Query 024150
Match_columns 272
No_of_seqs 239 out of 2037
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 03:15:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024150.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024150hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iuq_A Glycerol-3-phosphate ac 99.7 4.7E-18 1.6E-22 155.7 6.0 164 59-229 97-341 (367)
2 2li5_B Ubiquitin-like modifier 16.4 12 0.00041 21.2 -1.7 11 261-271 14-24 (34)
3 2kdu_B MUNC13-1, protein UNC-1 12.5 88 0.003 18.5 1.3 15 258-272 10-24 (36)
4 2doh_C Fragment, plasminogen-b 10.9 1E+02 0.0034 17.4 1.1 12 257-268 5-16 (30)
5 2kwl_A ACP, acyl carrier prote 9.5 2.8E+02 0.0097 18.2 3.5 32 211-242 4-35 (84)
6 1x3o_A Acyl carrier protein; s 7.7 3.2E+02 0.011 17.5 3.1 28 213-240 2-29 (80)
7 1gq2_A Malic enzyme; oxidoredu 7.7 1.3E+03 0.046 21.8 8.7 98 157-258 135-257 (555)
8 2qnw_A Acyl carrier protein; m 7.4 2.5E+02 0.0084 18.5 2.4 29 212-240 3-31 (82)
9 3ivz_A Nitrilase; alpha-beta s 7.3 2E+02 0.007 23.7 2.2 18 149-166 28-46 (262)
10 3ndq_A Transcription elongatio 7.3 4.1E+02 0.014 19.3 3.6 32 211-244 38-69 (108)
No 1
>1iuq_A Glycerol-3-phosphate acyltransferase; open twisted alpha/beta, four helix bundle; 1.55A {Cucurbita moschata} SCOP: c.112.1.1 PDB: 1k30_A
Probab=99.71 E-value=4.7e-18 Score=155.68 Aligned_cols=164 Identities=15% Similarity=0.109 Sum_probs=108.7
Q ss_pred hHHHHHHHHHHhhceEEEEEC-------cCCCCCCCCCCcEEEEeCCCCCChhhhhhhhcCC-------cEEEEEe----
Q 024150 59 LPERLAWYNYKLLGIKVVVKG-------TPPPAPKNGQSGVLFICNHRTVLDPVVTAVALGR-------KISCVTY---- 120 (272)
Q Consensus 59 ~~~~~~~~~l~~~G~~v~v~g-------~~~~p~~~~~~~~IivaNH~S~lD~~~l~~~~~~-------~~~~v~~---- 120 (272)
+.+.|.+.+++..|.+ |.| .++++. ++++|++|||||.+|++++..++.+ ++.|+++
T Consensus 97 ~~~~~ir~li~~~~s~--V~G~e~~~~~~E~l~~---~~~vIfisNHQS~~D~~vi~~~l~~~~~~l~~~~~fVAk~eL~ 171 (367)
T 1iuq_A 97 FGQNYIRPLIDFGNSF--VGNLSLFKDIEEKLQQ---GHNVVLISNHQTEADPAIISLLLEKTNPYIAENTIFVAGDRVL 171 (367)
T ss_dssp HHHHHHGGGBCGGGCE--EECHHHHHHHHHHHHT---TCEEEEEECCCCTTHHHHHHHHHTTTCHHHHHHCEEEECTHHH
T ss_pred HHHHHHHHHHhhcCCE--eecchhhhhHHhhccC---CCcEEEEECCccchhHHHHHHHHhhcccccccceEEEeehhhh
Confidence 5567777777777777 677 666654 6899999999999999999999865 8999995
Q ss_pred ccchH---HHHHhcCCceEe----e------cCCh-hhHHH---HHHHHhC-Cc-EEEEeCccccCC----CCc--cCch
Q 024150 121 SISKF---TEIISPIKAVAL----S------RERE-KDAAH---IKQLLEE-GD-LVICPEGTTCRE----PFL--LRFS 175 (272)
Q Consensus 121 ~~p~~---g~~~~~~g~i~v----~------R~~~-~~~~~---l~~~L~~-G~-lvIFPEGTrs~~----~~l--~~Fk 175 (272)
+.|++ +.. +.+++|+. + |++. .+.++ +.+.|++ |. ++|||||||+++ +.+ .+|+
T Consensus 172 ~~Pl~~Pfs~g-~~l~cI~~kk~id~~p~l~r~~~r~n~ksl~~~~~~Lk~GG~sI~IFPEGTRsR~~~~~g~l~~~~Fk 250 (367)
T 1iuq_A 172 ADPLCKPFSIG-RNLICVYSKKHMFDIPELTETKRKANTRSLKEMALLLRGGSQLIWIAPSGGRDRPDPSTGEWYPAPFD 250 (367)
T ss_dssp HCTTTHHHHHT-SEEEECCCGGGTTSSGGGHHHHHHHHHHHHHHHHHHHHHCCCEEEECTTCSCCCBCTTTCCBCCCCCC
T ss_pred cCccccchhhh-hheeeEEecccCCCcchhhhhhhHHHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCCCCCcccccccc
Confidence 34555 333 44556664 4 4332 22333 4567787 54 789999999996 444 5587
Q ss_pred HHHH----h----cCCc--EEEEEEecCCCCcc---------CC-------C-----CCCccc---cCC----CCCHHHH
Q 024150 176 ALFA----E----LTDR--IVPVAINTKQSVFH---------GT-------T-----LPPELT---VKG----GKSAIEV 217 (272)
Q Consensus 176 ~~~a----~----~~~p--IvPV~I~~~~~~~~---------g~-------~-----lp~~~~---~~~----~~~~~el 217 (272)
.+.. . .++| |+||+|.+. .++. |. . .+++.. ... .+..+++
T Consensus 251 ~gs~~~~~~LA~ksg~P~hIvPvaI~t~-~imppp~~ve~~~g~~r~i~~~~V~v~ig~pI~~~~l~~~~e~~~e~~~~l 329 (367)
T 1iuq_A 251 ASSVDNMRRLIQHSDVPGHLFPLALLCH-DIMPPPSQVEIEIGEKRVIAFNGAGLSVAPEISFEEIAATHKNPEEVREAY 329 (367)
T ss_dssp HHHHHHHHHHHHTSSSCEEEEEEEEECG-GGSCCC----------CCCCCBCCEEEECCCCCHHHHHHTSSSHHHHHHHH
T ss_pred chhhhHHHHHHHHcCCCceEEEEEEEec-cccCCcccccccccccceeecccEEEEECCccchhhccccccchHHHHHHH
Confidence 5322 2 3589 999999944 4331 11 0 222221 111 1224579
Q ss_pred HHHHHHHHHHHh
Q 024150 218 ANYIQRVLAGTL 229 (272)
Q Consensus 218 a~~v~~~I~~~l 229 (272)
++.+++.|++.+
T Consensus 330 ~e~v~~~I~~~y 341 (367)
T 1iuq_A 330 SKALFDSVAMQY 341 (367)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998887
No 2
>2li5_B Ubiquitin-like modifier-activating enzyme ATG7; autophagy, protein transport; NMR {Saccharomyces cerevisiae}
Probab=16.42 E-value=12 Score=21.20 Aligned_cols=11 Identities=45% Similarity=0.441 Sum_probs=8.1
Q ss_pred HHHHhhhhhcc
Q 024150 261 EKERLKIQEME 271 (272)
Q Consensus 261 ~~~~~~~~~~~ 271 (272)
|-+|||+++.|
T Consensus 14 everlgndvfe 24 (34)
T 2li5_B 14 EVERLGNDVFE 24 (34)
T ss_dssp CCSSCCGGGCC
T ss_pred HHHHhcCcccc
Confidence 45789998764
No 3
>2kdu_B MUNC13-1, protein UNC-13 homolog A; calmodulin, calcium, acetylation, methylation, alternative splicing, cell junction, cell membrane, coiled coil; NMR {Xenopus laevis}
Probab=12.45 E-value=88 Score=18.53 Aligned_cols=15 Identities=27% Similarity=0.434 Sum_probs=11.1
Q ss_pred hhhHHHHhhhhhccC
Q 024150 258 KEKEKERLKIQEMED 272 (272)
Q Consensus 258 ~~~~~~~~~~~~~~~ 272 (272)
++.-|+|+..||-++
T Consensus 10 ra~nKVR~qlqe~~~ 24 (36)
T 2kdu_B 10 RAFNKVRMQLQEARG 24 (36)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcccC
Confidence 456789999998653
No 4
>2doh_C Fragment, plasminogen-binding group A streptococcal M-like PAM; lysine-binding site, kringle domains, hydrolase; HET: DIO; 2.30A {Homo sapiens} PDB: 2kj4_B 1i5k_C 2doi_C
Probab=10.93 E-value=1e+02 Score=17.36 Aligned_cols=12 Identities=33% Similarity=0.440 Sum_probs=9.2
Q ss_pred hhhhHHHHhhhh
Q 024150 257 EKEKEKERLKIQ 268 (272)
Q Consensus 257 ~~~~~~~~~~~~ 268 (272)
+++.|++||++.
T Consensus 5 ~d~~eL~rLknE 16 (30)
T 2doh_C 5 TADAELQRLKNE 16 (30)
T ss_dssp CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 467788999874
No 5
>2kwl_A ACP, acyl carrier protein; structural genomics, seattle structura genomics center for infectious disease, ssgcid, lipid bindi protein; NMR {Borrelia burgdorferi}
Probab=9.51 E-value=2.8e+02 Score=18.20 Aligned_cols=32 Identities=9% Similarity=0.241 Sum_probs=25.3
Q ss_pred CCCHHHHHHHHHHHHHHHhCCccccCCHHHHH
Q 024150 211 GKSAIEVANYIQRVLAGTLGFECTNLTRKDKY 242 (272)
Q Consensus 211 ~~~~~ela~~v~~~I~~~l~~~~~~~~~~dk~ 242 (272)
..+++++.+++++.+++.++.+..+++.++..
T Consensus 4 ~m~~~~i~~~l~~~i~~~l~~~~~~i~~~~~l 35 (84)
T 2kwl_A 4 SMDNDEIFSKVRSIISEQLDKKEDEITTDSRF 35 (84)
T ss_dssp CSTHHHHHHHHHHHHHHHHCCCGGGCCTTTHH
T ss_pred CCCHHHHHHHHHHHHHHHhCCCcccCCCCCch
Confidence 35788999999999999999877666655543
No 6
>1x3o_A Acyl carrier protein; structural genomics, riken structural genomics/proteomics in RSGI, NPPSFA; 1.50A {Thermus thermophilus}
Probab=7.69 E-value=3.2e+02 Score=17.48 Aligned_cols=28 Identities=21% Similarity=0.274 Sum_probs=21.3
Q ss_pred CHHHHHHHHHHHHHHHhCCccccCCHHH
Q 024150 213 SAIEVANYIQRVLAGTLGFECTNLTRKD 240 (272)
Q Consensus 213 ~~~ela~~v~~~I~~~l~~~~~~~~~~d 240 (272)
+++++.+.+.+.+++.++.+..+++.++
T Consensus 2 ~~~~i~~~l~~~i~~~l~~~~~~i~~~~ 29 (80)
T 1x3o_A 2 TEQEIFEKVKAVIADKLQVEPEKVTLEA 29 (80)
T ss_dssp CHHHHHHHHHHHHHHHHTCCGGGCCTTC
T ss_pred CHHHHHHHHHHHHHHHhCCCHHHCCCcC
Confidence 5678889999999999987665555443
No 7
>1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent, NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET: NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB: 2aw5_A
Probab=7.65 E-value=1.3e+03 Score=21.79 Aligned_cols=98 Identities=9% Similarity=0.174 Sum_probs=59.9
Q ss_pred EEEEeCccccCC-CCccC-------chH-HHHh-cCCc---EEEEEEecC--------CCCccCCCCCCccccCCCCCHH
Q 024150 157 LVICPEGTTCRE-PFLLR-------FSA-LFAE-LTDR---IVPVAINTK--------QSVFHGTTLPPELTVKGGKSAI 215 (272)
Q Consensus 157 lvIFPEGTrs~~-~~l~~-------Fk~-~~a~-~~~p---IvPV~I~~~--------~~~~~g~~lp~~~~~~~~~~~~ 215 (272)
++|-=.||+--| |.+.. .|. .+.. .++. ++||.|+-. +++|.|-.-+-. .+++.+
T Consensus 135 v~VVTDG~~ILGLGD~G~~g~~ipvGKl~Ly~~~aGIdP~~~lPI~LD~GTnn~~LL~DplYlG~r~~Rv----~g~eyd 210 (555)
T 1gq2_A 135 AIVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVKPHQCLPVMLDVGTDNETLLKDPLYIGLRHKRI----RGQAYD 210 (555)
T ss_dssp EEEEECSSSCGGGCCCGGGGGHHHHHHHHHHHHTTCCCGGGEEEEEEESCCCCHHHHHCTTCCSCSSCCC----CTHHHH
T ss_pred EEEEEccccccccCCCCCCccccchhHHHHhHhccCCChhheeeeEeecCCCchhhcCCCccCCcCCCCC----chHHHH
Confidence 667778888665 43433 232 2222 3455 999999963 446666443332 467789
Q ss_pred HHHHHHHHHHHHHhC----CccccCCHHHHHHHhhCCCCCcCCCchh
Q 024150 216 EVANYIQRVLAGTLG----FECTNLTRKDKYSILAGTDGRVPSKKEK 258 (272)
Q Consensus 216 ela~~v~~~I~~~l~----~~~~~~~~~dk~~~~~~~~~~~~~~~~~ 258 (272)
+|.+++.+.+...+| +..-++....-.+.+.-....+++--||
T Consensus 211 ~fvdefv~av~~~fGp~~~I~~EDf~~~~af~il~ryr~~ipvFnDD 257 (555)
T 1gq2_A 211 DLLDEFMEAVTSRYGMNCLIQFEDFANANAFRLLHKYRNKYCTFNDD 257 (555)
T ss_dssp HHHHHHHHHHHHHHCTTCEEEECSCCHHHHHHHHHHHTTTSEEEETT
T ss_pred HHHHHHHHHHHHhhCCCcEEeecccCCccHHHHHHHHhccCCEecCc
Confidence 999999999998885 6667777765544433222234444333
No 8
>2qnw_A Acyl carrier protein; malaria, SGC, structural genomics CONS fatty acid biosynthesis, lipid synthesis, phosphopantethein transit peptide; 1.90A {Toxoplasma gondii}
Probab=7.41 E-value=2.5e+02 Score=18.46 Aligned_cols=29 Identities=14% Similarity=0.292 Sum_probs=22.3
Q ss_pred CCHHHHHHHHHHHHHHHhCCccccCCHHH
Q 024150 212 KSAIEVANYIQRVLAGTLGFECTNLTRKD 240 (272)
Q Consensus 212 ~~~~ela~~v~~~I~~~l~~~~~~~~~~d 240 (272)
.+++++.+++++.+++.++.+..+++.++
T Consensus 3 ~~~~~i~~~l~~ii~~~l~~~~~~i~~d~ 31 (82)
T 2qnw_A 3 SDDRPLLERVKDVVADQLGVDRARINPES 31 (82)
T ss_dssp CCSHHHHHHHHHHHHHHHCCCGGGCCTTC
T ss_pred CcHHHHHHHHHHHHHHHHCCCHhhCCCcc
Confidence 36678999999999999988766665443
No 9
>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} SCOP: d.160.1.2 PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A
Probab=7.34 E-value=2e+02 Score=23.70 Aligned_cols=18 Identities=33% Similarity=0.444 Sum_probs=12.7
Q ss_pred HHHHhCCc-EEEEeCcccc
Q 024150 149 KQLLEEGD-LVICPEGTTC 166 (272)
Q Consensus 149 ~~~L~~G~-lvIFPEGTrs 166 (272)
+++.++|. +++|||-..+
T Consensus 28 ~~A~~~gadlvvfPE~~~~ 46 (262)
T 3ivz_A 28 KEASKQGAQLVVLPELFDT 46 (262)
T ss_dssp HHHHHTTCSEEECCTTTTT
T ss_pred HHHHHCCCCEEEeCCCccc
Confidence 44555674 9999997654
No 10
>3ndq_A Transcription elongation factor A protein 1; helix bundle; 1.93A {Homo sapiens}
Probab=7.25 E-value=4.1e+02 Score=19.29 Aligned_cols=32 Identities=16% Similarity=0.255 Sum_probs=23.9
Q ss_pred CCCHHHHHHHHHHHHHHHhCCccccCCHHHHHHH
Q 024150 211 GKSAIEVANYIQRVLAGTLGFECTNLTRKDKYSI 244 (272)
Q Consensus 211 ~~~~~ela~~v~~~I~~~l~~~~~~~~~~dk~~~ 244 (272)
+.+...+|..|+++|.+.++. ++-.+++|++-
T Consensus 38 ~~~~~~lA~~IE~~if~~~~~--~~~~Yk~k~Rs 69 (108)
T 3ndq_A 38 GADEEELGSQIEEAIYQEIRN--TDMKYKNRVRS 69 (108)
T ss_dssp TCCHHHHHHHHHHHHHHHHCS--SSHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhcC--CcHHHHHHHHH
Confidence 357789999999999999873 33346777763
Done!