Query 024151
Match_columns 271
No_of_seqs 172 out of 1647
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 03:16:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024151.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024151hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1okc_A ADP, ATP carrier protei 100.0 3.4E-45 1.2E-49 316.0 14.6 231 3-261 6-240 (297)
2 2lck_A Mitochondrial uncouplin 100.0 6.2E-45 2.1E-49 315.3 12.6 224 6-261 3-233 (303)
3 2lck_A Mitochondrial uncouplin 100.0 2.1E-40 7.3E-45 286.8 14.0 193 3-228 103-296 (303)
4 1okc_A ADP, ATP carrier protei 100.0 1.3E-38 4.4E-43 274.8 15.7 185 4-218 112-297 (297)
5 3arc_X Photosystem II PSBX pro 34.7 56 0.0019 18.1 3.4 18 1-18 2-19 (39)
6 3tgu_G UQCRQ, mitochondrial ub 27.0 32 0.0011 22.6 1.9 39 185-223 32-71 (81)
7 2acm_A Mucin-1; auto-catalytic 23.6 15 0.00052 22.5 -0.2 20 45-64 40-59 (66)
8 3bz1_X Photosystem II PSBX pro 22.3 1.2E+02 0.0039 17.8 3.4 19 1-19 12-30 (50)
9 2a3d_A Protein (de novo three- 20.8 1.5E+02 0.005 17.8 3.7 16 131-146 10-25 (73)
10 2czy_A Paired amphipathic heli 18.3 46 0.0016 21.5 1.3 26 25-55 11-36 (77)
No 1
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=3.4e-45 Score=315.99 Aligned_cols=231 Identities=14% Similarity=0.155 Sum_probs=191.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCcccc---cccccCcHHHHHHHHHHhhchhhhccchhHHHHHHhhhHH
Q 024151 3 DALINGLAGAGGGIIAQLITYPLQTVNARQQTERDVK---KEKRKLGTVAQMCQVVKHEGWGRLYGGLTPSIVGTAASQG 79 (271)
Q Consensus 3 ~~~~~~~ag~~ag~~~~~i~~Pld~vk~r~Q~~~~~~---~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~~~~~~~~~ 79 (271)
+.+.++++|++||+++.+++||+|+||+|+|++.... ....|+++++++++|+++||++|||||+.+++++.++..+
T Consensus 6 ~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 85 (297)
T 1okc_A 6 SFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQA 85 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHHH
Confidence 3567899999999999999999999999999986421 2347899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCCCCcchHHHHHHHHHHHHHHHHhcccHHHHHHhHhcccccccCCCCCCcccccc
Q 024151 80 VYYYFYQIFRNNAEVAALEHKKRGIGDGSVGMLSSLVVAALAGCVNVLLTNPIWVVVTRMQTHTKTLKKSKPCRSELTSS 159 (271)
Q Consensus 80 ~~f~~y~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~i~~P~d~vk~r~q~~~~~~~~~~~~~~~~~~~ 159 (271)
++|.+||.+|+.+...... ..+........+++|++||++++++++|+|+||+|+|++....
T Consensus 86 ~~f~~ye~~k~~~~~~~~~-----~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~------------- 147 (297)
T 1okc_A 86 LNFAFKDKYKQIFLGGVDR-----HKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKG------------- 147 (297)
T ss_dssp HHHHHHHHHHHHHHTTCCT-----TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSS-------------
T ss_pred HHHHHHHHHHHHhccccCc-----ccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCC-------------
Confidence 9999999999854322100 0011123467899999999999999999999999999984311
Q ss_pred ccCCCCCCCCCCCCHHHHHHHHHHhhChHHhhhhhhhchhc-cccchhhHHHHHHHHHHHHHHHhhcccCCCCCchhHHH
Q 024151 160 EKSSHATVEPPPFATSHAIQEVYDEAGLWGFWRGVFPTLIM-VSNPSIQFMLYETMLKKIKERRALRKKDNSGVTALEVT 238 (271)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~lr-~~~~~i~~~~ye~~k~~~~~~~~~~~~~~~~~~~~~~~ 238 (271)
.....|.++++++++|+++||++|||||+.++++| +|.++++|.+||.+|+++.+.. +.......+++.
T Consensus 148 ------~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~----~~~~~~~~~~g~ 217 (297)
T 1okc_A 148 ------AAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPK----NVHIIVSWMIAQ 217 (297)
T ss_dssp ------TTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGGG----CSCHHHHHHHHH
T ss_pred ------CcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccCC----CccHHHHHHHHH
Confidence 12356889999999999999999999999999999 8999999999999999774321 111112467788
Q ss_pred HHHhhcCCCCCchhhHHhhhccc
Q 024151 239 FWFCFLSPPFFNPSILNSVLGAP 261 (271)
Q Consensus 239 ~~g~~a~~~~~p~d~v~t~l~~p 261 (271)
++|++++.+++|+|+||||+|..
T Consensus 218 ~ag~~a~~~t~P~dvvktr~q~~ 240 (297)
T 1okc_A 218 TVTAVAGLVSYPFDTVRRRMMMQ 240 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcChHHHHHHHHhhc
Confidence 88999999999999999999864
No 2
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=6.2e-45 Score=315.26 Aligned_cols=224 Identities=18% Similarity=0.252 Sum_probs=192.6
Q ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHhcCccccc------ccccCcHHHHHHHHHHhhchhhhccchhHHHHHHhhhHH
Q 024151 6 INGLAGAGGGIIAQLITYPLQTVNARQQTERDVKK------EKRKLGTVAQMCQVVKHEGWGRLYGGLTPSIVGTAASQG 79 (271)
Q Consensus 6 ~~~~ag~~ag~~~~~i~~Pld~vk~r~Q~~~~~~~------~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~~~~~~~~~ 79 (271)
.++++|++||+++.+++||+|+||+|+|++..... ...|++.++++++|+++||++|||||+.+++++.++..+
T Consensus 3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 82 (303)
T 2lck_A 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFAS 82 (303)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHH
Confidence 36899999999999999999999999999865321 246899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCCCCcchHHHHHHHHHHHHHHHHhcccHHHHHHhHhcccccccCCCCCCcccccc
Q 024151 80 VYYYFYQIFRNNAEVAALEHKKRGIGDGSVGMLSSLVVAALAGCVNVLLTNPIWVVVTRMQTHTKTLKKSKPCRSELTSS 159 (271)
Q Consensus 80 ~~f~~y~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~i~~P~d~vk~r~q~~~~~~~~~~~~~~~~~~~ 159 (271)
++|.+||.+|+.+.+.. ...+....+++|++||+++.++++|+|+||+|+|++...
T Consensus 83 i~f~~ye~~k~~~~~~~----------~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~-------------- 138 (303)
T 2lck_A 83 VRIGLYDSVKQFYTKGS----------EHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARA-------------- 138 (303)
T ss_dssp HTTTHHHHHHHHHSCCC----------SSCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSC--------------
T ss_pred HHHHHHHHHHHHHhcCC----------cCCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhccccc--------------
Confidence 99999999998875321 124678899999999999999999999999999998531
Q ss_pred ccCCCCCCCCCCCCHHHHHHHHHHhhChHHhhhhhhhchhc-cccchhhHHHHHHHHHHHHHHHhhcccCCCCCchhHHH
Q 024151 160 EKSSHATVEPPPFATSHAIQEVYDEAGLWGFWRGVFPTLIM-VSNPSIQFMLYETMLKKIKERRALRKKDNSGVTALEVT 238 (271)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~lr-~~~~~i~~~~ye~~k~~~~~~~~~~~~~~~~~~~~~~~ 238 (271)
.....|.+.++++++|+++||++|||||+.++++| +|.++++|.+||.+|+++.+.... ........+++.
T Consensus 139 ------~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~~--~~~~~~~~~~g~ 210 (303)
T 2lck_A 139 ------GGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLM--TDDLPCHFTSAF 210 (303)
T ss_dssp ------CCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSC--CSCHHHHHHHHH
T ss_pred ------CCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--CCchHHHHHHHH
Confidence 12347889999999999999999999999999999 899999999999999988653311 111113568888
Q ss_pred HHHhhcCCCCCchhhHHhhhccc
Q 024151 239 FWFCFLSPPFFNPSILNSVLGAP 261 (271)
Q Consensus 239 ~~g~~a~~~~~p~d~v~t~l~~p 261 (271)
++|++++.+++|+|+||||+|..
T Consensus 211 ~ag~~~~~~~~P~dvvktrlq~~ 233 (303)
T 2lck_A 211 GAGFCTTVIASPVDVVKTRYMNS 233 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCHHHHHHHHHHhc
Confidence 99999999999999999999964
No 3
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=2.1e-40 Score=286.78 Aligned_cols=193 Identities=20% Similarity=0.272 Sum_probs=169.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCcccccccccCcHHHHHHHHHHhhchhhhccchhHHHHHHhhhHHHHH
Q 024151 3 DALINGLAGAGGGIIAQLITYPLQTVNARQQTERDVKKEKRKLGTVAQMCQVVKHEGWGRLYGGLTPSIVGTAASQGVYY 82 (271)
Q Consensus 3 ~~~~~~~ag~~ag~~~~~i~~Pld~vk~r~Q~~~~~~~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~~~~~~~~~~~f 82 (271)
+.+.++++|++||+++.++++|+|+||+|+|++........|++.++++++|+++||++|||||+.+++++.++..+++|
T Consensus 103 ~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f 182 (303)
T 2lck_A 103 GIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAEL 182 (303)
T ss_dssp CHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHH
Confidence 35678999999999999999999999999999865333357899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCCCcchHHHHHHHHHHHHHHHHhcccHHHHHHhHhcccccccCCCCCCccccccccC
Q 024151 83 YFYQIFRNNAEVAALEHKKRGIGDGSVGMLSSLVVAALAGCVNVLLTNPIWVVVTRMQTHTKTLKKSKPCRSELTSSEKS 162 (271)
Q Consensus 83 ~~y~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~i~~P~d~vk~r~q~~~~~~~~~~~~~~~~~~~~~~ 162 (271)
.+||.+|+.+.+.. ....+....+++|++||++++++++|+|+||+|||.+..
T Consensus 183 ~~ye~~k~~l~~~~---------~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~------------------ 235 (303)
T 2lck_A 183 VTYDLIKDTLLKAN---------LMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSAL------------------ 235 (303)
T ss_dssp HHHHHHHHTTTTTT---------SCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS------------------
T ss_pred HHHHHHHHHHHhcc---------CCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccc------------------
Confidence 99999998775431 123356788999999999999999999999999999843
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhChHHhhhhhhhchhc-cccchhhHHHHHHHHHHHHHHHhhcccC
Q 024151 163 SHATVEPPPFATSHAIQEVYDEAGLWGFWRGVFPTLIM-VSNPSIQFMLYETMLKKIKERRALRKKD 228 (271)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~lr-~~~~~i~~~~ye~~k~~~~~~~~~~~~~ 228 (271)
..|.++++|+++|+++||++|||||+.++++| +|.++++|.+||.+|+++.+....++++
T Consensus 236 ------~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~~~~~~~~~~ 296 (303)
T 2lck_A 236 ------GQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAAYQSREAP 296 (303)
T ss_dssp ------SSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHCC
T ss_pred ------cccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCC
Confidence 35889999999999999999999999999999 8999999999999999886655544433
No 4
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=1.3e-38 Score=274.83 Aligned_cols=185 Identities=18% Similarity=0.274 Sum_probs=158.5
Q ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCcccc-cccccCcHHHHHHHHHHhhchhhhccchhHHHHHHhhhHHHHH
Q 024151 4 ALINGLAGAGGGIIAQLITYPLQTVNARQQTERDVK-KEKRKLGTVAQMCQVVKHEGWGRLYGGLTPSIVGTAASQGVYY 82 (271)
Q Consensus 4 ~~~~~~ag~~ag~~~~~i~~Pld~vk~r~Q~~~~~~-~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~~~~~~~~~~~f 82 (271)
.+.++++|++||+++.++++|+|+||+|+|++.... ....|+++++++++|+++||++|||||+.+++++.++..+++|
T Consensus 112 ~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f 191 (297)
T 1okc_A 112 FAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYF 191 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHH
Confidence 356899999999999999999999999999985322 2347899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCCCcchHHHHHHHHHHHHHHHHhcccHHHHHHhHhcccccccCCCCCCccccccccC
Q 024151 83 YFYQIFRNNAEVAALEHKKRGIGDGSVGMLSSLVVAALAGCVNVLLTNPIWVVVTRMQTHTKTLKKSKPCRSELTSSEKS 162 (271)
Q Consensus 83 ~~y~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~i~~P~d~vk~r~q~~~~~~~~~~~~~~~~~~~~~~ 162 (271)
.+||.+|+.+.+. ...+....+++|++||++++++++|+|+||+|||.+....
T Consensus 192 ~~ye~~k~~~~~~-----------~~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~~~~---------------- 244 (297)
T 1okc_A 192 GVYDTAKGMLPDP-----------KNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRK---------------- 244 (297)
T ss_dssp HHHHHHHHSSCGG-----------GCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCC----------------
T ss_pred HHHHHHHHHhccC-----------CCccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCC----------------
Confidence 9999999866432 1235677899999999999999999999999999974311
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhChHHhhhhhhhchhccccchhhHHHHHHHHHHH
Q 024151 163 SHATVEPPPFATSHAIQEVYDEAGLWGFWRGVFPTLIMVSNPSIQFMLYETMLKKI 218 (271)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~lr~~~~~i~~~~ye~~k~~~ 218 (271)
.....|.++++|+++|+++||++|||||+.++++|.+.++++|.+||.+|+++
T Consensus 245 ---~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 245 ---GADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGGAFVLVLYDEIKKFV 297 (297)
T ss_dssp ---GGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHHHHHHHHHHHHHTC----
T ss_pred ---CCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhhccceeeehHHHHHHhhC
Confidence 11247889999999999999999999999999999667899999999998763
No 5
>3arc_X Photosystem II PSBX protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3prq_X* 3prr_X* 3kzi_X* 3a0b_X* 3a0h_X*
Probab=34.68 E-value=56 Score=18.14 Aligned_cols=18 Identities=17% Similarity=0.244 Sum_probs=15.5
Q ss_pred CChHHHHHHHHHHHHHHH
Q 024151 1 MSDALINGLAGAGGGIIA 18 (271)
Q Consensus 1 ~~~~~~~~~ag~~ag~~~ 18 (271)
|.+.+.+|+.+.++|.+-
T Consensus 2 mTpSL~nFl~Sl~aG~vv 19 (39)
T 3arc_X 2 ITPSLKGFFIGLLSGAVV 19 (39)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred cChhHHHHHHHHHHHHHH
Confidence 678899999999998874
No 6
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=27.02 E-value=32 Score=22.59 Aligned_cols=39 Identities=13% Similarity=0.194 Sum_probs=30.1
Q ss_pred hChHHhhhhhhhchhc-cccchhhHHHHHHHHHHHHHHHh
Q 024151 185 AGLWGFWRGVFPTLIM-VSNPSIQFMLYETMLKKIKERRA 223 (271)
Q Consensus 185 ~G~~glyrG~~~~~lr-~~~~~i~~~~ye~~k~~~~~~~~ 223 (271)
.|+-..+|-+..+++. +|...+.+.+|++.++.......
T Consensus 32 ~~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l~r 71 (81)
T 3tgu_G 32 DALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFERLKR 71 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred hhhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHhC
Confidence 4566666667777888 78889999999999988766554
No 7
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=23.62 E-value=15 Score=22.46 Aligned_cols=20 Identities=20% Similarity=0.179 Sum_probs=17.4
Q ss_pred CcHHHHHHHHHHhhchhhhc
Q 024151 45 LGTVAQMCQVVKHEGWGRLY 64 (271)
Q Consensus 45 ~~~~~~~~~i~~~~G~~gly 64 (271)
+++.+.+.+||+++++.||+
T Consensus 40 r~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 40 RDISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHHccCCeeeee
Confidence 56788999999999999886
No 8
>3bz1_X Photosystem II PSBX protein; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_X* 3bz2_X*
Probab=22.31 E-value=1.2e+02 Score=17.84 Aligned_cols=19 Identities=16% Similarity=0.204 Sum_probs=15.6
Q ss_pred CChHHHHHHHHHHHHHHHH
Q 024151 1 MSDALINGLAGAGGGIIAQ 19 (271)
Q Consensus 1 ~~~~~~~~~ag~~ag~~~~ 19 (271)
|.+.+.+|+.+.++|.+-.
T Consensus 12 mTpSL~NFl~SlvaG~vVv 30 (50)
T 3bz1_X 12 ITPSLKGFFIGLLSGAVVL 30 (50)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHH
Confidence 6788999999999988743
No 9
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=20.82 E-value=1.5e+02 Score=17.82 Aligned_cols=16 Identities=19% Similarity=0.162 Sum_probs=11.8
Q ss_pred cHHHHHHhHhcccccc
Q 024151 131 PIWVVVTRMQTHTKTL 146 (271)
Q Consensus 131 P~d~vk~r~q~~~~~~ 146 (271)
-+..||+|+|.-+...
T Consensus 10 rlaaiktrlqalggse 25 (73)
T 2a3d_A 10 RLAAIKTRLQALGGSE 25 (73)
T ss_dssp HHHHHHHHHHHCSSGG
T ss_pred HHHHHHHHHHHhcCcH
Confidence 3567899999986543
No 10
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus}
Probab=18.28 E-value=46 Score=21.46 Aligned_cols=26 Identities=19% Similarity=0.169 Sum_probs=18.5
Q ss_pred HHHHHHHHhcCcccccccccCcHHHHHHHHH
Q 024151 25 LQTVNARQQTERDVKKEKRKLGTVAQMCQVV 55 (271)
Q Consensus 25 ld~vk~r~Q~~~~~~~~~~~~~~~~~~~~i~ 55 (271)
++.||.|.|-+.. .|..+.+.++...
T Consensus 11 l~~VK~~F~~~p~-----~Y~~FL~im~~~k 36 (77)
T 2czy_A 11 LDQVKIRFGSDPA-----TYNGFLEIMKEFK 36 (77)
T ss_dssp HHHHHHHTTTCHH-----HHHHHHHHHHHHH
T ss_pred HHHHHHHHccChH-----HHHHHHHHHHHHH
Confidence 6789999987643 6777777766543
Done!