BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024150
         (272 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4FID|A Chain A, Crystal Structure Of A Heterotrimeric G-Protein Subunit
           From Entamoeba Histolytica, Ehg-Alpha-1
 pdb|4FID|B Chain B, Crystal Structure Of A Heterotrimeric G-Protein Subunit
           From Entamoeba Histolytica, Ehg-Alpha-1
          Length = 340

 Score = 31.2 bits (69), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)

Query: 200 TTLPPELTVKGGKSAIEVANYIQRVLAGTLGFECTNLTRKDKYSILAG 247
            T+ PE T  GG +A+  A YIQ++  G L  E  N++  D  + + G
Sbjct: 251 NTIFPEYT--GGDNAVXGAQYIQQLFTGKLQTEEXNISGADGTANIEG 296


>pdb|1RLZ|A Chain A, Deoxyhypusine Synthase Holoenzyme In Its High Ionic
           Strength, Low Ph Crystal Form
 pdb|1ROZ|A Chain A, Deoxyhypusine Synthase Holoenzyme In Its Low Ionic
           Strength, High Ph Crystal Form
 pdb|1ROZ|B Chain B, Deoxyhypusine Synthase Holoenzyme In Its Low Ionic
           Strength, High Ph Crystal Form
 pdb|1RQD|A Chain A, Deoxyhypusine Synthase Holoenzyme In Its Low Ionic
           Strength, High Ph Crystal Form With The Inhibitor Gc7
           Bound In The Active Site
 pdb|1RQD|B Chain B, Deoxyhypusine Synthase Holoenzyme In Its Low Ionic
           Strength, High Ph Crystal Form With The Inhibitor Gc7
           Bound In The Active Site
          Length = 369

 Score = 30.4 bits (67), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 198 HGTTLPPELTVKGGKSAIEVANYIQRVLA-GTLGFECTNLTR 238
           H +TLPPE T   G       NY   + A GT GF+ TN  R
Sbjct: 20  HSSTLPPESTQVRGYDFNRGVNYRALLEAFGTTGFQATNFGR 61


>pdb|1DHS|A Chain A, Crystal Structure Of The Nad Complex Of Human
           Deoxyhypusine Synthase
          Length = 361

 Score = 30.4 bits (67), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 198 HGTTLPPELTVKGGKSAIEVANYIQRVLA-GTLGFECTNLTR 238
           H +TLPPE T   G       NY   + A GT GF+ TN  R
Sbjct: 12  HSSTLPPESTQVRGYDFNRGVNYRALLEAFGTTGFQATNFGR 53


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.139    0.415 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,632,104
Number of Sequences: 62578
Number of extensions: 304674
Number of successful extensions: 541
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 541
Number of HSP's gapped (non-prelim): 4
length of query: 272
length of database: 14,973,337
effective HSP length: 97
effective length of query: 175
effective length of database: 8,903,271
effective search space: 1558072425
effective search space used: 1558072425
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)