148 38 QSFRKNVV 45 (272)
Q Consensus 38 ~sfRrnvv 45 (272)
..|..-|.
T Consensus 370 ~~le~~~~ 377 (487)
T 3oja_A 370 KALDEQVS 377 (487)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 34
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=42.37 E-value=39 Score=25.65 Aligned_cols=39 Identities=23% Similarity=0.405 Sum_probs=32.3
Q ss_pred hhhhhhHhhhhHHHHHhHHHHHhhhhhhHHHHHHHHHHH
Q 024148 156 LKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRI 194 (272)
Q Consensus 156 LkEhE~rV~~lgeQLd~LqK~LqaRE~SQkQLKDeVlri 194 (272)
|.+=|.+=..|.+++-.|+..|+.....|.+++-||.++
T Consensus 15 lq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l 53 (79)
T 3cvf_A 15 VQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRA 53 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777788999999999999999999999998764
No 35
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=41.49 E-value=1.2e+02 Score=23.48 Aligned_cols=76 Identities=21% Similarity=0.272 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHH---Hh
Q 024148 38 QSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLM---QL 114 (272)
Q Consensus 38 ~sfRrnvvsLaaELK~~R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Leek~eQL~as~~stEkyl~---eL 114 (272)
.-+||+|-+|-+||-..++.-++-|..++ |++.| .+.++..++..+.+...+|.-.-...+..+. +|
T Consensus 41 ~elrr~iq~L~~el~~l~~~~~sLE~~l~-e~e~~---------~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~L 110 (131)
T 3tnu_A 41 SELRRTMQNLEIELQSQLSMKASLENSLE-ETKGR---------YCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKIL 110 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHH-HHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999888887776665543 33322 2444555555555555555444444444443 34
Q ss_pred hhHhhhHHH
Q 024148 115 DGLRSQLAA 123 (272)
Q Consensus 115 D~lRSQLs~ 123 (272)
=+++..|..
T Consensus 111 l~vKl~Ld~ 119 (131)
T 3tnu_A 111 LDVKTRLEQ 119 (131)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 455555543
No 36
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=40.37 E-value=44 Score=24.97 Aligned_cols=39 Identities=26% Similarity=0.382 Sum_probs=31.7
Q ss_pred hhhhhhHhhhhHHHHHhHHHHHhhhhhhHHHHHHHHHHH
Q 024148 156 LKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRI 194 (272)
Q Consensus 156 LkEhE~rV~~lgeQLd~LqK~LqaRE~SQkQLKDeVlri 194 (272)
|.+=|.+=..|.+++-.|+.+|+.....|.+++-||.++
T Consensus 9 Lq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~ 47 (72)
T 3cve_A 9 LQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTL 47 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566667788899999999999988999999888764
No 37
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=40.34 E-value=1.1e+02 Score=22.62 Aligned_cols=40 Identities=13% Similarity=0.071 Sum_probs=22.3
Q ss_pred chHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhhHhhh
Q 024148 81 NMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQ 120 (272)
Q Consensus 81 ~ME~Ei~kLqK~Leek~eQL~as~~stEkyl~eLD~lRSQ 120 (272)
.|++|+.+|...|+.-.....---....+++.|-.+|-.|
T Consensus 18 ~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 18 EQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888887777644433333333344455555555544
No 38
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=40.14 E-value=1.7e+02 Score=24.82 Aligned_cols=30 Identities=33% Similarity=0.412 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhHHHHHHH
Q 024148 84 DEICKLQKTLEERNGRLQASACTAEKYLMQ 113 (272)
Q Consensus 84 ~Ei~kLqK~Leek~eQL~as~~stEkyl~e 113 (272)
+=|..|+|-|+|-|+.|++-.-++.+.-+-
T Consensus 6 eKi~~LekQL~E~n~kLk~EsE~~~rlkK~ 35 (168)
T 3o0z_A 6 EKLSQLQKQLEEANDLLRTESDTAVRLRKS 35 (168)
T ss_dssp ----CTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 334556666666666666666666554443
No 39
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=38.31 E-value=89 Score=24.10 Aligned_cols=48 Identities=23% Similarity=0.409 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHhhhhhhh
Q 024148 46 SLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRL 100 (272)
Q Consensus 46 sLaaELK~~R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Leek~eQL 100 (272)
-|--|+++.|-|+..-|-- |---|.|.|+--+||+-||+.|+.++..+
T Consensus 23 ~L~qEi~~Lr~kv~elEnE-------rlQyEkKLKsTK~El~~Lq~qLe~kd~ei 70 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENE-------RNQYEWKLKATKAEVAQLQEQVALKDAEI 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhhHHHHHHHHHHHHhhHHHH
Confidence 5788999999998765532 34468888888899999999999998644
No 40
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=38.28 E-value=1.2e+02 Score=22.36 Aligned_cols=63 Identities=25% Similarity=0.365 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHhhhhhhhhhhhh
Q 024148 36 KKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASAC 105 (272)
Q Consensus 36 KK~sfRrnvvsLaaELK~~R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Leek~eQL~as~~ 105 (272)
-.+.++.-+..|-+||.++|.-++.|-+-+ ++-.+=|. .+|.||.--.|.|+.....+..+.+
T Consensus 6 e~~~~~~~i~~lE~eL~~~r~e~~~ql~EY-q~LlniKl------~Le~EIatYRkLLEGEe~Rl~~~~~ 68 (74)
T 2xv5_A 6 ERDTSRRLLAEKEREMAEMRARMQQQLDEY-QELLDIKL------ALDMEIHAYRKLLEGEEERLRLSPS 68 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH------HHHHHHHHHHHHTTC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH------HHHHHHHHHHHHHhcCccccCCCCC
Confidence 346778888889999999999999886666 55555443 4899999999999877666654433
No 41
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=38.24 E-value=1.5e+02 Score=23.61 Aligned_cols=76 Identities=17% Similarity=0.291 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhh
Q 024148 36 KKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLD 115 (272)
Q Consensus 36 KK~sfRrnvvsLaaELK~~R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Leek~eQL~as~~stEkyl~eLD 115 (272)
=...||+..|+-|. |-.=++-|.=|=..+ --+.-.||+.+..+++.+.|+.-.+...--.....-.+++
T Consensus 7 vEEKyrKAMVsnAQ-LDNEKsal~YqVdlL----------KD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~ 75 (103)
T 4h22_A 7 VEEKYKKAMVSNAQ-LDNEKTNFMYQVDTL----------KDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFA 75 (103)
T ss_dssp -CCTHHHHHHHHHH-HHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-hccHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34459999998763 444444444333222 2344568899999999999998888777777666667777
Q ss_pred hHhhhHH
Q 024148 116 GLRSQLA 122 (272)
Q Consensus 116 ~lRSQLs 122 (272)
.||.||.
T Consensus 76 ~lk~~L~ 82 (103)
T 4h22_A 76 EVKEALK 82 (103)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777775
No 42
>1m46_B IQ4, IQ4 motif from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle protein; 2.10A {Saccharomyces cerevisiae}
Probab=36.93 E-value=21 Score=22.57 Aligned_cols=20 Identities=50% Similarity=0.757 Sum_probs=15.9
Q ss_pred HHhHHHHHhhhhhhHHHHHHH
Q 024148 170 LDNLQKDLQARESSQKQLKDE 190 (272)
Q Consensus 170 Ld~LqK~LqaRE~SQkQLKDe 190 (272)
+-||||.+. +|+-|+|||.|
T Consensus 6 itnlqkkir-kelkqrqlkqe 25 (26)
T 1m46_B 6 ITNLQKKIR-KELKQRQLKQE 25 (26)
T ss_dssp HHHHHHHHH-HHHHHHHHHHC
T ss_pred HHHHHHHHH-HHHHHHHHhcc
Confidence 567888775 68899999976
No 43
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=36.65 E-value=1.6e+02 Score=23.46 Aligned_cols=81 Identities=11% Similarity=0.116 Sum_probs=53.4
Q ss_pred hhchHHHHHHHHHHHhhhhhhhhhhhhhHHH-HHHHhhhHhhhHHHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhchhh
Q 024148 79 AKNMEDEICKLQKTLEERNGRLQASACTAEK-YLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLK 157 (272)
Q Consensus 79 ak~ME~Ei~kLqK~Leek~eQL~as~~stEk-yl~eLD~lRSQLs~TqATAeaSAaSAqsaqlqCl~L~keL~eK~~sLk 157 (272)
|-++|-|-.+||..|+..+...+.+..-+=- .+-|+-.|..|...+-+.+-++-...-.-.=-|-.|.+..-.-...|+
T Consensus 15 a~tLe~Eta~L~~al~~edsd~E~~~~rilhdl~seV~~LK~dv~~~L~k~~~e~qe~~~FIKa~kvL~~rns~DI~~ir 94 (101)
T 4aj5_1 15 ASTLDCETARLQRALDGEESDFEDYPMRILYDLHSEVQTLKDDINILLDKARLENQEGIDFIKATKVLMEKNSMDIMKIR 94 (101)
T ss_dssp HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4578999999999999776555433222111 224566777777777776666666555666678888777555566666
Q ss_pred hh
Q 024148 158 EH 159 (272)
Q Consensus 158 Eh 159 (272)
||
T Consensus 95 e~ 96 (101)
T 4aj5_1 95 EY 96 (101)
T ss_dssp HH
T ss_pred HH
Confidence 66
No 44
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=36.02 E-value=75 Score=23.95 Aligned_cols=17 Identities=24% Similarity=0.358 Sum_probs=13.4
Q ss_pred HHHHHHhhhHhhhHHHH
Q 024148 108 EKYLMQLDGLRSQLAAT 124 (272)
Q Consensus 108 Ekyl~eLD~lRSQLs~T 124 (272)
..|-.++.+||.|+..+
T Consensus 52 ~~ye~~i~~Lr~~i~~~ 68 (93)
T 3s4r_A 52 DLYEEEMRELRRQVDQL 68 (93)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44888999999988754
No 45
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=36.00 E-value=14 Score=33.24 Aligned_cols=53 Identities=19% Similarity=0.353 Sum_probs=11.5
Q ss_pred CccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHHH
Q 024148 22 PAREIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEI 86 (272)
Q Consensus 22 ~~~elDPLLkDL~EKK~sfRrnvvsLaaELK~~R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei 86 (272)
-.-.+++|+.+|.++. ++.++..+-..-.+-|.+++..|++|+.|...+|+|+
T Consensus 318 l~~~v~~l~d~l~~~~------------~~~~~~~~~~e~~kklee~~~~r~e~~~~~~~~e~~~ 370 (386)
T 2bnx_A 318 LQIDIERLVDQMIDKT------------KVEKSEAKATELEKKLDSELTARHELQVEMKKMENDF 370 (386)
T ss_dssp CCCCCTTTC-----CT------------HHHHHHTTTCC--------------------------
T ss_pred ccchHHHHHHHHhhhh------------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3467788998888764 2223333333445668889999999999999999975
No 46
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=35.68 E-value=43 Score=23.21 Aligned_cols=26 Identities=15% Similarity=0.213 Sum_probs=17.7
Q ss_pred HhhH-HHHHHHhhchHHHHHHHHHHHh
Q 024148 69 TLTR-QEAEMKAKNMEDEICKLQKTLE 94 (272)
Q Consensus 69 t~tR-k~aE~kak~ME~Ei~kLqK~Le 94 (272)
..+| .+||.....+|.+|.+|...|.
T Consensus 3 ~~~~aefAERsV~KLek~ID~LEdeL~ 29 (52)
T 2z5i_A 3 LLSKNYHLENEVARLKKLVDDLEDELY 29 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456 6788777777777777765554
No 47
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=34.72 E-value=1.6e+02 Score=22.79 Aligned_cols=11 Identities=18% Similarity=0.441 Sum_probs=6.4
Q ss_pred HHhhhHhhhHH
Q 024148 112 MQLDGLRSQLA 122 (272)
Q Consensus 112 ~eLD~lRSQLs 122 (272)
.|+.+|++|++
T Consensus 108 eEl~eLq~qi~ 118 (119)
T 3ol1_A 108 EEIQELQAQIQ 118 (119)
T ss_dssp HHHHHHHSCC-
T ss_pred HHHHHHHHHhc
Confidence 46666666654
No 48
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=34.16 E-value=98 Score=24.25 Aligned_cols=47 Identities=26% Similarity=0.420 Sum_probs=24.6
Q ss_pred HHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHH
Q 024148 49 AELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLM 112 (272)
Q Consensus 49 aELK~~R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Leek~eQL~as~~stEkyl~ 112 (272)
.||..+.+||-.| +..--..||+||..|.+.+. +|+.-.+.+-.+.+
T Consensus 32 qELs~tfarLc~~-------------Vd~t~~eL~~EI~~L~~eI~----~LE~iqs~aK~LRn 78 (96)
T 1t3j_A 32 QEMATTFARLCQQ-------------VDMTQKHLEEEIARLSKEID----QLEKMQNNSKLLRN 78 (96)
T ss_dssp ---CCHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHH----HHHHHHHHhHHHHH
Confidence 4566666666443 34444578888877666543 44444455544333
No 49
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=29.93 E-value=40 Score=27.63 Aligned_cols=51 Identities=29% Similarity=0.264 Sum_probs=31.9
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhhHhhhHHHHHHhhHhhHHhH
Q 024148 85 EICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASA 135 (272)
Q Consensus 85 Ei~kLqK~Leek~eQL~as~~stEkyl~eLD~lRSQLs~TqATAeaSAaSA 135 (272)
.|.+|++.+++...+|+....-+|..+..++++=..++-.+..-...++||
T Consensus 93 ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~~l~~ia~~~l~~r~~~~~~ 143 (151)
T 1yke_B 93 KIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDSLIEDFVDGIANSKKSTAAA 143 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHH
Confidence 356666667777777777788899999999998888777666555555554
No 50
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=29.18 E-value=2.5e+02 Score=23.40 Aligned_cols=77 Identities=19% Similarity=0.272 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhH-----HHHHHhhHHHHHHHhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhhH
Q 024148 43 NVVSLAAELKEVRTRLASQEQC-----FVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGL 117 (272)
Q Consensus 43 nvvsLaaELK~~R~rLasQEq~-----~akEt~tRk~aE~kak~ME~Ei~kLqK~Leek~eQL~as~~stEkyl~eLD~l 117 (272)
+...|.-+|-.+|..|.++.-- ..++ ....++..-+..+.|+.+|+..|.+-..+-...-..-.+.=.||++|
T Consensus 14 ~qs~LeD~L~~~R~el~~~~~ri~~lE~~r~--~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeL 91 (154)
T 2ocy_A 14 KQSHLEEQLNKSLKTIASQKAAIENYNQLKE--DYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDL 91 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH--HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666533211 1222 11224445567788899998888776555444444445556899988
Q ss_pred hhhH
Q 024148 118 RSQL 121 (272)
Q Consensus 118 RSQL 121 (272)
=..|
T Consensus 92 TasL 95 (154)
T 2ocy_A 92 TASL 95 (154)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7666
No 51
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=29.07 E-value=29 Score=27.25 Aligned_cols=30 Identities=40% Similarity=0.475 Sum_probs=23.4
Q ss_pred hHhhhhhhhhHHH------hhhccchhhhhHHhhhh
Q 024148 237 EEIHKLKDEIKIM------SAHWKLKTKELESQRSN 266 (272)
Q Consensus 237 ~eIakLrdeirim------SaHW~~KTKELEsQlek 266 (272)
+||+.|..+|..| +-.|++|.--|+++|+.
T Consensus 54 ~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~~eLe~ 89 (96)
T 1t3j_A 54 EEIARLSKEIDQLEKMQNNSKLLRNKAVQLESELEN 89 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 5666666666655 67899999999999986
No 52
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=29.01 E-value=1.5e+02 Score=20.83 Aligned_cols=33 Identities=30% Similarity=0.393 Sum_probs=25.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024148 28 PLLKDLNEKKQSFRKNVVSLAAELKEVRTRLAS 60 (272)
Q Consensus 28 PLLkDL~EKK~sfRrnvvsLaaELK~~R~rLas 60 (272)
.||..|..|...|...|.++.-|++.-...+..
T Consensus 6 ~~~~~le~kl~~lEnIv~~l~~eve~~~~~lea 38 (65)
T 3m0d_C 6 KLLAELEGKLRVFENIVAVLNKEVEASHLALAT 38 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 478889999999998888877777777666653
No 53
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=28.40 E-value=35 Score=23.33 Aligned_cols=33 Identities=24% Similarity=0.545 Sum_probs=25.3
Q ss_pred HHHhhhhhhhchhhhhhhHhhhhHHHHHhHHHHHhh
Q 024148 144 ALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQA 179 (272)
Q Consensus 144 ~L~keL~eK~~sLkEhE~rV~~lgeQLd~LqK~Lqa 179 (272)
-|+-+|++...- =|.|+..|+..||.|+.-+++
T Consensus 9 dlvsel~~r~e~---LE~Ri~~LE~KLd~L~~~l~a 41 (43)
T 2pnv_A 9 DMISDLNERSED---FEKRIVTLETKLETLIGSIHA 41 (43)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHc
Confidence 455566665544 488999999999999988775
No 54
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma factor, transcription regulation; 2.60A {Escherichia coli} SCOP: a.177.1.1
Probab=27.43 E-value=2.9e+02 Score=23.62 Aligned_cols=64 Identities=20% Similarity=0.199 Sum_probs=38.7
Q ss_pred hhhhhchhhhhhhHhhhhHHHHHhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH-hcCCchhHHHHhh--hccCcchH
Q 024148 149 LDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAK-AGVNKDCELRKLL--DEVSPKNF 225 (272)
Q Consensus 149 L~eK~~sLkEhE~rV~~lgeQLd~LqK~LqaRE~SQkQLKDeVlriE~dIm~Avak-ag~~~d~El~kil--~evspkn~ 225 (272)
|.+--.+++=+--++.+|.++|-. .-+.|...|+.||+-... +|-.. .++.+.. .+..|..+
T Consensus 143 l~~~~~~ikl~~k~id~Lv~~lr~--------------~~~~ir~~Er~i~~l~v~~~~mpr-~~fi~~f~g~e~~~~w~ 207 (339)
T 1sig_A 143 LSEVFKQFRLVPKQFDYLVNSMRV--------------MMDRVRTQERLIMKLCVEQCKMPK-KNFITLFTGNETSDTWF 207 (339)
T ss_dssp HHHHHTTEEECHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHTTSCCCH-HHHHHHHTTTCSSGGGT
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHcCCCH-HHHHHHcccccCcHHHH
Confidence 444445566666667777766533 336788899999996644 55433 4666654 34455544
Q ss_pred Hh
Q 024148 226 ER 227 (272)
Q Consensus 226 e~ 227 (272)
++
T Consensus 208 ~~ 209 (339)
T 1sig_A 208 NA 209 (339)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 55
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=26.73 E-value=67 Score=31.98 Aligned_cols=45 Identities=24% Similarity=0.225 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCchhHHHHhhhccCcchHHhhhhhhccchhHh
Q 024148 186 QLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEI 239 (272)
Q Consensus 186 QLKDeVlriE~dIm~Avakag~~~d~El~kil~evspkn~e~inkll~~kD~eI 239 (272)
+|+.-+++-|+|++..| +||++-++++ -+|+..++.....+-+++
T Consensus 50 rLQglLdkqErDltkrI--------NELKnqLEdl-sKnsKdseqy~k~~~E~L 94 (562)
T 3ghg_A 50 RMKGLIDEVNQDFTNRI--------NKLKNSLFEY-QKNNKDSHSLTTNIMEIL 94 (562)
T ss_dssp HHHHHHHHHHHHHHHHH--------HHHHHHHTHH-HHHHHHHHHHHHHHHHTT
T ss_pred chhhhHHhhcCcHHHHH--------HHHHHHHHHH-HhhchhHHHHHHHHHHHH
Confidence 67777888888888877 5667777777 677766666655544443
No 56
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=26.40 E-value=2.8e+02 Score=23.09 Aligned_cols=49 Identities=24% Similarity=0.310 Sum_probs=35.5
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHhh
Q 024148 47 LAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEE 95 (272)
Q Consensus 47 LaaELK~~R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Lee 95 (272)
|..+++++...+..--.-+..|..-|..||...+.+|-|+..|---|=+
T Consensus 49 l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFe 97 (154)
T 2ocy_A 49 LKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFD 97 (154)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555667788888999999999999998888665533
No 57
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=26.12 E-value=2.3e+02 Score=21.98 Aligned_cols=66 Identities=20% Similarity=0.312 Sum_probs=39.8
Q ss_pred ccchhhhhhHHHH----HHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHhhhhhhh
Q 024148 25 EIDPLLKDLNEKK----QSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRL 100 (272)
Q Consensus 25 elDPLLkDL~EKK----~sfRrnvvsLaaELK~~R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Leek~eQL 100 (272)
|.|-+..+.+-=| .-|=.-|.+=-+|+-..|+.+-.-|+-.. |.- -.-|+||.+|...|+.++.|+
T Consensus 22 Efe~~~~e~~~~k~q~~~eyE~ki~~Qi~Emq~Ir~tvyeLE~~h~------kmK----q~YEeEI~rLr~eLe~r~~q~ 91 (92)
T 3vp9_A 22 EFLQVSQEANTYRLQNQKDYDFKMNQQLAEMQQIRNTVYERELTHR------KMK----DAYEEEIKHLKLGLEQRDHQI 91 (92)
T ss_dssp TTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHH----HHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHH----HHHHHHHHHHHHHHHHcCCCC
Confidence 4455555543222 25666677777888888887766665443 111 136999999999999999886
No 58
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=25.68 E-value=2.1e+02 Score=21.39 Aligned_cols=46 Identities=20% Similarity=0.301 Sum_probs=33.3
Q ss_pred HHHHhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhhHhhh
Q 024148 75 AEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQ 120 (272)
Q Consensus 75 aE~kak~ME~Ei~kLqK~Leek~eQL~as~~stEkyl~eLD~lRSQ 120 (272)
--...-.|..||..|.-.+|+-..+|.--..---.|..+||...++
T Consensus 25 Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD~Rl~~ 70 (83)
T 2xdj_A 25 LQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQIDSLSSG 70 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445567889999999999988888877666666677888866654
No 59
>2nox_A Tryptophan 2,3-dioxygenase; helical bundle, heme protein, oxidoreductase; HET: HEM; 2.40A {Cupriavidus metallidurans}
Probab=25.54 E-value=3.4e+02 Score=24.15 Aligned_cols=120 Identities=21% Similarity=0.261 Sum_probs=69.1
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhhHhhhHHHHHH
Q 024148 47 LAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKA 126 (272)
Q Consensus 47 LaaELK~~R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Leek~eQL~as~~stEkyl~eLD~lRSQLs~TqA 126 (272)
+.-||..|+..|..-+..-+ -.|=.-|.+.++.|.+--.=| .+.+.+.|+ .+|..|.
T Consensus 64 il~El~~a~~~l~~~~~~~a-------------~~~L~Rv~~i~~~L~~~~~vL--~tMtp~dF~----~FR~~Lg---- 120 (281)
T 2nox_A 64 MLHELRAARDGVKSDQLQPA-------------FKMLARVSRIMDQLVQAWNVL--ATMTPPEYS----AMRPYLG---- 120 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHH-------------HHHHHHHHHHHHHHHHTHHHH--TTCCHHHHH----HHGGGTT----
T ss_pred HHHHHHHHHHHHhCCCHHHH-------------HHHHHHHHHHHHHHHHHHHHH--cCCCHHHHH----HHHHhcC----
Confidence 45677888877764332211 122234667777777766666 678899998 4677665
Q ss_pred hhHhhHHhHHHHHHHHHHHHhhhhhhhc-hhhhhhhHhhhhHHHHHhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 024148 127 TADASAASAQSAQLQCLALVKELDEKNS-SLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKA 205 (272)
Q Consensus 127 TAeaSAaSAqsaqlqCl~L~keL~eK~~-sLkEhE~rV~~lgeQLd~LqK~LqaRE~SQkQLKDeVlriE~dIm~Avaka 205 (272)
.||.. ||+|..++..+=+. |+. .++-|+. -.+. ...|++. +...-|.|+|++ .+++.
T Consensus 121 --~aSGF--QS~qyR~iE~~lG~--k~~~~l~~~~~----~p~~----~~~l~~~-~~~pSL~d~~~~-------~L~r~ 178 (281)
T 2nox_A 121 --ASSGF--QSYQYREIEFILGN--KNAAMLRPHAH----RPEH----LELVETA-LHTPSMYDEAIR-------LMARR 178 (281)
T ss_dssp --TCCGG--GCHHHHHHHHHTTC--CCGGGGGGGTT----CHHH----HHHHHHH-HHSCCHHHHHHH-------HHHHT
T ss_pred --Ccchh--hHHHHHHHHHHhCC--CcHHHhccccc----CHHH----HHHHHHH-hcCCCHHHHHHH-------HHHHc
Confidence 45554 99999999876552 332 3343421 2222 3333333 333457777765 34566
Q ss_pred cCCchh
Q 024148 206 GVNKDC 211 (272)
Q Consensus 206 g~~~d~ 211 (272)
|.....
T Consensus 179 G~~~~~ 184 (281)
T 2nox_A 179 GFQIDP 184 (281)
T ss_dssp TCCCCH
T ss_pred CCCCch
Confidence 765543
No 60
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=25.43 E-value=4.6e+02 Score=25.27 Aligned_cols=59 Identities=19% Similarity=0.270 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHhhh
Q 024148 38 QSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEER 96 (272)
Q Consensus 38 ~sfRrnvvsLaaELK~~R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Leek 96 (272)
+.|.++..++..-+-++-..|...|...+.|-.-+..||..++-+|+--.+++..++.+
T Consensus 462 ~~fl~~~~~~~~~ilq~d~~l~~~~k~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~ 520 (592)
T 1f5n_A 462 QTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQK 520 (592)
T ss_dssp HHHHHHTHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888999998888888888888888888777777777777666666555565555544
No 61
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=25.29 E-value=1.5e+02 Score=27.09 Aligned_cols=47 Identities=17% Similarity=0.201 Sum_probs=28.0
Q ss_pred HHHHhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhhHhhhH
Q 024148 75 AEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQL 121 (272)
Q Consensus 75 aE~kak~ME~Ei~kLqK~Leek~eQL~as~~stEkyl~eLD~lRSQL 121 (272)
.+.+...++.+|..++.++++-+++|+....---++..++.+|+..+
T Consensus 15 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnI 61 (403)
T 4etp_A 15 LKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNI 61 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCe
Confidence 33444556666666666666666666655555555666776666544
No 62
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=25.08 E-value=2.9e+02 Score=22.84 Aligned_cols=18 Identities=22% Similarity=0.363 Sum_probs=10.9
Q ss_pred HHHHHHhhchHHHHHHHH
Q 024148 73 QEAEMKAKNMEDEICKLQ 90 (272)
Q Consensus 73 k~aE~kak~ME~Ei~kLq 90 (272)
..||.|.+.||+|+.-..
T Consensus 38 e~aE~k~~eLEeeL~~v~ 55 (155)
T 2efr_A 38 ELSEGKSAELEEELKTVT 55 (155)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456666666666665544
No 63
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=24.66 E-value=1e+02 Score=23.10 Aligned_cols=29 Identities=21% Similarity=0.322 Sum_probs=19.2
Q ss_pred HHHHHHHHhhhhhhhhhhhhhHHHHHHHh
Q 024148 86 ICKLQKTLEERNGRLQASACTAEKYLMQL 114 (272)
Q Consensus 86 i~kLqK~Leek~eQL~as~~stEkyl~eL 114 (272)
|..||.-|+.|+++|+.-..--+.+-.+|
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L 49 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELEL 49 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888888887777655554444333
No 64
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=24.18 E-value=60 Score=24.65 Aligned_cols=38 Identities=34% Similarity=0.402 Sum_probs=27.4
Q ss_pred hhhhhhhchhhhhhhHhhhhHHHHHhHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 024148 147 KELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDI 198 (272)
Q Consensus 147 keL~eK~~sLkEhE~rV~~lgeQLd~LqK~LqaRE~SQkQLKDeVlriE~dI 198 (272)
+.++-=+..|.|-|--+.+|-+|.+. ||+|+-|+|++.
T Consensus 29 k~~~Hl~~LL~EsEatnarL~eq~~l--------------LK~EIRRlERnq 66 (71)
T 3bbp_D 29 KSADHLNGLLRETEATNAILMEQIKL--------------LKSEIRRLERNQ 66 (71)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHH--------------HHHHHHHHHhhH
Confidence 33444466777888888889998876 577788888763
No 65
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=23.38 E-value=2.3e+02 Score=21.10 Aligned_cols=29 Identities=17% Similarity=0.272 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 024148 39 SFRKNVVSLAAELKEVRTRLASQEQCFVK 67 (272)
Q Consensus 39 sfRrnvvsLaaELK~~R~rLasQEq~~ak 67 (272)
.+.+.|--|+.|.-+...+|-.+++-+.+
T Consensus 3 ~L~k~i~~l~~E~eel~~klk~~~ee~~~ 31 (71)
T 1s1c_X 3 MLTKDIEILRRENEELTEKMKKAEEEYKL 31 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36678888999999999999998887764
No 66
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=22.66 E-value=2.4e+02 Score=21.04 Aligned_cols=28 Identities=21% Similarity=0.355 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 024148 40 FRKNVVSLAAELKEVRTRLASQEQCFVK 67 (272)
Q Consensus 40 fRrnvvsLaaELK~~R~rLasQEq~~ak 67 (272)
+.+.|--|+.|.-+...+|-.+++-+.+
T Consensus 2 ~~k~v~~l~~E~eel~~klk~~~ee~~~ 29 (71)
T 1uix_A 2 STSDVANLANEKEELNNKLKEAQEQLSR 29 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999999999999887775
No 67
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=22.61 E-value=1.5e+02 Score=24.77 Aligned_cols=19 Identities=21% Similarity=0.330 Sum_probs=8.3
Q ss_pred HHHhhchHHHHHHHHHHHh
Q 024148 76 EMKAKNMEDEICKLQKTLE 94 (272)
Q Consensus 76 E~kak~ME~Ei~kLqK~Le 94 (272)
+.+++.+-.||..|+..|.
T Consensus 112 eakI~aL~~Ei~~Lr~qL~ 130 (175)
T 3lay_A 112 TAKINAVAKEMESLGQKLD 130 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 68
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=22.41 E-value=2.2e+02 Score=22.37 Aligned_cols=47 Identities=17% Similarity=0.282 Sum_probs=32.8
Q ss_pred HHHHhhchHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhhhHhhhH
Q 024148 75 AEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQL 121 (272)
Q Consensus 75 aE~kak~ME~Ei~kLqK~Leek~eQL~as~~stEkyl~eLD~lRSQL 121 (272)
++...+..+.|+.+|+..|.+...+-...-..-.+.-.||++|=..|
T Consensus 17 le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasL 63 (97)
T 2eqb_B 17 LKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL 63 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444558889999999988876665555555555668999886666
No 69
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=22.03 E-value=19 Score=33.38 Aligned_cols=34 Identities=32% Similarity=0.370 Sum_probs=0.0
Q ss_pred CCCCCCCCccccCCCCCCCCCCccccchhhhhhH
Q 024148 1 MSASGHRSSMSTSSSSSSSSVPAREIDPLLKDLN 34 (272)
Q Consensus 1 ~~~~~~~~~~~~~~~~~sss~~~~elDPLLkDL~ 34 (272)
|.+-.||-+.+.|.|++.||.+..||-|+-|--.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (467)
T 2j63_A 21 MASKRCRQCSGDSASSSTSSLSPSELPPSKKAAG 54 (467)
T ss_dssp ----------------------------------
T ss_pred hhhhhhhhccCCcccccccCCCccccCccccccC
Confidence 4455678777777778888889999999866543
No 70
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=21.99 E-value=2.9e+02 Score=25.91 Aligned_cols=98 Identities=14% Similarity=0.116 Sum_probs=0.0
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHhhhhhhhhhhhh
Q 024148 26 IDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASAC 105 (272)
Q Consensus 26 lDPLLkDL~EKK~sfRrnvvsLaaELK~~R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Leek~eQL~as~~ 105 (272)
||+=|.+| |.-+.==-|+.+-+.+|+.+=...--+-|. +...+...+-.+.+.|.+||.+|+..+.....+++.-..
T Consensus 36 V~~~l~~L-E~~l~elsn~ts~v~~Lvk~iq~~~~~~Q~--~~~d~~e~~tq~skkml~~~~~~e~~~~~~~~~i~~l~~ 112 (409)
T 1m1j_C 36 TDGELLEI-EGLLQQATNSTGSIEYLIQHIKTIYPSEKQ--TLPQSIEQLTQKSKKIIEEIIRYENTILAHENTIQQLTD 112 (409)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHSCSSTT--CCSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred chhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcccccC--CCCCchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Q ss_pred hHHHHHHHhhhHhhhHHHHHH
Q 024148 106 TAEKYLMQLDGLRSQLAATKA 126 (272)
Q Consensus 106 stEkyl~eLD~lRSQLs~TqA 126 (272)
-.+.--..++.|..++....+
T Consensus 113 ~~~~~~~~i~~l~~~i~~l~~ 133 (409)
T 1m1j_C 113 MHIMNSNKITQLKQKIAQLES 133 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHHHHH
No 71
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=21.61 E-value=2.4e+02 Score=24.64 Aligned_cols=55 Identities=13% Similarity=0.138 Sum_probs=26.2
Q ss_pred CCCccccCCCCCCCCCCccccchhh-hhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024148 6 HRSSMSTSSSSSSSSVPAREIDPLL-KDLNEKKQSFRKNVVSLAAELKEVRTRLAS 60 (272)
Q Consensus 6 ~~~~~~~~~~~~sss~~~~elDPLL-kDL~EKK~sfRrnvvsLaaELK~~R~rLas 60 (272)
|.++|.+.+++-..--++..|+||+ ++-..===+||.+|..+..++...+.+|-.
T Consensus 7 ~~~~~~~~~~~~~~~~~~p~~~~l~l~Ea~~DSP~FRa~l~~~E~~~~~l~~~l~k 62 (407)
T 4h8s_A 7 HSSGVDLGTENLYFQSNAPAVDKLLLEEALQDSPQTRSLLSVFEEDAGTLTDYTNQ 62 (407)
T ss_dssp ------------CCCCCCCCCCCCCSTTSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCcchhhccCCCCCcCCccHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455544444333333333445553 222222347999999999999888877754
No 72
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=20.94 E-value=10 Score=30.07 Aligned_cols=85 Identities=21% Similarity=0.383 Sum_probs=51.7
Q ss_pred CCCccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHhhhhhh
Q 024148 20 SVPAREIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGR 99 (272)
Q Consensus 20 s~~~~elDPLLkDL~EKK~sfRrnvvsLaaELK~~R~rLasQEq~~akEt~tRk~aE~kak~ME~Ei~kLqK~Leek~eQ 99 (272)
+.|++|+|-+|..|+.. =..+||+.|-+|-- .-+|+=+-.|+.++ ...+|.|++.|+...+.-..+
T Consensus 15 ~m~v~elN~~L~~Ls~~----------e~~~lK~~RR~lKN--R~yAq~CR~rk~~~--~~~LE~e~~~L~~e~e~L~~E 80 (107)
T 3a5t_A 15 TMSVRELNQHLRGLSKE----------EIIQLKQRRRTLKN--RGYAASCRVKRVTQ--KEELEKQKAELQQEVEKLASE 80 (107)
T ss_dssp HSCHHHHHHTTTTCCHH----------HHHHHHHHHHHHHH--HHHHHHHHHHHHHH--HHHHHHHHTTTSSTTTTTTST
T ss_pred cCCHHHHHHHHhCCCHH----------HHHHHHHHHHhhhh--HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 45788888888777632 24678999988754 45676666777664 456778877766543332222
Q ss_pred hhhhhhhHHHHHHHhhhHhhhHHHHH
Q 024148 100 LQASACTAEKYLMQLDGLRSQLAATK 125 (272)
Q Consensus 100 L~as~~stEkyl~eLD~lRSQLs~Tq 125 (272)
-..+..|+|.++.++..-.
T Consensus 81 -------n~~l~~E~~~lk~k~e~L~ 99 (107)
T 3a5t_A 81 -------NASMKLELDALRSKYEALQ 99 (107)
T ss_dssp -------TSHHHHTTTSSSSCC----
T ss_pred -------HHHHHHHHHHHHHHHHHHH
Confidence 2235567777777665444
No 73
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=20.76 E-value=5.6e+02 Score=24.51 Aligned_cols=94 Identities=13% Similarity=0.182 Sum_probs=0.0
Q ss_pred hhhhhhhhhHHHHH-HHhhhHhhhHHHHHHhhHhhHHhHHHHHHHHHHHHhhhhhhhchhhhhhhHhhhhHHHHHhHHHH
Q 024148 98 GRLQASACTAEKYL-MQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKD 176 (272)
Q Consensus 98 eQL~as~~stEkyl-~eLD~lRSQLs~TqATAeaSAaSAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~lgeQLd~LqK~ 176 (272)
|+|..+....+.-+ +.|.+|.-.|... +.+..++.--=..|.-.+..+...+.+.+..|+....+|+..+++
T Consensus 85 C~l~D~L~k~q~~V~~~LqeLe~~l~~l-------sn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~ 157 (464)
T 1m1j_B 85 CELQTTLLKQEKTVKPVLRDLKDRVAKF-------SDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNY 157 (464)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhhhhhHhHHHHHHHHHHHH-------hhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHH
Q ss_pred HhhhhhhH------------HHHHHHHHHHHHHH
Q 024148 177 LQARESSQ------------KQLKDEVFRIEQDI 198 (272)
Q Consensus 177 LqaRE~SQ------------kQLKDeVlriE~dI 198 (272)
++..--++ .+|+..+.++|..|
T Consensus 158 i~~~~~~~~~~~i~~L~~~~~~l~~ki~~l~~~~ 191 (464)
T 1m1j_B 158 IKDNLDNNIPSSLRVLRAVIDSLHKKIQKLENAI 191 (464)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHH
No 74
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=20.61 E-value=38 Score=28.31 Aligned_cols=35 Identities=29% Similarity=0.466 Sum_probs=32.0
Q ss_pred cCcchHHhhhhhhccchhHhhhhhhhhHHHhhhcc
Q 024148 220 VSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWK 254 (272)
Q Consensus 220 vspkn~e~inkll~~kD~eIakLrdeirimSaHW~ 254 (272)
.+|+.++.+.+.+..-..++.+|.+=|...-++|+
T Consensus 51 P~~~ql~~v~kdi~~a~~eL~~m~~~i~~ekP~WK 85 (141)
T 3okq_A 51 PAKKKLETVSKDLENAQADVLKLQEFIDTEKPHWK 85 (141)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhH
Confidence 57888999999998889999999999999999997
No 75
>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=20.45 E-value=59 Score=28.34 Aligned_cols=25 Identities=12% Similarity=0.356 Sum_probs=22.7
Q ss_pred hhhhhhhHhhhhHHHHHhHHHHHhh
Q 024148 155 SLKEHEDRVTRLGQQLDNLQKDLQA 179 (272)
Q Consensus 155 sLkEhE~rV~~lgeQLd~LqK~Lqa 179 (272)
++.+++.||++|.++|+.|++-+..
T Consensus 5 ~~~~~~~r~~~l~~~~~~l~~~~~~ 29 (217)
T 2gtl_M 5 LVKNQNLHIDYLAKKLHDIEEEYNK 29 (217)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ehhhhHHHHHHHHHHHHHHHHHHhh
Confidence 4678999999999999999999974
No 76
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=20.43 E-value=7.5e+02 Score=25.86 Aligned_cols=40 Identities=25% Similarity=0.352 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCchhHHHHhh--------hccCcchH
Q 024148 186 QLKDEVFRIEQDIMQTIAKAGVNKDCELRKLL--------DEVSPKNF 225 (272)
Q Consensus 186 QLKDeVlriE~dIm~Avakag~~~d~El~kil--------~evspkn~ 225 (272)
.++.-|-.|-.|-..|+|+||...--.|+.=| |--||=|.
T Consensus 794 kf~~~v~aig~~ti~~ia~Agpe~q~kll~~Lgl~~~litdG~sPinL 841 (861)
T 2zuo_A 794 KFKEMTEALGPGTIRDLAVAGPEMQVKLLQSLGLKSTLITDGSSPINL 841 (861)
T ss_dssp HHHHHHHHSCTTHHHHTGGGCC--------------------------
T ss_pred HHHHHHHhhChHHHHHHHhcChHHHHHHHHhCCCceEEecCCCChHHH
Confidence 56666778888999999999977666665432 55677774
No 77
>2lic_A Vitellogenin; lipid transport; HET: SEP; NMR {Apis mellifera}
Probab=20.24 E-value=47 Score=22.10 Aligned_cols=15 Identities=67% Similarity=0.570 Sum_probs=8.0
Q ss_pred CCCccccCCCCCCCC
Q 024148 6 HRSSMSTSSSSSSSS 20 (272)
Q Consensus 6 ~~~~~~~~~~~~sss 20 (272)
-|...|||||+-|||
T Consensus 10 lrtdistssssisss 24 (35)
T 2lic_A 10 LRTDISTSSSSISSS 24 (35)
T ss_dssp CSSSSCSCSSCCSTT
T ss_pred hhhcccccccccccc
Confidence 355566665554444
Done!