Query 024152
Match_columns 271
No_of_seqs 315 out of 2476
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 02:28:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024152.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024152hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0305 DnaB Replicative DNA h 100.0 1.4E-38 3.1E-43 291.0 11.7 239 2-270 99-377 (435)
2 PRK08006 replicative DNA helic 100.0 4.8E-35 1E-39 274.6 14.1 241 2-270 123-407 (471)
3 PRK08760 replicative DNA helic 100.0 5E-35 1.1E-39 275.2 14.0 240 2-270 129-410 (476)
4 PRK08840 replicative DNA helic 100.0 9.9E-35 2.1E-39 272.0 14.3 241 2-270 116-400 (464)
5 PRK05636 replicative DNA helic 100.0 1.5E-34 3.2E-39 273.0 13.7 238 2-267 166-444 (505)
6 PRK06904 replicative DNA helic 100.0 2.1E-34 4.6E-39 270.5 14.5 242 2-270 119-405 (472)
7 PRK07004 replicative DNA helic 100.0 1.4E-34 3E-39 271.3 12.9 242 2-270 111-395 (460)
8 PRK06321 replicative DNA helic 100.0 3.7E-34 8E-39 268.5 15.0 247 2-270 112-410 (472)
9 PRK09165 replicative DNA helic 100.0 4.4E-34 9.4E-39 270.3 14.4 240 2-267 117-412 (497)
10 PRK05595 replicative DNA helic 100.0 1E-33 2.2E-38 265.3 14.9 239 2-270 104-382 (444)
11 TIGR03600 phage_DnaB phage rep 100.0 1.5E-33 3.3E-38 262.8 15.2 239 2-270 94-375 (421)
12 PRK08506 replicative DNA helic 100.0 1.1E-33 2.3E-38 266.3 13.5 238 2-267 94-371 (472)
13 PRK05748 replicative DNA helic 100.0 1.4E-32 3E-37 258.1 14.8 238 2-267 106-384 (448)
14 PRK07773 replicative DNA helic 100.0 6.3E-33 1.4E-37 278.4 13.2 239 2-270 120-398 (886)
15 PRK06749 replicative DNA helic 100.0 4.8E-32 1E-36 252.0 13.5 232 2-267 95-369 (428)
16 PHA02542 41 41 helicase; Provi 100.0 2.3E-31 5E-36 249.5 13.4 238 2-267 91-371 (473)
17 TIGR00665 DnaB replicative DNA 100.0 4.7E-31 1E-35 247.0 15.1 237 2-267 98-374 (434)
18 TIGR02012 tigrfam_recA protein 100.0 6.4E-30 1.4E-34 227.9 20.7 193 66-259 3-195 (321)
19 cd00983 recA RecA is a bacter 100.0 9.1E-30 2E-34 227.1 20.9 193 66-259 3-195 (325)
20 PRK09354 recA recombinase A; P 100.0 8.8E-30 1.9E-34 228.7 20.8 195 64-259 6-200 (349)
21 PF00154 RecA: recA bacterial 100.0 1.7E-28 3.7E-33 218.2 17.2 192 68-259 2-193 (322)
22 PRK09519 recA DNA recombinatio 99.9 5E-26 1.1E-30 221.6 21.2 195 64-259 6-200 (790)
23 PLN03186 DNA repair protein RA 99.9 3E-25 6.4E-30 200.3 15.2 171 96-271 101-298 (342)
24 COG0468 RecA RecA/RadA recombi 99.9 2.2E-24 4.7E-29 188.6 17.8 191 66-261 8-201 (279)
25 TIGR02238 recomb_DMC1 meiotic 99.9 4.1E-24 8.8E-29 191.3 18.4 171 96-271 74-271 (313)
26 PLN03187 meiotic recombination 99.9 4.7E-24 1E-28 192.3 18.0 171 96-271 104-300 (344)
27 TIGR02239 recomb_RAD51 DNA rep 99.9 2.6E-24 5.7E-29 192.9 14.4 171 96-271 74-272 (316)
28 cd01393 recA_like RecA is a b 99.9 1.8E-23 3.9E-28 179.1 16.2 167 100-271 1-191 (226)
29 PF08423 Rad51: Rad51; InterP 99.9 7.2E-24 1.6E-28 185.1 13.3 171 96-271 16-213 (256)
30 PTZ00035 Rad51 protein; Provis 99.9 4E-23 8.6E-28 186.8 17.5 171 96-271 96-293 (337)
31 PF03796 DnaB_C: DnaB-like hel 99.9 1.2E-23 2.5E-28 184.3 11.8 158 99-267 1-199 (259)
32 cd01394 radB RadB. The archaea 99.9 1.9E-22 4E-27 172.1 16.3 154 100-258 1-160 (218)
33 PRK09361 radB DNA repair and r 99.9 7.9E-22 1.7E-26 169.1 16.2 153 99-258 4-164 (225)
34 cd01123 Rad51_DMC1_radA Rad51_ 99.9 8.3E-22 1.8E-26 169.8 14.7 166 100-270 1-194 (235)
35 TIGR02236 recomb_radA DNA repa 99.9 1.5E-21 3.2E-26 175.3 16.9 171 96-271 73-269 (310)
36 cd01121 Sms Sms (bacterial rad 99.9 2.2E-21 4.8E-26 177.2 16.9 152 96-259 60-213 (372)
37 TIGR00416 sms DNA repair prote 99.9 1.8E-21 3.8E-26 182.4 16.3 151 96-258 72-224 (454)
38 PRK04301 radA DNA repair and r 99.9 4.9E-21 1.1E-25 172.4 17.2 171 96-271 80-275 (317)
39 COG1066 Sms Predicted ATP-depe 99.9 2.9E-21 6.3E-26 173.5 15.5 150 96-258 71-222 (456)
40 TIGR03878 thermo_KaiC_2 KaiC d 99.9 7.2E-21 1.6E-25 166.6 14.9 144 99-257 3-177 (259)
41 PRK11823 DNA repair protein Ra 99.9 1.2E-20 2.6E-25 176.7 17.0 151 96-258 58-210 (446)
42 PRK05973 replicative DNA helic 99.9 9.5E-21 2.1E-25 162.6 13.2 171 69-266 25-211 (237)
43 TIGR03877 thermo_KaiC_1 KaiC d 99.8 1.5E-20 3.2E-25 162.7 14.0 144 99-257 2-172 (237)
44 cd01122 GP4d_helicase GP4d_hel 99.8 2.9E-20 6.2E-25 163.7 13.7 152 97-258 10-193 (271)
45 TIGR02237 recomb_radB DNA repa 99.8 1.4E-19 3E-24 153.4 15.2 144 107-258 1-152 (209)
46 TIGR03881 KaiC_arch_4 KaiC dom 99.8 1.6E-19 3.6E-24 155.1 15.8 143 100-257 2-167 (229)
47 PRK04328 hypothetical protein; 99.8 1E-19 2.2E-24 158.5 13.9 145 98-257 3-174 (249)
48 KOG1434 Meiotic recombination 99.8 7.6E-21 1.7E-25 160.6 5.3 172 95-271 92-291 (335)
49 cd00984 DnaB_C DnaB helicase C 99.8 3.3E-19 7.1E-24 154.3 13.6 141 106-257 2-174 (242)
50 PF06745 KaiC: KaiC; InterPro 99.8 8.4E-19 1.8E-23 150.5 11.3 142 100-255 1-160 (226)
51 TIGR02655 circ_KaiC circadian 99.8 6.7E-18 1.4E-22 160.1 14.1 146 97-256 242-399 (484)
52 PRK06067 flagellar accessory p 99.8 1.6E-17 3.6E-22 143.2 14.7 146 96-256 3-165 (234)
53 PRK09302 circadian clock prote 99.8 1.1E-17 2.4E-22 159.8 14.4 149 96-257 9-178 (509)
54 TIGR03880 KaiC_arch_3 KaiC dom 99.7 4.2E-17 9.1E-22 139.8 14.8 142 103-257 1-155 (224)
55 TIGR02655 circ_KaiC circadian 99.7 4.5E-17 9.7E-22 154.5 13.6 146 99-257 2-168 (484)
56 PRK09302 circadian clock prote 99.7 7E-17 1.5E-21 154.3 14.7 148 96-257 251-410 (509)
57 KOG1564 DNA repair protein RHP 99.7 4.4E-17 9.5E-22 139.8 10.4 157 98-258 82-265 (351)
58 COG3842 PotA ABC-type spermidi 99.7 1.6E-17 3.4E-22 149.5 4.5 146 105-256 19-197 (352)
59 COG0467 RAD55 RecA-superfamily 99.7 1.2E-15 2.7E-20 133.6 13.5 147 97-256 2-171 (260)
60 COG1125 OpuBA ABC-type proline 99.7 1.4E-16 3.1E-21 135.4 6.3 146 106-257 16-197 (309)
61 COG1136 SalX ABC-type antimicr 99.7 3.4E-16 7.3E-21 132.8 8.4 148 104-256 18-203 (226)
62 COG2884 FtsE Predicted ATPase 99.6 1.5E-15 3.2E-20 124.1 9.5 150 102-257 13-198 (223)
63 COG1126 GlnQ ABC-type polar am 99.6 3.6E-16 7.7E-21 130.2 6.0 137 115-256 24-196 (240)
64 PF13481 AAA_25: AAA domain; P 99.6 4.5E-16 9.7E-21 130.0 5.7 151 96-258 10-191 (193)
65 COG1118 CysA ABC-type sulfate/ 99.6 1.2E-15 2.7E-20 132.9 6.7 147 104-256 15-198 (345)
66 COG3839 MalK ABC-type sugar tr 99.6 2E-15 4.4E-20 135.2 7.5 139 115-257 25-195 (338)
67 COG1135 AbcC ABC-type metal io 99.6 5.7E-15 1.2E-19 129.0 8.0 150 103-257 18-203 (339)
68 PRK08533 flagellar accessory p 99.6 2.7E-14 5.8E-19 123.0 12.0 145 98-256 4-163 (230)
69 COG1116 TauB ABC-type nitrate/ 99.5 4E-15 8.6E-20 126.8 4.6 137 115-257 25-192 (248)
70 COG1120 FepC ABC-type cobalami 99.5 4.6E-15 1E-19 128.3 4.2 138 115-256 24-199 (258)
71 COG1121 ZnuC ABC-type Mn/Zn tr 99.5 2.5E-14 5.3E-19 123.3 6.7 138 115-257 26-200 (254)
72 COG1131 CcmA ABC-type multidru 99.5 4.5E-14 9.7E-19 125.8 8.2 149 106-258 20-199 (293)
73 COG0410 LivF ABC-type branched 99.5 9.1E-14 2E-18 117.0 8.8 143 115-257 25-198 (237)
74 COG1127 Ttg2A ABC-type transpo 99.5 5.1E-14 1.1E-18 119.1 7.1 140 115-257 30-207 (263)
75 COG3840 ThiQ ABC-type thiamine 99.5 6.2E-14 1.3E-18 114.0 7.2 141 115-258 21-192 (231)
76 PRK11650 ugpC glycerol-3-phosp 99.5 7.8E-14 1.7E-18 127.4 6.8 139 115-257 26-196 (356)
77 COG2874 FlaH Predicted ATPases 99.5 1.4E-12 3E-17 108.6 12.7 144 99-257 9-169 (235)
78 COG4604 CeuD ABC-type enteroch 99.4 7.8E-14 1.7E-18 114.7 5.0 137 115-254 23-194 (252)
79 TIGR03265 PhnT2 putative 2-ami 99.4 1.6E-13 3.4E-18 125.3 7.3 139 115-257 26-196 (353)
80 KOG1433 DNA repair protein RAD 99.4 9.9E-13 2.1E-17 117.2 11.7 158 96-258 89-257 (326)
81 PRK09452 potA putrescine/sperm 99.4 2E-13 4.3E-18 125.5 7.0 139 115-257 36-206 (375)
82 PRK11432 fbpC ferric transport 99.4 2.2E-13 4.8E-18 124.2 7.2 139 115-257 28-198 (351)
83 COG3638 ABC-type phosphate/pho 99.4 2.8E-13 6E-18 114.4 6.7 149 103-257 16-209 (258)
84 COG4148 ModC ABC-type molybdat 99.4 2E-13 4.4E-18 117.7 5.4 140 116-258 21-191 (352)
85 TIGR02314 ABC_MetN D-methionin 99.4 4.8E-13 1E-17 121.5 8.1 139 115-257 27-202 (343)
86 PRK11607 potG putrescine trans 99.4 3.6E-13 7.8E-18 123.9 7.1 139 115-257 41-211 (377)
87 TIGR03258 PhnT 2-aminoethylpho 99.4 4.7E-13 1E-17 122.5 7.5 140 115-258 27-201 (362)
88 COG4555 NatA ABC-type Na+ tran 99.4 1.4E-12 3E-17 107.7 9.4 148 105-258 16-195 (245)
89 COG4152 ABC-type uncharacteriz 99.4 6.5E-13 1.4E-17 112.6 7.5 124 115-258 24-192 (300)
90 PRK10851 sulfate/thiosulfate t 99.4 4.8E-13 1E-17 122.1 6.7 139 115-257 24-198 (353)
91 COG3845 ABC-type uncharacteriz 99.4 6.8E-13 1.5E-17 122.2 7.2 82 103-186 16-100 (501)
92 TIGR01186 proV glycine betaine 99.4 9.4E-13 2E-17 120.4 7.2 139 115-257 15-191 (363)
93 PRK11000 maltose/maltodextrin 99.4 8.9E-13 1.9E-17 121.1 7.1 139 115-257 25-195 (369)
94 cd03261 ABC_Org_Solvent_Resist 99.4 4E-12 8.6E-17 109.6 9.9 140 115-257 22-198 (235)
95 cd01120 RecA-like_NTPases RecA 99.3 1.7E-11 3.7E-16 98.4 12.7 132 121-259 1-140 (165)
96 cd01124 KaiC KaiC is a circadi 99.3 8.4E-12 1.8E-16 103.4 11.2 124 121-258 1-142 (187)
97 COG1124 DppF ABC-type dipeptid 99.3 2.1E-12 4.6E-17 109.6 7.4 148 105-257 21-203 (252)
98 COG1137 YhbG ABC-type (unclass 99.3 4.6E-13 9.9E-18 110.4 3.1 142 115-256 26-199 (243)
99 cd03256 ABC_PhnC_transporter A 99.3 5E-12 1.1E-16 109.3 9.8 140 115-257 23-206 (241)
100 TIGR01188 drrA daunorubicin re 99.3 5.4E-12 1.2E-16 113.0 10.2 139 115-257 15-185 (302)
101 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.3 4.6E-12 9.9E-17 107.9 9.3 141 115-258 26-203 (218)
102 COG4181 Predicted ABC-type tra 99.3 4.4E-12 9.4E-17 102.4 8.5 139 115-256 32-207 (228)
103 PRK11144 modC molybdate transp 99.3 1.9E-12 4E-17 118.4 6.9 139 115-257 20-190 (352)
104 cd03259 ABC_Carb_Solutes_like 99.3 4.6E-12 1E-16 107.6 8.7 139 115-257 22-192 (213)
105 PRK13537 nodulation ABC transp 99.3 2.7E-12 6E-17 115.1 7.5 139 115-257 29-199 (306)
106 cd03265 ABC_DrrA DrrA is the A 99.3 5.2E-12 1.1E-16 107.8 8.9 140 115-257 22-193 (220)
107 COG0411 LivG ABC-type branched 99.3 3E-13 6.5E-18 114.8 1.0 85 103-189 16-103 (250)
108 cd03296 ABC_CysA_sulfate_impor 99.3 4.3E-12 9.3E-17 109.8 8.1 140 115-257 24-198 (239)
109 cd03298 ABC_ThiQ_thiamine_tran 99.3 5.2E-12 1.1E-16 107.1 8.4 139 115-257 20-190 (211)
110 TIGR00960 3a0501s02 Type II (G 99.3 3.6E-12 7.8E-17 108.5 7.5 138 115-257 25-199 (216)
111 TIGR02315 ABC_phnC phosphonate 99.3 7.7E-12 1.7E-16 108.3 9.6 140 115-257 24-207 (243)
112 cd03268 ABC_BcrA_bacitracin_re 99.3 4.8E-12 1E-16 107.1 8.0 138 115-257 22-187 (208)
113 COG1129 MglA ABC-type sugar tr 99.3 3.5E-12 7.5E-17 119.3 7.5 81 103-186 20-104 (500)
114 COG4175 ProV ABC-type proline/ 99.3 4.4E-12 9.4E-17 111.2 7.5 152 97-257 37-226 (386)
115 PRK11153 metN DL-methionine tr 99.3 4E-12 8.6E-17 115.8 7.7 140 115-257 27-202 (343)
116 cd03301 ABC_MalK_N The N-termi 99.3 4.9E-12 1.1E-16 107.4 7.7 140 115-257 22-192 (213)
117 COG1117 PstB ABC-type phosphat 99.3 1.4E-11 2.9E-16 102.8 10.0 146 106-256 22-208 (253)
118 TIGR01277 thiQ thiamine ABC tr 99.3 4.2E-12 9.1E-17 107.9 7.1 139 115-257 20-190 (213)
119 cd03230 ABC_DR_subfamily_A Thi 99.3 1.7E-11 3.7E-16 100.9 10.4 124 115-257 22-156 (173)
120 TIGR02211 LolD_lipo_ex lipopro 99.3 9.9E-12 2.1E-16 106.1 9.1 139 115-257 27-203 (221)
121 cd03229 ABC_Class3 This class 99.3 1.1E-11 2.5E-16 102.4 9.2 125 115-257 22-162 (178)
122 cd03213 ABCG_EPDR ABCG transpo 99.3 1.5E-11 3.2E-16 103.2 9.8 122 115-256 31-171 (194)
123 cd03258 ABC_MetN_methionine_tr 99.3 1.7E-11 3.8E-16 105.5 10.4 139 115-257 27-202 (233)
124 cd03266 ABC_NatA_sodium_export 99.3 8.5E-12 1.8E-16 106.3 8.3 139 115-257 27-197 (218)
125 cd03293 ABC_NrtD_SsuB_transpor 99.3 4.2E-12 9.2E-17 108.4 6.3 137 115-257 26-193 (220)
126 PRK13536 nodulation factor exp 99.3 7.6E-12 1.7E-16 113.7 8.3 139 115-257 63-233 (340)
127 PRK10070 glycine betaine trans 99.3 5.5E-12 1.2E-16 116.7 7.4 146 103-257 43-226 (400)
128 TIGR02142 modC_ABC molybdenum 99.3 9.9E-12 2.2E-16 113.7 8.8 139 115-257 19-193 (354)
129 COG1123 ATPase components of v 99.3 1.3E-11 2.9E-16 116.2 9.8 149 104-257 304-491 (539)
130 TIGR01288 nodI ATP-binding ABC 99.3 1E-11 2.2E-16 111.3 8.3 139 115-257 26-196 (303)
131 PRK11629 lolD lipoprotein tran 99.3 1.8E-11 4E-16 105.4 9.5 140 115-258 31-208 (233)
132 cd03225 ABC_cobalt_CbiO_domain 99.3 1.4E-11 3E-16 104.4 8.4 139 115-257 23-195 (211)
133 cd03246 ABCC_Protease_Secretio 99.3 4.7E-11 1E-15 98.2 11.3 122 115-257 24-157 (173)
134 cd03295 ABC_OpuCA_Osmoprotecti 99.3 2.5E-11 5.4E-16 105.2 10.0 139 115-257 23-197 (242)
135 PRK11247 ssuB aliphatic sulfon 99.3 1.8E-11 4E-16 107.1 9.2 137 115-257 34-195 (257)
136 PRK10584 putative ABC transpor 99.3 1.8E-11 3.8E-16 105.1 8.9 139 115-257 32-208 (228)
137 COG4107 PhnK ABC-type phosphon 99.3 2.4E-11 5.3E-16 98.4 9.1 154 73-256 9-212 (258)
138 PRK13540 cytochrome c biogenes 99.3 4.6E-11 9.9E-16 100.6 11.2 141 115-260 23-191 (200)
139 cd03226 ABC_cobalt_CbiO_domain 99.3 2.4E-11 5.3E-16 102.6 9.5 138 115-257 22-187 (205)
140 TIGR03415 ABC_choXWV_ATP choli 99.3 5.3E-12 1.1E-16 116.1 5.8 139 115-257 46-226 (382)
141 cd03237 ABC_RNaseL_inhibitor_d 99.3 1.4E-11 3E-16 107.2 8.0 131 114-257 20-177 (246)
142 cd03269 ABC_putative_ATPase Th 99.3 2E-11 4.3E-16 103.5 8.8 73 115-189 22-94 (210)
143 PRK09536 btuD corrinoid ABC tr 99.3 1.1E-11 2.3E-16 114.9 7.5 138 115-256 25-199 (402)
144 TIGR03410 urea_trans_UrtE urea 99.3 1.2E-11 2.5E-16 106.4 7.3 142 115-257 22-193 (230)
145 PRK11831 putative ABC transpor 99.3 1.8E-11 3.9E-16 107.8 8.6 138 115-256 29-204 (269)
146 cd03292 ABC_FtsE_transporter F 99.3 1.9E-11 4.1E-16 103.8 8.4 137 115-256 23-196 (214)
147 cd03219 ABC_Mj1267_LivG_branch 99.3 3.1E-11 6.8E-16 104.0 9.8 75 115-189 22-99 (236)
148 PRK10771 thiQ thiamine transpo 99.3 1.8E-11 3.9E-16 105.4 8.3 139 115-257 21-191 (232)
149 TIGR03864 PQQ_ABC_ATP ABC tran 99.3 3.6E-11 7.7E-16 103.8 10.2 140 115-257 23-194 (236)
150 PRK13650 cbiO cobalt transport 99.3 9.6E-12 2.1E-16 110.1 6.7 139 115-257 29-202 (279)
151 cd03260 ABC_PstB_phosphate_tra 99.2 1.5E-11 3.3E-16 105.4 7.5 137 115-257 22-201 (227)
152 PRK13635 cbiO cobalt transport 99.2 2.3E-11 5.1E-16 107.7 8.7 140 115-257 29-202 (279)
153 PRK10575 iron-hydroxamate tran 99.2 1.7E-11 3.6E-16 107.7 7.7 139 115-257 33-209 (265)
154 cd03235 ABC_Metallic_Cations A 99.2 1.6E-11 3.5E-16 104.2 7.3 136 115-257 21-193 (213)
155 TIGR02673 FtsE cell division A 99.2 3.5E-11 7.6E-16 102.2 9.4 73 115-188 24-102 (214)
156 TIGR03608 L_ocin_972_ABC putat 99.2 2.2E-11 4.8E-16 102.8 8.1 73 115-188 20-99 (206)
157 cd03300 ABC_PotA_N PotA is an 99.2 1.7E-11 3.7E-16 105.6 7.4 139 115-257 22-192 (232)
158 cd03224 ABC_TM1139_LivF_branch 99.2 1.5E-11 3.2E-16 105.0 7.0 142 115-257 22-193 (222)
159 TIGR03522 GldA_ABC_ATP gliding 99.2 1.5E-11 3.2E-16 110.1 7.3 139 115-257 24-193 (301)
160 PRK13539 cytochrome c biogenes 99.2 2.6E-11 5.6E-16 102.7 8.3 138 115-257 24-188 (207)
161 cd01125 repA Hexameric Replica 99.2 1.7E-10 3.6E-15 99.9 13.6 129 119-259 1-162 (239)
162 cd03232 ABC_PDR_domain2 The pl 99.2 4.1E-11 8.9E-16 100.3 9.5 124 115-257 29-169 (192)
163 cd03297 ABC_ModC_molybdenum_tr 99.2 1.7E-11 3.7E-16 104.2 7.3 138 115-257 20-193 (214)
164 TIGR01184 ntrCD nitrate transp 99.2 3.6E-11 7.8E-16 103.5 9.4 137 115-257 7-176 (230)
165 cd03218 ABC_YhbG The ABC trans 99.2 2.1E-11 4.6E-16 104.8 7.9 137 115-256 22-193 (232)
166 cd03262 ABC_HisP_GlnQ_permease 99.2 2.9E-11 6.3E-16 102.6 8.6 73 115-188 22-99 (213)
167 PRK11300 livG leucine/isoleuci 99.2 3.4E-11 7.4E-16 105.0 9.1 74 115-188 27-103 (255)
168 TIGR03005 ectoine_ehuA ectoine 99.2 3.9E-11 8.5E-16 104.5 9.4 139 115-257 22-208 (252)
169 TIGR01166 cbiO cobalt transpor 99.2 4.3E-11 9.4E-16 99.8 9.3 138 115-257 14-188 (190)
170 cd03257 ABC_NikE_OppD_transpor 99.2 2.6E-11 5.7E-16 103.8 8.1 139 115-257 27-207 (228)
171 cd03228 ABCC_MRP_Like The MRP 99.2 6.6E-11 1.4E-15 97.2 10.1 121 115-257 24-156 (171)
172 cd03215 ABC_Carb_Monos_II This 99.2 6.5E-11 1.4E-15 98.2 10.1 122 115-256 22-164 (182)
173 PRK13543 cytochrome c biogenes 99.2 7.3E-11 1.6E-15 100.4 10.7 73 115-188 33-105 (214)
174 cd03234 ABCG_White The White s 99.2 4.2E-11 9.1E-16 102.7 9.2 74 115-189 29-105 (226)
175 cd03263 ABC_subfamily_A The AB 99.2 4.5E-11 9.7E-16 102.0 9.3 74 115-188 24-98 (220)
176 PRK11308 dppF dipeptide transp 99.2 5.4E-11 1.2E-15 107.7 10.2 140 115-257 37-216 (327)
177 cd03294 ABC_Pro_Gly_Bertaine T 99.2 3.2E-11 7E-16 106.2 8.5 139 115-257 46-222 (269)
178 TIGR01189 ccmA heme ABC export 99.2 3.2E-11 7E-16 101.3 8.1 137 115-256 22-187 (198)
179 PRK09493 glnQ glutamine ABC tr 99.2 3.4E-11 7.4E-16 104.2 8.4 138 115-257 23-197 (240)
180 PRK11248 tauB taurine transpor 99.2 3.5E-11 7.5E-16 105.2 8.6 137 115-257 23-190 (255)
181 PRK15079 oligopeptide ABC tran 99.2 2.2E-11 4.8E-16 110.3 7.5 139 115-257 43-223 (331)
182 PRK10895 lipopolysaccharide AB 99.2 5.6E-11 1.2E-15 102.9 9.7 138 115-256 25-197 (241)
183 PRK13637 cbiO cobalt transport 99.2 4.8E-11 1E-15 106.1 9.5 139 115-257 29-206 (287)
184 PRK13538 cytochrome c biogenes 99.2 3.1E-11 6.7E-16 102.0 7.8 139 115-258 23-191 (204)
185 PRK11264 putative amino-acid A 99.2 8.3E-11 1.8E-15 102.3 10.6 139 115-257 25-205 (250)
186 PRK10247 putative ABC transpor 99.2 4.3E-11 9.2E-16 102.7 8.4 140 115-258 29-200 (225)
187 cd03216 ABC_Carb_Monos_I This 99.2 8.4E-11 1.8E-15 95.9 9.7 116 115-257 22-143 (163)
188 cd03231 ABC_CcmA_heme_exporter 99.2 3.7E-11 8E-16 101.3 7.8 74 115-188 22-96 (201)
189 PRK13541 cytochrome c biogenes 99.2 6E-11 1.3E-15 99.5 9.0 72 115-188 22-93 (195)
190 PRK10253 iron-enterobactin tra 99.2 6.6E-11 1.4E-15 104.0 9.7 139 115-257 29-205 (265)
191 PRK13647 cbiO cobalt transport 99.2 3.2E-11 6.9E-16 106.6 7.6 138 115-257 27-199 (274)
192 PRK14250 phosphate ABC transpo 99.2 7.3E-11 1.6E-15 102.2 9.7 139 115-257 25-193 (241)
193 TIGR02770 nickel_nikD nickel i 99.2 4.5E-11 9.8E-16 102.8 8.3 142 115-257 8-187 (230)
194 cd03299 ABC_ModC_like Archeal 99.2 5E-11 1.1E-15 102.9 8.6 139 115-257 21-191 (235)
195 PRK10908 cell division protein 99.2 6.6E-11 1.4E-15 101.2 9.1 138 115-257 24-198 (222)
196 PRK09984 phosphonate/organopho 99.2 8.3E-11 1.8E-15 103.1 9.9 139 115-257 26-214 (262)
197 cd03233 ABC_PDR_domain1 The pl 99.2 7.2E-11 1.6E-15 99.7 9.0 73 115-188 29-106 (202)
198 COG1122 CbiO ABC-type cobalt t 99.2 7.2E-11 1.6E-15 101.7 9.1 59 115-174 26-88 (235)
199 PRK13640 cbiO cobalt transport 99.2 4.6E-11 1E-15 105.9 8.2 139 115-257 29-205 (282)
200 PRK10619 histidine/lysine/argi 99.2 7.5E-11 1.6E-15 103.1 9.4 137 115-256 27-212 (257)
201 PRK13634 cbiO cobalt transport 99.2 3.2E-11 7E-16 107.4 7.1 138 115-257 29-207 (290)
202 cd03247 ABCC_cytochrome_bd The 99.2 1.2E-10 2.7E-15 96.2 10.0 121 115-257 24-158 (178)
203 TIGR02982 heterocyst_DevA ABC 99.2 3E-11 6.4E-16 103.2 6.5 139 115-257 27-203 (220)
204 cd03223 ABCD_peroxisomal_ALDP 99.2 7.4E-11 1.6E-15 96.5 8.6 111 115-257 23-149 (166)
205 cd03267 ABC_NatA_like Similar 99.2 2.8E-11 6.1E-16 104.5 6.3 139 115-257 43-215 (236)
206 PRK13652 cbiO cobalt transport 99.2 1.2E-10 2.6E-15 103.1 10.2 139 115-257 26-199 (277)
207 PRK11124 artP arginine transpo 99.2 1.1E-10 2.4E-15 101.0 9.6 72 115-187 24-104 (242)
208 COG4619 ABC-type uncharacteriz 99.2 1.4E-10 3E-15 93.4 9.3 73 102-177 14-89 (223)
209 cd03222 ABC_RNaseL_inhibitor T 99.2 1.8E-10 3.8E-15 95.3 10.2 111 115-257 21-133 (177)
210 TIGR03411 urea_trans_UrtD urea 99.2 6.8E-11 1.5E-15 102.3 8.0 74 115-188 24-100 (242)
211 PRK13646 cbiO cobalt transport 99.2 1.4E-10 3E-15 103.1 10.2 145 106-257 22-207 (286)
212 TIGR02769 nickel_nikE nickel i 99.2 1.2E-10 2.6E-15 102.4 9.6 139 115-257 33-212 (265)
213 PRK13648 cbiO cobalt transport 99.2 6E-11 1.3E-15 104.5 7.7 139 115-257 31-204 (269)
214 PRK13651 cobalt transporter AT 99.2 5.9E-11 1.3E-15 106.4 7.7 138 115-257 29-226 (305)
215 PRK13642 cbiO cobalt transport 99.2 5.6E-11 1.2E-15 105.1 7.4 140 115-258 29-203 (277)
216 PRK11231 fecE iron-dicitrate t 99.2 6.3E-11 1.4E-15 103.5 7.6 74 115-188 24-99 (255)
217 PRK13548 hmuV hemin importer A 99.2 2.4E-10 5.1E-15 100.1 11.0 74 115-188 24-99 (258)
218 PRK15112 antimicrobial peptide 99.2 8.1E-11 1.8E-15 103.6 8.1 140 115-257 35-211 (267)
219 cd03264 ABC_drug_resistance_li 99.2 1.1E-10 2.4E-15 99.0 8.5 73 115-188 22-95 (211)
220 PRK13632 cbiO cobalt transport 99.2 1.2E-10 2.5E-15 102.8 8.9 139 115-257 31-204 (271)
221 PRK13644 cbiO cobalt transport 99.2 5.5E-11 1.2E-15 105.0 6.8 138 115-257 24-197 (274)
222 PRK13636 cbiO cobalt transport 99.2 1.2E-10 2.5E-15 103.4 8.8 140 115-257 28-203 (283)
223 TIGR00968 3a0106s01 sulfate AB 99.2 1.2E-10 2.6E-15 100.6 8.6 142 115-257 22-192 (237)
224 PRK13633 cobalt transporter AT 99.2 1.6E-10 3.5E-15 102.4 9.5 140 115-258 32-207 (280)
225 PRK11614 livF leucine/isoleuci 99.2 5E-11 1.1E-15 102.9 6.0 74 115-188 27-103 (237)
226 COG4559 ABC-type hemin transpo 99.2 2.7E-10 5.9E-15 95.0 10.0 85 103-189 13-99 (259)
227 COG4608 AppF ABC-type oligopep 99.2 1.2E-10 2.6E-15 100.7 8.2 133 104-256 26-170 (268)
228 TIGR01978 sufC FeS assembly AT 99.1 1.2E-10 2.5E-15 100.8 8.2 74 115-189 22-101 (243)
229 COG4598 HisP ABC-type histidin 99.1 2.6E-10 5.6E-15 92.9 9.5 132 115-256 28-212 (256)
230 TIGR03873 F420-0_ABC_ATP propo 99.1 2.1E-10 4.5E-15 100.3 9.8 73 115-188 23-98 (256)
231 PRK13641 cbiO cobalt transport 99.1 8.7E-11 1.9E-15 104.4 7.4 137 115-257 29-206 (287)
232 COG1123 ATPase components of v 99.1 1.1E-10 2.3E-15 110.1 8.2 139 115-256 31-215 (539)
233 TIGR03740 galliderm_ABC gallid 99.1 1.7E-10 3.8E-15 98.6 8.8 137 115-257 22-185 (223)
234 PRK13649 cbiO cobalt transport 99.1 1.1E-10 2.4E-15 103.3 7.8 138 115-257 29-206 (280)
235 cd03214 ABC_Iron-Siderophores_ 99.1 2.2E-10 4.7E-15 94.9 9.1 124 115-257 21-159 (180)
236 PRK13643 cbiO cobalt transport 99.1 9.6E-11 2.1E-15 104.2 7.4 138 115-257 28-205 (288)
237 PRK10418 nikD nickel transport 99.1 1.1E-10 2.4E-15 102.0 7.6 140 115-257 25-202 (254)
238 TIGR00972 3a0107s01c2 phosphat 99.1 1.1E-10 2.3E-15 101.5 7.4 72 115-188 23-104 (247)
239 PRK13638 cbiO cobalt transport 99.1 1.1E-10 2.3E-15 103.0 7.5 139 115-257 23-197 (271)
240 TIGR02324 CP_lyasePhnL phospho 99.1 1.9E-10 4.1E-15 98.4 8.8 74 115-188 30-113 (224)
241 PRK10261 glutathione transport 99.1 1.4E-10 3.1E-15 113.5 8.8 146 107-257 340-525 (623)
242 PRK09473 oppD oligopeptide tra 99.1 2.2E-10 4.8E-15 103.8 9.4 139 115-257 38-223 (330)
243 PRK09544 znuC high-affinity zi 99.1 1.5E-10 3.3E-15 101.0 8.0 38 115-152 26-63 (251)
244 PRK13645 cbiO cobalt transport 99.1 7.6E-11 1.6E-15 104.9 6.2 139 115-257 33-212 (289)
245 TIGR03771 anch_rpt_ABC anchore 99.1 4.4E-10 9.5E-15 96.3 10.7 68 116-186 3-72 (223)
246 PRK13639 cbiO cobalt transport 99.1 1E-10 2.2E-15 103.3 6.9 138 115-257 24-198 (275)
247 PRK10419 nikE nickel transport 99.1 3.8E-10 8.3E-15 99.3 10.5 140 115-257 34-213 (268)
248 PRK14267 phosphate ABC transpo 99.1 3.9E-10 8.4E-15 98.3 10.1 73 115-188 26-108 (253)
249 PRK15093 antimicrobial peptide 99.1 1.7E-10 3.7E-15 104.5 8.1 138 115-256 29-219 (330)
250 PRK11022 dppD dipeptide transp 99.1 1.9E-10 4.2E-15 104.0 8.2 139 115-257 29-215 (326)
251 PRK14247 phosphate ABC transpo 99.1 4E-10 8.6E-15 98.1 9.9 73 115-188 25-105 (250)
252 cd03245 ABCC_bacteriocin_expor 99.1 1.1E-10 2.3E-15 99.6 6.2 70 115-186 26-98 (220)
253 COG0444 DppD ABC-type dipeptid 99.1 2.9E-10 6.2E-15 100.5 8.9 146 105-256 19-214 (316)
254 cd03217 ABC_FeS_Assembly ABC-t 99.1 6E-10 1.3E-14 93.9 10.3 123 115-257 22-165 (200)
255 COG4618 ArpD ABC-type protease 99.1 5.2E-10 1.1E-14 103.7 10.5 64 115-178 358-423 (580)
256 TIGR03269 met_CoM_red_A2 methy 99.1 2.6E-10 5.6E-15 109.5 8.8 140 115-257 306-489 (520)
257 PRK13631 cbiO cobalt transport 99.1 2E-10 4.4E-15 103.6 7.6 144 106-257 41-237 (320)
258 PRK09700 D-allose transporter 99.1 2.7E-10 5.9E-15 109.0 8.8 73 115-187 27-102 (510)
259 PRK15439 autoinducer 2 ABC tra 99.1 4.7E-10 1E-14 107.4 10.3 139 115-257 33-201 (510)
260 cd03252 ABCC_Hemolysin The ABC 99.1 1.2E-10 2.6E-15 100.5 5.7 71 115-187 24-97 (237)
261 PRK13547 hmuV hemin importer A 99.1 4.4E-10 9.4E-15 99.2 9.2 73 115-188 23-106 (272)
262 TIGR03269 met_CoM_red_A2 methy 99.1 2.7E-10 5.9E-15 109.3 8.4 140 115-257 22-230 (520)
263 PRK10762 D-ribose transporter 99.1 3.2E-10 6.9E-15 108.4 8.8 74 115-188 26-102 (501)
264 PRK14268 phosphate ABC transpo 99.1 6.1E-10 1.3E-14 97.5 9.8 73 115-189 34-116 (258)
265 PRK11701 phnK phosphonate C-P 99.1 5.2E-10 1.1E-14 97.9 9.3 60 115-174 28-98 (258)
266 cd03251 ABCC_MsbA MsbA is an e 99.1 8.8E-10 1.9E-14 94.9 10.4 72 115-187 24-97 (234)
267 cd03290 ABCC_SUR1_N The SUR do 99.1 3E-10 6.5E-15 96.8 7.3 140 115-258 23-204 (218)
268 COG3598 RepA RecA-family ATPas 99.1 3.1E-09 6.8E-14 93.5 13.5 133 116-259 86-245 (402)
269 PRK13409 putative ATPase RIL; 99.1 2.8E-10 6.1E-15 110.5 7.7 129 115-257 361-515 (590)
270 PRK14242 phosphate transporter 99.1 8.1E-10 1.8E-14 96.3 9.9 72 115-188 28-109 (253)
271 PRK14258 phosphate ABC transpo 99.1 6.2E-10 1.3E-14 97.6 9.0 142 115-257 29-212 (261)
272 TIGR01187 potA spermidine/putr 99.1 1.5E-10 3.4E-15 104.6 5.3 130 124-257 1-162 (325)
273 PRK10982 galactose/methyl gala 99.1 5.7E-10 1.2E-14 106.3 9.4 74 115-188 20-96 (491)
274 PRK14235 phosphate transporter 99.1 6.7E-10 1.5E-14 97.7 9.1 72 115-188 41-122 (267)
275 PRK10261 glutathione transport 99.1 1.7E-10 3.7E-15 112.9 5.8 139 115-256 38-229 (623)
276 cd00267 ABC_ATPase ABC (ATP-bi 99.1 1.5E-09 3.3E-14 87.7 10.4 117 115-258 21-142 (157)
277 cd03238 ABC_UvrA The excision 99.1 5.4E-09 1.2E-13 86.4 13.7 122 115-257 17-150 (176)
278 PRK14241 phosphate transporter 99.1 9.7E-10 2.1E-14 96.1 9.9 74 115-189 26-109 (258)
279 TIGR02323 CP_lyasePhnK phospho 99.1 5.9E-10 1.3E-14 97.1 8.4 40 115-154 25-64 (253)
280 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.1 9.8E-10 2.1E-14 87.8 9.0 78 115-210 22-101 (144)
281 COG2274 SunT ABC-type bacterio 99.1 8.3E-10 1.8E-14 108.6 10.3 71 105-177 487-559 (709)
282 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.0 2.5E-10 5.4E-15 98.6 5.8 71 115-187 25-98 (238)
283 PRK09700 D-allose transporter 99.0 7.2E-10 1.6E-14 106.1 9.6 73 115-187 285-363 (510)
284 PRK03695 vitamin B12-transport 99.0 1.5E-09 3.2E-14 94.6 10.6 71 115-187 18-91 (248)
285 PRK11288 araG L-arabinose tran 99.0 6.5E-10 1.4E-14 106.3 9.0 139 115-257 26-201 (501)
286 cd03254 ABCC_Glucan_exporter_l 99.0 2.2E-10 4.7E-15 98.3 5.2 70 115-186 25-97 (229)
287 COG4133 CcmA ABC-type transpor 99.0 1.4E-09 2.9E-14 89.2 9.5 149 102-258 16-192 (209)
288 PRK10938 putative molybdenum t 99.0 9E-10 2E-14 105.0 9.9 60 115-174 25-86 (490)
289 cd03253 ABCC_ATM1_transporter 99.0 1.7E-09 3.6E-14 93.2 10.7 71 115-187 23-96 (236)
290 cd03250 ABCC_MRP_domain1 Domai 99.0 4E-10 8.7E-15 95.1 6.6 39 115-153 27-65 (204)
291 PRK14269 phosphate ABC transpo 99.0 8.9E-10 1.9E-14 95.7 8.7 72 115-188 24-101 (246)
292 PRK10744 pstB phosphate transp 99.0 8.2E-10 1.8E-14 96.7 8.5 72 115-188 35-116 (260)
293 PRK14273 phosphate ABC transpo 99.0 9.3E-10 2E-14 96.0 8.8 73 115-189 29-111 (254)
294 PRK14249 phosphate ABC transpo 99.0 9.9E-10 2.1E-14 95.7 8.9 73 115-189 26-108 (251)
295 PRK15056 manganese/iron transp 99.0 6.5E-10 1.4E-14 98.1 7.8 59 115-174 29-87 (272)
296 CHL00131 ycf16 sulfate ABC tra 99.0 1.5E-09 3.3E-14 94.4 10.0 72 115-187 29-106 (252)
297 COG4525 TauB ABC-type taurine 99.0 6.4E-10 1.4E-14 91.7 7.1 137 115-257 27-194 (259)
298 PRK14254 phosphate ABC transpo 99.0 1.1E-09 2.3E-14 97.4 9.0 72 115-188 61-142 (285)
299 TIGR02868 CydC thiol reductant 99.0 1.1E-09 2.4E-14 105.3 9.7 68 115-185 357-427 (529)
300 TIGR00955 3a01204 The Eye Pigm 99.0 2.7E-10 5.8E-15 111.5 5.4 146 106-257 40-227 (617)
301 PRK14270 phosphate ABC transpo 99.0 2.1E-09 4.6E-14 93.6 10.6 72 115-188 26-107 (251)
302 PRK13549 xylose transporter AT 99.0 7.9E-10 1.7E-14 105.8 8.5 138 115-257 27-204 (506)
303 PRK14259 phosphate ABC transpo 99.0 1E-09 2.2E-14 96.7 8.6 72 115-188 35-116 (269)
304 PRK15134 microcin C ABC transp 99.0 7.5E-10 1.6E-14 106.5 8.4 144 107-257 302-487 (529)
305 PRK10762 D-ribose transporter 99.0 1.1E-09 2.3E-14 104.8 9.4 139 115-257 274-456 (501)
306 PRK14256 phosphate ABC transpo 99.0 1.8E-09 3.9E-14 94.1 10.0 73 115-188 26-108 (252)
307 PRK14263 phosphate ABC transpo 99.0 1.7E-09 3.8E-14 94.8 9.9 72 115-188 30-111 (261)
308 cd03244 ABCC_MRP_domain2 Domai 99.0 9.6E-10 2.1E-14 93.8 8.0 70 115-186 26-98 (221)
309 PRK15064 ABC transporter ATP-b 99.0 6.4E-10 1.4E-14 107.0 7.6 63 115-186 23-85 (530)
310 PRK14240 phosphate transporter 99.0 1.2E-09 2.7E-14 95.0 8.5 72 115-188 25-106 (250)
311 PRK14272 phosphate ABC transpo 99.0 1.9E-09 4.1E-14 93.9 9.6 73 115-188 26-108 (252)
312 PRK14238 phosphate transporter 99.0 1.7E-09 3.7E-14 95.4 9.4 72 115-188 46-127 (271)
313 PRK14274 phosphate ABC transpo 99.0 2.6E-09 5.6E-14 93.5 10.4 72 115-188 34-115 (259)
314 PRK11288 araG L-arabinose tran 99.0 1.5E-09 3.3E-14 103.7 9.4 73 115-187 275-353 (501)
315 PRK14248 phosphate ABC transpo 99.0 3.7E-09 8E-14 93.0 11.1 72 115-188 43-124 (268)
316 COG4988 CydD ABC-type transpor 99.0 3.1E-09 6.6E-14 100.3 11.0 136 115-256 343-515 (559)
317 PRK14253 phosphate ABC transpo 99.0 2.2E-09 4.8E-14 93.3 9.5 72 115-188 25-105 (249)
318 cd03369 ABCC_NFT1 Domain 2 of 99.0 3.6E-09 7.7E-14 89.5 10.4 71 115-186 30-102 (207)
319 TIGR02633 xylG D-xylose ABC tr 99.0 1.5E-09 3.2E-14 103.8 9.0 139 115-257 23-202 (500)
320 PRK14271 phosphate ABC transpo 99.0 1.6E-09 3.4E-14 95.9 8.5 72 115-188 43-123 (276)
321 PRK09580 sufC cysteine desulfu 99.0 2.7E-09 5.8E-14 92.7 9.8 63 115-178 23-91 (248)
322 cd03248 ABCC_TAP TAP, the Tran 99.0 1.7E-09 3.7E-14 92.6 8.5 71 115-187 36-109 (226)
323 KOG0061 Transporter, ABC super 99.0 6.2E-10 1.4E-14 108.5 6.4 154 107-264 46-238 (613)
324 PLN03211 ABC transporter G-25; 99.0 6.6E-10 1.4E-14 109.3 6.5 145 106-257 83-267 (659)
325 PRK14262 phosphate ABC transpo 99.0 4.5E-09 9.8E-14 91.4 11.1 72 115-188 25-106 (250)
326 PRK14265 phosphate ABC transpo 99.0 3E-09 6.5E-14 94.0 10.1 72 115-188 42-123 (274)
327 PRK14245 phosphate ABC transpo 99.0 4.2E-09 9E-14 91.7 10.7 72 115-188 25-106 (250)
328 PRK15134 microcin C ABC transp 99.0 9.2E-10 2E-14 105.9 7.2 140 115-257 31-218 (529)
329 PRK14239 phosphate transporter 99.0 2.3E-09 4.9E-14 93.4 9.0 73 115-189 27-109 (252)
330 PRK13549 xylose transporter AT 99.0 1.2E-09 2.7E-14 104.5 7.9 139 115-257 284-466 (506)
331 PRK14243 phosphate transporter 99.0 3.1E-09 6.8E-14 93.3 9.8 72 115-188 32-113 (264)
332 PRK14260 phosphate ABC transpo 99.0 2.9E-09 6.3E-14 93.2 9.4 72 115-188 29-110 (259)
333 PRK14251 phosphate ABC transpo 99.0 3.9E-09 8.5E-14 91.9 10.1 72 115-188 26-107 (251)
334 PRK14236 phosphate transporter 99.0 2.8E-09 6.2E-14 94.0 9.3 72 115-188 47-128 (272)
335 TIGR03797 NHPM_micro_ABC2 NHPM 99.0 3.2E-09 7E-14 105.2 10.7 139 115-256 475-645 (686)
336 COG4167 SapF ABC-type antimicr 99.0 8.1E-09 1.8E-13 84.5 11.0 60 115-174 35-96 (267)
337 PRK04296 thymidine kinase; Pro 99.0 9E-09 1.9E-13 86.1 11.7 112 119-256 2-116 (190)
338 PRK14261 phosphate ABC transpo 99.0 2E-09 4.3E-14 93.8 8.0 73 115-189 28-110 (253)
339 PRK14244 phosphate ABC transpo 99.0 2.4E-09 5.2E-14 93.3 8.4 73 115-188 27-108 (251)
340 PRK11176 lipid transporter ATP 99.0 4.7E-09 1E-13 102.0 11.3 70 115-186 365-437 (582)
341 COG0396 sufC Cysteine desulfur 99.0 3.4E-09 7.4E-14 89.5 8.9 73 115-188 26-104 (251)
342 PRK11174 cysteine/glutathione 99.0 4.5E-09 9.8E-14 102.3 11.1 62 115-178 372-436 (588)
343 PRK14252 phosphate ABC transpo 99.0 3.2E-09 6.9E-14 93.3 9.1 73 115-188 38-121 (265)
344 PRK14264 phosphate ABC transpo 98.9 2.7E-09 5.8E-14 95.8 8.7 73 115-189 67-149 (305)
345 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 98.9 1.7E-09 3.7E-14 92.7 7.1 38 115-152 44-81 (224)
346 PRK14275 phosphate ABC transpo 98.9 3.1E-09 6.7E-14 94.5 9.0 73 115-189 61-143 (286)
347 KOG2373 Predicted mitochondria 98.9 6.2E-09 1.4E-13 92.5 10.5 147 103-259 259-428 (514)
348 TIGR03796 NHPM_micro_ABC1 NHPM 98.9 4.4E-09 9.5E-14 104.6 10.9 135 115-256 501-672 (710)
349 PRK14237 phosphate transporter 98.9 4.6E-09 1E-13 92.4 9.8 72 115-188 42-123 (267)
350 PRK15439 autoinducer 2 ABC tra 98.9 3E-09 6.6E-14 101.9 9.3 72 115-186 285-362 (510)
351 TIGR01257 rim_protein retinal- 98.9 1.6E-09 3.5E-14 116.3 8.0 145 106-257 1954-2131(2272)
352 PRK10938 putative molybdenum t 98.9 4.1E-09 9E-14 100.4 10.1 72 115-186 282-359 (490)
353 PRK14266 phosphate ABC transpo 98.9 4.5E-09 9.7E-14 91.4 9.5 72 115-188 25-106 (250)
354 PRK14246 phosphate ABC transpo 98.9 7E-09 1.5E-13 90.8 10.5 74 115-188 32-113 (257)
355 TIGR02633 xylG D-xylose ABC tr 98.9 3E-09 6.6E-14 101.6 8.9 73 115-187 282-361 (500)
356 TIGR01194 cyc_pep_trnsptr cycl 98.9 1.3E-09 2.8E-14 105.4 6.3 63 115-178 364-429 (555)
357 COG4674 Uncharacterized ABC-ty 98.9 1.3E-09 2.8E-14 89.9 5.2 85 103-189 17-105 (249)
358 PRK11160 cysteine/glutathione 98.9 3.3E-09 7.1E-14 103.0 9.1 70 115-186 362-434 (574)
359 COG4778 PhnL ABC-type phosphon 98.9 4.1E-09 8.9E-14 85.2 7.9 143 105-256 25-212 (235)
360 cd03289 ABCC_CFTR2 The CFTR su 98.9 2.3E-09 5E-14 94.7 7.2 69 115-186 26-97 (275)
361 COG1132 MdlB ABC-type multidru 98.9 5.6E-09 1.2E-13 101.3 10.2 70 115-186 351-423 (567)
362 COG4172 ABC-type uncharacteriz 98.9 6.1E-09 1.3E-13 94.4 9.5 138 115-256 309-487 (534)
363 cd03236 ABC_RNaseL_inhibitor_d 98.9 8.8E-09 1.9E-13 90.1 10.4 36 116-151 23-58 (255)
364 cd03288 ABCC_SUR2 The SUR doma 98.9 1.2E-09 2.6E-14 95.5 5.0 62 115-177 43-107 (257)
365 COG4586 ABC-type uncharacteriz 98.9 5.4E-09 1.2E-13 90.3 8.7 55 115-169 46-101 (325)
366 PRK15064 ABC transporter ATP-b 98.9 2.4E-09 5.1E-14 103.1 7.2 131 115-257 341-496 (530)
367 TIGR02857 CydD thiol reductant 98.9 6.9E-09 1.5E-13 99.8 10.4 77 107-187 338-417 (529)
368 PRK11819 putative ABC transpor 98.9 5.4E-09 1.2E-13 101.2 9.6 65 115-188 29-93 (556)
369 PLN03140 ABC transporter G fam 98.9 9.7E-10 2.1E-14 116.0 4.7 77 114-191 186-265 (1470)
370 PRK14257 phosphate ABC transpo 98.9 5.6E-09 1.2E-13 94.6 8.8 72 115-188 104-185 (329)
371 COG4136 ABC-type uncharacteriz 98.9 2.3E-09 5E-14 85.0 5.4 140 115-258 24-197 (213)
372 TIGR00956 3a01205 Pleiotropic 98.9 6E-10 1.3E-14 117.5 2.7 146 107-256 77-270 (1394)
373 PRK10789 putative multidrug tr 98.9 6.3E-09 1.4E-13 101.0 9.6 71 115-187 337-410 (569)
374 PRK13657 cyclic beta-1,2-gluca 98.9 8.6E-09 1.9E-13 100.4 10.6 63 115-178 357-422 (588)
375 PRK11147 ABC transporter ATPas 98.9 3E-09 6.5E-14 104.5 7.4 131 115-257 341-498 (635)
376 TIGR01257 rim_protein retinal- 98.9 3E-09 6.5E-14 114.3 7.8 137 115-257 952-1121(2272)
377 PRK10522 multidrug transporter 98.9 4.6E-09 9.9E-14 101.5 8.4 135 115-256 345-510 (547)
378 PTZ00265 multidrug resistance 98.9 8.1E-09 1.8E-13 109.4 10.8 80 106-188 400-482 (1466)
379 PRK10790 putative multidrug tr 98.9 9.7E-09 2.1E-13 100.1 10.5 70 115-186 363-435 (592)
380 PRK13546 teichoic acids export 98.9 9.9E-09 2.1E-13 90.2 9.6 38 115-152 46-83 (264)
381 KOG0057 Mitochondrial Fe/S clu 98.9 1.3E-08 2.8E-13 95.3 10.3 138 115-257 374-547 (591)
382 TIGR03719 ABC_ABC_ChvD ATP-bin 98.9 7.2E-09 1.6E-13 100.2 9.0 65 115-188 27-91 (552)
383 TIGR03719 ABC_ABC_ChvD ATP-bin 98.9 3.6E-09 7.9E-14 102.3 6.9 131 115-257 344-501 (552)
384 TIGR03375 type_I_sec_LssB type 98.9 9.6E-09 2.1E-13 101.9 10.0 63 115-178 487-552 (694)
385 cd03291 ABCC_CFTR1 The CFTR su 98.9 2.2E-09 4.7E-14 95.2 4.8 38 115-152 59-96 (282)
386 PRK11819 putative ABC transpor 98.9 4.5E-09 9.8E-14 101.7 7.3 131 115-257 346-503 (556)
387 TIGR00958 3a01208 Conjugate Tr 98.9 1.1E-08 2.4E-13 101.7 10.2 70 115-186 503-575 (711)
388 TIGR01842 type_I_sec_PrtD type 98.9 1.6E-08 3.5E-13 97.6 11.0 76 107-186 334-412 (544)
389 TIGR02204 MsbA_rel ABC transpo 98.9 1.8E-08 3.8E-13 97.9 11.2 64 115-178 362-427 (576)
390 TIGR01193 bacteriocin_ABC ABC- 98.9 1.7E-08 3.6E-13 100.5 11.2 63 115-178 496-561 (708)
391 PRK14255 phosphate ABC transpo 98.8 1.1E-08 2.5E-13 89.0 8.7 72 115-188 27-108 (252)
392 TIGR00954 3a01203 Peroxysomal 98.8 3.6E-09 7.9E-14 104.2 6.0 129 115-257 474-640 (659)
393 PRK10982 galactose/methyl gala 98.8 1.3E-08 2.8E-13 97.1 9.3 58 115-173 270-331 (491)
394 COG1119 ModF ABC-type molybden 98.8 3.2E-08 6.9E-13 84.5 10.5 58 115-172 53-113 (257)
395 PLN03140 ABC transporter G fam 98.8 3.9E-09 8.3E-14 111.6 6.1 146 106-257 895-1080(1470)
396 TIGR01192 chvA glucan exporter 98.8 2.1E-08 4.5E-13 97.7 10.8 70 115-186 357-429 (585)
397 PF13401 AAA_22: AAA domain; P 98.8 3.2E-08 7E-13 76.9 9.7 115 117-256 2-126 (131)
398 TIGR02203 MsbA_lipidA lipid A 98.8 2.2E-08 4.7E-13 97.2 10.5 64 115-178 354-419 (571)
399 COG4161 ArtP ABC-type arginine 98.8 9.2E-08 2E-12 76.9 12.2 139 115-256 24-201 (242)
400 TIGR01846 type_I_sec_HlyB type 98.8 2.3E-08 4.9E-13 99.3 10.8 63 115-178 479-544 (694)
401 KOG0058 Peptide exporter, ABC 98.8 1.1E-08 2.3E-13 98.7 7.9 72 104-178 481-555 (716)
402 PF00005 ABC_tran: ABC transpo 98.8 9E-10 1.9E-14 86.7 0.4 70 115-185 7-79 (137)
403 PRK15177 Vi polysaccharide exp 98.8 1.2E-08 2.6E-13 86.9 7.1 40 115-154 9-48 (213)
404 TIGR00956 3a01205 Pleiotropic 98.8 4.7E-09 1E-13 110.9 5.6 145 106-257 778-963 (1394)
405 smart00382 AAA ATPases associa 98.8 1.3E-07 2.8E-12 73.0 11.9 125 118-255 1-125 (148)
406 PRK13409 putative ATPase RIL; 98.8 1.3E-08 2.9E-13 98.9 7.3 36 116-151 96-131 (590)
407 PRK10535 macrolide transporter 98.8 1.2E-08 2.6E-13 100.4 6.8 138 115-257 30-205 (648)
408 COG1101 PhnK ABC-type uncharac 98.8 8.3E-08 1.8E-12 80.5 10.5 83 105-190 20-107 (263)
409 PLN03232 ABC transporter C fam 98.8 4.1E-08 8.8E-13 104.7 11.0 69 107-178 1252-1323(1495)
410 COG4987 CydC ABC-type transpor 98.8 3E-08 6.5E-13 92.8 8.7 63 115-177 360-424 (573)
411 COG4615 PvdE ABC-type sideroph 98.8 4.4E-08 9.6E-13 88.7 9.5 63 115-177 345-409 (546)
412 PLN03130 ABC transporter C fam 98.8 4.5E-08 9.9E-13 104.7 11.1 69 107-178 1255-1326(1622)
413 PRK10636 putative ABC transpor 98.7 1.4E-08 3E-13 99.8 6.6 38 115-152 334-371 (638)
414 PRK13545 tagH teichoic acids e 98.7 3.1E-08 6.8E-13 94.0 8.4 38 115-152 46-83 (549)
415 COG1245 Predicted ATPase, RNas 98.7 3.4E-08 7.4E-13 90.8 8.1 35 114-148 362-396 (591)
416 PTZ00243 ABC transporter; Prov 98.7 5.3E-08 1.1E-12 104.0 10.9 63 115-178 1332-1397(1560)
417 cd00544 CobU Adenosylcobinamid 98.7 7.4E-08 1.6E-12 79.1 8.9 124 121-254 1-124 (169)
418 COG1134 TagH ABC-type polysacc 98.7 1.4E-07 3.1E-12 80.5 10.7 47 104-152 40-86 (249)
419 KOG0056 Heavy metal exporter H 98.7 8.3E-08 1.8E-12 89.0 9.6 126 102-231 549-689 (790)
420 TIGR00957 MRP_assoc_pro multi 98.7 8.8E-08 1.9E-12 102.3 11.3 69 107-178 1302-1373(1522)
421 PTZ00265 multidrug resistance 98.7 1.1E-07 2.5E-12 100.9 11.6 38 106-145 1183-1220(1466)
422 PRK10636 putative ABC transpor 98.7 1.4E-08 3E-13 99.8 4.4 38 115-152 23-60 (638)
423 PLN03073 ABC transporter F fam 98.7 3.7E-08 8E-13 97.7 6.8 37 115-151 531-567 (718)
424 TIGR01271 CFTR_protein cystic 98.7 1.6E-07 3.4E-12 100.2 11.8 62 115-178 1241-1305(1490)
425 COG0488 Uup ATPase components 98.6 1.6E-07 3.5E-12 89.8 9.8 38 115-152 25-62 (530)
426 KOG0055 Multidrug/pheromone ex 98.6 1.3E-07 2.8E-12 96.2 9.4 62 115-177 375-439 (1228)
427 cd03283 ABC_MutS-like MutS-lik 98.6 5.6E-07 1.2E-11 75.8 11.2 29 116-144 22-50 (199)
428 COG4172 ABC-type uncharacteriz 98.6 1.3E-07 2.8E-12 86.0 7.2 139 115-256 32-218 (534)
429 PRK11147 ABC transporter ATPas 98.5 3.4E-07 7.4E-12 90.0 9.8 38 115-152 25-62 (635)
430 PRK05800 cobU adenosylcobinami 98.5 4.7E-07 1E-11 74.4 8.8 120 120-256 2-126 (170)
431 PF13479 AAA_24: AAA domain 98.5 2.2E-06 4.8E-11 72.9 13.0 125 119-260 3-141 (213)
432 PLN03073 ABC transporter F fam 98.5 1.7E-07 3.7E-12 93.1 6.0 42 115-156 199-243 (718)
433 KOG0059 Lipid exporter ABCA1 a 98.5 7.9E-07 1.7E-11 90.4 10.5 75 114-188 586-663 (885)
434 cd03278 ABC_SMC_barmotin Barmo 98.5 4.7E-07 1E-11 76.1 7.3 30 115-145 19-48 (197)
435 cd00009 AAA The AAA+ (ATPases 98.5 2.1E-06 4.5E-11 66.8 10.6 79 118-210 18-97 (151)
436 TIGR02858 spore_III_AA stage I 98.5 1.6E-06 3.4E-11 76.4 10.8 86 120-206 112-203 (270)
437 cd03243 ABC_MutS_homologs The 98.5 1.1E-06 2.4E-11 74.1 9.4 27 118-144 28-54 (202)
438 KOG0054 Multidrug resistance-a 98.4 1.4E-06 3E-11 90.6 11.5 62 115-177 1162-1226(1381)
439 TIGR01271 CFTR_protein cystic 98.4 5.4E-07 1.2E-11 96.2 8.2 61 115-187 448-508 (1490)
440 PLN03130 ABC transporter C fam 98.4 5.8E-07 1.2E-11 96.4 8.4 53 115-178 639-692 (1622)
441 COG0488 Uup ATPase components 98.4 2.7E-06 5.8E-11 81.5 12.1 121 115-256 344-496 (530)
442 TIGR01618 phage_P_loop phage n 98.4 5.8E-06 1.3E-10 70.5 12.4 125 119-258 12-145 (220)
443 KOG0055 Multidrug/pheromone ex 98.4 3.1E-06 6.8E-11 86.4 11.9 63 115-178 1012-1077(1228)
444 PRK10416 signal recognition pa 98.4 1.1E-05 2.4E-10 72.7 14.1 90 117-209 112-208 (318)
445 cd03272 ABC_SMC3_euk Eukaryoti 98.4 1.4E-06 3E-11 75.4 7.7 24 119-142 23-46 (243)
446 PLN03232 ABC transporter C fam 98.4 5.3E-07 1.2E-11 96.3 6.1 37 115-151 639-675 (1495)
447 PRK07721 fliI flagellum-specif 98.4 1.9E-06 4.1E-11 80.7 9.0 53 98-153 140-192 (438)
448 COG4178 ABC-type uncharacteriz 98.3 3.7E-06 8E-11 80.8 11.1 35 115-149 415-449 (604)
449 cd03227 ABC_Class2 ABC-type Cl 98.3 6.9E-06 1.5E-10 66.8 10.8 120 118-257 20-142 (162)
450 cd03271 ABC_UvrA_II The excisi 98.3 6E-06 1.3E-10 72.4 10.7 26 115-140 17-42 (261)
451 PTZ00243 ABC transporter; Prov 98.3 5E-07 1.1E-11 96.6 4.7 60 115-186 682-741 (1560)
452 TIGR00957 MRP_assoc_pro multi 98.3 2.3E-06 5.1E-11 91.6 9.6 60 115-186 660-719 (1522)
453 cd03280 ABC_MutS2 MutS2 homolo 98.3 4.8E-06 1E-10 70.1 9.5 25 116-140 24-49 (200)
454 PRK07196 fliI flagellum-specif 98.3 7.3E-07 1.6E-11 83.1 4.6 47 97-146 136-182 (434)
455 PF00004 AAA: ATPase family as 98.3 6.2E-06 1.3E-10 63.7 9.2 118 122-265 1-120 (132)
456 KOG0065 Pleiotropic drug resis 98.3 3.1E-06 6.7E-11 86.7 9.1 77 106-185 806-884 (1391)
457 KOG0733 Nuclear AAA ATPase (VC 98.3 5.9E-06 1.3E-10 78.6 9.9 129 114-267 218-349 (802)
458 PF05621 TniB: Bacterial TniB 98.2 4.2E-05 9E-10 67.8 14.3 115 120-253 62-187 (302)
459 PF13173 AAA_14: AAA domain 98.2 1.2E-05 2.6E-10 62.7 9.6 97 119-256 2-99 (128)
460 cd01128 rho_factor Transcripti 98.2 4.6E-06 1E-10 72.6 7.7 100 105-210 5-116 (249)
461 cd03240 ABC_Rad50 The catalyti 98.2 2.6E-06 5.6E-11 72.0 5.8 25 116-141 20-44 (204)
462 PTZ00361 26 proteosome regulat 98.2 1.2E-05 2.5E-10 75.5 10.7 120 115-256 213-332 (438)
463 cd03287 ABC_MSH3_euk MutS3 hom 98.2 1.2E-05 2.6E-10 68.8 9.6 35 115-149 27-62 (222)
464 COG5265 ATM1 ABC-type transpor 98.2 1.8E-05 3.9E-10 72.5 10.9 63 115-178 285-350 (497)
465 PTZ00454 26S protease regulato 98.2 7.7E-06 1.7E-10 75.9 8.6 121 114-256 174-294 (398)
466 PRK14974 cell division protein 98.2 7.3E-05 1.6E-09 67.8 14.7 91 118-210 139-235 (336)
467 PF00448 SRP54: SRP54-type pro 98.2 5.6E-05 1.2E-09 63.5 12.9 87 120-208 2-94 (196)
468 cd03281 ABC_MSH5_euk MutS5 hom 98.1 1.8E-05 3.9E-10 67.3 9.9 25 119-143 29-53 (213)
469 cd01131 PilT Pilus retraction 98.1 2.1E-05 4.6E-10 66.1 10.2 35 121-155 3-38 (198)
470 cd03270 ABC_UvrA_I The excisio 98.1 2.5E-05 5.4E-10 67.0 10.8 22 115-136 17-38 (226)
471 cd01130 VirB11-like_ATPase Typ 98.1 3.1E-06 6.8E-11 70.4 5.1 37 116-153 22-58 (186)
472 KOG0066 eIF2-interacting prote 98.1 8.9E-06 1.9E-10 74.9 8.2 121 114-256 608-761 (807)
473 KOG0054 Multidrug resistance-a 98.1 5.7E-06 1.2E-10 86.1 7.6 38 115-152 543-580 (1381)
474 PRK11889 flhF flagellar biosyn 98.1 7.4E-05 1.6E-09 68.8 13.9 86 119-209 241-332 (436)
475 PRK06731 flhF flagellar biosyn 98.1 0.00012 2.6E-09 64.4 14.7 87 118-209 74-166 (270)
476 cd03279 ABC_sbcCD SbcCD and ot 98.1 5.8E-06 1.2E-10 70.3 6.2 25 117-141 26-50 (213)
477 TIGR00554 panK_bact pantothena 98.1 1.2E-05 2.6E-10 71.4 8.4 75 118-193 61-138 (290)
478 TIGR00064 ftsY signal recognit 98.1 6.3E-05 1.4E-09 66.4 12.9 89 118-209 71-166 (272)
479 cd03115 SRP The signal recogni 98.1 3.3E-05 7.3E-10 63.2 10.4 86 121-208 2-93 (173)
480 PRK12726 flagellar biosynthesi 98.1 3.9E-05 8.4E-10 70.3 11.5 90 115-209 202-297 (407)
481 TIGR03499 FlhF flagellar biosy 98.1 2.3E-05 5.1E-10 69.5 10.0 82 117-206 192-281 (282)
482 COG1222 RPT1 ATP-dependent 26S 98.1 5E-05 1.1E-09 68.3 11.8 117 115-253 181-297 (406)
483 cd03282 ABC_MSH4_euk MutS4 hom 98.1 4.4E-05 9.6E-10 64.5 10.8 30 115-144 25-54 (204)
484 cd03284 ABC_MutS1 MutS1 homolo 98.1 2.4E-05 5.1E-10 66.8 9.2 25 120-144 31-55 (216)
485 PRK05703 flhF flagellar biosyn 98.1 8.7E-05 1.9E-09 69.6 13.5 84 117-208 219-310 (424)
486 PF00931 NB-ARC: NB-ARC domain 98.1 6.1E-05 1.3E-09 66.4 11.9 116 117-256 17-139 (287)
487 cd02025 PanK Pantothenate kina 98.0 1.7E-05 3.6E-10 67.9 7.8 37 121-157 1-39 (220)
488 TIGR03015 pepcterm_ATPase puta 98.0 3.6E-05 7.9E-10 67.3 10.1 94 115-210 38-136 (269)
489 KOG0060 Long-chain acyl-CoA tr 98.0 2.3E-05 4.9E-10 74.4 9.1 45 103-149 447-491 (659)
490 PRK00889 adenylylsulfate kinas 98.0 8.9E-06 1.9E-10 66.8 5.8 40 117-156 2-41 (175)
491 PRK09270 nucleoside triphospha 98.0 2.3E-05 5.1E-10 67.3 8.6 74 118-192 32-107 (229)
492 KOG2355 Predicted ABC-type tra 98.0 1.1E-05 2.4E-10 67.5 6.2 38 115-152 36-73 (291)
493 COG2401 ABC-type ATPase fused 98.0 5E-05 1.1E-09 69.7 10.9 30 115-144 405-434 (593)
494 PRK03846 adenylylsulfate kinas 98.0 5.2E-05 1.1E-09 63.7 10.4 40 117-156 22-61 (198)
495 COG4138 BtuD ABC-type cobalami 98.0 4.4E-06 9.5E-11 68.2 3.6 57 114-171 20-78 (248)
496 COG1618 Predicted nucleotide k 98.0 3E-05 6.4E-10 62.4 8.1 29 120-148 6-34 (179)
497 cd03285 ABC_MSH2_euk MutS2 hom 98.0 3.2E-05 6.8E-10 66.3 9.0 30 115-144 26-55 (222)
498 smart00534 MUTSac ATPase domai 98.0 3.3E-05 7.2E-10 64.2 8.9 24 121-144 1-24 (185)
499 PRK08181 transposase; Validate 98.0 3E-05 6.5E-10 68.3 9.0 109 117-259 104-212 (269)
500 PRK08084 DNA replication initi 98.0 7E-05 1.5E-09 64.7 11.1 39 118-156 44-82 (235)
No 1
>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.4e-38 Score=291.03 Aligned_cols=239 Identities=18% Similarity=0.193 Sum_probs=204.4
Q ss_pred hhhhhhhhhhhhhhhcCCCCCCCCcccccccccccccccccccccccccCCCCCCccccCcchHHHHHHHHHHHHHHhcC
Q 024152 2 ASLLRNASLLRRCLLSVSPPHPHPQSFRGGMLETSTQICNFSSKSKRKSKSDGSDSGEENMSKKDLALQQALDQITSSFG 81 (271)
Q Consensus 2 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 81 (271)
|+||+++|++|+|+.. +.++...+|.......+++++.+|+++|++++.....++.++.+++.++++.|++.+.
T Consensus 99 ~~iv~e~s~~R~Li~~------~~~i~~~~~~~~~~~~~~~l~~ae~~i~~i~~~~~~~~~~~~~~~l~~~~~~i~~~~~ 172 (435)
T COG0305 99 AKIVKEKALLRELIEA------GNEIVNLGYESEKDLDEEVLDAAEKKIFDVAERKNSEDFVHIGDLLKETMDEIEARFE 172 (435)
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHhhhccccccHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHhc
Confidence 7899999999999999 9999999987766444599999999999999998888999999999999999999988
Q ss_pred CCceeeccccCCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcC-CeEEEEcCCCCCC
Q 024152 82 KGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQG-GYCVFIDAEHALD 160 (271)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~-g~v~~~~~e~~~~ 160 (271)
+. .++|+||||.+||.+|+ ||++|++++++|+||+|||+||+++|.+++... .+|.+|+.|++..
T Consensus 173 ~~------------~~~Gi~tgf~~LD~~t~--G~~~~dLii~AaRP~mGKTafalnia~n~a~~~~~~v~iFSLEM~~e 238 (435)
T COG0305 173 NG------------GLIGVPTGFTDLDEITS--GFRPGDLIIVAARPGMGKTALALNIALNAAADGRKPVAIFSLEMSEE 238 (435)
T ss_pred cC------------CCcccccCchhhHHHhc--CCccCCEEEEccCCCCChHHHHHHHHHHHHHhcCCCeEEEEccCCHH
Confidence 53 27999999999999998 999999999999999999999999999999754 4799999999876
Q ss_pred HH----HHHHcCCcCCcceec---------------------------CCCCHHHHHHHHHHHHhcCCccEEEEcchhhh
Q 024152 161 PS----LAETIGVKTENLLLA---------------------------QPDCGEQALSLVDTLIRSGSVDVVVVDSVAAL 209 (271)
Q Consensus 161 ~~----~~~~~g~~~~~~~~~---------------------------~~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~ 209 (271)
+. ++...++...+++.+ +..+..++++.+|+++.++++++++|||++.+
T Consensus 239 ql~~R~Ls~~s~v~~~kirtg~l~~~d~~~l~~a~~~l~~~~i~IdD~~~~si~eir~~aRrlk~~~~l~~i~iDYLqLm 318 (435)
T COG0305 239 QLVMRLLSSESGIESSKLRTGRLSDDEWERLIKAASELSEAPIFIDDTPGLTITEIRSKARRLKLKHNLGLIVIDYLQLM 318 (435)
T ss_pred HHHHHhhccccccchhccccccccHHHHHHHHHHHHHHhhCCeeecCCCcCCHHHHHHHHHHHHHhcCccEEEEEEEEee
Confidence 53 333334443333222 22456689999999999999999999999999
Q ss_pred cCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcccc--------cccchhhhhhhccC
Q 024152 210 VPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVF--------SINLNKIIDESSGH 270 (271)
Q Consensus 210 ~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~--------~~~~~~~l~~s~~~ 270 (271)
.. .....+++++++++++.||.+|+|+++||+++||++ ++|+++++||| |.
T Consensus 319 ~~---------~~~~~~r~qevs~iSr~LK~lAkEl~vpvialSQLsR~~E~R~dkrP~lSDLRES-Gs 377 (435)
T COG0305 319 TG---------GKKSENRKQEVSEISRSLKGLAKELGVPVIALSQLNRSVEQRTDKRPMLSDLRES-GA 377 (435)
T ss_pred cc---------cccchhHHHHHHHHHHHHHHHHHhcCCcEEehhhhcccchhccccCCccccCccC-Cc
Confidence 73 222368899999999999999999999999999999 47899999998 53
No 2
>PRK08006 replicative DNA helicase; Provisional
Probab=100.00 E-value=4.8e-35 Score=274.59 Aligned_cols=241 Identities=15% Similarity=0.157 Sum_probs=191.4
Q ss_pred hhhhhhhhhhhhhhhcCCCCCCCCcccccccccccccccccccccccccCCCCCCcccc--CcchHHHHHHHHHHHHHHh
Q 024152 2 ASLLRNASLLRRCLLSVSPPHPHPQSFRGGMLETSTQICNFSSKSKRKSKSDGSDSGEE--NMSKKDLALQQALDQITSS 79 (271)
Q Consensus 2 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~ 79 (271)
|+||++++++|+++.. +.++...+++.+..+++++++.++..++++.+..... ++..+.+++.++++.+++.
T Consensus 123 a~iV~e~~~~R~li~~------~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 196 (471)
T PRK08006 123 ADIVRERAVVREMISV------ANEIADAGYDPQGRTSEDLLDLAESRVFQIAESRANKDEGPKNIADILDATVARIEQL 196 (471)
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHhhCCCcCCHHHHHHHHHHHHHHHHhccCCCCCCceeHHHHHHHHHHHHHHH
Confidence 7899999999999998 8888888877653478999999999999997664432 5778889999999999876
Q ss_pred cCCCceeeccccCCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh-cCCeEEEEcCCCC
Q 024152 80 FGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR-QGGYCVFIDAEHA 158 (271)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~-~~g~v~~~~~e~~ 158 (271)
+..+. ..++|+||||++||.+++ ||++|++++|+|+||||||+|++++|.+++. .+.+|+||+.|++
T Consensus 197 ~~~~~----------~~~~Gi~TG~~~LD~~~~--Gl~~G~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~ 264 (471)
T PRK08006 197 FQQPH----------DGVTGVNTGYDDLNKKTA--GLQPSDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMP 264 (471)
T ss_pred HhcCC----------CCCCcccCCCHHHHHhhc--CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCC
Confidence 53311 257899999999999997 9999999999999999999999999999885 4568999999988
Q ss_pred CCH----HHHHHcCCcCC--------------------------cceec--CCCCHHHHHHHHHHHHhcC-CccEEEEcc
Q 024152 159 LDP----SLAETIGVKTE--------------------------NLLLA--QPDCGEQALSLVDTLIRSG-SVDVVVVDS 205 (271)
Q Consensus 159 ~~~----~~~~~~g~~~~--------------------------~~~~~--~~~~~~e~~~~~~~l~~~~-~~~lvvID~ 205 (271)
..+ .++...++... ++++. ...+..++++.+++++.++ ++++|+|||
T Consensus 265 ~~ql~~Rlla~~~~v~~~~i~~~~l~~~e~~~~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDY 344 (471)
T PRK08006 265 GEQIMMRMLASLSRVDQTRIRTGQLDDEDWARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDY 344 (471)
T ss_pred HHHHHHHHHHHhcCCCHHHhhcCCCCHHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEcc
Confidence 654 22222222211 12222 2357889999999887765 699999999
Q ss_pred hhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccc--------ccchhhhhhhccC
Q 024152 206 VAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFS--------INLNKIIDESSGH 270 (271)
Q Consensus 206 l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~--------~~~~~~l~~s~~~ 270 (271)
|+.+..... ..++..+++.+++.||.+|+|++||||+++|++. +|.++++++| |.
T Consensus 345 Lqli~~~~~---------~~~r~~ei~~isr~LK~lAkel~ipVi~LsQLnR~~e~r~dkrP~lsDLreS-G~ 407 (471)
T PRK08006 345 LQLMRVPSL---------SDNRTLEIAEISRSLKALAKELQVPVVALSQLNRSLEQRADKRPVNSDLRES-GS 407 (471)
T ss_pred HHHccCCCC---------CCCcHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccCCCCCchhhhhhc-Cc
Confidence 999853110 0145568999999999999999999999999994 4788999997 54
No 3
>PRK08760 replicative DNA helicase; Provisional
Probab=100.00 E-value=5e-35 Score=275.18 Aligned_cols=240 Identities=17% Similarity=0.218 Sum_probs=193.1
Q ss_pred hhhhhhhhhhhhhhhcCCCCCCCCcccccccccccccccccccccccccCCCCCCc--cccCcchHHHHHHHHHHHHHHh
Q 024152 2 ASLLRNASLLRRCLLSVSPPHPHPQSFRGGMLETSTQICNFSSKSKRKSKSDGSDS--GEENMSKKDLALQQALDQITSS 79 (271)
Q Consensus 2 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~ 79 (271)
|+||+|++++|+++.+ +.++...++..+..+++++++.+++.++++.+.. ...++..+.+++.++++.+++.
T Consensus 129 a~iV~e~~~~R~li~~------~~~~~~~~~~~~~~~~~~~l~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (476)
T PRK08760 129 AEIVRDKAVLRQLIEV------GTTIVNDGFQPEGRESIELLASAEKAVFKIAEAGARGRTDFVAMPGALKDAFEELRNR 202 (476)
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHhccccccCCceeHHHHHHHHHHHHHHH
Confidence 7899999999999998 8888888876653478999999999999998653 2346778889999999999887
Q ss_pred cCCCceeeccccCCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEcCCCC
Q 024152 80 FGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHA 158 (271)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~-~g~v~~~~~e~~ 158 (271)
+.++. ...|+||||.+||.+++ ||++|++++|+|+||+|||+|+++++.+++.. +.+|+||+.|++
T Consensus 203 ~~~~~-----------~~~Gi~TG~~~LD~~t~--G~~~G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs 269 (476)
T PRK08760 203 FENGG-----------NITGLPTGYNDFDAMTA--GLQPTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMS 269 (476)
T ss_pred HhCCC-----------CCCcccCCcHHHHHHhc--CCCCCceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCC
Confidence 66443 67899999999999998 89999999999999999999999999998854 568999999998
Q ss_pred CCHH----HHHHcCCcCCc-------------------------ceec--CCCCHHHHHHHHHHHHhcCCccEEEEcchh
Q 024152 159 LDPS----LAETIGVKTEN-------------------------LLLA--QPDCGEQALSLVDTLIRSGSVDVVVVDSVA 207 (271)
Q Consensus 159 ~~~~----~~~~~g~~~~~-------------------------~~~~--~~~~~~e~~~~~~~l~~~~~~~lvvID~l~ 207 (271)
..+. ++...+++.++ +.+. ...+.+++++.+++++.++++++||||||+
T Consensus 270 ~~ql~~Rl~a~~s~i~~~~i~~g~l~~~e~~~~~~a~~~l~~~~l~I~d~~~~t~~~I~~~~r~l~~~~~~~lVvIDyLq 349 (476)
T PRK08760 270 ASQLAMRLISSNGRINAQRLRTGALEDEDWARVTGAIKMLKETKIFIDDTPGVSPEVLRSKCRRLKREHDLGLIVIDYLQ 349 (476)
T ss_pred HHHHHHHHHHhhCCCcHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 6542 22222222211 1222 235688999999999888889999999999
Q ss_pred hhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccc--------ccchhhhhhhccC
Q 024152 208 ALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFS--------INLNKIIDESSGH 270 (271)
Q Consensus 208 ~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~--------~~~~~~l~~s~~~ 270 (271)
.+... +. ..++..+++++++.||.+|++++||||+++|++. .|.+++|++| |.
T Consensus 350 l~~~~-------~~--~~~r~~ei~~Isr~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLreS-g~ 410 (476)
T PRK08760 350 LMSVP-------GN--SENRATEISEISRSLKGLAKELNVPVIALSQLNRSLETRTDKRPVMADLRES-GA 410 (476)
T ss_pred hcCCC-------CC--CcccHHHHHHHHHHHHHHHHHhCCEEEEeeccCccccccCCCCCCHHHHhhc-cc
Confidence 88521 11 1245578899999999999999999999999983 5788999987 53
No 4
>PRK08840 replicative DNA helicase; Provisional
Probab=100.00 E-value=9.9e-35 Score=272.03 Aligned_cols=241 Identities=16% Similarity=0.159 Sum_probs=191.6
Q ss_pred hhhhhhhhhhhhhhhcCCCCCCCCcccccccccccccccccccccccccCCCCCCccc--cCcchHHHHHHHHHHHHHHh
Q 024152 2 ASLLRNASLLRRCLLSVSPPHPHPQSFRGGMLETSTQICNFSSKSKRKSKSDGSDSGE--ENMSKKDLALQQALDQITSS 79 (271)
Q Consensus 2 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~ 79 (271)
|+||+++|++|+++.. +.++...+++++..+++++++.+|..++++.+.... .++..+.+++.++++.+++.
T Consensus 116 a~iVke~s~~R~li~~------~~~~~~~~~~~~~~~~~~~l~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 189 (464)
T PRK08840 116 ADIVAERALVRNLIGV------ANEIADAGYDPQGRTSEDLLDMAESKVFAIAEARTSENEGPQNVDSILEKTLERIELL 189 (464)
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhccCcCCCCceeHHHHHHHHHHHHHHH
Confidence 7899999999999998 888888887665347999999999999999876433 46777888999999999876
Q ss_pred cCCCceeeccccCCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEcCCCC
Q 024152 80 FGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHA 158 (271)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~-~g~v~~~~~e~~ 158 (271)
+..+. ..++|+||||++||.+++ ||++|++++|+|+||+|||+|+++++.+++.. +.+|+||+.|++
T Consensus 190 ~~~~~----------~~~~gi~TG~~~LD~~~~--G~~~g~LiviaarPg~GKTafalnia~~~a~~~~~~v~~fSlEMs 257 (464)
T PRK08840 190 YKTPQ----------DGVTGVDTGFTDLNKKTA--GLQGSDLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMP 257 (464)
T ss_pred HhcCC----------CCCCCcCCCcHHHHHhhc--CCCCCceEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEeccCC
Confidence 53211 157899999999999998 99999999999999999999999999999854 568999999988
Q ss_pred CCHH----HHHHcCCcCC--------------------------cceec--CCCCHHHHHHHHHHHHhcC-CccEEEEcc
Q 024152 159 LDPS----LAETIGVKTE--------------------------NLLLA--QPDCGEQALSLVDTLIRSG-SVDVVVVDS 205 (271)
Q Consensus 159 ~~~~----~~~~~g~~~~--------------------------~~~~~--~~~~~~e~~~~~~~l~~~~-~~~lvvID~ 205 (271)
..+. ++...++... .+++. ...+..++++.+++++.++ ++++|+|||
T Consensus 258 ~~ql~~Rlla~~s~v~~~~i~~~~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~~~~~~~lvvIDY 337 (464)
T PRK08840 258 AEQLMMRMLASLSRVDQTKIRTGQLDDEDWARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIAREHGGLSMIMVDY 337 (464)
T ss_pred HHHHHHHHHHhhCCCCHHHHhcCCCCHHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEcc
Confidence 6542 2332233221 12222 2356789999999987665 589999999
Q ss_pred hhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccc--------ccchhhhhhhccC
Q 024152 206 VAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFS--------INLNKIIDESSGH 270 (271)
Q Consensus 206 l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~--------~~~~~~l~~s~~~ 270 (271)
|+.+... +. ..++.+++..+++.||.+|+|++||||+++|++. +|.+++|++| |+
T Consensus 338 Lql~~~~-------~~--~~~r~~ei~~isr~LK~lAkel~ipVi~LsQLnR~~e~r~~krP~lsDLreS-G~ 400 (464)
T PRK08840 338 LQLMRVP-------AL--SDNRTLEIAEISRSLKALAKELNVPVVALSQLNRSLEQRADKRPVNSDLRES-GS 400 (464)
T ss_pred HHhcCCC-------CC--CCchHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccCCCCCchHhhhhc-cc
Confidence 9998521 11 1245678999999999999999999999999974 4788999997 54
No 5
>PRK05636 replicative DNA helicase; Provisional
Probab=100.00 E-value=1.5e-34 Score=272.99 Aligned_cols=238 Identities=18% Similarity=0.181 Sum_probs=192.5
Q ss_pred hhhhhhhhhhhhhhhcCCCCCCCCccccccccccc-ccccccccccccccCCCCCCccccCcchHHHHHHHHHHHHHHhc
Q 024152 2 ASLLRNASLLRRCLLSVSPPHPHPQSFRGGMLETS-TQICNFSSKSKRKSKSDGSDSGEENMSKKDLALQQALDQITSSF 80 (271)
Q Consensus 2 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (271)
|+||+|++++|+++.+ +.++...++.... .+++++++.+|+.++.++......++..+.+++.++++.|++..
T Consensus 166 a~iVke~a~~R~li~~------~~~i~~~~~~~~~~~~~~~~i~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~i~~~~ 239 (505)
T PRK05636 166 AEIVSEKAVLRRLVDA------GTRVVQLGYEGDEGAEIDSVIDRAQQEVFAVSQKNQSEDYAVLADILDPTMDELEMLS 239 (505)
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHhcCcccCCHHHHHHHHHHHHHHHhhccCCCCceeHHHHHHHHHHHHHHHH
Confidence 7899999999999998 8888888876542 37899999999999999877666678888999999999998765
Q ss_pred CCCceeeccccCCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh-cCCeEEEEcCCCCC
Q 024152 81 GKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR-QGGYCVFIDAEHAL 159 (271)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~-~~g~v~~~~~e~~~ 159 (271)
..+. ...|+||||.+||.+++ ||++|++++|+|+||+|||+|+++++.+++. .+.+|+||+.|++.
T Consensus 240 ~~~~-----------~~~Gi~TG~~~LD~~t~--Gl~~G~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~ 306 (505)
T PRK05636 240 SQGG-----------IATGIPTGFKDLDDLTN--GLRGGQMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSK 306 (505)
T ss_pred hCCC-----------CCCceecChHHHhhhcC--CCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCH
Confidence 4332 56899999999999997 9999999999999999999999999999875 45689999999986
Q ss_pred CHH----HHHHcCCcCC-------------------------cceec--CCCCHHHHHHHHHHHHhcCCccEEEEcchhh
Q 024152 160 DPS----LAETIGVKTE-------------------------NLLLA--QPDCGEQALSLVDTLIRSGSVDVVVVDSVAA 208 (271)
Q Consensus 160 ~~~----~~~~~g~~~~-------------------------~~~~~--~~~~~~e~~~~~~~l~~~~~~~lvvID~l~~ 208 (271)
.+. ++...++... .+++. ...+..++++.+++++.++++++|+||||+.
T Consensus 307 ~ql~~R~ls~~s~v~~~~i~~g~l~~~e~~~~~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~~~~lvvIDYLql 386 (505)
T PRK05636 307 SEIVMRLLSAEAEVRLSDMRGGKMDEDAWEKLVQRLGKIAQAPIFIDDSANLTMMEIRSKARRLKQKHDLKLIVVDYLQL 386 (505)
T ss_pred HHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHh
Confidence 542 2222222221 12222 2356789999999998888899999999999
Q ss_pred hcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcccc--------cccchhhhhhh
Q 024152 209 LVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVF--------SINLNKIIDES 267 (271)
Q Consensus 209 ~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~--------~~~~~~~l~~s 267 (271)
+.+. . ...++.+++.++++.||.+|+|++||||+++|++ .+|.+++|++|
T Consensus 387 ~~~~--------~-~~~~r~~ei~~isr~LK~lAkel~ipVi~lsQLnR~~e~r~dkrP~lsDLreS 444 (505)
T PRK05636 387 MSSG--------K-RVESRQQEVSEFSRQLKLLAKELDVPLIAISQLNRGPESRTDKRPQLADLRES 444 (505)
T ss_pred cCCC--------C-CCCcHHHHHHHHHHHHHHHHHHhCCeEEEEeecCccccccCCCCCcHHHHhhc
Confidence 8531 1 0124557899999999999999999999999998 35788899987
No 6
>PRK06904 replicative DNA helicase; Validated
Probab=100.00 E-value=2.1e-34 Score=270.54 Aligned_cols=242 Identities=17% Similarity=0.179 Sum_probs=189.7
Q ss_pred hhhhhhhhhhhhhhhcCCCCCCCCcccccccccccccccccccccccccCCCCCCccc--cCcchHHHHHHHHHHHHHHh
Q 024152 2 ASLLRNASLLRRCLLSVSPPHPHPQSFRGGMLETSTQICNFSSKSKRKSKSDGSDSGE--ENMSKKDLALQQALDQITSS 79 (271)
Q Consensus 2 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~ 79 (271)
|+||++++++|+++.. +.++...++..+..+++++++.++..++++.+.... .++..+.+++.++++.+++.
T Consensus 119 a~iVke~~~~R~li~~------~~~~~~~~~~~~~~~~~~~l~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 192 (472)
T PRK06904 119 ADIVREKAILRELISV------GNNIAKNAYSPKGQDIKDILDEAERDVFSIAEKRTTANEGPQNVINLLENTIDKIENL 192 (472)
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHhhcCccCCHHHHHHHHHHHHHHHHhhcccccCCceeHHHHHHHHHHHHHHH
Confidence 7899999999999998 888888887765347999999999999999765443 46778888999999988864
Q ss_pred cCCCceeeccccCCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEcCCCC
Q 024152 80 FGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHA 158 (271)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~-~g~v~~~~~e~~ 158 (271)
.... ......|+||||++||.+++ ||++|++++|+|+||||||+|+++++.+++.. +.+|+||+.|++
T Consensus 193 ~~~~---------~~~~~~Gi~TG~~~LD~~t~--Gl~~G~LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEMs 261 (472)
T PRK06904 193 AATP---------TNNGVTGVTTGFTDLDKKTA--GLQPSDLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMP 261 (472)
T ss_pred Hhhc---------cCCCCCCccCChHHHHHHHh--ccCCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCC
Confidence 3110 11267899999999999998 99999999999999999999999999999864 668999999988
Q ss_pred CCHH----HHHHcCCcCCc---------------------------ceecC--CCCHHHHHHHHHHHHhcC-CccEEEEc
Q 024152 159 LDPS----LAETIGVKTEN---------------------------LLLAQ--PDCGEQALSLVDTLIRSG-SVDVVVVD 204 (271)
Q Consensus 159 ~~~~----~~~~~g~~~~~---------------------------~~~~~--~~~~~e~~~~~~~l~~~~-~~~lvvID 204 (271)
..+. ++...+++..+ +++.+ ..+..++++.+++++.+. ++++|+||
T Consensus 262 ~~ql~~Rlla~~s~v~~~~i~~g~~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvID 341 (472)
T PRK06904 262 AEQIMMRMLASLSRVDQTKIRTGQNLDQQDWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVD 341 (472)
T ss_pred HHHHHHHHHHhhCCCCHHHhccCCCCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 6542 22222222111 22222 256788999998887654 69999999
Q ss_pred chhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccc--------ccchhhhhhhccC
Q 024152 205 SVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFS--------INLNKIIDESSGH 270 (271)
Q Consensus 205 ~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~--------~~~~~~l~~s~~~ 270 (271)
||+.+... .. ..++..+++++++.||.+|+|++||||+++|++. +|.+++|++| |.
T Consensus 342 YLqli~~~-~~--------~~~r~~ei~~isr~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLreS-G~ 405 (472)
T PRK06904 342 YLQLMRAP-GF--------EDNRTLEIAEISRSLKALAKELKVPVVALSQLNRTLENRGDKRPVNSDLRES-GS 405 (472)
T ss_pred cHHhcCCC-CC--------CCcHHHHHHHHHHHHHHHHHHhCCeEEEEEecCchhhccCCCCCchHHHhhc-Cc
Confidence 99998631 11 1145568899999999999999999999999973 5788999997 54
No 7
>PRK07004 replicative DNA helicase; Provisional
Probab=100.00 E-value=1.4e-34 Score=271.32 Aligned_cols=242 Identities=16% Similarity=0.184 Sum_probs=191.7
Q ss_pred hhhhhhhhhhhhhhhcCCCCCCCCcccccccccccccccccccccccccCCCCCCcc--ccCcchHHHHHHHHHHHHHHh
Q 024152 2 ASLLRNASLLRRCLLSVSPPHPHPQSFRGGMLETSTQICNFSSKSKRKSKSDGSDSG--EENMSKKDLALQQALDQITSS 79 (271)
Q Consensus 2 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~ 79 (271)
|+||+++|++|++++. +.++...++..+..+++++++.+++.++++.+... ..++..+.+++.++++.+++.
T Consensus 111 a~iV~e~~~~R~li~~------~~~i~~~~~~~~~~~~~~~l~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 184 (460)
T PRK07004 111 AEIVRDRAVLRRLVSV------ADEISADAFNPQGKEVRQLLDEAESKVFSIAEEGARGTQGFLEIGPLLTQVVERIDTL 184 (460)
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHhhccCcCCHHHHHHHHHHHHHHHHcccCcCcCcchhHHHHHHHHHHHHHHH
Confidence 7899999999999998 88888888766534789999999999999986542 246778889999999999876
Q ss_pred cCCCceeeccccCCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh-cCCeEEEEcCCCC
Q 024152 80 FGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR-QGGYCVFIDAEHA 158 (271)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~-~~g~v~~~~~e~~ 158 (271)
+.... .....|+|||+.+||.+++ ||++|++++|+|+||||||+|+++++.+++. .+.+|+||+.|++
T Consensus 185 ~~~~~---------~~~~~gi~TG~~~LD~~t~--G~~~g~liviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM~ 253 (460)
T PRK07004 185 YHTAN---------PSDVTGTPTGFVDLDRMTS--GMHGGELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMP 253 (460)
T ss_pred Hhccc---------cCCCCCccCCcHHhccccc--CCCCCceEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 54311 1257899999999999998 9999999999999999999999999998875 5668999999998
Q ss_pred CCHH----HHHHcCCcCCc-------------------------ceec--CCCCHHHHHHHHHHHHhcC-CccEEEEcch
Q 024152 159 LDPS----LAETIGVKTEN-------------------------LLLA--QPDCGEQALSLVDTLIRSG-SVDVVVVDSV 206 (271)
Q Consensus 159 ~~~~----~~~~~g~~~~~-------------------------~~~~--~~~~~~e~~~~~~~l~~~~-~~~lvvID~l 206 (271)
..+. ++...+++.++ +.+. +..+..++++.+++++.+. ++++|+||||
T Consensus 254 ~~ql~~R~la~~~~v~~~~i~~g~l~~~e~~~~~~a~~~l~~~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviIDYL 333 (460)
T PRK07004 254 GTQLAMRMLGSVGRLDQHRMRTGRLTDEDWPKLTHAVQKMSEAQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYL 333 (460)
T ss_pred HHHHHHHHHHhhcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEChh
Confidence 7642 22222333221 1221 2346778999999987664 5899999999
Q ss_pred hhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcccc--------cccchhhhhhhccC
Q 024152 207 AALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVF--------SINLNKIIDESSGH 270 (271)
Q Consensus 207 ~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~--------~~~~~~~l~~s~~~ 270 (271)
+.+.+.. ...++.++++.+++.||.+|+|++||||++||++ .+|.+++|++| |+
T Consensus 334 ql~~~~~---------~~~~r~~ei~~Isr~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLreS-g~ 395 (460)
T PRK07004 334 QLMSGSS---------QGENRATEISEISRSLKSLAKELDVPVIALSQLNRGLEQRPNKRPVMSDLRES-GA 395 (460)
T ss_pred hhccCCC---------CCCcHHHHHHHHHHHHHHHHHHhCCeEEEEeccChhhhccCCCCCChHHHhcc-hh
Confidence 9996311 0124667899999999999999999999999997 35788999997 53
No 8
>PRK06321 replicative DNA helicase; Provisional
Probab=100.00 E-value=3.7e-34 Score=268.46 Aligned_cols=247 Identities=14% Similarity=0.127 Sum_probs=187.7
Q ss_pred hhhhhhhhhhhhhhhcCCCCCCCCcccccccccccccccccccccccccCCCCCCccccCcchHHHHHHH----------
Q 024152 2 ASLLRNASLLRRCLLSVSPPHPHPQSFRGGMLETSTQICNFSSKSKRKSKSDGSDSGEENMSKKDLALQQ---------- 71 (271)
Q Consensus 2 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 71 (271)
|+||+|++++|++++. +.++...+++.+ .+++++++.++..++++++.....++..+.+++.+
T Consensus 112 a~iV~e~~~~R~li~~------~~~~~~~~~~~~-~~~~~~l~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (472)
T PRK06321 112 AEIIRSKSILRKMIQT------AKEIEKKALEEP-KDVATALDEAQNLLFKISQTTNLAQYVLVADKLKGLTSSKDKPFL 184 (472)
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHhhcCC-CCHHHHHHHHHHHHHHHHhccCCCCceEHHHHHhhhhcchhhhHH
Confidence 7899999999999998 888888887665 48999999999999999877666667667666443
Q ss_pred --HHHHHHHhcCCCceeeccccCCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh-cCC
Q 024152 72 --ALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR-QGG 148 (271)
Q Consensus 72 --~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~-~~g 148 (271)
+.+.++........ .......|+||||.+||.+++ ||++|++++|+|+||||||+|+++++.+++. .+.
T Consensus 185 ~~~~~~~~~~~~~~~~------~~~~~~~Gi~tG~~~LD~~t~--Gl~~G~LiiiaarPgmGKTafal~ia~~~a~~~g~ 256 (472)
T PRK06321 185 LQLQERQEAFQQSAQG------DSSPMISGIPTHFIDLDKMIN--GFSPSNLMILAARPAMGKTALALNIAENFCFQNRL 256 (472)
T ss_pred HHHHHHHHHHhhhhcc------ccCCCCCccccCcHHHHHHhc--CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCC
Confidence 23333321110000 012257899999999999998 9999999999999999999999999999885 466
Q ss_pred eEEEEcCCCCCCH----HHHHHcCCcCCcc-------------------------eec--CCCCHHHHHHHHHHHHhcCC
Q 024152 149 YCVFIDAEHALDP----SLAETIGVKTENL-------------------------LLA--QPDCGEQALSLVDTLIRSGS 197 (271)
Q Consensus 149 ~v~~~~~e~~~~~----~~~~~~g~~~~~~-------------------------~~~--~~~~~~e~~~~~~~l~~~~~ 197 (271)
+|+||+.|++..+ .++...+++.+++ .+. ...+..++++.+++++.+++
T Consensus 257 ~v~~fSLEMs~~ql~~Rlla~~s~v~~~~i~~~~l~~~e~~~~~~a~~~l~~~~~~idd~~~~ti~~i~~~~r~~~~~~~ 336 (472)
T PRK06321 257 PVGIFSLEMTVDQLIHRIICSRSEVESKKISVGDLSGRDFQRIVSVVNEMQEHTLLIDDQPGLKITDLRARARRMKESYD 336 (472)
T ss_pred eEEEEeccCCHHHHHHHHHHhhcCCCHHHhhcCCCCHHHHHHHHHHHHHHHcCCEEEeCCCCCCHHHHHHHHHHHHHhcC
Confidence 8999999998654 2233333333221 111 23467899999999888888
Q ss_pred ccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcccc--------cccchhhhhhhcc
Q 024152 198 VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVF--------SINLNKIIDESSG 269 (271)
Q Consensus 198 ~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~--------~~~~~~~l~~s~~ 269 (271)
+++|+||||+.+...... ....++.+++..+++.||.+|+|++||||+++|+. .+|.++++++| |
T Consensus 337 ~~lvvIDyLql~~~~~~~------~~~~~r~~ei~~Isr~LK~lAkel~vpVi~lsQLnR~~e~r~~krP~lsDLReS-G 409 (472)
T PRK06321 337 IQFLIIDYLQLLSGSGNL------RNSESRQTEISEISRMLKNLARELNIPILCLSQLSRKVEDRANHRPMMSDLRES-G 409 (472)
T ss_pred CCEEEEcchHHcCCCCcc------CCcchHHHHHHHHHHHHHHHHHHhCCcEEEEeecChhhhccCCCCCCHHHHhhc-c
Confidence 999999999998531110 01125667899999999999999999999999996 36888999997 5
Q ss_pred C
Q 024152 270 H 270 (271)
Q Consensus 270 ~ 270 (271)
.
T Consensus 410 ~ 410 (472)
T PRK06321 410 S 410 (472)
T ss_pred c
Confidence 4
No 9
>PRK09165 replicative DNA helicase; Provisional
Probab=100.00 E-value=4.4e-34 Score=270.32 Aligned_cols=240 Identities=18% Similarity=0.198 Sum_probs=192.6
Q ss_pred hhhhhhhhhhhhhhhcCCCCCCCCccccccccccc-ccccccccccccccCCCCCCc-cccCcchHHHHHHHHHHHHHHh
Q 024152 2 ASLLRNASLLRRCLLSVSPPHPHPQSFRGGMLETS-TQICNFSSKSKRKSKSDGSDS-GEENMSKKDLALQQALDQITSS 79 (271)
Q Consensus 2 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~ 79 (271)
|+||++++++|+++.. +.++...++..+. .++.++++.+++.++++.+.. ...++..+.+++.++++.+++.
T Consensus 117 a~iV~e~~~~R~li~~------~~~i~~~a~~~~~~~~~~~~i~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (497)
T PRK09165 117 GRIIYDLALRRELINI------GEDVVNNAYDAPVDVAPQEQIEDAEQKLYELAETGRYEGGFQSFGTAITEAVDMANAA 190 (497)
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHhcCccCCCHHHHHHHHHHHHHHHHhccCCCCCceeHHHHHHHHHHHHHHH
Confidence 7899999999999998 8888888876542 368999999999999998754 3457888889999999998876
Q ss_pred cCCCceeeccccCCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhc-------------
Q 024152 80 FGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ------------- 146 (271)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~------------- 146 (271)
+.+.. ...|+||||++||.+++ ||++|++++|+|+||+|||||+++++.+++..
T Consensus 191 ~~~~~-----------~~~gi~TG~~~LD~~~g--G~~~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~ 257 (497)
T PRK09165 191 FKRDG-----------HLSGISTGLRDLDSKLG--GLHPSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKA 257 (497)
T ss_pred HhCCC-----------CCCcccCChHHHhhhcC--CCCCCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccc
Confidence 55332 67899999999999997 99999999999999999999999999998753
Q ss_pred --CCeEEEEcCCCCCCHH----HHHHcCCcCCcc-------------------------eec--CCCCHHHHHHHHHHHH
Q 024152 147 --GGYCVFIDAEHALDPS----LAETIGVKTENL-------------------------LLA--QPDCGEQALSLVDTLI 193 (271)
Q Consensus 147 --~g~v~~~~~e~~~~~~----~~~~~g~~~~~~-------------------------~~~--~~~~~~e~~~~~~~l~ 193 (271)
+.+|+||+.|++..+. ++...+++.+++ .+. ...+..++.+.+++++
T Consensus 258 ~~g~~vl~fSlEMs~~ql~~R~la~~s~v~~~~i~~~~l~~~e~~~l~~a~~~l~~~~l~I~d~~~~ti~~i~~~ir~l~ 337 (497)
T PRK09165 258 VNGGVVGFFSLEMSAEQLATRILSEQSEISSSKIRRGKISEEDFEKLVDASQELQKLPLYIDDTPALSISQLRARARRLK 337 (497)
T ss_pred cCCCeEEEEeCcCCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCCHHHHHHHHHHHH
Confidence 4689999999987652 334445543321 111 2356889999999988
Q ss_pred hcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccc--------ccchhhhh
Q 024152 194 RSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFS--------INLNKIID 265 (271)
Q Consensus 194 ~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~--------~~~~~~l~ 265 (271)
.++++++|+||||+.+..... ....++.+++..+++.||.+|++++||||+++|++. +|.+++|+
T Consensus 338 ~~~~~~lvvIDyLqli~~~~~-------~~~~~r~~ev~~is~~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLr 410 (497)
T PRK09165 338 RQHGLDLLVVDYLQLIRGSSK-------RSSDNRVQEISEITQGLKALAKELNIPVIALSQLSRQVEQRDDKRPQLSDLR 410 (497)
T ss_pred HhcCCCEEEEcchHhccCCCC-------CCCCchHHHHHHHHHHHHHHHHHhCCeEEEeecccchhhccCCCCCchhhhh
Confidence 888899999999998863111 001245567999999999999999999999999983 57888999
Q ss_pred hh
Q 024152 266 ES 267 (271)
Q Consensus 266 ~s 267 (271)
+|
T Consensus 411 ~S 412 (497)
T PRK09165 411 ES 412 (497)
T ss_pred hc
Confidence 87
No 10
>PRK05595 replicative DNA helicase; Provisional
Probab=100.00 E-value=1e-33 Score=265.33 Aligned_cols=239 Identities=18% Similarity=0.212 Sum_probs=193.3
Q ss_pred hhhhhhhhhhhhhhhcCCCCCCCCcccccccccccccccccccccccccCCCCCCccccCcchHHHHHHHHHHHHHHhcC
Q 024152 2 ASLLRNASLLRRCLLSVSPPHPHPQSFRGGMLETSTQICNFSSKSKRKSKSDGSDSGEENMSKKDLALQQALDQITSSFG 81 (271)
Q Consensus 2 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 81 (271)
|++|++++++|+++.. +.++...++.... +++++++.+|.+++++++.....++..+.+++.+.++.+++.+.
T Consensus 104 a~iVke~~~~R~l~~~------~~~~~~~~~~~~~-~~~~~l~~~e~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 176 (444)
T PRK05595 104 IKIVKDKSTLRRLIKS------STEIIENSYNNQD-DVEKVIDSAEKKIFDISEKRTTSDFEPLSNVLERGFEQIENLFN 176 (444)
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHhccCC-CHHHHHHHHHHHHHHHHhccCCccceeHHHHHHHHHHHHHHHHh
Confidence 6899999999999997 7777777665544 78999999999999998776666788889999999999988766
Q ss_pred CCceeeccccCCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHh-hcCCeEEEEcCCCCCC
Q 024152 82 KGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQ-RQGGYCVFIDAEHALD 160 (271)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~-~~~g~v~~~~~e~~~~ 160 (271)
++. ...|+|||++.||.+++ ||++|++++|+|+||+|||+|+++++.+++ ..+.+|+||+.|++..
T Consensus 177 ~~~-----------~~~gi~tg~~~ld~~~~--G~~~g~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~~ 243 (444)
T PRK05595 177 NKG-----------ETTGVASGFRELDAKTS--GFQKGDMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKE 243 (444)
T ss_pred CCC-----------CCCcccCChHHHHHhcC--CCCCCcEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCHH
Confidence 433 67899999999999997 999999999999999999999999999876 4566899999998865
Q ss_pred H----HHHHHcCCcCCcc-------------------------eec--CCCCHHHHHHHHHHHHhcCCccEEEEcchhhh
Q 024152 161 P----SLAETIGVKTENL-------------------------LLA--QPDCGEQALSLVDTLIRSGSVDVVVVDSVAAL 209 (271)
Q Consensus 161 ~----~~~~~~g~~~~~~-------------------------~~~--~~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~ 209 (271)
+ .++...+++..++ .+. ...+..++++.+++++.++++++|+||||+.+
T Consensus 244 ~l~~R~~a~~~~v~~~~~~~~~l~~~e~~~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~vvIDylql~ 323 (444)
T PRK05595 244 QLAYKLLCSEANVDMLRLRTGNLEDKDWENIARASGPLAAAKIFIDDTAGVSVMEMRSKCRRLKIEHGIDMILIDYLQLM 323 (444)
T ss_pred HHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEeHHHhc
Confidence 4 2333344443221 121 23467889999999887788999999999998
Q ss_pred cCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccc--------ccchhhhhhhccC
Q 024152 210 VPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFS--------INLNKIIDESSGH 270 (271)
Q Consensus 210 ~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~--------~~~~~~l~~s~~~ 270 (271)
.... ...++..++..+++.||.+|+|++|||++++|++. +|.++++++| |+
T Consensus 324 ~~~~---------~~~~r~~~v~~is~~LK~lAke~~i~vi~lsQLnR~~e~r~~~rP~lsdlr~S-g~ 382 (444)
T PRK05595 324 SGGK---------GSESRQQEVSEISRSIKALAKEMECPVIALSQLSRAPEQRADHRPMLSDLRES-GS 382 (444)
T ss_pred cCCC---------CCccHHHHHHHHHHHHHHHHHHhCCeEEEeeccCcchhccCCCCCchhhhhhh-cc
Confidence 6311 11245578899999999999999999999999983 4788899997 54
No 11
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=100.00 E-value=1.5e-33 Score=262.82 Aligned_cols=239 Identities=21% Similarity=0.252 Sum_probs=192.2
Q ss_pred hhhhhhhhhhhhhhhcCCCCCCCCcccccccccccccccccccccccccCCCC--CCccccCcchHHHHHHHHHHHHHHh
Q 024152 2 ASLLRNASLLRRCLLSVSPPHPHPQSFRGGMLETSTQICNFSSKSKRKSKSDG--SDSGEENMSKKDLALQQALDQITSS 79 (271)
Q Consensus 2 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~ 79 (271)
|++|+|++++|+++.. +.++...++..+..+++++++.++..++++. +...+.++..+.+.+.++++.+++.
T Consensus 94 a~~v~e~~~~R~l~~~------~~~i~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (421)
T TIGR03600 94 ARIVREKAKERKLIAA------CQRIIDLACSDGGQTAEQKVEEAQAALLALTGMSDGQERGFVTFGEVLEDVVRDLDKR 167 (421)
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHhccCCCCHHHHHHHHHHHHHHhhhhhccCcCCchhHHHHHHHHHHHHHHH
Confidence 6899999999999998 7888777766553479999999999999997 5555667778899999999999886
Q ss_pred cCCCceeeccccCCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHh-hcCCeEEEEcCCCC
Q 024152 80 FGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQ-RQGGYCVFIDAEHA 158 (271)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~-~~~g~v~~~~~e~~ 158 (271)
..+.. ...|+|||++.||.+++ ||++|++++|+|+||+|||+|+++++.+++ ..+.+|+||+.|++
T Consensus 168 ~~~~~-----------~~~gi~tG~~~LD~~~~--G~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~ 234 (421)
T TIGR03600 168 FNPKG-----------ELTGLSTGLPKLDRLTN--GLVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMS 234 (421)
T ss_pred hcCCC-----------CCcceeCCChhHHHHhc--CCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 55332 57899999999999998 999999999999999999999999999888 45668999999987
Q ss_pred CCH----HHHHHcCCcCCc-------------------------ceecC--CCCHHHHHHHHHHHHhcC-CccEEEEcch
Q 024152 159 LDP----SLAETIGVKTEN-------------------------LLLAQ--PDCGEQALSLVDTLIRSG-SVDVVVVDSV 206 (271)
Q Consensus 159 ~~~----~~~~~~g~~~~~-------------------------~~~~~--~~~~~e~~~~~~~l~~~~-~~~lvvID~l 206 (271)
..+ .++...+++.+. +.+.+ ..+.+++++.++++..++ ++++||||||
T Consensus 235 ~~~l~~Rl~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDyL 314 (421)
T TIGR03600 235 AEQLGERLLASKSGINTGNIRTGRFNDSDFNRLLNAVDRLSEKDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYI 314 (421)
T ss_pred HHHHHHHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 654 333344544321 22222 257889999999887665 7999999999
Q ss_pred hhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccc--------ccchhhhhhhccC
Q 024152 207 AALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFS--------INLNKIIDESSGH 270 (271)
Q Consensus 207 ~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~--------~~~~~~l~~s~~~ 270 (271)
+.+.+. . +. .+..++..+++.||.+|++++||||+++|++. +|.++++++| |+
T Consensus 315 ql~~~~-~-----~~----~~~~~~~~i~~~Lk~lAke~~i~Vi~lsQlnr~~~~r~~krp~lsdlr~S-g~ 375 (421)
T TIGR03600 315 QLMAPT-R-----GR----DRNEELGGISRGLKALAKELDVPVVLLAQLNRGSEKRTDKRPIMSDLRDS-GA 375 (421)
T ss_pred cccCCC-C-----CC----CHHHHHHHHHHHHHHHHHHhCCcEEEecccCcchhhcCCCCCChHHHhhc-CC
Confidence 998631 0 11 34467889999999999999999999999973 4778899987 43
No 12
>PRK08506 replicative DNA helicase; Provisional
Probab=100.00 E-value=1.1e-33 Score=266.27 Aligned_cols=238 Identities=18% Similarity=0.191 Sum_probs=191.7
Q ss_pred hhhhhhhhhhhhhhhcCCCCCCCCcccccccccccccccccccccccccCCCCCCccccCcchHHHHHHHHHHHHHHhcC
Q 024152 2 ASLLRNASLLRRCLLSVSPPHPHPQSFRGGMLETSTQICNFSSKSKRKSKSDGSDSGEENMSKKDLALQQALDQITSSFG 81 (271)
Q Consensus 2 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 81 (271)
|+||++++++|++++. +.++...++.... +++++++.++..++++.+.....++..+.+++.++++.+++...
T Consensus 94 a~iV~e~~~~R~li~~------~~~i~~~~~~~~~-~~~~~l~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 166 (472)
T PRK08506 94 VEEIKEKSIKRELLSL------ANTIPEQAVEEDQ-KSSDILDEVERELYSITNGSNSEDFKDSKEVIESTMEHIKKQKR 166 (472)
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhhcccccCcccHHHHHHHHHHHHHHHHh
Confidence 7899999999999998 8888887776654 89999999999999998776667788889999999998887543
Q ss_pred CCceeeccccCCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCH
Q 024152 82 KGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP 161 (271)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~ 161 (271)
.+. ....|+||||+.||.+++ ||++|++++|+|+||+|||+|+++++.+++..+.+|+||+.|++..+
T Consensus 167 ~~~----------~~~~Gi~TG~~~LD~~~~--G~~~G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~~q 234 (472)
T PRK08506 167 LGN----------KDIIGLDTGFVELNKMTK--GFNKGDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPAEQ 234 (472)
T ss_pred cCC----------CCCCcccCChHHHHhhcC--CCCCCceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCHHH
Confidence 211 157899999999999997 99999999999999999999999999999877778999999988654
Q ss_pred ----HHHHHcCCcCCc-------------------------ceecC--CCCHHHHHHHHHHHHhcC-CccEEEEcchhhh
Q 024152 162 ----SLAETIGVKTEN-------------------------LLLAQ--PDCGEQALSLVDTLIRSG-SVDVVVVDSVAAL 209 (271)
Q Consensus 162 ----~~~~~~g~~~~~-------------------------~~~~~--~~~~~e~~~~~~~l~~~~-~~~lvvID~l~~~ 209 (271)
.++...+++.++ +.+.+ ..+..++++.++++..++ ++++|+||||+.+
T Consensus 235 l~~Rlla~~s~v~~~~i~~~~l~~~e~~~~~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~ 314 (472)
T PRK08506 235 LMLRMLSAKTSIPLQNLRTGDLDDDEWERLSDACDELSKKKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLM 314 (472)
T ss_pred HHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHHHHHHcCCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhc
Confidence 233333443322 22222 346889999999887654 6999999999988
Q ss_pred cCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccc--------ccchhhhhhh
Q 024152 210 VPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFS--------INLNKIIDES 267 (271)
Q Consensus 210 ~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~--------~~~~~~l~~s 267 (271)
.... . ...+..++..+++.||.+|++++||||+++|++. +|.++++++|
T Consensus 315 ~~~~-------~--~~~r~~ev~~isr~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLreS 371 (472)
T PRK08506 315 SGSG-------N--FKDRHLQISEISRGLKLLARELDIPIIALSQLNRSLESRADKRPMLSDLRES 371 (472)
T ss_pred cCCC-------C--CCCHHHHHHHHHHHHHHHHHHhCCcEEEEeecCcchhhccCCCCChHHhhcc
Confidence 6311 1 1135567889999999999999999999999973 5678899887
No 13
>PRK05748 replicative DNA helicase; Provisional
Probab=100.00 E-value=1.4e-32 Score=258.15 Aligned_cols=238 Identities=13% Similarity=0.159 Sum_probs=190.0
Q ss_pred hhhhhhhhhhhhhhhcCCCCCCCCcccccccccccccccccccccccccCCCCCCccccCcchHHHHHHHHHHHHHHhcC
Q 024152 2 ASLLRNASLLRRCLLSVSPPHPHPQSFRGGMLETSTQICNFSSKSKRKSKSDGSDSGEENMSKKDLALQQALDQITSSFG 81 (271)
Q Consensus 2 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 81 (271)
|++|++++++|+++.. +.++...++.... +++++++.+++.++++.+.....++.++.+.+.++++.++....
T Consensus 106 a~iVke~~~~R~l~~~------~~~~~~~~~~~~~-~~~~~~~~~~~~l~~i~~~~~~~~~~~i~~~~~~~~~~l~~~~~ 178 (448)
T PRK05748 106 AKIVAEKAMLRRLIRT------ATEIANDAYEPED-DADEILDEAEKKIFEVSERRNKSGFKNIKDVLVKAYDRIEMLHN 178 (448)
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHhhCCCC-CHHHHHHHHHHHHHHHhhccCccCCcCHHHHHHHHHHHHHHHHh
Confidence 6899999999999998 7788777776554 79999999999999998766556777888889999998887655
Q ss_pred CCceeeccccCCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEcCCCCCC
Q 024152 82 KGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHALD 160 (271)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~-~g~v~~~~~e~~~~ 160 (271)
... ...|+|||+++||.+++ ||++|++++|+|+||+|||+|+++++.+++.. +.+|+||+.|++..
T Consensus 179 ~~~-----------~~~gi~TG~~~LD~~~~--G~~~G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~~ 245 (448)
T PRK05748 179 QTG-----------DITGIPTGFTDLDKMTS--GLQPNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAE 245 (448)
T ss_pred cCC-----------CCCCccCChHHHHHhcC--CCCCCceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCHH
Confidence 332 67899999999999997 99999999999999999999999999998754 66899999999876
Q ss_pred HHH----HHHcCCcCCc-------------------------cee--cCCCCHHHHHHHHHHHHhcC-CccEEEEcchhh
Q 024152 161 PSL----AETIGVKTEN-------------------------LLL--AQPDCGEQALSLVDTLIRSG-SVDVVVVDSVAA 208 (271)
Q Consensus 161 ~~~----~~~~g~~~~~-------------------------~~~--~~~~~~~e~~~~~~~l~~~~-~~~lvvID~l~~ 208 (271)
+.. +...+++... +.+ ....+..++++.+++++.+. ++++|+||||+.
T Consensus 246 ~l~~R~l~~~~~v~~~~i~~~~l~~~e~~~~~~a~~~l~~~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~l 325 (448)
T PRK05748 246 SLVMRMLCAEGNIDAQRLRTGQLTDDDWPKLTIAMGSLSDAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQL 325 (448)
T ss_pred HHHHHHHHHhcCCCHHHhhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchh
Confidence 422 2222222211 111 12357789999999988776 799999999998
Q ss_pred hcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccc--------ccchhhhhhh
Q 024152 209 LVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFS--------INLNKIIDES 267 (271)
Q Consensus 209 ~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~--------~~~~~~l~~s 267 (271)
+.... . ...++.+++..+++.||.+|++++||||+++|+.. .|.++++++|
T Consensus 326 i~~~~-------~-~~~~r~~~i~~i~~~LK~lAke~~i~vi~lsQlnr~~~~r~~k~p~lsdlr~S 384 (448)
T PRK05748 326 IQGSG-------R-SGENRQQEVSEISRSLKALAKELKVPVIALSQLSRGVEQRQDKRPVMSDIRES 384 (448)
T ss_pred cCCCC-------C-CCcCHHHHHHHHHHHHHHHHHHhCCeEEEecccChhHhhcCCCCCChHHHHhh
Confidence 85211 0 01145578899999999999999999999999984 5678899987
No 14
>PRK07773 replicative DNA helicase; Validated
Probab=100.00 E-value=6.3e-33 Score=278.35 Aligned_cols=239 Identities=17% Similarity=0.193 Sum_probs=196.3
Q ss_pred hhhhhhhhhhhhhhhcCCCCCCCCcccccccccccccccccccccccccCCCCCCccccCcchHHHHHHHHHHHHHHhcC
Q 024152 2 ASLLRNASLLRRCLLSVSPPHPHPQSFRGGMLETSTQICNFSSKSKRKSKSDGSDSGEENMSKKDLALQQALDQITSSFG 81 (271)
Q Consensus 2 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 81 (271)
|+||+|++++|+++.+ +.++...++... .+++++++.+|+.++++++.....++.++.+++.++++.+++...
T Consensus 120 a~iV~e~s~~R~li~~------~~~i~~~a~~~~-~~~~~~l~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 192 (886)
T PRK07773 120 ARIVAEKALLRRLIEA------GTRIVQYGYAEG-ADVAEVVDRAQAEIYDVTDRRLSEDFVALEDLLQPTFDEIDAIAS 192 (886)
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHhhcCC-CCHHHHHHHHHHHHHHHhhccCcCCceeHHHHHHHHHHHHHHHHh
Confidence 7899999999999998 888888877655 489999999999999998877777888899999999999987655
Q ss_pred CCceeeccccCCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEcCCCCCC
Q 024152 82 KGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHALD 160 (271)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~-~g~v~~~~~e~~~~ 160 (271)
++. ..+|+|||++.||.+++ ||++|++++|+|+||||||+|+++++.+++.. +.+|+||+.|++..
T Consensus 193 ~~~-----------~~~Gi~TG~~~LD~l~~--Gl~~G~livIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~ 259 (886)
T PRK07773 193 SGG-----------LARGVPTGFTELDAMTN--GLHPGQLIIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKE 259 (886)
T ss_pred cCC-----------CCCCccCChhHhccccC--CCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHH
Confidence 433 67899999999999997 99999999999999999999999999999865 56899999999876
Q ss_pred HH----HHHHcCCcCCcc-------------------------eec--CCCCHHHHHHHHHHHHhcCCccEEEEcchhhh
Q 024152 161 PS----LAETIGVKTENL-------------------------LLA--QPDCGEQALSLVDTLIRSGSVDVVVVDSVAAL 209 (271)
Q Consensus 161 ~~----~~~~~g~~~~~~-------------------------~~~--~~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~ 209 (271)
+. ++...+++.+++ ++. ...+..++++.+++++++.++++|+||||+.+
T Consensus 260 ql~~R~~s~~~~i~~~~i~~g~l~~~~~~~~~~a~~~l~~~~i~i~d~~~~~i~~i~~~~r~~~~~~~~~lvvIDyLql~ 339 (886)
T PRK07773 260 QLVMRLLSAEAKIKLSDMRSGRMSDDDWTRLARAMGEISEAPIFIDDTPNLTVMEIRAKARRLRQEANLGLIVVDYLQLM 339 (886)
T ss_pred HHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEcchhhc
Confidence 52 233333332221 111 23567889999999888888999999999998
Q ss_pred cCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccc--------ccchhhhhhhccC
Q 024152 210 VPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFS--------INLNKIIDESSGH 270 (271)
Q Consensus 210 ~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~--------~~~~~~l~~s~~~ 270 (271)
.... ...++.+++.++++.||.+|+|++||||+++|++. +|.+++|++| |-
T Consensus 340 ~~~~---------~~~~r~~ei~~isr~LK~lAkel~vpvi~lsQLnR~~e~r~~krP~lsDlres-~~ 398 (886)
T PRK07773 340 TSGK---------KYENRQQEVSEISRHLKLLAKELEVPVVALSQLSRGVEQRTDKRPMLSDLRES-GC 398 (886)
T ss_pred CCCC---------CCCCHHHHHHHHHHHHHHHHHHHCCcEEEecccCcchhccCCCCCCHHHHhhc-Cc
Confidence 6310 11245678999999999999999999999999995 5789999997 53
No 15
>PRK06749 replicative DNA helicase; Provisional
Probab=99.97 E-value=4.8e-32 Score=251.95 Aligned_cols=232 Identities=15% Similarity=0.079 Sum_probs=178.2
Q ss_pred hhhhhhhhhhhhhhhcCCCCCCCCcccccccccccccccccccccccccCCCCCCccccCcchHHHHHHHHHHHHHHhcC
Q 024152 2 ASLLRNASLLRRCLLSVSPPHPHPQSFRGGMLETSTQICNFSSKSKRKSKSDGSDSGEENMSKKDLALQQALDQITSSFG 81 (271)
Q Consensus 2 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 81 (271)
|+||++++++|+++.. +.++...++.+ ++.++++.++..++.+.+.... +..++.+.+.+.++.+.+
T Consensus 95 a~~v~~~~~~R~~~~~------~~~~~~~~~~~---~~~~~i~~~~~~l~~i~~~~~~-~~~~~~~~~~~~~~~~~~--- 161 (428)
T PRK06749 95 EGLVRGAWKMYQAGVL------GHKMGERLIAE---KSEKIIGETITALCELEEKDCV-CEFDLKDALVDLYEELHQ--- 161 (428)
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHhhCC---CHHHHHHHHHHHHHHHHccCCC-CCccHHHHHHHHHHHHHh---
Confidence 7899999999999997 77766666543 5788999999999988765433 344677777777765532
Q ss_pred CCceeeccccCCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCH
Q 024152 82 KGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP 161 (271)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~ 161 (271)
++ ....|+||||++||.+++ ||++|++++|+|+||||||+|+++++.+++..+.+|+||+.|++..+
T Consensus 162 ~~-----------~~~~Gi~TG~~~LD~~t~--Gl~~G~LiiIaarPgmGKTafal~ia~~~a~~g~~v~~fSlEMs~~q 228 (428)
T PRK06749 162 DA-----------KEITGIETGYTSLNKMTC--GLQEGDFVVLGARPSMGKTAFALNVGLHAAKSGAAVGLFSLEMSSKQ 228 (428)
T ss_pred cC-----------CCCCCccCCcHHHHHHhC--CCCCCcEEEEEeCCCCCchHHHHHHHHHHHhcCCCEEEEEeeCCHHH
Confidence 11 167899999999999998 99999999999999999999999999999987778999999988654
Q ss_pred H----HHHHcCCcCCc---------------------------ceec--CCCCHHHHHHHHHHHHhcCC--ccEEEEcch
Q 024152 162 S----LAETIGVKTEN---------------------------LLLA--QPDCGEQALSLVDTLIRSGS--VDVVVVDSV 206 (271)
Q Consensus 162 ~----~~~~~g~~~~~---------------------------~~~~--~~~~~~e~~~~~~~l~~~~~--~~lvvID~l 206 (271)
. ++...+++..+ +.+. ...+..++.+.+++++.+++ +.+|+||||
T Consensus 229 l~~R~ls~~~~i~~~~l~~~~~~l~~~e~~~~~~a~~~l~~~~i~i~d~~~~t~~~I~~~~r~~~~~~~~~~~lvvIDyL 308 (428)
T PRK06749 229 LLKRMASCVGEVSGGRLKNPKHRFAMEDWEKVSKAFAEIGELPLEIYDNAGVTVQDIWMQTRKLKRKHGDKKILIIVDYL 308 (428)
T ss_pred HHHHHHHhccCCCHHHHhcCcccCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCcEEEEeCh
Confidence 2 22222222211 1222 22456788888998877655 559999999
Q ss_pred hhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccc--------ccchhhhhhh
Q 024152 207 AALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFS--------INLNKIIDES 267 (271)
Q Consensus 207 ~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~--------~~~~~~l~~s 267 (271)
+.+..... . ..++.+++..+++.||.+|+|++||||++||++. +|.+++|++|
T Consensus 309 qli~~~~~------~--~~~r~~ei~~isr~LK~lAkel~vpVi~lsQLnR~~e~r~~krP~lsDLR~S 369 (428)
T PRK06749 309 QLITGDPK------H--KGNRFQEISEISRKLKLLARELNVCVVALSQLSRSVESRQDKRPLLSDLRET 369 (428)
T ss_pred hhcCCCCC------C--CCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccCCCCCchHhhhhc
Confidence 98863110 0 1246678999999999999999999999999993 5778999987
No 16
>PHA02542 41 41 helicase; Provisional
Probab=99.97 E-value=2.3e-31 Score=249.50 Aligned_cols=238 Identities=12% Similarity=0.038 Sum_probs=171.9
Q ss_pred hhhhhhhhhhhhhhhcCCCCCCCCcccccccccccccccccccccccccCCCCCCcc-c---cCcchHHHHHHHHHHHHH
Q 024152 2 ASLLRNASLLRRCLLSVSPPHPHPQSFRGGMLETSTQICNFSSKSKRKSKSDGSDSG-E---ENMSKKDLALQQALDQIT 77 (271)
Q Consensus 2 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~i~ 77 (271)
|++|++++.+|+++.+ +.++...++.... + ++.++++++++..... . .......+++.++++.++
T Consensus 91 a~~v~~~~~~R~l~~~------~~~~~~~~~~~~~-~----~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ie 159 (473)
T PHA02542 91 VKETEKWCQDRAMYNA------LSKAIEIQDNADK-P----LEKRNKKLPDVGAIPDIMQEALAISFDSSVGHDYFEDYE 159 (473)
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHhccCC-C----hhHhhhhccchhhHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 7899999999999997 7776666554432 2 4444555555411000 0 001111456777888888
Q ss_pred HhcCCCceeeccccCCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCC
Q 024152 78 SSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH 157 (271)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~ 157 (271)
+.+.... ...+|+|||+++||.+++ ||+++|++++|+|+||+|||||++++|.+++..+.+|+||+.|+
T Consensus 160 ~~~~~~~----------~~~~gi~TG~~~LD~~t~-gGl~~G~LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLEM 228 (473)
T PHA02542 160 ERYDSYQ----------SKANKIPFKLEILNKITK-GGAERKTLNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISMEM 228 (473)
T ss_pred HHHhhcc----------CCCCccCCCcHHHHHhcc-CCCCCCcEEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEeccC
Confidence 7543211 146899999999999996 69999999999999999999999999999987777999999999
Q ss_pred CCCH----HHHHHcCCcCCcc-----------------------eec----CCCCHHHHHHHHHHHHhcCC--ccEEEEc
Q 024152 158 ALDP----SLAETIGVKTENL-----------------------LLA----QPDCGEQALSLVDTLIRSGS--VDVVVVD 204 (271)
Q Consensus 158 ~~~~----~~~~~~g~~~~~~-----------------------~~~----~~~~~~e~~~~~~~l~~~~~--~~lvvID 204 (271)
+..+ ..+...++..+++ .+. ...+..++.+.++++..+++ +++||||
T Consensus 229 ~~~ql~~Rl~a~~~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~l~I~~~d~~~lt~~~ir~~~rrlk~~~g~~~dlVvID 308 (473)
T PHA02542 229 AEEVIAKRIDANLLDVSLDDIDDLSKAEYKAKMEKLRSKTQGKLIIKQYPTGGAHAGHFRALLNELKLKKNFKPDVIIVD 308 (473)
T ss_pred CHHHHHHHHHHHHcCCCHHHHhhcCHHHHHHHHHHHHHHhCCCceeecCCCCCCCHHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 8764 3333344443222 111 22457789999998876554 8999999
Q ss_pred chhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccc------ccchhhhhhh
Q 024152 205 SVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFS------INLNKIIDES 267 (271)
Q Consensus 205 ~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~------~~~~~~l~~s 267 (271)
||+.+.+ ..... ...++.++++.+++.||.+|+|++||||+++|++. .|.++++++|
T Consensus 309 YLqL~~~-~~~~~-----~~~nr~~ei~~Isr~LK~lAkel~vpVi~lsQLnR~~e~r~dP~lsDLreS 371 (473)
T PHA02542 309 YLGICAS-SRLRV-----SSENSYTYVKAIAEELRGLAVEHDVVVWTAAQTTRSGWDSSDVDMSDTAES 371 (473)
T ss_pred chhhccC-CcccC-----CCCChHHHHHHHHHHHHHHHHHhCCeEEEEEeeCccccccCCCcchhcccc
Confidence 9999863 11111 11246678999999999999999999999999983 3788899987
No 17
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=99.97 E-value=4.7e-31 Score=247.03 Aligned_cols=237 Identities=16% Similarity=0.202 Sum_probs=188.0
Q ss_pred hhhhhhhhhhhhhhhcCCCCCCCCcccccccccccccccccccccccccCCCCCCccccCcchHHHHHHHHHHHHHHhcC
Q 024152 2 ASLLRNASLLRRCLLSVSPPHPHPQSFRGGMLETSTQICNFSSKSKRKSKSDGSDSGEENMSKKDLALQQALDQITSSFG 81 (271)
Q Consensus 2 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 81 (271)
|++|++++.+|+++.. +.++...++.... +++++++.+++.+.++.+.....++.++.+.+.++++.+++.+.
T Consensus 98 a~~v~e~~~~R~l~~~------~~~~~~~a~~~~~-~~~e~l~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (434)
T TIGR00665 98 AEIVKEKAILRRLIEA------GTEIVELAYDPEG-DVEELLDEAEQKIFEIAESRTSGGFKSIKEILKDTVEEIEELYE 170 (434)
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHh
Confidence 6899999999999997 7777666665544 79999999999999998776666788888999999999887655
Q ss_pred CCceeeccccCCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh-cCCeEEEEcCCCCCC
Q 024152 82 KGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR-QGGYCVFIDAEHALD 160 (271)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~-~~g~v~~~~~e~~~~ 160 (271)
+.. ...|+|||++.||.+++ ||++|++++|+|+||+|||+|+++++.+++. .+.+|+||+.|++..
T Consensus 171 ~~~-----------~~~gi~tG~~~LD~~~~--G~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~ 237 (434)
T TIGR00665 171 RGG-----------GITGVPTGFTDLDKLTS--GLQPSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAE 237 (434)
T ss_pred CCC-----------CCCcccCCchhhHhhcC--CCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHH
Confidence 432 57899999999999997 9999999999999999999999999999886 466899999998865
Q ss_pred HH----HHHHcCCcCCc-------------------------ceec--CCCCHHHHHHHHHHHHhcCCccEEEEcchhhh
Q 024152 161 PS----LAETIGVKTEN-------------------------LLLA--QPDCGEQALSLVDTLIRSGSVDVVVVDSVAAL 209 (271)
Q Consensus 161 ~~----~~~~~g~~~~~-------------------------~~~~--~~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~ 209 (271)
+. ++...+++... +.+. ...+.++++..++++..++++++|||||++.+
T Consensus 238 ~i~~R~~~~~~~v~~~~~~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~~~~~i~~~i~~~~~~~~~~~vvID~l~~i 317 (434)
T TIGR00665 238 QLAMRMLSSESRVDSQKLRTGKLSDEDWEKLTSAAGKLSEAPLYIDDTPGLTITELRAKARRLKREHGLGLIVIDYLQLM 317 (434)
T ss_pred HHHHHHHHHhcCCCHHHhccCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHhc
Confidence 42 22223333211 1221 23467889999998888888999999999988
Q ss_pred cCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccc--------ccchhhhhhh
Q 024152 210 VPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFS--------INLNKIIDES 267 (271)
Q Consensus 210 ~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~--------~~~~~~l~~s 267 (271)
..... ..++..++..+++.|+.+|++++|||++++|+.. .|.++++++|
T Consensus 318 ~~~~~---------~~~r~~~i~~i~~~Lk~lA~e~~i~vi~lsqlnr~~~~r~~~~p~lsdlr~S 374 (434)
T TIGR00665 318 SGSGR---------SENRQQEVSEISRSLKALAKELNVPVIALSQLSRSVEQREDKRPQLSDLRES 374 (434)
T ss_pred CCCCC---------CCCHHHHHHHHHHHHHHHHHHhCCeEEEEeccCcchhccCCCCCChHHHhhc
Confidence 53111 1134467888999999999999999999999864 3567788887
No 18
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=99.97 E-value=6.4e-30 Score=227.92 Aligned_cols=193 Identities=64% Similarity=0.966 Sum_probs=173.1
Q ss_pred HHHHHHHHHHHHHhcCCCceeeccccCCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh
Q 024152 66 DLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR 145 (271)
Q Consensus 66 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~ 145 (271)
..++..++.+|++.|+++..+.+++ .....++.+|||++.||.+|+.||||+|.++.|+||||+|||||+++++..++.
T Consensus 3 ~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~i~TGi~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~ 81 (321)
T TIGR02012 3 QKALEAALAQIEKQFGKGSIMRLGE-KSVMDVETISTGSLSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQK 81 (321)
T ss_pred HHHHHHHHHHHHHHcCcceeEECcc-cccccCceecCCCHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3478889999999999999999884 344578899999999999997689999999999999999999999999999998
Q ss_pred cCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHH
Q 024152 146 QGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMA 225 (271)
Q Consensus 146 ~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~ 225 (271)
.++.|+||+.|....+.+++.+|++.+++.+.++.+.++.+..+..+.+...+++||||+++.+.+..++.++.|+.+..
T Consensus 82 ~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~~~~~lIVIDSv~al~~~~E~e~~~g~~~~~ 161 (321)
T TIGR02012 82 AGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVRSGAVDIIVVDSVAALVPKAEIEGEMGDSHVG 161 (321)
T ss_pred cCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhccCCcEEEEcchhhhccchhhcccccccchh
Confidence 89999999999999888999999999999999999999998888888878889999999999998777777766666566
Q ss_pred HHHHHHHHHHHHHHHHHhhcCcEEEEEccccccc
Q 024152 226 MQARLMSQALRKLSHSLSLSQTILIFINQVFSIN 259 (271)
Q Consensus 226 ~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~~~ 259 (271)
.+++.+++.++.|..++++.+||+|+++|++..+
T Consensus 162 ~~aR~m~~~lr~L~~~l~~~~~tvi~tNQvr~~~ 195 (321)
T TIGR02012 162 LQARLMSQALRKLTGALSKSNTTAIFINQIREKI 195 (321)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEEecceecc
Confidence 7778888999999999999999999999998764
No 19
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=99.97 E-value=9.1e-30 Score=227.06 Aligned_cols=193 Identities=64% Similarity=0.965 Sum_probs=174.4
Q ss_pred HHHHHHHHHHHHHhcCCCceeeccccCCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh
Q 024152 66 DLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR 145 (271)
Q Consensus 66 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~ 145 (271)
..++..++.+|++.|+++..+++++. ....+..+|||++.||.+|+.||+|+|.++.|+||||+|||||+++++.+++.
T Consensus 3 ~~~~~~~~~~i~~~~g~~~~~~~~~~-~~~~~~~isTGi~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~ 81 (325)
T cd00983 3 QKALELALKQIEKKFGKGSIMKLGDD-AVQDVEVIPTGSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQK 81 (325)
T ss_pred hHHHHHHHHHHHHHhCCcceEECccc-cccCCceecCCCHHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34788999999999999999998864 44578899999999999998789999999999999999999999999999999
Q ss_pred cCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHH
Q 024152 146 QGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMA 225 (271)
Q Consensus 146 ~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~ 225 (271)
.++.++|++.|..+.+.+++.+|++.+++.+.++.+.++.+..+..+.++..+++||||++..++++.++.++.++.+..
T Consensus 82 ~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s~~~~lIVIDSvaal~~~~E~~~~~~~~~~~ 161 (325)
T cd00983 82 LGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVRSGAVDLIVVDSVAALVPKAEIEGEMGDSHVG 161 (325)
T ss_pred cCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHhccCCCEEEEcchHhhcccccccccccccchH
Confidence 99999999999999999999999999999999999999999988888888889999999999998777777666666666
Q ss_pred HHHHHHHHHHHHHHHHHhhcCcEEEEEccccccc
Q 024152 226 MQARLMSQALRKLSHSLSLSQTILIFINQVFSIN 259 (271)
Q Consensus 226 ~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~~~ 259 (271)
.+++.+++.++.|..++++.++++|++||++..+
T Consensus 162 ~qaR~l~~~Lr~L~~~~~k~~~~vI~tNQvr~~i 195 (325)
T cd00983 162 LQARLMSQALRKLTGSINKSNTTVIFINQLREKI 195 (325)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEEEcccccc
Confidence 7778899999999999999999999999998765
No 20
>PRK09354 recA recombinase A; Provisional
Probab=99.97 E-value=8.8e-30 Score=228.71 Aligned_cols=195 Identities=66% Similarity=0.985 Sum_probs=175.9
Q ss_pred hHHHHHHHHHHHHHHhcCCCceeeccccCCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152 64 KKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 64 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
....++..++.+|++.|+++..+.+++. ....+..+|||++.||.+|+.||||+|.++.|+||||+|||||+++++.++
T Consensus 6 ~~~~~~~~~~~~i~~~~g~~~~~~~~~~-~~~~~~~isTGi~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~ 84 (349)
T PRK09354 6 EKQKALEAALKQIEKQFGKGSIMRLGDD-AAMDVEVISTGSLALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEA 84 (349)
T ss_pred HHHHHHHHHHHHHHHHhCCCCceEcccc-cccCCceecCCcHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3456889999999999999999998864 233688999999999999987899999999999999999999999999999
Q ss_pred hhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhh
Q 024152 144 QRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAH 223 (271)
Q Consensus 144 ~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~ 223 (271)
+..++.++|++.|....+.+++.+|++.+++.+.++.+.++.+..+..+.++..+++||||++..+.++.++.++.++.+
T Consensus 85 ~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s~~~~lIVIDSvaaL~~~~E~eg~~gd~~ 164 (349)
T PRK09354 85 QKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRSGAVDLIVVDSVAALVPKAEIEGEMGDSH 164 (349)
T ss_pred HHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcCCCCEEEEeChhhhcchhhhcCCccccc
Confidence 99999999999999999999999999999999999989999999888888888999999999999987778877666666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccccc
Q 024152 224 MAMQARLMSQALRKLSHSLSLSQTILIFINQVFSIN 259 (271)
Q Consensus 224 ~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~~~ 259 (271)
...+++.+++.++.|..++++.+||+|++||++..+
T Consensus 165 ~~~qar~ms~~Lr~L~~~l~k~~itvI~tNQvr~~i 200 (349)
T PRK09354 165 VGLQARLMSQALRKLTGNISKSNTTVIFINQIREKI 200 (349)
T ss_pred hhHHHHHHHHHHHHHHHHHHHcCcEEEEEEeeeecc
Confidence 667788888999999999999999999999999864
No 21
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=99.96 E-value=1.7e-28 Score=218.23 Aligned_cols=192 Identities=67% Similarity=0.990 Sum_probs=163.8
Q ss_pred HHHHHHHHHHHhcCCCceeeccccCCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcC
Q 024152 68 ALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQG 147 (271)
Q Consensus 68 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~ 147 (271)
++..++++|++.|+++..+++++......++.+|||++.||..+++||+|+|.++.|+|++|+|||||++.++.++...+
T Consensus 2 ~l~~~~~~i~k~~g~~~i~~lg~~~~~~~~~~i~TG~~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~~g 81 (322)
T PF00154_consen 2 ALEKALKQIEKKFGKGSIMRLGDNAESQNIEVISTGSPALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKQG 81 (322)
T ss_dssp HHHHHHHHHHHHHTTTSSEETTS-C-GCSS-EE--S-HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHhCCCceeecCCcccccccceEecCCcccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhccc
Confidence 57889999999999999999987655667899999999999999889999999999999999999999999999998888
Q ss_pred CeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHH
Q 024152 148 GYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQ 227 (271)
Q Consensus 148 g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~ 227 (271)
+.++|++.|..+++.+++.+|++++++.+.++.+.++.++.+..+.+...+++|||||+..+.|+.++.+..++.+.+.+
T Consensus 82 ~~~a~ID~e~~ld~~~a~~lGvdl~rllv~~P~~~E~al~~~e~lirsg~~~lVVvDSv~al~p~~E~e~~~~~~~~g~~ 161 (322)
T PF00154_consen 82 GICAFIDAEHALDPEYAESLGVDLDRLLVVQPDTGEQALWIAEQLIRSGAVDLVVVDSVAALVPKAELEGEIGDQQVGLQ 161 (322)
T ss_dssp -EEEEEESSS---HHHHHHTT--GGGEEEEE-SSHHHHHHHHHHHHHTTSESEEEEE-CTT-B-HHHHTTSTSSTSSSHH
T ss_pred ceeEEecCcccchhhHHHhcCccccceEEecCCcHHHHHHHHHHHhhcccccEEEEecCcccCCHHHHhhccccccCcch
Confidence 99999999999999999999999999999999999999999999888888999999999999998888887788788899
Q ss_pred HHHHHHHHHHHHHHHhhcCcEEEEEccccccc
Q 024152 228 ARLMSQALRKLSHSLSLSQTILIFINQVFSIN 259 (271)
Q Consensus 228 ~~~l~~~~r~L~~lake~~~~Vi~~sql~~~~ 259 (271)
+|.+++.+|.+...+.+.++++|++||+++++
T Consensus 162 Ar~ms~~lr~lt~~l~~~~~~~i~INQ~R~~i 193 (322)
T PF00154_consen 162 ARLMSQALRKLTPLLSKSNTTLIFINQVRDKI 193 (322)
T ss_dssp HHHHHHHHHHHHHHHHTTT-EEEEEEEESSSS
T ss_pred HHHHHHHHHHHHHHHHhhceEEEEeehHHHHH
Confidence 99999999999999999999999999999876
No 22
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=99.94 E-value=5e-26 Score=221.56 Aligned_cols=195 Identities=60% Similarity=0.945 Sum_probs=173.4
Q ss_pred hHHHHHHHHHHHHHHhcCCCceeeccccCCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152 64 KKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 64 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
..+..+..++.+|++.|++++.+.+++. ....+..++||++.||.+|+.||+++|.++.|+|+||+|||||+++++.+.
T Consensus 6 ~~~~~~~~~~~~~~~~~g~~~~~~l~~~-~~~~v~~isTGi~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a 84 (790)
T PRK09519 6 DREKALELAVAQIEKSYGKGSVMRLGDE-ARQPISVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANA 84 (790)
T ss_pred HHHHHHHHHHHHHHHHhccchhcccccc-cccCCceecCCcHHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3455788999999999999998877753 345678999999999999976799999999999999999999999999999
Q ss_pred hhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhh
Q 024152 144 QRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAH 223 (271)
Q Consensus 144 ~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~ 223 (271)
+..++.++|++.|..+...+++.+|++++++.+.++.+.++.+..+..+..+..++++|||+++.++++.++.+..+..+
T Consensus 85 ~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~~~~~~LVVIDSI~aL~~r~E~~g~~g~~~ 164 (790)
T PRK09519 85 QAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSH 164 (790)
T ss_pred HHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhhcCCCeEEEEcchhhhcchhhccCCCCccc
Confidence 98899999999999999889999999999999988889999888888887778899999999999997788877666555
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccccc
Q 024152 224 MAMQARLMSQALRKLSHSLSLSQTILIFINQVFSIN 259 (271)
Q Consensus 224 ~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~~~ 259 (271)
...+++.+++.++.|..++++.|+++|+++|++..+
T Consensus 165 ~~~q~rl~~q~L~~L~~~l~~~nvtvi~TNQv~~~~ 200 (790)
T PRK09519 165 VGLQARLMSQALRKMTGALNNSGTTAIFINQLRDKI 200 (790)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEEecceecC
Confidence 567778888999999999999999999999999865
No 23
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=99.93 E-value=3e-25 Score=200.30 Aligned_cols=171 Identities=27% Similarity=0.423 Sum_probs=133.7
Q ss_pred CCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh------cCCeEEEEcCCCCCCH----HHHH
Q 024152 96 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR------QGGYCVFIDAEHALDP----SLAE 165 (271)
Q Consensus 96 ~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~------~~g~v~~~~~e~~~~~----~~~~ 165 (271)
...+++||+++||.+++ ||+++|++++|+|+||+|||+|+++++.++.. .+++|+|+++|..+.. .+++
T Consensus 101 ~~~~i~tG~~~LD~lL~-GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~ 179 (342)
T PLN03186 101 EIIQITTGSRELDKILE-GGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAE 179 (342)
T ss_pred CcceeCCCCHHHHHhhc-CCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHH
Confidence 57889999999999999 99999999999999999999999999987652 2358999999998765 3455
Q ss_pred HcCCcC----CcceecCCCCHHHHHHHHHH---HHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHH
Q 024152 166 TIGVKT----ENLLLAQPDCGEQALSLVDT---LIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKL 238 (271)
Q Consensus 166 ~~g~~~----~~~~~~~~~~~~e~~~~~~~---l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L 238 (271)
.+++++ +++.+....+.+++...+.. +....+++++||||++.++ +.++.++ ++ ...+++.+.+.++.|
T Consensus 180 ~~~~~~~~~l~~i~~~~~~~~e~~~~ll~~~~~~~~~~~~~LIVIDSI~alf-r~~~~~~-g~--l~~r~~~L~~~l~~L 255 (342)
T PLN03186 180 RFGLNGADVLENVAYARAYNTDHQSELLLEAASMMAETRFALMIVDSATALY-RTEFSGR-GE--LSARQMHLGKFLRSL 255 (342)
T ss_pred HcCCChhhhccceEEEecCCHHHHHHHHHHHHHHhhccCCCEEEEeCcHHHH-HHHhcCC-cc--HHHHHHHHHHHHHHH
Confidence 667765 45666666777766554433 3456689999999999987 3444332 21 123455688899999
Q ss_pred HHHHhhcCcEEEEEccccccc----------chhhhhhhccCC
Q 024152 239 SHSLSLSQTILIFINQVFSIN----------LNKIIDESSGHL 271 (271)
Q Consensus 239 ~~lake~~~~Vi~~sql~~~~----------~~~~l~~s~~~~ 271 (271)
+++|++++++|+++||+...+ +.|.++..|+|+
T Consensus 256 ~~lA~~~~vaVviTNqv~~~~~~~~~~~~~~~~P~gG~~~~h~ 298 (342)
T PLN03186 256 QRLADEFGVAVVITNQVVAQVDGSAFFAGPQLKPIGGNIMAHA 298 (342)
T ss_pred HHHHHHcCCEEEEEcCEEEccCCccccCCCccccchhHHHHhh
Confidence 999999999999999997543 368899999985
No 24
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=99.93 E-value=2.2e-24 Score=188.63 Aligned_cols=191 Identities=54% Similarity=0.829 Sum_probs=158.8
Q ss_pred HHHHHHHHHHHHHhcCCCceeeccccCCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh
Q 024152 66 DLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR 145 (271)
Q Consensus 66 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~ 145 (271)
..+.......+++.++......++.......+..++||...||.++| ||+|.|.++.|+||+|+||||+|++++.+++.
T Consensus 8 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~TGs~~LD~~LG-GGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~ 86 (279)
T COG0468 8 EKALEAALAQIEKAFGKGSIMALGGDERREDIEAISTGSLALDEALG-GGLPRGRITEIYGPESSGKTTLALQLVANAQK 86 (279)
T ss_pred hhHHHHHHHHHHHhhcccchhhhhHHHHhhccccccccchhHHHHhc-CCcccceEEEEecCCCcchhhHHHHHHHHhhc
Confidence 34445555666666665443333222233468899999999999999 99999999999999999999999999999999
Q ss_pred cCCeEEEEcCCCCCCHHHHHHcCCc-CCcceecCCCCHHHHHHHHHHHHhcCC--ccEEEEcchhhhcCCCccCCccchh
Q 024152 146 QGGYCVFIDAEHALDPSLAETIGVK-TENLLLAQPDCGEQALSLVDTLIRSGS--VDVVVVDSVAALVPKGELDGEMGDA 222 (271)
Q Consensus 146 ~~g~v~~~~~e~~~~~~~~~~~g~~-~~~~~~~~~~~~~e~~~~~~~l~~~~~--~~lvvID~l~~~~~~~~l~~~~g~~ 222 (271)
.++.++|+++|..+.+.+...++.. .+++.+.++.+.++.+..+..+..... ++++|||++..+++..... ..
T Consensus 87 ~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~~~~e~q~~i~~~~~~~~~~~i~LvVVDSvaa~~r~~~~~----d~ 162 (279)
T COG0468 87 PGGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQPDTGEQQLEIAEKLARSGAEKIDLLVVDSVAALVRAEEIE----DG 162 (279)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHhhhcceeEecCCCHHHHHHHHHHHHHhccCCCCEEEEecCcccchhhhcC----cc
Confidence 9999999999999999999999988 999999999999988888777665555 9999999999998643322 34
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcccccccch
Q 024152 223 HMAMQARLMSQALRKLSHSLSLSQTILIFINQVFSINLN 261 (271)
Q Consensus 223 ~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~~~~~ 261 (271)
....+++.+++.++.|..++++++++|+++||++.++..
T Consensus 163 ~~~~~~r~ls~~l~~L~~~a~~~~~~vi~~NQv~~k~~~ 201 (279)
T COG0468 163 HLGLRARLLSKALRKLTRLANKYNTAVIFTNQVRAKIGV 201 (279)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCcEEEEECceeeecCc
Confidence 456788999999999999999999999999999988754
No 25
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=99.92 E-value=4.1e-24 Score=191.26 Aligned_cols=171 Identities=29% Similarity=0.427 Sum_probs=134.9
Q ss_pred CCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh------cCCeEEEEcCCCCCCH----HHHH
Q 024152 96 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR------QGGYCVFIDAEHALDP----SLAE 165 (271)
Q Consensus 96 ~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~------~~g~v~~~~~e~~~~~----~~~~ 165 (271)
....++||++.||.+++ ||+++|.+++|+|+||+|||+||++++.+++. .+++|+|+++|..+.. .++.
T Consensus 74 ~~~~isTG~~~LD~lLg-GGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~ 152 (313)
T TIGR02238 74 KVLKITTGSQALDGILG-GGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAE 152 (313)
T ss_pred cCceeCCCCHHHHHHhC-CCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHH
Confidence 56789999999999999 99999999999999999999999999987763 2568999999998765 3456
Q ss_pred HcCCcCC----cceecCCCCHHHHHHHHHH---HHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHH
Q 024152 166 TIGVKTE----NLLLAQPDCGEQALSLVDT---LIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKL 238 (271)
Q Consensus 166 ~~g~~~~----~~~~~~~~~~~e~~~~~~~---l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L 238 (271)
.++++++ ++.+.+..+.++....+.. ...+.+++++|||+++.++. .++.++ |+ ...+++.+.+.+..|
T Consensus 153 ~~g~d~~~~l~~i~~~~~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSisal~r-~~~~~~-g~--~~~r~~~l~~~~~~L 228 (313)
T TIGR02238 153 RFGVDPDAVLDNILYARAYTSEHQMELLDYLAAKFSEEPFRLLIVDSIMALFR-VDFSGR-GE--LSERQQKLAQMLSRL 228 (313)
T ss_pred HcCCChHHhcCcEEEecCCCHHHHHHHHHHHHHHhhccCCCEEEEEcchHhhh-hhccCc-cc--hHHHHHHHHHHHHHH
Confidence 6777653 5667777777776655443 34456899999999998873 444431 21 223455678888899
Q ss_pred HHHHhhcCcEEEEEccccccc----------chhhhhhhccCC
Q 024152 239 SHSLSLSQTILIFINQVFSIN----------LNKIIDESSGHL 271 (271)
Q Consensus 239 ~~lake~~~~Vi~~sql~~~~----------~~~~l~~s~~~~ 271 (271)
.++|++++++|+++||++.++ ..|.++..|+|+
T Consensus 229 ~~la~~~~vavvitNqv~~~~~~~~~~~~~~~~p~gG~~~~h~ 271 (313)
T TIGR02238 229 NKISEEFNVAVFVTNQVQADPGATMTFIADPKKPIGGHVLAHA 271 (313)
T ss_pred HHHHHHcCcEEEEECceEecCCcccccCCCCccCcchhhhhhh
Confidence 999999999999999999764 357788899985
No 26
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=99.92 E-value=4.7e-24 Score=192.32 Aligned_cols=171 Identities=28% Similarity=0.402 Sum_probs=135.9
Q ss_pred CCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh------cCCeEEEEcCCCCCCH----HHHH
Q 024152 96 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR------QGGYCVFIDAEHALDP----SLAE 165 (271)
Q Consensus 96 ~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~------~~g~v~~~~~e~~~~~----~~~~ 165 (271)
....++||++.||.+++ ||++.|.+++|+|+||+|||+||++++.+.+. .+++|+|+++|..+.+ .+++
T Consensus 104 ~~~~isTG~~~LD~lLg-GGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~ 182 (344)
T PLN03187 104 SVVRITTGSQALDELLG-GGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAE 182 (344)
T ss_pred cCceecCCcHhHHhhcC-CCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHH
Confidence 46789999999999999 99999999999999999999999999987763 1358999999998776 3455
Q ss_pred HcCCcC----CcceecCCCCHHHHHHHHHH---HHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHH
Q 024152 166 TIGVKT----ENLLLAQPDCGEQALSLVDT---LIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKL 238 (271)
Q Consensus 166 ~~g~~~----~~~~~~~~~~~~e~~~~~~~---l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L 238 (271)
.+|+++ +++.+.+..+.+++...+.. ...+.+++++|||+++.++ +.++.++ ++ ...+++.+.+.++.|
T Consensus 183 ~~g~d~~~~l~~I~~~~~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSital~-r~~~~~r-g~--l~~rq~~L~~~~~~L 258 (344)
T PLN03187 183 RFGMDADAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALF-RVDFTGR-GE--LAERQQKLAQMLSRL 258 (344)
T ss_pred HcCCChhhhcCeEEEecCCCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHhh-hccccCc-cc--hHHHHHHHHHHHHHH
Confidence 677765 45677777888876555443 3445679999999999887 4544432 21 224556688888999
Q ss_pred HHHHhhcCcEEEEEccccccc---------chhhhhhhccCC
Q 024152 239 SHSLSLSQTILIFINQVFSIN---------LNKIIDESSGHL 271 (271)
Q Consensus 239 ~~lake~~~~Vi~~sql~~~~---------~~~~l~~s~~~~ 271 (271)
+++|+++|++|+++||.+.++ ..|..+.+|+|+
T Consensus 259 ~~lA~~~~vavvvTNqv~~~~~~~~~~~~~~~pagG~~~~h~ 300 (344)
T PLN03187 259 TKIAEEFNVAVYMTNQVIADPGGGMFISDPKKPAGGHVLAHA 300 (344)
T ss_pred HHHHHHcCCEEEEEecEEEcCCcccccCCCCCCCCchhhhee
Confidence 999999999999999998755 247789999985
No 27
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=99.92 E-value=2.6e-24 Score=192.93 Aligned_cols=171 Identities=29% Similarity=0.459 Sum_probs=130.6
Q ss_pred CCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh---cC---CeEEEEcCCCCCCHH----HHH
Q 024152 96 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR---QG---GYCVFIDAEHALDPS----LAE 165 (271)
Q Consensus 96 ~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~---~~---g~v~~~~~e~~~~~~----~~~ 165 (271)
...+++||+++||.+++ ||+++|++++|+|+||+|||+|+++++.++.. .+ ++|+|+++|..+.+. +++
T Consensus 74 ~~~~~~tg~~~lD~ll~-gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~~ia~ 152 (316)
T TIGR02239 74 EVIQLTTGSKELDKLLG-GGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIAE 152 (316)
T ss_pred ccceeCCCCHHHHHHhc-CCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHHHHHH
Confidence 57889999999999999 99999999999999999999999999986552 22 478999999876652 455
Q ss_pred HcCCcCC----cceecCCCCHHHHHHHHHH---HHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHH
Q 024152 166 TIGVKTE----NLLLAQPDCGEQALSLVDT---LIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKL 238 (271)
Q Consensus 166 ~~g~~~~----~~~~~~~~~~~e~~~~~~~---l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L 238 (271)
.+++.++ ++.+....+.+++...+.. .....++++||||+++.++ +.++.+. + ....+++.+.+.++.|
T Consensus 153 ~~~~~~~~~l~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~LvVIDSI~al~-r~~~~~~-~--~~~~rq~~l~~~~~~L 228 (316)
T TIGR02239 153 RYGLNPEDVLDNVAYARAYNTDHQLQLLQQAAAMMSESRFALLIVDSATALY-RTDFSGR-G--ELSARQMHLARFLRSL 228 (316)
T ss_pred HcCCChHHhhccEEEEecCChHHHHHHHHHHHHhhccCCccEEEEECcHHHh-hhhcCCc-c--hHHHHHHHHHHHHHHH
Confidence 5677654 3455555666665544433 3445679999999999987 3443321 1 2224556678889999
Q ss_pred HHHHhhcCcEEEEEccccccc-----------chhhhhhhccCC
Q 024152 239 SHSLSLSQTILIFINQVFSIN-----------LNKIIDESSGHL 271 (271)
Q Consensus 239 ~~lake~~~~Vi~~sql~~~~-----------~~~~l~~s~~~~ 271 (271)
+++|++++++|+++||++.++ ..|.++..|+|+
T Consensus 229 ~~la~~~~vavv~tNqv~~~~~~~~~~~~g~~~~p~gG~~~~h~ 272 (316)
T TIGR02239 229 QRLADEFGVAVVITNQVVAQVDGAGSMFAGDPKKPIGGNIMAHA 272 (316)
T ss_pred HHHHHHhCCEEEEECceEEecCCccccccCCCCcCCchHHHHhh
Confidence 999999999999999999543 357789999995
No 28
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=99.91 E-value=1.8e-23 Score=179.14 Aligned_cols=167 Identities=46% Similarity=0.626 Sum_probs=130.6
Q ss_pred cccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcC------CeEEEEcCCCCCCHHH----HHHcCC
Q 024152 100 VSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQG------GYCVFIDAEHALDPSL----AETIGV 169 (271)
Q Consensus 100 i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~------g~v~~~~~e~~~~~~~----~~~~g~ 169 (271)
++||++.||.+++ ||+++|++++|.|+||+|||+|+++++.+....+ +.|+|++.|..+...+ ....+.
T Consensus 1 i~tG~~~lD~~l~-GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~ 79 (226)
T cd01393 1 ISTGSKALDELLG-GGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGL 79 (226)
T ss_pred CCCCcHHHHHHhC-CCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhcc
Confidence 5899999999998 8999999999999999999999999999987665 7899999998766522 223333
Q ss_pred c----CCcceecCCCCHHHHHHHHHHHHh---cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHH
Q 024152 170 K----TENLLLAQPDCGEQALSLVDTLIR---SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSL 242 (271)
Q Consensus 170 ~----~~~~~~~~~~~~~e~~~~~~~l~~---~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~la 242 (271)
. .+++.+....+.+++...++.+.. ..+++++|||+++.++. ..+.+ ......+.+.+.+.++.|+.+|
T Consensus 80 ~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~-~~~~~---~~~~~~~~~~l~~~~~~L~~~a 155 (226)
T cd01393 80 DPEEVLDNIYVARPYNGEQQLEIVEELERIMSSGRVDLVVVDSVAALFR-KEFIG---RGMLAERARLLSQALRKLLRLA 155 (226)
T ss_pred chhhhhccEEEEeCCCHHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhh-hhhcC---CchHHHHHHHHHHHHHHHHHHH
Confidence 2 456777777888888887777654 67899999999998864 22111 1112345667888899999999
Q ss_pred hhcCcEEEEEccccccc-------chhhhhhhccCC
Q 024152 243 SLSQTILIFINQVFSIN-------LNKIIDESSGHL 271 (271)
Q Consensus 243 ke~~~~Vi~~sql~~~~-------~~~~l~~s~~~~ 271 (271)
++++++||+++|+.... ..+.++..|.|.
T Consensus 156 ~~~~~~vi~tnq~~~~~~~~~~~~~~p~~G~~~~~~ 191 (226)
T cd01393 156 DKFNVAVVFTNQVRAKVDVMFGDPETPAGGNALAHA 191 (226)
T ss_pred HHhCcEEEEEEEEeeecccccCCCccccCchhhhCc
Confidence 99999999999998643 346778888874
No 29
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=99.91 E-value=7.2e-24 Score=185.05 Aligned_cols=171 Identities=32% Similarity=0.515 Sum_probs=129.2
Q ss_pred CCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh------cCCeEEEEcCCCCCCHH----HHH
Q 024152 96 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR------QGGYCVFIDAEHALDPS----LAE 165 (271)
Q Consensus 96 ~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~------~~g~v~~~~~e~~~~~~----~~~ 165 (271)
....|+||++.||.+|+ ||++.|.+++|+|+||+|||.||++++.++.. .+++|+||++|..+... +++
T Consensus 16 ~~~~i~Tg~~~lD~~L~-GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~ 94 (256)
T PF08423_consen 16 RWSRISTGCKSLDELLG-GGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAE 94 (256)
T ss_dssp TS-EE--SSHHHHHHTT-SSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHH
T ss_pred cCCeeCCCCHHHHHhhC-CCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhh
Confidence 34569999999999999 99999999999999999999999999998763 24589999999988753 344
Q ss_pred HcCCc----CCcceecCCCCHHHHHHHHHHH---HhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHH
Q 024152 166 TIGVK----TENLLLAQPDCGEQALSLVDTL---IRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKL 238 (271)
Q Consensus 166 ~~g~~----~~~~~~~~~~~~~e~~~~~~~l---~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L 238 (271)
+.+.. .+++.+....+.+++...+..+ ..+.++++||||++..++ +.++.+. .....+++.+...++.|
T Consensus 95 ~~~~~~~~~l~~I~v~~~~~~~~l~~~L~~l~~~l~~~~ikLIVIDSIaalf-r~e~~~~---~~~~~R~~~L~~~~~~L 170 (256)
T PF08423_consen 95 RFGLDPEEILDNIFVIRVFDLEELLELLEQLPKLLSESKIKLIVIDSIAALF-RSEFSGR---GDLAERQRMLARLARIL 170 (256)
T ss_dssp HTTS-HHHHHHTEEEEE-SSHHHHHHHHHHHHHHHHHSCEEEEEEETSSHHH-HHHSGST---TTHHHHHHHHHHHHHHH
T ss_pred ccccccchhhhceeeeecCCHHHHHHHHHHHHhhccccceEEEEecchHHHH-HHHHccc---hhhHHHHHHHHHHHHHH
Confidence 44543 3566777777887776655443 345789999999999887 3444321 12335677888999999
Q ss_pred HHHHhhcCcEEEEEccccccc----------chhhhhhhccCC
Q 024152 239 SHSLSLSQTILIFINQVFSIN----------LNKIIDESSGHL 271 (271)
Q Consensus 239 ~~lake~~~~Vi~~sql~~~~----------~~~~l~~s~~~~ 271 (271)
+.+|++++++||++||+.+.+ .-|.++.+|+|+
T Consensus 171 ~~lA~~~~iaVvvTNqv~~~~~~~~~~~~~~~~PalG~~w~h~ 213 (256)
T PF08423_consen 171 KRLARKYNIAVVVTNQVTTKIDSNSLFDGDRLKPALGHSWSHA 213 (256)
T ss_dssp HHHHHHTT-EEEEEEEECSSTT----SSTTSEEETTHHHHHHH
T ss_pred HHHHHhCCceEEeeceeeecCCcccccccccceecCcchhhhh
Confidence 999999999999999999653 446899999984
No 30
>PTZ00035 Rad51 protein; Provisional
Probab=99.91 E-value=4e-23 Score=186.76 Aligned_cols=171 Identities=26% Similarity=0.428 Sum_probs=134.8
Q ss_pred CCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHh-h-----cCCeEEEEcCCCCCCH----HHHH
Q 024152 96 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQ-R-----QGGYCVFIDAEHALDP----SLAE 165 (271)
Q Consensus 96 ~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~-~-----~~g~v~~~~~e~~~~~----~~~~ 165 (271)
....++||++.||.+++ ||+++|++++|+|+||+|||+|+++++.+.. + .+++|+|+++|..+.+ .+++
T Consensus 96 ~~~~isTG~~~LD~lLg-GGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia~ 174 (337)
T PTZ00035 96 NIIRITTGSTQLDKLLG-GGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIAE 174 (337)
T ss_pred cCccccCCcHHHHHHhC-CCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHHH
Confidence 46789999999999999 9999999999999999999999999998877 2 4678999999988765 3455
Q ss_pred HcCCcC----CcceecCCCCHHHHHHHHHH---HHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHH
Q 024152 166 TIGVKT----ENLLLAQPDCGEQALSLVDT---LIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKL 238 (271)
Q Consensus 166 ~~g~~~----~~~~~~~~~~~~e~~~~~~~---l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L 238 (271)
.+++.+ +++.+....+.++....+.. .....+++++|||+++.++ +.++.++ + ....+++.+.+.++.|
T Consensus 175 ~~g~~~~~~l~nI~~~~~~~~e~~~~~l~~~~~~l~~~~~~lvVIDSital~-r~~~~~~-~--~~~~r~~~l~~~~~~L 250 (337)
T PTZ00035 175 RFGLDPEDVLDNIAYARAYNHEHQMQLLSQAAAKMAEERFALLIVDSATALF-RVDYSGR-G--ELAERQQHLGKFLRAL 250 (337)
T ss_pred HhCCChHhHhhceEEEccCCHHHHHHHHHHHHHHhhccCccEEEEECcHHhh-hhhccCc-c--cHHHHHHHHHHHHHHH
Confidence 667664 55666777777766655433 3345789999999999987 3444332 1 1234566788899999
Q ss_pred HHHHhhcCcEEEEEccccccc----------chhhhhhhccCC
Q 024152 239 SHSLSLSQTILIFINQVFSIN----------LNKIIDESSGHL 271 (271)
Q Consensus 239 ~~lake~~~~Vi~~sql~~~~----------~~~~l~~s~~~~ 271 (271)
+++|++++++|+++||++..+ ..|..+..|+|+
T Consensus 251 ~~la~~~~vavvvtNqv~~~~~~~~~~~~~~~~p~gG~~~~h~ 293 (337)
T PTZ00035 251 QKLADEFNVAVVITNQVMADVDGASMFVADPKKPIGGHIIAHA 293 (337)
T ss_pred HHHHHHcCcEEEEecceEEecCCccccCCCCccCCchHHHHhh
Confidence 999999999999999999763 356788899884
No 31
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=99.90 E-value=1.2e-23 Score=184.31 Aligned_cols=158 Identities=25% Similarity=0.255 Sum_probs=117.7
Q ss_pred ccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcC-CeEEEEcCCCCCCH----HHHHHcCCcCCc
Q 024152 99 VVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQG-GYCVFIDAEHALDP----SLAETIGVKTEN 173 (271)
Q Consensus 99 ~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~-g~v~~~~~e~~~~~----~~~~~~g~~~~~ 173 (271)
||||||+.||.+++ |+.+|++++|+|+||+|||+|+++++.+++..+ .+|+||+.|++..+ .++...++...+
T Consensus 1 Gi~TG~~~LD~~lg--G~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l~~R~la~~s~v~~~~ 78 (259)
T PF03796_consen 1 GIPTGFPALDRLLG--GLRPGELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEELAARLLARLSGVPYNK 78 (259)
T ss_dssp SB-SSTHHHHHHHS--SB-TT-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHHHHHHHHHHHTSTHHH
T ss_pred CCCCChHHHHHHhc--CCCcCcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhhcchhhh
Confidence 68999999999998 999999999999999999999999999999874 69999999988654 333334443211
Q ss_pred -------------------------cee--cCCCCHHHHHHHHHHHHhc-CCccEEEEcchhhhcCCCccCCccchhhHH
Q 024152 174 -------------------------LLL--AQPDCGEQALSLVDTLIRS-GSVDVVVVDSVAALVPKGELDGEMGDAHMA 225 (271)
Q Consensus 174 -------------------------~~~--~~~~~~~e~~~~~~~l~~~-~~~~lvvID~l~~~~~~~~l~~~~g~~~~~ 225 (271)
+.+ .+..+.+++.+.++.+... .++++|+|||++.+.+.... .
T Consensus 79 i~~g~l~~~e~~~~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~~-----~---- 149 (259)
T PF03796_consen 79 IRSGDLSDEEFERLQAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSEDSS-----D---- 149 (259)
T ss_dssp HHCCGCHHHHHHHHHHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSCSS-----S----
T ss_pred hhccccCHHHHHHHHHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCCCCC-----C----
Confidence 121 1345778888888888777 78999999999998753211 1
Q ss_pred HHHHHHHHHHHHHHHHHhhcCcEEEEEcccccc--------cchhhhhhh
Q 024152 226 MQARLMSQALRKLSHSLSLSQTILIFINQVFSI--------NLNKIIDES 267 (271)
Q Consensus 226 ~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~~--------~~~~~l~~s 267 (271)
.+...+..+++.|+.+|+++++|||+++|+... |.+.++++|
T Consensus 150 ~~~~~~~~i~~~Lk~lA~~~~i~vi~~sQlnr~~~~~~~~~p~l~dl~~s 199 (259)
T PF03796_consen 150 NRRQEIGEISRELKALAKELNIPVIALSQLNREAEDREDKRPSLSDLRES 199 (259)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTSEEEEEEEBSGGGGGSSSCS--HHHHCST
T ss_pred CHHHHHHHHHHHHHHHHHHcCCeEEEccccChhhhcccccccchhhhhhh
Confidence 122557788889999999999999999999743 445566655
No 32
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=99.89 E-value=1.9e-22 Score=172.15 Aligned_cols=154 Identities=28% Similarity=0.402 Sum_probs=113.1
Q ss_pred cccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCC----cCCcce
Q 024152 100 VSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGV----KTENLL 175 (271)
Q Consensus 100 i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~----~~~~~~ 175 (271)
+|||+++||.+++ ||+++|+++.|.|+||+|||||+++++.+.+..+++|+|++.|..+...+.+..+. ...++.
T Consensus 1 i~TGi~~LD~~l~-GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~~~~~~~~~~~~~~~~~~~~~~ 79 (218)
T cd01394 1 LPTGCKGLDELLG-GGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGLSSERFRQIAGDRPERAASSII 79 (218)
T ss_pred CCcchhHHHHHhc-CCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHhHChHhhhcCEE
Confidence 5899999999998 99999999999999999999999999999988888999999887665333222221 224555
Q ss_pred ecCCCCHHHHHHHHHHHH--hcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEc
Q 024152 176 LAQPDCGEQALSLVDTLI--RSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFIN 253 (271)
Q Consensus 176 ~~~~~~~~e~~~~~~~l~--~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~s 253 (271)
+.++.+..++...+..+. ...++++++||+++.++. .+.... .....+.+.+.+.++.|+.+|++++++||+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~lvvIDsi~~l~~-~~~~~~---~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~t~ 155 (218)
T cd01394 80 VFEPMDFNEQGRAIQETETFADEKVDLVVVDSATALYR-LELGDD---DTTIKNYRELAKQLTFLLWLARKHDVAVVITN 155 (218)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhcCCcEEEEechHHhhh-HHhcCc---cchHHHHHHHHHHHHHHHHHHHHhCCEEEEec
Confidence 656666555544333221 123589999999998862 222211 11124455677888889999999999999999
Q ss_pred ccccc
Q 024152 254 QVFSI 258 (271)
Q Consensus 254 ql~~~ 258 (271)
|+...
T Consensus 156 q~~~~ 160 (218)
T cd01394 156 QVYSD 160 (218)
T ss_pred CCEEc
Confidence 99753
No 33
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=99.88 E-value=7.9e-22 Score=169.11 Aligned_cols=153 Identities=30% Similarity=0.490 Sum_probs=113.7
Q ss_pred ccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHH-cC----CcCCc
Q 024152 99 VVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAET-IG----VKTEN 173 (271)
Q Consensus 99 ~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~-~g----~~~~~ 173 (271)
.++||+++||.+++ ||+++|.++.|.|+||+|||+|+++++.+.+..+++|+|++.| .+....... .. -..++
T Consensus 4 ~i~tGi~~lD~~l~-GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e-~~~~~r~~~~~~~~~~~~~~~ 81 (225)
T PRK09361 4 RLPTGCKMLDELLG-GGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE-GLSPERFKQIAGEDFEELLSN 81 (225)
T ss_pred cccCCcHHHHHHhc-CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC-CCCHHHHHHHHhhChHhHhhC
Confidence 58999999999998 9999999999999999999999999999998888899999999 443322111 11 12345
Q ss_pred ceecCCCCHHHHHHHHHH---HHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEE
Q 024152 174 LLLAQPDCGEQALSLVDT---LIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILI 250 (271)
Q Consensus 174 ~~~~~~~~~~e~~~~~~~---l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi 250 (271)
+.+..+.+.+++...++. +.. .+++++|||++..++. .++.+. .....+.+.+.+.+..|++++++++++|+
T Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~-~~~~lvVIDsi~al~~-~~~~~~---~~~~~~~~~l~~~l~~L~~~a~~~~v~vi 156 (225)
T PRK09361 82 IIIFEPSSFEEQSEAIRKAEKLAK-ENVGLIVLDSATSLYR-LELEDE---EDNSKLNRELGRQLTHLLKLARKHDLAVV 156 (225)
T ss_pred eEEEeCCCHHHHHHHHHHHHHHHH-hcccEEEEeCcHHHhH-HHhcCC---ccHHHHHHHHHHHHHHHHHHHHHhCCEEE
Confidence 666666666655444333 232 6899999999998763 222111 11123456677888889999999999999
Q ss_pred EEcccccc
Q 024152 251 FINQVFSI 258 (271)
Q Consensus 251 ~~sql~~~ 258 (271)
+++|....
T Consensus 157 ~tnq~~~~ 164 (225)
T PRK09361 157 ITNQVYSD 164 (225)
T ss_pred EEccceec
Confidence 99998864
No 34
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=99.88 E-value=8.3e-22 Score=169.80 Aligned_cols=166 Identities=31% Similarity=0.489 Sum_probs=123.4
Q ss_pred cccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhc------CCeEEEEcCCCCCCHH----HHHHcCC
Q 024152 100 VSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ------GGYCVFIDAEHALDPS----LAETIGV 169 (271)
Q Consensus 100 i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~------~g~v~~~~~e~~~~~~----~~~~~g~ 169 (271)
+|||++.||.+++ ||+++|++++|.|+||+|||+|+++++.+.... ++.|+|++.|..+... +.+..++
T Consensus 1 ~~tG~~~lD~~l~-GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~ 79 (235)
T cd01123 1 LTTGSKALDELLG-GGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGL 79 (235)
T ss_pred CCCCchhhHhhcc-CCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhcc
Confidence 5899999999999 999999999999999999999999999876543 3689999999876542 2333444
Q ss_pred cC----CcceecCCCCHHHHHHH---HHHHHhcC-CccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHH
Q 024152 170 KT----ENLLLAQPDCGEQALSL---VDTLIRSG-SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHS 241 (271)
Q Consensus 170 ~~----~~~~~~~~~~~~e~~~~---~~~l~~~~-~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~l 241 (271)
.+ +++.+....+.+++... +.....+. +++++|||+++.++. ..+.+ ......+.+.+.+.++.|+++
T Consensus 80 ~~~~~~~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~-~~~~~---~~~~~~r~~~l~~~~~~L~~l 155 (235)
T cd01123 80 DPEEVLDNIYVARAYNSDHQLQLLEELEAILIESSRIKLVIVDSVTALFR-AEFDG---RGELAERQQHLAKLLRTLKRL 155 (235)
T ss_pred ChHhHhcCEEEEecCCHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHH-HHhcC---CccHHHHHHHHHHHHHHHHHH
Confidence 33 45566666666665443 33444455 899999999998762 22211 111235566788899999999
Q ss_pred HhhcCcEEEEEccccccc----------chhhhhhhccC
Q 024152 242 LSLSQTILIFINQVFSIN----------LNKIIDESSGH 270 (271)
Q Consensus 242 ake~~~~Vi~~sql~~~~----------~~~~l~~s~~~ 270 (271)
|++++++|++++|....+ ..+.++..|.|
T Consensus 156 a~~~~~avl~tn~~~~~~~~~~~~~~~~~~p~lG~~w~~ 194 (235)
T cd01123 156 ADEFNVAVVITNQVTARPDGAAMFGGDPKKPAGGNIWAH 194 (235)
T ss_pred HHHhCCEEEEeccEeecCCcccccCCCCeeccCccHhhC
Confidence 999999999999998643 24667888877
No 35
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=99.88 E-value=1.5e-21 Score=175.29 Aligned_cols=171 Identities=27% Similarity=0.444 Sum_probs=128.5
Q ss_pred CCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh------cCCeEEEEcCCCCCCHH----HHH
Q 024152 96 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR------QGGYCVFIDAEHALDPS----LAE 165 (271)
Q Consensus 96 ~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~------~~g~v~~~~~e~~~~~~----~~~ 165 (271)
.+..++||.+.+|.+++ ||++.|.+++|+|+||+|||+|+++++.+++. .++.|+|+++|..+... ++.
T Consensus 73 s~~~~~Tg~~~lD~~l~-GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~~~ 151 (310)
T TIGR02236 73 TIGKITTGSKELDELLG-GGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMAE 151 (310)
T ss_pred cCCeecCCCHHHHHHhc-CCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHHHH
Confidence 56779999999999999 99999999999999999999999999998763 24589999999977652 344
Q ss_pred HcCCcC----CcceecCCCCHHHH---HHHHHHHHhcC--CccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHH
Q 024152 166 TIGVKT----ENLLLAQPDCGEQA---LSLVDTLIRSG--SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALR 236 (271)
Q Consensus 166 ~~g~~~----~~~~~~~~~~~~e~---~~~~~~l~~~~--~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r 236 (271)
.++++. +++.+....+.++. +..+..+..+. .++++|||+++.++ +.++.+. .....+++.+.+.+.
T Consensus 152 ~~gl~~~~~~~~i~i~~~~~~~~~~~lld~l~~~i~~~~~~~~lVVIDSisa~~-r~e~~~~---~~~~~r~~~l~~~~~ 227 (310)
T TIGR02236 152 ARGLDPDEVLKNIYVARAYNSNHQMLLVEKAEDLIKELNNPVKLLIVDSLTSHF-RAEYVGR---GALAERQQKLNKHLH 227 (310)
T ss_pred HcCCCHHHHhhceEEEecCCHHHHHHHHHHHHHHHHhcCCCceEEEEecchHhh-hHhhcCc---hhHHHHHHHHHHHHH
Confidence 556653 44555555554442 22233344443 48899999999886 3444332 112245566778888
Q ss_pred HHHHHHhhcCcEEEEEccccccc-------chhhhhhhccCC
Q 024152 237 KLSHSLSLSQTILIFINQVFSIN-------LNKIIDESSGHL 271 (271)
Q Consensus 237 ~L~~lake~~~~Vi~~sql~~~~-------~~~~l~~s~~~~ 271 (271)
.|+.+|++++++|+++||++..+ ..+..+..|+|+
T Consensus 228 ~L~~~a~~~~~~v~~tnqv~~~~~~~~~~~~~~~~G~~~~h~ 269 (310)
T TIGR02236 228 DLLRLADLYNAAVVVTNQVMARPDAFFGDPTRPIGGHILGHA 269 (310)
T ss_pred HHHHHHHHhCcEEEEeceeeecCccccCccccCCcchhhhhh
Confidence 89999999999999999998764 467889999995
No 36
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=99.87 E-value=2.2e-21 Score=177.25 Aligned_cols=152 Identities=27% Similarity=0.394 Sum_probs=122.0
Q ss_pred CCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCH--HHHHHcCCcCCc
Q 024152 96 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--SLAETIGVKTEN 173 (271)
Q Consensus 96 ~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~--~~~~~~g~~~~~ 173 (271)
...+++||+++||++++ ||+++|+++.|.|+||+|||||+++++.+.+..+++|+|++.|++..+ .+++++++..++
T Consensus 60 ~~~ri~TGi~eLD~vLg-GGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~ 138 (372)
T cd01121 60 EEERIPTGIEELDRVLG-GGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTEN 138 (372)
T ss_pred ccCccccCCHHHHHhhc-CCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCccc
Confidence 45689999999999999 999999999999999999999999999999988889999999877654 346678888888
Q ss_pred ceecCCCCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEc
Q 024152 174 LLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFIN 253 (271)
Q Consensus 174 ~~~~~~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~s 253 (271)
+.+....+.+++.+.+. ..++++++||+++.++. .+....+|.. . .+.+.+..|.+++++.++++++++
T Consensus 139 l~l~~e~~le~I~~~i~----~~~~~lVVIDSIq~l~~-~~~~~~~g~~---~---qvr~~~~~L~~lak~~~itvilvg 207 (372)
T cd01121 139 LYLLAETNLEDILASIE----ELKPDLVIIDSIQTVYS-SELTSAPGSV---S---QVRECTAELMRFAKERNIPIFIVG 207 (372)
T ss_pred EEEEccCcHHHHHHHHH----hcCCcEEEEcchHHhhc-cccccCCCCH---H---HHHHHHHHHHHHHHHcCCeEEEEe
Confidence 88777677777666543 45799999999999863 3332222322 1 244556677888999999999999
Q ss_pred cccccc
Q 024152 254 QVFSIN 259 (271)
Q Consensus 254 ql~~~~ 259 (271)
|.++..
T Consensus 208 hvtk~g 213 (372)
T cd01121 208 HVTKEG 213 (372)
T ss_pred eccCCC
Confidence 988653
No 37
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=99.87 E-value=1.8e-21 Score=182.44 Aligned_cols=151 Identities=23% Similarity=0.331 Sum_probs=121.2
Q ss_pred CCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCH--HHHHHcCCcCCc
Q 024152 96 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--SLAETIGVKTEN 173 (271)
Q Consensus 96 ~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~--~~~~~~g~~~~~ 173 (271)
...+++||+++||++++ ||+++|++++|.|+||+|||||+++++.+.+..+++|+|++.|++..+ ..+.+++++.++
T Consensus 72 ~~~ri~TGi~~LD~vLg-GGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~ 150 (454)
T TIGR00416 72 EVPRFSSGFGELDRVLG-GGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPN 150 (454)
T ss_pred ccCccccCcHHHHHHhc-CCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHH
Confidence 46789999999999999 999999999999999999999999999999888889999999987665 345678888888
Q ss_pred ceecCCCCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEc
Q 024152 174 LLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFIN 253 (271)
Q Consensus 174 ~~~~~~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~s 253 (271)
+.+....+.+++...+ .+.++++++||+++.++. .+....+|.. .+ +.+.+..|+++|++.|+|+++++
T Consensus 151 l~~~~e~~~~~I~~~i----~~~~~~~vVIDSIq~l~~-~~~~~~~g~~---~q---~r~~~~~L~~~ak~~giTvllt~ 219 (454)
T TIGR00416 151 LYVLSETNWEQICANI----EEENPQACVIDSIQTLYS-PDISSAPGSV---SQ---VRECTAELMRLAKTRGIAIFIVG 219 (454)
T ss_pred eEEcCCCCHHHHHHHH----HhcCCcEEEEecchhhcc-cccccCCCCH---HH---HHHHHHHHHHHHHHhCCEEEEEe
Confidence 8887777777666554 345799999999999873 3333323322 22 33456677788999999999999
Q ss_pred ccccc
Q 024152 254 QVFSI 258 (271)
Q Consensus 254 ql~~~ 258 (271)
|..+.
T Consensus 220 hvtke 224 (454)
T TIGR00416 220 HVTKE 224 (454)
T ss_pred ccccC
Confidence 98754
No 38
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=99.87 E-value=4.9e-21 Score=172.45 Aligned_cols=171 Identities=29% Similarity=0.469 Sum_probs=127.5
Q ss_pred CCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhc------CCeEEEEcCCCCCCH----HHHH
Q 024152 96 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ------GGYCVFIDAEHALDP----SLAE 165 (271)
Q Consensus 96 ~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~------~g~v~~~~~e~~~~~----~~~~ 165 (271)
.+..++||+++||.+++ ||+++|.+++|+|+||+|||+|+++++.+++.. +++++|+++|..+.. .++.
T Consensus 80 s~~~~~Tg~~~lD~~l~-GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~ 158 (317)
T PRK04301 80 NVGKITTGSKELDELLG-GGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAE 158 (317)
T ss_pred cCCccCCCCHHHHHHhc-CCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHH
Confidence 46779999999999999 999999999999999999999999999887642 358999999997664 3345
Q ss_pred HcCCcCC----cceecCCCCHHHH---HHHHHHHHhc-CCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHH
Q 024152 166 TIGVKTE----NLLLAQPDCGEQA---LSLVDTLIRS-GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRK 237 (271)
Q Consensus 166 ~~g~~~~----~~~~~~~~~~~e~---~~~~~~l~~~-~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~ 237 (271)
.++++++ ++.+....+.++. +..+..+..+ .+++++|||+++.++ +.++.+. + ....+++.+.+.+..
T Consensus 159 ~~g~~~~~~l~~i~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lvVIDSisa~~-~~~~~~~-~--~~~~r~~~l~~~~~~ 234 (317)
T PRK04301 159 ALGLDPDEVLDNIHVARAYNSDHQMLLAEKAEELIKEGENIKLVIVDSLTAHF-RAEYVGR-G--NLAERQQKLNKHLHD 234 (317)
T ss_pred HcCCChHhhhccEEEEeCCCHHHHHHHHHHHHHHHhccCceeEEEEECchHHh-hhhccCC-c--cHHHHHHHHHHHHHH
Confidence 5677653 3445555544433 3334444444 679999999999987 3433321 1 112345557777888
Q ss_pred HHHHHhhcCcEEEEEccccccc-------chhhhhhhccCC
Q 024152 238 LSHSLSLSQTILIFINQVFSIN-------LNKIIDESSGHL 271 (271)
Q Consensus 238 L~~lake~~~~Vi~~sql~~~~-------~~~~l~~s~~~~ 271 (271)
|+++|++++++||+++|..+.+ ..+..+..|+|+
T Consensus 235 L~~la~~~~vavl~tnqv~~~~~~~~~~~~~~~~G~~~~~~ 275 (317)
T PRK04301 235 LLRLADLYNAAVVVTNQVMARPDAFFGDPTQPIGGHILGHT 275 (317)
T ss_pred HHHHHHHhCCEEEEeceEEeccccccCccccCCcchHhHhh
Confidence 9999999999999999988754 357778888884
No 39
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=2.9e-21 Score=173.51 Aligned_cols=150 Identities=29% Similarity=0.424 Sum_probs=130.0
Q ss_pred CCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCH--HHHHHcCCcCCc
Q 024152 96 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--SLAETIGVKTEN 173 (271)
Q Consensus 96 ~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~--~~~~~~g~~~~~ 173 (271)
..++++||+.+||+.+| ||+-+|.++.|.|.||.|||||+++++..++..+ +|+|+++|++..+ .++.++++..++
T Consensus 71 ~~~Ri~tg~~EldRVLG-GG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~QiklRA~RL~~~~~~ 148 (456)
T COG1066 71 EEPRISTGIEELDRVLG-GGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQIKLRADRLGLPTNN 148 (456)
T ss_pred ecccccCChHHHHhhhc-CCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHHHHHHHHhCCCccc
Confidence 56889999999999999 9999999999999999999999999999999877 8999999999876 778899999999
Q ss_pred ceecCCCCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEc
Q 024152 174 LLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFIN 253 (271)
Q Consensus 174 ~~~~~~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~s 253 (271)
+.+...++.+++++.+.. .+++++||||+|.++ .+++...||.- .+.|+. ...|.++||+.|++++++-
T Consensus 149 l~l~aEt~~e~I~~~l~~----~~p~lvVIDSIQT~~-s~~~~SapGsV---sQVRe~---t~~L~~~AK~~~i~~fiVG 217 (456)
T COG1066 149 LYLLAETNLEDIIAELEQ----EKPDLVVIDSIQTLY-SEEITSAPGSV---SQVREV---AAELMRLAKTKNIAIFIVG 217 (456)
T ss_pred eEEehhcCHHHHHHHHHh----cCCCEEEEeccceee-cccccCCCCcH---HHHHHH---HHHHHHHHHHcCCeEEEEE
Confidence 999988889988876554 689999999999998 46666666653 555554 4555666999999999999
Q ss_pred ccccc
Q 024152 254 QVFSI 258 (271)
Q Consensus 254 ql~~~ 258 (271)
|+++.
T Consensus 218 HVTKe 222 (456)
T COG1066 218 HVTKE 222 (456)
T ss_pred EEccc
Confidence 99964
No 40
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=99.86 E-value=7.2e-21 Score=166.62 Aligned_cols=144 Identities=23% Similarity=0.319 Sum_probs=110.3
Q ss_pred ccccCcHHHHHHh--------------cCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCH---
Q 024152 99 VVSTGSFALDIAL--------------GTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--- 161 (271)
Q Consensus 99 ~i~Tg~~~LD~~l--------------~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~--- 161 (271)
++|||++.||.++ + ||+++|.++.|+|+||+|||+|+++++.+.+..+++++|++.|+....
T Consensus 3 ~~~tGi~glD~~l~~~~~~~~~~~~~~~-GGip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~~~~~~~ 81 (259)
T TIGR03878 3 GVPTGVEGLDELFFKVEIEEGKIVRKPL-GGIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESPANFVYT 81 (259)
T ss_pred CccCCchhHHHhhccccccccccccccC-CCeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCchHHHH
Confidence 6899999999999 5 799999999999999999999999999998888889999999975532
Q ss_pred ---HHHHHcCCcCC----cceecCCC-------CHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHH
Q 024152 162 ---SLAETIGVKTE----NLLLAQPD-------CGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQ 227 (271)
Q Consensus 162 ---~~~~~~g~~~~----~~~~~~~~-------~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~ 227 (271)
..+..+|++.+ ++.+.+.. +.++++..+...+.+.+++++|||+++.++.. ..
T Consensus 82 ~l~~~a~~~g~d~~~~~~~l~~id~~~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~~--------~~----- 148 (259)
T TIGR03878 82 SLKERAKAMGVDFDKIEENIILIDAASSTELRENVPNLLATLAYAIKEYKVKNTVIDSITGLYEA--------KE----- 148 (259)
T ss_pred HHHHHHHHcCCCHHHHhCCEEEEECCCchhhhhhHHHHHHHHHHHHHhhCCCEEEEcCchHhccc--------ch-----
Confidence 12455677653 34443332 24556666777777789999999999877521 00
Q ss_pred HHHHHHHHHHHHHHHhhcCcEEEEEccccc
Q 024152 228 ARLMSQALRKLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 228 ~~~l~~~~r~L~~lake~~~~Vi~~sql~~ 257 (271)
....+.++.|..++++.++|+++++|...
T Consensus 149 -~~~r~~~~~L~~~lk~~~~t~ll~~e~~~ 177 (259)
T TIGR03878 149 -MMAREIVRQLFNFMKKWYQTALFVSQKRS 177 (259)
T ss_pred -HHHHHHHHHHHHHHHHcCCeEEEEecccc
Confidence 11335667777888999999999999654
No 41
>PRK11823 DNA repair protein RadA; Provisional
Probab=99.86 E-value=1.2e-20 Score=176.74 Aligned_cols=151 Identities=29% Similarity=0.406 Sum_probs=120.7
Q ss_pred CCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCH--HHHHHcCCcCCc
Q 024152 96 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--SLAETIGVKTEN 173 (271)
Q Consensus 96 ~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~--~~~~~~g~~~~~ 173 (271)
...+++||+++||++++ ||+++|+++.|.|+||+|||||+++++.+.+..+++|+|++.|++..+ .++++++++.++
T Consensus 58 ~~~ri~TGi~~LD~~Lg-GGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~ 136 (446)
T PRK11823 58 EEPRISTGIGELDRVLG-GGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDN 136 (446)
T ss_pred cCCcccCCcHHHHHHhc-CCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhc
Confidence 45789999999999999 999999999999999999999999999999877889999999987765 346778888888
Q ss_pred ceecCCCCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEc
Q 024152 174 LLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFIN 253 (271)
Q Consensus 174 ~~~~~~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~s 253 (271)
+.+....+.++++..+ .+.+++++|||+++.++. .++.+.+|.. . .+.+.+..|.+++++.++++++++
T Consensus 137 l~~~~e~~l~~i~~~i----~~~~~~lVVIDSIq~l~~-~~~~~~~g~~---~---qvr~~~~~L~~~ak~~~itvilv~ 205 (446)
T PRK11823 137 LYLLAETNLEAILATI----EEEKPDLVVIDSIQTMYS-PELESAPGSV---S---QVRECAAELMRLAKQRGIAVFLVG 205 (446)
T ss_pred EEEeCCCCHHHHHHHH----HhhCCCEEEEechhhhcc-ccccCCCCCH---H---HHHHHHHHHHHHHHHcCCEEEEEe
Confidence 7777666666666554 345799999999998873 3333323322 1 234456667778999999999999
Q ss_pred ccccc
Q 024152 254 QVFSI 258 (271)
Q Consensus 254 ql~~~ 258 (271)
|..+.
T Consensus 206 hvtk~ 210 (446)
T PRK11823 206 HVTKE 210 (446)
T ss_pred eccCC
Confidence 98764
No 42
>PRK05973 replicative DNA helicase; Provisional
Probab=99.85 E-value=9.5e-21 Score=162.60 Aligned_cols=171 Identities=21% Similarity=0.248 Sum_probs=121.1
Q ss_pred HHHHHHHHHHhcCCCceeeccccCCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCC
Q 024152 69 LQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGG 148 (271)
Q Consensus 69 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g 148 (271)
+.++++++-...|-.+|..+..... -..-.|.++| ||++|++++|+|+||+|||+|+++++.+.+.++.
T Consensus 25 ~~~~~~~~a~~~g~~~w~~~~~~~~---------~~~p~~~l~G--Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge 93 (237)
T PRK05973 25 LHEALDRIAAEEGFSSWSLLAAKAA---------ATTPAEELFS--QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGR 93 (237)
T ss_pred HHHHHHHHHHHhccchHHHHHHhcc---------CCCCHHHhcC--CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCC
Confidence 5567777777667666665542211 1122677776 9999999999999999999999999999988888
Q ss_pred eEEEEcCCCCCCH--HHHHHcCCcCCcc---eec---CCCCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccc
Q 024152 149 YCVFIDAEHALDP--SLAETIGVKTENL---LLA---QPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMG 220 (271)
Q Consensus 149 ~v~~~~~e~~~~~--~~~~~~g~~~~~~---~~~---~~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g 220 (271)
+|+||+.|++... .....+|++.+++ ... +..+.+++ ++++..+.+.++|||||++.+...
T Consensus 94 ~vlyfSlEes~~~i~~R~~s~g~d~~~~~~~~~~d~~d~~~~~~i---i~~l~~~~~~~lVVIDsLq~l~~~-------- 162 (237)
T PRK05973 94 TGVFFTLEYTEQDVRDRLRALGADRAQFADLFEFDTSDAICADYI---IARLASAPRGTLVVIDYLQLLDQR-------- 162 (237)
T ss_pred eEEEEEEeCCHHHHHHHHHHcCCChHHhccceEeecCCCCCHHHH---HHHHHHhhCCCEEEEEcHHHHhhc--------
Confidence 9999999988654 3345567776543 111 12334443 344444567899999999988521
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcccccc--------cchhhhhh
Q 024152 221 DAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFSI--------NLNKIIDE 266 (271)
Q Consensus 221 ~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~~--------~~~~~l~~ 266 (271)
. ...++..+++.|+.+|++.|+|||+++|+... |.+.++|.
T Consensus 163 ~-----~~~el~~~~~~Lk~~Ak~~gitvIl~sQl~r~~e~~~~~~P~laDlR~ 211 (237)
T PRK05973 163 R-----EKPDLSVQVRALKSFARERGLIIVFISQIDRSFDPSAKPLPDIRDVRL 211 (237)
T ss_pred c-----cchhHHHHHHHHHHHHHhCCCeEEEEecCccccccCCCCCCChhhcCC
Confidence 0 01235566788999999999999999999843 56666654
No 43
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=99.85 E-value=1.5e-20 Score=162.67 Aligned_cols=144 Identities=22% Similarity=0.297 Sum_probs=110.6
Q ss_pred ccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCH--HHHHHcCCcCCc---
Q 024152 99 VVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--SLAETIGVKTEN--- 173 (271)
Q Consensus 99 ~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~--~~~~~~g~~~~~--- 173 (271)
.++||++.||.+++ ||+++|.++.|.|+||+|||+|+++++...+..+.+++|++.|+.... ..++.+|++.+.
T Consensus 2 ri~tGi~~LD~~l~-GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i~~~~~~~g~~~~~~~~ 80 (237)
T TIGR03877 2 RVKTGIPGMDEILH-GGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQVRRNMAQFGWDVRKYEE 80 (237)
T ss_pred ccccCcHhHHHHhc-CCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHHHHHHHHhCCCHHHHhh
Confidence 48999999999998 999999999999999999999999999988777889999999887654 234456665432
Q ss_pred ---ceec-------------------CCCCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHH
Q 024152 174 ---LLLA-------------------QPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLM 231 (271)
Q Consensus 174 ---~~~~-------------------~~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l 231 (271)
+.+. .+.+.++++..++....+.+.++++||+++.++... . . ..
T Consensus 81 ~g~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSls~l~~~~--------~---~---~~ 146 (237)
T TIGR03877 81 EGKFAIVDAFTGGIGEAAEREKYVVKDPTDVRELIDVLRQAIRDINAKRVVIDSVTTLYITK--------P---A---MA 146 (237)
T ss_pred cCCEEEEeccccccccccccccccccCcccHHHHHHHHHHHHHHhCCCEEEEcChhHhhcCC--------h---H---HH
Confidence 1111 223566777777777777789999999999875311 0 0 11
Q ss_pred HHHHHHHHHHHhhcCcEEEEEccccc
Q 024152 232 SQALRKLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 232 ~~~~r~L~~lake~~~~Vi~~sql~~ 257 (271)
.+.+..|++++++.|+|+++++|...
T Consensus 147 r~~l~~l~~~lk~~~~t~llt~~~~~ 172 (237)
T TIGR03877 147 RSIVMQLKRVLSGLGCTSIFVSQVSV 172 (237)
T ss_pred HHHHHHHHHHHHhCCCEEEEEECccc
Confidence 24567777778999999999999763
No 44
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=99.84 E-value=2.9e-20 Score=163.68 Aligned_cols=152 Identities=15% Similarity=0.149 Sum_probs=115.5
Q ss_pred CCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEcCCCCCCHHH----HHHcCCcC
Q 024152 97 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHALDPSL----AETIGVKT 171 (271)
Q Consensus 97 ~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~-~g~v~~~~~e~~~~~~~----~~~~g~~~ 171 (271)
..++|||++.||.+++ |+++|++++|.|+||+|||||+.+++.+++.. +.+|+|++.|+...... +...++..
T Consensus 10 ~~~~~tg~~~Ld~~~g--G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~~~~~~~r~~~~~~~~~~ 87 (271)
T cd01122 10 NEEVWWPFPVLNKLTK--GLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRTARRLLGQYAGKRL 87 (271)
T ss_pred ccCCCCCcceeeeeeE--EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccCHHHHHHHHHHHHhCCCc
Confidence 4589999999999997 99999999999999999999999999998877 77999999998754322 22123322
Q ss_pred C------------------------cceecC---CCCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhH
Q 024152 172 E------------------------NLLLAQ---PDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHM 224 (271)
Q Consensus 172 ~------------------------~~~~~~---~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~ 224 (271)
. .+.+.+ ..+.++++..++.+..++++++||||+++.+..... ..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~d~~~~~~~~~i~~~i~~~~~~~~~~~vvID~l~~l~~~~~--------~~ 159 (271)
T cd01122 88 HLPDTVFIYTLEEFDAAFDEFEGTGRLFMYDSFGEYSMDSVLEKVRYMAVSHGIQHIIIDNLSIMVSDER--------AS 159 (271)
T ss_pred ccCCccccccHHHHHHHHHHhcCCCcEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEECCHHHHhccCC--------Cc
Confidence 1 122222 225778888888887778999999999999863110 00
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCcEEEEEcccccc
Q 024152 225 AMQARLMSQALRKLSHSLSLSQTILIFINQVFSI 258 (271)
Q Consensus 225 ~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~~ 258 (271)
......+..+++.|+.+|++++|||++++|+...
T Consensus 160 ~~~~~~~~~~~~~L~~la~~~~vtvll~sq~~~~ 193 (271)
T cd01122 160 GDERKALDEIMTKLRGFATEHGIHITLVSHLRRP 193 (271)
T ss_pred hhHHHHHHHHHHHHHHHHHHhCCEEEEEecccCc
Confidence 1223446678888999999999999999999853
No 45
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=99.83 E-value=1.4e-19 Score=153.38 Aligned_cols=144 Identities=29% Similarity=0.428 Sum_probs=105.0
Q ss_pred HHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHH-----cCCcCCcceecCCCC
Q 024152 107 LDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAET-----IGVKTENLLLAQPDC 181 (271)
Q Consensus 107 LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~-----~g~~~~~~~~~~~~~ 181 (271)
||.+++ ||+++|.++.|.|+||+|||+|+++++.+.+..+++|+|+++|. +....... .....+++.+.++.+
T Consensus 1 lD~~l~-GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~-~~~~rl~~~~~~~~~~~~~~i~~~~~~~ 78 (209)
T TIGR02237 1 IDELLG-GGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG-LSPERFKQIAEDRPERALSNFIVFEVFD 78 (209)
T ss_pred Chhhhc-CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC-CCHHHHHHHHHhChHHHhcCEEEEECCC
Confidence 689999 99999999999999999999999999999988888999999986 43322111 122235666666666
Q ss_pred HHHH---HHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcccccc
Q 024152 182 GEQA---LSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFSI 258 (271)
Q Consensus 182 ~~e~---~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~~ 258 (271)
..+. +..+..+....+++++|||++..++. .+..+. . ..+.+.+.+.+..|++++++.++++++++|....
T Consensus 79 ~~~~~~~~~~l~~~~~~~~~~lvVIDSis~l~~-~~~~~~---~--~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~~~~~ 152 (209)
T TIGR02237 79 FDEQGVAIQKTSKFIDRDSASLVVVDSFTALYR-LELSDD---R--ISRNRELARQLTLLLSLARKKNLAVVITNQVYTD 152 (209)
T ss_pred HHHHHHHHHHHHHHHhhcCccEEEEeCcHHHhH-HHhCCc---c--HHHHHHHHHHHHHHHHHHHHcCCEEEEEcccEEe
Confidence 5554 44444445556899999999998762 222111 1 1234456667777888899999999999998753
No 46
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=99.83 E-value=1.6e-19 Score=155.09 Aligned_cols=143 Identities=23% Similarity=0.292 Sum_probs=109.2
Q ss_pred cccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCH--HHHHHcCCcCCcc---
Q 024152 100 VSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--SLAETIGVKTENL--- 174 (271)
Q Consensus 100 i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~--~~~~~~g~~~~~~--- 174 (271)
++||+++||.+++ ||+++|++++|.|+||+|||+|+.+++...+..+.+++|++.|+.... ..++.+|++++++
T Consensus 2 i~tGi~~LD~~l~-GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~~~~~i~~~~~~~g~~~~~~~~~ 80 (229)
T TIGR03881 2 LSTGVEGLDKLLE-GGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEESRESIIRQAAQFGMDFEKAIEE 80 (229)
T ss_pred cCCChhhHHHhhc-CCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHHHHHhCCCHHHHhhc
Confidence 7899999999998 899999999999999999999999999877777778999999887654 2355677776532
Q ss_pred ---eec-------------CCCCHHHHHHHHHHHHhcC--CccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHH
Q 024152 175 ---LLA-------------QPDCGEQALSLVDTLIRSG--SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALR 236 (271)
Q Consensus 175 ---~~~-------------~~~~~~e~~~~~~~l~~~~--~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r 236 (271)
.+. ...+.+++...++...... ++++++||+++.+.. .+ + .. ..+.+.
T Consensus 81 ~~l~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~l~~-~~----~------~~---~r~~~~ 146 (229)
T TIGR03881 81 GKLVIIDALMKEKEDEWSLRELSIEELLNKVIEAKKYLGYGHARLVIDSMSAFWL-DK----P------AM---ARKYSY 146 (229)
T ss_pred CCEEEEEccccccccccccccCCHHHHHHHHHHHHHhhccCceEEEecCchhhhc-cC----h------HH---HHHHHH
Confidence 111 1245677888877776553 477999999998753 11 0 11 124566
Q ss_pred HHHHHHhhcCcEEEEEccccc
Q 024152 237 KLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 237 ~L~~lake~~~~Vi~~sql~~ 257 (271)
.|++++++.|+|+++++|...
T Consensus 147 ~l~~~l~~~~~tvil~~~~~~ 167 (229)
T TIGR03881 147 YLKRVLNRWNFTILLTSQYAI 167 (229)
T ss_pred HHHHHHHhCCCEEEEEecccc
Confidence 777788999999999999653
No 47
>PRK04328 hypothetical protein; Provisional
Probab=99.83 E-value=1e-19 Score=158.51 Aligned_cols=145 Identities=23% Similarity=0.288 Sum_probs=110.3
Q ss_pred CccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCH--HHHHHcCCcCCcc-
Q 024152 98 PVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--SLAETIGVKTENL- 174 (271)
Q Consensus 98 ~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~--~~~~~~g~~~~~~- 174 (271)
+.++||++.||.+++ ||+++|.++.|.|+||+|||+|+++++...+..+.+++|++.|+.... ..++.+|++.+.+
T Consensus 3 ~rv~tGi~~LD~lL~-GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d~~~~~ 81 (249)
T PRK04328 3 KRVKTGIPGMDEILY-GGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHPVQVRRNMRQFGWDVRKYE 81 (249)
T ss_pred ceecCCchhHHHHhc-CCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCCHHHHHHHHHHcCCCHHHHh
Confidence 568999999999999 999999999999999999999999999988878889999999887664 3345677754321
Q ss_pred -----eec-------------------CCCCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHH
Q 024152 175 -----LLA-------------------QPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARL 230 (271)
Q Consensus 175 -----~~~-------------------~~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~ 230 (271)
.+. ++.+.++++..++....+.++++++||+++.++.. .. ..
T Consensus 82 ~~~~l~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSlt~l~~~--------~~---~~--- 147 (249)
T PRK04328 82 EEGKFAIVDAFTGGIGSAAKREKYVVKDPDDVRELIDVLRQAIKDIGAKRVVIDSVSTLYLT--------KP---AM--- 147 (249)
T ss_pred hcCCEEEEeccccccccccccccccccCcccHHHHHHHHHHHHHhhCCCEEEEeChhHhhcC--------Ch---HH---
Confidence 111 12345566666777666778999999999987521 00 11
Q ss_pred HHHHHHHHHHHHhhcCcEEEEEccccc
Q 024152 231 MSQALRKLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 231 l~~~~r~L~~lake~~~~Vi~~sql~~ 257 (271)
..+.+..|.+.+++.|+|+++++|...
T Consensus 148 ~r~~~~~l~~~lk~~g~t~llt~e~~~ 174 (249)
T PRK04328 148 ARSIVMQLKRVLSGLGCTAIFVSQVSV 174 (249)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEECccc
Confidence 124456677778899999999999863
No 48
>KOG1434 consensus Meiotic recombination protein Dmc1 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.82 E-value=7.6e-21 Score=160.63 Aligned_cols=172 Identities=32% Similarity=0.491 Sum_probs=140.0
Q ss_pred CCCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh------cCCeEEEEcCCCCCCHH----HH
Q 024152 95 RHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR------QGGYCVFIDAEHALDPS----LA 164 (271)
Q Consensus 95 ~~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~------~~g~v~~~~~e~~~~~~----~~ 164 (271)
..+..|.||..+||.++| ||++.=+++.|.|.||+|||.+..+++..++. -+|+++|+++|.++..+ ++
T Consensus 92 ~~v~~ItTgs~~lD~ILG-GGI~~m~iTEifGefr~GKTQlshtLcVt~QlPr~~Gg~~Gk~ifIDTEgtFrpdRi~~IA 170 (335)
T KOG1434|consen 92 KTVGSITTGSSALDDILG-GGIPSMSITEIFGEFRCGKTQLSHTLCVTVQLPREMGGVGGKAIFIDTEGTFRPDRIKDIA 170 (335)
T ss_pred hccceeecchHHHhhhhc-CCccchhhHHHcCCCCcCccceeeEEEEEeecchhhCCCCceEEEEecCCccchHHHHHHH
Confidence 457789999999999999 99999999999999999999999999987763 35689999999998864 45
Q ss_pred HHcCCcC----CcceecCCCCHHHHHHHH---HHHHhc-CCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHH
Q 024152 165 ETIGVKT----ENLLLAQPDCGEQALSLV---DTLIRS-GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALR 236 (271)
Q Consensus 165 ~~~g~~~----~~~~~~~~~~~~e~~~~~---~~l~~~-~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r 236 (271)
.++++++ +++.+++..+.++.++.+ .....+ .+.++++||++..++ +.+++++ |+ ...|+|.+.+.+.
T Consensus 171 e~~~~d~d~~LdNI~y~Ra~~se~qmelv~~L~~~~se~g~~rlvIVDsIma~F-RvDy~gr-ge--LseRqqkLn~ml~ 246 (335)
T KOG1434|consen 171 ERFKVDPDFTLDNILYFRAYNSEEQMELVYLLGDFLSEHGKYRLVIVDSIMALF-RVDYDGR-GE--LSERQQKLNQMLQ 246 (335)
T ss_pred HHhCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHhhcCcEEEEEEeceehhe-eeccccc-cc--HHHHHHHHHHHHH
Confidence 5666665 456666666666655544 334444 478999999999988 6777754 32 3467888999999
Q ss_pred HHHHHHhhcCcEEEEEccccccc----------chhhhhhhccCC
Q 024152 237 KLSHSLSLSQTILIFINQVFSIN----------LNKIIDESSGHL 271 (271)
Q Consensus 237 ~L~~lake~~~~Vi~~sql~~~~----------~~~~l~~s~~~~ 271 (271)
.|.++++|++++|+++||+..++ .-|+.+++|+|+
T Consensus 247 kl~~laeefnvAVfltNQvttdpga~~~f~s~~~kp~gGh~~aHA 291 (335)
T KOG1434|consen 247 KLNKLAEEFNVAVFLTNQVTTDPGAGMTFASQDLKPAGGHSWAHA 291 (335)
T ss_pred HHHHHHHhccEEEEEecceecCCcccccccccccCccccchhhhh
Confidence 99999999999999999999765 558999999995
No 49
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=99.81 E-value=3.3e-19 Score=154.28 Aligned_cols=141 Identities=18% Similarity=0.253 Sum_probs=108.3
Q ss_pred HHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEcCCCCCCHHH----HHHcCCcCCc-------
Q 024152 106 ALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHALDPSL----AETIGVKTEN------- 173 (271)
Q Consensus 106 ~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~-~g~v~~~~~e~~~~~~~----~~~~g~~~~~------- 173 (271)
+||.+++ |+++|++++|+|+||+|||+|+++++.+.+.. +.+|+||+.|+...... +...+++...
T Consensus 2 ~LD~~~~--Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 79 (242)
T cd00984 2 DLDNLTG--GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQRLLASESGISLSKLRTGSLS 79 (242)
T ss_pred chhhhhc--CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHHHHHHHhcCCCHHHHhcCCCC
Confidence 6899997 99999999999999999999999999999887 77999999998765422 2334443221
Q ss_pred ------------------cee--cCCCCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHH
Q 024152 174 ------------------LLL--AQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQ 233 (271)
Q Consensus 174 ------------------~~~--~~~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~ 233 (271)
+.+ ....+.+++...++.+..++++++|||||++.+.... . .. ....++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~i~~~~~~~~~~~vvID~l~~l~~~~--~---~~----~~~~~~~~ 150 (242)
T cd00984 80 DEDWERLAEAIGELKELPIYIDDSSSLTVSDIRSRARRLKKEHGLGLIVIDYLQLMSGSK--K---KG----NRQQEVAE 150 (242)
T ss_pred HHHHHHHHHHHHHHhcCCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCchhcCCCC--C---CC----CHHHHHHH
Confidence 111 1234678888888888777899999999999875311 0 01 22345678
Q ss_pred HHHHHHHHHhhcCcEEEEEccccc
Q 024152 234 ALRKLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 234 ~~r~L~~lake~~~~Vi~~sql~~ 257 (271)
+++.|+.+|+++|+++++++|+..
T Consensus 151 ~~~~L~~la~~~~~~ii~~~q~~r 174 (242)
T cd00984 151 ISRSLKLLAKELNVPVIALSQLSR 174 (242)
T ss_pred HHHHHHHHHHHhCCeEEEecccCh
Confidence 888999999999999999999874
No 50
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=99.79 E-value=8.4e-19 Score=150.46 Aligned_cols=142 Identities=32% Similarity=0.447 Sum_probs=105.0
Q ss_pred cccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEcCCCCCCH--HHHHHcCCcCCc---
Q 024152 100 VSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHALDP--SLAETIGVKTEN--- 173 (271)
Q Consensus 100 i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~-~g~v~~~~~e~~~~~--~~~~~~g~~~~~--- 173 (271)
++||++.||.+++ ||+|+|.++.|.|+||+|||+|+++++.+.+.+ +.+|+|++.+.+... ..++.+|++...
T Consensus 1 V~TGI~~LD~~l~-GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~ 79 (226)
T PF06745_consen 1 VPTGIPGLDELLG-GGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYED 79 (226)
T ss_dssp E--SSTTHHHHTT-TSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHH
T ss_pred CCCCchhHHHhhc-CCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhh
Confidence 5899999999998 999999999999999999999999999998888 889999999887754 234456665432
Q ss_pred ---ceecC---------CCCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHH
Q 024152 174 ---LLLAQ---------PDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHS 241 (271)
Q Consensus 174 ---~~~~~---------~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~l 241 (271)
+.+.+ ..+.+++...+.....+.++++++||+++.+.. .. .. ..+...++.+...
T Consensus 80 ~g~l~~~d~~~~~~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~~-~~-----~~-------~~~r~~l~~l~~~ 146 (226)
T PF06745_consen 80 SGKLKIIDAFPERIGWSPNDLEELLSKIREAIEELKPDRVVIDSLSALLL-YD-----DP-------EELRRFLRALIKF 146 (226)
T ss_dssp TTSEEEEESSGGGST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHHTT-SS-----SG-------GGHHHHHHHHHHH
T ss_pred cCCEEEEecccccccccccCHHHHHHHHHHHHHhcCCCEEEEECHHHHhh-cC-----CH-------HHHHHHHHHHHHH
Confidence 22221 345677777777777667789999999998831 11 11 1233567777777
Q ss_pred HhhcCcEEEEEccc
Q 024152 242 LSLSQTILIFINQV 255 (271)
Q Consensus 242 ake~~~~Vi~~sql 255 (271)
+++.++++++++|.
T Consensus 147 l~~~~~t~llt~~~ 160 (226)
T PF06745_consen 147 LKSRGVTTLLTSEM 160 (226)
T ss_dssp HHHTTEEEEEEEEE
T ss_pred HHHCCCEEEEEEcc
Confidence 89999999999995
No 51
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=99.76 E-value=6.7e-18 Score=160.10 Aligned_cols=146 Identities=21% Similarity=0.239 Sum_probs=115.9
Q ss_pred CCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCH--HHHHHcCCcCCc-
Q 024152 97 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--SLAETIGVKTEN- 173 (271)
Q Consensus 97 ~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~--~~~~~~g~~~~~- 173 (271)
...++||+++||.+++ ||+++|.++.|.|+||+|||||+++++.+.+.++.+++|++.|++..+ ..++.+|++.++
T Consensus 242 ~~~~~tGi~~lD~~lg-GG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~ 320 (484)
T TIGR02655 242 NVRVSSGVVRLDEMCG-GGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEM 320 (484)
T ss_pred ccccCCChHhHHHHhc-CCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHH
Confidence 4579999999999999 999999999999999999999999999999998889999999998776 456778887654
Q ss_pred -----ceecC----CCCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhh
Q 024152 174 -----LLLAQ----PDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSL 244 (271)
Q Consensus 174 -----~~~~~----~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake 244 (271)
+.+.. ....++.+..+...+.+.++++++||+++.+.. . +. . ....+.+..|.+.+|+
T Consensus 321 ~~~g~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi~~~~~-~-~~----~-------~~~r~~~~~l~~~lk~ 387 (484)
T TIGR02655 321 EQQGLLKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSLSALAR-G-VS----N-------NAFRQFVIGVTGYAKQ 387 (484)
T ss_pred hhCCcEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCHHHHHH-h-cC----H-------HHHHHHHHHHHHHHhh
Confidence 33322 234577777777777778899999999998862 1 11 0 1123445567777899
Q ss_pred cCcEEEEEcccc
Q 024152 245 SQTILIFINQVF 256 (271)
Q Consensus 245 ~~~~Vi~~sql~ 256 (271)
.++|+++++...
T Consensus 388 ~~it~~~t~~~~ 399 (484)
T TIGR02655 388 EEITGFFTNTSD 399 (484)
T ss_pred CCCeEEEeeccc
Confidence 999999997654
No 52
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=99.76 E-value=1.6e-17 Score=143.25 Aligned_cols=146 Identities=21% Similarity=0.328 Sum_probs=106.4
Q ss_pred CCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHH--HHHHcCCcCCc
Q 024152 96 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPS--LAETIGVKTEN 173 (271)
Q Consensus 96 ~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~--~~~~~g~~~~~ 173 (271)
..+.++||++.||.+++ ||+++|.++.|.|+||+|||+|+.+++...+..+++|+|++.|...... .+..+|++..+
T Consensus 3 ~~~~~~tGi~~LD~~l~-gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~ 81 (234)
T PRK06067 3 KKEIISTGNEELDRKLG-GGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISD 81 (234)
T ss_pred CceEEecCCHHHHHhhC-CCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHCCCChhH
Confidence 45679999999999999 9999999999999999999999999998888888899999998776542 23456766543
Q ss_pred c------eec---------CCCCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHH
Q 024152 174 L------LLA---------QPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKL 238 (271)
Q Consensus 174 ~------~~~---------~~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L 238 (271)
. .+. .....++++..+.....+.++++++||++..+.... .. ..+.+.++.+
T Consensus 82 ~~~~g~l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~------~~-------~~~~~~l~~l 148 (234)
T PRK06067 82 FFLWGYLRIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYA------EE-------DDILNFLTEA 148 (234)
T ss_pred HHhCCCceEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcC------CH-------HHHHHHHHHH
Confidence 2 111 112335677777777766789999999999764200 00 1233444444
Q ss_pred HHHHhhcCcEEEEEcccc
Q 024152 239 SHSLSLSQTILIFINQVF 256 (271)
Q Consensus 239 ~~lake~~~~Vi~~sql~ 256 (271)
+.+ ++.++++++++|..
T Consensus 149 ~~l-~~~g~tvllt~~~~ 165 (234)
T PRK06067 149 KNL-VDLGKTILITLHPY 165 (234)
T ss_pred HHH-HhCCCEEEEEecCC
Confidence 433 34688999998864
No 53
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=99.75 E-value=1.1e-17 Score=159.77 Aligned_cols=149 Identities=22% Similarity=0.296 Sum_probs=111.6
Q ss_pred CCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEcCCCCCCH--HHHHHcCCcCC
Q 024152 96 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHALDP--SLAETIGVKTE 172 (271)
Q Consensus 96 ~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~-~g~v~~~~~e~~~~~--~~~~~~g~~~~ 172 (271)
.++++|||+++||.+++ ||+++|++++|.|+||+|||+|+++++.+.+.. +.+|+|++.|+...+ ..+..+|++..
T Consensus 9 ~~~ri~TGI~~LD~~l~-GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d~~ 87 (509)
T PRK09302 9 GIEKLPTGIEGFDDITH-GGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIRNVASFGWDLQ 87 (509)
T ss_pred CCccccCCchhHHHhhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHcCCCHH
Confidence 67899999999999998 899999999999999999999999999988877 778999999988765 33455777654
Q ss_pred cce------ecC------------CCCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHH
Q 024152 173 NLL------LAQ------------PDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQA 234 (271)
Q Consensus 173 ~~~------~~~------------~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~ 234 (271)
.+. +.. ..+.++++..+.....+.+++.++||+++.+... + .. ...+...
T Consensus 88 ~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~~--~------d~----~~~~r~~ 155 (509)
T PRK09302 88 KLIDEGKLFILDASPDPSEQEEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEALFSG--F------SN----EAVVRRE 155 (509)
T ss_pred HHhhCCeEEEEecCcccccccccccccHHHHHHHHHHHHHhhCCCEEEECCHHHHHhh--c------cC----HHHHHHH
Confidence 321 111 1234566666777777778999999999976521 0 00 0122344
Q ss_pred HHHHHHHHhhcCcEEEEEccccc
Q 024152 235 LRKLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 235 ~r~L~~lake~~~~Vi~~sql~~ 257 (271)
+..|.+.+++.++|+++++|...
T Consensus 156 l~~L~~~Lk~~g~TvLlt~~~~~ 178 (509)
T PRK09302 156 LRRLFAWLKQKGVTAVITGERGD 178 (509)
T ss_pred HHHHHHHHHhCCCEEEEEECCcc
Confidence 55566667889999999998653
No 54
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=99.74 E-value=4.2e-17 Score=139.77 Aligned_cols=142 Identities=25% Similarity=0.371 Sum_probs=100.5
Q ss_pred CcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCH--HHHHHcCCcCCc-----ce
Q 024152 103 GSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--SLAETIGVKTEN-----LL 175 (271)
Q Consensus 103 g~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~--~~~~~~g~~~~~-----~~ 175 (271)
|++.||.+++ ||+++|++++|.|+||+|||+|+.+++.+....+++|+|++.|++..+ ..+..++++.+. +.
T Consensus 1 Gi~~LD~~l~-gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~~~~~~~~~~~~~~~~~l~ 79 (224)
T TIGR03880 1 GIPGLDEMLG-GGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGYAKSKGWDLEDYIDKSLY 79 (224)
T ss_pred CchhhHHHhc-CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHcCCChHHHHhCCeE
Confidence 6889999998 899999999999999999999999999998888889999999987765 334556765543 22
Q ss_pred ecCCC------CHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEE
Q 024152 176 LAQPD------CGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTIL 249 (271)
Q Consensus 176 ~~~~~------~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~V 249 (271)
+.+.. ...++...++.++.+.++++++||+++.+.+ .... . ....+.+...++. +++.|+|+
T Consensus 80 ~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~vVIDsls~l~~--~~~~---~---~~~r~~l~~l~~~----lk~~~~tv 147 (224)
T TIGR03880 80 IVRLDPSDFKTSLNRIKNELPILIKELGASRVVIDPISLLET--LFDD---D---AERRTELFRFYSS----LRETGVTT 147 (224)
T ss_pred EEecCHHHHHhhHHHHHHHHHHHHHHhCCCEEEEcChHHHhh--hcCC---H---HHHHHHHHHHHHH----HHhCCCEE
Confidence 22211 1234445556666677899999999998732 1111 0 1122233333333 46789999
Q ss_pred EEEccccc
Q 024152 250 IFINQVFS 257 (271)
Q Consensus 250 i~~sql~~ 257 (271)
++++|...
T Consensus 148 ll~s~~~~ 155 (224)
T TIGR03880 148 ILTSEADK 155 (224)
T ss_pred EEEEcccC
Confidence 99999753
No 55
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=99.72 E-value=4.5e-17 Score=154.47 Aligned_cols=146 Identities=18% Similarity=0.236 Sum_probs=104.7
Q ss_pred ccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEcCCCCCCH--HHHHHcCCcCCcc-
Q 024152 99 VVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHALDP--SLAETIGVKTENL- 174 (271)
Q Consensus 99 ~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~-~g~v~~~~~e~~~~~--~~~~~~g~~~~~~- 174 (271)
.++||++.||.+++ |||++|.++.|.|+||+|||||+++++.+.+.+ +.+++|++.|+.... ..++.+|++++.+
T Consensus 2 r~~TGI~gLD~il~-GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~~~l~~~~~~~G~~~~~~~ 80 (484)
T TIGR02655 2 KIRTMIEGFDDISH-GGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESPQDIIKNARSFGWDLQKLV 80 (484)
T ss_pred cCCCCchhHHHhcC-CCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCHHHHHHHHHHcCCCHHHHh
Confidence 47999999999999 999999999999999999999999999887766 678999999877654 4466788877643
Q ss_pred -----eecC------------CCCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHH
Q 024152 175 -----LLAQ------------PDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRK 237 (271)
Q Consensus 175 -----~~~~------------~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~ 237 (271)
.+.+ ....++++......+.....+.++||++..+....+ . ... ..+.+..
T Consensus 81 ~~g~l~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~------~--~~~----~r~~l~~ 148 (484)
T TIGR02655 81 DEGKLFILDASPDPEGQDVVGGFDLSALIERINYAIRKYKAKRVSIDSVTAVFQQYD------A--VSV----VRREIFR 148 (484)
T ss_pred hcCceEEEecCchhccccccccCCHHHHHHHHHHHHHHhCCcEEEEeehhHhhhhcC------c--hHH----HHHHHHH
Confidence 2211 123445555555566678899999999887642111 0 001 1122233
Q ss_pred HHHHHhhcCcEEEEEccccc
Q 024152 238 LSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 238 L~~lake~~~~Vi~~sql~~ 257 (271)
+.+.+++.++|+++++|...
T Consensus 149 Li~~L~~~g~TvLLtsh~~~ 168 (484)
T TIGR02655 149 LVARLKQIGVTTVMTTERIE 168 (484)
T ss_pred HHHHHHHCCCEEEEEecCcc
Confidence 33344678999999999754
No 56
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=99.72 E-value=7e-17 Score=154.27 Aligned_cols=148 Identities=24% Similarity=0.328 Sum_probs=114.9
Q ss_pred CCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCH--HHHHHcCCcCCc
Q 024152 96 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--SLAETIGVKTEN 173 (271)
Q Consensus 96 ~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~--~~~~~~g~~~~~ 173 (271)
....++||+++||.+++ ||+++|.+++|.|+||+|||+|+.+++...+..+.+++|++.|+.... ..+..+|++.+.
T Consensus 251 ~~~~~~tGi~~lD~~l~-GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~ 329 (509)
T PRK09302 251 SNERISSGVPDLDEMLG-GGFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDLEK 329 (509)
T ss_pred ccccccCCcHHHHHhhc-CCCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcCCChHH
Confidence 34579999999999998 999999999999999999999999999999888889999999887654 335567776543
Q ss_pred c------eec----CCCCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHh
Q 024152 174 L------LLA----QPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLS 243 (271)
Q Consensus 174 ~------~~~----~~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lak 243 (271)
+ .+. .....++.+..+.....+.+++++|||+++.+.... . ...+.+.++.|..+++
T Consensus 330 ~~~~g~l~i~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDslt~l~~~~-------~------~~~~~~~l~~l~~~~k 396 (509)
T PRK09302 330 MEEKGLLKIICARPESYGLEDHLIIIKREIEEFKPSRVAIDPLSALARGG-------S------LNEFRQFVIRLTDYLK 396 (509)
T ss_pred HhhcCCceeecCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHHhC-------C------HHHHHHHHHHHHHHHH
Confidence 2 111 122346667777777777889999999999875211 1 1234566777888899
Q ss_pred hcCcEEEEEccccc
Q 024152 244 LSQTILIFINQVFS 257 (271)
Q Consensus 244 e~~~~Vi~~sql~~ 257 (271)
+.|+++++++|...
T Consensus 397 ~~~~t~l~t~~~~~ 410 (509)
T PRK09302 397 SEEITGLFTNLTPD 410 (509)
T ss_pred hCCCeEEEEecccc
Confidence 99999999998654
No 57
>KOG1564 consensus DNA repair protein RHP57 [Replication, recombination and repair]
Probab=99.71 E-value=4.4e-17 Score=139.77 Aligned_cols=157 Identities=28% Similarity=0.381 Sum_probs=114.7
Q ss_pred CccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh------cCCeEEEEcCCCCCCHHH-HHHcCCc
Q 024152 98 PVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR------QGGYCVFIDAEHALDPSL-AETIGVK 170 (271)
Q Consensus 98 ~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~------~~g~v~~~~~e~~~~~~~-~~~~g~~ 170 (271)
..++||...||..++ ||++.+.+++|+|++|+|||.|+++++..++- -++.++|+.+|..+...+ .+-..+.
T Consensus 82 ~~lttgc~~LD~~L~-GGi~~~giTEi~GeSg~GKtQL~lQL~L~VQLp~~~GGL~~~~vYI~TE~~fP~rRL~qL~~~~ 160 (351)
T KOG1564|consen 82 SKLTTGCVALDECLR-GGIPTDGITEICGESGCGKTQLLLQLSLCVQLPRSHGGLGGGAVYICTESPFPTRRLHQLSHTL 160 (351)
T ss_pred hhcccccHHHHHHhc-CCcccccHHHHhhccCCcHHHHHHHHHHHhhCchhhCCCCCceEEEEcCCCCcHHHHHHHHHhc
Confidence 459999999999999 99999999999999999999999999987762 245789999998876422 1111111
Q ss_pred C----------------CcceecCCCCHHHHHHHHHH----HHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHH
Q 024152 171 T----------------ENLLLAQPDCGEQALSLVDT----LIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARL 230 (271)
Q Consensus 171 ~----------------~~~~~~~~~~~~e~~~~~~~----l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~ 230 (271)
+ +.+++....+++.+.+.+.. +..++++++||||++...+ +.++.-.+.+.+ .+++.
T Consensus 161 ~~rp~~~~~~~~~~Npgd~IFv~~~~d~d~l~~iv~~qlPiL~~r~~i~LVIiDSVAa~f-R~E~d~~~Sdl~--~r~~~ 237 (351)
T KOG1564|consen 161 PQRPNPEKELNYNDNPGDHIFVENVHDVDHLLHIVNRQLPILLNRKKIKLVIIDSVAALF-RSEFDYNPSDLK--KRARH 237 (351)
T ss_pred ccCCCcchhhhhccCCCceEEEEeccchhhHHHHHhhhccceeccCcceEEEEehhhHHH-HHHhccChhhhh--hHHHH
Confidence 1 12445555666666666544 3456779999999999888 555543222221 34455
Q ss_pred HHHHHHHHHHHHhhcCcEEEEEcccccc
Q 024152 231 MSQALRKLSHSLSLSQTILIFINQVFSI 258 (271)
Q Consensus 231 l~~~~r~L~~lake~~~~Vi~~sql~~~ 258 (271)
+-+....|..+|.+++++|+++||+.+.
T Consensus 238 l~rla~~Lr~LA~~~~~aVV~~NQVtd~ 265 (351)
T KOG1564|consen 238 LFRLAGKLRQLASKFDLAVVCANQVTDR 265 (351)
T ss_pred HHHHHHHHHHHHHhcCccEEEeeccccc
Confidence 5566666666699999999999999987
No 58
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.69 E-value=1.6e-17 Score=149.50 Aligned_cols=146 Identities=21% Similarity=0.265 Sum_probs=111.7
Q ss_pred HHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC-CCHHHHHHcCCcCCcceecCCCCHH
Q 024152 105 FALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA-LDPSLAETIGVKTENLLLAQPDCGE 183 (271)
Q Consensus 105 ~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~-~~~~~~~~~g~~~~~~~~~~~~~~~ 183 (271)
..+|.+-- -+++|+++.|.||+||||||++++||+...+++|.| +++++.. .-+-..+.+|+++|++.+++++++.
T Consensus 19 ~av~~isl--~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I-~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~ 95 (352)
T COG3842 19 TAVDDISL--DIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEI-LLDGEDITDVPPEKRPIGMVFQSYALFPHMTVE 95 (352)
T ss_pred eEEeccee--eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEECCCCChhhcccceeecCcccCCCCcHH
Confidence 34444433 677999999999999999999999999999999984 5554433 3345677899999999999999999
Q ss_pred HHHHHHHHHHhc-----------CCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH--------------------
Q 024152 184 QALSLVDTLIRS-----------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS-------------------- 232 (271)
Q Consensus 184 e~~~~~~~l~~~-----------~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~-------------------- 232 (271)
+++++-.++... .-++++-++.+...+| .++++ |++||+..+|+++
T Consensus 96 ~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-~qLSG--GQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR 172 (352)
T COG3842 96 ENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKP-HQLSG--GQQQRVALARALVPEPKVLLLDEPLSALDAKLR 172 (352)
T ss_pred HHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhCh-hhhCh--HHHHHHHHHHHhhcCcchhhhcCcccchhHHHH
Confidence 998876552211 1234565666555553 55665 8999999999984
Q ss_pred -HHHHHHHHHHhhcCcEEEEEcccc
Q 024152 233 -QALRKLSHSLSLSQTILIFINQVF 256 (271)
Q Consensus 233 -~~~r~L~~lake~~~~Vi~~sql~ 256 (271)
+.-+.|+++.++.|+|.|+++|-.
T Consensus 173 ~~mr~Elk~lq~~~giT~i~VTHDq 197 (352)
T COG3842 173 EQMRKELKELQRELGITFVYVTHDQ 197 (352)
T ss_pred HHHHHHHHHHHHhcCCeEEEEECCH
Confidence 334478889999999999999976
No 59
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=99.66 E-value=1.2e-15 Score=133.59 Aligned_cols=147 Identities=28% Similarity=0.393 Sum_probs=109.1
Q ss_pred CCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCH--HHHHHcCCcCCcc
Q 024152 97 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--SLAETIGVKTENL 174 (271)
Q Consensus 97 ~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~--~~~~~~g~~~~~~ 174 (271)
+.++|||++.||.+++ ||+|+|.+++|.|+||+|||+|+.+++.+.+..+.+|+|++.++.... ..+..+|++++..
T Consensus 2 ~~~~~TGI~glD~~l~-GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~~~~~~g~d~~~~ 80 (260)
T COG0467 2 MERIPTGIPGLDEILG-GGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLENARSFGWDLEVY 80 (260)
T ss_pred CccccCCCcchHHHhc-CCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHHHHHHHHcCCCHHHH
Confidence 3578999999999999 999999999999999999999999999999999889999998877654 3344577776421
Q ss_pred ------e---------------ecCCCCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHH
Q 024152 175 ------L---------------LAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQ 233 (271)
Q Consensus 175 ------~---------------~~~~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~ 233 (271)
. .....+.+.+...++......+...+++|++..+.-.. ... . . ...
T Consensus 81 ~~~g~l~i~d~~~~~~~~~~~~~~~~~~~~~l~~~I~~~~~~~~~~~~ViDsi~~~~~~~------~~~---~--~-~r~ 148 (260)
T COG0467 81 IEKGKLAILDAFLSEKGLVSIVVGDPLDLEELLDRIREIVEKEGADRVVIDSITELTLYL------NDP---A--L-VRR 148 (260)
T ss_pred hhcCCEEEEEccccccccccccccCCccHHHHHHHHHHHHHHhCCCEEEEeCCchHhhhc------Cch---H--H-HHH
Confidence 0 11123445566667777766779999999998543110 000 1 1 135
Q ss_pred HHHHHHHHHhhcCcEEEEEcccc
Q 024152 234 ALRKLSHSLSLSQTILIFINQVF 256 (271)
Q Consensus 234 ~~r~L~~lake~~~~Vi~~sql~ 256 (271)
....++++.++.+++.+++++..
T Consensus 149 ~~~~l~~~~~~~~~t~~~~~~~~ 171 (260)
T COG0467 149 ILLLLKRFLKKLGVTSLLTTEAP 171 (260)
T ss_pred HHHHHHHHHHhCCCEEEEEeccc
Confidence 56666777788889999998754
No 60
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.65 E-value=1.4e-16 Score=135.43 Aligned_cols=146 Identities=23% Similarity=0.284 Sum_probs=111.0
Q ss_pred HHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC---HHHHHHcCCcCCcceecCCCCH
Q 024152 106 ALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCG 182 (271)
Q Consensus 106 ~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~---~~~~~~~g~~~~~~~~~~~~~~ 182 (271)
.+|.+.- -+++|+++++.||+||||||++++|.+.+.+++|. ++++.+...+ ..+++.+||..|.+.+++++++
T Consensus 16 av~~v~l--~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~-I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv 92 (309)
T COG1125 16 AVDDVNL--TIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGE-ILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTV 92 (309)
T ss_pred eeeeeeE--EecCCeEEEEECCCCCcHHHHHHHHhcccCCCCce-EEECCeecccCCHHHHHHhhhhhhhhcccCCCccH
Confidence 4444443 68899999999999999999999999999999998 5555554433 3788999999999999999999
Q ss_pred HHHHHHHHHHHh----------cCCccEEEEcc--hhhhcCCCccCCccchhhHHHHHHHHHH-----------------
Q 024152 183 EQALSLVDTLIR----------SGSVDVVVVDS--VAALVPKGELDGEMGDAHMAMQARLMSQ----------------- 233 (271)
Q Consensus 183 ~e~~~~~~~l~~----------~~~~~lvvID~--l~~~~~~~~l~~~~g~~~~~~~~~~l~~----------------- 233 (271)
.|+++.+-.+.. ..-++++-+|. +...+| .++++ |++||+-.+|+++.
T Consensus 93 ~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP-~eLSG--GQQQRVGv~RALAadP~ilLMDEPFgALDpI 169 (309)
T COG1125 93 AENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYP-HELSG--GQQQRVGVARALAADPPILLMDEPFGALDPI 169 (309)
T ss_pred HHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCc-hhcCc--chhhHHHHHHHHhcCCCeEeecCCccccChh
Confidence 999887665431 01134555553 233343 55665 99999999999843
Q ss_pred ----HHHHHHHHHhhcCcEEEEEccccc
Q 024152 234 ----ALRKLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 234 ----~~r~L~~lake~~~~Vi~~sql~~ 257 (271)
.-..++++-++.+.|||+++|-.+
T Consensus 170 ~R~~lQ~e~~~lq~~l~kTivfVTHDid 197 (309)
T COG1125 170 TRKQLQEEIKELQKELGKTIVFVTHDID 197 (309)
T ss_pred hHHHHHHHHHHHHHHhCCEEEEEecCHH
Confidence 223677788999999999999764
No 61
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.65 E-value=3.4e-16 Score=132.82 Aligned_cols=148 Identities=19% Similarity=0.155 Sum_probs=104.1
Q ss_pred cHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC--C----CHHHHHHcCCcCCcceec
Q 024152 104 SFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA--L----DPSLAETIGVKTENLLLA 177 (271)
Q Consensus 104 ~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~--~----~~~~~~~~g~~~~~~~~~ 177 (271)
+..|+.+.- -+++|++++|.||+|||||||++.+.+...|++|.|.+.+.... . ...+.+.+|+.+|++.+.
T Consensus 18 ~~~L~~v~l--~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl 95 (226)
T COG1136 18 VEALKDVNL--EIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLL 95 (226)
T ss_pred eEecccceE--EEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCC
Confidence 334444443 68899999999999999999999999999998887665542211 1 125577899999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCC----------ccEEEEcchhh-hcCCCccCCccchhhHHHHHHHHH--------------
Q 024152 178 QPDCGEQALSLVDTLIRSGS----------VDVVVVDSVAA-LVPKGELDGEMGDAHMAMQARLMS-------------- 232 (271)
Q Consensus 178 ~~~~~~e~~~~~~~l~~~~~----------~~lvvID~l~~-~~~~~~l~~~~g~~~~~~~~~~l~-------------- 232 (271)
+..++.|++.+...+..... ...+-+..... .+ ..++++ |++||+..+|++.
T Consensus 96 ~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~-p~eLSG--GqqQRVAIARAL~~~P~iilADEPTgn 172 (226)
T COG1136 96 PDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKK-PSELSG--GQQQRVAIARALINNPKIILADEPTGN 172 (226)
T ss_pred CCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCC-chhcCH--HHHHHHHHHHHHhcCCCeEEeeCcccc
Confidence 99999999886433211100 11112222222 22 245555 9999999999983
Q ss_pred -------HHHHHHHHHHhhcCcEEEEEcccc
Q 024152 233 -------QALRKLSHSLSLSQTILIFINQVF 256 (271)
Q Consensus 233 -------~~~r~L~~lake~~~~Vi~~sql~ 256 (271)
+.+..|..++++.|+|||+++|-.
T Consensus 173 LD~~t~~~V~~ll~~~~~~~g~tii~VTHd~ 203 (226)
T COG1136 173 LDSKTAKEVLELLRELNKERGKTIIMVTHDP 203 (226)
T ss_pred CChHHHHHHHHHHHHHHHhcCCEEEEEcCCH
Confidence 355567777888999999999955
No 62
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.63 E-value=1.5e-15 Score=124.10 Aligned_cols=150 Identities=23% Similarity=0.294 Sum_probs=109.1
Q ss_pred cCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC-----CHHHHHHcCCcCCccee
Q 024152 102 TGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-----DPSLAETIGVKTENLLL 176 (271)
Q Consensus 102 Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~-----~~~~~~~~g~~~~~~~~ 176 (271)
.|-+.|+.+.- -+++|+++-|.||+|+|||||++.|.+...++.|.+.+++..-.. -+.+++++|+++|++++
T Consensus 13 ~g~~aL~~vs~--~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rL 90 (223)
T COG2884 13 GGREALRDVSF--HIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRL 90 (223)
T ss_pred CCchhhhCceE--eecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeeccc
Confidence 35567777765 889999999999999999999999999999999997776543221 23788999999999999
Q ss_pred cCCCCHHHHHHHHHHHHhcC----------CccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH--------------
Q 024152 177 AQPDCGEQALSLVDTLIRSG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS-------------- 232 (271)
Q Consensus 177 ~~~~~~~e~~~~~~~l~~~~----------~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~-------------- 232 (271)
....++.|+++++.+..... -+++|-+-.-...+| .++++ |++||+..+|++.
T Consensus 91 L~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP-~~LSG--GEQQRvaIARAiV~~P~vLlADEPTGN 167 (223)
T COG2884 91 LPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALP-SQLSG--GEQQRVAIARAIVNQPAVLLADEPTGN 167 (223)
T ss_pred cccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCc-cccCc--hHHHHHHHHHHHccCCCeEeecCCCCC
Confidence 99999999988765432110 123333322222332 45555 9999999999983
Q ss_pred -------HHHHHHHHHHhhcCcEEEEEccccc
Q 024152 233 -------QALRKLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 233 -------~~~r~L~~lake~~~~Vi~~sql~~ 257 (271)
++++.+ .-....|+||++.+|-..
T Consensus 168 LDp~~s~~im~lf-eeinr~GtTVl~ATHd~~ 198 (223)
T COG2884 168 LDPDLSWEIMRLF-EEINRLGTTVLMATHDLE 198 (223)
T ss_pred CChHHHHHHHHHH-HHHhhcCcEEEEEeccHH
Confidence 233333 234568999999999663
No 63
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.63 E-value=3.6e-16 Score=130.20 Aligned_cols=137 Identities=22% Similarity=0.308 Sum_probs=98.9
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC----HHHHHHcCCcCCcceecCCCCHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD----PSLAETIGVKTENLLLAQPDCGEQALSLVD 190 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~----~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~ 190 (271)
-+.+|+++.|+||+|||||||++++.+.-.+++|. ++++++.... ..+++.+|+++|++.++++.++-+++..+.
T Consensus 24 ~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~-I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap 102 (240)
T COG1126 24 SVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGS-ITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAP 102 (240)
T ss_pred eEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCce-EEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhh
Confidence 67799999999999999999999999999999998 5666543322 357888999999999999999988765532
Q ss_pred HHHhc-----------CCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHH
Q 024152 191 TLIRS-----------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKL 238 (271)
Q Consensus 191 ~l~~~-----------~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L 238 (271)
..... .-+..|-+-.-...|| ..+++ |++||+..+|+++ +.+.-+
T Consensus 103 ~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-~qLSG--GQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm 179 (240)
T COG1126 103 VKVKKLSKAEAREKALELLEKVGLADKADAYP-AQLSG--GQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVM 179 (240)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCchhhhhhCc-cccCc--HHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHH
Confidence 21110 0122222222233443 45555 8999999999983 455555
Q ss_pred HHHHhhcCcEEEEEcccc
Q 024152 239 SHSLSLSQTILIFINQVF 256 (271)
Q Consensus 239 ~~lake~~~~Vi~~sql~ 256 (271)
+.+| +.|.|.++++|-.
T Consensus 180 ~~LA-~eGmTMivVTHEM 196 (240)
T COG1126 180 KDLA-EEGMTMIIVTHEM 196 (240)
T ss_pred HHHH-HcCCeEEEEechh
Confidence 5555 5679999999976
No 64
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=99.62 E-value=4.5e-16 Score=129.97 Aligned_cols=151 Identities=23% Similarity=0.334 Sum_probs=84.2
Q ss_pred CCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh----------cCCeEEEEcCCCCCCHHH--
Q 024152 96 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR----------QGGYCVFIDAEHALDPSL-- 163 (271)
Q Consensus 96 ~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~----------~~g~v~~~~~e~~~~~~~-- 163 (271)
....++++++.+|.+++ |++++|+++.|+|+||+|||||+.+++..++. .+++|+|++.|.......
T Consensus 10 ~~~~~~~~~~~~~~li~-g~~~~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~r 88 (193)
T PF13481_consen 10 SFEDLDTGFPPLDWLID-GLLPRGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARR 88 (193)
T ss_dssp ---HHHS------EEET-TEE-TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHH
T ss_pred hhhhccCCCCCcceeEC-CcccCCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHH
Confidence 45678899999999999 88899999999999999999999999998875 456899999998854311
Q ss_pred HHHc--CCcC-C-----------cceecCCC----CHHHHHHHHHHHHhc-CCccEEEEcchhhhcCCCccCCccchhhH
Q 024152 164 AETI--GVKT-E-----------NLLLAQPD----CGEQALSLVDTLIRS-GSVDVVVVDSVAALVPKGELDGEMGDAHM 224 (271)
Q Consensus 164 ~~~~--g~~~-~-----------~~~~~~~~----~~~e~~~~~~~l~~~-~~~~lvvID~l~~~~~~~~l~~~~g~~~~ 224 (271)
...+ .+.. + .+.+.... .....+..+.+.... +++++||||+++.+.+.. .
T Consensus 89 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~~-------~--- 158 (193)
T PF13481_consen 89 LRALLQDYDDDANLFFVDLSNWGCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDGD-------E--- 158 (193)
T ss_dssp HHHHHTTS-HHHHHHHHHH--E-EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S--------T---
T ss_pred HHHHhcccCCccceEEeeccccccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcCC-------C---
Confidence 1111 1110 0 11111111 123344444455545 679999999999987521 1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCcEEEEEcccccc
Q 024152 225 AMQARLMSQALRKLSHSLSLSQTILIFINQVFSI 258 (271)
Q Consensus 225 ~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~~ 258 (271)
+...+..+..+.|+++++++|++|+++.|.++.
T Consensus 159 -~~~~~~~~~~~~l~~la~~~~~~vi~v~H~~K~ 191 (193)
T PF13481_consen 159 -NSNSAVAQLMQELKRLAKEYGVAVILVHHTNKS 191 (193)
T ss_dssp -T-HHHHHHHHHHHHHHHHHH--EEEEEEEE---
T ss_pred -CCHHHHHHHHHHHHHHHHHcCCEEEEEECCCCC
Confidence 111223567777888899999999999998764
No 65
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.60 E-value=1.2e-15 Score=132.87 Aligned_cols=147 Identities=17% Similarity=0.207 Sum_probs=110.6
Q ss_pred cHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCC---CCCC-HHHHHHcCCcCCcceecCC
Q 024152 104 SFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE---HALD-PSLAETIGVKTENLLLAQP 179 (271)
Q Consensus 104 ~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e---~~~~-~~~~~~~g~~~~~~~~~~~ 179 (271)
+..+|.+.- -++.|+++++.|||||||||+++.||+...++.|.| +++.+ +... ....+++|+.+|++-++++
T Consensus 15 ~~a~~di~l--~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I-~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~H 91 (345)
T COG1118 15 FGALDDISL--DIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRI-RLNGRVLFDVSNLAVRDRKVGFVFQHYALFPH 91 (345)
T ss_pred cccccccee--eecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceE-EECCEeccchhccchhhcceeEEEechhhccc
Confidence 444554433 688999999999999999999999999999999984 45555 2222 3567889999999999999
Q ss_pred CCHHHHHHHHHHHHh------------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------
Q 024152 180 DCGEQALSLVDTLIR------------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS--------------- 232 (271)
Q Consensus 180 ~~~~e~~~~~~~l~~------------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~--------------- 232 (271)
+++.+++++..+..+ ..-++++-++.+...+| .++++ |++||+..+|+++
T Consensus 92 mtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP-~QLSG--GQrQRVALARALA~eP~vLLLDEPf~AL 168 (345)
T COG1118 92 MTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP-AQLSG--GQRQRVALARALAVEPKVLLLDEPFGAL 168 (345)
T ss_pred chHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCc-hhcCh--HHHHHHHHHHHhhcCCCeEeecCCchhh
Confidence 999999988553221 11155666777777775 55665 8999999999983
Q ss_pred ------HHHHHHHHHHhhcCcEEEEEcccc
Q 024152 233 ------QALRKLSHSLSLSQTILIFINQVF 256 (271)
Q Consensus 233 ------~~~r~L~~lake~~~~Vi~~sql~ 256 (271)
+.=+.|.++.++.++++++++|-.
T Consensus 169 Da~vr~~lr~wLr~~~~~~~~ttvfVTHD~ 198 (345)
T COG1118 169 DAKVRKELRRWLRKLHDRLGVTTVFVTHDQ 198 (345)
T ss_pred hHHHHHHHHHHHHHHHHhhCceEEEEeCCH
Confidence 222245556777899999999976
No 66
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.59 E-value=2e-15 Score=135.24 Aligned_cols=139 Identities=18% Similarity=0.237 Sum_probs=108.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC-HHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 193 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~-~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~ 193 (271)
-+..|++++|.||||||||||++.||+...+++|. ++|+++.... +-..+.+++++|++.+++++++.+++++..+..
T Consensus 25 ~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~-I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~ 103 (338)
T COG3839 25 DIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGE-ILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLR 103 (338)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce-EEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhC
Confidence 46699999999999999999999999999999998 5565543332 455678999999999999999999998865542
Q ss_pred h----------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHH---------------------HHHHHHHHH
Q 024152 194 R----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQ---------------------ALRKLSHSL 242 (271)
Q Consensus 194 ~----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~---------------------~~r~L~~la 242 (271)
. +.-.+++-|+.+....| .++++ |++||+..+|++.. .-..++++-
T Consensus 104 ~~~k~ei~~rV~eva~~L~l~~lL~r~P-~~LSG--GQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh 180 (338)
T COG3839 104 GVPKAEIDKRVKEVAKLLGLEHLLNRKP-LQLSG--GQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLH 180 (338)
T ss_pred CCchHHHHHHHHHHHHHcCChhHHhcCc-ccCCh--hhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHH
Confidence 1 01234566776666653 55665 89999999999842 222677778
Q ss_pred hhcCcEEEEEccccc
Q 024152 243 SLSQTILIFINQVFS 257 (271)
Q Consensus 243 ke~~~~Vi~~sql~~ 257 (271)
+++++|+|.++|-..
T Consensus 181 ~~l~~T~IYVTHDq~ 195 (338)
T COG3839 181 ERLGTTTIYVTHDQV 195 (338)
T ss_pred HhcCCcEEEEcCCHH
Confidence 899999999999763
No 67
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.57 E-value=5.7e-15 Score=128.96 Aligned_cols=150 Identities=19% Similarity=0.200 Sum_probs=112.7
Q ss_pred CcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC---C--CHHHHHHcCCcCCcceec
Q 024152 103 GSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA---L--DPSLAETIGVKTENLLLA 177 (271)
Q Consensus 103 g~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~---~--~~~~~~~~g~~~~~~~~~ 177 (271)
.+..||.+.- -+++|++++|+|++|+|||||.+++...-.|++|+|++.+.+-. . -+..++.+|+.||++.+.
T Consensus 18 ~~~al~~vsL--~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLL 95 (339)
T COG1135 18 TVTALDDVSL--EIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLL 95 (339)
T ss_pred ceeeeccceE--EEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEecccccc
Confidence 4566676655 78899999999999999999999999999999999665552211 1 135678899999999999
Q ss_pred CCCCHHHHHHHHHHHHhc----------CCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------
Q 024152 178 QPDCGEQALSLVDTLIRS----------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS--------------- 232 (271)
Q Consensus 178 ~~~~~~e~~~~~~~l~~~----------~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~--------------- 232 (271)
...|+.+++++..++... .-+++|-+..-...+| .++++ |++||+..+|+++
T Consensus 96 ssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP-~qLSG--GQKQRVaIARALa~~P~iLL~DEaTSAL 172 (339)
T COG1135 96 SSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYP-AQLSG--GQKQRVAIARALANNPKILLCDEATSAL 172 (339)
T ss_pred ccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCc-hhcCc--chhhHHHHHHHHhcCCCEEEecCccccC
Confidence 989999998876543211 1133443433333342 44554 9999999999983
Q ss_pred ------HHHHHHHHHHhhcCcEEEEEccccc
Q 024152 233 ------QALRKLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 233 ------~~~r~L~~lake~~~~Vi~~sql~~ 257 (271)
.++..|+.+-+++|.||++++|-++
T Consensus 173 DP~TT~sIL~LL~~In~~lglTIvlITHEm~ 203 (339)
T COG1135 173 DPETTQSILELLKDINRELGLTIVLITHEME 203 (339)
T ss_pred ChHHHHHHHHHHHHHHHHcCCEEEEEechHH
Confidence 5677888889999999999999774
No 68
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.57 E-value=2.7e-14 Score=122.98 Aligned_cols=145 Identities=17% Similarity=0.277 Sum_probs=94.4
Q ss_pred CccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHH--HHHHcCCcCCcc-
Q 024152 98 PVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPS--LAETIGVKTENL- 174 (271)
Q Consensus 98 ~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~--~~~~~g~~~~~~- 174 (271)
-.+.+++++||.+++ ||+++|++++|.|+||+|||||+.+++....+.+.+++|++.+...... .++.+|++.+..
T Consensus 4 ~~~~~~~~~ld~~l~-ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~ 82 (230)
T PRK08533 4 AKIELSRDELHKRLG-GGIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKL 82 (230)
T ss_pred EEEEEEEeeeehhhC-CCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHh
Confidence 457789999999999 9999999999999999999999999988887777789999988766542 234567765432
Q ss_pred -----eec---CC-CCH---HHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHH
Q 024152 175 -----LLA---QP-DCG---EQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSL 242 (271)
Q Consensus 175 -----~~~---~~-~~~---~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~la 242 (271)
... +. ... +..+..+.......+++++++|+++.... .. .+. ...+.+.+.++.+
T Consensus 83 ~~~~l~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~-~~-----~d~---~~~~~l~~~l~~l---- 149 (230)
T PRK08533 83 ISGKLLYIPVYPLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLIS-ND-----ASE---VAVNDLMAFFKRI---- 149 (230)
T ss_pred hcCcEEEEEecccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhc-CC-----cch---HHHHHHHHHHHHH----
Confidence 111 11 112 22222222233345789999999987652 10 010 1113333333333
Q ss_pred hhcCcEEEEEcccc
Q 024152 243 SLSQTILIFINQVF 256 (271)
Q Consensus 243 ke~~~~Vi~~sql~ 256 (271)
++.+++++++++..
T Consensus 150 ~~~g~tvi~t~~~~ 163 (230)
T PRK08533 150 SSLNKVIILTANPK 163 (230)
T ss_pred HhCCCEEEEEeccc
Confidence 34577887776644
No 69
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.54 E-value=4e-15 Score=126.83 Aligned_cols=137 Identities=18% Similarity=0.188 Sum_probs=100.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH-
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI- 193 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~- 193 (271)
-+++||++.|.||+|||||||++.+++...+..|.|.+.+.+ .. ......++.+|+..+++..|+.+++.+.....
T Consensus 25 ~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~-v~--~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~ 101 (248)
T COG1116 25 SVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRP-VT--GPGPDIGYVFQEDALLPWLTVLDNVALGLELRG 101 (248)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcc-cC--CCCCCEEEEeccCcccchhhHHhhheehhhccc
Confidence 566999999999999999999999999999999986654433 22 12345789999999998889888876543321
Q ss_pred ---------hcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHH---------------------HHHHHHHHHh
Q 024152 194 ---------RSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQ---------------------ALRKLSHSLS 243 (271)
Q Consensus 194 ---------~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~---------------------~~r~L~~lak 243 (271)
...-+..+-+......+| .++|+ |++||+..+|+++. .-..|.++++
T Consensus 102 ~~~~e~~~~a~~~L~~VgL~~~~~~~P-~qLSG--GMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~ 178 (248)
T COG1116 102 KSKAEARERAKELLELVGLAGFEDKYP-HQLSG--GMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWE 178 (248)
T ss_pred cchHhHHHHHHHHHHHcCCcchhhcCc-cccCh--HHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHH
Confidence 111233444444445553 56665 99999999999842 2236677899
Q ss_pred hcCcEEEEEccccc
Q 024152 244 LSQTILIFINQVFS 257 (271)
Q Consensus 244 e~~~~Vi~~sql~~ 257 (271)
+.+.||++++|--+
T Consensus 179 ~~~~TvllVTHdi~ 192 (248)
T COG1116 179 ETRKTVLLVTHDVD 192 (248)
T ss_pred hhCCEEEEEeCCHH
Confidence 99999999999653
No 70
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.53 E-value=4.6e-15 Score=128.30 Aligned_cols=138 Identities=18% Similarity=0.240 Sum_probs=96.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC---CCHHHHHHcCCcCCcceecCCCCHHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA---LDPSLAETIGVKTENLLLAQPDCGEQALSLVDT 191 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~---~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~ 191 (271)
.+++|++++|.||||||||||++++++...+.+|.|. +++... ..+.+++.++|.+|........++.|++..-|.
T Consensus 24 ~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~-l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~ 102 (258)
T COG1120 24 SIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVL-LDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRY 102 (258)
T ss_pred EecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEE-ECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCC
Confidence 6889999999999999999999999999999999854 554432 335889999999998766666666666554432
Q ss_pred HHhc-------C-------CccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHH
Q 024152 192 LIRS-------G-------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALR 236 (271)
Q Consensus 192 l~~~-------~-------~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r 236 (271)
-... . .+..+-+..+.... -.++++ |++|++..+++++ +.+.
T Consensus 103 p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~-~~~LSG--GerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ 179 (258)
T COG1120 103 PHLGLFGRPSKEDEEIVEEALELLGLEHLADRP-VDELSG--GERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLE 179 (258)
T ss_pred cccccccCCCHhHHHHHHHHHHHhCcHHHhcCc-ccccCh--hHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHH
Confidence 1100 0 01111122222111 234444 8899998888884 4566
Q ss_pred HHHHHHhhcCcEEEEEcccc
Q 024152 237 KLSHSLSLSQTILIFINQVF 256 (271)
Q Consensus 237 ~L~~lake~~~~Vi~~sql~ 256 (271)
.++++.++.|.|||++.|--
T Consensus 180 ll~~l~~~~~~tvv~vlHDl 199 (258)
T COG1120 180 LLRDLNREKGLTVVMVLHDL 199 (258)
T ss_pred HHHHHHHhcCCEEEEEecCH
Confidence 77788889999999999943
No 71
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.51 E-value=2.5e-14 Score=123.26 Aligned_cols=138 Identities=17% Similarity=0.220 Sum_probs=92.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcc--eecCCCCHHHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENL--LLAQPDCGEQALSLVDTL 192 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~--~~~~~~~~~e~~~~~~~l 192 (271)
-+++|++++|+||||+|||||++.+++.+.|..|.|.+++...... .-..++||+||+. ....+.++.|++...+..
T Consensus 26 ~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~-~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~ 104 (254)
T COG1121 26 SVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKR-RKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYG 104 (254)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccc-ccCCeEEEcCcccccCCCCCcCHHHHHHccCcc
Confidence 6779999999999999999999999999999999977665432222 1135789999965 344567888887653211
Q ss_pred H----h----------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHH
Q 024152 193 I----R----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRK 237 (271)
Q Consensus 193 ~----~----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~ 237 (271)
. . ...++.|-+-.+... +-.++|+ |+.||+..+|+++ .+.+-
T Consensus 105 ~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r-~i~~LSG--GQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~l 181 (254)
T COG1121 105 KKGWFRRLNKKDKEKVDEALERVGMEDLRDR-QIGELSG--GQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDL 181 (254)
T ss_pred cccccccccHHHHHHHHHHHHHcCchhhhCC-cccccCc--HHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHH
Confidence 0 0 001111111111111 1234444 8999999999883 35556
Q ss_pred HHHHHhhcCcEEEEEccccc
Q 024152 238 LSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 238 L~~lake~~~~Vi~~sql~~ 257 (271)
|+++.++ |++|++++|--.
T Consensus 182 L~~l~~e-g~tIl~vtHDL~ 200 (254)
T COG1121 182 LKELRQE-GKTVLMVTHDLG 200 (254)
T ss_pred HHHHHHC-CCEEEEEeCCcH
Confidence 6666666 999999999653
No 72
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.50 E-value=4.5e-14 Score=125.79 Aligned_cols=149 Identities=15% Similarity=0.127 Sum_probs=103.5
Q ss_pred HHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC-CHHHHHHcCCcCCcceecCCCCHHH
Q 024152 106 ALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-DPSLAETIGVKTENLLLAQPDCGEQ 184 (271)
Q Consensus 106 ~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~-~~~~~~~~g~~~~~~~~~~~~~~~e 184 (271)
.|+.+.. -+++|++++|.||||+|||||++.+++...+.+|.|.+++..... .....+.+||.+|...+++.+|+.|
T Consensus 20 ~l~~vs~--~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e 97 (293)
T COG1131 20 ALDGVSF--EVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRE 97 (293)
T ss_pred EEeceeE--EEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHH
Confidence 3444433 678999999999999999999999999999999997766544333 2467788999999999999999999
Q ss_pred HHHHHHHHHhcCC-ccEEEEcchhhhcC--------CCccCCccchhhHHHHHHHHH---------------------HH
Q 024152 185 ALSLVDTLIRSGS-VDVVVVDSVAALVP--------KGELDGEMGDAHMAMQARLMS---------------------QA 234 (271)
Q Consensus 185 ~~~~~~~l~~~~~-~~lvvID~l~~~~~--------~~~l~~~~g~~~~~~~~~~l~---------------------~~ 234 (271)
++.+...+..... ...-.++.+..... -..++ .|++||...+.++. .+
T Consensus 98 ~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS--~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~ 175 (293)
T COG1131 98 NLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLS--GGMKQRLSIALALLHDPELLILDEPTSGLDPESRREI 175 (293)
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcC--HHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHH
Confidence 9988776653211 01111222221111 11233 37888888887772 34
Q ss_pred HHHHHHHHhhcCcEEEEEcccccc
Q 024152 235 LRKLSHSLSLSQTILIFINQVFSI 258 (271)
Q Consensus 235 ~r~L~~lake~~~~Vi~~sql~~~ 258 (271)
...|+.++++.+++|+++||....
T Consensus 176 ~~~l~~l~~~g~~tvlissH~l~e 199 (293)
T COG1131 176 WELLRELAKEGGVTILLSTHILEE 199 (293)
T ss_pred HHHHHHHHhCCCcEEEEeCCcHHH
Confidence 445555666677999999998754
No 73
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.49 E-value=9.1e-14 Score=117.00 Aligned_cols=143 Identities=17% Similarity=0.198 Sum_probs=100.9
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC---CCHHHHHHcCCcCCcceecCCCCHHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA---LDPSLAETIGVKTENLLLAQPDCGEQALSLVDT 191 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~---~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~ 191 (271)
.+++|++++|.|+||+|||||+++|++...+.+|.|.|-+.+-. ..+..+..+++.+|.-.+++.+|++|++.....
T Consensus 25 ~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~ 104 (237)
T COG0410 25 EVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAY 104 (237)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhh
Confidence 56799999999999999999999999999999998665443221 122445557889999999999999999876543
Q ss_pred HHhcCCccEEEEcchhhhcCC-----Ccc--CCccchhhHHHHHHHH---------------------HHHHHHHHHHHh
Q 024152 192 LIRSGSVDVVVVDSVAALVPK-----GEL--DGEMGDAHMAMQARLM---------------------SQALRKLSHSLS 243 (271)
Q Consensus 192 l~~~~~~~lvvID~l~~~~~~-----~~l--~~~~g~~~~~~~~~~l---------------------~~~~r~L~~lak 243 (271)
.........-.+|.+-.++|+ ... .-+.|++|+...+|++ .++.+.++.+.+
T Consensus 105 ~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~ 184 (237)
T COG0410 105 ARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRK 184 (237)
T ss_pred cccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHH
Confidence 322111222225555555551 111 1133788888888887 456667777777
Q ss_pred hcCcEEEEEccccc
Q 024152 244 LSQTILIFINQVFS 257 (271)
Q Consensus 244 e~~~~Vi~~sql~~ 257 (271)
+.+.+|+++-|...
T Consensus 185 ~~g~tIlLVEQn~~ 198 (237)
T COG0410 185 EGGMTILLVEQNAR 198 (237)
T ss_pred cCCcEEEEEeccHH
Confidence 88999999998764
No 74
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.49 E-value=5.1e-14 Score=119.10 Aligned_cols=140 Identities=17% Similarity=0.196 Sum_probs=103.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC--CC---HHHHHHcCCcCCcceecCCCCHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA--LD---PSLAETIGVKTENLLLAQPDCGEQALSLV 189 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~--~~---~~~~~~~g~~~~~~~~~~~~~~~e~~~~~ 189 (271)
-+++|++++|.|++|+|||||++.|.+...|++|.|.+++.+-. .. ..+.+++|+.+|.--++..+++.|++++.
T Consensus 30 ~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafp 109 (263)
T COG1127 30 DVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFP 109 (263)
T ss_pred eecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhhee
Confidence 67899999999999999999999999999999999776664321 11 15677899999999999999999887763
Q ss_pred HHHHh-----------cCCccEEEEcch-hhhcCCCccCCccchhhHHHHHHHHH---------------------HHHH
Q 024152 190 DTLIR-----------SGSVDVVVVDSV-AALVPKGELDGEMGDAHMAMQARLMS---------------------QALR 236 (271)
Q Consensus 190 ~~l~~-----------~~~~~lvvID~l-~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r 236 (271)
-+... ..++.+|-+..- ...+| .++++ |+.+|+..+|+++ .+-.
T Consensus 110 lre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P-sELSG--GM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~ 186 (263)
T COG1127 110 LREHTKLPESLIRELVLMKLELVGLRGAAADLYP-SELSG--GMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDE 186 (263)
T ss_pred hHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc-hhhcc--hHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHH
Confidence 32211 123444545444 44453 66766 8899999999983 2333
Q ss_pred HHHHHHhhcCcEEEEEccccc
Q 024152 237 KLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 237 ~L~~lake~~~~Vi~~sql~~ 257 (271)
.++.+-+.++.|+++++|-..
T Consensus 187 LI~~L~~~lg~T~i~VTHDl~ 207 (263)
T COG1127 187 LIRELNDALGLTVIMVTHDLD 207 (263)
T ss_pred HHHHHHHhhCCEEEEEECChH
Confidence 445556779999999999763
No 75
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.49 E-value=6.2e-14 Score=113.97 Aligned_cols=141 Identities=20% Similarity=0.247 Sum_probs=100.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHH----
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVD---- 190 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~---- 190 (271)
-++.|++++|.||+|+|||||.+.||+...|.+|.+.+.+.+....+-..+=+.+.+|..+++.+.++++++.+-.
T Consensus 21 ~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~L 100 (231)
T COG3840 21 TVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGL 100 (231)
T ss_pred eecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCccc
Confidence 5789999999999999999999999999999999855544444444444455678889888888888887765311
Q ss_pred ------HHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHH---------------------HHHHHHHHHHHh
Q 024152 191 ------TLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLM---------------------SQALRKLSHSLS 243 (271)
Q Consensus 191 ------~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l---------------------~~~~r~L~~lak 243 (271)
+...+.....+-+.......| .++++ |++||+..+|.+ .+++..+..++.
T Consensus 101 kL~a~~r~~v~~aa~~vGl~~~~~RLP-~~LSG--GqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~ 177 (231)
T COG3840 101 KLNAEQREKVEAAAAQVGLAGFLKRLP-GELSG--GQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCD 177 (231)
T ss_pred ccCHHHHHHHHHHHHHhChhhHhhhCc-cccCc--hHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHH
Confidence 111111122233333333332 45555 899999998886 356667788899
Q ss_pred hcCcEEEEEcccccc
Q 024152 244 LSQTILIFINQVFSI 258 (271)
Q Consensus 244 e~~~~Vi~~sql~~~ 258 (271)
|.+.|+++++|.-++
T Consensus 178 E~~~TllmVTH~~~D 192 (231)
T COG3840 178 ERKMTLLMVTHHPED 192 (231)
T ss_pred hhCCEEEEEeCCHHH
Confidence 999999999997643
No 76
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.46 E-value=7.8e-14 Score=127.43 Aligned_cols=139 Identities=15% Similarity=0.193 Sum_probs=97.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC-HHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 193 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~-~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~ 193 (271)
-+++|++++|.||||||||||++.|++...+..|.|. ++.+.... ....+.+++.+|+..+++.+++.+++.+..+..
T Consensus 26 ~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~-~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~ 104 (356)
T PRK11650 26 DVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIW-IGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIR 104 (356)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEE-ECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhc
Confidence 5679999999999999999999999999999999855 44432221 223467999999999998899999887653321
Q ss_pred h----------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHH
Q 024152 194 R----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSL 242 (271)
Q Consensus 194 ~----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~la 242 (271)
. ..-++.+-++.+....+ .++++ |++||+..++++. .....|+++.
T Consensus 105 ~~~~~~~~~~~~~~l~~~gL~~~~~~~~-~~LSg--Gq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~ 181 (356)
T PRK11650 105 GMPKAEIEERVAEAARILELEPLLDRKP-RELSG--GQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLH 181 (356)
T ss_pred CCCHHHHHHHHHHHHHHcCChhHhhCCh-hhCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 0 00122222333322221 33444 8999999999883 3444666667
Q ss_pred hhcCcEEEEEccccc
Q 024152 243 SLSQTILIFINQVFS 257 (271)
Q Consensus 243 ke~~~~Vi~~sql~~ 257 (271)
++.++|+|+++|-..
T Consensus 182 ~~~g~tii~vTHd~~ 196 (356)
T PRK11650 182 RRLKTTSLYVTHDQV 196 (356)
T ss_pred HhcCCEEEEEeCCHH
Confidence 778999999999653
No 77
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.45 E-value=1.4e-12 Score=108.59 Aligned_cols=144 Identities=20% Similarity=0.307 Sum_probs=103.8
Q ss_pred ccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHH--HHHcCCcCCc---
Q 024152 99 VVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSL--AETIGVKTEN--- 173 (271)
Q Consensus 99 ~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~--~~~~g~~~~~--- 173 (271)
-+++|-++||+.+| ||+|-|+++.|-|++|+|||.|+.+++.-...++..+.|+++|.+....+ +..++++..+
T Consensus 9 ii~~gndelDkrLG-GGiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l 87 (235)
T COG2874 9 IIKSGNDELDKRLG-GGIPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLL 87 (235)
T ss_pred hccCCcHHHHhhcc-CCCccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHh
Confidence 48899999999999 99999999999999999999999999999999999999999998876533 3345555432
Q ss_pred ---ceecC------CCCH---HHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHH
Q 024152 174 ---LLLAQ------PDCG---EQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHS 241 (271)
Q Consensus 174 ---~~~~~------~~~~---~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~l 241 (271)
+.+++ ..+. ..++..+-...+..+.++++||++......+ + .+++.+++..++.+
T Consensus 88 ~G~l~~~~~~~~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~-------~------~~~vl~fm~~~r~l 154 (235)
T COG2874 88 SGRLLFFPVNLEPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYD-------S------EDAVLNFMTFLRKL 154 (235)
T ss_pred cceeEEEEecccccccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcc-------c------HHHHHHHHHHHHHH
Confidence 22221 1112 2344444444455678999999998775311 0 13455666666655
Q ss_pred HhhcCcEEEEEccccc
Q 024152 242 LSLSQTILIFINQVFS 257 (271)
Q Consensus 242 ake~~~~Vi~~sql~~ 257 (271)
+ ..|.+|+++.|...
T Consensus 155 ~-d~gKvIilTvhp~~ 169 (235)
T COG2874 155 S-DLGKVIILTVHPSA 169 (235)
T ss_pred H-hCCCEEEEEeChhh
Confidence 4 57888998888663
No 78
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.45 E-value=7.8e-14 Score=114.74 Aligned_cols=137 Identities=17% Similarity=0.254 Sum_probs=92.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCC--CCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE--HALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTL 192 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e--~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l 192 (271)
-+|+|.++.|.||||+|||||+-.++.....+.|.|.+-+.+ ....+.+++.+.+.-|...+....++++++.+-|.-
T Consensus 23 ~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfP 102 (252)
T COG4604 23 DIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFP 102 (252)
T ss_pred eecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHHhhchhhheeEHHHHhhcCCCc
Confidence 788999999999999999999999999999999985554433 334467888888887776666666777776665443
Q ss_pred HhcCCc------------cEEEEcchhhhcCCCccCCccchhhHHHHHHHH---------------------HHHHHHHH
Q 024152 193 IRSGSV------------DVVVVDSVAALVPKGELDGEMGDAHMAMQARLM---------------------SQALRKLS 239 (271)
Q Consensus 193 ~~~~~~------------~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l---------------------~~~~r~L~ 239 (271)
+.++.+ +..-+..|...+ .+++++ |++||...+..+ .++.+.|+
T Consensus 103 YSqGRlt~eD~~~I~~aieyl~L~~l~dry-Ld~LSG--GQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lr 179 (252)
T COG4604 103 YSQGRLTKEDRRIINEAIEYLHLEDLSDRY-LDELSG--GQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILR 179 (252)
T ss_pred ccCCCCchHHHHHHHHHHHHhcccchHHHh-HHhccc--chhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHH
Confidence 322221 111111122222 233333 566655444433 35677788
Q ss_pred HHHhhcCcEEEEEcc
Q 024152 240 HSLSLSQTILIFINQ 254 (271)
Q Consensus 240 ~lake~~~~Vi~~sq 254 (271)
++++|+|.||+++-|
T Consensus 180 rla~el~KtiviVlH 194 (252)
T COG4604 180 RLADELGKTIVVVLH 194 (252)
T ss_pred HHHHHhCCeEEEEEe
Confidence 889999999999877
No 79
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.44 E-value=1.6e-13 Score=125.28 Aligned_cols=139 Identities=16% Similarity=0.160 Sum_probs=97.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC-HHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 193 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~-~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~ 193 (271)
-+++|++++|.||||||||||++.|++...++.|.|. ++++.... ....+.+++.+|+..+++.+++.+++.+..+..
T Consensus 26 ~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~-i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~ 104 (353)
T TIGR03265 26 SVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIY-QGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNR 104 (353)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEE-ECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhc
Confidence 5669999999999999999999999999999999855 44433221 233567999999999999999999887653321
Q ss_pred h----------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHH
Q 024152 194 R----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSL 242 (271)
Q Consensus 194 ~----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~la 242 (271)
. ..-++.+-++.+.... ..+++ .|++|++..++++. +....|+++.
T Consensus 105 ~~~~~~~~~~~~~~l~~l~L~~~~~~~-~~~LS--gGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~ 181 (353)
T TIGR03265 105 GMGRAEVAERVAELLDLVGLPGSERKY-PGQLS--GGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQ 181 (353)
T ss_pred CCCHHHHHHHHHHHHHHcCCCchhhCC-hhhCC--HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 0 0012222233322222 12333 38999999999883 3344566667
Q ss_pred hhcCcEEEEEccccc
Q 024152 243 SLSQTILIFINQVFS 257 (271)
Q Consensus 243 ke~~~~Vi~~sql~~ 257 (271)
++.++|+|+++|-..
T Consensus 182 ~~~~~tvi~vTHd~~ 196 (353)
T TIGR03265 182 RRLGVTTIMVTHDQE 196 (353)
T ss_pred HhcCCEEEEEcCCHH
Confidence 778999999999774
No 80
>KOG1433 consensus DNA repair protein RAD51/RHP55 [Replication, recombination and repair]
Probab=99.44 E-value=9.9e-13 Score=117.23 Aligned_cols=158 Identities=29% Similarity=0.463 Sum_probs=109.1
Q ss_pred CCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCH----HHHHHcCCcC
Q 024152 96 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP----SLAETIGVKT 171 (271)
Q Consensus 96 ~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~----~~~~~~g~~~ 171 (271)
....++||..+||..++ ||++.|.+++|+||||+|||.|+++++....-.++.++|++.+..+.. .++.+.+...
T Consensus 89 ~~~~l~Tg~~~lD~lL~-gGi~~g~~TEi~G~p~~GKtQlc~~~~v~~~gge~~~l~IDs~s~~~~~~~~~ia~~~~~~~ 167 (326)
T KOG1433|consen 89 ELGFLSTGSKALDKLLG-GGIETGSLTELVGPPGSGKTQLCHTLAVTCGGGEGKVLYIDTESTFRLERLTEIAGRSGLRG 167 (326)
T ss_pred cceeeccchhhhhHhhc-cCcccCceeEEecCCCccHHHHHHHHHHhccCCcceEEEEecchhcccchhhhhhhhhhhhh
Confidence 44569999999999999 999999999999999999999998888877444568999998875432 2333333322
Q ss_pred C----cceecCCCCHHH---HHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhh
Q 024152 172 E----NLLLAQPDCGEQ---ALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSL 244 (271)
Q Consensus 172 ~----~~~~~~~~~~~e---~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake 244 (271)
. ++-+....+.++ ....+.....+....++++|+....+ +.++.+ .++ -..++.-++...+.|++++++
T Consensus 168 ~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~l~~vds~ta~~-~~~~~g-~~~--~~a~~~~~~~~~~~l~~la~~ 243 (326)
T KOG1433|consen 168 RDTLSNLMLARAYNLDHQLQLIQEAEIMINQSRVKLLIVDSATALY-RTTFKG-RGE--LSARQMLLAKFLRSLKKLADE 243 (326)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccceeEEEeccccccc-cccccc-ccc--hHHHHHHHHHHHHHHHHHHHh
Confidence 2 111111111121 11122223344567889999988877 455544 222 224556678888999999999
Q ss_pred cCcEEEEEcccccc
Q 024152 245 SQTILIFINQVFSI 258 (271)
Q Consensus 245 ~~~~Vi~~sql~~~ 258 (271)
.+.+||+.||+...
T Consensus 244 ~g~~vvitn~v~~~ 257 (326)
T KOG1433|consen 244 FGVAVVITNQVTAQ 257 (326)
T ss_pred cCceEEEecccccc
Confidence 99999999998854
No 81
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.43 E-value=2e-13 Score=125.50 Aligned_cols=139 Identities=15% Similarity=0.197 Sum_probs=97.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC-CHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-DPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 193 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~-~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~ 193 (271)
-+++|++++|.||||||||||++.|++...++.|.|. ++++... .....+.+++.+|+..+++.+++.+++.+..+..
T Consensus 36 ~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~-~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~ 114 (375)
T PRK09452 36 TINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIM-LDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQ 114 (375)
T ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE-ECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhc
Confidence 5779999999999999999999999999999999855 4443322 1233567899999999999999999887643211
Q ss_pred h----------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHH
Q 024152 194 R----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSL 242 (271)
Q Consensus 194 ~----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~la 242 (271)
. ..-++++-++.+....+ ..++ .|++||+..++++. .+...|+++.
T Consensus 115 ~~~~~~~~~~~~~~l~~~~l~~~~~~~p-~~LS--gGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~ 191 (375)
T PRK09452 115 KTPAAEITPRVMEALRMVQLEEFAQRKP-HQLS--GGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQ 191 (375)
T ss_pred CCCHHHHHHHHHHHHHHcCCchhhhCCh-hhCC--HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHH
Confidence 0 00122222332222221 3344 38999999999883 3444666667
Q ss_pred hhcCcEEEEEccccc
Q 024152 243 SLSQTILIFINQVFS 257 (271)
Q Consensus 243 ke~~~~Vi~~sql~~ 257 (271)
++.++|+|+++|-..
T Consensus 192 ~~~g~tiI~vTHd~~ 206 (375)
T PRK09452 192 RKLGITFVFVTHDQE 206 (375)
T ss_pred HhcCCEEEEEeCCHH
Confidence 778999999999764
No 82
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.43 E-value=2.2e-13 Score=124.21 Aligned_cols=139 Identities=16% Similarity=0.196 Sum_probs=96.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC-HHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 193 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~-~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~ 193 (271)
-+++|++++|.||||||||||++.|++...++.|.+. ++.+.... ....+.+++.+|+..+++.+++.+++.+..+..
T Consensus 28 ~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~-~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~ 106 (351)
T PRK11432 28 TIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIF-IDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKML 106 (351)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEE-ECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHc
Confidence 5679999999999999999999999999999999854 44432221 233467899999999998899998887643211
Q ss_pred h----------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHH
Q 024152 194 R----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSL 242 (271)
Q Consensus 194 ~----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~la 242 (271)
. ..-++++-+..+.... ..++++ |++||+..+|++. +....|+.+.
T Consensus 107 ~~~~~~~~~~v~~~l~~~gl~~~~~r~-~~~LSg--Gq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~ 183 (351)
T PRK11432 107 GVPKEERKQRVKEALELVDLAGFEDRY-VDQISG--GQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQ 183 (351)
T ss_pred CCCHHHHHHHHHHHHHHcCCchhhcCC-hhhCCH--HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 0 0112222233322222 133443 8999999999983 2334556666
Q ss_pred hhcCcEEEEEccccc
Q 024152 243 SLSQTILIFINQVFS 257 (271)
Q Consensus 243 ke~~~~Vi~~sql~~ 257 (271)
++.++|+|+++|...
T Consensus 184 ~~~g~tii~vTHd~~ 198 (351)
T PRK11432 184 QQFNITSLYVTHDQS 198 (351)
T ss_pred HhcCCEEEEEcCCHH
Confidence 778999999999774
No 83
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.42 E-value=2.8e-13 Score=114.38 Aligned_cols=149 Identities=19% Similarity=0.199 Sum_probs=102.3
Q ss_pred CcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC-----HHHHHHcCCcCCcceec
Q 024152 103 GSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-----PSLAETIGVKTENLLLA 177 (271)
Q Consensus 103 g~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~-----~~~~~~~g~~~~~~~~~ 177 (271)
|-..|+.+-- -+++||+++|.|++|+|||||++++.+...+..|.+.+.+.+.... +.+++.+|+.+|.+.+.
T Consensus 16 ~~~aL~~Vnl--~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv 93 (258)
T COG3638 16 GHQALKDVNL--EINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLV 93 (258)
T ss_pred CceeeeeEeE--EeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccCCcc
Confidence 4445555544 6789999999999999999999999999999999855544332221 35678899999999988
Q ss_pred CCCCHHHHHHHHH--------HHHhcC----------CccEE-EEcchhhhcCCCccCCccchhhHHHHHHHHH------
Q 024152 178 QPDCGEQALSLVD--------TLIRSG----------SVDVV-VVDSVAALVPKGELDGEMGDAHMAMQARLMS------ 232 (271)
Q Consensus 178 ~~~~~~e~~~~~~--------~l~~~~----------~~~lv-vID~l~~~~~~~~l~~~~g~~~~~~~~~~l~------ 232 (271)
+..++-+++...+ .+..-. .+..+ +.|+. ......+++ |++||+..+|++.
T Consensus 94 ~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A--~qra~~LSG--GQQQRVaIARaL~Q~pkiI 169 (258)
T COG3638 94 PRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKA--YQRASTLSG--GQQQRVAIARALVQQPKII 169 (258)
T ss_pred cccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHH--HHHhccCCc--chhHHHHHHHHHhcCCCEE
Confidence 8888776643321 111000 01111 12221 111344555 8999999999984
Q ss_pred ---------------HHHHHHHHHHhhcCcEEEEEccccc
Q 024152 233 ---------------QALRKLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 233 ---------------~~~r~L~~lake~~~~Vi~~sql~~ 257 (271)
..+..|++++++.|+|||+..|.-+
T Consensus 170 LADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vd 209 (258)
T COG3638 170 LADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVD 209 (258)
T ss_pred ecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHH
Confidence 3555788889999999999998653
No 84
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.41 E-value=2e-13 Score=117.71 Aligned_cols=140 Identities=19% Similarity=0.259 Sum_probs=105.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEE-----EcCC-CCCCHHHHHHcCCcCCcceecCCCCHHHHHHHH
Q 024152 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVF-----IDAE-HALDPSLAETIGVKTENLLLAQPDCGEQALSLV 189 (271)
Q Consensus 116 l~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~-----~~~e-~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~ 189 (271)
++.-.+++|.|++|+||||+.++|++...|+.|.+.. ++.+ ..+-+.-.+++||+||+-++++++++..++.+.
T Consensus 21 ~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~YG 100 (352)
T COG4148 21 LPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYG 100 (352)
T ss_pred CCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecchhhh
Confidence 4444799999999999999999999999998876543 2333 223345578899999999999999998888776
Q ss_pred HHHHhc----CCccEEEEcchhhhcCCCccCCccchhhHHHHHHHH---------------------HHHHHHHHHHHhh
Q 024152 190 DTLIRS----GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLM---------------------SQALRKLSHSLSL 244 (271)
Q Consensus 190 ~~l~~~----~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l---------------------~~~~r~L~~lake 244 (271)
+..... .-++++-|..|...+| ..+++ |++||+...|++ .+++--|.++.+|
T Consensus 101 ~~~~~~~~fd~iv~lLGI~hLL~R~P-~~LSG--GEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e 177 (352)
T COG4148 101 MWKSMRAQFDQLVALLGIEHLLDRYP-GTLSG--GEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDE 177 (352)
T ss_pred hcccchHhHHHHHHHhCcHHHHhhCC-CccCc--chhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHh
Confidence 543311 1144555666655554 34444 899999999987 4566688889999
Q ss_pred cCcEEEEEcccccc
Q 024152 245 SQTILIFINQVFSI 258 (271)
Q Consensus 245 ~~~~Vi~~sql~~~ 258 (271)
.++||+.+||-.+.
T Consensus 178 ~~IPIlYVSHS~~E 191 (352)
T COG4148 178 INIPILYVSHSLDE 191 (352)
T ss_pred cCCCEEEEecCHHH
Confidence 99999999997754
No 85
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.41 E-value=4.8e-13 Score=121.54 Aligned_cols=139 Identities=17% Similarity=0.214 Sum_probs=94.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC--C-H---HHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D-P---SLAETIGVKTENLLLAQPDCGEQALSL 188 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~--~-~---~~~~~~g~~~~~~~~~~~~~~~e~~~~ 188 (271)
-+++|++++|.|+||+|||||+++|++...++.|.|.+ +++... . + ..++.+++.+|...++...++.+++.+
T Consensus 27 ~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i-~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~ 105 (343)
T TIGR02314 27 HVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIV-DGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVAL 105 (343)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-CCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHH
Confidence 57799999999999999999999999999999998554 433221 1 1 235578999999888877888888766
Q ss_pred HHHHHh----------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHH
Q 024152 189 VDTLIR----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRK 237 (271)
Q Consensus 189 ~~~l~~----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~ 237 (271)
...... ..-++.+-+......+ ..++++ |++||+..++++. .+...
T Consensus 106 ~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~-~~~LSg--GqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~l 182 (343)
T TIGR02314 106 PLELDNTPKDEIKRKVTELLALVGLGDKHDSY-PSNLSG--GQKQRVAIARALASNPKVLLCDEATSALDPATTQSILEL 182 (343)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCCchhhhCC-hhhCCH--HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 433210 0001222222221222 133443 8999999999983 34445
Q ss_pred HHHHHhhcCcEEEEEccccc
Q 024152 238 LSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 238 L~~lake~~~~Vi~~sql~~ 257 (271)
|+++.++.++|||+++|-..
T Consensus 183 L~~l~~~~g~tiiliTH~~~ 202 (343)
T TIGR02314 183 LKEINRRLGLTILLITHEMD 202 (343)
T ss_pred HHHHHHhcCCEEEEEeCCHH
Confidence 66667778999999999763
No 86
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.41 E-value=3.6e-13 Score=123.89 Aligned_cols=139 Identities=16% Similarity=0.163 Sum_probs=96.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC-CHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-DPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 193 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~-~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~ 193 (271)
-+++|++++|.||||||||||++.|++...++.|.|. ++++... .+...+.+|+.+|+..+++.+++.+++.+..+..
T Consensus 41 ~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~-i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~ 119 (377)
T PRK11607 41 TIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIM-LDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQD 119 (377)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE-ECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc
Confidence 5679999999999999999999999999999999854 5544322 1234567999999999999999999887653321
Q ss_pred h----------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHH
Q 024152 194 R----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSL 242 (271)
Q Consensus 194 ~----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~la 242 (271)
. ..-++.+-+..+.... ...++ .|++||...++++. .....|+++.
T Consensus 120 ~~~~~~~~~~v~~~l~~l~L~~~~~~~-~~~LS--gGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~ 196 (377)
T PRK11607 120 KLPKAEIASRVNEMLGLVHMQEFAKRK-PHQLS--GGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDIL 196 (377)
T ss_pred CCCHHHHHHHHHHHHHHcCCchhhcCC-hhhCC--HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 0 0011222222222222 12344 38999999999983 2223556667
Q ss_pred hhcCcEEEEEccccc
Q 024152 243 SLSQTILIFINQVFS 257 (271)
Q Consensus 243 ke~~~~Vi~~sql~~ 257 (271)
++.++|+|+++|-..
T Consensus 197 ~~~g~tii~vTHd~~ 211 (377)
T PRK11607 197 ERVGVTCVMVTHDQE 211 (377)
T ss_pred HhcCCEEEEEcCCHH
Confidence 788999999999764
No 87
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.40 E-value=4.7e-13 Score=122.48 Aligned_cols=140 Identities=15% Similarity=0.164 Sum_probs=96.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcC--CeEEEEcCCCCC-CHHHHHHcCCcCCcceecCCCCHHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQG--GYCVFIDAEHAL-DPSLAETIGVKTENLLLAQPDCGEQALSLVDT 191 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~--g~v~~~~~e~~~-~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~ 191 (271)
-+++|++++|.||||+|||||++.|++...++. |.+. ++.+... .....+.+++.+|+..+++.+++.+++.+..+
T Consensus 27 ~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~-~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~ 105 (362)
T TIGR03258 27 EIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIA-IADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLR 105 (362)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEE-ECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHH
Confidence 567999999999999999999999999999988 9855 4443222 12345678999999999988999998876433
Q ss_pred HHh----------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHH
Q 024152 192 LIR----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSH 240 (271)
Q Consensus 192 l~~----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~ 240 (271)
... ..-++.+-++.+.... -..++ .|++||+..++++. ++...|++
T Consensus 106 ~~~~~~~~~~~~v~~~l~~~gL~~~~~~~-~~~LS--gGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~ 182 (362)
T TIGR03258 106 AQKMPKADIAERVADALKLVGLGDAAAHL-PAQLS--GGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAA 182 (362)
T ss_pred HcCCCHHHHHHHHHHHHHhcCCCchhhCC-hhhCC--HHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHH
Confidence 210 0012223333332222 13344 38999999999983 33445556
Q ss_pred HHhhc-CcEEEEEcccccc
Q 024152 241 SLSLS-QTILIFINQVFSI 258 (271)
Q Consensus 241 lake~-~~~Vi~~sql~~~ 258 (271)
+.++. ++|+|+++|....
T Consensus 183 l~~~~~g~til~vTHd~~e 201 (362)
T TIGR03258 183 LHEELPELTILCVTHDQDD 201 (362)
T ss_pred HHHhCCCCEEEEEeCCHHH
Confidence 66676 8999999997743
No 88
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.40 E-value=1.4e-12 Score=107.75 Aligned_cols=148 Identities=18% Similarity=0.193 Sum_probs=101.1
Q ss_pred HHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCH-HHHHHcCCcCCcceecCCCCHH
Q 024152 105 FALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP-SLAETIGVKTENLLLAQPDCGE 183 (271)
Q Consensus 105 ~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~-~~~~~~g~~~~~~~~~~~~~~~ 183 (271)
..++.+.- -.+.|++++|.|+||+||||+++.|+..+.|+.|.|..-+......+ ...+.+|+.+....++..++.+
T Consensus 16 ~AvrdVSF--~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~r 93 (245)
T COG4555 16 QAVRDVSF--EAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTAR 93 (245)
T ss_pred hhhhheeE--EeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHH
Confidence 35555654 78899999999999999999999999999999998655444433333 5678899999888888889999
Q ss_pred HHHHHHHHHHh--cCC---------ccEEEEcchhhhcCCCccCCccchhhHHHHHHHH--------------------H
Q 024152 184 QALSLVDTLIR--SGS---------VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLM--------------------S 232 (271)
Q Consensus 184 e~~~~~~~l~~--~~~---------~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l--------------------~ 232 (271)
|++.++-++.. ... -.+-.-|++.... .+++ .|.+|++..+|++ +
T Consensus 94 Enl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv--~~~S--~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~ 169 (245)
T COG4555 94 ENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRV--GEFS--TGMKQKVAIARALVHDPSILVLDEPTSGLDIRTR 169 (245)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHH--hhhc--hhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHH
Confidence 88776544321 000 0011112221111 1222 2677777777776 3
Q ss_pred HHHHHHHHHHhhcCcEEEEEcccccc
Q 024152 233 QALRKLSHSLSLSQTILIFINQVFSI 258 (271)
Q Consensus 233 ~~~r~L~~lake~~~~Vi~~sql~~~ 258 (271)
..++.+....++.|.+||+.||....
T Consensus 170 r~~~dfi~q~k~egr~viFSSH~m~E 195 (245)
T COG4555 170 RKFHDFIKQLKNEGRAVIFSSHIMQE 195 (245)
T ss_pred HHHHHHHHHhhcCCcEEEEecccHHH
Confidence 45556666678889999999998743
No 89
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.40 E-value=6.5e-13 Score=112.62 Aligned_cols=124 Identities=20% Similarity=0.295 Sum_probs=90.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH-
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI- 193 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~- 193 (271)
-+++|++.++.|+||+||||+.++|++.+.++.|.+-|.+.+ ..+....++||.|+.-.+++.+++.|.+.++.+++
T Consensus 24 ~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~--~~~~~~~rIGyLPEERGLy~k~tv~dql~yla~LkG 101 (300)
T COG4152 24 EVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGP--LSQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKG 101 (300)
T ss_pred eecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcc--hhhhhhhhcccChhhhccCccCcHHHHHHHHHHhcC
Confidence 677999999999999999999999999999999998887754 33456778999999988888888875443322110
Q ss_pred -------------------------------------------hcCCccEEEEcchh-hhcCCCccCCccchhhHHHHHH
Q 024152 194 -------------------------------------------RSGSVDVVVVDSVA-ALVPKGELDGEMGDAHMAMQAR 229 (271)
Q Consensus 194 -------------------------------------------~~~~~~lvvID~l~-~~~~~~~l~~~~g~~~~~~~~~ 229 (271)
--+.|+++++|..- .+.| ..++
T Consensus 102 m~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDP--------------VN~e 167 (300)
T COG4152 102 MPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDP--------------VNVE 167 (300)
T ss_pred CcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCCh--------------hhHH
Confidence 01578888888643 2322 1123
Q ss_pred HHHHHHHHHHHHHhhcCcEEEEEcccccc
Q 024152 230 LMSQALRKLSHSLSLSQTILIFINQVFSI 258 (271)
Q Consensus 230 ~l~~~~r~L~~lake~~~~Vi~~sql~~~ 258 (271)
.+.+... -.++.|.|||+.||.+..
T Consensus 168 lLk~~I~----~lk~~GatIifSsH~Me~ 192 (300)
T COG4152 168 LLKDAIF----ELKEEGATIIFSSHRMEH 192 (300)
T ss_pred HHHHHHH----HHHhcCCEEEEecchHHH
Confidence 3334444 447899999999998854
No 90
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.39 E-value=4.8e-13 Score=122.13 Aligned_cols=139 Identities=17% Similarity=0.210 Sum_probs=94.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC-CHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-DPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 193 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~-~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~ 193 (271)
-+++|++++|.||||||||||++.|++...++.|.+. ++++... .....+.+++.+|+..+++.+++.+++.+.....
T Consensus 24 ~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~-i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~ 102 (353)
T PRK10851 24 DIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIR-FHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVL 102 (353)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-ECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhc
Confidence 5669999999999999999999999999999999855 4443221 1223457899999988888889988877543210
Q ss_pred h--------------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHH
Q 024152 194 R--------------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKL 238 (271)
Q Consensus 194 ~--------------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L 238 (271)
. ..-++.+-++.+.... ..+++ .|++|+...++++. ...+.|
T Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-~~~LS--gGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L 179 (353)
T PRK10851 103 PRRERPNAAAIKAKVTQLLEMVQLAHLADRY-PAQLS--GGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWL 179 (353)
T ss_pred ccccCCCHHHHHHHHHHHHHHcCCchhhhCC-hhhCC--HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence 0 0001222222222212 12344 38999999999983 344456
Q ss_pred HHHHhhcCcEEEEEccccc
Q 024152 239 SHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 239 ~~lake~~~~Vi~~sql~~ 257 (271)
+++.++.++|+|+++|-..
T Consensus 180 ~~l~~~~g~tii~vTHd~~ 198 (353)
T PRK10851 180 RQLHEELKFTSVFVTHDQE 198 (353)
T ss_pred HHHHHhcCCEEEEEeCCHH
Confidence 6667778999999999764
No 91
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.38 E-value=6.8e-13 Score=122.22 Aligned_cols=82 Identities=20% Similarity=0.230 Sum_probs=65.1
Q ss_pred CcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC---HHHHHHcCCcCCcceecCC
Q 024152 103 GSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQP 179 (271)
Q Consensus 103 g~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~---~~~~~~~g~~~~~~~~~~~ 179 (271)
|+..+|.+.- .+.+|++.+|.|.||+|||||++.+.+.+.|++|.+.+.+.+-.+. ...+..+|+++|++.+.+.
T Consensus 16 ~~~And~V~l--~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~ 93 (501)
T COG3845 16 GVVANDDVSL--SVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPT 93 (501)
T ss_pred CEEecCceee--eecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccc
Confidence 7777777765 8999999999999999999999999999999999865554443332 2455668889999888877
Q ss_pred CCHHHHH
Q 024152 180 DCGEQAL 186 (271)
Q Consensus 180 ~~~~e~~ 186 (271)
.|+.|++
T Consensus 94 lTV~ENi 100 (501)
T COG3845 94 LTVAENI 100 (501)
T ss_pred cchhhhh
Confidence 7776543
No 92
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.37 E-value=9.4e-13 Score=120.39 Aligned_cols=139 Identities=23% Similarity=0.269 Sum_probs=96.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC---HHH----HHHcCCcCCcceecCCCCHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSL----AETIGVKTENLLLAQPDCGEQALS 187 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~---~~~----~~~~g~~~~~~~~~~~~~~~e~~~ 187 (271)
-+++|++++|.|+||||||||+++|++...+.+|.|. ++++.... ..+ .+.+++.+|+..+++..++.+++.
T Consensus 15 ~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~-i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~eNi~ 93 (363)
T TIGR01186 15 AIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIF-IDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTILQNTS 93 (363)
T ss_pred EEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEE-ECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCHHHHHH
Confidence 5779999999999999999999999999999999855 55433221 122 457899999999888889988877
Q ss_pred HHHHHHh----------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHH
Q 024152 188 LVDTLIR----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALR 236 (271)
Q Consensus 188 ~~~~l~~----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r 236 (271)
+...+.. ..-++.+-++.....++ .++++ |++||...++++. .+..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p-~~LSG--Gq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~ 170 (363)
T TIGR01186 94 LGPELLGWPEQERKEKALELLKLVGLEEYEHRYP-DELSG--GMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQD 170 (363)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCCh-hhCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 6443210 00122232333222221 33443 8999999999883 3344
Q ss_pred HHHHHHhhcCcEEEEEccccc
Q 024152 237 KLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 237 ~L~~lake~~~~Vi~~sql~~ 257 (271)
.+..+.++.+.|||+++|-..
T Consensus 171 ~l~~l~~~~~~Tii~vTHd~~ 191 (363)
T TIGR01186 171 ELKKLQATLQKTIVFITHDLD 191 (363)
T ss_pred HHHHHHHhcCCEEEEEeCCHH
Confidence 555555667999999999774
No 93
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.37 E-value=8.9e-13 Score=121.13 Aligned_cols=139 Identities=15% Similarity=0.158 Sum_probs=92.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC-CHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-DPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 193 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~-~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~ 193 (271)
-+++|++++|.||||||||||++.|++...++.|.|.| +.+... .....+.+++.+|+..+++..++.+++.+.....
T Consensus 25 ~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~-~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~ 103 (369)
T PRK11000 25 DIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFI-GEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA 103 (369)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE-CCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhc
Confidence 56799999999999999999999999999999998654 433221 1123456899999988888889888876543211
Q ss_pred h----------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHH
Q 024152 194 R----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSL 242 (271)
Q Consensus 194 ~----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~la 242 (271)
. ..-++.+-++.+.... ...++ .|++|+...++++. .....|+++.
T Consensus 104 ~~~~~~~~~~~~~~l~~lgL~~~~~~~-~~~LS--gGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~ 180 (369)
T PRK11000 104 GAKKEEINQRVNQVAEVLQLAHLLDRK-PKALS--GGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLH 180 (369)
T ss_pred CCCHHHHHHHHHHHHHHcCChhhhcCC-hhhCC--HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 0 0001122222221111 12333 38999999999883 2333455566
Q ss_pred hhcCcEEEEEccccc
Q 024152 243 SLSQTILIFINQVFS 257 (271)
Q Consensus 243 ke~~~~Vi~~sql~~ 257 (271)
++.+.|||+++|-..
T Consensus 181 ~~~g~tvI~vTHd~~ 195 (369)
T PRK11000 181 KRLGRTMIYVTHDQV 195 (369)
T ss_pred HHhCCEEEEEeCCHH
Confidence 677999999999764
No 94
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.36 E-value=4e-12 Score=109.64 Aligned_cols=140 Identities=16% Similarity=0.156 Sum_probs=88.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC-CC----HHHHHHcCCcCCcceecCCCCHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA-LD----PSLAETIGVKTENLLLAQPDCGEQALSLV 189 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~-~~----~~~~~~~g~~~~~~~~~~~~~~~e~~~~~ 189 (271)
-+++|++++|.|+||+|||||++.+++...+..|.|.|.+.... .. ..+.+.+++.+|...++...++.+++.+.
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~ 101 (235)
T cd03261 22 DVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFP 101 (235)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHH
Confidence 57799999999999999999999999999999998655332211 11 23455688999987777767887776543
Q ss_pred HHHHhc-----------CCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHH
Q 024152 190 DTLIRS-----------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRK 237 (271)
Q Consensus 190 ~~l~~~-----------~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~ 237 (271)
...... .-++.+-+....... ...++ .|++|+...++++. .+.+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--gG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~ 178 (235)
T cd03261 102 LREHTRLSEEEIREIVLEKLEAVGLRGAEDLY-PAELS--GGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDL 178 (235)
T ss_pred HhhccCCCHHHHHHHHHHHHHHcCCchhhcCC-hhhCC--HHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHH
Confidence 211000 001111111111111 12233 38888888888873 23334
Q ss_pred HHHHHhhcCcEEEEEccccc
Q 024152 238 LSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 238 L~~lake~~~~Vi~~sql~~ 257 (271)
|..++++.+.+||+++|...
T Consensus 179 l~~~~~~~~~tvi~vsH~~~ 198 (235)
T cd03261 179 IRSLKKELGLTSIMVTHDLD 198 (235)
T ss_pred HHHHHHhcCcEEEEEecCHH
Confidence 55545556899999999764
No 95
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.35 E-value=1.7e-11 Score=98.44 Aligned_cols=132 Identities=25% Similarity=0.374 Sum_probs=88.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHH----cCCcCCcceecCCC----CHHHHHHHHHHH
Q 024152 121 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAET----IGVKTENLLLAQPD----CGEQALSLVDTL 192 (271)
Q Consensus 121 li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~----~g~~~~~~~~~~~~----~~~e~~~~~~~l 192 (271)
+++|.|+||+|||||+..++......++.++|++.+.......... .....++..+.... ........+...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERL 80 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHH
Confidence 4789999999999999999999998888999999987765433211 11122232222221 233333344445
Q ss_pred HhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccccc
Q 024152 193 IRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFSIN 259 (271)
Q Consensus 193 ~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~~~ 259 (271)
....++++++||+++.+.+... . -.......+.+.++.|...+++.++++|+++|.....
T Consensus 81 ~~~~~~~~lviDe~~~~~~~~~-~------~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 81 RERGGDDLIILDELTRLVRALR-E------IREGYPGELDEELRELLERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred HhCCCCEEEEEEcHHHHHHHHH-H------HHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCcc
Confidence 5567899999999998763110 0 0011223456778888888888999999999988654
No 96
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.35 E-value=8.4e-12 Score=103.42 Aligned_cols=124 Identities=19% Similarity=0.225 Sum_probs=81.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCH--HHHHHcCCcCCcc------eecCC----CCH------
Q 024152 121 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--SLAETIGVKTENL------LLAQP----DCG------ 182 (271)
Q Consensus 121 li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~--~~~~~~g~~~~~~------~~~~~----~~~------ 182 (271)
+++|.|+||+|||+|+.+++...+..+.+|+|++.|++... ..+..+|++.+.+ ...+. ...
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~ 80 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLR 80 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhh
Confidence 47899999999999999999999988889999999988765 3455567765432 11111 011
Q ss_pred HHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcccccc
Q 024152 183 EQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFSI 258 (271)
Q Consensus 183 ~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~~ 258 (271)
.+++..+.......++++++||+++..... ... .....+...+ ..+++.|+++++++|....
T Consensus 81 ~~~~~~i~~~~~~~~~~~lviD~~~~~~~~-------~~~---~~~~~i~~l~----~~l~~~g~tvi~v~~~~~~ 142 (187)
T cd01124 81 LELIQRLKDAIEEFKAKRVVIDSVSGLLLM-------EQS---TARLEIRRLL----FALKRFGVTTLLTSEQSGL 142 (187)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCcHHHhhc-------ChH---HHHHHHHHHH----HHHHHCCCEEEEEeccccC
Confidence 133455555555678999999999987631 000 1112222333 3334569999999997643
No 97
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.34 E-value=2.1e-12 Score=109.55 Aligned_cols=148 Identities=20% Similarity=0.148 Sum_probs=94.0
Q ss_pred HHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC---HHHHHHcCCcCCccee--cCC
Q 024152 105 FALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLL--AQP 179 (271)
Q Consensus 105 ~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~---~~~~~~~g~~~~~~~~--~~~ 179 (271)
..|+.+-- -+.+|+.++|+|++|||||||++.+++...+..|.|.|.+.+.... +.+.+.+.+++|++.- .+.
T Consensus 21 ~~l~~VS~--~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~ 98 (252)
T COG1124 21 HALNNVSL--EIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPR 98 (252)
T ss_pred hhhcceeE--EecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcc
Confidence 34444433 5779999999999999999999999999999999865544333222 2445566777877543 233
Q ss_pred CCHHHHHHHHHHHH--------hcCCccEEEEc-chhhhcCCCccCCccchhhHHHHHHHH-------------------
Q 024152 180 DCGEQALSLVDTLI--------RSGSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLM------------------- 231 (271)
Q Consensus 180 ~~~~e~~~~~~~l~--------~~~~~~lvvID-~l~~~~~~~~l~~~~g~~~~~~~~~~l------------------- 231 (271)
.++.+++.-..... ...-++.|-++ +....+ ..++++ |+.||...+|++
T Consensus 99 ~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~-P~eLSG--GQ~QRiaIARAL~~~PklLIlDEptSaLD~s 175 (252)
T COG1124 99 RTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRR-PHELSG--GQRQRIAIARALIPEPKLLILDEPTSALDVS 175 (252)
T ss_pred hhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcC-chhcCh--hHHHHHHHHHHhccCCCEEEecCchhhhcHH
Confidence 45555443322110 00001112222 112223 244554 788888888887
Q ss_pred --HHHHHHHHHHHhhcCcEEEEEccccc
Q 024152 232 --SQALRKLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 232 --~~~~r~L~~lake~~~~Vi~~sql~~ 257 (271)
++++..|..+.++++.+.+++||-..
T Consensus 176 iQa~IlnlL~~l~~~~~lt~l~IsHdl~ 203 (252)
T COG1124 176 VQAQILNLLLELKKERGLTYLFISHDLA 203 (252)
T ss_pred HHHHHHHHHHHHHHhcCceEEEEeCcHH
Confidence 46777888889999999999999763
No 98
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.34 E-value=4.6e-13 Score=110.45 Aligned_cols=142 Identities=15% Similarity=0.173 Sum_probs=97.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCH---HHHHHcCCcCCcceecCCCCHHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP---SLAETIGVKTENLLLAQPDCGEQALSLVDT 191 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~---~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~ 191 (271)
.+.+||++++.||||+||||...++.+.+.+++|+|.+-+..-+..+ ..+..+||.+|...++..+++++++..+..
T Consensus 26 ~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE 105 (243)
T COG1137 26 EVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLE 105 (243)
T ss_pred EEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccccccchHhhcCcHHHHHHHHHh
Confidence 67899999999999999999999999999999998554443322222 223347899999999999999988765543
Q ss_pred HHhcC-C--ccEEEEcch------hhhcCCCccCCccchhhHHHHHHHHH--------------------HHHHHHHHHH
Q 024152 192 LIRSG-S--VDVVVVDSV------AALVPKGELDGEMGDAHMAMQARLMS--------------------QALRKLSHSL 242 (271)
Q Consensus 192 l~~~~-~--~~lvvID~l------~~~~~~~~l~~~~g~~~~~~~~~~l~--------------------~~~r~L~~la 242 (271)
...+. . ....-+|.| ..+......+-+.|+++|...+|+++ ...+.+...+
T Consensus 106 ~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L 185 (243)
T COG1137 106 IREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHL 185 (243)
T ss_pred hhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHH
Confidence 32110 0 000011111 22222333444458999999999984 3445666778
Q ss_pred hhcCcEEEEEcccc
Q 024152 243 SLSQTILIFINQVF 256 (271)
Q Consensus 243 ke~~~~Vi~~sql~ 256 (271)
++.|+.|+++.|.-
T Consensus 186 ~~rgiGvLITDHNV 199 (243)
T COG1137 186 KDRGIGVLITDHNV 199 (243)
T ss_pred HhCCceEEEccccH
Confidence 89999999999864
No 99
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.34 E-value=5e-12 Score=109.30 Aligned_cols=140 Identities=17% Similarity=0.159 Sum_probs=87.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC-CC----HHHHHHcCCcCCcceecCCCCHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA-LD----PSLAETIGVKTENLLLAQPDCGEQALSLV 189 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~-~~----~~~~~~~g~~~~~~~~~~~~~~~e~~~~~ 189 (271)
-+++|++++|.|+||+|||||++.+++...+..|.|.|.+..-. .. ..+.+.+++.+|+..++...++.+++...
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~ 102 (241)
T cd03256 23 SINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSG 102 (241)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCcHHHHHHhh
Confidence 57799999999999999999999999999888898655432211 11 23455688999887777667877766532
Q ss_pred HH--------HHh------c----CCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH-------------------
Q 024152 190 DT--------LIR------S----GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS------------------- 232 (271)
Q Consensus 190 ~~--------l~~------~----~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~------------------- 232 (271)
.. +.. . .-++.+-++...... ...++ .|++|+...++++.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--~G~~qrv~la~al~~~p~llllDEPt~~LD~~~ 179 (241)
T cd03256 103 RLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQR-ADQLS--GGQQQRVAIARALMQQPKLILADEPVASLDPAS 179 (241)
T ss_pred hcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCC-cccCC--HHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence 11 000 0 000111111111111 12233 48888888888873
Q ss_pred --HHHHHHHHHHhhcCcEEEEEccccc
Q 024152 233 --QALRKLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 233 --~~~r~L~~lake~~~~Vi~~sql~~ 257 (271)
...+.|..++++.+.+||+++|...
T Consensus 180 ~~~l~~~l~~~~~~~~~tii~~tH~~~ 206 (241)
T cd03256 180 SRQVMDLLKRINREEGITVIVSLHQVD 206 (241)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 2333445555566899999999764
No 100
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.34 E-value=5.4e-12 Score=113.00 Aligned_cols=139 Identities=13% Similarity=0.154 Sum_probs=89.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC-HHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 193 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~-~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~ 193 (271)
-+++|++++|.||||+|||||++.+++...+..|.|.+.+...... ..+.+.+++.+|...++...++.+++.+...+.
T Consensus 15 ~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~ 94 (302)
T TIGR01188 15 KVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLY 94 (302)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHHHHHHHHc
Confidence 6779999999999999999999999999999999866544222112 244567899999888777788888776543221
Q ss_pred hc----------CCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHH
Q 024152 194 RS----------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSL 242 (271)
Q Consensus 194 ~~----------~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~la 242 (271)
.. .-++.+-++...... -..++ .|++|+...++++. .....|+.+.
T Consensus 95 ~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--gG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~ 171 (302)
T TIGR01188 95 GLPKDEAEERAEELLELFELGEAADRP-VGTYS--GGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALK 171 (302)
T ss_pred CCCHHHHHHHHHHHHHHcCChhHhCCc-hhhCC--HHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence 00 001111111111111 12233 38888888888873 2222344433
Q ss_pred hhcCcEEEEEccccc
Q 024152 243 SLSQTILIFINQVFS 257 (271)
Q Consensus 243 ke~~~~Vi~~sql~~ 257 (271)
+.+.+||+++|...
T Consensus 172 -~~g~tvi~~sH~~~ 185 (302)
T TIGR01188 172 -EEGVTILLTTHYME 185 (302)
T ss_pred -hCCCEEEEECCCHH
Confidence 44899999999764
No 101
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.34 E-value=4.6e-12 Score=107.95 Aligned_cols=141 Identities=18% Similarity=0.156 Sum_probs=88.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC-CH-----HHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-DP-----SLAETIGVKTENLLLAQPDCGEQALSL 188 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~-~~-----~~~~~~g~~~~~~~~~~~~~~~e~~~~ 188 (271)
-+++|++++|.|+||+|||||++.|++...+..|.|.|.+..... .. .+.+.+++.+|...++...++.+++.+
T Consensus 26 ~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~ 105 (218)
T cd03255 26 SIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVEL 105 (218)
T ss_pred EEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHH
Confidence 577999999999999999999999999999999986544322111 11 123568888988777777788777655
Q ss_pred HHHHHh----------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHH
Q 024152 189 VDTLIR----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRK 237 (271)
Q Consensus 189 ~~~l~~----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~ 237 (271)
...... ..-+..+-++...... ...++ .|++|+...++++. .+.+.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~ 182 (218)
T cd03255 106 PLLLAGVPKKERRERAEELLERVGLGDRLNHY-PSELS--GGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMEL 182 (218)
T ss_pred HHhhcCCCHHHHHHHHHHHHHHcCCchhhhcC-hhhcC--HHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHH
Confidence 322110 0001111111111111 12233 38888888888772 23344
Q ss_pred HHHHHhhcCcEEEEEcccccc
Q 024152 238 LSHSLSLSQTILIFINQVFSI 258 (271)
Q Consensus 238 L~~lake~~~~Vi~~sql~~~ 258 (271)
|+.++++.+++||+++|....
T Consensus 183 l~~~~~~~~~tii~~sH~~~~ 203 (218)
T cd03255 183 LRELNKEAGTTIVVVTHDPEL 203 (218)
T ss_pred HHHHHHhcCCeEEEEECCHHH
Confidence 555555568999999997643
No 102
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.34 E-value=4.4e-12 Score=102.37 Aligned_cols=139 Identities=19% Similarity=0.213 Sum_probs=98.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCC------CCCCHHHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE------HALDPSLAETIGVKTENLLLAQPDCGEQALSL 188 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e------~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~ 188 (271)
-+++|+-++|+||+|+|||||+..+++.-.+++|.|.+++.. +.....+.+.+|++||.+.+.+.++..|+++.
T Consensus 32 ~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~l 111 (228)
T COG4181 32 VVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVAL 111 (228)
T ss_pred EecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccc
Confidence 466999999999999999999999999999999997777632 11223567789999999999998888877654
Q ss_pred HHHHHhc----------CCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHH
Q 024152 189 VDTLIRS----------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRK 237 (271)
Q Consensus 189 ~~~l~~~----------~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~ 237 (271)
...+..+ .-+..+-+-.-..++| .++++ |++||+..+|+++ ++...
T Consensus 112 PleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP-~qLSG--GEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDL 188 (228)
T COG4181 112 PLELRGESSADSRAGAKALLEAVGLGKRLTHYP-AQLSG--GEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADL 188 (228)
T ss_pred hhhhcCCccccHHHHHHHHHHHhCcccccccCc-cccCc--hHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHH
Confidence 3332210 0011111111223343 44554 8999999999983 34556
Q ss_pred HHHHHhhcCcEEEEEcccc
Q 024152 238 LSHSLSLSQTILIFINQVF 256 (271)
Q Consensus 238 L~~lake~~~~Vi~~sql~ 256 (271)
|-.+.+|.+.|.|+++|-.
T Consensus 189 lF~lnre~G~TlVlVTHD~ 207 (228)
T COG4181 189 LFALNRERGTTLVLVTHDP 207 (228)
T ss_pred HHHHhhhcCceEEEEeCCH
Confidence 6667899999999999954
No 103
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.33 E-value=1.9e-12 Score=118.35 Aligned_cols=139 Identities=17% Similarity=0.216 Sum_probs=92.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC-------CHHHHHHcCCcCCcceecCCCCHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-------DPSLAETIGVKTENLLLAQPDCGEQALS 187 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~-------~~~~~~~~g~~~~~~~~~~~~~~~e~~~ 187 (271)
-+++|++++|.||||+|||||++.|++...+++|.+.+ +.+... .+...+.+++.+|+..+++..++.+++.
T Consensus 20 ~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~-~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~ 98 (352)
T PRK11144 20 TLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVL-NGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLR 98 (352)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE-CCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHHH
Confidence 56799999999999999999999999999998898654 433211 1234567889999988888888888776
Q ss_pred HHHHHHh----cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHH
Q 024152 188 LVDTLIR----SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSL 242 (271)
Q Consensus 188 ~~~~l~~----~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~la 242 (271)
+...... ..-++.+-++.+.... ...+++ |++|+...++++. .....|++++
T Consensus 99 ~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~LSg--Gq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~ 175 (352)
T PRK11144 99 YGMAKSMVAQFDKIVALLGIEPLLDRY-PGSLSG--GEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLA 175 (352)
T ss_pred hhhhhhhHHHHHHHHHHcCCchhhhCC-cccCCH--HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 4321000 0001112122222211 133443 8888988888873 2334556666
Q ss_pred hhcCcEEEEEccccc
Q 024152 243 SLSQTILIFINQVFS 257 (271)
Q Consensus 243 ke~~~~Vi~~sql~~ 257 (271)
++.++|||+++|...
T Consensus 176 ~~~g~tii~vTHd~~ 190 (352)
T PRK11144 176 REINIPILYVSHSLD 190 (352)
T ss_pred HhcCCeEEEEecCHH
Confidence 777999999999763
No 104
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.33 E-value=4.6e-12 Score=107.59 Aligned_cols=139 Identities=17% Similarity=0.212 Sum_probs=85.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC-CHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-DPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 193 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~-~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~ 193 (271)
-+++|++++|.|+||+|||||++.+++...+..|.|.| +.+... .....+.+++.+|+...+...++.+++.......
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~-~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~ 100 (213)
T cd03259 22 TVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILI-DGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLR 100 (213)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-CCEEcCcCchhhccEEEEcCchhhccCCcHHHHHHhHHHHc
Confidence 56799999999999999999999999999899998654 432211 1123456788888876666667776654432110
Q ss_pred -------h---cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHH
Q 024152 194 -------R---SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSL 242 (271)
Q Consensus 194 -------~---~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~la 242 (271)
. ..-++.+-++...... ...++ .|++|+...++++. ...+.|..++
T Consensus 101 ~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--gG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~ 177 (213)
T cd03259 101 GVPKAEIRARVRELLELVGLEGLLNRY-PHELS--GGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQ 177 (213)
T ss_pred CCCHHHHHHHHHHHHHHcCChhhhhcC-hhhCC--HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 0 0001111111111111 12233 37888888888873 2333444445
Q ss_pred hhcCcEEEEEccccc
Q 024152 243 SLSQTILIFINQVFS 257 (271)
Q Consensus 243 ke~~~~Vi~~sql~~ 257 (271)
++.+.+||+++|...
T Consensus 178 ~~~~~tii~~sH~~~ 192 (213)
T cd03259 178 RELGITTIYVTHDQE 192 (213)
T ss_pred HHcCCEEEEEecCHH
Confidence 556899999999653
No 105
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.33 E-value=2.7e-12 Score=115.08 Aligned_cols=139 Identities=14% Similarity=0.179 Sum_probs=89.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC-CHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-DPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 193 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~-~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~ 193 (271)
-+++|++++|.||||+|||||++.+++...+++|.|.+.+.+... .....+.+|+.+|+..++...++.+++.+...+.
T Consensus 29 ~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~ 108 (306)
T PRK13537 29 HVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYF 108 (306)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHc
Confidence 677999999999999999999999999999999986554432211 1245677999999988887788888876543321
Q ss_pred hcCC----------ccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH--------------------H-HHHHHHHHH
Q 024152 194 RSGS----------VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS--------------------Q-ALRKLSHSL 242 (271)
Q Consensus 194 ~~~~----------~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~--------------------~-~~r~L~~la 242 (271)
.... ++.+-+....... -..++ .|++|+...++++. . ....|+.+
T Consensus 109 ~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l- 184 (306)
T PRK13537 109 GLSAAAARALVPPLLEFAKLENKADAK-VGELS--GGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSL- 184 (306)
T ss_pred CCCHHHHHHHHHHHHHHcCCchHhcCc-hhhCC--HHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHH-
Confidence 1000 0111111100000 11223 37888888888872 2 22233333
Q ss_pred hhcCcEEEEEccccc
Q 024152 243 SLSQTILIFINQVFS 257 (271)
Q Consensus 243 ke~~~~Vi~~sql~~ 257 (271)
++.|++|+++||...
T Consensus 185 ~~~g~till~sH~l~ 199 (306)
T PRK13537 185 LARGKTILLTTHFME 199 (306)
T ss_pred HhCCCEEEEECCCHH
Confidence 445899999999874
No 106
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.33 E-value=5.2e-12 Score=107.82 Aligned_cols=140 Identities=14% Similarity=0.156 Sum_probs=87.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC-CCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA-LDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 193 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~-~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~ 193 (271)
-+.+|++++|.|+||+|||||++.|++...+..|.|.+.+.... ....+.+.+++.+|+..++...++.+++.......
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~ 101 (220)
T cd03265 22 RVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLY 101 (220)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHHHHHHHHHc
Confidence 57799999999999999999999999998888898655432211 11234556888888877666677777665432211
Q ss_pred h----------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHH
Q 024152 194 R----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSL 242 (271)
Q Consensus 194 ~----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~la 242 (271)
. ..-+..+-++...... ...++ .|++|+...++++. .....|..++
T Consensus 102 ~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 178 (220)
T cd03265 102 GVPGAERRERIDELLDFVGLLEAADRL-VKTYS--GGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLK 178 (220)
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHhhCC-hhhCC--HHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHH
Confidence 0 0001111111111111 12233 38888888888772 2233444445
Q ss_pred hhcCcEEEEEccccc
Q 024152 243 SLSQTILIFINQVFS 257 (271)
Q Consensus 243 ke~~~~Vi~~sql~~ 257 (271)
++.+.+||+++|-..
T Consensus 179 ~~~~~tvi~~tH~~~ 193 (220)
T cd03265 179 EEFGMTILLTTHYME 193 (220)
T ss_pred HhcCCEEEEEeCCHH
Confidence 556899999999653
No 107
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.32 E-value=3e-13 Score=114.76 Aligned_cols=85 Identities=20% Similarity=0.208 Sum_probs=65.8
Q ss_pred CcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC-CCHHHHHHcC--CcCCcceecCC
Q 024152 103 GSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA-LDPSLAETIG--VKTENLLLAQP 179 (271)
Q Consensus 103 g~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~-~~~~~~~~~g--~~~~~~~~~~~ 179 (271)
|+..+|...- .+.+|++++|+||||+|||||.+.|.+.+.|+.|.|.|-+..-. ..+....+.| -.||..++++.
T Consensus 16 Gl~Al~~Vsl--~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~ 93 (250)
T COG0411 16 GLTAVNDVSL--EVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPG 93 (250)
T ss_pred CEEEEeceeE--EEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeecccccccCC
Confidence 6777787766 89999999999999999999999999999999998665443211 2223333444 46899999999
Q ss_pred CCHHHHHHHH
Q 024152 180 DCGEQALSLV 189 (271)
Q Consensus 180 ~~~~e~~~~~ 189 (271)
+++.|++..+
T Consensus 94 lTVlENv~va 103 (250)
T COG0411 94 LTVLENVAVG 103 (250)
T ss_pred CcHHHHHHHH
Confidence 9988876554
No 108
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.32 E-value=4.3e-12 Score=109.76 Aligned_cols=140 Identities=19% Similarity=0.219 Sum_probs=85.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHh
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 194 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~ 194 (271)
-+++|++++|.|+||+|||||++.+++...+..|.|.|.+.+-.......+.+++.+|+..++...++.+++.+......
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~ 103 (239)
T cd03296 24 DIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKP 103 (239)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHHHhhhhhhcc
Confidence 56799999999999999999999999999888898655432211111123457888888776666777776654321110
Q ss_pred c--------------CCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHH
Q 024152 195 S--------------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLS 239 (271)
Q Consensus 195 ~--------------~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~ 239 (271)
. .-++.+-++.+.... ...++ .|++|+...++++. .....|.
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~ 180 (239)
T cd03296 104 RSERPPEAEIRAKVHELLKLVQLDWLADRY-PAQLS--GGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLR 180 (239)
T ss_pred ccccCCHHHHHHHHHHHHHHcCChhhhhcC-hhhCC--HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence 0 001111111111111 12233 38888888888873 2233444
Q ss_pred HHHhhcCcEEEEEccccc
Q 024152 240 HSLSLSQTILIFINQVFS 257 (271)
Q Consensus 240 ~lake~~~~Vi~~sql~~ 257 (271)
.++++.+.+||+++|...
T Consensus 181 ~~~~~~~~tvii~sH~~~ 198 (239)
T cd03296 181 RLHDELHVTTVFVTHDQE 198 (239)
T ss_pred HHHHHcCCEEEEEeCCHH
Confidence 445556899999999764
No 109
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.32 E-value=5.2e-12 Score=107.10 Aligned_cols=139 Identities=19% Similarity=0.217 Sum_probs=85.9
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC-HHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 193 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~-~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~ 193 (271)
-+.+|++++|.|+||+|||||++.+++...+..|.|. ++.+.... ....+.+++.+|+...+...++.+++.+.....
T Consensus 20 ~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~-~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~ 98 (211)
T cd03298 20 TFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVL-INGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPG 98 (211)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE-ECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhcccccc
Confidence 5779999999999999999999999999998889865 44332211 123456888888877766667777654321100
Q ss_pred -------h---cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHH
Q 024152 194 -------R---SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSL 242 (271)
Q Consensus 194 -------~---~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~la 242 (271)
. ..-+..+-++...... ...++ .|++|+...++++. ...+.|.+++
T Consensus 99 ~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 175 (211)
T cd03298 99 LKLTAEDRQAIEVALARVGLAGLEKRL-PGELS--GGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLH 175 (211)
T ss_pred cCccHHHHHHHHHHHHHcCCHHHHhCC-cccCC--HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 0 0001111111111111 12233 37888888888773 2333444455
Q ss_pred hhcCcEEEEEccccc
Q 024152 243 SLSQTILIFINQVFS 257 (271)
Q Consensus 243 ke~~~~Vi~~sql~~ 257 (271)
++.+++||+++|...
T Consensus 176 ~~~~~tii~~sH~~~ 190 (211)
T cd03298 176 AETKMTVLMVTHQPE 190 (211)
T ss_pred HhcCCEEEEEecCHH
Confidence 567999999999664
No 110
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.32 E-value=3.6e-12 Score=108.47 Aligned_cols=138 Identities=17% Similarity=0.226 Sum_probs=86.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC--C----HHHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D----PSLAETIGVKTENLLLAQPDCGEQALSL 188 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~--~----~~~~~~~g~~~~~~~~~~~~~~~e~~~~ 188 (271)
-+++|++++|.|+||+|||||++.+++...+.+|.|.| +.+... . ..+.+.+++.+|+..++...++.+++.+
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~-~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~ 103 (216)
T TIGR00960 25 HITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRF-NGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAF 103 (216)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE-CCEehhhcChhHHHHHHHhceEEecCccccccccHHHHHHH
Confidence 57799999999999999999999999999888898654 433211 1 1245678999998877776788777654
Q ss_pred HHHHHh----------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHH
Q 024152 189 VDTLIR----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRK 237 (271)
Q Consensus 189 ~~~l~~----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~ 237 (271)
...... ..-++.+-++...... ...++ .|++|+...++++. .....
T Consensus 104 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--gG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~ 180 (216)
T TIGR00960 104 PLRIIGVPPRDANERVSAALEKVGLEGKAHAL-PMQLS--GGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRL 180 (216)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCChhhhhCC-hhhCC--HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHH
Confidence 321100 0001111111111111 12333 38888888888873 22333
Q ss_pred HHHHHhhcCcEEEEEccccc
Q 024152 238 LSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 238 L~~lake~~~~Vi~~sql~~ 257 (271)
|.++. +.+.+||+++|...
T Consensus 181 l~~~~-~~~~tii~vsH~~~ 199 (216)
T TIGR00960 181 FEEFN-RRGTTVLVATHDIN 199 (216)
T ss_pred HHHHH-HCCCEEEEEeCCHH
Confidence 44433 35899999999754
No 111
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.32 E-value=7.7e-12 Score=108.29 Aligned_cols=140 Identities=18% Similarity=0.184 Sum_probs=85.9
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC-CC----HHHHHHcCCcCCcceecCCCCHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA-LD----PSLAETIGVKTENLLLAQPDCGEQALSLV 189 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~-~~----~~~~~~~g~~~~~~~~~~~~~~~e~~~~~ 189 (271)
-+++|++++|.|+||+|||||++.|++...+.+|.|.+.+.... .. ..+.+.+++.+|+..++...++.+++...
T Consensus 24 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~ 103 (243)
T TIGR02315 24 NINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHG 103 (243)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhc
Confidence 56699999999999999999999999999888998655432211 11 12456789999887776666777665431
Q ss_pred HH--------HH-------h---cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH-------------------
Q 024152 190 DT--------LI-------R---SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS------------------- 232 (271)
Q Consensus 190 ~~--------l~-------~---~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~------------------- 232 (271)
.. +. . ..-+..+-++...... ...++ .|++|+...++++.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--gG~~qrv~la~al~~~p~llllDEPt~~LD~~~ 180 (243)
T TIGR02315 104 RLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQR-ADQLS--GGQQQRVAIARALAQQPDLILADEPIASLDPKT 180 (243)
T ss_pred ccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCC-cccCC--HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 10 00 0 0001111111111111 12233 38888888888873
Q ss_pred --HHHHHHHHHHhhcCcEEEEEccccc
Q 024152 233 --QALRKLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 233 --~~~r~L~~lake~~~~Vi~~sql~~ 257 (271)
.....|..++++.+++||+++|...
T Consensus 181 ~~~l~~~l~~~~~~~~~tiii~tH~~~ 207 (243)
T TIGR02315 181 SKQVMDYLKRINKEDGITVIINLHQVD 207 (243)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 2333444445566899999999764
No 112
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.32 E-value=4.8e-12 Score=107.08 Aligned_cols=138 Identities=17% Similarity=0.179 Sum_probs=84.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC-HHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 193 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~-~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~ 193 (271)
-+++|++++|.|+||+|||||++.+++...+.+|.|.+ +.+.... ..+.+.+++.+|+..++...++.+++.......
T Consensus 22 ~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~-~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~ 100 (208)
T cd03268 22 HVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITF-DGKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARLL 100 (208)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE-CCCcccchHHHHhhEEEecCCCccCccCcHHHHHHHHHHhc
Confidence 56799999999999999999999999999888998654 4332211 234556888888877666677877765432211
Q ss_pred hc------CCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHHhhcC
Q 024152 194 RS------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSLSLSQ 246 (271)
Q Consensus 194 ~~------~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~lake~~ 246 (271)
.. .-++.+-++...... -..++ .|++|+...++++. .....|.++.+ .+
T Consensus 101 ~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~ 176 (208)
T cd03268 101 GIRKKRIDEVLDVVGLKDSAKKK-VKGFS--LGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRD-QG 176 (208)
T ss_pred CCcHHHHHHHHHHcCCHHHHhhh-HhhCC--HHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CC
Confidence 00 001111111111111 11233 37777777777762 22333444343 68
Q ss_pred cEEEEEccccc
Q 024152 247 TILIFINQVFS 257 (271)
Q Consensus 247 ~~Vi~~sql~~ 257 (271)
.+||+++|-..
T Consensus 177 ~tii~~tH~~~ 187 (208)
T cd03268 177 ITVLISSHLLS 187 (208)
T ss_pred CEEEEEcCCHH
Confidence 99999999654
No 113
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.31 E-value=3.5e-12 Score=119.31 Aligned_cols=81 Identities=25% Similarity=0.236 Sum_probs=60.1
Q ss_pred CcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCC-CC-CCHHHHHHcC--CcCCcceecC
Q 024152 103 GSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE-HA-LDPSLAETIG--VKTENLLLAQ 178 (271)
Q Consensus 103 g~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e-~~-~~~~~~~~~g--~~~~~~~~~~ 178 (271)
|+..||.+.- -+.+|++++|+|.||+|||||++.+++...+++|.+ +++++ .. ..+.-+...| +.+|.+.+.+
T Consensus 20 gV~AL~~v~l--~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I-~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p 96 (500)
T COG1129 20 GVKALDGVSL--TVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEI-LIDGKPVAFSSPRDALAAGIATVHQELSLVP 96 (500)
T ss_pred Cceeecccee--EEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceE-EECCEEccCCCHHHHHhCCcEEEeechhccC
Confidence 6667776655 788999999999999999999999999999999984 45543 22 2333344444 5678777777
Q ss_pred CCCHHHHH
Q 024152 179 PDCGEQAL 186 (271)
Q Consensus 179 ~~~~~e~~ 186 (271)
.+++.|++
T Consensus 97 ~LsVaeNi 104 (500)
T COG1129 97 NLSVAENI 104 (500)
T ss_pred CccHHHHh
Confidence 77766554
No 114
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.31 E-value=4.4e-12 Score=111.24 Aligned_cols=152 Identities=16% Similarity=0.189 Sum_probs=113.4
Q ss_pred CCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC-------HHHHHHcCC
Q 024152 97 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-------PSLAETIGV 169 (271)
Q Consensus 97 ~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~-------~~~~~~~g~ 169 (271)
.+|..-|+.+.+. .++.|+|..|.|-+|||||||++++.+.+.|..|+|+ ++++.... ..+++.+++
T Consensus 37 ~tg~vvGv~~~sl-----~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~il-v~g~di~~~~~~~Lr~~Rr~~~sM 110 (386)
T COG4175 37 KTGLVVGVNDASL-----DVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEIL-VDGKDIAKLSAAELRELRRKKISM 110 (386)
T ss_pred hhCcEEeecccee-----eecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEE-ECCcchhcCCHHHHHHHHhhhhhh
Confidence 3556667766664 4669999999999999999999999999999999855 44443221 245677999
Q ss_pred cCCcceecCCCCHHHHHHHHHH----------HHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH-------
Q 024152 170 KTENLLLAQPDCGEQALSLVDT----------LIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS------- 232 (271)
Q Consensus 170 ~~~~~~~~~~~~~~e~~~~~~~----------l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~------- 232 (271)
+||++.+.+..++.++..+-.. ......+.+|-++.....+| .++++ |++||+-.+|+++
T Consensus 111 VFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp-~eLSG--GMqQRVGLARAla~~~~IlL 187 (386)
T COG4175 111 VFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYP-NELSG--GMQQRVGLARALANDPDILL 187 (386)
T ss_pred hhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCc-ccccc--hHHHHHHHHHHHccCCCEEE
Confidence 9999999999998887654211 11123456666666666664 66776 8999999999984
Q ss_pred --------------HHHHHHHHHHhhcCcEEEEEccccc
Q 024152 233 --------------QALRKLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 233 --------------~~~r~L~~lake~~~~Vi~~sql~~ 257 (271)
+.-..|.++-+++..||||+||-.+
T Consensus 188 MDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd 226 (386)
T COG4175 188 MDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLD 226 (386)
T ss_pred ecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHH
Confidence 3344778888999999999999764
No 115
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.31 E-value=4e-12 Score=115.77 Aligned_cols=140 Identities=16% Similarity=0.202 Sum_probs=90.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC-CC-H---HHHHHcCCcCCcceecCCCCHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA-LD-P---SLAETIGVKTENLLLAQPDCGEQALSLV 189 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~-~~-~---~~~~~~g~~~~~~~~~~~~~~~e~~~~~ 189 (271)
-+++|++++|.|+||+|||||++.+++...+.+|.|.|.+.+-. .. . .+.+.+++.+|+..++...++.+++.+.
T Consensus 27 ~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~ 106 (343)
T PRK11153 27 HIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALP 106 (343)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHH
Confidence 57799999999999999999999999999999998655432211 11 1 2345689999988777777888777654
Q ss_pred HHHHh-------c---CCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHH
Q 024152 190 DTLIR-------S---GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKL 238 (271)
Q Consensus 190 ~~l~~-------~---~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L 238 (271)
..... . .-++.+-++...... ...++ .|++|+...++++. .+...|
T Consensus 107 ~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-~~~LS--gGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L 183 (343)
T PRK11153 107 LELAGTPKAEIKARVTELLELVGLSDKADRY-PAQLS--GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELL 183 (343)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCchhhhCC-hhhCC--HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 32110 0 001111111111111 12333 38888888888873 334455
Q ss_pred HHHHhhcCcEEEEEccccc
Q 024152 239 SHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 239 ~~lake~~~~Vi~~sql~~ 257 (271)
+.+.++.+++||+++|...
T Consensus 184 ~~l~~~~g~tiilvtH~~~ 202 (343)
T PRK11153 184 KDINRELGLTIVLITHEMD 202 (343)
T ss_pred HHHHHhcCCEEEEEeCCHH
Confidence 5556667999999999764
No 116
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.31 E-value=4.9e-12 Score=107.37 Aligned_cols=140 Identities=15% Similarity=0.144 Sum_probs=85.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHh
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 194 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~ 194 (271)
-+++|++++|.|+||+|||||++.+++...+.+|.|.|.+..-.......+.+++.+|+..++...++.+++........
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 101 (213)
T cd03301 22 DIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRK 101 (213)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHHHHHHHhcC
Confidence 57799999999999999999999999999888898655332211111112457888888766666677776654321100
Q ss_pred -------c---CCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHHh
Q 024152 195 -------S---GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSLS 243 (271)
Q Consensus 195 -------~---~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~lak 243 (271)
+ .-++.+-++...... ...++ .|++|+...++++. .....|..+++
T Consensus 102 ~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 178 (213)
T cd03301 102 VPKDEIDERVREVAELLQIEHLLDRK-PKQLS--GGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQ 178 (213)
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHhCC-hhhCC--HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 0 001111111111111 12233 37888888887763 23334555555
Q ss_pred hcCcEEEEEccccc
Q 024152 244 LSQTILIFINQVFS 257 (271)
Q Consensus 244 e~~~~Vi~~sql~~ 257 (271)
+.+++||+++|-..
T Consensus 179 ~~~~tvi~~sH~~~ 192 (213)
T cd03301 179 RLGTTTIYVTHDQV 192 (213)
T ss_pred HcCCEEEEEeCCHH
Confidence 66899999999653
No 117
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.31 E-value=1.4e-11 Score=102.81 Aligned_cols=146 Identities=17% Similarity=0.169 Sum_probs=96.8
Q ss_pred HHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhc-----CCeEEEEcCCCCCC-----HHHHHHcCCcCCcce
Q 024152 106 ALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-----GGYCVFIDAEHALD-----PSLAETIGVKTENLL 175 (271)
Q Consensus 106 ~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~-----~g~v~~~~~e~~~~-----~~~~~~~g~~~~~~~ 175 (271)
.|..+.- .++++.+++|.||+|||||||++++....... .|.|.|.+ +.... -.+++++|+++|++.
T Consensus 22 aL~~i~l--~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g-~ni~~~~~d~~~lRr~vGMVFQkPn 98 (253)
T COG1117 22 ALKDINL--DIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDG-KNIYDPKVDVVELRRRVGMVFQKPN 98 (253)
T ss_pred hhccCce--eccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECC-eeccCCCCCHHHHHHHheeeccCCC
Confidence 4444444 89999999999999999999999998877643 36655543 33222 267899999999998
Q ss_pred ecCCCCHHHHHHHHHHHHhcCC--c---------cEEEEcchhhhcCCCccCCccchhhHHHHHHHHHH-----------
Q 024152 176 LAQPDCGEQALSLVDTLIRSGS--V---------DVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQ----------- 233 (271)
Q Consensus 176 ~~~~~~~~e~~~~~~~l~~~~~--~---------~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~----------- 233 (271)
.++ ++..|+++...++..-.+ + +.-..|.+-.......++.+.|++||...+|+++-
T Consensus 99 PFp-~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPt 177 (253)
T COG1117 99 PFP-MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPT 177 (253)
T ss_pred CCC-chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCcc
Confidence 876 888888776544321110 1 11234444433334444455589999999998842
Q ss_pred ---------HHHHHHHHHhhcCcEEEEEcccc
Q 024152 234 ---------ALRKLSHSLSLSQTILIFINQVF 256 (271)
Q Consensus 234 ---------~~r~L~~lake~~~~Vi~~sql~ 256 (271)
....|..-+| .+-|||+++|.+
T Consensus 178 SALDPIsT~kIEeLi~eLk-~~yTIviVTHnm 208 (253)
T COG1117 178 SALDPISTLKIEELITELK-KKYTIVIVTHNM 208 (253)
T ss_pred cccCchhHHHHHHHHHHHH-hccEEEEEeCCH
Confidence 2224433333 567999999976
No 118
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.31 E-value=4.2e-12 Score=107.93 Aligned_cols=139 Identities=17% Similarity=0.187 Sum_probs=86.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC-HHHHHHcCCcCCcceecCCCCHHHHHHHHHHH-
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTL- 192 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~-~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l- 192 (271)
-+.+|++++|.|+||+|||||++.+++...+.+|.|.+ +...... ..+.+.+++.+|+..++...++.+++......
T Consensus 20 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~-~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~ 98 (213)
T TIGR01277 20 NVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKV-NDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPG 98 (213)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE-CCEEcccCChhccceEEEeccCccCCCCcHHHHHHhHhhcc
Confidence 57799999999999999999999999999999998654 4332211 12345688888887777666776665432110
Q ss_pred H-----h----cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHH
Q 024152 193 I-----R----SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSL 242 (271)
Q Consensus 193 ~-----~----~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~la 242 (271)
. . ..-++.+-++.+.... ...++ .|++|+...++++. .....|..+.
T Consensus 99 ~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~ 175 (213)
T TIGR01277 99 LKLNAEQQEKVVDAAQQVGIADYLDRL-PEQLS--GGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLC 175 (213)
T ss_pred CCccHHHHHHHHHHHHHcCcHHHhhCC-cccCC--HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHH
Confidence 0 0 0001111111111111 12233 37888888888772 2333444445
Q ss_pred hhcCcEEEEEccccc
Q 024152 243 SLSQTILIFINQVFS 257 (271)
Q Consensus 243 ke~~~~Vi~~sql~~ 257 (271)
++.+.+||+++|...
T Consensus 176 ~~~~~tii~vsh~~~ 190 (213)
T TIGR01277 176 SERQRTLLMVTHHLS 190 (213)
T ss_pred HhcCCEEEEEeCCHH
Confidence 556899999999764
No 119
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.30 E-value=1.7e-11 Score=100.89 Aligned_cols=124 Identities=18% Similarity=0.273 Sum_probs=84.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC-CCHHHHHHcCCcCCcceecCCCCHHHHH-------
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA-LDPSLAETIGVKTENLLLAQPDCGEQAL------- 186 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~-~~~~~~~~~g~~~~~~~~~~~~~~~e~~------- 186 (271)
-+++|++++|.|+||+|||||++.+++...+..|.+.+.+.+.. ....+.+.+++.+|+..++...++.+++
T Consensus 22 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~~ 101 (173)
T cd03230 22 TVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGMK 101 (173)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHHHH
Confidence 46699999999999999999999999998888888654332211 1123455688888887666655665553
Q ss_pred ---HHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccc
Q 024152 187 ---SLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 187 ---~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~ 257 (271)
.+++.+. .+++++++|....-.+. .-.+.+.+.++.+ +++ +.+||+++|-..
T Consensus 102 qrv~laral~--~~p~illlDEPt~~LD~-------------~~~~~l~~~l~~~---~~~-g~tiii~th~~~ 156 (173)
T cd03230 102 QRLALAQALL--HDPELLILDEPTSGLDP-------------ESRREFWELLREL---KKE-GKTILLSSHILE 156 (173)
T ss_pred HHHHHHHHHH--cCCCEEEEeCCccCCCH-------------HHHHHHHHHHHHH---HHC-CCEEEEECCCHH
Confidence 3344443 47899999998766530 1112344444444 444 889999999653
No 120
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.30 E-value=9.9e-12 Score=106.09 Aligned_cols=139 Identities=16% Similarity=0.162 Sum_probs=87.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC--CH-H---H-HHHcCCcCCcceecCCCCHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--DP-S---L-AETIGVKTENLLLAQPDCGEQALS 187 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~--~~-~---~-~~~~g~~~~~~~~~~~~~~~e~~~ 187 (271)
-+++|++++|.|+||+|||||++.|++...+..|.+.| +.+... .. . + .+.+++.+|+..++...++.+++.
T Consensus 27 ~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~-~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~ 105 (221)
T TIGR02211 27 SIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLF-NGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVA 105 (221)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE-CCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHH
Confidence 57799999999999999999999999999999998654 432211 11 1 1 256889999877776677777665
Q ss_pred HHHHHHh----------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHH
Q 024152 188 LVDTLIR----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALR 236 (271)
Q Consensus 188 ~~~~l~~----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r 236 (271)
....... ..-++.+-++...... ...++ .|++|+...++++. ....
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~ 182 (221)
T TIGR02211 106 MPLLIGKKSVKEAKERAYEMLEKVGLEHRINHR-PSELS--GGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFD 182 (221)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCC-hhhCC--HHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHH
Confidence 4211100 0001111122111111 12233 38888888888872 2333
Q ss_pred HHHHHHhhcCcEEEEEccccc
Q 024152 237 KLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 237 ~L~~lake~~~~Vi~~sql~~ 257 (271)
.|..++++.+.+||+++|-..
T Consensus 183 ~l~~~~~~~~~tii~~tH~~~ 203 (221)
T TIGR02211 183 LMLELNRELNTSFLVVTHDLE 203 (221)
T ss_pred HHHHHHHhcCCEEEEEeCCHH
Confidence 444455567899999999764
No 121
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.30 E-value=1.1e-11 Score=102.40 Aligned_cols=125 Identities=19% Similarity=0.307 Sum_probs=83.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC-C---CHHHHHHcCCcCCcceecCCCCHHHHH----
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA-L---DPSLAETIGVKTENLLLAQPDCGEQAL---- 186 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~-~---~~~~~~~~g~~~~~~~~~~~~~~~e~~---- 186 (271)
-+++|++++|.|+||+|||||++.+++...+..|.|.+.+.+.. . ...+.+.+++.+|+..++...+..+++
T Consensus 22 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~l 101 (178)
T cd03229 22 NIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGL 101 (178)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeecC
Confidence 56699999999999999999999999998888888655432211 1 124456678888876665555555543
Q ss_pred --------HHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccc
Q 024152 187 --------SLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 187 --------~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~ 257 (271)
.+++.+. .+++++++|....-.+ . .-...+.+.++.+ +++.+.++++++|-..
T Consensus 102 S~G~~qr~~la~al~--~~p~llilDEP~~~LD---------~----~~~~~l~~~l~~~---~~~~~~tiii~sH~~~ 162 (178)
T cd03229 102 SGGQQQRVALARALA--MDPDVLLLDEPTSALD---------P----ITRREVRALLKSL---QAQLGITVVLVTHDLD 162 (178)
T ss_pred CHHHHHHHHHHHHHH--CCCCEEEEeCCcccCC---------H----HHHHHHHHHHHHH---HHhcCCEEEEEeCCHH
Confidence 2334443 4789999998765542 0 1112333444443 5555899999999653
No 122
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.30 E-value=1.5e-11 Score=103.16 Aligned_cols=122 Identities=17% Similarity=0.193 Sum_probs=82.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHH--hhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHH---
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEA--QRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLV--- 189 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~--~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~--- 189 (271)
-+++|++++|.|+||+|||||++.|++.. .+..|.|.| +.+......+.+.+++.+|+..++...+..+++.+.
T Consensus 31 ~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~-~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~ 109 (194)
T cd03213 31 KAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLI-NGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKL 109 (194)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEE-CCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHh
Confidence 56799999999999999999999999998 888888654 443322223455688888887666656766654432
Q ss_pred --------------HHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccc
Q 024152 190 --------------DTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQV 255 (271)
Q Consensus 190 --------------~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql 255 (271)
+.+. .+++++++|....-.+. .-.+.+.+.++.+ . +.+.+||+++|.
T Consensus 110 ~~LS~G~~qrv~laral~--~~p~illlDEP~~~LD~-------------~~~~~l~~~l~~~---~-~~~~tiii~sh~ 170 (194)
T cd03213 110 RGLSGGERKRVSIALELV--SNPSLLFLDEPTSGLDS-------------SSALQVMSLLRRL---A-DTGRTIICSIHQ 170 (194)
T ss_pred ccCCHHHHHHHHHHHHHH--cCCCEEEEeCCCcCCCH-------------HHHHHHHHHHHHH---H-hCCCEEEEEecC
Confidence 2222 46788888887655420 1112333444433 3 348999999996
Q ss_pred c
Q 024152 256 F 256 (271)
Q Consensus 256 ~ 256 (271)
.
T Consensus 171 ~ 171 (194)
T cd03213 171 P 171 (194)
T ss_pred c
Confidence 5
No 123
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.29 E-value=1.7e-11 Score=105.47 Aligned_cols=139 Identities=17% Similarity=0.187 Sum_probs=86.9
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC--C-H---HHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D-P---SLAETIGVKTENLLLAQPDCGEQALSL 188 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~--~-~---~~~~~~g~~~~~~~~~~~~~~~e~~~~ 188 (271)
-+++|++++|.|+||+|||||++.+++...+.+|.|.|.+ .... . . ...+.+++.+|+..++...++.+++..
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g-~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~ 105 (233)
T cd03258 27 SVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDG-TDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVAL 105 (233)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-EEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHH
Confidence 5679999999999999999999999999999999865543 3211 1 1 235668899998877766777776654
Q ss_pred HHHHHh----------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHH
Q 024152 189 VDTLIR----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRK 237 (271)
Q Consensus 189 ~~~l~~----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~ 237 (271)
...... ..-+..+-++...... ...++ .|++|+...++++. ...+.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~ 182 (233)
T cd03258 106 PLEIAGVPKAEIEERVLELLELVGLEDKADAY-PAQLS--GGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILAL 182 (233)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHCCChhhhhcC-hhhCC--HHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHH
Confidence 321100 0001111111111111 12233 37888888888773 23334
Q ss_pred HHHHHhhcCcEEEEEccccc
Q 024152 238 LSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 238 L~~lake~~~~Vi~~sql~~ 257 (271)
|..++++.+.+||+++|...
T Consensus 183 l~~~~~~~~~tvii~sH~~~ 202 (233)
T cd03258 183 LRDINRELGLTIVLITHEME 202 (233)
T ss_pred HHHHHHHcCCEEEEEeCCHH
Confidence 44445556899999999654
No 124
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.29 E-value=8.5e-12 Score=106.29 Aligned_cols=139 Identities=14% Similarity=0.176 Sum_probs=86.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC-CHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-DPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 193 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~-~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~ 193 (271)
-+++|++++|.|+||+|||||++.|++...+.+|.|.+.+..... ...+.+.+++.+|+..++...++.+++.......
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~ 106 (218)
T cd03266 27 TVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLY 106 (218)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHc
Confidence 577999999999999999999999999999999986554322111 1244567889999887777678877765432211
Q ss_pred h----------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHH
Q 024152 194 R----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSL 242 (271)
Q Consensus 194 ~----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~la 242 (271)
. ..-++.+-++...... ...++ .|++|+...++++. .....|..+
T Consensus 107 ~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~- 182 (218)
T cd03266 107 GLKGDELTARLEELADRLGMEELLDRR-VGGFS--TGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQL- 182 (218)
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHhhh-hhhcC--HHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHH-
Confidence 0 0001111111111111 12233 37888888888773 222333333
Q ss_pred hhcCcEEEEEccccc
Q 024152 243 SLSQTILIFINQVFS 257 (271)
Q Consensus 243 ke~~~~Vi~~sql~~ 257 (271)
++.+.+||+++|-..
T Consensus 183 ~~~~~tii~~tH~~~ 197 (218)
T cd03266 183 RALGKCILFSTHIMQ 197 (218)
T ss_pred HHCCCEEEEEeCCHH
Confidence 345899999999763
No 125
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.29 E-value=4.2e-12 Score=108.39 Aligned_cols=137 Identities=16% Similarity=0.151 Sum_probs=85.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHh
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 194 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~ 194 (271)
-+++|++++|.|+||+|||||++.+++...+.+|.|.| +..... ...+.+++.+|...++...++.+++.+......
T Consensus 26 ~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~-~g~~~~--~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~ 102 (220)
T cd03293 26 SVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLV-DGEPVT--GPGPDRGYVFQQDALLPWLTVLDNVALGLELQG 102 (220)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE-CCEECc--cccCcEEEEecccccccCCCHHHHHHHHHHHcC
Confidence 56799999999999999999999999998888888654 432221 123457888887766666777776654322100
Q ss_pred -------c---CCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHHh
Q 024152 195 -------S---GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSLS 243 (271)
Q Consensus 195 -------~---~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~lak 243 (271)
. .-+..+-++...... ...++ .|++|+...++++. .+...|+++.+
T Consensus 103 ~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--gG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~ 179 (220)
T cd03293 103 VPKAEARERAEELLELVGLSGFENAY-PHQLS--GGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWR 179 (220)
T ss_pred CCHHHHHHHHHHHHHHcCChhhhhCC-cccCC--HHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH
Confidence 0 001111111111111 12233 38888888888873 23334444455
Q ss_pred hcCcEEEEEccccc
Q 024152 244 LSQTILIFINQVFS 257 (271)
Q Consensus 244 e~~~~Vi~~sql~~ 257 (271)
+.+.+||+++|...
T Consensus 180 ~~~~tiii~sH~~~ 193 (220)
T cd03293 180 ETGKTVLLVTHDID 193 (220)
T ss_pred HcCCEEEEEecCHH
Confidence 67899999999764
No 126
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.29 E-value=7.6e-12 Score=113.70 Aligned_cols=139 Identities=15% Similarity=0.178 Sum_probs=89.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC-CHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-DPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 193 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~-~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~ 193 (271)
-+++|++++|.||||+|||||++.|++...++.|.|.+.+..... .....+.+|+.+|+..++...++.+++.+...+.
T Consensus 63 ~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~ 142 (340)
T PRK13536 63 TVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYF 142 (340)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHc
Confidence 567999999999999999999999999999999986655432211 2345667899999988877788888776543321
Q ss_pred hcC----------CccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHH
Q 024152 194 RSG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSL 242 (271)
Q Consensus 194 ~~~----------~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~la 242 (271)
... -+..+-++...... -..++ .|++|+...++++. .+...|.++.
T Consensus 143 ~~~~~~~~~~~~~ll~~~~L~~~~~~~-~~~LS--~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~ 219 (340)
T PRK13536 143 GMSTREIEAVIPSLLEFARLESKADAR-VSDLS--GGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLL 219 (340)
T ss_pred CCCHHHHHHHHHHHHHHcCCchhhCCC-hhhCC--HHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
Confidence 100 00111111110000 11233 37888888888873 2233344433
Q ss_pred hhcCcEEEEEccccc
Q 024152 243 SLSQTILIFINQVFS 257 (271)
Q Consensus 243 ke~~~~Vi~~sql~~ 257 (271)
+.+.+||+++|...
T Consensus 220 -~~g~tilisSH~l~ 233 (340)
T PRK13536 220 -ARGKTILLTTHFME 233 (340)
T ss_pred -hCCCEEEEECCCHH
Confidence 35899999999774
No 127
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.29 E-value=5.5e-12 Score=116.72 Aligned_cols=146 Identities=17% Similarity=0.172 Sum_probs=94.8
Q ss_pred CcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC--CH-H----HHHHcCCcCCcce
Q 024152 103 GSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--DP-S----LAETIGVKTENLL 175 (271)
Q Consensus 103 g~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~--~~-~----~~~~~g~~~~~~~ 175 (271)
++.+++. -+++|++++|.|+||+|||||++.|++...+.+|.|. ++.+... .. . +.+.++|.+|+..
T Consensus 43 ~L~~isl-----~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~-i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~ 116 (400)
T PRK10070 43 GVKDASL-----AIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVL-IDGVDIAKISDAELREVRRKKIAMVFQSFA 116 (400)
T ss_pred EEEeEEE-----EEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEE-ECCEECCcCCHHHHHHHHhCCEEEEECCCc
Confidence 4555543 5669999999999999999999999999999999855 4443221 11 1 2346899999988
Q ss_pred ecCCCCHHHHHHHHHHHHh----------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH-------------
Q 024152 176 LAQPDCGEQALSLVDTLIR----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS------------- 232 (271)
Q Consensus 176 ~~~~~~~~e~~~~~~~l~~----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~------------- 232 (271)
+++..++.+++.+...... ..-++.+-++...... ..+++ .|++|+...++++.
T Consensus 117 l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~-~~~LS--gGq~QRv~LArAL~~~P~iLLLDEPts 193 (400)
T PRK10070 117 LMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSY-PDELS--GGMRQRVGLARALAINPDILLMDEAFS 193 (400)
T ss_pred CCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcC-cccCC--HHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 8877888887765432110 0001222222221111 12344 38899999998883
Q ss_pred --------HHHHHHHHHHhhcCcEEEEEccccc
Q 024152 233 --------QALRKLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 233 --------~~~r~L~~lake~~~~Vi~~sql~~ 257 (271)
.+...|.++.++.+++||+++|...
T Consensus 194 ~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~ 226 (400)
T PRK10070 194 ALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD 226 (400)
T ss_pred cCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH
Confidence 2333455555667999999999763
No 128
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.28 E-value=9.9e-12 Score=113.66 Aligned_cols=139 Identities=18% Similarity=0.205 Sum_probs=91.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC-------CHHHHHHcCCcCCcceecCCCCHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-------DPSLAETIGVKTENLLLAQPDCGEQALS 187 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~-------~~~~~~~~g~~~~~~~~~~~~~~~e~~~ 187 (271)
-+++|++++|.||||+|||||++.|++...+++|.+.+.+ +... .....+.+++.+|+..+++..++.+++.
T Consensus 19 ~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g-~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~ 97 (354)
T TIGR02142 19 TLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNG-RTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLR 97 (354)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-EECccCccccccchhhCCeEEEecCCccCCCCcHHHHHH
Confidence 5779999999999999999999999999999999865533 2211 1133456889999888877788888776
Q ss_pred HHHHHHh--------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHH
Q 024152 188 LVDTLIR--------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKL 238 (271)
Q Consensus 188 ~~~~l~~--------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L 238 (271)
+...... ..-++.+-++.+.... ...++ .|++|+...++++. .....|
T Consensus 98 ~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-~~~LS--gGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L 174 (354)
T TIGR02142 98 YGMKRARPSERRISFERVIELLGIGHLLGRL-PGRLS--GGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYL 174 (354)
T ss_pred HHhhccChhHHHHHHHHHHHHcCChhHhcCC-hhhCC--HHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHH
Confidence 5322100 0001111122111111 12333 38899998888873 233455
Q ss_pred HHHHhhcCcEEEEEccccc
Q 024152 239 SHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 239 ~~lake~~~~Vi~~sql~~ 257 (271)
..++++.++|||+++|...
T Consensus 175 ~~l~~~~g~tiiivtH~~~ 193 (354)
T TIGR02142 175 ERLHAEFGIPILYVSHSLQ 193 (354)
T ss_pred HHHHHhcCCEEEEEecCHH
Confidence 5556667999999999764
No 129
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.28 E-value=1.3e-11 Score=116.22 Aligned_cols=149 Identities=19% Similarity=0.171 Sum_probs=101.5
Q ss_pred cHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCC--CCC--HHHHHHcCCcCCccee--c
Q 024152 104 SFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH--ALD--PSLAETIGVKTENLLL--A 177 (271)
Q Consensus 104 ~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~--~~~--~~~~~~~g~~~~~~~~--~ 177 (271)
+..+|.+.- -+.+|++++|+|++|||||||++.+++...|.+|.+.|.+.+. ... ....+.+-+.+|+... .
T Consensus 304 ~~Av~~VSf--~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLn 381 (539)
T COG1123 304 VKAVDDVSF--DLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLN 381 (539)
T ss_pred eeeeeeeee--EecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccC
Confidence 445555544 6789999999999999999999999999999999877766541 111 1334556667776533 3
Q ss_pred CCCCHHHHHHHHHHHHhc-----------CCccEEEEcc-hhhhcCCCccCCccchhhHHHHHHHH--------------
Q 024152 178 QPDCGEQALSLVDTLIRS-----------GSVDVVVVDS-VAALVPKGELDGEMGDAHMAMQARLM-------------- 231 (271)
Q Consensus 178 ~~~~~~e~~~~~~~l~~~-----------~~~~lvvID~-l~~~~~~~~l~~~~g~~~~~~~~~~l-------------- 231 (271)
+..++.+++...-..... .-+++|-++. +...+| +++++ |++||...+|++
T Consensus 382 Pr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP-~elSG--GQrQRvaIARALa~~P~lli~DEp~S 458 (539)
T COG1123 382 PRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYP-HELSG--GQRQRVAIARALALEPKLLILDEPVS 458 (539)
T ss_pred ccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCc-hhcCc--chhHHHHHHHHHhcCCCEEEecCCcc
Confidence 456777665443221100 0022333332 233342 55665 999999999998
Q ss_pred -------HHHHHHHHHHHhhcCcEEEEEccccc
Q 024152 232 -------SQALRKLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 232 -------~~~~r~L~~lake~~~~Vi~~sql~~ 257 (271)
+++++.|+.+-+|+|.+.+|+||-..
T Consensus 459 aLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~ 491 (539)
T COG1123 459 ALDVSVQAQVLNLLKDLQEELGLTYLFISHDLA 491 (539)
T ss_pred ccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH
Confidence 46778899999999999999999763
No 130
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.28 E-value=1e-11 Score=111.26 Aligned_cols=139 Identities=15% Similarity=0.169 Sum_probs=87.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC-CCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA-LDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 193 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~-~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~ 193 (271)
-+++|++++|.||||+|||||++.+++...+.+|.|.+.+.... ......+.+++.+|+..++...++.+++.......
T Consensus 26 ~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~ 105 (303)
T TIGR01288 26 TIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYF 105 (303)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHc
Confidence 57799999999999999999999999999999998665443211 11234567899999877776778877765432211
Q ss_pred hc----------CCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHH
Q 024152 194 RS----------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSL 242 (271)
Q Consensus 194 ~~----------~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~la 242 (271)
.. .-+..+-++...... -..++ .|++|+...++++. .....|.+++
T Consensus 106 ~~~~~~~~~~~~~ll~~~~l~~~~~~~-~~~LS--gG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~ 182 (303)
T TIGR01288 106 GMSTREIEAVIPSLLEFARLESKADVR-VALLS--GGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLL 182 (303)
T ss_pred CCCHHHHHHHHHHHHHHCCChhHhcCc-hhhCC--HHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence 00 001111111111111 12233 38888888888873 2233444443
Q ss_pred hhcCcEEEEEccccc
Q 024152 243 SLSQTILIFINQVFS 257 (271)
Q Consensus 243 ke~~~~Vi~~sql~~ 257 (271)
+.+.+||+++|...
T Consensus 183 -~~g~til~~sH~~~ 196 (303)
T TIGR01288 183 -ARGKTILLTTHFME 196 (303)
T ss_pred -hCCCEEEEECCCHH
Confidence 35899999999764
No 131
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.28 E-value=1.8e-11 Score=105.41 Aligned_cols=140 Identities=16% Similarity=0.195 Sum_probs=86.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC--CH-H---H-HHHcCCcCCcceecCCCCHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--DP-S---L-AETIGVKTENLLLAQPDCGEQALS 187 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~--~~-~---~-~~~~g~~~~~~~~~~~~~~~e~~~ 187 (271)
-+++|++++|.|+||+|||||++.|++...+..|.|.| +.+... .. . + .+.+++.+|+..+++..++.+++.
T Consensus 31 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~-~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~ 109 (233)
T PRK11629 31 SIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIF-NGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVA 109 (233)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-CCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHH
Confidence 56799999999999999999999999998888898554 433221 11 1 1 245888999877776678877765
Q ss_pred HHHHHH-------h---cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHH
Q 024152 188 LVDTLI-------R---SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALR 236 (271)
Q Consensus 188 ~~~~l~-------~---~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r 236 (271)
+..... . ..-++.+-++.+.... ...++ .|++|+...++++. ....
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~LS--gG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~ 186 (233)
T PRK11629 110 MPLLIGKKKPAEINSRALEMLAAVGLEHRANHR-PSELS--GGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQ 186 (233)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCC-hhhCC--HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 421110 0 0001111122111111 12233 37888888888773 2223
Q ss_pred HHHHHHhhcCcEEEEEcccccc
Q 024152 237 KLSHSLSLSQTILIFINQVFSI 258 (271)
Q Consensus 237 ~L~~lake~~~~Vi~~sql~~~ 258 (271)
.|..++++.+.+||+++|....
T Consensus 187 ~l~~~~~~~g~tvii~sH~~~~ 208 (233)
T PRK11629 187 LLGELNRLQGTAFLVVTHDLQL 208 (233)
T ss_pred HHHHHHHhCCCEEEEEeCCHHH
Confidence 4444444568999999997643
No 132
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.27 E-value=1.4e-11 Score=104.45 Aligned_cols=139 Identities=17% Similarity=0.158 Sum_probs=83.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC--CCHHHHHHcCCcCCcce-ecCCCCHHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA--LDPSLAETIGVKTENLL-LAQPDCGEQALSLVDT 191 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~--~~~~~~~~~g~~~~~~~-~~~~~~~~e~~~~~~~ 191 (271)
-+++|++++|.|+||+|||||++.|++...+..|.+.|.+.+.. ....+.+.+++.+|... .....++.+++.....
T Consensus 23 ~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~ 102 (211)
T cd03225 23 TIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLE 102 (211)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHHHHHHHHHH
Confidence 57799999999999999999999999999999998655432211 11244567888888753 2334566666543221
Q ss_pred HH-------hc---CCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHH
Q 024152 192 LI-------RS---GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSH 240 (271)
Q Consensus 192 l~-------~~---~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~ 240 (271)
.. .. .-+..+-++...... ...++ .|++|+...++++. .....|.+
T Consensus 103 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--gG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~ 179 (211)
T cd03225 103 NLGLPEEEIEERVEEALELVGLEGLRDRS-PFTLS--GGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKK 179 (211)
T ss_pred HcCCCHHHHHHHHHHHHHHcCcHhhhcCC-cccCC--HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 10 00 001111111111111 12333 38888888888873 23334444
Q ss_pred HHhhcCcEEEEEccccc
Q 024152 241 SLSLSQTILIFINQVFS 257 (271)
Q Consensus 241 lake~~~~Vi~~sql~~ 257 (271)
++++ +++||+++|...
T Consensus 180 ~~~~-~~tvi~~sH~~~ 195 (211)
T cd03225 180 LKAE-GKTIIIVTHDLD 195 (211)
T ss_pred HHHc-CCEEEEEeCCHH
Confidence 4444 899999999653
No 133
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.27 E-value=4.7e-11 Score=98.25 Aligned_cols=122 Identities=22% Similarity=0.296 Sum_probs=82.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC---CHHHHHHcCCcCCcceecCCCCHHHH------
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLLLAQPDCGEQA------ 185 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~---~~~~~~~~g~~~~~~~~~~~~~~~e~------ 185 (271)
-+++|++++|.|+||+|||||++.+++...+..|.+.| +.+... ...+.+.+++.+|+..++. .++.++
T Consensus 24 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~-~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~lLS~G~ 101 (173)
T cd03246 24 SIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRL-DGADISQWDPNELGDHVGYLPQDDELFS-GSIAENILSGGQ 101 (173)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEE-CCEEcccCCHHHHHhheEEECCCCcccc-CcHHHHCcCHHH
Confidence 46699999999999999999999999999999898554 433221 1234567888888876554 355543
Q ss_pred ---HHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccc
Q 024152 186 ---LSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 186 ---~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~ 257 (271)
+.+++.+. .+++++++|....-.+. .-.+.+.+.++.+ . +.+.+||+++|...
T Consensus 102 ~qrv~la~al~--~~p~~lllDEPt~~LD~-------------~~~~~l~~~l~~~---~-~~~~tii~~sh~~~ 157 (173)
T cd03246 102 RQRLGLARALY--GNPRILVLDEPNSHLDV-------------EGERALNQAIAAL---K-AAGATRIVIAHRPE 157 (173)
T ss_pred HHHHHHHHHHh--cCCCEEEEECCccccCH-------------HHHHHHHHHHHHH---H-hCCCEEEEEeCCHH
Confidence 33445444 47899999987765520 1112344444444 3 35899999999664
No 134
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.27 E-value=2.5e-11 Score=105.17 Aligned_cols=139 Identities=22% Similarity=0.253 Sum_probs=87.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC---CHHHHHHcCCcCCcceecCCCCHHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLLLAQPDCGEQALSLVDT 191 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~---~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~ 191 (271)
-+++|++++|.|+||+|||||++.+++...+.+|.|.| +..... ...+...+++.+|+..++...++.+++.....
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~-~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~ 101 (242)
T cd03295 23 EIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFI-DGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPK 101 (242)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE-CCeEcCcCChHHhhcceEEEccCccccCCCcHHHHHHHHHH
Confidence 57799999999999999999999999999888898654 433221 12345568888998777766788777654322
Q ss_pred HHhc----------CCccEEEEcc--hhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHH
Q 024152 192 LIRS----------GSVDVVVVDS--VAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKL 238 (271)
Q Consensus 192 l~~~----------~~~~lvvID~--l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L 238 (271)
+... .-+..+-+.. +.... ...++ .|++|+...++++. .....|
T Consensus 102 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~-~~~LS--~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L 178 (242)
T cd03295 102 LLKWPKEKIRERADELLALVGLDPAEFADRY-PHELS--GGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEF 178 (242)
T ss_pred HcCCCHHHHHHHHHHHHHHcCCCcHHHHhcC-hhhCC--HHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHH
Confidence 1100 0011111111 11110 12233 48888888888873 233344
Q ss_pred HHHHhhcCcEEEEEccccc
Q 024152 239 SHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 239 ~~lake~~~~Vi~~sql~~ 257 (271)
..++++.+.+||+++|-..
T Consensus 179 ~~~~~~~g~tvii~sH~~~ 197 (242)
T cd03295 179 KRLQQELGKTIVFVTHDID 197 (242)
T ss_pred HHHHHHcCCEEEEEecCHH
Confidence 4445556899999999663
No 135
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.27 E-value=1.8e-11 Score=107.08 Aligned_cols=137 Identities=14% Similarity=0.093 Sum_probs=85.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHH--H
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDT--L 192 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~--l 192 (271)
-+++|++++|.|+||+|||||++.|++...+.+|.|. ++.... ..+.+.+++.+|...++...++.+++.+... .
T Consensus 34 ~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~-~~g~~~--~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~ 110 (257)
T PRK11247 34 HIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELL-AGTAPL--AEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQW 110 (257)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEE-ECCEEH--HHhhCceEEEecCccCCCCCcHHHHHHhcccchH
Confidence 5679999999999999999999999999999999865 444321 1334567888888766665677776543210 0
Q ss_pred Hh--cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHHhhcCcEE
Q 024152 193 IR--SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSLSLSQTIL 249 (271)
Q Consensus 193 ~~--~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~lake~~~~V 249 (271)
.. ..-+..+-++...... ...++ .|++|+...++++. .....|.+++++.+.+|
T Consensus 111 ~~~~~~~l~~~gl~~~~~~~-~~~LS--gGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tv 187 (257)
T PRK11247 111 RDAALQALAAVGLADRANEW-PAALS--GGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTV 187 (257)
T ss_pred HHHHHHHHHHcCChhHhcCC-hhhCC--HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 00 0001111111111111 12233 37888888888772 23334455556678999
Q ss_pred EEEccccc
Q 024152 250 IFINQVFS 257 (271)
Q Consensus 250 i~~sql~~ 257 (271)
|+++|...
T Consensus 188 iivsHd~~ 195 (257)
T PRK11247 188 LLVTHDVS 195 (257)
T ss_pred EEEeCCHH
Confidence 99999764
No 136
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.27 E-value=1.8e-11 Score=105.10 Aligned_cols=139 Identities=17% Similarity=0.185 Sum_probs=85.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC--CH-----HHHHHcCCcCCcceecCCCCHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--DP-----SLAETIGVKTENLLLAQPDCGEQALS 187 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~--~~-----~~~~~~g~~~~~~~~~~~~~~~e~~~ 187 (271)
-+++|++++|.|+||+|||||++.|++...+..|.+.| +.+... .. .+.+.+++.+|+..++...++.+++.
T Consensus 32 ~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~-~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~ 110 (228)
T PRK10584 32 VVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSL-VGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVE 110 (228)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEE-CCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHH
Confidence 56699999999999999999999999999899998654 433211 11 11246888888877666667766654
Q ss_pred HHHHHH-------h---cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHH
Q 024152 188 LVDTLI-------R---SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALR 236 (271)
Q Consensus 188 ~~~~l~-------~---~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r 236 (271)
...... . ..-+..+-++...... ...++ .|++|+...++++. ....
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~ 187 (228)
T PRK10584 111 LPALLRGESSRQSRNGAKALLEQLGLGKRLDHL-PAQLS--GGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIAD 187 (228)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCC-hhhCC--HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 321110 0 0001111111111111 12233 37888888888773 2233
Q ss_pred HHHHHHhhcCcEEEEEccccc
Q 024152 237 KLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 237 ~L~~lake~~~~Vi~~sql~~ 257 (271)
.|.+++++.+.+||+++|-..
T Consensus 188 ~l~~~~~~~~~tii~~sH~~~ 208 (228)
T PRK10584 188 LLFSLNREHGTTLILVTHDLQ 208 (228)
T ss_pred HHHHHHHhcCCEEEEEecCHH
Confidence 444445667899999999764
No 137
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.27 E-value=2.4e-11 Score=98.37 Aligned_cols=154 Identities=18% Similarity=0.200 Sum_probs=95.5
Q ss_pred HHHHHHhcCCCceeeccccCCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEE
Q 024152 73 LDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVF 152 (271)
Q Consensus 73 ~~~i~~~~~~~~~~~~~~~~~~~~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~ 152 (271)
+.++.+.|+... |+.+++.- +.||++.+|+|.+|+|||||+.+|+..+.++.|.|.|
T Consensus 9 V~~lsk~Yg~~~------------------gc~~vsF~-----l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y 65 (258)
T COG4107 9 VSGLSKLYGPGK------------------GCRDVSFD-----LYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTY 65 (258)
T ss_pred ehhhhhhhCCCc------------------Ccccccee-----ecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEE
Confidence 456777777544 67776654 5599999999999999999999999999999999888
Q ss_pred EcCCCCCC-----------HHHHHHcCCcCCcceecCCCCH-------H-----------HHHHHHHHHHhcCCccEEEE
Q 024152 153 IDAEHALD-----------PSLAETIGVKTENLLLAQPDCG-------E-----------QALSLVDTLIRSGSVDVVVV 203 (271)
Q Consensus 153 ~~~e~~~~-----------~~~~~~~g~~~~~~~~~~~~~~-------~-----------e~~~~~~~l~~~~~~~lvvI 203 (271)
........ ..++..+|+..|++.-.-.+.+ | ++++.+.....+-.++.--|
T Consensus 66 ~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~Ri 145 (258)
T COG4107 66 RMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRI 145 (258)
T ss_pred EcCCCCchhHhhhchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccc
Confidence 76332211 1345568888887643322111 1 23333333333334444444
Q ss_pred cchhhhcCCCccCCccchhhHHHHHHHH---------------------HHHHHHHHHHHhhcCcEEEEEcccc
Q 024152 204 DSVAALVPKGELDGEMGDAHMAMQARLM---------------------SQALRKLSHSLSLSQTILIFINQVF 256 (271)
Q Consensus 204 D~l~~~~~~~~l~~~~g~~~~~~~~~~l---------------------~~~~r~L~~lake~~~~Vi~~sql~ 256 (271)
|.+-..+ ++ |.+|+-..++.+ +..+..+..+..+++.++++++|-.
T Consensus 146 DD~PrtF-----SG--GMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl 212 (258)
T COG4107 146 DDLPRTF-----SG--GMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDL 212 (258)
T ss_pred cCccccc-----ch--HHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechh
Confidence 4432222 21 445554444443 2233344445789999999999854
No 138
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.27 E-value=4.6e-11 Score=100.60 Aligned_cols=141 Identities=13% Similarity=0.110 Sum_probs=85.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC-C-HHHHHHcCCcCCcceecCCCCHHHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-D-PSLAETIGVKTENLLLAQPDCGEQALSLVDTL 192 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~-~-~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l 192 (271)
-+++|++++|.|+||+|||||++.|++...+..|.|. ++.+... . ..+.+.+++.++....++..++.+++......
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~-~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~ 101 (200)
T PRK13540 23 HLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEIL-FERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHF 101 (200)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEE-ECCCccccCHHHHHhheEEeccccccCcCCCHHHHHHHHHhc
Confidence 4669999999999999999999999999989999854 5544322 1 23456788888877666667777766543110
Q ss_pred Hh-----cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHHhhcC
Q 024152 193 IR-----SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSLSLSQ 246 (271)
Q Consensus 193 ~~-----~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~lake~~ 246 (271)
.. ..-++.+-+..... .+...++ .|+.++...++++. .....|..+ ++.+
T Consensus 102 ~~~~~~~~~~l~~~~l~~~~~-~~~~~LS--~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~-~~~~ 177 (200)
T PRK13540 102 SPGAVGITELCRLFSLEHLID-YPCGLLS--SGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEH-RAKG 177 (200)
T ss_pred CcchHHHHHHHHHcCCchhhh-CChhhcC--HHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHH-HHcC
Confidence 00 00000000111100 0011223 37888888888773 222233333 3458
Q ss_pred cEEEEEcccccccc
Q 024152 247 TILIFINQVFSINL 260 (271)
Q Consensus 247 ~~Vi~~sql~~~~~ 260 (271)
.+||+++|-....-
T Consensus 178 ~tiii~sh~~~~~~ 191 (200)
T PRK13540 178 GAVLLTSHQDLPLN 191 (200)
T ss_pred CEEEEEeCCchhcc
Confidence 99999999765443
No 139
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.27 E-value=2.4e-11 Score=102.56 Aligned_cols=138 Identities=14% Similarity=0.129 Sum_probs=82.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcce-ecCCCCHHHHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLL-LAQPDCGEQALSLVDTLI 193 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~-~~~~~~~~e~~~~~~~l~ 193 (271)
-+++|++++|.||||+|||||++.+++...+..|.|.+ +.+......+.+.+++.+|+.. .....++.+++.......
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~-~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~ 100 (205)
T cd03226 22 DLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILL-NGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKEL 100 (205)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-CCEEhhhHHhhcceEEEecChhhhhhhccHHHHHhhhhhhc
Confidence 56799999999999999999999999999999998654 4332222334556888888753 222356766665422111
Q ss_pred hc------CCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHH---------------------HHHHHHHHHhhcC
Q 024152 194 RS------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQ---------------------ALRKLSHSLSLSQ 246 (271)
Q Consensus 194 ~~------~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~---------------------~~r~L~~lake~~ 246 (271)
.. .-++.+-++...... ...++ .|++|+...++++.. ....|..++ +.+
T Consensus 101 ~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~ 176 (205)
T cd03226 101 DAGNEQAETVLKDLDLYALKERH-PLSLS--GGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELA-AQG 176 (205)
T ss_pred CccHHHHHHHHHHcCCchhcCCC-chhCC--HHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHH-HCC
Confidence 00 001111111111111 12233 388888888888732 222333333 358
Q ss_pred cEEEEEccccc
Q 024152 247 TILIFINQVFS 257 (271)
Q Consensus 247 ~~Vi~~sql~~ 257 (271)
.+||+++|...
T Consensus 177 ~tii~~sH~~~ 187 (205)
T cd03226 177 KAVIVITHDYE 187 (205)
T ss_pred CEEEEEeCCHH
Confidence 99999999754
No 140
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.26 E-value=5.3e-12 Score=116.09 Aligned_cols=139 Identities=17% Similarity=0.183 Sum_probs=92.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCC----CC--CC-HH----HHHHcCCcCCcceecCCCCHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE----HA--LD-PS----LAETIGVKTENLLLAQPDCGE 183 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e----~~--~~-~~----~~~~~g~~~~~~~~~~~~~~~ 183 (271)
-+++|++++|.|+||+|||||+++|++...+..|.|. ++.+ .. .. .. +.+.+++.+|+..+++..++.
T Consensus 46 ~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~-idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~ 124 (382)
T TIGR03415 46 DIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVL-VKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVE 124 (382)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEE-ECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHH
Confidence 4669999999999999999999999999999999865 4442 11 11 11 124689999998888878888
Q ss_pred HHHHHHHHHHh----------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------
Q 024152 184 QALSLVDTLIR----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS--------------------- 232 (271)
Q Consensus 184 e~~~~~~~l~~----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~--------------------- 232 (271)
+++.+...... ..-++.+-++...... ..+++ .|++|+...++++.
T Consensus 125 eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~-~~~LS--gGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~ 201 (382)
T TIGR03415 125 ENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKK-PGELS--GGMQQRVGLARAFAMDADILLMDEPFSALDPLIRT 201 (382)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCC-hhhCC--HHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHH
Confidence 88765432100 0011222222111111 12333 38889998888883
Q ss_pred HHHHHHHHHHhhcCcEEEEEccccc
Q 024152 233 QALRKLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 233 ~~~r~L~~lake~~~~Vi~~sql~~ 257 (271)
.+...|.++.++.+.|||+++|-..
T Consensus 202 ~l~~~L~~l~~~~~~TII~iTHdl~ 226 (382)
T TIGR03415 202 QLQDELLELQAKLNKTIIFVSHDLD 226 (382)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 3444566666777999999999764
No 141
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.26 E-value=1.4e-11 Score=107.23 Aligned_cols=131 Identities=15% Similarity=0.183 Sum_probs=77.0
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152 114 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 193 (271)
Q Consensus 114 GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~ 193 (271)
|-+.+|++++|.|+||+|||||++.|++...+..|.|.+ +.. .+++.+|........++.+++.......
T Consensus 20 ~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~-~g~---------~i~~~~q~~~~~~~~tv~e~l~~~~~~~ 89 (246)
T cd03237 20 GSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEI-ELD---------TVSYKPQYIKADYEGTVRDLLSSITKDF 89 (246)
T ss_pred CCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEE-CCc---------eEEEecccccCCCCCCHHHHHHHHhhhc
Confidence 368899999999999999999999999999998887554 321 3455555554434455655543221100
Q ss_pred hc------CCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHHhhcC
Q 024152 194 RS------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSLSLSQ 246 (271)
Q Consensus 194 ~~------~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~lake~~ 246 (271)
.. .-+..+-++...... ...++ .|++|+...++++. .....|++++++.+
T Consensus 90 ~~~~~~~~~~l~~l~l~~~~~~~-~~~LS--gGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 166 (246)
T cd03237 90 YTHPYFKTEIAKPLQIEQILDRE-VPELS--GGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNE 166 (246)
T ss_pred cccHHHHHHHHHHcCCHHHhhCC-hhhCC--HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 00 000011111111100 12233 26677777766662 23334555566678
Q ss_pred cEEEEEccccc
Q 024152 247 TILIFINQVFS 257 (271)
Q Consensus 247 ~~Vi~~sql~~ 257 (271)
.+||+++|...
T Consensus 167 ~tiiivsHd~~ 177 (246)
T cd03237 167 KTAFVVEHDII 177 (246)
T ss_pred CEEEEEeCCHH
Confidence 99999999763
No 142
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.26 E-value=2e-11 Score=103.47 Aligned_cols=73 Identities=22% Similarity=0.253 Sum_probs=55.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLV 189 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~ 189 (271)
-+.+|++++|.|+||+|||||++.|++...+..|.|.+ +.+... ....+.+++.+|+..++...++.+++...
T Consensus 22 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~-~g~~~~-~~~~~~i~~~~q~~~~~~~~tv~e~l~~~ 94 (210)
T cd03269 22 SVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLF-DGKPLD-IAARNRIGYLPEERGLYPKMKVIDQLVYL 94 (210)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE-CCCchh-HHHHccEEEeccCCcCCcCCcHHHHHHHH
Confidence 56799999999999999999999999998888898554 443221 23445678888887776667777766543
No 143
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.26 E-value=1.1e-11 Score=114.91 Aligned_cols=138 Identities=14% Similarity=0.159 Sum_probs=89.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC--CCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA--LDPSLAETIGVKTENLLLAQPDCGEQALSLVDTL 192 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~--~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l 192 (271)
-+++|++++|.||||+|||||++.|++...+.+|.|.+.+.... ..+.+++.+++.+|+..++...++.+++.+.+..
T Consensus 25 ~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~ 104 (402)
T PRK09536 25 SVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTP 104 (402)
T ss_pred EECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccch
Confidence 56799999999999999999999999999999998665543221 1235667789999988777777888776543211
Q ss_pred H----h----------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHH
Q 024152 193 I----R----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRK 237 (271)
Q Consensus 193 ~----~----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~ 237 (271)
. . ..-+..+-+..+.... -..++ .|++||...++++. +....
T Consensus 105 ~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~-~~~LS--gGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~l 181 (402)
T PRK09536 105 HRSRFDTWTETDRAAVERAMERTGVAQFADRP-VTSLS--GGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLEL 181 (402)
T ss_pred hcccccCCCHHHHHHHHHHHHHcCCchhhcCC-hhhCC--HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHH
Confidence 0 0 0001111111111111 12233 38888888888873 23334
Q ss_pred HHHHHhhcCcEEEEEcccc
Q 024152 238 LSHSLSLSQTILIFINQVF 256 (271)
Q Consensus 238 L~~lake~~~~Vi~~sql~ 256 (271)
|.++++ .+.+||+++|-.
T Consensus 182 L~~l~~-~g~TIIivsHdl 199 (402)
T PRK09536 182 VRRLVD-DGKTAVAAIHDL 199 (402)
T ss_pred HHHHHh-cCCEEEEEECCH
Confidence 444443 589999999965
No 144
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.26 E-value=1.2e-11 Score=106.36 Aligned_cols=142 Identities=16% Similarity=0.149 Sum_probs=86.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC--C--HHHHHHcCCcCCcceecCCCCHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D--PSLAETIGVKTENLLLAQPDCGEQALSLVD 190 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~--~--~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~ 190 (271)
-+++|++++|.|+||+|||||++.+++...+..|.|.+ +.+... . ....+.+++.+|+..+++..++.+++....
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~-~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~ 100 (230)
T TIGR03410 22 EVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRL-DGEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGL 100 (230)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEE-CCEECCCCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHH
Confidence 56799999999999999999999999999999998655 432211 1 123456888898887776668877765433
Q ss_pred HHHhcCCccE--EEEcc---hhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHHhh
Q 024152 191 TLIRSGSVDV--VVVDS---VAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSLSL 244 (271)
Q Consensus 191 ~l~~~~~~~l--vvID~---l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~lake 244 (271)
.......... -+++. +..........-+.|++|+...++++. ...+.|.+++++
T Consensus 101 ~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~ 180 (230)
T TIGR03410 101 AALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAE 180 (230)
T ss_pred HhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHc
Confidence 2211000000 00110 111111111112337888888888773 223344444444
Q ss_pred cCcEEEEEccccc
Q 024152 245 SQTILIFINQVFS 257 (271)
Q Consensus 245 ~~~~Vi~~sql~~ 257 (271)
.+.+||+++|...
T Consensus 181 ~~~tii~~sH~~~ 193 (230)
T TIGR03410 181 GGMAILLVEQYLD 193 (230)
T ss_pred CCcEEEEEeCCHH
Confidence 5899999999764
No 145
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.26 E-value=1.8e-11 Score=107.82 Aligned_cols=138 Identities=20% Similarity=0.202 Sum_probs=86.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC--CH----HHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--DP----SLAETIGVKTENLLLAQPDCGEQALSL 188 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~--~~----~~~~~~g~~~~~~~~~~~~~~~e~~~~ 188 (271)
-+++|++++|.|+||+|||||++.|++...+..|.|.| +.+... .. .+.+.+++.+|+..++...++.+++..
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~-~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~ 107 (269)
T PRK11831 29 TVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILF-DGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAY 107 (269)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE-CCEEccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHH
Confidence 56799999999999999999999999999998898655 432211 11 234568888888777766787777654
Q ss_pred HHHHHhcC-----------CccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHH
Q 024152 189 VDTLIRSG-----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALR 236 (271)
Q Consensus 189 ~~~l~~~~-----------~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r 236 (271)
........ -+..+-++...... -..++ .|++|+...++++. ....
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~LS--gGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~ 184 (269)
T PRK11831 108 PLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLM-PSELS--GGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVK 184 (269)
T ss_pred HHHHccCCCHHHHHHHHHHHHHHcCChhhhhCC-hhhCC--HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHH
Confidence 32111000 01111111111111 12333 38888888888873 2333
Q ss_pred HHHHHHhhcCcEEEEEcccc
Q 024152 237 KLSHSLSLSQTILIFINQVF 256 (271)
Q Consensus 237 ~L~~lake~~~~Vi~~sql~ 256 (271)
.|..++++.+.+||+++|..
T Consensus 185 ~l~~~~~~~g~tiiivsH~~ 204 (269)
T PRK11831 185 LISELNSALGVTCVVVSHDV 204 (269)
T ss_pred HHHHHHHhcCcEEEEEecCH
Confidence 44444555689999999974
No 146
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.26 E-value=1.9e-11 Score=103.78 Aligned_cols=137 Identities=18% Similarity=0.240 Sum_probs=84.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC--C----HHHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D----PSLAETIGVKTENLLLAQPDCGEQALSL 188 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~--~----~~~~~~~g~~~~~~~~~~~~~~~e~~~~ 188 (271)
-+++|++++|.|+||+|||||++.+++...+..|.|.| +.+... . ..+.+.+++.+|+..++...++.+++..
T Consensus 23 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~-~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~ 101 (214)
T cd03292 23 SISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRV-NGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAF 101 (214)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-CCEEcccCCHHHHHHHHHheEEEecCchhccCCcHHHHHHH
Confidence 56799999999999999999999999998888888654 433221 1 1245678899998777766777776654
Q ss_pred HHHHHh----------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHH
Q 024152 189 VDTLIR----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRK 237 (271)
Q Consensus 189 ~~~l~~----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~ 237 (271)
...... ..-+..+-++...... ...++ .|++|+...++++. .....
T Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~ 178 (214)
T cd03292 102 ALEVTGVPPREIRKRVPAALELVGLSHKHRAL-PAELS--GGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNL 178 (214)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCC-hhhcC--HHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHH
Confidence 322100 0001111111111111 12233 37888888888773 22233
Q ss_pred HHHHHhhcCcEEEEEcccc
Q 024152 238 LSHSLSLSQTILIFINQVF 256 (271)
Q Consensus 238 L~~lake~~~~Vi~~sql~ 256 (271)
|..+. +.+.+||+++|..
T Consensus 179 l~~~~-~~~~tiiivtH~~ 196 (214)
T cd03292 179 LKKIN-KAGTTVVVATHAK 196 (214)
T ss_pred HHHHH-HcCCEEEEEeCCH
Confidence 33333 3589999999965
No 147
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.25 E-value=3.1e-11 Score=104.04 Aligned_cols=75 Identities=19% Similarity=0.192 Sum_probs=55.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC-CC-HHH-HHHcCCcCCcceecCCCCHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA-LD-PSL-AETIGVKTENLLLAQPDCGEQALSLV 189 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~-~~-~~~-~~~~g~~~~~~~~~~~~~~~e~~~~~ 189 (271)
-+++|++++|.|+||+|||||++.+++...+..|.|.+.+..-. .. ..+ ...+++.+|+..++...++.+++...
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~ 99 (236)
T cd03219 22 SVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVA 99 (236)
T ss_pred EecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHHHHHHHH
Confidence 56799999999999999999999999999888898654332211 11 122 34578888888777777887776543
No 148
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.25 E-value=1.8e-11 Score=105.38 Aligned_cols=139 Identities=18% Similarity=0.211 Sum_probs=84.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC-HHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 193 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~-~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~ 193 (271)
.+.+|++++|.|+||+|||||++.+++...+.+|.|.| +.+.... ....+.+++.+|+..++...++.+++.......
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~-~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~ 99 (232)
T PRK10771 21 TVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTL-NGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPG 99 (232)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE-CCeecCcCChhhccEEEEecccccccCCcHHHHHhcccccc
Confidence 67799999999999999999999999999999998654 4332211 112346788888776666567666554321000
Q ss_pred -------h---cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHH
Q 024152 194 -------R---SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSL 242 (271)
Q Consensus 194 -------~---~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~la 242 (271)
. ..-++.+-++...... ...++ .|++|+...++++. ...+.|..++
T Consensus 100 ~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~ 176 (232)
T PRK10771 100 LKLNAAQREKLHAIARQMGIEDLLARL-PGQLS--GGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVC 176 (232)
T ss_pred cCCCHHHHHHHHHHHHHcCcHHHHhCC-cccCC--HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 0 0001111122111111 12233 37778877777762 2333444455
Q ss_pred hhcCcEEEEEccccc
Q 024152 243 SLSQTILIFINQVFS 257 (271)
Q Consensus 243 ke~~~~Vi~~sql~~ 257 (271)
++.+++||+++|...
T Consensus 177 ~~~~~tiii~sH~~~ 191 (232)
T PRK10771 177 QERQLTLLMVSHSLE 191 (232)
T ss_pred HhcCCEEEEEECCHH
Confidence 566899999999764
No 149
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.25 E-value=3.6e-11 Score=103.80 Aligned_cols=140 Identities=16% Similarity=0.111 Sum_probs=85.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC-CCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA-LDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 193 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~-~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~ 193 (271)
-+.+|++++|.|+||+|||||++.|++...+.+|.|.+.+.+.. ......+.+++.+|+...+...++.+++.......
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~ 102 (236)
T TIGR03864 23 TVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALH 102 (236)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhc
Confidence 57799999999999999999999999999999998655332211 11222346888888866655567766654432110
Q ss_pred h-------c---CCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHH
Q 024152 194 R-------S---GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSL 242 (271)
Q Consensus 194 ~-------~---~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~la 242 (271)
. . .-++.+-++...... ...+ +.|++|+...++++. ...+.|..++
T Consensus 103 ~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~L--S~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 179 (236)
T TIGR03864 103 GLSRAEARERIAALLARLGLAERADDK-VREL--NGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALC 179 (236)
T ss_pred CCCHHHHHHHHHHHHHHcCChhhhcCC-hhhC--CHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHH
Confidence 0 0 000111111110000 1123 337888888888773 2334455555
Q ss_pred hhcCcEEEEEccccc
Q 024152 243 SLSQTILIFINQVFS 257 (271)
Q Consensus 243 ke~~~~Vi~~sql~~ 257 (271)
++.+.+||+++|...
T Consensus 180 ~~~~~tiii~sH~~~ 194 (236)
T TIGR03864 180 RDQGLSVLWATHLVD 194 (236)
T ss_pred HhCCCEEEEEecChh
Confidence 556899999999764
No 150
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.25 E-value=9.6e-12 Score=110.15 Aligned_cols=139 Identities=14% Similarity=0.123 Sum_probs=87.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC---CHHHHHHcCCcCCcce-ecCCCCHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLL-LAQPDCGEQALSLVD 190 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~---~~~~~~~~g~~~~~~~-~~~~~~~~e~~~~~~ 190 (271)
-+++|++++|.|+||+|||||++.+++...+..|.|.+ +..... ...+.+.+++.+|+.. .+...++.+++.+..
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~-~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~ 107 (279)
T PRK13650 29 HVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIII-DGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGL 107 (279)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE-CCEECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhH
Confidence 57799999999999999999999999999999998554 443221 1245567899999863 344457776665432
Q ss_pred HHH--------h--cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHH
Q 024152 191 TLI--------R--SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLS 239 (271)
Q Consensus 191 ~l~--------~--~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~ 239 (271)
... . ..-++.+-++...... ...++ .|++|+...++++. .+...|.
T Consensus 108 ~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-~~~LS--gGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~ 184 (279)
T PRK13650 108 ENKGIPHEEMKERVNEALELVGMQDFKERE-PARLS--GGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIK 184 (279)
T ss_pred HhCCCCHHHHHHHHHHHHHHCCCHhHhhCC-cccCC--HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHH
Confidence 110 0 0001111112111111 12233 37888888888873 3344555
Q ss_pred HHHhhcCcEEEEEccccc
Q 024152 240 HSLSLSQTILIFINQVFS 257 (271)
Q Consensus 240 ~lake~~~~Vi~~sql~~ 257 (271)
.++++.+.|||+++|...
T Consensus 185 ~l~~~~g~tilivtH~~~ 202 (279)
T PRK13650 185 GIRDDYQMTVISITHDLD 202 (279)
T ss_pred HHHHhcCCEEEEEecCHH
Confidence 556667999999999764
No 151
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.25 E-value=1.5e-11 Score=105.44 Aligned_cols=137 Identities=14% Similarity=0.136 Sum_probs=84.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHH-----hhcCCeEEEEcCCCCC-----CHHHHHHcCCcCCcceecCCCCHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEA-----QRQGGYCVFIDAEHAL-----DPSLAETIGVKTENLLLAQPDCGEQ 184 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~-----~~~~g~v~~~~~e~~~-----~~~~~~~~g~~~~~~~~~~~~~~~e 184 (271)
-+++|++++|.|+||+|||||++.|++.. .+..|.|.+ +.+... ...+.+.+++.+|+..++ ..++.+
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~-~g~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e 99 (227)
T cd03260 22 DIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLL-DGKDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYD 99 (227)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEE-CCEEhhhcchHHHHHHhhEEEEecCchhc-cccHHH
Confidence 56799999999999999999999999999 888888654 433211 123456688888887666 567777
Q ss_pred HHHHHHHHHh-----------cCCccEEEEcchhhhcC-CCccCCccchhhHHHHHHHHH--------------------
Q 024152 185 ALSLVDTLIR-----------SGSVDVVVVDSVAALVP-KGELDGEMGDAHMAMQARLMS-------------------- 232 (271)
Q Consensus 185 ~~~~~~~l~~-----------~~~~~lvvID~l~~~~~-~~~l~~~~g~~~~~~~~~~l~-------------------- 232 (271)
++........ ..-++.+-++....... ...++ .|++|+...++++.
T Consensus 100 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS--gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~ 177 (227)
T cd03260 100 NVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLS--GGQQQRLCLARALANEPEVLLLDEPTSALDPIST 177 (227)
T ss_pred HHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCC--HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHH
Confidence 6654322110 00011111111111110 12333 38889988888873
Q ss_pred -HHHHHHHHHHhhcCcEEEEEccccc
Q 024152 233 -QALRKLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 233 -~~~r~L~~lake~~~~Vi~~sql~~ 257 (271)
.....|.+++++ .+||+++|-..
T Consensus 178 ~~l~~~l~~~~~~--~tii~~sH~~~ 201 (227)
T cd03260 178 AKIEELIAELKKE--YTIVIVTHNMQ 201 (227)
T ss_pred HHHHHHHHHHhhC--cEEEEEeccHH
Confidence 233344444443 89999999754
No 152
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.24 E-value=2.3e-11 Score=107.67 Aligned_cols=140 Identities=14% Similarity=0.085 Sum_probs=85.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC--CCHHHHHHcCCcCCcce-ecCCCCHHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA--LDPSLAETIGVKTENLL-LAQPDCGEQALSLVDT 191 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~--~~~~~~~~~g~~~~~~~-~~~~~~~~e~~~~~~~ 191 (271)
-+++|++++|.|+||+|||||++.|++...+..|.|.|.+..-. ....+.+.+++.+|+.. .+...++.+++.+...
T Consensus 29 ~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~ 108 (279)
T PRK13635 29 SVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLE 108 (279)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHh
Confidence 57799999999999999999999999999999998665442211 11244567889988762 3334566666544221
Q ss_pred HHh----------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHH
Q 024152 192 LIR----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSH 240 (271)
Q Consensus 192 l~~----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~ 240 (271)
... ..-+..+-++...... ...++ .|++++...++++. .+...|.+
T Consensus 109 ~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-~~~LS--~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~ 185 (279)
T PRK13635 109 NIGVPREEMVERVDQALRQVGMEDFLNRE-PHRLS--GGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQ 185 (279)
T ss_pred hCCCCHHHHHHHHHHHHHHcCChhhhhCC-cccCC--HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 100 0001111111111111 12233 37777877777772 23334445
Q ss_pred HHhhcCcEEEEEccccc
Q 024152 241 SLSLSQTILIFINQVFS 257 (271)
Q Consensus 241 lake~~~~Vi~~sql~~ 257 (271)
++++.+++|++++|...
T Consensus 186 l~~~~~~tilivsH~~~ 202 (279)
T PRK13635 186 LKEQKGITVLSITHDLD 202 (279)
T ss_pred HHHcCCCEEEEEecCHH
Confidence 55666999999999764
No 153
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.24 E-value=1.7e-11 Score=107.75 Aligned_cols=139 Identities=18% Similarity=0.202 Sum_probs=85.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC---CCHHHHHHcCCcCCcceecCCCCHHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA---LDPSLAETIGVKTENLLLAQPDCGEQALSLVDT 191 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~---~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~ 191 (271)
-+.+|++++|.|+||+|||||++.+++...+.+|.|.| +++.. ....+.+.+++.+|....+...++.+++.....
T Consensus 33 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~-~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~ 111 (265)
T PRK10575 33 TFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILL-DAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRY 111 (265)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEE-CCEehhhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcc
Confidence 56799999999999999999999999999888998654 43221 112345568888887655555677666543210
Q ss_pred -HH----------h---cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHH
Q 024152 192 -LI----------R---SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALR 236 (271)
Q Consensus 192 -l~----------~---~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r 236 (271)
.. . ..-+..+-++...... ...++ .|++|+...++++. .+..
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--gG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~ 188 (265)
T PRK10575 112 PWHGALGRFGAADREKVEEAISLVGLKPLAHRL-VDSLS--GGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLA 188 (265)
T ss_pred cccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-cccCC--HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 00 0 0001111111111111 12233 38888888888872 2333
Q ss_pred HHHHHHhhcCcEEEEEccccc
Q 024152 237 KLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 237 ~L~~lake~~~~Vi~~sql~~ 257 (271)
.|..++++.+++||+++|-..
T Consensus 189 ~l~~l~~~~~~tiii~sH~~~ 209 (265)
T PRK10575 189 LVHRLSQERGLTVIAVLHDIN 209 (265)
T ss_pred HHHHHHHhcCCEEEEEeCCHH
Confidence 455555556899999999763
No 154
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.24 E-value=1.6e-11 Score=104.21 Aligned_cols=136 Identities=15% Similarity=0.176 Sum_probs=82.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceec--CCCCHHHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLA--QPDCGEQALSLVDTL 192 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~--~~~~~~e~~~~~~~l 192 (271)
-+++|++++|.|+||+|||||++.+++...+..|.|.| +..... .+.+.+++.+|+.... ...++.+++......
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~-~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~ 97 (213)
T cd03235 21 EVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRV-FGKPLE--KERKRIGYVPQRRSIDRDFPISVRDVVLMGLYG 97 (213)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEE-CCccHH--HHHhheEEeccccccccCCCCcHHHHHHhcccc
Confidence 57799999999999999999999999999899998654 433221 3455688888876542 225666665432110
Q ss_pred H-----------h---cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHH
Q 024152 193 I-----------R---SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRK 237 (271)
Q Consensus 193 ~-----------~---~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~ 237 (271)
. . ..-++.+-++...... ...++ .|++|+...++++. ...+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~ 174 (213)
T cd03235 98 HKGLFRRLSKADKAKVDEALERVGLSELADRQ-IGELS--GGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYEL 174 (213)
T ss_pred ccccccCCCHHHHHHHHHHHHHcCCHHHHhCC-cccCC--HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 0 0 0001111111111111 12333 37888888888773 23334
Q ss_pred HHHHHhhcCcEEEEEccccc
Q 024152 238 LSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 238 L~~lake~~~~Vi~~sql~~ 257 (271)
|+++++ .+.+||+++|...
T Consensus 175 l~~~~~-~~~tvi~~sH~~~ 193 (213)
T cd03235 175 LRELRR-EGMTILVVTHDLG 193 (213)
T ss_pred HHHHHh-cCCEEEEEeCCHH
Confidence 444444 6899999999754
No 155
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.24 E-value=3.5e-11 Score=102.19 Aligned_cols=73 Identities=25% Similarity=0.317 Sum_probs=55.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC--C----HHHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D----PSLAETIGVKTENLLLAQPDCGEQALSL 188 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~--~----~~~~~~~g~~~~~~~~~~~~~~~e~~~~ 188 (271)
.+++|++++|.|+||+|||||++.|++...+..|.|.+ +..... . ..+.+.+++.+|+..++...++.+++..
T Consensus 24 ~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~-~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~ 102 (214)
T TIGR02673 24 HIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRI-AGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVAL 102 (214)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE-CCEEcccCCHHHHHHHHhheEEEecChhhccCCcHHHHHHH
Confidence 57799999999999999999999999998888898654 432211 1 1245568888888776666677766554
No 156
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.24 E-value=2.2e-11 Score=102.75 Aligned_cols=73 Identities=23% Similarity=0.299 Sum_probs=55.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC---C----HHHHHHcCCcCCcceecCCCCHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---D----PSLAETIGVKTENLLLAQPDCGEQALS 187 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~---~----~~~~~~~g~~~~~~~~~~~~~~~e~~~ 187 (271)
-+++|++++|.|+||+|||||++.+++...+..|.|.| +.+... . ..+.+.+++.+|...+++..++.+++.
T Consensus 20 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~-~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~~~ 98 (206)
T TIGR03608 20 TIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYL-NGKETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLD 98 (206)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEE-CCEEccccchhhHHHHHHhCeeEEecchhhccCCcHHHHHH
Confidence 46699999999999999999999999999898898554 433311 1 123456888888877766677777665
Q ss_pred H
Q 024152 188 L 188 (271)
Q Consensus 188 ~ 188 (271)
+
T Consensus 99 ~ 99 (206)
T TIGR03608 99 L 99 (206)
T ss_pred H
Confidence 4
No 157
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.24 E-value=1.7e-11 Score=105.57 Aligned_cols=139 Identities=17% Similarity=0.207 Sum_probs=85.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC-HHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 193 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~-~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~ 193 (271)
-+++|++++|+|+||+|||||++.+++...+..|.|.+ +++.... ....+.+++.+++...+...++.+++.+.....
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~-~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~ 100 (232)
T cd03300 22 DIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILL-DGKDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLK 100 (232)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-CCEEcCcCChhhcceEEEecccccCCCCcHHHHHHHHHHhc
Confidence 46699999999999999999999999999998888654 4332211 122456788888877766667776655332110
Q ss_pred --------h--cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHH
Q 024152 194 --------R--SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSL 242 (271)
Q Consensus 194 --------~--~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~la 242 (271)
. ..-.+.+-++...... ...+ +.|++++...++++. .....|..+.
T Consensus 101 ~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~l--S~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~ 177 (232)
T cd03300 101 KLPKAEIKERVAEALDLVQLEGYANRK-PSQL--SGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQ 177 (232)
T ss_pred CCCHHHHHHHHHHHHHHcCCchhhcCC-hhhC--CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 0 0001111122111111 1223 337888888888773 2223444444
Q ss_pred hhcCcEEEEEccccc
Q 024152 243 SLSQTILIFINQVFS 257 (271)
Q Consensus 243 ke~~~~Vi~~sql~~ 257 (271)
++.+++||+++|...
T Consensus 178 ~~~~~tiii~sh~~~ 192 (232)
T cd03300 178 KELGITFVFVTHDQE 192 (232)
T ss_pred HHcCCEEEEEeCCHH
Confidence 556899999998764
No 158
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.24 E-value=1.5e-11 Score=105.00 Aligned_cols=142 Identities=18% Similarity=0.182 Sum_probs=85.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC-CCH--HHHHHcCCcCCcceecCCCCHHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA-LDP--SLAETIGVKTENLLLAQPDCGEQALSLVDT 191 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~-~~~--~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~ 191 (271)
.+++|++++|+|+||+|||||++.+++...+..|.|.+.+.... ... ...+.+++.+|...++...++.+++.....
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~ 101 (222)
T cd03224 22 TVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAY 101 (222)
T ss_pred EEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhh
Confidence 57799999999999999999999999999999998655432211 111 224458888988777766777776654322
Q ss_pred HHhcCCcc--E-EEEcch---hhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHHhh
Q 024152 192 LIRSGSVD--V-VVVDSV---AALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSLSL 244 (271)
Q Consensus 192 l~~~~~~~--l-vvID~l---~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~lake 244 (271)
........ . -+++.+ ..........-+.|++|+...++++. .....|..++ +
T Consensus 102 ~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~ 180 (222)
T cd03224 102 ARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELR-D 180 (222)
T ss_pred hcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHH-H
Confidence 11000000 0 001111 11111111112337888888888872 2333444433 3
Q ss_pred cCcEEEEEccccc
Q 024152 245 SQTILIFINQVFS 257 (271)
Q Consensus 245 ~~~~Vi~~sql~~ 257 (271)
.+.+||+++|...
T Consensus 181 ~~~tiii~sH~~~ 193 (222)
T cd03224 181 EGVTILLVEQNAR 193 (222)
T ss_pred CCCEEEEEeCCHH
Confidence 6899999999654
No 159
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.24 E-value=1.5e-11 Score=110.09 Aligned_cols=139 Identities=16% Similarity=0.215 Sum_probs=87.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC-HHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 193 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~-~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~ 193 (271)
-+++|++++|.||||+|||||++.+++...++.|.|.+.+...... ....+.+++.+|...++...++.+++.+...+.
T Consensus 24 ~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~ 103 (301)
T TIGR03522 24 EAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIY 103 (301)
T ss_pred EEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHc
Confidence 5679999999999999999999999999999999865544222111 244567899999988777778888776543321
Q ss_pred hcC----------CccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH--------------------HHHHHHHHHHh
Q 024152 194 RSG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS--------------------QALRKLSHSLS 243 (271)
Q Consensus 194 ~~~----------~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~--------------------~~~r~L~~lak 243 (271)
... -+..+-++...... -..++ .|++|+...++++. +.+..+.+..+
T Consensus 104 ~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~LS--~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~ 180 (301)
T TIGR03522 104 GMKGQLLKQRVEEMIELVGLRPEQHKK-IGQLS--KGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIG 180 (301)
T ss_pred CCCHHHHHHHHHHHHHHCCCchHhcCc-hhhCC--HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhc
Confidence 000 01111111111111 12233 37888888888773 22222222233
Q ss_pred hcCcEEEEEccccc
Q 024152 244 LSQTILIFINQVFS 257 (271)
Q Consensus 244 e~~~~Vi~~sql~~ 257 (271)
+ +.+||++||...
T Consensus 181 ~-~~tiii~sH~l~ 193 (301)
T TIGR03522 181 K-DKTIILSTHIMQ 193 (301)
T ss_pred C-CCEEEEEcCCHH
Confidence 3 689999999874
No 160
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.24 E-value=2.6e-11 Score=102.71 Aligned_cols=138 Identities=21% Similarity=0.226 Sum_probs=82.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHh
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 194 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~ 194 (271)
-+++|++++|.|+||+|||||+..+++...+..|.|.| +.+........+.+++.++........++.+++........
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~ 102 (207)
T PRK13539 24 TLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKL-DGGDIDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLG 102 (207)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE-CCEeCcchhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcC
Confidence 56799999999999999999999999998888898654 43322111245567777766555555677776554322110
Q ss_pred cCC------ccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHHhhcCc
Q 024152 195 SGS------VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSLSLSQT 247 (271)
Q Consensus 195 ~~~------~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~lake~~~ 247 (271)
... ++.+-+..+.... ...++ .|++|+...++++. .....|..++ +.+.
T Consensus 103 ~~~~~~~~~l~~~~l~~~~~~~-~~~LS--~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~~ 178 (207)
T PRK13539 103 GEELDIAAALEAVGLAPLAHLP-FGYLS--AGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHL-AQGG 178 (207)
T ss_pred CcHHHHHHHHHHcCCHHHHcCC-hhhcC--HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH-HCCC
Confidence 000 0111111111111 12233 37788887777763 2233444343 3489
Q ss_pred EEEEEccccc
Q 024152 248 ILIFINQVFS 257 (271)
Q Consensus 248 ~Vi~~sql~~ 257 (271)
+||+++|...
T Consensus 179 tiii~sH~~~ 188 (207)
T PRK13539 179 IVIAATHIPL 188 (207)
T ss_pred EEEEEeCCch
Confidence 9999999764
No 161
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=99.24 E-value=1.7e-10 Score=99.91 Aligned_cols=129 Identities=17% Similarity=0.283 Sum_probs=80.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHHhh------------cCCeEEEEcCCCCCCH--HHHHH----cCCc--CCccee--
Q 024152 119 GRVVEIYGPEASGKTTLALHVIAEAQR------------QGGYCVFIDAEHALDP--SLAET----IGVK--TENLLL-- 176 (271)
Q Consensus 119 G~li~I~G~~G~GKTtl~~~ia~~~~~------------~~g~v~~~~~e~~~~~--~~~~~----~g~~--~~~~~~-- 176 (271)
|.+.+|+|+||+|||+|+++++..++. ..++|+|++.|+.... .+... ++.. .+++..
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~~~~~~~~rl~~~~ 80 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHLEPDDAGDRLFIDS 80 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCCcCcccceEEec
Confidence 678999999999999999999987652 4568999999987653 11111 2111 111111
Q ss_pred --------cC---CCCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhc
Q 024152 177 --------AQ---PDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLS 245 (271)
Q Consensus 177 --------~~---~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~ 245 (271)
.. .....++..+.+. ....++++++||++..+....+ ... ......+..|.+++++.
T Consensus 81 g~~~~l~~~~~~~~~~~~~~~~l~~~-~~~~~~~lvviDpl~~~~~~~~-------~d~----~~~~~~~~~L~~~a~~~ 148 (239)
T cd01125 81 GRIQPISIAREGRIIVVPEFERIIEQ-LLIRRIDLVVIDPLVSFHGVSE-------NDN----GAMDAVIKALRRIAAQT 148 (239)
T ss_pred cCCCceecccCCcccccHHHHHHHHH-HHhcCCCEEEECChHHhCCCCc-------CCH----HHHHHHHHHHHHHHHHh
Confidence 11 0112233233332 2246899999999887632111 111 22334566667778899
Q ss_pred CcEEEEEccccccc
Q 024152 246 QTILIFINQVFSIN 259 (271)
Q Consensus 246 ~~~Vi~~sql~~~~ 259 (271)
+++|++++|..+..
T Consensus 149 g~avl~v~H~~K~~ 162 (239)
T cd01125 149 GAAILLVHHVRKGS 162 (239)
T ss_pred CCEEEEEeccCccc
Confidence 99999999998654
No 162
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.24 E-value=4.1e-11 Score=100.31 Aligned_cols=124 Identities=16% Similarity=0.145 Sum_probs=80.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHh--hcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQ--RQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTL 192 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~--~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l 192 (271)
-+++|++++|.|+||+|||||++.+++... +..|.+. ++.+... ..+.+.+++.+|...++...++.+++......
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~-~~g~~~~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~ 106 (192)
T cd03232 29 YVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEIL-INGRPLD-KNFQRSTGYVEQQDVHSPNLTVREALRFSALL 106 (192)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEE-ECCEehH-HHhhhceEEecccCccccCCcHHHHHHHHHHH
Confidence 567999999999999999999999998653 5677754 5443322 33455688888877666666777766542210
Q ss_pred --H-------------hcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccc
Q 024152 193 --I-------------RSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 193 --~-------------~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~ 257 (271)
. --.+++++++|....-.+. .-.+.+.+.++.+ + +.+.+||+++|...
T Consensus 107 ~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~-------------~~~~~l~~~l~~~---~-~~~~tiiivtH~~~ 169 (192)
T cd03232 107 RGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDS-------------QAAYNIVRFLKKL---A-DSGQAILCTIHQPS 169 (192)
T ss_pred hcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCH-------------HHHHHHHHHHHHH---H-HcCCEEEEEEcCCh
Confidence 0 0146788888876655420 1112233333333 3 35899999999754
No 163
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.24 E-value=1.7e-11 Score=104.18 Aligned_cols=138 Identities=21% Similarity=0.257 Sum_probs=85.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC-------CHHHHHHcCCcCCcceecCCCCHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-------DPSLAETIGVKTENLLLAQPDCGEQALS 187 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~-------~~~~~~~~g~~~~~~~~~~~~~~~e~~~ 187 (271)
-+++ ++++|.|+||+|||||++.+++...+..|.|.+ +.+... .....+.+++.+|...++...++.+++.
T Consensus 20 ~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~-~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~ 97 (214)
T cd03297 20 DLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVL-NGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLA 97 (214)
T ss_pred EEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEE-CCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHHHHH
Confidence 4669 999999999999999999999999989998654 433211 1123456888888877766677777655
Q ss_pred HHHHH-----Hh---cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHH
Q 024152 188 LVDTL-----IR---SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKL 238 (271)
Q Consensus 188 ~~~~l-----~~---~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L 238 (271)
..... .. ..-++.+-++...... ...++ .|++|+...++++. .....|
T Consensus 98 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l 174 (214)
T cd03297 98 FGLKRKRNREDRISVDELLDLLGLDHLLNRY-PAQLS--GGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPEL 174 (214)
T ss_pred HHHhhCCHHHHHHHHHHHHHHcCCHhHhhcC-cccCC--HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 32211 00 0001111111111111 12233 37888888888772 233344
Q ss_pred HHHHhhcCcEEEEEccccc
Q 024152 239 SHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 239 ~~lake~~~~Vi~~sql~~ 257 (271)
..++++.+++||+++|...
T Consensus 175 ~~~~~~~~~tiii~sH~~~ 193 (214)
T cd03297 175 KQIKKNLNIPVIFVTHDLS 193 (214)
T ss_pred HHHHHHcCcEEEEEecCHH
Confidence 4555566899999999764
No 164
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.24 E-value=3.6e-11 Score=103.48 Aligned_cols=137 Identities=17% Similarity=0.215 Sum_probs=83.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHH-HH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDT-LI 193 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~-l~ 193 (271)
-+++|++++|.|+||+|||||++.+++...+.+|.|.+ +.+..... ....++.+|...++...++.+++..... ..
T Consensus 7 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~-~g~~~~~~--~~~~~~v~q~~~l~~~~tv~e~l~~~~~~~~ 83 (230)
T TIGR01184 7 TIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVIL-EGKQITEP--GPDRMVVFQNYSLLPWLTVRENIALAVDRVL 83 (230)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE-CCEECCCC--ChhheEEecCcccCCCCCHHHHHHHHHHhcc
Confidence 46799999999999999999999999999999998655 33221111 0123677787766666777776654311 00
Q ss_pred hc-----------CCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHH
Q 024152 194 RS-----------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHS 241 (271)
Q Consensus 194 ~~-----------~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~l 241 (271)
.. .-+..+-++...... ...++ .|++|+...++++. .+.+.|.++
T Consensus 84 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--gG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~ 160 (230)
T TIGR01184 84 PDLSKSERRAIVEEHIALVGLTEAADKR-PGQLS--GGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQI 160 (230)
T ss_pred cCCCHHHHHHHHHHHHHHcCCHHHHcCC-hhhCC--HHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHH
Confidence 00 001111111111111 12233 37888888888773 233345555
Q ss_pred HhhcCcEEEEEccccc
Q 024152 242 LSLSQTILIFINQVFS 257 (271)
Q Consensus 242 ake~~~~Vi~~sql~~ 257 (271)
+++.+++||+++|-..
T Consensus 161 ~~~~~~tii~~sH~~~ 176 (230)
T TIGR01184 161 WEEHRVTVLMVTHDVD 176 (230)
T ss_pred HHhcCCEEEEEeCCHH
Confidence 5667899999999763
No 165
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.24 E-value=2.1e-11 Score=104.83 Aligned_cols=137 Identities=13% Similarity=0.152 Sum_probs=83.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC--C-HH-HHHHcCCcCCcceecCCCCHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D-PS-LAETIGVKTENLLLAQPDCGEQALSLVD 190 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~--~-~~-~~~~~g~~~~~~~~~~~~~~~e~~~~~~ 190 (271)
-+++|++++|.|+||+|||||++.+++...+.+|.|.+ +.+... . .. ..+.+++.+|...++...++.+++....
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~-~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~ 100 (232)
T cd03218 22 SVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILL-DGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVL 100 (232)
T ss_pred EecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE-CCEecccCCHhHHHhccEEEecCCccccccCcHHHHHHHHH
Confidence 56699999999999999999999999999999998554 433211 1 12 2345788888877776677777665432
Q ss_pred HHHhc----------CCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHH
Q 024152 191 TLIRS----------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLS 239 (271)
Q Consensus 191 ~l~~~----------~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~ 239 (271)
..... .-+..+-++...... ...++ .|++|+...++++. ...+.|+
T Consensus 101 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~ 177 (232)
T cd03218 101 EIRGLSKKEREEKLEELLEEFHITHLRKSK-ASSLS--GGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIK 177 (232)
T ss_pred HhcCCCHHHHHHHHHHHHHHcCChhhhhCC-hhhCC--HHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHH
Confidence 21100 001111111111111 12233 37888888888773 2223333
Q ss_pred HHHhhcCcEEEEEcccc
Q 024152 240 HSLSLSQTILIFINQVF 256 (271)
Q Consensus 240 ~lake~~~~Vi~~sql~ 256 (271)
.++ +.+.+||+++|-.
T Consensus 178 ~~~-~~~~tii~~sH~~ 193 (232)
T cd03218 178 ILK-DRGIGVLITDHNV 193 (232)
T ss_pred HHH-HCCCEEEEEeCCH
Confidence 333 4589999999965
No 166
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.24 E-value=2.9e-11 Score=102.56 Aligned_cols=73 Identities=25% Similarity=0.295 Sum_probs=55.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC-----CHHHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-----DPSLAETIGVKTENLLLAQPDCGEQALSL 188 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~-----~~~~~~~~g~~~~~~~~~~~~~~~e~~~~ 188 (271)
-+++|++++|.|+||+|||||++.+++...+..|.|.+ +..... ...+.+.+++.+|+..++...++.+++..
T Consensus 22 ~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~-~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~ 99 (213)
T cd03262 22 TVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIII-DGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITL 99 (213)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE-CCEECCccchhHHHHHhcceEEecccccCCCCcHHHHHHh
Confidence 57799999999999999999999999999999998654 332221 12345678888988777766677776644
No 167
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.23 E-value=3.4e-11 Score=105.02 Aligned_cols=74 Identities=15% Similarity=0.145 Sum_probs=54.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC-C-HHH-HHHcCCcCCcceecCCCCHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-D-PSL-AETIGVKTENLLLAQPDCGEQALSL 188 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~-~-~~~-~~~~g~~~~~~~~~~~~~~~e~~~~ 188 (271)
-+.+|++++|.|+||+|||||++.|++...+..|.|.+.+..-.. . ..+ ...+++.+|+..++...++.+++..
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~ 103 (255)
T PRK11300 27 EVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLV 103 (255)
T ss_pred EEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHH
Confidence 566999999999999999999999999999999986554322111 1 122 2235667888777766788777654
No 168
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.23 E-value=3.9e-11 Score=104.54 Aligned_cols=139 Identities=17% Similarity=0.252 Sum_probs=86.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC------------C----HHHHHHcCCcCCcceecC
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL------------D----PSLAETIGVKTENLLLAQ 178 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~------------~----~~~~~~~g~~~~~~~~~~ 178 (271)
-+++|++++|.|+||+|||||++.|++...+.+|.|.+ +.+... . ..+.+.+++.+|+..++.
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~-~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 100 (252)
T TIGR03005 22 SVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQV-EGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFP 100 (252)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE-CCEEccccccccccccccchhHHHHHhhCeEEEecCcccCC
Confidence 57799999999999999999999999999898898654 432211 0 133556888888877776
Q ss_pred CCCHHHHHHHHHHHHh-----------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------
Q 024152 179 PDCGEQALSLVDTLIR-----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS--------------- 232 (271)
Q Consensus 179 ~~~~~e~~~~~~~l~~-----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~--------------- 232 (271)
..++.+++........ ..-++.+-++.+.... ...++ .|++|+...++++.
T Consensus 101 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~LS--~G~~qrv~laral~~~p~llllDEP~~~L 177 (252)
T TIGR03005 101 HKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHM-PAQLS--GGQQQRVAIARALAMRPKVMLFDEVTSAL 177 (252)
T ss_pred CCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcC-hhhcC--HHHHHHHHHHHHHHcCCCEEEEeCCcccC
Confidence 6777776654211000 0001111112111111 12233 37888888888873
Q ss_pred ------HHHHHHHHHHhhcCcEEEEEccccc
Q 024152 233 ------QALRKLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 233 ------~~~r~L~~lake~~~~Vi~~sql~~ 257 (271)
.....|.+++++.+.+||+++|...
T Consensus 178 D~~~~~~l~~~l~~~~~~~~~tiiivsH~~~ 208 (252)
T TIGR03005 178 DPELVGEVLNVIRRLASEHDLTMLLVTHEMG 208 (252)
T ss_pred CHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH
Confidence 2333444445556899999999764
No 169
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.23 E-value=4.3e-11 Score=99.85 Aligned_cols=138 Identities=15% Similarity=0.147 Sum_probs=81.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC----CHHHHHHcCCcCCcce--ecCCCCHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL----DPSLAETIGVKTENLL--LAQPDCGEQALSL 188 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~----~~~~~~~~g~~~~~~~--~~~~~~~~e~~~~ 188 (271)
-+++|++++|.|+||+|||||++.|++...+..|.|.|.+.+... ...+.+.+++.+|+.. .+ ..++.+++.+
T Consensus 14 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-~~tv~~nl~~ 92 (190)
T TIGR01166 14 AAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF-AADVDQDVAF 92 (190)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccc-cccHHHHHHH
Confidence 577999999999999999999999999998888986554322111 1234556888888752 33 3566666544
Q ss_pred HHHHHh----------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHH
Q 024152 189 VDTLIR----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRK 237 (271)
Q Consensus 189 ~~~l~~----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~ 237 (271)
...... ..-...+-++...... ...++ .|++|+...++++. .....
T Consensus 93 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~ 169 (190)
T TIGR01166 93 GPLNLGLSEAEVERRVREALTAVGASGLRERP-THCLS--GGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAI 169 (190)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCchhhhhCC-hhhCC--HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence 211100 0001111111111111 12233 37888888888773 22223
Q ss_pred HHHHHhhcCcEEEEEccccc
Q 024152 238 LSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 238 L~~lake~~~~Vi~~sql~~ 257 (271)
|..+ ++.+++||+++|...
T Consensus 170 l~~~-~~~~~tili~sH~~~ 188 (190)
T TIGR01166 170 LRRL-RAEGMTVVISTHDVD 188 (190)
T ss_pred HHHH-HHcCCEEEEEeeccc
Confidence 3333 345899999999643
No 170
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.23 E-value=2.6e-11 Score=103.85 Aligned_cols=139 Identities=20% Similarity=0.185 Sum_probs=85.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC--C----HHHHHHcCCcCCcc--eecCCCCHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D----PSLAETIGVKTENL--LLAQPDCGEQAL 186 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~--~----~~~~~~~g~~~~~~--~~~~~~~~~e~~ 186 (271)
-+++|++++|.|+||+|||||++.+++...+..|.|.+ +.+... . ..+.+.+++.+|+. .+....++.+++
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~-~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl 105 (228)
T cd03257 27 SIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIF-DGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQI 105 (228)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE-CCEEccccchhhHHHhhccEEEEecCchhhcCCcCCHHHHH
Confidence 57799999999999999999999999999899998654 433221 1 23455688888886 344456777765
Q ss_pred HHHHHHHhc------------CCccEEEEc-chhhhcCCCccCCccchhhHHHHHHHHH---------------------
Q 024152 187 SLVDTLIRS------------GSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMS--------------------- 232 (271)
Q Consensus 187 ~~~~~l~~~------------~~~~lvvID-~l~~~~~~~~l~~~~g~~~~~~~~~~l~--------------------- 232 (271)
......... .-+..+-++ ...... ...++ .|++|+...++++.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~LS--~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~ 182 (228)
T cd03257 106 AEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRY-PHELS--GGQRQRVAIARALALNPKLLIADEPTSALDVSVQA 182 (228)
T ss_pred HHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCC-chhcC--HHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHH
Confidence 432211100 000111111 110111 12233 48888888888872
Q ss_pred HHHHHHHHHHhhcCcEEEEEccccc
Q 024152 233 QALRKLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 233 ~~~r~L~~lake~~~~Vi~~sql~~ 257 (271)
.....|.+++++.+.+||+++|...
T Consensus 183 ~l~~~l~~~~~~~~~tii~~sH~~~ 207 (228)
T cd03257 183 QILDLLKKLQEELGLTLLFITHDLG 207 (228)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 2333455555556899999999754
No 171
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.23 E-value=6.6e-11 Score=97.19 Aligned_cols=121 Identities=22% Similarity=0.305 Sum_probs=80.9
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC---CHHHHHHcCCcCCcceecCCCCHHHH------
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLLLAQPDCGEQA------ 185 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~---~~~~~~~~g~~~~~~~~~~~~~~~e~------ 185 (271)
-+++|++++|.|+||+|||||++.+++...+..|.+. ++.+... ...+.+.+++.+++..+++ .++.++
T Consensus 24 ~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~-~~g~~~~~~~~~~~~~~i~~~~~~~~~~~-~t~~e~lLS~G~ 101 (171)
T cd03228 24 TIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL-IDGVDLRDLDLESLRKNIAYVPQDPFLFS-GTIRENILSGGQ 101 (171)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEE-ECCEEhhhcCHHHHHhhEEEEcCCchhcc-chHHHHhhCHHH
Confidence 5779999999999999999999999999999889855 4443221 1234566888888765554 355443
Q ss_pred ---HHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccc
Q 024152 186 ---LSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 186 ---~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~ 257 (271)
+.+++.+. .+++++++|....-.+. .-...+.+.++.+ . + +.+|++++|-..
T Consensus 102 ~~rl~la~al~--~~p~llllDEP~~gLD~-------------~~~~~l~~~l~~~---~-~-~~tii~~sh~~~ 156 (171)
T cd03228 102 RQRIAIARALL--RDPPILILDEATSALDP-------------ETEALILEALRAL---A-K-GKTVIVIAHRLS 156 (171)
T ss_pred HHHHHHHHHHh--cCCCEEEEECCCcCCCH-------------HHHHHHHHHHHHh---c-C-CCEEEEEecCHH
Confidence 33444444 47899999987655420 1112333444433 2 2 589999999654
No 172
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.23 E-value=6.5e-11 Score=98.23 Aligned_cols=122 Identities=17% Similarity=0.184 Sum_probs=81.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC--C--HHHHHHcCCcCCcc---eecCCCCHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D--PSLAETIGVKTENL---LLAQPDCGEQALS 187 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~--~--~~~~~~~g~~~~~~---~~~~~~~~~e~~~ 187 (271)
-+++|++++|.|+||+|||||++.+++...+..|.+.+ +.+... . ..+.+.+++.+|+. .+....++.+++.
T Consensus 22 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~-~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~ 100 (182)
T cd03215 22 EVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITL-DGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIA 100 (182)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE-CCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHH
Confidence 67799999999999999999999999999999998654 433221 1 13345678888774 3444556766554
Q ss_pred H--------------HHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEc
Q 024152 188 L--------------VDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFIN 253 (271)
Q Consensus 188 ~--------------~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~s 253 (271)
. ++.+ -.+++++++|....-.+. .-.+.+.+.++.+ . +.+.++|+++
T Consensus 101 ~~~~LS~G~~qrl~la~al--~~~p~llllDEP~~~LD~-------------~~~~~l~~~l~~~---~-~~~~tiii~s 161 (182)
T cd03215 101 LSSLLSGGNQQKVVLARWL--ARDPRVLILDEPTRGVDV-------------GAKAEIYRLIREL---A-DAGKAVLLIS 161 (182)
T ss_pred HHhhcCHHHHHHHHHHHHH--ccCCCEEEECCCCcCCCH-------------HHHHHHHHHHHHH---H-HCCCEEEEEe
Confidence 3 2222 247899999987655420 1112344444444 3 3488999999
Q ss_pred ccc
Q 024152 254 QVF 256 (271)
Q Consensus 254 ql~ 256 (271)
|..
T Consensus 162 h~~ 164 (182)
T cd03215 162 SEL 164 (182)
T ss_pred CCH
Confidence 975
No 173
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.23 E-value=7.3e-11 Score=100.44 Aligned_cols=73 Identities=16% Similarity=0.117 Sum_probs=53.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSL 188 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~ 188 (271)
.+++|++++|.|+||+|||||++.+++...+..|.|.| +.+........+.+++.++...++...++.+++..
T Consensus 33 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~-~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~ 105 (214)
T PRK13543 33 HVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQI-DGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHF 105 (214)
T ss_pred EECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEE-CCEEccchhhhhceEEeecCcccccCCcHHHHHHH
Confidence 57799999999999999999999999999999998554 43322222234457788877666555566666543
No 174
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.23 E-value=4.2e-11 Score=102.69 Aligned_cols=74 Identities=19% Similarity=0.262 Sum_probs=57.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHh---hcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQ---RQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLV 189 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~---~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~ 189 (271)
-+++|++++|+|+||+|||||++.+++... +..|.|.+.+ +......+.+.+++.+|+...+...++.+++.+.
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g-~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~ 105 (226)
T cd03234 29 HVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNG-QPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYT 105 (226)
T ss_pred EEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECC-EECChHHhcccEEEeCCCCccCcCCcHHHHHHHH
Confidence 577999999999999999999999999988 7888865543 3222234456688889887777777888777654
No 175
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.23 E-value=4.5e-11 Score=101.96 Aligned_cols=74 Identities=16% Similarity=0.159 Sum_probs=56.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC-CHHHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-DPSLAETIGVKTENLLLAQPDCGEQALSL 188 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~-~~~~~~~~g~~~~~~~~~~~~~~~e~~~~ 188 (271)
-+++|++++|.|+||+|||||++.+++...+..|.|.|.+.+-.. ...+.+.+++.+|+..++...++.+++..
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~ 98 (220)
T cd03263 24 NVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRF 98 (220)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHHHHHH
Confidence 577999999999999999999999999999999986654322111 13445678899988777766777776654
No 176
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.23 E-value=5.4e-11 Score=107.66 Aligned_cols=140 Identities=19% Similarity=0.163 Sum_probs=87.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC-CC----HHHHHHcCCcCCcc--eecCCCCHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA-LD----PSLAETIGVKTENL--LLAQPDCGEQALS 187 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~-~~----~~~~~~~g~~~~~~--~~~~~~~~~e~~~ 187 (271)
-+++|++++|+|+||+|||||++.|++...+..|.|.|.+.+-. .. +.+++.+++.+|+. .+.+..++.+++.
T Consensus 37 ~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~ 116 (327)
T PRK11308 37 TLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILE 116 (327)
T ss_pred EECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHH
Confidence 56699999999999999999999999999888888665432211 11 12345688888875 3444456555443
Q ss_pred HHHHHH-----------hcCCccEEEEcc-hhhhcCCCccCCccchhhHHHHHHHHH---------------------HH
Q 024152 188 LVDTLI-----------RSGSVDVVVVDS-VAALVPKGELDGEMGDAHMAMQARLMS---------------------QA 234 (271)
Q Consensus 188 ~~~~l~-----------~~~~~~lvvID~-l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~ 234 (271)
...... ...-+..+-++. ....+ ..++++ |++||...++++. ++
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-p~~LSg--Gq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i 193 (327)
T PRK11308 117 EPLLINTSLSAAERREKALAMMAKVGLRPEHYDRY-PHMFSG--GQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQV 193 (327)
T ss_pred HHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCC-CccCCH--HHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHH
Confidence 211100 000011111221 11222 134444 8999999999883 45
Q ss_pred HHHHHHHHhhcCcEEEEEccccc
Q 024152 235 LRKLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 235 ~r~L~~lake~~~~Vi~~sql~~ 257 (271)
++.|.++.++.+.+||+++|-..
T Consensus 194 ~~lL~~l~~~~g~til~iTHdl~ 216 (327)
T PRK11308 194 LNLMMDLQQELGLSYVFISHDLS 216 (327)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHH
Confidence 55666666778999999999753
No 177
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.23 E-value=3.2e-11 Score=106.24 Aligned_cols=139 Identities=16% Similarity=0.178 Sum_probs=87.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC--CH-H----HHHHcCCcCCcceecCCCCHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--DP-S----LAETIGVKTENLLLAQPDCGEQALS 187 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~--~~-~----~~~~~g~~~~~~~~~~~~~~~e~~~ 187 (271)
-+++|++++|.|+||+|||||++.+++...+..|.+.+ +++... .. . ..+.+++.+|...++...++.+++.
T Consensus 46 ~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i-~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~ 124 (269)
T cd03294 46 DVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLI-DGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVA 124 (269)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEE-CCEEccccChhhhhhhhcCcEEEEecCcccCCCCcHHHHHH
Confidence 56699999999999999999999999999998888554 433221 11 1 2346888898877776678877765
Q ss_pred HHHHHHh-------c---CCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHH
Q 024152 188 LVDTLIR-------S---GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALR 236 (271)
Q Consensus 188 ~~~~l~~-------~---~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r 236 (271)
....... . .-++.+-++...... ...++ .|++|+...++++. .+..
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~ 201 (269)
T cd03294 125 FGLEVQGVPRAEREERAAEALELVGLEGWEHKY-PDELS--GGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQD 201 (269)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCC-cccCC--HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHH
Confidence 5322100 0 001111111111111 12333 38888888888873 2333
Q ss_pred HHHHHHhhcCcEEEEEccccc
Q 024152 237 KLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 237 ~L~~lake~~~~Vi~~sql~~ 257 (271)
.|..++++.+.+||+++|...
T Consensus 202 ~l~~~~~~~g~tiii~tH~~~ 222 (269)
T cd03294 202 ELLRLQAELQKTIVFITHDLD 222 (269)
T ss_pred HHHHHHHhcCCEEEEEeCCHH
Confidence 444445556899999999763
No 178
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.22 E-value=3.2e-11 Score=101.34 Aligned_cols=137 Identities=16% Similarity=0.107 Sum_probs=82.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC--CCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA--LDPSLAETIGVKTENLLLAQPDCGEQALSLVDTL 192 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~--~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l 192 (271)
-+.+|++++|.|+||+|||||++.+++...+..|.|. ++.+.. ....+.+.+++.++...++...++.+++......
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~-~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~ 100 (198)
T TIGR01189 22 TLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVR-WNGTALAEQRDEPHRNILYLGHLPGLKPELSALENLHFWAAI 100 (198)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEE-ECCEEcccchHHhhhheEEeccCcccccCCcHHHHHHHHHHH
Confidence 5669999999999999999999999999988888855 443321 1223445678888776665556777766543322
Q ss_pred HhcC------CccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHHhhc
Q 024152 193 IRSG------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSLSLS 245 (271)
Q Consensus 193 ~~~~------~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~lake~ 245 (271)
.... -+..+-++...... ...++ .|++++...++++. ...+.|..+ ++.
T Consensus 101 ~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~ 176 (198)
T TIGR01189 101 HGGAQRTIEDALAAVGLTGFEDLP-AAQLS--AGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAH-LAR 176 (198)
T ss_pred cCCcHHHHHHHHHHcCCHHHhcCC-hhhcC--HHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH-HhC
Confidence 1100 01111111111111 12233 37888888888773 222233333 345
Q ss_pred CcEEEEEcccc
Q 024152 246 QTILIFINQVF 256 (271)
Q Consensus 246 ~~~Vi~~sql~ 256 (271)
+.+||+++|..
T Consensus 177 ~~tii~~sH~~ 187 (198)
T TIGR01189 177 GGIVLLTTHQD 187 (198)
T ss_pred CCEEEEEEccc
Confidence 88999999965
No 179
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.22 E-value=3.4e-11 Score=104.16 Aligned_cols=138 Identities=18% Similarity=0.226 Sum_probs=84.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC----C-HHHHHHcCCcCCcceecCCCCHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL----D-PSLAETIGVKTENLLLAQPDCGEQALSLV 189 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~----~-~~~~~~~g~~~~~~~~~~~~~~~e~~~~~ 189 (271)
-+++|++++|.|+||+|||||++.+++...+.+|.|.+ +..... . ..+.+.+++.+|+..++...++.+++.+.
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~-~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~ 101 (240)
T PRK09493 23 NIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIV-DGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFG 101 (240)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE-CCEECCcCChhHHHHhhceEEEecccccCCCCcHHHHHHhH
Confidence 56799999999999999999999999999888898554 433221 1 23455688888887776667777766543
Q ss_pred HHHHhc-----------CCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHH
Q 024152 190 DTLIRS-----------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRK 237 (271)
Q Consensus 190 ~~l~~~-----------~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~ 237 (271)
...... .-+..+-++...... ...++ .|++|+...++++. ...+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~LS--~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~ 178 (240)
T PRK09493 102 PLRVRGASKEEAEKQARELLAKVGLAERAHHY-PSELS--GGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKV 178 (240)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCChHHHhcC-hhhcC--HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence 210000 001111112111111 12233 37888888888773 22223
Q ss_pred HHHHHhhcCcEEEEEccccc
Q 024152 238 LSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 238 L~~lake~~~~Vi~~sql~~ 257 (271)
|..+ ++.+.+||+++|...
T Consensus 179 l~~~-~~~~~tiii~sH~~~ 197 (240)
T PRK09493 179 MQDL-AEEGMTMVIVTHEIG 197 (240)
T ss_pred HHHH-HHcCCEEEEEeCCHH
Confidence 3333 345899999999764
No 180
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.22 E-value=3.5e-11 Score=105.23 Aligned_cols=137 Identities=18% Similarity=0.134 Sum_probs=82.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHh
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 194 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~ 194 (271)
-+++|++++|.|+||+|||||++.+++...+.+|.|.| ++..... ....+++.+|...++...++.+++........
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~-~g~~~~~--~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~ 99 (255)
T PRK11248 23 TLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITL-DGKPVEG--PGAERGVVFQNEGLLPWRNVQDNVAFGLQLAG 99 (255)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE-CCEECCC--CCCcEEEEeCCCccCCCCcHHHHHHhHHHHcC
Confidence 56799999999999999999999999999899998654 4322211 11246777887666665677766654321100
Q ss_pred ----------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHHh
Q 024152 195 ----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSLS 243 (271)
Q Consensus 195 ----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~lak 243 (271)
..-++.+-++...... ...++ .|++|+...++++. .....|..+++
T Consensus 100 ~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~LS--gGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~ 176 (255)
T PRK11248 100 VEKMQRLEIAHQMLKKVGLEGAEKRY-IWQLS--GGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQ 176 (255)
T ss_pred CCHHHHHHHHHHHHHHcCChhHhhCC-hhhCC--HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH
Confidence 0001111111111111 12233 37888888888773 22233444445
Q ss_pred hcCcEEEEEccccc
Q 024152 244 LSQTILIFINQVFS 257 (271)
Q Consensus 244 e~~~~Vi~~sql~~ 257 (271)
+.+++||+++|-..
T Consensus 177 ~~g~tviivsH~~~ 190 (255)
T PRK11248 177 ETGKQVLLITHDIE 190 (255)
T ss_pred hcCCEEEEEeCCHH
Confidence 56899999999763
No 181
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.22 E-value=2.2e-11 Score=110.32 Aligned_cols=139 Identities=17% Similarity=0.161 Sum_probs=89.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC--C-H---HHHHHcCCcCCcc--eecCCCCHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D-P---SLAETIGVKTENL--LLAQPDCGEQAL 186 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~--~-~---~~~~~~g~~~~~~--~~~~~~~~~e~~ 186 (271)
-+++|++++|+|+||+|||||++.|++...+..|.|.| +++... . . .+.+.+++.+|+. .+.+..++.+++
T Consensus 43 ~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~-~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i 121 (331)
T PRK15079 43 RLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAW-LGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEII 121 (331)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEE-CCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHH
Confidence 56799999999999999999999999999988898654 443321 1 1 2345688999986 345556777765
Q ss_pred HHHHHHH---------h---cCCccEEEEc-chhhhcCCCccCCccchhhHHHHHHHHH---------------------
Q 024152 187 SLVDTLI---------R---SGSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMS--------------------- 232 (271)
Q Consensus 187 ~~~~~l~---------~---~~~~~lvvID-~l~~~~~~~~l~~~~g~~~~~~~~~~l~--------------------- 232 (271)
....... . ..-++.+-++ .+...+ ..++++ |++|+...++++.
T Consensus 122 ~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~-p~~LSg--G~~QRv~iArAL~~~P~llilDEPts~LD~~~~~ 198 (331)
T PRK15079 122 AEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRY-PHEFSG--GQCQRIGIARALILEPKLIICDEPVSALDVSIQA 198 (331)
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCC-cccCCH--HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHH
Confidence 4321110 0 0001112121 111222 133443 8999999999883
Q ss_pred HHHHHHHHHHhhcCcEEEEEccccc
Q 024152 233 QALRKLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 233 ~~~r~L~~lake~~~~Vi~~sql~~ 257 (271)
++...|+.+.++.+.++|+++|-..
T Consensus 199 ~i~~lL~~l~~~~~~til~iTHdl~ 223 (331)
T PRK15079 199 QVVNLLQQLQREMGLSLIFIAHDLA 223 (331)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 3445566666667999999999763
No 182
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.22 E-value=5.6e-11 Score=102.85 Aligned_cols=138 Identities=17% Similarity=0.215 Sum_probs=83.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC--C--HHHHHHcCCcCCcceecCCCCHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D--PSLAETIGVKTENLLLAQPDCGEQALSLVD 190 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~--~--~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~ 190 (271)
-+++|++++|.|+||+|||||++.|++...+.+|.+.+ +.+... . ....+.+++.+|+..++...++.+++....
T Consensus 25 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~-~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~ 103 (241)
T PRK10895 25 TVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIII-DDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVL 103 (241)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE-CCEECCCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhh
Confidence 46699999999999999999999999999999998654 433221 1 123456888898877766667777654432
Q ss_pred HHHh-----------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH--------------------HHHHHHH
Q 024152 191 TLIR-----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS--------------------QALRKLS 239 (271)
Q Consensus 191 ~l~~-----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~--------------------~~~r~L~ 239 (271)
.... ..-+..+-++...... ...++ .|++|+...++++. ..+..+.
T Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l 180 (241)
T PRK10895 104 QIRDDLSAEQREDRANELMEEFHIEHLRDSM-GQSLS--GGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRII 180 (241)
T ss_pred hcccccCHHHHHHHHHHHHHHcCCHHHhhcc-hhhCC--HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 1100 0000111111111110 12233 37888888888773 2222232
Q ss_pred HHHhhcCcEEEEEcccc
Q 024152 240 HSLSLSQTILIFINQVF 256 (271)
Q Consensus 240 ~lake~~~~Vi~~sql~ 256 (271)
...++.+.+||+++|..
T Consensus 181 ~~~~~~g~tiii~sH~~ 197 (241)
T PRK10895 181 EHLRDSGLGVLITDHNV 197 (241)
T ss_pred HHHHhcCCEEEEEEcCH
Confidence 23345689999999975
No 183
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.22 E-value=4.8e-11 Score=106.13 Aligned_cols=139 Identities=16% Similarity=0.213 Sum_probs=86.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC----C-HHHHHHcCCcCCcce-ecCCCCHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL----D-PSLAETIGVKTENLL-LAQPDCGEQALSL 188 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~----~-~~~~~~~g~~~~~~~-~~~~~~~~e~~~~ 188 (271)
-+++|++++|+|+||+|||||++.+++...+..|.|.+ ++.... . ..+.+.+++.+|+.. .....++.+++.+
T Consensus 29 ~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~-~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~ 107 (287)
T PRK13637 29 EIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIII-DGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAF 107 (287)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEE-CCEECCCcCccHHHHhhceEEEecCchhccccccHHHHHHh
Confidence 57799999999999999999999999999999998554 433221 1 245667899998752 2223566666554
Q ss_pred HHHHHh----------cCCccEEEEc--chhhhcCCCccCCccchhhHHHHHHHHH---------------------HHH
Q 024152 189 VDTLIR----------SGSVDVVVVD--SVAALVPKGELDGEMGDAHMAMQARLMS---------------------QAL 235 (271)
Q Consensus 189 ~~~l~~----------~~~~~lvvID--~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~ 235 (271)
...... ..-++.+-++ .+.... ...++ .|++|+...++++. ...
T Consensus 108 ~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-~~~LS--gGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~ 184 (287)
T PRK13637 108 GPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKS-PFELS--GGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEIL 184 (287)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCC-cccCC--HHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHH
Confidence 221100 0001111111 111111 12233 38899999988883 233
Q ss_pred HHHHHHHhhcCcEEEEEccccc
Q 024152 236 RKLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 236 r~L~~lake~~~~Vi~~sql~~ 257 (271)
..|..++++.+.|||+++|-..
T Consensus 185 ~~l~~l~~~~g~tvi~vtHd~~ 206 (287)
T PRK13637 185 NKIKELHKEYNMTIILVSHSME 206 (287)
T ss_pred HHHHHHHHhcCCEEEEEeCCHH
Confidence 3444555666999999999763
No 184
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.22 E-value=3.1e-11 Score=101.96 Aligned_cols=139 Identities=17% Similarity=0.172 Sum_probs=83.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC--CHHHHHHcCCcCCcceecCCCCHHHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--DPSLAETIGVKTENLLLAQPDCGEQALSLVDTL 192 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~--~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l 192 (271)
-+++|++++|.|+||+|||||++.+++...+..|.|.| +.+... .....+.+++.++...++...++.+++......
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~ 101 (204)
T PRK13538 23 TLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLW-QGEPIRRQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRL 101 (204)
T ss_pred EECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE-CCEEcccchHHhhhheEEeCCccccCcCCcHHHHHHHHHHh
Confidence 57799999999999999999999999999999998654 433221 223445677777776666666777766543221
Q ss_pred HhcC-------CccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHHhh
Q 024152 193 IRSG-------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSLSL 244 (271)
Q Consensus 193 ~~~~-------~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~lake 244 (271)
.... -++.+-++...... ...++ .|++++...++++. ...+.|+.+. +
T Consensus 102 ~~~~~~~~~~~~l~~~gl~~~~~~~-~~~LS--~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~ 177 (204)
T PRK13538 102 HGPGDDEALWEALAQVGLAGFEDVP-VRQLS--AGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHA-E 177 (204)
T ss_pred cCccHHHHHHHHHHHcCCHHHhhCC-hhhcC--HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH-H
Confidence 1000 01111111111111 12233 37788887777773 1222333333 4
Q ss_pred cCcEEEEEcccccc
Q 024152 245 SQTILIFINQVFSI 258 (271)
Q Consensus 245 ~~~~Vi~~sql~~~ 258 (271)
.+.+||+++|....
T Consensus 178 ~~~tiii~sh~~~~ 191 (204)
T PRK13538 178 QGGMVILTTHQDLP 191 (204)
T ss_pred CCCEEEEEecChhh
Confidence 58899999997543
No 185
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.22 E-value=8.3e-11 Score=102.31 Aligned_cols=139 Identities=19% Similarity=0.193 Sum_probs=84.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC----------CHHHHHHcCCcCCcceecCCCCHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL----------DPSLAETIGVKTENLLLAQPDCGEQ 184 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~----------~~~~~~~~g~~~~~~~~~~~~~~~e 184 (271)
-+++|++++|.|+||+|||||++.+++...+..|.|.+.+.+-.. ...+.+.+++.+|+..+++..++.+
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e 104 (250)
T PRK11264 25 EVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLE 104 (250)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcccCCCCCHHH
Confidence 577999999999999999999999999988888885543321110 0234556888898877776677777
Q ss_pred HHHHHHHHHhc-----------CCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH--------------------H
Q 024152 185 ALSLVDTLIRS-----------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS--------------------Q 233 (271)
Q Consensus 185 ~~~~~~~l~~~-----------~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~--------------------~ 233 (271)
++......... .-+..+-++...... ...++ .|++|+...++++. .
T Consensus 105 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~LS--~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~ 181 (250)
T PRK11264 105 NIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSY-PRRLS--GGQQQRVAIARALAMRPEVILFDEPTSALDPELVG 181 (250)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCC-hhhCC--hHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHH
Confidence 66542211000 001111111111111 12233 38888888888873 1
Q ss_pred -HHHHHHHHHhhcCcEEEEEccccc
Q 024152 234 -ALRKLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 234 -~~r~L~~lake~~~~Vi~~sql~~ 257 (271)
....|..++ +.+.+||+++|-..
T Consensus 182 ~l~~~l~~~~-~~~~tvi~~tH~~~ 205 (250)
T PRK11264 182 EVLNTIRQLA-QEKRTMVIVTHEMS 205 (250)
T ss_pred HHHHHHHHHH-hcCCEEEEEeCCHH
Confidence 222333333 45899999999763
No 186
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.21 E-value=4.3e-11 Score=102.66 Aligned_cols=140 Identities=14% Similarity=0.144 Sum_probs=85.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC--C-HHHHHHcCCcCCcceecCCCCHHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D-PSLAETIGVKTENLLLAQPDCGEQALSLVDT 191 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~--~-~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~ 191 (271)
-+++|++++|.|+||+|||||++.|++...+..|.|.+ +.+... . ..+.+.+++.+|...+++ .++.+++.+...
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~-~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~ 106 (225)
T PRK10247 29 SLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLF-EGEDISTLKPEIYRQQVSYCAQTPTLFG-DTVYDNLIFPWQ 106 (225)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEE-CCEEcCcCCHHHHHhccEEEeccccccc-ccHHHHHHhHHh
Confidence 57799999999999999999999999998889998654 433211 1 234567888888876664 477776554221
Q ss_pred HHhcC--------CccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHH
Q 024152 192 LIRSG--------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSL 242 (271)
Q Consensus 192 l~~~~--------~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~la 242 (271)
+.... -++.+-++. .........-+.|++++...++++. .....|..+.
T Consensus 107 ~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 184 (225)
T PRK10247 107 IRNQQPDPAIFLDDLERFALPD--TILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYV 184 (225)
T ss_pred hcCCChHHHHHHHHHHHcCCCh--HHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 11000 011111110 0011111122347888888888873 2223444445
Q ss_pred hhcCcEEEEEcccccc
Q 024152 243 SLSQTILIFINQVFSI 258 (271)
Q Consensus 243 ke~~~~Vi~~sql~~~ 258 (271)
++.+.+||+++|-...
T Consensus 185 ~~~~~tvii~sh~~~~ 200 (225)
T PRK10247 185 REQNIAVLWVTHDKDE 200 (225)
T ss_pred HhcCCEEEEEECChHH
Confidence 5668999999997643
No 187
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.21 E-value=8.4e-11 Score=95.92 Aligned_cols=116 Identities=16% Similarity=0.263 Sum_probs=77.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC--C--HHHHHHcCCcCCcceecCCCCHH--HHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D--PSLAETIGVKTENLLLAQPDCGE--QALSL 188 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~--~--~~~~~~~g~~~~~~~~~~~~~~~--e~~~~ 188 (271)
-+++|++++|.|+||+|||||++.+++...+.+|.|.+ +.+... . ....+.+++.++ .+.- +-+.+
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~-~g~~~~~~~~~~~~~~~i~~~~q-------LS~G~~qrl~l 93 (163)
T cd03216 22 SVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILV-DGKEVSFASPRDARRAGIAMVYQ-------LSVGERQMVEI 93 (163)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-CCEECCcCCHHHHHhcCeEEEEe-------cCHHHHHHHHH
Confidence 57799999999999999999999999999999998554 433221 1 122334565554 4433 34455
Q ss_pred HHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccc
Q 024152 189 VDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 189 ~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~ 257 (271)
++.+. .+++++++|+...-.+ . .-.+.+.+.++.+ . +.+.+||+++|...
T Consensus 94 aral~--~~p~illlDEP~~~LD---------~----~~~~~l~~~l~~~---~-~~~~tiii~sh~~~ 143 (163)
T cd03216 94 ARALA--RNARLLILDEPTAALT---------P----AEVERLFKVIRRL---R-AQGVAVIFISHRLD 143 (163)
T ss_pred HHHHh--cCCCEEEEECCCcCCC---------H----HHHHHHHHHHHHH---H-HCCCEEEEEeCCHH
Confidence 66665 4789999998765542 0 1123344444444 3 34889999999754
No 188
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.21 E-value=3.7e-11 Score=101.27 Aligned_cols=74 Identities=19% Similarity=0.174 Sum_probs=54.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC-CCHHHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA-LDPSLAETIGVKTENLLLAQPDCGEQALSL 188 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~-~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~ 188 (271)
-+++|++++|.|+||+|||||++.+++...+.+|.|.+.+.... ....+.+.+++.+|+..+....++.+++..
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~ 96 (201)
T cd03231 22 TLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRF 96 (201)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEeccccccCCCcCHHHHHHh
Confidence 57799999999999999999999999999999998654332211 123445667888877666555666665543
No 189
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.21 E-value=6e-11 Score=99.50 Aligned_cols=72 Identities=15% Similarity=0.055 Sum_probs=51.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSL 188 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~ 188 (271)
-+++|++++|.|+||+|||||++.+++...+..|.|. ++...... ...+.+++.++...+....++.+++..
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~-~~g~~i~~-~~~~~~~~~~~~~~~~~~~tv~~~l~~ 93 (195)
T PRK13541 22 TFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIY-YKNCNINN-IAKPYCTYIGHNLGLKLEMTVFENLKF 93 (195)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE-ECCcccCh-hhhhhEEeccCCcCCCccCCHHHHHHH
Confidence 5779999999999999999999999999999999855 44432221 112346677766555555676666544
No 190
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.21 E-value=6.6e-11 Score=103.97 Aligned_cols=139 Identities=19% Similarity=0.183 Sum_probs=85.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC---CCHHHHHHcCCcCCcceecCCCCHHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA---LDPSLAETIGVKTENLLLAQPDCGEQALSLVDT 191 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~---~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~ 191 (271)
-+++|++++|+|+||+|||||++.|++...+..|.+.| +.+.. ....+...+++.+|+..++...++.+++.....
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~-~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~ 107 (265)
T PRK10253 29 EIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWL-DGEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRY 107 (265)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEE-CCEEhhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcc
Confidence 56699999999999999999999999999888898654 43321 122345568888888766655677666543210
Q ss_pred -----------HHh---cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHH
Q 024152 192 -----------LIR---SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALR 236 (271)
Q Consensus 192 -----------l~~---~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r 236 (271)
... ..-+..+-++...... -..++ .|++|+...++++. ...+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~ 184 (265)
T PRK10253 108 PHQPLFTRWRKEDEEAVTKAMQATGITHLADQS-VDTLS--GGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLE 184 (265)
T ss_pred cccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-cccCC--hHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHH
Confidence 000 0001111111111111 12233 37888888888873 2333
Q ss_pred HHHHHHhhcCcEEEEEccccc
Q 024152 237 KLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 237 ~L~~lake~~~~Vi~~sql~~ 257 (271)
.|..++++.+.+||+++|...
T Consensus 185 ~L~~l~~~~~~tiii~tH~~~ 205 (265)
T PRK10253 185 LLSELNREKGYTLAAVLHDLN 205 (265)
T ss_pred HHHHHHHhcCCEEEEEeCCHH
Confidence 444445556899999999764
No 191
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.21 E-value=3.2e-11 Score=106.55 Aligned_cols=138 Identities=14% Similarity=0.165 Sum_probs=83.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC---CHHHHHHcCCcCCcce-ecCCCCHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLL-LAQPDCGEQALSLVD 190 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~---~~~~~~~~g~~~~~~~-~~~~~~~~e~~~~~~ 190 (271)
-+++|++++|.|+||+|||||++.+++...+..|.|.| ++.... ...+.+.+++.+|+.. .....++.+++.+..
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~-~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~ 105 (274)
T PRK13647 27 SIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKV-MGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGP 105 (274)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEE-CCEECCCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhH
Confidence 56799999999999999999999999999999998654 433221 1344567899998752 223356666665422
Q ss_pred HHH--------h--cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHH
Q 024152 191 TLI--------R--SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLS 239 (271)
Q Consensus 191 ~l~--------~--~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~ 239 (271)
... . ..-+..+-+....... ...++ .|++|+...++++. .....|.
T Consensus 106 ~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-~~~LS--gG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~ 182 (274)
T PRK13647 106 VNMGLDKDEVERRVEEALKAVRMWDFRDKP-PYHLS--YGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILD 182 (274)
T ss_pred HHcCCCHHHHHHHHHHHHHHCCCHHHhcCC-hhhCC--HHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHH
Confidence 110 0 0001111111111111 12233 37888888888873 2333444
Q ss_pred HHHhhcCcEEEEEccccc
Q 024152 240 HSLSLSQTILIFINQVFS 257 (271)
Q Consensus 240 ~lake~~~~Vi~~sql~~ 257 (271)
++++ .++|||+++|...
T Consensus 183 ~~~~-~g~tili~tH~~~ 199 (274)
T PRK13647 183 RLHN-QGKTVIVATHDVD 199 (274)
T ss_pred HHHH-CCCEEEEEeCCHH
Confidence 4444 4899999999764
No 192
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.21 E-value=7.3e-11 Score=102.24 Aligned_cols=139 Identities=17% Similarity=0.144 Sum_probs=83.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC--CCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA--LDPSLAETIGVKTENLLLAQPDCGEQALSLVDTL 192 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~--~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l 192 (271)
-+++|++++|.|+||+|||||++.|++...+..|.|.+.+.+-. ....+.+.+++.+|+..++. .++.+++......
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~ 103 (241)
T PRK14250 25 KFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPML 103 (241)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhch-hhHHHHHhcchhh
Confidence 46699999999999999999999999999899998665432211 11234556888888866554 4666554432110
Q ss_pred Hh------cCCccEEEEc-chhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHHhh
Q 024152 193 IR------SGSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSLSL 244 (271)
Q Consensus 193 ~~------~~~~~lvvID-~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~lake 244 (271)
.. ..-+..+-++ .+.... ...++ .|++|+...++++. .....|..+.++
T Consensus 104 ~~~~~~~~~~~l~~~~l~~~~~~~~-~~~LS--~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 180 (241)
T PRK14250 104 KGEKNVDVEYYLSIVGLNKEYATRD-VKNLS--GGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNK 180 (241)
T ss_pred cCcHHHHHHHHHHHcCCCHHHhhCC-cccCC--HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 00 0001111111 111111 12233 38888888888773 223344444555
Q ss_pred cCcEEEEEccccc
Q 024152 245 SQTILIFINQVFS 257 (271)
Q Consensus 245 ~~~~Vi~~sql~~ 257 (271)
.+.+||+++|-..
T Consensus 181 ~g~tii~~sH~~~ 193 (241)
T PRK14250 181 MNLTVIWITHNME 193 (241)
T ss_pred CCCEEEEEeccHH
Confidence 6899999999764
No 193
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.20 E-value=4.5e-11 Score=102.81 Aligned_cols=142 Identities=16% Similarity=0.143 Sum_probs=81.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh----cCCeEEEEcCCCCCC-HHHHHHcCCcCCcce--ecCCCCHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR----QGGYCVFIDAEHALD-PSLAETIGVKTENLL--LAQPDCGEQALS 187 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~----~~g~v~~~~~e~~~~-~~~~~~~g~~~~~~~--~~~~~~~~e~~~ 187 (271)
-+++|++++|.|+||+|||||++.|++...+ .+|.|. ++...... ....+.+++.+|+.. +....+..+++.
T Consensus 8 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~-~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~ 86 (230)
T TIGR02770 8 SLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEIL-LDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMGNHAI 86 (230)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEE-ECCEechhhhhhhheeEEEecCchhhcCcccCHHHHHH
Confidence 4679999999999999999999999999987 788855 44432221 122346788888763 334456655443
Q ss_pred HHHHHHhc----------CCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHH
Q 024152 188 LVDTLIRS----------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALR 236 (271)
Q Consensus 188 ~~~~l~~~----------~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r 236 (271)
........ .-++.+-++............-+.|++|+...++++. ...+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~ 166 (230)
T TIGR02770 87 ETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLK 166 (230)
T ss_pred HHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHH
Confidence 21110000 0011111110000011111112338888888888873 2233
Q ss_pred HHHHHHhhcCcEEEEEccccc
Q 024152 237 KLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 237 ~L~~lake~~~~Vi~~sql~~ 257 (271)
.|..++++.+.+||+++|...
T Consensus 167 ~l~~~~~~~~~tiii~sH~~~ 187 (230)
T TIGR02770 167 LLRELRQLFGTGILLITHDLG 187 (230)
T ss_pred HHHHHHHhcCCEEEEEeCCHH
Confidence 444455556899999999753
No 194
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.20 E-value=5e-11 Score=102.87 Aligned_cols=139 Identities=14% Similarity=0.157 Sum_probs=85.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC-HHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 193 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~-~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~ 193 (271)
-+.+|++++|.|+||+|||||+..+++...+..|.|.+.+ +.... ....+.+++.+++..+++..++.+++.......
T Consensus 21 ~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g-~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~ 99 (235)
T cd03299 21 EVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNG-KDITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKR 99 (235)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECC-EEcCcCChhHcCEEEEeecCccCCCccHHHHHHHHHHHc
Confidence 4669999999999999999999999999999989855443 32211 123456888888877776677777665432110
Q ss_pred -------hc---CCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHH
Q 024152 194 -------RS---GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSL 242 (271)
Q Consensus 194 -------~~---~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~la 242 (271)
.. .-.+.+-+....... -..+ +.|++++...++++. .....|..++
T Consensus 100 ~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~L--S~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~ 176 (235)
T cd03299 100 KVDKKEIERKVLEIAEMLGIDHLLNRK-PETL--SGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIR 176 (235)
T ss_pred CCCHHHHHHHHHHHHHHcCChhHHhcC-cccC--CHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHH
Confidence 00 001111111111111 1122 348888888888873 2223444445
Q ss_pred hhcCcEEEEEccccc
Q 024152 243 SLSQTILIFINQVFS 257 (271)
Q Consensus 243 ke~~~~Vi~~sql~~ 257 (271)
.+.+++|++++|-..
T Consensus 177 ~~~~~tili~tH~~~ 191 (235)
T cd03299 177 KEFGVTVLHVTHDFE 191 (235)
T ss_pred HhcCCEEEEEecCHH
Confidence 556899999999653
No 195
>PRK10908 cell division protein FtsE; Provisional
Probab=99.20 E-value=6.6e-11 Score=101.16 Aligned_cols=138 Identities=16% Similarity=0.128 Sum_probs=83.9
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC--C-H---HHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D-P---SLAETIGVKTENLLLAQPDCGEQALSL 188 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~--~-~---~~~~~~g~~~~~~~~~~~~~~~e~~~~ 188 (271)
-+++|++++|.|+||+|||||++.|++...+..|.|.+ +.+... . . .+.+.+++.+|+..++...++.+++..
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~-~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~ 102 (222)
T PRK10908 24 HMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWF-SGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAI 102 (222)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE-CCEEcccCChhHHHHHHhheEEEecCccccccccHHHHHHh
Confidence 57799999999999999999999999999888898554 433211 1 1 245678888888766666677766654
Q ss_pred HHHHHh----------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHH
Q 024152 189 VDTLIR----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRK 237 (271)
Q Consensus 189 ~~~l~~----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~ 237 (271)
...... ..-++.+-++...... ...++ .|++|+...++++. .....
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~ 179 (222)
T PRK10908 103 PLIIAGASGDDIRRRVSAALDKVGLLDKAKNF-PIQLS--GGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRL 179 (222)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCChhhhhCC-chhCC--HHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHH
Confidence 321100 0001111111111111 12233 37888888888873 12233
Q ss_pred HHHHHhhcCcEEEEEccccc
Q 024152 238 LSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 238 L~~lake~~~~Vi~~sql~~ 257 (271)
|..+. +.+.+||+++|-..
T Consensus 180 l~~~~-~~~~tiii~sH~~~ 198 (222)
T PRK10908 180 FEEFN-RVGVTVLMATHDIG 198 (222)
T ss_pred HHHHH-HCCCEEEEEeCCHH
Confidence 44333 34889999999653
No 196
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.20 E-value=8.3e-11 Score=103.13 Aligned_cols=139 Identities=15% Similarity=0.114 Sum_probs=84.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhc---CCeEEEEcCCCCC-------C-HHHHHHcCCcCCcceecCCCCHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ---GGYCVFIDAEHAL-------D-PSLAETIGVKTENLLLAQPDCGE 183 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~---~g~v~~~~~e~~~-------~-~~~~~~~g~~~~~~~~~~~~~~~ 183 (271)
-+++|++++|+|+||+|||||++.|++...+. +|.|.| ++.... . ..+.+.+++.+|+..++...++.
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~-~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 104 (262)
T PRK09984 26 NIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIEL-LGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVL 104 (262)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEE-CCEecccccccchhHHHHHhheEEEccccccccCCcHH
Confidence 56699999999999999999999999998865 377554 433211 1 23355688999987776666777
Q ss_pred HHHHHHHHH---------------Hh---cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH-------------
Q 024152 184 QALSLVDTL---------------IR---SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS------------- 232 (271)
Q Consensus 184 e~~~~~~~l---------------~~---~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~------------- 232 (271)
+++...... .. ..-+..+-++...... ...+ +.|++|+...++++.
T Consensus 105 e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~L--S~G~~qrv~laral~~~p~llllDEPt~ 181 (262)
T PRK09984 105 ENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQR-VSTL--SGGQQQRVAIARALMQQAKVILADEPIA 181 (262)
T ss_pred HHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCC-cccc--CHHHHHHHHHHHHHhcCCCEEEecCccc
Confidence 766532100 00 0001111111111111 1223 338888888888773
Q ss_pred --------HHHHHHHHHHhhcCcEEEEEccccc
Q 024152 233 --------QALRKLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 233 --------~~~r~L~~lake~~~~Vi~~sql~~ 257 (271)
...+.|+.++++.+.+||+++|-..
T Consensus 182 ~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~ 214 (262)
T PRK09984 182 SLDPESARIVMDTLRDINQNDGITVVVTLHQVD 214 (262)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 2333444445556899999999764
No 197
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.20 E-value=7.2e-11 Score=99.66 Aligned_cols=73 Identities=15% Similarity=0.106 Sum_probs=53.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHh---hcCCeEEEEcCCCCC--CHHHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQ---RQGGYCVFIDAEHAL--DPSLAETIGVKTENLLLAQPDCGEQALSL 188 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~---~~~g~v~~~~~e~~~--~~~~~~~~g~~~~~~~~~~~~~~~e~~~~ 188 (271)
-+++|++++|+|+||+|||||+..+++... +.+|.+.+ +..... .....+.+++.+|+...+...++.+++..
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i-~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~ 106 (202)
T cd03233 29 VVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHY-NGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDF 106 (202)
T ss_pred EECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEE-CCEECccchhhhcceEEEEecccccCCCCcHHHHHhh
Confidence 567999999999999999999999999988 77887554 433221 12334567888887666666677776654
No 198
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.20 E-value=7.2e-11 Score=101.68 Aligned_cols=59 Identities=25% Similarity=0.338 Sum_probs=49.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC----CHHHHHHcCCcCCcc
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL----DPSLAETIGVKTENL 174 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~----~~~~~~~~g~~~~~~ 174 (271)
.+++|+.++|.|+||+|||||++++++.+.+.+|.| +++..... ...+.+.+|+.+|+.
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v-~~~g~~~~~~~~~~~~~~~vG~VfQnp 88 (235)
T COG1122 26 EIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV-LVDGLDTSSEKSLLELRQKVGLVFQNP 88 (235)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEE-EECCeeccchhhHHHhhcceEEEEECc
Confidence 688999999999999999999999999999999986 55554332 346788899999886
No 199
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.20 E-value=4.6e-11 Score=105.94 Aligned_cols=139 Identities=14% Similarity=0.095 Sum_probs=84.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcC---CeEEEEcCCCCCC---HHHHHHcCCcCCcce-ecCCCCHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQG---GYCVFIDAEHALD---PSLAETIGVKTENLL-LAQPDCGEQALS 187 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~---g~v~~~~~e~~~~---~~~~~~~g~~~~~~~-~~~~~~~~e~~~ 187 (271)
-+++|++++|.|+||+|||||++.|++...+.. |.| +++.+.... ..+.+.+++.+|+.. .+...++.+++.
T Consensus 29 ~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i-~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~ 107 (282)
T PRK13640 29 SIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKI-TVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVA 107 (282)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEE-EECCEECCcCCHHHHHhheEEEEECHHHhhccCCHHHHHH
Confidence 577999999999999999999999999998876 664 455443221 234567888888763 344467776665
Q ss_pred HHHHHHh----------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHH
Q 024152 188 LVDTLIR----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALR 236 (271)
Q Consensus 188 ~~~~l~~----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r 236 (271)
+...... ..-+..+-++...... ...++ .|++++...++++. ....
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-~~~LS--~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~ 184 (282)
T PRK13640 108 FGLENRAVPRPEMIKIVRDVLADVGMLDYIDSE-PANLS--GGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILK 184 (282)
T ss_pred hhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCC-cccCC--HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHH
Confidence 3221100 0001111111111111 12233 37888888888773 2333
Q ss_pred HHHHHHhhcCcEEEEEccccc
Q 024152 237 KLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 237 ~L~~lake~~~~Vi~~sql~~ 257 (271)
.|..++++.+.+||+++|...
T Consensus 185 ~l~~l~~~~g~tvli~tH~~~ 205 (282)
T PRK13640 185 LIRKLKKKNNLTVISITHDID 205 (282)
T ss_pred HHHHHHHhcCCEEEEEecCHH
Confidence 445555566899999999764
No 200
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.20 E-value=7.5e-11 Score=103.09 Aligned_cols=137 Identities=15% Similarity=0.146 Sum_probs=85.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC----------------CHHHHHHcCCcCCcceecC
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL----------------DPSLAETIGVKTENLLLAQ 178 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~----------------~~~~~~~~g~~~~~~~~~~ 178 (271)
-+++|++++|.|+||+|||||++.+++...+..|.|. ++.+... ...+.+.+++.+|+..++.
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~ 105 (257)
T PRK10619 27 QANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIV-VNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWS 105 (257)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE-ECCEEcccccccccccccccchHHHHHhhceEEEecCcccCC
Confidence 5779999999999999999999999999988888854 4443221 1234567889999877776
Q ss_pred CCCHHHHHHHHH-HHHh----------cCCccEEEEcchh-hhcCCCccCCccchhhHHHHHHHHH--------------
Q 024152 179 PDCGEQALSLVD-TLIR----------SGSVDVVVVDSVA-ALVPKGELDGEMGDAHMAMQARLMS-------------- 232 (271)
Q Consensus 179 ~~~~~e~~~~~~-~l~~----------~~~~~lvvID~l~-~~~~~~~l~~~~g~~~~~~~~~~l~-------------- 232 (271)
..++.+++.... .+.. ..-++.+-++... ... ...++ .|++|+...++++.
T Consensus 106 ~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-~~~LS--~G~~qrv~laral~~~p~llllDEPt~~ 182 (257)
T PRK10619 106 HMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKY-PVHLS--GGQQQRVSIARALAMEPEVLLFDEPTSA 182 (257)
T ss_pred CCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCC-cccCC--HHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 678777664321 1100 0001111111110 111 12333 38888888888873
Q ss_pred -------HHHHHHHHHHhhcCcEEEEEcccc
Q 024152 233 -------QALRKLSHSLSLSQTILIFINQVF 256 (271)
Q Consensus 233 -------~~~r~L~~lake~~~~Vi~~sql~ 256 (271)
...+.|+.+ ++.+++||+++|-.
T Consensus 183 LD~~~~~~l~~~l~~l-~~~g~tiiivsH~~ 212 (257)
T PRK10619 183 LDPELVGEVLRIMQQL-AEEGKTMVVVTHEM 212 (257)
T ss_pred CCHHHHHHHHHHHHHH-HhcCCEEEEEeCCH
Confidence 222233333 34589999999965
No 201
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.19 E-value=3.2e-11 Score=107.35 Aligned_cols=138 Identities=17% Similarity=0.194 Sum_probs=86.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC-------CHHHHHHcCCcCCcc--eecCCCCHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-------DPSLAETIGVKTENL--LLAQPDCGEQA 185 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~-------~~~~~~~~g~~~~~~--~~~~~~~~~e~ 185 (271)
-+++|++++|.|+||+|||||++.+++...+..|.|.| +.+... ...+++.+++.+|+. .++ ..++.++
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~-~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~-~~tv~en 106 (290)
T PRK13634 29 SIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTI-GERVITAGKKNKKLKPLRKKVGIVFQFPEHQLF-EETVEKD 106 (290)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEE-CCEECccccccchHHHHHhhEEEEeeCchhhhh-hhhHHHH
Confidence 67799999999999999999999999999999998655 433211 124456789999875 233 3466666
Q ss_pred HHHHHHHH--------h--cCCccEEEEc-chhhhcCCCccCCccchhhHHHHHHHHH---------------------H
Q 024152 186 LSLVDTLI--------R--SGSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMS---------------------Q 233 (271)
Q Consensus 186 ~~~~~~l~--------~--~~~~~lvvID-~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~ 233 (271)
+.+..... . ..-++.+-++ .+.... ...++ .|++|+...++++. .
T Consensus 107 i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-~~~LS--gGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~ 183 (290)
T PRK13634 107 ICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARS-PFELS--GGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKE 183 (290)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCC-cccCC--HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHH
Confidence 55432110 0 0001111121 111111 12233 38888888888873 2
Q ss_pred HHHHHHHHHhhcCcEEEEEccccc
Q 024152 234 ALRKLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 234 ~~r~L~~lake~~~~Vi~~sql~~ 257 (271)
+...|..++++.+.|||+++|...
T Consensus 184 l~~~L~~l~~~~g~tviiitHd~~ 207 (290)
T PRK13634 184 MMEMFYKLHKEKGLTTVLVTHSME 207 (290)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHH
Confidence 334555556667999999999764
No 202
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.19 E-value=1.2e-10 Score=96.17 Aligned_cols=121 Identities=21% Similarity=0.319 Sum_probs=81.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC--CHHHHHHcCCcCCcceecCCCCHHHH-------
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--DPSLAETIGVKTENLLLAQPDCGEQA------- 185 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~--~~~~~~~~g~~~~~~~~~~~~~~~e~------- 185 (271)
-+++|++++|.|+||+|||||++.+++...+..|.+. ++..... ...+.+.+++.+|+..++. .++.++
T Consensus 24 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~-~~g~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~i~~~LS~ 101 (178)
T cd03247 24 ELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT-LDGVPVSDLEKALSSLISVLNQRPYLFD-TTLRNNLGRRFSG 101 (178)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEE-ECCEEHHHHHHHHHhhEEEEccCCeeec-ccHHHhhcccCCH
Confidence 5779999999999999999999999999999899865 4433211 1234556788888766553 344432
Q ss_pred -----HHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccc
Q 024152 186 -----LSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 186 -----~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~ 257 (271)
+.+++.+. .+++++++|....-.+. .-.+.+.+.++.+ . .+.+||+++|...
T Consensus 102 G~~qrv~laral~--~~p~~lllDEP~~~LD~-------------~~~~~l~~~l~~~---~--~~~tii~~sh~~~ 158 (178)
T cd03247 102 GERQRLALARILL--QDAPIVLLDEPTVGLDP-------------ITERQLLSLIFEV---L--KDKTLIWITHHLT 158 (178)
T ss_pred HHHHHHHHHHHHh--cCCCEEEEECCcccCCH-------------HHHHHHHHHHHHH---c--CCCEEEEEecCHH
Confidence 33445444 47899999987765420 1112333444433 2 3789999999764
No 203
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.19 E-value=3e-11 Score=103.21 Aligned_cols=139 Identities=16% Similarity=0.118 Sum_probs=87.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC--C----HHHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D----PSLAETIGVKTENLLLAQPDCGEQALSL 188 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~--~----~~~~~~~g~~~~~~~~~~~~~~~e~~~~ 188 (271)
-+++|++++|.|+||+|||||+..|++...+..|.|. ++..... . ..+.+.+++.+|+..++...++.+++..
T Consensus 27 ~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~-~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~ 105 (220)
T TIGR02982 27 EINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLK-VLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQM 105 (220)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE-ECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHH
Confidence 4669999999999999999999999999888888855 4433221 1 1345678888988777766777776654
Q ss_pred HHHHHhc-----------CCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHH
Q 024152 189 VDTLIRS-----------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALR 236 (271)
Q Consensus 189 ~~~l~~~-----------~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r 236 (271)
....... .-.+.+-++.... .....-+.|++|+...++++. ....
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~ 182 (220)
T TIGR02982 106 ALELQPNLSYQEARERARAMLEAVGLGDHLD---YYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVE 182 (220)
T ss_pred HHHhccCCCHHHHHHHHHHHHHHcCChhhhh---cChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHH
Confidence 4321100 0001111111111 111112347888888888773 2334
Q ss_pred HHHHHHhhcCcEEEEEccccc
Q 024152 237 KLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 237 ~L~~lake~~~~Vi~~sql~~ 257 (271)
.|+.+.++.+.+||+++|-..
T Consensus 183 ~l~~~~~~~~~tii~~sh~~~ 203 (220)
T TIGR02982 183 LMQKLAREQGCTILIVTHDNR 203 (220)
T ss_pred HHHHHHHHcCCEEEEEeCCHH
Confidence 555555567899999999864
No 204
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.19 E-value=7.4e-11 Score=96.51 Aligned_cols=111 Identities=16% Similarity=0.147 Sum_probs=71.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHH--------
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQAL-------- 186 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~-------- 186 (271)
-+++|++++|.|+||+|||||++.+++...+..|.+.+ ... +.+++.+|+..+. ..++.+++
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~-~~~--------~~i~~~~q~~~~~-~~tv~~nl~~~~~~~L 92 (166)
T cd03223 23 EIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGM-PEG--------EDLLFLPQRPYLP-LGTLREQLIYPWDDVL 92 (166)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE-CCC--------ceEEEECCCCccc-cccHHHHhhccCCCCC
Confidence 56799999999999999999999999999888887554 321 2345555554332 22333332
Q ss_pred --------HHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccc
Q 024152 187 --------SLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 187 --------~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~ 257 (271)
.+++.+. .+++++++|+.....+. ...+.+.+.+ ++.+.++|+++|-..
T Consensus 93 S~G~~~rv~laral~--~~p~~lllDEPt~~LD~-------------~~~~~l~~~l-------~~~~~tiiivsh~~~ 149 (166)
T cd03223 93 SGGEQQRLAFARLLL--HKPKFVFLDEATSALDE-------------ESEDRLYQLL-------KELGITVISVGHRPS 149 (166)
T ss_pred CHHHHHHHHHHHHHH--cCCCEEEEECCccccCH-------------HHHHHHHHHH-------HHhCCEEEEEeCChh
Confidence 3344443 46889999987665420 0112222222 233689999999753
No 205
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.19 E-value=2.8e-11 Score=104.53 Aligned_cols=139 Identities=16% Similarity=0.132 Sum_probs=82.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC--CHHHHHHcCCcC-CcceecCCCCHHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--DPSLAETIGVKT-ENLLLAQPDCGEQALSLVDT 191 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~--~~~~~~~~g~~~-~~~~~~~~~~~~e~~~~~~~ 191 (271)
-+++|++++|.|+||+|||||++.|++...+..|.+.+ +.+... ...+.+.+++.+ +...++...++.+++.....
T Consensus 43 ~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~-~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~ 121 (236)
T cd03267 43 TIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRV-AGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAA 121 (236)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE-CCEEccccchhhcccEEEEcCCccccCCCCcHHHHHHHHHH
Confidence 46699999999999999999999999999999998654 332211 123345677765 44445555677776544322
Q ss_pred HHh----------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHH
Q 024152 192 LIR----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSH 240 (271)
Q Consensus 192 l~~----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~ 240 (271)
... ..-.+.+-++...... -..++ .|++++...++++. .....|..
T Consensus 122 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~LS--~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 198 (236)
T cd03267 122 IYDLPPARFKKRLDELSELLDLEELLDTP-VRQLS--LGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKE 198 (236)
T ss_pred HcCCCHHHHHHHHHHHHHHcCChhHhcCC-hhhCC--HHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHH
Confidence 110 0001111111111100 11233 37788877777763 23334444
Q ss_pred HHhhcCcEEEEEccccc
Q 024152 241 SLSLSQTILIFINQVFS 257 (271)
Q Consensus 241 lake~~~~Vi~~sql~~ 257 (271)
++++.+.+||+++|...
T Consensus 199 ~~~~~~~tiiivsH~~~ 215 (236)
T cd03267 199 YNRERGTTVLLTSHYMK 215 (236)
T ss_pred HHhcCCCEEEEEecCHH
Confidence 45556899999999764
No 206
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.18 E-value=1.2e-10 Score=103.06 Aligned_cols=139 Identities=14% Similarity=0.164 Sum_probs=83.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC---CHHHHHHcCCcCCcce-ecCCCCHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLL-LAQPDCGEQALSLVD 190 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~---~~~~~~~~g~~~~~~~-~~~~~~~~e~~~~~~ 190 (271)
-+++|++++|.|+||+|||||++.|++...+..|.|.| ++.... ...+.+.+++.+|+.. .....++.+++....
T Consensus 26 ~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~-~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~ 104 (277)
T PRK13652 26 IAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLI-RGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGP 104 (277)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-CCEECCcCCHHHHHhheEEEecCcccccccccHHHHHHhHH
Confidence 56799999999999999999999999999999998654 433221 2345667888888752 222356666654322
Q ss_pred HHHh----------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHH
Q 024152 191 TLIR----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLS 239 (271)
Q Consensus 191 ~l~~----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~ 239 (271)
.... ..-.+.+-+... ..+....-+.|++++...++++. ...+.|.
T Consensus 105 ~~~~~~~~~~~~~~~~~l~~~~l~~~---~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~ 181 (277)
T PRK13652 105 INLGLDEETVAHRVSSALHMLGLEEL---RDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLN 181 (277)
T ss_pred HHcCCCHHHHHHHHHHHHHHCCChhH---hcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 1100 000111111111 11111122337788888887772 2333444
Q ss_pred HHHhhcCcEEEEEccccc
Q 024152 240 HSLSLSQTILIFINQVFS 257 (271)
Q Consensus 240 ~lake~~~~Vi~~sql~~ 257 (271)
.+.++.+++||+++|...
T Consensus 182 ~l~~~~g~tvli~tH~~~ 199 (277)
T PRK13652 182 DLPETYGMTVIFSTHQLD 199 (277)
T ss_pred HHHHhcCCEEEEEecCHH
Confidence 445556899999999764
No 207
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.18 E-value=1.1e-10 Score=101.05 Aligned_cols=72 Identities=19% Similarity=0.218 Sum_probs=55.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC---------CHHHHHHcCCcCCcceecCCCCHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---------DPSLAETIGVKTENLLLAQPDCGEQA 185 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~---------~~~~~~~~g~~~~~~~~~~~~~~~e~ 185 (271)
-+++|++++|.|+||+|||||++.+++...+..|.|.+ +.+... ...+.+.+++.+|+...+...++.++
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~-~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~ 102 (242)
T PRK11124 24 DCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNI-AGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQN 102 (242)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE-CCEecccccccchhhHHHHHhheEEEecCccccCCCcHHHH
Confidence 56699999999999999999999999999888898554 433210 12345578889988877766777776
Q ss_pred HH
Q 024152 186 LS 187 (271)
Q Consensus 186 ~~ 187 (271)
+.
T Consensus 103 i~ 104 (242)
T PRK11124 103 LI 104 (242)
T ss_pred HH
Confidence 54
No 208
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.18 E-value=1.4e-10 Score=93.44 Aligned_cols=73 Identities=18% Similarity=0.227 Sum_probs=53.6
Q ss_pred cCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC---HHHHHHcCCcCCcceec
Q 024152 102 TGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLA 177 (271)
Q Consensus 102 Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~---~~~~~~~g~~~~~~~~~ 177 (271)
++-+-||.+-- .+.+|+.++|.||+|||||||.+++|....++.|. ++|.+|.... ..++.++.|..|...++
T Consensus 14 ~~a~il~~isl--~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~-l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLf 89 (223)
T COG4619 14 GDAKILNNISL--SVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGT-LLFEGEDVSTLKPEAYRQQVSYCAQTPALF 89 (223)
T ss_pred CCCeeecceee--eecCCceEEEeCCCCccHHHHHHHHHhccCCCCce-EEEcCccccccChHHHHHHHHHHHcCcccc
Confidence 34445565554 78899999999999999999999999999999997 5566554332 35566666666554443
No 209
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.18 E-value=1.8e-10 Score=95.29 Aligned_cols=111 Identities=19% Similarity=0.222 Sum_probs=74.9
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCH--HHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCG--EQALSLVDTL 192 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~--~e~~~~~~~l 192 (271)
-+++|++++|.|+||+|||||++.+++...+++|.|.|.+ . .+++.+|... .+. .+.+.+++.+
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-~---------~i~~~~q~~~----LSgGq~qrv~laral 86 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDG-I---------TPVYKPQYID----LSGGELQRVAIAAAL 86 (177)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECC-E---------EEEEEcccCC----CCHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999865533 1 1344454432 333 3445556666
Q ss_pred HhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccc
Q 024152 193 IRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 193 ~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~ 257 (271)
. .+++++++|....-.+ . .-.+.+.+.++.+ +++.+.+|++++|...
T Consensus 87 ~--~~p~lllLDEPts~LD---------~----~~~~~l~~~l~~~---~~~~~~tiiivsH~~~ 133 (177)
T cd03222 87 L--RNATFYLFDEPSAYLD---------I----EQRLNAARAIRRL---SEEGKKTALVVEHDLA 133 (177)
T ss_pred h--cCCCEEEEECCcccCC---------H----HHHHHHHHHHHHH---HHcCCCEEEEEECCHH
Confidence 5 4689999998776552 0 1112233333333 4444589999999764
No 210
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.18 E-value=6.8e-11 Score=102.34 Aligned_cols=74 Identities=20% Similarity=0.203 Sum_probs=55.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC-C-H-HHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-D-P-SLAETIGVKTENLLLAQPDCGEQALSL 188 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~-~-~-~~~~~~g~~~~~~~~~~~~~~~e~~~~ 188 (271)
-+.+|++++|.|+||+|||||++.+++...+.+|.|.+.+..... . . .....+++.+|+..++...++.+++..
T Consensus 24 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~ 100 (242)
T TIGR03411 24 YVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLEL 100 (242)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCHHHHHHH
Confidence 577999999999999999999999999999999986554422111 1 1 223458888888777777788776654
No 211
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.18 E-value=1.4e-10 Score=103.10 Aligned_cols=145 Identities=17% Similarity=0.176 Sum_probs=87.2
Q ss_pred HHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC----C---HHHHHHcCCcCCcc--ee
Q 024152 106 ALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL----D---PSLAETIGVKTENL--LL 176 (271)
Q Consensus 106 ~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~----~---~~~~~~~g~~~~~~--~~ 176 (271)
.|+.+.- -+++|++++|.|+||+|||||++.|++...+..|.|.| +..... . ..+.+.+++.+|+. .+
T Consensus 22 ~l~~vsl--~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~-~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l 98 (286)
T PRK13646 22 AIHDVNT--EFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTV-DDITITHKTKDKYIRPVRKRIGMVFQFPESQL 98 (286)
T ss_pred ceeeeEE--EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE-CCEECccccccchHHHHHhheEEEecChHhcc
Confidence 3444433 67799999999999999999999999999999998654 433221 1 24567799999975 23
Q ss_pred cCCCCHHHHHHHHHHHH-------hc---CCccEEEEc-chhhhcCCCccCCccchhhHHHHHHHHH-------------
Q 024152 177 AQPDCGEQALSLVDTLI-------RS---GSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMS------------- 232 (271)
Q Consensus 177 ~~~~~~~e~~~~~~~l~-------~~---~~~~lvvID-~l~~~~~~~~l~~~~g~~~~~~~~~~l~------------- 232 (271)
+. .++.+++.+..... .. .-+..+-++ ...... ...++ .|++|+...++++.
T Consensus 99 ~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-~~~LS--gGq~qrv~laraL~~~p~illlDEPt~ 174 (286)
T PRK13646 99 FE-DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQS-PFQMS--GGQMRKIAIVSILAMNPDIIVLDEPTA 174 (286)
T ss_pred ch-hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCC-cccCC--HHHHHHHHHHHHHHhCCCEEEEECCcc
Confidence 32 36666655422110 00 001111111 110111 12233 38888888888873
Q ss_pred --------HHHHHHHHHHhhcCcEEEEEccccc
Q 024152 233 --------QALRKLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 233 --------~~~r~L~~lake~~~~Vi~~sql~~ 257 (271)
.....|..+.++.++|||+++|-..
T Consensus 175 ~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~ 207 (286)
T PRK13646 175 GLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN 207 (286)
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 2233444444556899999999764
No 212
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.17 E-value=1.2e-10 Score=102.36 Aligned_cols=139 Identities=17% Similarity=0.198 Sum_probs=85.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC--C-H---HHHHHcCCcCCcc--eecCCCCHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D-P---SLAETIGVKTENL--LLAQPDCGEQAL 186 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~--~-~---~~~~~~g~~~~~~--~~~~~~~~~e~~ 186 (271)
-+++|++++|.|+||+|||||++.|++...+.+|.|.| +.+... . . .+.+.+++.+|.. .+....++.+++
T Consensus 33 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~-~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l 111 (265)
T TIGR02769 33 SIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSF-RGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQII 111 (265)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE-CCEEccccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHH
Confidence 56799999999999999999999999999999998654 433221 1 1 1345688888875 344456777665
Q ss_pred HHHHHHHh-----------cCCccEEEEc-chhhhcCCCccCCccchhhHHHHHHHHH---------------------H
Q 024152 187 SLVDTLIR-----------SGSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMS---------------------Q 233 (271)
Q Consensus 187 ~~~~~l~~-----------~~~~~lvvID-~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~ 233 (271)
........ ..-+..+-++ .+.... ...++ .|++|+...++++. .
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-~~~LS--gGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~ 188 (265)
T TIGR02769 112 GEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKL-PRQLS--GGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAV 188 (265)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCC-hhhCC--HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 43211000 0001111121 111111 12333 38888888888873 2
Q ss_pred HHHHHHHHHhhcCcEEEEEccccc
Q 024152 234 ALRKLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 234 ~~r~L~~lake~~~~Vi~~sql~~ 257 (271)
..+.|..++++.+.+||+++|...
T Consensus 189 l~~~l~~~~~~~g~tiiivsH~~~ 212 (265)
T TIGR02769 189 ILELLRKLQQAFGTAYLFITHDLR 212 (265)
T ss_pred HHHHHHHHHHhcCcEEEEEeCCHH
Confidence 344555555566899999999764
No 213
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.17 E-value=6e-11 Score=104.47 Aligned_cols=139 Identities=20% Similarity=0.185 Sum_probs=81.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC--C-HHHHHHcCCcCCcce-ecCCCCHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D-PSLAETIGVKTENLL-LAQPDCGEQALSLVD 190 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~--~-~~~~~~~g~~~~~~~-~~~~~~~~e~~~~~~ 190 (271)
-+++|++++|.|+||+|||||++.|++...+..|.|. +++.... . ..+.+.+++.+|+.. .+...++.+++.+..
T Consensus 31 ~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~-~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~ 109 (269)
T PRK13648 31 NIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIF-YNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGL 109 (269)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEE-ECCEECCcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhH
Confidence 5779999999999999999999999999998889855 4443221 1 244566888888753 333344444332211
Q ss_pred HHH--------h--cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHH
Q 024152 191 TLI--------R--SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLS 239 (271)
Q Consensus 191 ~l~--------~--~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~ 239 (271)
... . ..-.+.+-++...... ...++ .|++++...++++. ...+.|.
T Consensus 110 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~ 186 (269)
T PRK13648 110 ENHAVPYDEMHRRVSEALKQVDMLERADYE-PNALS--GGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVR 186 (269)
T ss_pred HhcCCCHHHHHHHHHHHHHHcCCchhhhCC-cccCC--HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 100 0 0000111111111111 12233 37788887777763 2333444
Q ss_pred HHHhhcCcEEEEEccccc
Q 024152 240 HSLSLSQTILIFINQVFS 257 (271)
Q Consensus 240 ~lake~~~~Vi~~sql~~ 257 (271)
.++++.+.+||+++|...
T Consensus 187 ~~~~~~~~tiiivtH~~~ 204 (269)
T PRK13648 187 KVKSEHNITIISITHDLS 204 (269)
T ss_pred HHHHhcCCEEEEEecCch
Confidence 444556899999999764
No 214
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.17 E-value=5.9e-11 Score=106.41 Aligned_cols=138 Identities=18% Similarity=0.194 Sum_probs=84.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC--------------------------CCHHHHHHcC
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA--------------------------LDPSLAETIG 168 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~--------------------------~~~~~~~~~g 168 (271)
-+++|++++|.|+||+|||||++.+++...+..|.|.+.+.... ....+.+.+|
T Consensus 29 ~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig 108 (305)
T PRK13651 29 EINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVG 108 (305)
T ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccchHHHHHhceE
Confidence 56799999999999999999999999999999998665432110 0124566789
Q ss_pred CcCCcc--eecCCCCHHHHHHHHHHHH--------h--cCCccEEEEc-chhhhcCCCccCCccchhhHHHHHHHHHH--
Q 024152 169 VKTENL--LLAQPDCGEQALSLVDTLI--------R--SGSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMSQ-- 233 (271)
Q Consensus 169 ~~~~~~--~~~~~~~~~e~~~~~~~l~--------~--~~~~~lvvID-~l~~~~~~~~l~~~~g~~~~~~~~~~l~~-- 233 (271)
+.+|+. .++ ..++.+.+.+..... . ..-+..+-++ .+.... ...++ .|++|+...++++..
T Consensus 109 ~v~Q~~~~~l~-~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-~~~LS--gGqkqrvalA~aL~~~P 184 (305)
T PRK13651 109 VVFQFAEYQLF-EQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRS-PFELS--GGQKRRVALAGILAMEP 184 (305)
T ss_pred EEeeCcccccc-cccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCC-hhhCC--HHHHHHHHHHHHHHhCC
Confidence 999874 333 347766665432110 0 0001111121 111111 12233 388888888888732
Q ss_pred -------------------HHHHHHHHHhhcCcEEEEEccccc
Q 024152 234 -------------------ALRKLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 234 -------------------~~r~L~~lake~~~~Vi~~sql~~ 257 (271)
....|..+. +.++|||+++|-..
T Consensus 185 ~lLlLDEPt~~LD~~~~~~l~~~l~~l~-~~g~tiiivtHd~~ 226 (305)
T PRK13651 185 DFLVFDEPTAGLDPQGVKEILEIFDNLN-KQGKTIILVTHDLD 226 (305)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEeeCHH
Confidence 223333333 56999999999764
No 215
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.17 E-value=5.6e-11 Score=105.13 Aligned_cols=140 Identities=18% Similarity=0.110 Sum_probs=86.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC---CHHHHHHcCCcCCcce-ecCCCCHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLL-LAQPDCGEQALSLVD 190 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~---~~~~~~~~g~~~~~~~-~~~~~~~~e~~~~~~ 190 (271)
-+.+|++++|+|+||+|||||+..+++...+..|.|.| +++... ...+.+.+++.+|+.. .....++.+++....
T Consensus 29 ~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~-~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~ 107 (277)
T PRK13642 29 SITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKI-DGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGM 107 (277)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEE-CCEECCcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhH
Confidence 56699999999999999999999999999999998654 433221 1244567888888753 344456666654321
Q ss_pred HHHh----------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHH
Q 024152 191 TLIR----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLS 239 (271)
Q Consensus 191 ~l~~----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~ 239 (271)
.... ..-...+-++.+.... ...++ .|++|+...++++. .....|.
T Consensus 108 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~ 184 (277)
T PRK13642 108 ENQGIPREEMIKRVDEALLAVNMLDFKTRE-PARLS--GGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIH 184 (277)
T ss_pred HHcCCCHHHHHHHHHHHHHHCCCHhHhhCC-cccCC--HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 1100 0001111111111111 12233 37888888888873 2334555
Q ss_pred HHHhhcCcEEEEEcccccc
Q 024152 240 HSLSLSQTILIFINQVFSI 258 (271)
Q Consensus 240 ~lake~~~~Vi~~sql~~~ 258 (271)
+++++.+.+||+++|-...
T Consensus 185 ~l~~~~g~tiil~sH~~~~ 203 (277)
T PRK13642 185 EIKEKYQLTVLSITHDLDE 203 (277)
T ss_pred HHHHhcCCEEEEEeCCHHH
Confidence 5566679999999997643
No 216
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.17 E-value=6.3e-11 Score=103.49 Aligned_cols=74 Identities=22% Similarity=0.322 Sum_probs=54.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC-CC-HHHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA-LD-PSLAETIGVKTENLLLAQPDCGEQALSL 188 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~-~~-~~~~~~~g~~~~~~~~~~~~~~~e~~~~ 188 (271)
-+++|++++|.|+||+|||||++.+++...+.+|.+.+.+..-. .. ..+.+.+++.+|+..+....++.+++..
T Consensus 24 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~ 99 (255)
T PRK11231 24 SLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAY 99 (255)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccHHHHHHh
Confidence 46699999999999999999999999998888898655432211 11 2344568888888766655677666543
No 217
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.17 E-value=2.4e-10 Score=100.11 Aligned_cols=74 Identities=27% Similarity=0.312 Sum_probs=54.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC--CCHHHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA--LDPSLAETIGVKTENLLLAQPDCGEQALSL 188 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~--~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~ 188 (271)
-+++|++++|.|+||+|||||++.|++...+..|.|.+.+..-. ....+.+.+++.+|+..+....++.+++..
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~ 99 (258)
T PRK13548 24 TLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAM 99 (258)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHHHHHHh
Confidence 56699999999999999999999999999899998655432211 112344567888887666555677666543
No 218
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.17 E-value=8.1e-11 Score=103.55 Aligned_cols=140 Identities=19% Similarity=0.135 Sum_probs=81.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC--CHHHHHHcCCcCCcce--ecCCCCHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--DPSLAETIGVKTENLL--LAQPDCGEQALSLVD 190 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~--~~~~~~~~g~~~~~~~--~~~~~~~~e~~~~~~ 190 (271)
-+++|++++|+||||+|||||++.|++...+..|.|.|.+.+... ...+.+.+++.+|+.. +.+..++.+++....
T Consensus 35 ~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~ 114 (267)
T PRK15112 35 TLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPL 114 (267)
T ss_pred EecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHH
Confidence 677999999999999999999999999999999986654322111 1223345788887753 233334454443211
Q ss_pred HHHh-----------cCCccEEEEc-chhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHH
Q 024152 191 TLIR-----------SGSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRK 237 (271)
Q Consensus 191 ~l~~-----------~~~~~lvvID-~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~ 237 (271)
.... ..-++.+-++ ...... ...++ .|++|+...++++. .....
T Consensus 115 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~LS--~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~ 191 (267)
T PRK15112 115 RLNTDLEPEQREKQIIETLRQVGLLPDHASYY-PHMLA--PGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINL 191 (267)
T ss_pred HhccCCCHHHHHHHHHHHHHHcCCChHHHhcC-chhcC--HHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHH
Confidence 1100 0001111111 111111 12233 37888888888773 22334
Q ss_pred HHHHHhhcCcEEEEEccccc
Q 024152 238 LSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 238 L~~lake~~~~Vi~~sql~~ 257 (271)
|..++++.+.+||+++|...
T Consensus 192 l~~~~~~~g~tviivsH~~~ 211 (267)
T PRK15112 192 MLELQEKQGISYIYVTQHLG 211 (267)
T ss_pred HHHHHHHcCcEEEEEeCCHH
Confidence 44445556899999999763
No 219
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.16 E-value=1.1e-10 Score=98.97 Aligned_cols=73 Identities=19% Similarity=0.188 Sum_probs=55.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC-CCHHHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA-LDPSLAETIGVKTENLLLAQPDCGEQALSL 188 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~-~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~ 188 (271)
-+++| +++|.|+||+|||||++.+++...+..|.|.+.+.+.. ....+.+.+++.+|+..++...++.+++..
T Consensus 22 ~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~ 95 (211)
T cd03264 22 TLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDY 95 (211)
T ss_pred EEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCCCcccccCCHHHHHHH
Confidence 56699 99999999999999999999999999998665442211 113446678888988777666777776654
No 220
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.16 E-value=1.2e-10 Score=102.77 Aligned_cols=139 Identities=16% Similarity=0.142 Sum_probs=83.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC--C-HHHHHHcCCcCCcce-ecCCCCHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D-PSLAETIGVKTENLL-LAQPDCGEQALSLVD 190 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~--~-~~~~~~~g~~~~~~~-~~~~~~~~e~~~~~~ 190 (271)
-+++|++++|.|+||+|||||++.+++...+..|.|.+ +..... . ..+.+.+++.+|+.. .+...++.+++....
T Consensus 31 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~-~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~ 109 (271)
T PRK13632 31 EINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKI-DGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGL 109 (271)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE-CCEecCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHH
Confidence 67799999999999999999999999999998898554 433221 1 244566888888753 333456766654422
Q ss_pred HHHh-c---------CCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHH
Q 024152 191 TLIR-S---------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLS 239 (271)
Q Consensus 191 ~l~~-~---------~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~ 239 (271)
.... . .-++.+-++...... -..++ .|++|+...++++. .....|.
T Consensus 110 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~ 186 (271)
T PRK13632 110 ENKKVPPKKMKDIIDDLAKKVGMEDYLDKE-PQNLS--GGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMV 186 (271)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCHHHhhCC-cccCC--HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 1100 0 000111111111111 12233 37888888888772 2333444
Q ss_pred HHHhhcCcEEEEEccccc
Q 024152 240 HSLSLSQTILIFINQVFS 257 (271)
Q Consensus 240 ~lake~~~~Vi~~sql~~ 257 (271)
+++++.+.+||+++|...
T Consensus 187 ~~~~~~~~tiii~sH~~~ 204 (271)
T PRK13632 187 DLRKTRKKTLISITHDMD 204 (271)
T ss_pred HHHHhcCcEEEEEEechh
Confidence 445555689999999764
No 221
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.16 E-value=5.5e-11 Score=105.03 Aligned_cols=138 Identities=17% Similarity=0.222 Sum_probs=83.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC----CHHHHHHcCCcCCcce-ecCCCCHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL----DPSLAETIGVKTENLL-LAQPDCGEQALSLV 189 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~----~~~~~~~~g~~~~~~~-~~~~~~~~e~~~~~ 189 (271)
-+++|++++|.|+||+|||||++.+++...+..|.|.+ +..... ...+.+.+++.+|+.. .+...++.+++.+.
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~-~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~ 102 (274)
T PRK13644 24 VIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLV-SGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFG 102 (274)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE-CCEECCccccHHHHHhheEEEEEChhhhcccchHHHHHHhh
Confidence 57799999999999999999999999999999998554 433221 1345567888888753 23335666655443
Q ss_pred HHHH--------h--cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHH
Q 024152 190 DTLI--------R--SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKL 238 (271)
Q Consensus 190 ~~l~--------~--~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L 238 (271)
.... . ..-.+.+-++...... ...++ .|++|+...++++. .+...|
T Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~LS--~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l 179 (274)
T PRK13644 103 PENLCLPPIEIRKRVDRALAEIGLEKYRHRS-PKTLS--GGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERI 179 (274)
T ss_pred HHHcCCCHHHHHHHHHHHHHHCCCHHHhcCC-cccCC--HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 2110 0 0001111111111111 12333 38888888888873 223344
Q ss_pred HHHHhhcCcEEEEEccccc
Q 024152 239 SHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 239 ~~lake~~~~Vi~~sql~~ 257 (271)
.++. +.+.+||+++|-..
T Consensus 180 ~~l~-~~g~til~~tH~~~ 197 (274)
T PRK13644 180 KKLH-EKGKTIVYITHNLE 197 (274)
T ss_pred HHHH-hCCCEEEEEecCHH
Confidence 4333 45899999999764
No 222
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.16 E-value=1.2e-10 Score=103.41 Aligned_cols=140 Identities=15% Similarity=0.137 Sum_probs=85.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC---C-CHHHHHHcCCcCCcce-ecCCCCHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA---L-DPSLAETIGVKTENLL-LAQPDCGEQALSLV 189 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~---~-~~~~~~~~g~~~~~~~-~~~~~~~~e~~~~~ 189 (271)
-+++|++++|.|+||+|||||++.|++...+..|.+.+.+.... . ...+.+.+++.+|+.. .....++.+++...
T Consensus 28 ~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~ 107 (283)
T PRK13636 28 NIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFG 107 (283)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhH
Confidence 57799999999999999999999999999999998655432211 1 1245667899988753 22335666665432
Q ss_pred HHHHh----------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHH
Q 024152 190 DTLIR----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKL 238 (271)
Q Consensus 190 ~~l~~----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L 238 (271)
..... ..-+..+-++.. .......-+.|++|+...++++. .+...|
T Consensus 108 ~~~~~~~~~~~~~~~~~~l~~~gL~~~---~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l 184 (283)
T PRK13636 108 AVNLKLPEDEVRKRVDNALKRTGIEHL---KDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLL 184 (283)
T ss_pred HHHcCCCHHHHHHHHHHHHHHCCChhh---hhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence 21100 000011111111 11111122337888888888772 233445
Q ss_pred HHHHhhcCcEEEEEccccc
Q 024152 239 SHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 239 ~~lake~~~~Vi~~sql~~ 257 (271)
..++++.+.+|++++|...
T Consensus 185 ~~l~~~~g~tillvsH~~~ 203 (283)
T PRK13636 185 VEMQKELGLTIIIATHDID 203 (283)
T ss_pred HHHHHhCCCEEEEEecCHH
Confidence 5556666999999999764
No 223
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.15 E-value=1.2e-10 Score=100.64 Aligned_cols=142 Identities=16% Similarity=0.168 Sum_probs=84.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC-HHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 193 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~-~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~ 193 (271)
-+.+|++++|.|+||+|||||+..|++...+..|.|. ++.+.... ....+.+++.++....++..+..+++.......
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~-i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~ 100 (237)
T TIGR00968 22 EVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIR-LNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIR 100 (237)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEE-ECCEEcCcCChhhcCEEEEecChhhccCCcHHHHHHhHHHhc
Confidence 4669999999999999999999999999988888865 44332211 123456788888877666667776665432210
Q ss_pred hcC-CccEEEEcch------hhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHHhhc
Q 024152 194 RSG-SVDVVVVDSV------AALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSLSLS 245 (271)
Q Consensus 194 ~~~-~~~lvvID~l------~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~lake~ 245 (271)
... ....-.++.+ ..........-+.|+.|+...++++. .+...|..+.++.
T Consensus 101 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~ 180 (237)
T TIGR00968 101 KHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEV 180 (237)
T ss_pred CCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc
Confidence 000 0000000111 01111111122347788887777773 2233444444445
Q ss_pred CcEEEEEccccc
Q 024152 246 QTILIFINQVFS 257 (271)
Q Consensus 246 ~~~Vi~~sql~~ 257 (271)
+++||++||...
T Consensus 181 ~~tvli~sH~~~ 192 (237)
T TIGR00968 181 HVTTVFVTHDQE 192 (237)
T ss_pred CCEEEEEeCCHH
Confidence 899999999764
No 224
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.15 E-value=1.6e-10 Score=102.39 Aligned_cols=140 Identities=17% Similarity=0.151 Sum_probs=83.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC----HHHHHHcCCcCCcce-ecCCCCHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD----PSLAETIGVKTENLL-LAQPDCGEQALSLV 189 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~----~~~~~~~g~~~~~~~-~~~~~~~~e~~~~~ 189 (271)
-+++|++++|.|+||+|||||++.+++...+..|.|.+ +.+.... ..+.+.+++.+|+.. .....++.+++.+.
T Consensus 32 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i-~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~ 110 (280)
T PRK13633 32 EVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYV-DGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFG 110 (280)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE-CCEeccccccHHHHhhheEEEecChhhhhccccHHHHHHhh
Confidence 57799999999999999999999999999999998554 4332221 244667888888753 12224555555432
Q ss_pred HHHHh----------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHH
Q 024152 190 DTLIR----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKL 238 (271)
Q Consensus 190 ~~l~~----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L 238 (271)
..... ..-++.+-+....... ...++ .|++|+...++++. .....|
T Consensus 111 ~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-~~~LS--~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l 187 (280)
T PRK13633 111 PENLGIPPEEIRERVDESLKKVGMYEYRRHA-PHLLS--GGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTI 187 (280)
T ss_pred HhhcCCCHHHHHHHHHHHHHHCCCHhHhhCC-cccCC--HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 11100 0000111111111111 12233 37788888887772 233344
Q ss_pred HHHHhhcCcEEEEEcccccc
Q 024152 239 SHSLSLSQTILIFINQVFSI 258 (271)
Q Consensus 239 ~~lake~~~~Vi~~sql~~~ 258 (271)
.+++++.+++||+++|....
T Consensus 188 ~~l~~~~g~tillvtH~~~~ 207 (280)
T PRK13633 188 KELNKKYGITIILITHYMEE 207 (280)
T ss_pred HHHHHhcCCEEEEEecChHH
Confidence 44555679999999997643
No 225
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.15 E-value=5e-11 Score=102.94 Aligned_cols=74 Identities=20% Similarity=0.321 Sum_probs=55.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC-CCH--HHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA-LDP--SLAETIGVKTENLLLAQPDCGEQALSL 188 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~-~~~--~~~~~~g~~~~~~~~~~~~~~~e~~~~ 188 (271)
-+.+|++++|+|+||+|||||++.+++...+.+|.|.+.+..-. ... .+.+.+++.+|+...+...++.+++..
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~ 103 (237)
T PRK11614 27 HINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAM 103 (237)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHH
Confidence 57799999999999999999999999999999998655432211 111 234568888888776666677776654
No 226
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.15 E-value=2.7e-10 Score=95.00 Aligned_cols=85 Identities=26% Similarity=0.257 Sum_probs=66.4
Q ss_pred CcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC--CCHHHHHHcCCcCCcceecCCC
Q 024152 103 GSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA--LDPSLAETIGVKTENLLLAQPD 180 (271)
Q Consensus 103 g~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~--~~~~~~~~~g~~~~~~~~~~~~ 180 (271)
|=.-||.+-- -+++|++.+|.||||+|||||++.+++...+.+|.|.|++..-. ....+++..++.+|+-.+..+.
T Consensus 13 Gr~ll~~vsl--~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpF 90 (259)
T COG4559 13 GRRLLDGVSL--DLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPF 90 (259)
T ss_pred cceeccCcce--eccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccce
Confidence 4334444433 68899999999999999999999999999999999888764322 2236788889999988887777
Q ss_pred CHHHHHHHH
Q 024152 181 CGEQALSLV 189 (271)
Q Consensus 181 ~~~e~~~~~ 189 (271)
++.|++.+-
T Consensus 91 tv~eVV~mG 99 (259)
T COG4559 91 TVQEVVQMG 99 (259)
T ss_pred EHHHHHHhc
Confidence 877776553
No 227
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.15 E-value=1.2e-10 Score=100.74 Aligned_cols=133 Identities=19% Similarity=0.222 Sum_probs=89.9
Q ss_pred cHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC---CC------HHHHHHcCCcCCcc
Q 024152 104 SFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA---LD------PSLAETIGVKTENL 174 (271)
Q Consensus 104 ~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~---~~------~~~~~~~g~~~~~~ 174 (271)
+..+|.+-- .+.+|++++|+|.+||||||+++.+++...+.+|.|.|-+..-. .. ..+...+|...+.+
T Consensus 26 v~avd~Vsf--~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~ 103 (268)
T COG4608 26 VKAVDGVSF--SIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFL 103 (268)
T ss_pred eEEecceeE--EEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHh
Confidence 345555544 67799999999999999999999999999999998555432211 10 13344566444433
Q ss_pred eecCC-CCH--HHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEE
Q 024152 175 LLAQP-DCG--EQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIF 251 (271)
Q Consensus 175 ~~~~~-~~~--~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~ 251 (271)
..+++ .+. .|-+.++|.+. .++++++.|....+.+- ..+ ++++..|+.+-++.+.+.++
T Consensus 104 ~ryPhelSGGQrQRi~IARALa--l~P~liV~DEpvSaLDv-------------Siq---aqIlnLL~dlq~~~~lt~lF 165 (268)
T COG4608 104 YRYPHELSGGQRQRIGIARALA--LNPKLIVADEPVSALDV-------------SVQ---AQILNLLKDLQEELGLTYLF 165 (268)
T ss_pred hcCCcccCchhhhhHHHHHHHh--hCCcEEEecCchhhcch-------------hHH---HHHHHHHHHHHHHhCCeEEE
Confidence 33322 232 35566677764 57999999998877631 111 24555566667899999999
Q ss_pred Ecccc
Q 024152 252 INQVF 256 (271)
Q Consensus 252 ~sql~ 256 (271)
++|-.
T Consensus 166 IsHDL 170 (268)
T COG4608 166 ISHDL 170 (268)
T ss_pred EEEEH
Confidence 99965
No 228
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.15 E-value=1.2e-10 Score=100.83 Aligned_cols=74 Identities=19% Similarity=0.248 Sum_probs=53.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHH--hhcCCeEEEEcCCCCC--CH-HH-HHHcCCcCCcceecCCCCHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEA--QRQGGYCVFIDAEHAL--DP-SL-AETIGVKTENLLLAQPDCGEQALSL 188 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~--~~~~g~v~~~~~e~~~--~~-~~-~~~~g~~~~~~~~~~~~~~~e~~~~ 188 (271)
-+++|++++|.|+||+|||||++.|++.. .+..|.|. ++..... .. .. ...+++.+|+...+...++.+++..
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~-~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~ 100 (243)
T TIGR01978 22 TVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTIL-FKGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRS 100 (243)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEE-ECCEecCCCCHHHhhccceEeeeccccccCCcCHHHHHHH
Confidence 56699999999999999999999999984 57788755 4433221 11 22 2336788888777766777776654
Q ss_pred H
Q 024152 189 V 189 (271)
Q Consensus 189 ~ 189 (271)
.
T Consensus 101 ~ 101 (243)
T TIGR01978 101 A 101 (243)
T ss_pred H
Confidence 3
No 229
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.15 E-value=2.6e-10 Score=92.93 Aligned_cols=132 Identities=17% Similarity=0.247 Sum_probs=89.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC------------CC----HHHHHHcCCcCCcceecC
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA------------LD----PSLAETIGVKTENLLLAQ 178 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~------------~~----~~~~~~~g~~~~~~~~~~ 178 (271)
-...|++|.|+|.+|+|||||++||...-.|..|.+ .++.|.. .+ +.++.++++.+|+++++.
T Consensus 28 ~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I-~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWs 106 (256)
T COG4598 28 QANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSI-RVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWS 106 (256)
T ss_pred ecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceE-EECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhH
Confidence 356999999999999999999999998888888874 4444321 11 256778999999999998
Q ss_pred CCCHHHHH----------------HHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH----------
Q 024152 179 PDCGEQAL----------------SLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------- 232 (271)
Q Consensus 179 ~~~~~e~~----------------~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------- 232 (271)
.+++-|+. +.+..++. .+-|+.-...|| ..+++ |++||+..+|+++
T Consensus 107 HmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~-----kVGi~ek~~~YP-~~LSG--GQQQR~aIARaLameP~vmLFDE 178 (256)
T COG4598 107 HMTVLENVIEAPVHVLGVSKAEAIERAEKYLA-----KVGIAEKADAYP-AHLSG--GQQQRVAIARALAMEPEVMLFDE 178 (256)
T ss_pred HHHHHHHHHhcchHhhcCCHHHHHHHHHHHHH-----HhCchhhhhcCc-cccCc--hHHHHHHHHHHHhcCCceEeecC
Confidence 88876543 22222322 222333223343 34444 8889999888873
Q ss_pred -----------HHHHHHHHHHhhcCcEEEEEcccc
Q 024152 233 -----------QALRKLSHSLSLSQTILIFINQVF 256 (271)
Q Consensus 233 -----------~~~r~L~~lake~~~~Vi~~sql~ 256 (271)
+.++-+..+| |.|.|.++++|-+
T Consensus 179 PTSALDPElVgEVLkv~~~LA-eEgrTMv~VTHEM 212 (256)
T COG4598 179 PTSALDPELVGEVLKVMQDLA-EEGRTMVVVTHEM 212 (256)
T ss_pred CcccCCHHHHHHHHHHHHHHH-HhCCeEEEEeeeh
Confidence 3444444444 6677888888865
No 230
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.15 E-value=2.1e-10 Score=100.28 Aligned_cols=73 Identities=19% Similarity=0.258 Sum_probs=54.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC---CCHHHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA---LDPSLAETIGVKTENLLLAQPDCGEQALSL 188 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~---~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~ 188 (271)
-+++|++++|.|+||+|||||++.|++...+..|.|.| +.+.. ....+.+.+++.+|+.......++.+++..
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~-~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~ 98 (256)
T TIGR03873 23 TAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDL-AGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVAL 98 (256)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEE-CCEEcccCCHHHHhhheEEecccCccCCCCCHHHHHHh
Confidence 56699999999999999999999999999888998654 43321 112334568888888755555677776644
No 231
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.14 E-value=8.7e-11 Score=104.44 Aligned_cols=137 Identities=16% Similarity=0.147 Sum_probs=84.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC-------CHHHHHHcCCcCCcc--eecCCCCHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-------DPSLAETIGVKTENL--LLAQPDCGEQA 185 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~-------~~~~~~~~g~~~~~~--~~~~~~~~~e~ 185 (271)
-+++|++++|.|+||+|||||++.|++...+..|.|.+ +.+... .......+++.+|+. .++ ..++.++
T Consensus 29 ~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~-~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~-~~tv~e~ 106 (287)
T PRK13641 29 ELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITI-AGYHITPETGNKNLKKLRKKVSLVFQFPEAQLF-ENTVLKD 106 (287)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE-CCEECccccccchHHHHHhceEEEEeChhhhhc-cchHHHH
Confidence 57799999999999999999999999999999998554 443221 123455688888875 233 3577776
Q ss_pred HHHHHHHHh----------cCCccEEEEc-chhhhcCCCccCCccchhhHHHHHHHHH---------------------H
Q 024152 186 LSLVDTLIR----------SGSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMS---------------------Q 233 (271)
Q Consensus 186 ~~~~~~l~~----------~~~~~lvvID-~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~ 233 (271)
+.+...... ..-++.+-++ .+.... ...++ .|++|+...++++. .
T Consensus 107 l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-~~~LS--gGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~ 183 (287)
T PRK13641 107 VEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKS-PFELS--GGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKE 183 (287)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCC-cccCC--HHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHH
Confidence 654322100 0001111111 111111 12333 38888888888873 2
Q ss_pred HHHHHHHHHhhcCcEEEEEccccc
Q 024152 234 ALRKLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 234 ~~r~L~~lake~~~~Vi~~sql~~ 257 (271)
....|..+ ++.+.+||+++|...
T Consensus 184 l~~~l~~l-~~~g~tvlivsH~~~ 206 (287)
T PRK13641 184 MMQLFKDY-QKAGHTVILVTHNMD 206 (287)
T ss_pred HHHHHHHH-HhCCCEEEEEeCCHH
Confidence 22233333 345899999999764
No 232
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.14 E-value=1.1e-10 Score=110.14 Aligned_cols=139 Identities=19% Similarity=0.191 Sum_probs=91.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhc----CCeEEEEcCCCCC-C-----HHHHHHcCCcCCcc-eecCC-CCH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ----GGYCVFIDAEHAL-D-----PSLAETIGVKTENL-LLAQP-DCG 182 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~----~g~v~~~~~e~~~-~-----~~~~~~~g~~~~~~-~~~~~-~~~ 182 (271)
-+.+|++++|+|.+||||||+++.+.+..... +|.|+|.+.+... . +.+.+.+++.+|+. ...++ +++
T Consensus 31 ~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tI 110 (539)
T COG1123 31 EVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTI 110 (539)
T ss_pred EecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCchhhH
Confidence 56699999999999999999999999998876 6787766543211 1 13446678888874 22333 344
Q ss_pred HHHH-HHHHHHH-------h---cCCccEEEEcchhh--hcCCCccCCccchhhHHHHHHHH------------------
Q 024152 183 EQAL-SLVDTLI-------R---SGSVDVVVVDSVAA--LVPKGELDGEMGDAHMAMQARLM------------------ 231 (271)
Q Consensus 183 ~e~~-~~~~~l~-------~---~~~~~lvvID~l~~--~~~~~~l~~~~g~~~~~~~~~~l------------------ 231 (271)
.+.+ +..+... . ..-++.|-+..-.. .+| +++++ |++||++.+.++
T Consensus 111 g~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yP-heLSG--G~rQRv~iAmALa~~P~LLIaDEPTTaLDv 187 (539)
T COG1123 111 GDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYP-HQLSG--GMRQRVMIAMALALKPKLLIADEPTTALDV 187 (539)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCC-cccCc--hHHHHHHHHHHHhCCCCEEEECCCccccCH
Confidence 3222 2111100 0 00122222322222 253 66666 999999999888
Q ss_pred ---HHHHHHHHHHHhhcCcEEEEEcccc
Q 024152 232 ---SQALRKLSHSLSLSQTILIFINQVF 256 (271)
Q Consensus 232 ---~~~~r~L~~lake~~~~Vi~~sql~ 256 (271)
.+++..|+.+.++.|++++++||..
T Consensus 188 t~q~qIL~llk~l~~e~g~a~l~ITHDl 215 (539)
T COG1123 188 TTQAQILDLLKDLQRELGMAVLFITHDL 215 (539)
T ss_pred HHHHHHHHHHHHHHHHcCcEEEEEcCCH
Confidence 4678888999999999999999965
No 233
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.14 E-value=1.7e-10 Score=98.62 Aligned_cols=137 Identities=17% Similarity=0.192 Sum_probs=80.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHh
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 194 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~ 194 (271)
-+.+|++++|.|+||+|||||++.+++...+..|.|.+.+ ....... .+.+++.++...++...++.+++........
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~-~~~~~~~-~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~ 99 (223)
T TIGR03740 22 TVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDG-HPWTRKD-LHKIGSLIESPPLYENLTARENLKVHTTLLG 99 (223)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-Eeccccc-cccEEEEcCCCCccccCCHHHHHHHHHHHcC
Confidence 4669999999999999999999999999988989865433 2211111 2357777777666655677666544322110
Q ss_pred cC------CccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHHhhcCc
Q 024152 195 SG------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSLSLSQT 247 (271)
Q Consensus 195 ~~------~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~lake~~~ 247 (271)
.. -++.+-++...... ...++ .|++++...++++. .....|..+ ++.+.
T Consensus 100 ~~~~~~~~~l~~~~l~~~~~~~-~~~LS--~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~-~~~~~ 175 (223)
T TIGR03740 100 LPDSRIDEVLNIVDLTNTGKKK-AKQFS--LGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSF-PEQGI 175 (223)
T ss_pred CCHHHHHHHHHHcCCcHHHhhh-HhhCC--HHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHH-HHCCC
Confidence 00 01111111111111 11222 37777777777762 222333333 34588
Q ss_pred EEEEEccccc
Q 024152 248 ILIFINQVFS 257 (271)
Q Consensus 248 ~Vi~~sql~~ 257 (271)
+||+++|...
T Consensus 176 tiii~sH~~~ 185 (223)
T TIGR03740 176 TVILSSHILS 185 (223)
T ss_pred EEEEEcCCHH
Confidence 9999999753
No 234
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.14 E-value=1.1e-10 Score=103.31 Aligned_cols=138 Identities=13% Similarity=0.135 Sum_probs=82.9
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC-----CC-HHHHHHcCCcCCcc--eecCCCCHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA-----LD-PSLAETIGVKTENL--LLAQPDCGEQAL 186 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~-----~~-~~~~~~~g~~~~~~--~~~~~~~~~e~~ 186 (271)
-+++|++++|.|+||+|||||++.|++...+..|.|.+.+.+.. .. ..+.+.+++.+|.. .++. .++.+++
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l 107 (280)
T PRK13649 29 TIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFE-ETVLKDV 107 (280)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhcc-ccHHHHH
Confidence 67799999999999999999999999999999998655432211 11 23456688888875 2333 4676665
Q ss_pred HHHHHHHh----------cCCccEEEEc-chhhhcCCCccCCccchhhHHHHHHHHH---------------------HH
Q 024152 187 SLVDTLIR----------SGSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMS---------------------QA 234 (271)
Q Consensus 187 ~~~~~l~~----------~~~~~lvvID-~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~ 234 (271)
.+...... ..-++.+-++ .+.... ...++ .|++|+...++++. ..
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~LS--gG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l 184 (280)
T PRK13649 108 AFGPQNFGVSQEEAEALAREKLALVGISESLFEKN-PFELS--GGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKEL 184 (280)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCC-cccCC--HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 44221100 0000111111 111111 12233 38888888888873 22
Q ss_pred HHHHHHHHhhcCcEEEEEccccc
Q 024152 235 LRKLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 235 ~r~L~~lake~~~~Vi~~sql~~ 257 (271)
...|+.+. +.+.+||+++|...
T Consensus 185 ~~~l~~~~-~~~~tiiivsH~~~ 206 (280)
T PRK13649 185 MTLFKKLH-QSGMTIVLVTHLMD 206 (280)
T ss_pred HHHHHHHH-HCCCEEEEEeccHH
Confidence 33444443 34899999999763
No 235
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.14 E-value=2.2e-10 Score=94.91 Aligned_cols=124 Identities=19% Similarity=0.268 Sum_probs=77.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC--C-HHHHHHcCCcCCcc----------eecCCCC
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D-PSLAETIGVKTENL----------LLAQPDC 181 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~--~-~~~~~~~g~~~~~~----------~~~~~~~ 181 (271)
-+++|++++|.|+||+|||||++.+++...+..|.|.| +..... . ..+...+++.+|-+ ......+
T Consensus 21 ~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~-~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS 99 (180)
T cd03214 21 SIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILL-DGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELS 99 (180)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE-CCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCC
Confidence 56799999999999999999999999999899998654 432211 1 12333445443210 1111223
Q ss_pred HH--HHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccc
Q 024152 182 GE--QALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 182 ~~--e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~ 257 (271)
.- +-+.+++.+. .+++++++|....-.+. .-.+.+.+.++.+ .++.++++|+++|...
T Consensus 100 ~G~~qrl~laral~--~~p~llllDEP~~~LD~-------------~~~~~~~~~l~~~---~~~~~~tiii~sh~~~ 159 (180)
T cd03214 100 GGERQRVLLARALA--QEPPILLLDEPTSHLDI-------------AHQIELLELLRRL---ARERGKTVVMVLHDLN 159 (180)
T ss_pred HHHHHHHHHHHHHh--cCCCEEEEeCCccCCCH-------------HHHHHHHHHHHHH---HHhcCCEEEEEeCCHH
Confidence 22 3345566655 47899999987755420 1112333334333 4555899999999764
No 236
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.14 E-value=9.6e-11 Score=104.24 Aligned_cols=138 Identities=14% Similarity=0.179 Sum_probs=84.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC-------CHHHHHHcCCcCCcc--eecCCCCHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-------DPSLAETIGVKTENL--LLAQPDCGEQA 185 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~-------~~~~~~~~g~~~~~~--~~~~~~~~~e~ 185 (271)
-+++|++++|.|+||+|||||++.+++...+.+|.|. +++.... ...+++.+++.+|+. .++. .++.+.
T Consensus 28 ~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~-~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~ 105 (288)
T PRK13643 28 EVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVT-VGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFE-ETVLKD 105 (288)
T ss_pred EEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEE-ECCEECccccccccHHHHHhhEEEEecCcchhccc-chHHHH
Confidence 5779999999999999999999999999999999854 4443221 124566789999875 3333 466666
Q ss_pred HHHHHHHHh----------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HH
Q 024152 186 LSLVDTLIR----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QA 234 (271)
Q Consensus 186 ~~~~~~l~~----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~ 234 (271)
+.+...... ..-++.+-++. .+.......-+.|++|+...++++. ..
T Consensus 106 l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~--~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l 183 (288)
T PRK13643 106 VAFGPQNFGIPKEKAEKIAAEKLEMVGLAD--EFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEM 183 (288)
T ss_pred HHhHHHHcCCCHHHHHHHHHHHHHHcCCCh--hhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHH
Confidence 654322100 00011111110 0111111222348888888888873 22
Q ss_pred HHHHHHHHhhcCcEEEEEccccc
Q 024152 235 LRKLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 235 ~r~L~~lake~~~~Vi~~sql~~ 257 (271)
...|..+. +.+.|||+++|-..
T Consensus 184 ~~~l~~l~-~~g~til~vtHd~~ 205 (288)
T PRK13643 184 MQLFESIH-QSGQTVVLVTHLMD 205 (288)
T ss_pred HHHHHHHH-HCCCEEEEEecCHH
Confidence 23333333 35899999999763
No 237
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.14 E-value=1.1e-10 Score=101.95 Aligned_cols=140 Identities=14% Similarity=0.150 Sum_probs=79.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh----cCCeEEEEcCCCCCCH-HHHHHcCCcCCcce--ecCCCCHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR----QGGYCVFIDAEHALDP-SLAETIGVKTENLL--LAQPDCGEQALS 187 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~----~~g~v~~~~~e~~~~~-~~~~~~g~~~~~~~--~~~~~~~~e~~~ 187 (271)
-+++|++++|.|+||+|||||++.|++...+ .+|.|.+ +....... ...+.+++.+|+.. +.+..+..+...
T Consensus 25 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~-~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~ 103 (254)
T PRK10418 25 TLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLL-DGKPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHAR 103 (254)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEE-CCeeccccccccceEEEEecCCccccCccccHHHHHH
Confidence 5669999999999999999999999999887 7888554 43322111 22345778888753 222334443322
Q ss_pred HHHHHHh--------cCCccEEEEcchhhhcC--CCccCCccchhhHHHHHHHHH---------------------HHHH
Q 024152 188 LVDTLIR--------SGSVDVVVVDSVAALVP--KGELDGEMGDAHMAMQARLMS---------------------QALR 236 (271)
Q Consensus 188 ~~~~l~~--------~~~~~lvvID~l~~~~~--~~~l~~~~g~~~~~~~~~~l~---------------------~~~r 236 (271)
....... ..-++.+-++....... -..++ .|++|+...++++. ....
T Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS--~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~ 181 (254)
T PRK10418 104 ETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMS--GGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILD 181 (254)
T ss_pred HHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccC--HHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHH
Confidence 1100000 00011111111000001 12233 38888888888772 2333
Q ss_pred HHHHHHhhcCcEEEEEccccc
Q 024152 237 KLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 237 ~L~~lake~~~~Vi~~sql~~ 257 (271)
.|..++++.+.+||+++|...
T Consensus 182 ~L~~~~~~~g~til~~sH~~~ 202 (254)
T PRK10418 182 LLESIVQKRALGMLLVTHDMG 202 (254)
T ss_pred HHHHHHHhcCcEEEEEecCHH
Confidence 455556667899999999653
No 238
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.14 E-value=1.1e-10 Score=101.50 Aligned_cols=72 Identities=19% Similarity=0.260 Sum_probs=54.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhc-----CCeEEEEcCCCCC-----CHHHHHHcCCcCCcceecCCCCHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-----GGYCVFIDAEHAL-----DPSLAETIGVKTENLLLAQPDCGEQ 184 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~-----~g~v~~~~~e~~~-----~~~~~~~~g~~~~~~~~~~~~~~~e 184 (271)
-+++|++++|.|+||+|||||++.+++...+. +|.|.+ +..... ...+.+.+++.+|+..++. .++.+
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~-~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e 100 (247)
T TIGR00972 23 DIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLF-DGQDIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYD 100 (247)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEE-CCEEccccccchHHHHhheEEEecCcccCC-CCHHH
Confidence 57799999999999999999999999999887 888655 433221 1234567889888876666 77777
Q ss_pred HHHH
Q 024152 185 ALSL 188 (271)
Q Consensus 185 ~~~~ 188 (271)
++..
T Consensus 101 ~l~~ 104 (247)
T TIGR00972 101 NIAY 104 (247)
T ss_pred HHHh
Confidence 6654
No 239
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.14 E-value=1.1e-10 Score=103.00 Aligned_cols=139 Identities=11% Similarity=0.080 Sum_probs=81.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC---CC-HHHHHHcCCcCCccee-cCCCCHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA---LD-PSLAETIGVKTENLLL-AQPDCGEQALSLV 189 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~---~~-~~~~~~~g~~~~~~~~-~~~~~~~e~~~~~ 189 (271)
-+++|++++|.|+||+|||||++.+++...+.+|.|.+.+.... .. ..+.+.+++.+|+... ....+..+++...
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~ 102 (271)
T PRK13638 23 DFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFS 102 (271)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhhccccccHHHHHHHH
Confidence 56799999999999999999999999999999998654332211 11 2345668888887542 2233455544332
Q ss_pred HHHHh-------c---CCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHH
Q 024152 190 DTLIR-------S---GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKL 238 (271)
Q Consensus 190 ~~l~~-------~---~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L 238 (271)
..... . .-+..+-++...... ...++ .|++|+...++++. .....|
T Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--gG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l 179 (271)
T PRK13638 103 LRNLGVPEAEITRRVDEALTLVDAQHFRHQP-IQCLS--HGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAII 179 (271)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCHhHhcCC-chhCC--HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 11100 0 001111111111111 12233 38888888888873 233344
Q ss_pred HHHHhhcCcEEEEEccccc
Q 024152 239 SHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 239 ~~lake~~~~Vi~~sql~~ 257 (271)
+++. +.+.+||+++|...
T Consensus 180 ~~~~-~~g~tii~vtH~~~ 197 (271)
T PRK13638 180 RRIV-AQGNHVIISSHDID 197 (271)
T ss_pred HHHH-HCCCEEEEEeCCHH
Confidence 4443 35899999999763
No 240
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.14 E-value=1.9e-10 Score=98.41 Aligned_cols=74 Identities=19% Similarity=0.232 Sum_probs=54.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEc-CC--CCC--C-HH----HHHHcCCcCCcceecCCCCHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID-AE--HAL--D-PS----LAETIGVKTENLLLAQPDCGEQ 184 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~-~e--~~~--~-~~----~~~~~g~~~~~~~~~~~~~~~e 184 (271)
-+++|++++|.|+||+|||||++.|++...+..|.|.|.+ .+ ... . .. +.+.+++.+|...+++..++.+
T Consensus 30 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 109 (224)
T TIGR02324 30 TVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALE 109 (224)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccccCCCccHHH
Confidence 5679999999999999999999999999999899866542 21 111 1 11 2345788888877776667776
Q ss_pred HHHH
Q 024152 185 ALSL 188 (271)
Q Consensus 185 ~~~~ 188 (271)
++..
T Consensus 110 ~l~~ 113 (224)
T TIGR02324 110 VVAE 113 (224)
T ss_pred HHHH
Confidence 6543
No 241
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.13 E-value=1.4e-10 Score=113.51 Aligned_cols=146 Identities=18% Similarity=0.143 Sum_probs=93.1
Q ss_pred HHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC-CC-H---HHHHHcCCcCCcc--eecCC
Q 024152 107 LDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA-LD-P---SLAETIGVKTENL--LLAQP 179 (271)
Q Consensus 107 LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~-~~-~---~~~~~~g~~~~~~--~~~~~ 179 (271)
|+.+.- -+++|++++|+|+||||||||++.|++...+..|.|.|.+.+-. .. . .+.+.+++.+|+. .+.+.
T Consensus 340 l~~vs~--~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~ 417 (623)
T PRK10261 340 VEKVSF--DLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPR 417 (623)
T ss_pred EeeeEe--EEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCC
Confidence 444433 67899999999999999999999999999999998665442211 11 1 2344688889885 35555
Q ss_pred CCHHHHHHHHHHHHh-----------cCCccEEEEc-chhhhcCCCccCCccchhhHHHHHHHHH---------------
Q 024152 180 DCGEQALSLVDTLIR-----------SGSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMS--------------- 232 (271)
Q Consensus 180 ~~~~e~~~~~~~l~~-----------~~~~~lvvID-~l~~~~~~~~l~~~~g~~~~~~~~~~l~--------------- 232 (271)
.++.+++........ ..-++.+-++ .....+ ..++++ |++|+...++++.
T Consensus 418 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~-~~~LSg--GqrQRv~iAraL~~~p~llllDEPts~L 494 (623)
T PRK10261 418 QTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRY-PHEFSG--GQRQRICIARALALNPKVIIADEAVSAL 494 (623)
T ss_pred CCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCC-cccCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 677776654221100 0001222222 111112 234444 8999999999883
Q ss_pred ------HHHHHHHHHHhhcCcEEEEEccccc
Q 024152 233 ------QALRKLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 233 ------~~~r~L~~lake~~~~Vi~~sql~~ 257 (271)
.+...|..++++.+.+||++||-..
T Consensus 495 D~~~~~~i~~ll~~l~~~~g~tvi~isHdl~ 525 (623)
T PRK10261 495 DVSIRGQIINLLLDLQRDFGIAYLFISHDMA 525 (623)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 3445566666778999999999753
No 242
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.13 E-value=2.2e-10 Score=103.80 Aligned_cols=139 Identities=23% Similarity=0.253 Sum_probs=85.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhc---CCeEEEEcCCCCC--C-HHH----HHHcCCcCCcc--eecCCCCH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ---GGYCVFIDAEHAL--D-PSL----AETIGVKTENL--LLAQPDCG 182 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~---~g~v~~~~~e~~~--~-~~~----~~~~g~~~~~~--~~~~~~~~ 182 (271)
-+++|++++|+|+||+|||||++.|++...+. +|.|.| +++... . ..+ .+.+++.+|+. .+.+..++
T Consensus 38 ~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~-~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v 116 (330)
T PRK09473 38 SLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATF-NGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRV 116 (330)
T ss_pred EEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEE-CCEECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCH
Confidence 56699999999999999999999999998875 787554 443221 1 122 23588889886 34444565
Q ss_pred HHHHHHHHHHHh-----------cCCccEEEEcchh---hhcCCCccCCccchhhHHHHHHHHH----------------
Q 024152 183 EQALSLVDTLIR-----------SGSVDVVVVDSVA---ALVPKGELDGEMGDAHMAMQARLMS---------------- 232 (271)
Q Consensus 183 ~e~~~~~~~l~~-----------~~~~~lvvID~l~---~~~~~~~l~~~~g~~~~~~~~~~l~---------------- 232 (271)
.+.+........ ..-++.+-++... ..+ ..++++ |++||...++++.
T Consensus 117 ~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~-p~~LSg--G~~QRv~IArAL~~~P~llilDEPts~LD 193 (330)
T PRK09473 117 GEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMY-PHEFSG--GMRQRVMIAMALLCRPKLLIADEPTTALD 193 (330)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCC-cccCCH--HHHHHHHHHHHHHcCCCEEEEeCCCccCC
Confidence 543322111000 0001222222111 112 133444 8999999999883
Q ss_pred -----HHHHHHHHHHhhcCcEEEEEccccc
Q 024152 233 -----QALRKLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 233 -----~~~r~L~~lake~~~~Vi~~sql~~ 257 (271)
.++..|..+.++.+.++|+++|-..
T Consensus 194 ~~~~~~i~~lL~~l~~~~g~til~iTHdl~ 223 (330)
T PRK09473 194 VTVQAQIMTLLNELKREFNTAIIMITHDLG 223 (330)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEECCHH
Confidence 3445666667778999999999763
No 243
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.13 E-value=1.5e-10 Score=100.99 Aligned_cols=38 Identities=26% Similarity=0.455 Sum_probs=34.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEE
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVF 152 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~ 152 (271)
-+++|++++|.|+||+|||||++.|++...+..|.+.+
T Consensus 26 ~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~ 63 (251)
T PRK09544 26 ELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKR 63 (251)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 56799999999999999999999999999888887544
No 244
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.13 E-value=7.6e-11 Score=104.91 Aligned_cols=139 Identities=13% Similarity=0.102 Sum_probs=83.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC--------CCHHHHHHcCCcCCccee-cCCCCHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA--------LDPSLAETIGVKTENLLL-AQPDCGEQA 185 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~--------~~~~~~~~~g~~~~~~~~-~~~~~~~e~ 185 (271)
-+++|++++|.|+||+|||||++.+++...+.+|.|.+ +.+.. ....+.+.+++.+|.... ....++.++
T Consensus 33 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~-~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~en 111 (289)
T PRK13645 33 TFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIV-GDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKD 111 (289)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE-CCEEccccccccccHHHHhccEEEEEeCcchhhhhhHHHHH
Confidence 57799999999999999999999999999998998655 33221 112345567888887521 122466666
Q ss_pred HHHHHHHHhc----------CCccEEEEc-chhhhcCCCccCCccchhhHHHHHHHHH---------------------H
Q 024152 186 LSLVDTLIRS----------GSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMS---------------------Q 233 (271)
Q Consensus 186 ~~~~~~l~~~----------~~~~lvvID-~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~ 233 (271)
+.+....... .-+..+-++ .+.... ...++ .|++|+...++++. .
T Consensus 112 l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~-~~~LS--~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~ 188 (289)
T PRK13645 112 IAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRS-PFELS--GGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEED 188 (289)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCC-hhhCC--HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHH
Confidence 5543221000 000111110 111111 12233 38888888888873 2
Q ss_pred HHHHHHHHHhhcCcEEEEEccccc
Q 024152 234 ALRKLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 234 ~~r~L~~lake~~~~Vi~~sql~~ 257 (271)
..+.|..++++.+++||+++|...
T Consensus 189 l~~~l~~~~~~~~~tiiiisH~~~ 212 (289)
T PRK13645 189 FINLFERLNKEYKKRIIMVTHNMD 212 (289)
T ss_pred HHHHHHHHHHhcCCEEEEEecCHH
Confidence 333444555566899999999753
No 245
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.13 E-value=4.4e-10 Score=96.27 Aligned_cols=68 Identities=21% Similarity=0.252 Sum_probs=48.8
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceec--CCCCHHHHH
Q 024152 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLA--QPDCGEQAL 186 (271)
Q Consensus 116 l~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~--~~~~~~e~~ 186 (271)
+++|++++|.|+||+|||||++.+++...+.+|.+. ++.+... ...+.+++.+|+..+. ...++.+++
T Consensus 3 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~-~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv~~~l 72 (223)
T TIGR03771 3 ADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVK-VAGASPG--KGWRHIGYVPQRHEFAWDFPISVAHTV 72 (223)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEE-ECCccch--HhhCcEEEecccccccCCCCccHHHHH
Confidence 679999999999999999999999999999999855 4444321 2334577777765432 124455543
No 246
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.12 E-value=1e-10 Score=103.32 Aligned_cols=138 Identities=17% Similarity=0.208 Sum_probs=82.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC---C--HHHHHHcCCcCCcce-ecCCCCHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---D--PSLAETIGVKTENLL-LAQPDCGEQALSL 188 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~---~--~~~~~~~g~~~~~~~-~~~~~~~~e~~~~ 188 (271)
-+.+|++++|.|+||+|||||++.|++...+..|.|.| +.+... . ..+.+.+++.+|+.. .....++.+++.+
T Consensus 24 ~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~-~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~ 102 (275)
T PRK13639 24 KAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLI-KGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAF 102 (275)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEE-CCEECccccchHHHHHhheEEEeeChhhhhccccHHHHHHH
Confidence 57799999999999999999999999999888898654 433221 1 235667889988852 2223466666543
Q ss_pred HHHHHh----------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHH
Q 024152 189 VDTLIR----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRK 237 (271)
Q Consensus 189 ~~~l~~----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~ 237 (271)
...... ..-.+.+-++.+.... -.+++ .|++|+...++++. .....
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-~~~LS--~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~ 179 (275)
T PRK13639 103 GPLNLGLSKEEVEKRVKEALKAVGMEGFENKP-PHHLS--GGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKL 179 (275)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHCCCchhhcCC-hhhCC--HHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHH
Confidence 221000 0001111111111111 12233 37888888888772 23334
Q ss_pred HHHHHhhcCcEEEEEccccc
Q 024152 238 LSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 238 L~~lake~~~~Vi~~sql~~ 257 (271)
|.++.+ .+.+|++++|-..
T Consensus 180 l~~l~~-~~~til~vtH~~~ 198 (275)
T PRK13639 180 LYDLNK-EGITIIISTHDVD 198 (275)
T ss_pred HHHHHH-CCCEEEEEecCHH
Confidence 444443 4899999999764
No 247
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.12 E-value=3.8e-10 Score=99.34 Aligned_cols=140 Identities=20% Similarity=0.218 Sum_probs=83.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC-C----HHHHHHcCCcCCcc--eecCCCCHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-D----PSLAETIGVKTENL--LLAQPDCGEQALS 187 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~-~----~~~~~~~g~~~~~~--~~~~~~~~~e~~~ 187 (271)
-+++|++++|.|+||+|||||++.|++...+.+|.|.+.+..... . ..+.+.+++.+|+. .+....+..+++.
T Consensus 34 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~ 113 (268)
T PRK10419 34 SLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIR 113 (268)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHH
Confidence 566999999999999999999999999988888986554322111 1 12456688888875 2334456655543
Q ss_pred HHHH-HH------h----cCCccEEEEc-chhhhcCCCccCCccchhhHHHHHHHHH---------------------HH
Q 024152 188 LVDT-LI------R----SGSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMS---------------------QA 234 (271)
Q Consensus 188 ~~~~-l~------~----~~~~~lvvID-~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~ 234 (271)
.... +. . ..-+..+-++ .+.... ...++ .|++|+...++++. ..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-~~~LS--~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~ 190 (268)
T PRK10419 114 EPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKR-PPQLS--GGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGV 190 (268)
T ss_pred HHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCC-CccCC--hHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHH
Confidence 2110 00 0 0001111111 011111 12233 38888888888873 23
Q ss_pred HHHHHHHHhhcCcEEEEEccccc
Q 024152 235 LRKLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 235 ~r~L~~lake~~~~Vi~~sql~~ 257 (271)
...|..++++.+.+||+++|-..
T Consensus 191 ~~~l~~~~~~~~~tiiivsH~~~ 213 (268)
T PRK10419 191 IRLLKKLQQQFGTACLFITHDLR 213 (268)
T ss_pred HHHHHHHHHHcCcEEEEEECCHH
Confidence 33455555566899999999763
No 248
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.12 E-value=3.9e-10 Score=98.29 Aligned_cols=73 Identities=14% Similarity=0.132 Sum_probs=54.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhc-----CCeEEEEcCCCCC-----CHHHHHHcCCcCCcceecCCCCHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-----GGYCVFIDAEHAL-----DPSLAETIGVKTENLLLAQPDCGEQ 184 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~-----~g~v~~~~~e~~~-----~~~~~~~~g~~~~~~~~~~~~~~~e 184 (271)
-+.+|++++|.|+||+|||||++.+++...+. .|.|. ++.+... ...+.+.+++.+|+..++...++.+
T Consensus 26 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~-~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 104 (253)
T PRK14267 26 KIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVR-LFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYD 104 (253)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEE-ECCEEccccccChHHHhhceeEEecCCccCCCCcHHH
Confidence 57799999999999999999999999998763 77754 4443221 1234567889898877776677777
Q ss_pred HHHH
Q 024152 185 ALSL 188 (271)
Q Consensus 185 ~~~~ 188 (271)
++..
T Consensus 105 nl~~ 108 (253)
T PRK14267 105 NVAI 108 (253)
T ss_pred HHHH
Confidence 7654
No 249
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.12 E-value=1.7e-10 Score=104.54 Aligned_cols=138 Identities=16% Similarity=0.163 Sum_probs=83.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHh----hcCCeEEEEcCCCCC--C-HHH----HHHcCCcCCcce--ecCCCC
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQ----RQGGYCVFIDAEHAL--D-PSL----AETIGVKTENLL--LAQPDC 181 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~----~~~g~v~~~~~e~~~--~-~~~----~~~~g~~~~~~~--~~~~~~ 181 (271)
-+.+|++++|+|+||+|||||++.|++... +..|.|. |+++... . ..+ .+.+++.+|+.. +.+..+
T Consensus 29 ~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~-~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~t 107 (330)
T PRK15093 29 TLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMR-FDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSER 107 (330)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEE-ECCEECCcCCHHHHHHHhCCCEEEEecCcchhcCcccc
Confidence 567999999999999999999999999875 3567755 4443221 1 122 235888888764 333455
Q ss_pred HHHHHHHH-HHHH------------h---cCCccEEEEcch---hhhcCCCccCCccchhhHHHHHHHH-----------
Q 024152 182 GEQALSLV-DTLI------------R---SGSVDVVVVDSV---AALVPKGELDGEMGDAHMAMQARLM----------- 231 (271)
Q Consensus 182 ~~e~~~~~-~~l~------------~---~~~~~lvvID~l---~~~~~~~~l~~~~g~~~~~~~~~~l----------- 231 (271)
+.+.+... .... . ..-++.+-++.. ...+ ..+++ .|++||...++++
T Consensus 108 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~-p~~LS--gG~~QRv~iArAL~~~P~llilDE 184 (330)
T PRK15093 108 VGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSF-PYELT--EGECQKVMIAIALANQPRLLIADE 184 (330)
T ss_pred HHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCC-chhCC--HHHHHHHHHHHHHHCCCCEEEEeC
Confidence 55544321 1000 0 000111222211 0111 12344 3899999999888
Q ss_pred ----------HHHHHHHHHHHhhcCcEEEEEcccc
Q 024152 232 ----------SQALRKLSHSLSLSQTILIFINQVF 256 (271)
Q Consensus 232 ----------~~~~r~L~~lake~~~~Vi~~sql~ 256 (271)
.++.+.|+.+.++.+++||+++|-.
T Consensus 185 Pts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl 219 (330)
T PRK15093 185 PTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDL 219 (330)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 2455566666666799999999975
No 250
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.11 E-value=1.9e-10 Score=104.01 Aligned_cols=139 Identities=15% Similarity=0.169 Sum_probs=84.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh----cCCeEEEEcCCCCC--C-HHHH----HHcCCcCCcce--ecCCCC
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR----QGGYCVFIDAEHAL--D-PSLA----ETIGVKTENLL--LAQPDC 181 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~----~~g~v~~~~~e~~~--~-~~~~----~~~g~~~~~~~--~~~~~~ 181 (271)
-+++|++++|+|+||||||||++.|++...+ .+|.|.| +++... . ..+. +.+++.+|+.. +.+..+
T Consensus 29 ~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~-~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~ 107 (326)
T PRK11022 29 SVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEF-NGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYT 107 (326)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEE-CCEECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCC
Confidence 5779999999999999999999999998863 5677655 433221 1 1222 25788888763 344455
Q ss_pred HHHHHHH-HHHHH----------hcCCccEEEEcch---hhhcCCCccCCccchhhHHHHHHHHH---------------
Q 024152 182 GEQALSL-VDTLI----------RSGSVDVVVVDSV---AALVPKGELDGEMGDAHMAMQARLMS--------------- 232 (271)
Q Consensus 182 ~~e~~~~-~~~l~----------~~~~~~lvvID~l---~~~~~~~~l~~~~g~~~~~~~~~~l~--------------- 232 (271)
+.+.+.. +.... ...-++.+-++.. ...+ ..++++ |++||...++++.
T Consensus 108 v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~-p~~LSg--Gq~QRv~iArAL~~~P~llilDEPts~L 184 (326)
T PRK11022 108 VGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVY-PHQLSG--GMSQRVMIAMAIACRPKLLIADEPTTAL 184 (326)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCC-chhCCH--HHHHHHHHHHHHHhCCCEEEEeCCCCCC
Confidence 5433221 11100 0000122222211 1112 133444 8999999999883
Q ss_pred ------HHHHHHHHHHhhcCcEEEEEccccc
Q 024152 233 ------QALRKLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 233 ------~~~r~L~~lake~~~~Vi~~sql~~ 257 (271)
+++..|..+.++.+.++|+++|-..
T Consensus 185 D~~~~~~il~lL~~l~~~~g~til~iTHdl~ 215 (326)
T PRK11022 185 DVTIQAQIIELLLELQQKENMALVLITHDLA 215 (326)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 3455666666778999999999763
No 251
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.11 E-value=4e-10 Score=98.07 Aligned_cols=73 Identities=16% Similarity=0.129 Sum_probs=54.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCeEEEEcCCCC---CCHHHHHHcCCcCCcceecCCCCHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHA---LDPSLAETIGVKTENLLLAQPDCGEQAL 186 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~-----~~g~v~~~~~e~~---~~~~~~~~~g~~~~~~~~~~~~~~~e~~ 186 (271)
-+++|++++|.|+||+|||||++.|++...+ ..|.|.| +.... ....+.+.+++.+|+..++...++.+++
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~-~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl 103 (250)
T PRK14247 25 EIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYL-DGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENV 103 (250)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEE-CCEECCcCCHHHHhccEEEEeccCccCCCCcHHHHH
Confidence 5669999999999999999999999998864 4777554 43321 1124456788999887666667787776
Q ss_pred HH
Q 024152 187 SL 188 (271)
Q Consensus 187 ~~ 188 (271)
..
T Consensus 104 ~~ 105 (250)
T PRK14247 104 AL 105 (250)
T ss_pred HH
Confidence 54
No 252
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.11 E-value=1.1e-10 Score=99.60 Aligned_cols=70 Identities=23% Similarity=0.293 Sum_probs=51.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC--C-HHHHHHcCCcCCcceecCCCCHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D-PSLAETIGVKTENLLLAQPDCGEQAL 186 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~--~-~~~~~~~g~~~~~~~~~~~~~~~e~~ 186 (271)
-+++|++++|.|+||+|||||+..|++...+..|.+.| +.+... . ..+.+.+++.+|+..++. .++.+++
T Consensus 26 ~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~-~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l 98 (220)
T cd03245 26 TIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLL-DGTDIRQLDPADLRRNIGYVPQDVTLFY-GTLRDNI 98 (220)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEE-CCEEhHHCCHHHHHhhEEEeCCCCcccc-chHHHHh
Confidence 56699999999999999999999999999888888554 433211 1 233456788888766554 4665554
No 253
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.11 E-value=2.9e-10 Score=100.48 Aligned_cols=146 Identities=23% Similarity=0.221 Sum_probs=92.8
Q ss_pred HHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHh-h----cCCeEEEEcCCCCC--CH-----HHHHHcCCcCC
Q 024152 105 FALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQ-R----QGGYCVFIDAEHAL--DP-----SLAETIGVKTE 172 (271)
Q Consensus 105 ~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~-~----~~g~v~~~~~e~~~--~~-----~~~~~~g~~~~ 172 (271)
..+|.+.- .+.+|++++|+|.+||||||+++.|++.+. + .+|.+.| .++... .. .+-+.+++.+|
T Consensus 19 ~av~~vs~--~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f-~g~~l~~l~~~~~~~iRG~~I~mIfQ 95 (316)
T COG0444 19 KAVDGVSF--ELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILF-DGKDLLSLSEKELRKIRGKEIAMIFQ 95 (316)
T ss_pred EEEeceeE--EEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEE-CCcccccCCHHHHHhhcCceEEEEEc
Confidence 34444433 677999999999999999999999999987 3 3456444 443222 22 12345778888
Q ss_pred ccee--cCCCCHH-HHHHHHHHHH-----------hcCCccEEEEcc---hhhhcCCCccCCccchhhHHHHHHHH----
Q 024152 173 NLLL--AQPDCGE-QALSLVDTLI-----------RSGSVDVVVVDS---VAALVPKGELDGEMGDAHMAMQARLM---- 231 (271)
Q Consensus 173 ~~~~--~~~~~~~-e~~~~~~~l~-----------~~~~~~lvvID~---l~~~~~~~~l~~~~g~~~~~~~~~~l---- 231 (271)
+... .+..++. ++.+.++... ...-++.|-|+. ....|| .++++ |++||++.+-++
T Consensus 96 ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YP-helSG--GMrQRV~IAmala~~P 172 (316)
T COG0444 96 DPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYP-HELSG--GMRQRVMIAMALALNP 172 (316)
T ss_pred CchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCC-cccCC--cHHHHHHHHHHHhCCC
Confidence 7422 2223332 2222222110 001133444443 334453 56665 899999988887
Q ss_pred -----------------HHHHHHHHHHHhhcCcEEEEEcccc
Q 024152 232 -----------------SQALRKLSHSLSLSQTILIFINQVF 256 (271)
Q Consensus 232 -----------------~~~~r~L~~lake~~~~Vi~~sql~ 256 (271)
++++..|+++.+|.+.++|+++|-.
T Consensus 173 ~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl 214 (316)
T COG0444 173 KLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDL 214 (316)
T ss_pred CEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 5688888998999999999999965
No 254
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.10 E-value=6e-10 Score=93.86 Aligned_cols=123 Identities=20% Similarity=0.242 Sum_probs=78.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHH--hhcCCeEEEEcCCCCC--CH-HH-HHHcCCcCCcceecCCCCHHHHHH-
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEA--QRQGGYCVFIDAEHAL--DP-SL-AETIGVKTENLLLAQPDCGEQALS- 187 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~--~~~~g~v~~~~~e~~~--~~-~~-~~~~g~~~~~~~~~~~~~~~e~~~- 187 (271)
-+.+|++++|.|+||+|||||++.+++.. .+..|.+.| +.+... .. .. ...+++.+|....+...+..+++.
T Consensus 22 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~-~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~~ 100 (200)
T cd03217 22 TIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILF-KGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRY 100 (200)
T ss_pred EECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEE-CCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHhh
Confidence 45699999999999999999999999984 577888554 433221 11 22 234778888765555555554432
Q ss_pred --------------HHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEc
Q 024152 188 --------------LVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFIN 253 (271)
Q Consensus 188 --------------~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~s 253 (271)
+++.+. .+++++++|....-.+ . .-.+.+.+.++.+ + +.+.+||+++
T Consensus 101 ~~~~LS~G~~qrv~laral~--~~p~illlDEPt~~LD--------~-----~~~~~l~~~L~~~---~-~~~~tiii~s 161 (200)
T cd03217 101 VNEGFSGGEKKRNEILQLLL--LEPDLAILDEPDSGLD--------I-----DALRLVAEVINKL---R-EEGKSVLIIT 161 (200)
T ss_pred ccccCCHHHHHHHHHHHHHh--cCCCEEEEeCCCccCC--------H-----HHHHHHHHHHHHH---H-HCCCEEEEEe
Confidence 233332 4688999998765542 0 1112333334333 3 3588999999
Q ss_pred cccc
Q 024152 254 QVFS 257 (271)
Q Consensus 254 ql~~ 257 (271)
|...
T Consensus 162 h~~~ 165 (200)
T cd03217 162 HYQR 165 (200)
T ss_pred cCHH
Confidence 9654
No 255
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.10 E-value=5.2e-10 Score=103.66 Aligned_cols=64 Identities=27% Similarity=0.321 Sum_probs=52.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcC--CCCCCHHHHHHcCCcCCcceecC
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA--EHALDPSLAETIGVKTENLLLAQ 178 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~--e~~~~~~~~~~~g~~~~~~~~~~ 178 (271)
-+++|+.++|+||+|+|||||++.+.+...+..|.|-+-+. .+.....+-+++||.+|++.+++
T Consensus 358 ~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~ 423 (580)
T COG4618 358 ALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFD 423 (580)
T ss_pred EecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecC
Confidence 57799999999999999999999999999999997544332 23334567889999999987764
No 256
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.10 E-value=2.6e-10 Score=109.48 Aligned_cols=140 Identities=17% Similarity=0.192 Sum_probs=89.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEE-cCCC---C-CC----HHHHHHcCCcCCcceecCCCCHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI-DAEH---A-LD----PSLAETIGVKTENLLLAQPDCGEQA 185 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~-~~e~---~-~~----~~~~~~~g~~~~~~~~~~~~~~~e~ 185 (271)
-+++|++++|.|+||+|||||++.|++...+..|.|.|. +... . .. ..+.+.+++.+|+..++...++.++
T Consensus 306 ~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~ 385 (520)
T TIGR03269 306 EVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDN 385 (520)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHH
Confidence 578999999999999999999999999998888986653 3211 1 11 1234568999998776666788777
Q ss_pred HHHHHHH------Hh---cCCccEEEEcc-----hhhhcCCCccCCccchhhHHHHHHHHH-------------------
Q 024152 186 LSLVDTL------IR---SGSVDVVVVDS-----VAALVPKGELDGEMGDAHMAMQARLMS------------------- 232 (271)
Q Consensus 186 ~~~~~~l------~~---~~~~~lvvID~-----l~~~~~~~~l~~~~g~~~~~~~~~~l~------------------- 232 (271)
+.....+ .. ..-+..+-++. +.... ...++ .|++|+...++++.
T Consensus 386 l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-~~~LS--gGq~qrv~laral~~~p~lLllDEPt~~LD~~~ 462 (520)
T TIGR03269 386 LTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKY-PDELS--EGERHRVALAQVLIKEPRIVILDEPTGTMDPIT 462 (520)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCC-hhhCC--HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 6542110 00 00011111111 11111 12334 38999999998873
Q ss_pred --HHHHHHHHHHhhcCcEEEEEccccc
Q 024152 233 --QALRKLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 233 --~~~r~L~~lake~~~~Vi~~sql~~ 257 (271)
...+.|..++++.+.+||+++|...
T Consensus 463 ~~~l~~~l~~l~~~~g~tvi~vsHd~~ 489 (520)
T TIGR03269 463 KVDVTHSILKAREEMEQTFIIVSHDMD 489 (520)
T ss_pred HHHHHHHHHHHHHHcCcEEEEEeCCHH
Confidence 2334455555677999999999764
No 257
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.10 E-value=2e-10 Score=103.59 Aligned_cols=144 Identities=15% Similarity=0.111 Sum_probs=86.4
Q ss_pred HHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC-------------------CCHHHHHH
Q 024152 106 ALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA-------------------LDPSLAET 166 (271)
Q Consensus 106 ~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~-------------------~~~~~~~~ 166 (271)
.|+.+.- -+++|++++|+|+||+|||||++.|++...+..|.|.+ ++... ....+++.
T Consensus 41 ~L~~vsl--~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (320)
T PRK13631 41 ALNNISY--TFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQV-GDIYIGDKKNNHELITNPYSKKIKNFKELRRR 117 (320)
T ss_pred ceeeeEE--EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEE-CCEEcccccccccccccccccccchHHHHHhc
Confidence 3444433 67799999999999999999999999999999998654 33211 11245667
Q ss_pred cCCcCCcc--eecCCCCHHHHHHHHHHHH--------h--cCCccEEEEc-chhhhcCCCccCCccchhhHHHHHHHHH-
Q 024152 167 IGVKTENL--LLAQPDCGEQALSLVDTLI--------R--SGSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMS- 232 (271)
Q Consensus 167 ~g~~~~~~--~~~~~~~~~e~~~~~~~l~--------~--~~~~~lvvID-~l~~~~~~~~l~~~~g~~~~~~~~~~l~- 232 (271)
+++.+|+. .++. .++.+++.+..... . ..-+..+-++ .+.... ...++ .|++|+...++++.
T Consensus 118 ig~v~Q~~~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-~~~LS--gGqkqRvaiAraL~~ 193 (320)
T PRK13631 118 VSMVFQFPEYQLFK-DTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERS-PFGLS--GGQKRRVAIAGILAI 193 (320)
T ss_pred EEEEEECchhcccc-chHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCC-cccCC--HHHHHHHHHHHHHHc
Confidence 89998875 3333 36666554321100 0 0001111121 111111 12233 48899999998883
Q ss_pred --------------------HHHHHHHHHHhhcCcEEEEEccccc
Q 024152 233 --------------------QALRKLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 233 --------------------~~~r~L~~lake~~~~Vi~~sql~~ 257 (271)
.+...|..+. +.+.|||+++|-..
T Consensus 194 ~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~-~~g~TiiivtHd~~ 237 (320)
T PRK13631 194 QPEILIFDEPTAGLDPKGEHEMMQLILDAK-ANNKTVFVITHTME 237 (320)
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHH-HCCCEEEEEecCHH
Confidence 2333444433 45899999999764
No 258
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.09 E-value=2.7e-10 Score=109.05 Aligned_cols=73 Identities=18% Similarity=0.183 Sum_probs=53.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC-CCH--HHHHHcCCcCCcceecCCCCHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA-LDP--SLAETIGVKTENLLLAQPDCGEQALS 187 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~-~~~--~~~~~~g~~~~~~~~~~~~~~~e~~~ 187 (271)
-+++|++++|.|+||+|||||++.|++...+..|.|.|.+.+-. ... ...+.+++.+|+..++...++.+++.
T Consensus 27 ~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~ 102 (510)
T PRK09700 27 TVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLY 102 (510)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcHHHHhh
Confidence 56799999999999999999999999999998998654332211 111 12335788888876666667766654
No 259
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.09 E-value=4.7e-10 Score=107.44 Aligned_cols=139 Identities=16% Similarity=0.162 Sum_probs=83.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC-CCH-HH-HHHcCCcCCcceecCCCCHHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA-LDP-SL-AETIGVKTENLLLAQPDCGEQALSLVDT 191 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~-~~~-~~-~~~~g~~~~~~~~~~~~~~~e~~~~~~~ 191 (271)
-+++|++++|+||||+|||||++.|++...+..|.|.+.+.... ... .+ ...+++.+|+...+...++.+++.+...
T Consensus 33 ~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~ 112 (510)
T PRK15439 33 TLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLP 112 (510)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhcccc
Confidence 57799999999999999999999999999999898654332211 111 12 2347888888777766777776543210
Q ss_pred H----Hh--cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHHhh
Q 024152 192 L----IR--SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSLSL 244 (271)
Q Consensus 192 l----~~--~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~lake 244 (271)
. .. ..-++.+-++...... ...++ .|++|+...++++. .....|..++ +
T Consensus 113 ~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--gG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~ 188 (510)
T PRK15439 113 KRQASMQKMKQLLAALGCQLDLDSS-AGSLE--VADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELL-A 188 (510)
T ss_pred cchHHHHHHHHHHHHcCCCccccCC-hhhCC--HHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-H
Confidence 0 00 0001111111111111 12333 37888888888773 2233344443 4
Q ss_pred cCcEEEEEccccc
Q 024152 245 SQTILIFINQVFS 257 (271)
Q Consensus 245 ~~~~Vi~~sql~~ 257 (271)
.+.+||+++|...
T Consensus 189 ~g~tiiivtHd~~ 201 (510)
T PRK15439 189 QGVGIVFISHKLP 201 (510)
T ss_pred CCCEEEEEeCCHH
Confidence 5899999999753
No 260
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.09 E-value=1.2e-10 Score=100.45 Aligned_cols=71 Identities=24% Similarity=0.300 Sum_probs=53.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC--CC-HHHHHHcCCcCCcceecCCCCHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA--LD-PSLAETIGVKTENLLLAQPDCGEQALS 187 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~--~~-~~~~~~~g~~~~~~~~~~~~~~~e~~~ 187 (271)
-+++|++++|.|+||+|||||++.+++...+.+|.|.| +.+.. .. ..+.+.+++.+|+..++. .++.+++.
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~-~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~ 97 (237)
T cd03252 24 RIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLV-DGHDLALADPAWLRRQVGVVLQENVLFN-RSIRDNIA 97 (237)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEE-CCeehHhcCHHHHhhcEEEEcCCchhcc-chHHHHhh
Confidence 57799999999999999999999999999999998655 43321 11 234556888888865553 46666554
No 261
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.09 E-value=4.4e-10 Score=99.23 Aligned_cols=73 Identities=23% Similarity=0.290 Sum_probs=51.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhc--------CCeEEEEcCCCCC--C-HHHHHHcCCcCCcceecCCCCHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ--------GGYCVFIDAEHAL--D-PSLAETIGVKTENLLLAQPDCGE 183 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~--------~g~v~~~~~e~~~--~-~~~~~~~g~~~~~~~~~~~~~~~ 183 (271)
-+++|++++|.|+||+|||||++.|++...+. .|.|.+ +.+... . ..+.+.+++.+|........++.
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~-~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~ 101 (272)
T PRK13547 23 RIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTL-NGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAR 101 (272)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEE-CCEEcccCCHHHHHhhcEEecccCCCCCCCcHH
Confidence 56799999999999999999999999998876 777554 433221 1 23445577888775433345666
Q ss_pred HHHHH
Q 024152 184 QALSL 188 (271)
Q Consensus 184 e~~~~ 188 (271)
+++..
T Consensus 102 e~l~~ 106 (272)
T PRK13547 102 EIVLL 106 (272)
T ss_pred HHHhh
Confidence 65543
No 262
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.08 E-value=2.7e-10 Score=109.30 Aligned_cols=140 Identities=14% Similarity=0.199 Sum_probs=86.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHH--hhcCCeEEEEc----------------------CCC-------CC--C-
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEA--QRQGGYCVFID----------------------AEH-------AL--D- 160 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~--~~~~g~v~~~~----------------------~e~-------~~--~- 160 (271)
-+.+|++++|+|+||||||||++.+++.. .+..|.|.|.+ ... .. .
T Consensus 22 ~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~ 101 (520)
T TIGR03269 22 TIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSD 101 (520)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccccccccccccccchhhhccCH
Confidence 57799999999999999999999999997 57888866541 100 00 0
Q ss_pred ---HHHHHHcCCcCCc-ceecCCCCHHHHHHHHHHHHh----------cCCccEEEEcchhhhcCCCccCCccchhhHHH
Q 024152 161 ---PSLAETIGVKTEN-LLLAQPDCGEQALSLVDTLIR----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAM 226 (271)
Q Consensus 161 ---~~~~~~~g~~~~~-~~~~~~~~~~e~~~~~~~l~~----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~ 226 (271)
..+.+.+++.+|+ ..++...++.+.+.+...... ..-+..+-++.+.... -..+++ |++||..
T Consensus 102 ~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~LSg--Gq~qrv~ 178 (520)
T TIGR03269 102 KLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHI-ARDLSG--GEKQRVV 178 (520)
T ss_pred HHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcC-cccCCH--HHHHHHH
Confidence 1234457888886 455555677666554221100 0001112222221111 133444 8999999
Q ss_pred HHHHHH---------------------HHHHHHHHHHhhcCcEEEEEccccc
Q 024152 227 QARLMS---------------------QALRKLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 227 ~~~~l~---------------------~~~r~L~~lake~~~~Vi~~sql~~ 257 (271)
.++++. .....|.+++++.+.+||+++|-..
T Consensus 179 iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~ 230 (520)
T TIGR03269 179 LARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPE 230 (520)
T ss_pred HHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH
Confidence 998873 2334456666777999999999763
No 263
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.08 E-value=3.2e-10 Score=108.38 Aligned_cols=74 Identities=23% Similarity=0.354 Sum_probs=55.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC-CH--HHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-DP--SLAETIGVKTENLLLAQPDCGEQALSL 188 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~-~~--~~~~~~g~~~~~~~~~~~~~~~e~~~~ 188 (271)
-+.+|++++|+||||+|||||++.+++...+..|.|.|.+.+-.. .. ...+.+++.+|...++...++.+++.+
T Consensus 26 ~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~ 102 (501)
T PRK10762 26 NVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFL 102 (501)
T ss_pred EEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhh
Confidence 567999999999999999999999999999999986554322111 11 123457888888776666777776654
No 264
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.08 E-value=6.1e-10 Score=97.46 Aligned_cols=73 Identities=16% Similarity=0.177 Sum_probs=53.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCeEEEEcCCCCC-----CHHHHHHcCCcCCcceecCCCCHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHAL-----DPSLAETIGVKTENLLLAQPDCGEQ 184 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~-----~~g~v~~~~~e~~~-----~~~~~~~~g~~~~~~~~~~~~~~~e 184 (271)
-+++|++++|.|+||+|||||++.|++...+ ..|.|.| +..... ...+.+.+++.+|....+. .++.+
T Consensus 34 ~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~-~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e 111 (258)
T PRK14268 34 QIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSI-EGEDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYD 111 (258)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEE-CCEEcccccchHHHHhhhEEEEecCCccCc-ccHHH
Confidence 5779999999999999999999999998764 5787554 332211 1234566888888876665 67777
Q ss_pred HHHHH
Q 024152 185 ALSLV 189 (271)
Q Consensus 185 ~~~~~ 189 (271)
++.+.
T Consensus 112 nl~~~ 116 (258)
T PRK14268 112 NVAYG 116 (258)
T ss_pred HHHHH
Confidence 76543
No 265
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.08 E-value=5.2e-10 Score=97.87 Aligned_cols=60 Identities=27% Similarity=0.279 Sum_probs=44.9
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCC-----CC-CCH-H----HHHHcCCcCCcc
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE-----HA-LDP-S----LAETIGVKTENL 174 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e-----~~-~~~-~----~~~~~g~~~~~~ 174 (271)
-+.+|++++|.|+||+|||||++.+++...+..|.|.|.+.. .. ... . +...+++.+|+.
T Consensus 28 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~ 98 (258)
T PRK11701 28 DLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHP 98 (258)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCc
Confidence 467999999999999999999999999999999986554432 11 111 1 233578888875
No 266
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.08 E-value=8.8e-10 Score=94.86 Aligned_cols=72 Identities=24% Similarity=0.355 Sum_probs=53.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCC--CCCHHHHHHcCCcCCcceecCCCCHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH--ALDPSLAETIGVKTENLLLAQPDCGEQALS 187 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~--~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~ 187 (271)
-+++|++++|.|+||+|||||++.+++...+..|.|.+.+... .....+++.+++.+|+..++. .++.+++.
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~ 97 (234)
T cd03251 24 DIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFN-DTVAENIA 97 (234)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeecc-ccHHHHhh
Confidence 5779999999999999999999999999999999865433211 111244567888888876654 46666554
No 267
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.07 E-value=3e-10 Score=96.84 Aligned_cols=140 Identities=16% Similarity=0.213 Sum_probs=82.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC-------HHHHHHcCCcCCcceecCCCCHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-------PSLAETIGVKTENLLLAQPDCGEQALS 187 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~-------~~~~~~~g~~~~~~~~~~~~~~~e~~~ 187 (271)
-+++|++++|.|+||+|||||+..|++...+..|.|. ++.+.... ....+.+++.+|...++ ..++.+++.
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~-~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~t~~~nl~ 100 (218)
T cd03290 23 RIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVH-WSNKNESEPSFEATRSRNRYSVAYAAQKPWLL-NATVEENIT 100 (218)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEE-ECCcccccccccccchhhcceEEEEcCCCccc-cccHHHHHh
Confidence 5669999999999999999999999999988889865 44332111 12234578888877655 356666554
Q ss_pred HHHHH---HhcCCccEEEEcchhhh----------cCCCccCCccchhhHHHHHHHHHH--------------------H
Q 024152 188 LVDTL---IRSGSVDVVVVDSVAAL----------VPKGELDGEMGDAHMAMQARLMSQ--------------------A 234 (271)
Q Consensus 188 ~~~~l---~~~~~~~lvvID~l~~~----------~~~~~l~~~~g~~~~~~~~~~l~~--------------------~ 234 (271)
..... ....-...+-++..... .....++ .|++|+...++++.. .
T Consensus 101 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS--~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~ 178 (218)
T cd03290 101 FGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLS--GGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDH 178 (218)
T ss_pred hcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCC--HHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHH
Confidence 32110 00000011111110000 0012233 388888888888732 1
Q ss_pred HHH--HHHHHhhcCcEEEEEcccccc
Q 024152 235 LRK--LSHSLSLSQTILIFINQVFSI 258 (271)
Q Consensus 235 ~r~--L~~lake~~~~Vi~~sql~~~ 258 (271)
+.. +...+++.+.++|+++|-...
T Consensus 179 l~~~~ll~~~~~~~~tii~~sH~~~~ 204 (218)
T cd03290 179 LMQEGILKFLQDDKRTLVLVTHKLQY 204 (218)
T ss_pred HHHHHHHHHHhcCCCEEEEEeCChHH
Confidence 222 334456678999999997643
No 268
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=99.07 E-value=3.1e-09 Score=93.54 Aligned_cols=133 Identities=20% Similarity=0.298 Sum_probs=91.5
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHHh----------hcCCeEEEEcCCCCCCH------HHHHHcCCcCCcceecCC
Q 024152 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQ----------RQGGYCVFIDAEHALDP------SLAETIGVKTENLLLAQP 179 (271)
Q Consensus 116 l~~G~li~I~G~~G~GKTtl~~~ia~~~~----------~~~g~v~~~~~e~~~~~------~~~~~~g~~~~~~~~~~~ 179 (271)
+..|-..+|+|++|+||||+++.++-.++ +..|+|+|++.|..... ..+..+|+.+.+++..+.
T Consensus 86 fr~g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsPadvrn~dl 165 (402)
T COG3598 86 FRKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSPADVRNMDL 165 (402)
T ss_pred hhcCeeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCChHhhhheec
Confidence 34788888899999999999988776554 35678999999877653 346678888877665544
Q ss_pred CCHH------HHH--HHHHHH---HhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcE
Q 024152 180 DCGE------QAL--SLVDTL---IRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTI 248 (271)
Q Consensus 180 ~~~~------e~~--~~~~~l---~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~ 248 (271)
++++ +.+ .+.+++ ..+..++++|||+.-..+. |+.....+ +..+.+.+.++|.+++|.
T Consensus 166 td~~Gaa~~~d~l~pkl~rRfek~~~Q~rp~~vViDp~v~f~~--------G~s~s~vq---v~~fi~~~rkla~~l~ca 234 (402)
T COG3598 166 TDVSGAADESDVLSPKLYRRFEKILEQKRPDFVVIDPFVAFYE--------GKSISDVQ---VKEFIKKTRKLARNLECA 234 (402)
T ss_pred cccccCCCccccccHHHHHHHHHHHHHhCCCeEEEcchhhhcC--------CccchhHH---HHHHHHHHHHHHHhcCCe
Confidence 2211 111 223332 3456799999999988874 33322233 345555555669999999
Q ss_pred EEEEccccccc
Q 024152 249 LIFINQVFSIN 259 (271)
Q Consensus 249 Vi~~sql~~~~ 259 (271)
||++.|..+..
T Consensus 235 Iiy~hHtskss 245 (402)
T COG3598 235 IIYIHHTSKSS 245 (402)
T ss_pred EEEEecccccc
Confidence 99999988654
No 269
>PRK13409 putative ATPase RIL; Provisional
Probab=99.07 E-value=2.8e-10 Score=110.51 Aligned_cols=129 Identities=16% Similarity=0.192 Sum_probs=80.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHh
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 194 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~ 194 (271)
-+.+|++++|.|+||+|||||++.+++...+..|.|.+ + ..+++.+|........++.+++........
T Consensus 361 ~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~-~----------~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~ 429 (590)
T PRK13409 361 EIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDP-E----------LKISYKPQYIKPDYDGTVEDLLRSITDDLG 429 (590)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE-e----------eeEEEecccccCCCCCcHHHHHHHHhhhcC
Confidence 67899999999999999999999999999988887654 2 135666666555455566666544321100
Q ss_pred -----cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHHhhcCcE
Q 024152 195 -----SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSLSLSQTI 248 (271)
Q Consensus 195 -----~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~lake~~~~ 248 (271)
..-+..+-++.+.... -..+++ |++|+...++++. ...+.|.+++++.+.+
T Consensus 430 ~~~~~~~~L~~l~l~~~~~~~-~~~LSG--Ge~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~t 506 (590)
T PRK13409 430 SSYYKSEIIKPLQLERLLDKN-VKDLSG--GELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREAT 506 (590)
T ss_pred hHHHHHHHHHHCCCHHHHhCC-cccCCH--HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCE
Confidence 0001111111111111 123333 7777777777762 3444555667777999
Q ss_pred EEEEccccc
Q 024152 249 LIFINQVFS 257 (271)
Q Consensus 249 Vi~~sql~~ 257 (271)
||+++|-..
T Consensus 507 viivsHD~~ 515 (590)
T PRK13409 507 ALVVDHDIY 515 (590)
T ss_pred EEEEeCCHH
Confidence 999999753
No 270
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.07 E-value=8.1e-10 Score=96.28 Aligned_cols=72 Identities=18% Similarity=0.251 Sum_probs=52.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHh-----hcCCeEEEEcCCCCC----C-HHHHHHcCCcCCcceecCCCCHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQ-----RQGGYCVFIDAEHAL----D-PSLAETIGVKTENLLLAQPDCGEQ 184 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~-----~~~g~v~~~~~e~~~----~-~~~~~~~g~~~~~~~~~~~~~~~e 184 (271)
-+++|++++|.|+||+|||||++.+++... +.+|.|.+ +.+... . ..+.+.+++.+|+...+. .++.+
T Consensus 28 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~-~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e 105 (253)
T PRK14242 28 EFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILL-DGENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFE 105 (253)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEE-CCEEccccccCHHHHhhcEEEEecCCCCCc-CcHHH
Confidence 566999999999999999999999999864 36777554 433221 1 234567889998876665 47777
Q ss_pred HHHH
Q 024152 185 ALSL 188 (271)
Q Consensus 185 ~~~~ 188 (271)
++.+
T Consensus 106 nl~~ 109 (253)
T PRK14242 106 NVAY 109 (253)
T ss_pred HHHH
Confidence 6654
No 271
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.06 E-value=6.2e-10 Score=97.60 Aligned_cols=142 Identities=13% Similarity=0.144 Sum_probs=83.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhc-----CCeEEEEcCCCC---CC-HHHHHHcCCcCCcceecCCCCHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-----GGYCVFIDAEHA---LD-PSLAETIGVKTENLLLAQPDCGEQA 185 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~-----~g~v~~~~~e~~---~~-~~~~~~~g~~~~~~~~~~~~~~~e~ 185 (271)
-+++|++++|+|+||+|||||+..+++...+. +|.+.|.+..-. .. ..+.+.+++.+++..++. .++.++
T Consensus 29 ~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~en 107 (261)
T PRK14258 29 EIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDN 107 (261)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCccCc-ccHHHH
Confidence 56799999999999999999999999998864 566554432211 11 234556788888766555 677766
Q ss_pred HHHHHHHHh-----------cCCccEEEEc-chhhhcCCCccCCccchhhHHHHHHHHH---------------------
Q 024152 186 LSLVDTLIR-----------SGSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMS--------------------- 232 (271)
Q Consensus 186 ~~~~~~l~~-----------~~~~~lvvID-~l~~~~~~~~l~~~~g~~~~~~~~~~l~--------------------- 232 (271)
+........ ..-+..+-++ .+..........-+.|++++...++++.
T Consensus 108 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~ 187 (261)
T PRK14258 108 VAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASM 187 (261)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHH
Confidence 654321100 0000011000 1111111111122348888888888873
Q ss_pred HHHHHHHHHHhhcCcEEEEEccccc
Q 024152 233 QALRKLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 233 ~~~r~L~~lake~~~~Vi~~sql~~ 257 (271)
...+.|..++++.+.+||+++|...
T Consensus 188 ~l~~~l~~l~~~~~~tiiivsH~~~ 212 (261)
T PRK14258 188 KVESLIQSLRLRSELTMVIVSHNLH 212 (261)
T ss_pred HHHHHHHHHHHhCCCEEEEEECCHH
Confidence 2233444444556899999999764
No 272
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.06 E-value=1.5e-10 Score=104.63 Aligned_cols=130 Identities=18% Similarity=0.200 Sum_probs=83.5
Q ss_pred EEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC-CHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHh--------
Q 024152 124 IYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-DPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR-------- 194 (271)
Q Consensus 124 I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~-~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~-------- 194 (271)
|.|+||+|||||++.|++...+.+|.|.| +.+... .....+.+++.+|+..+++..++.+++.+......
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i-~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~ 79 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIML-DGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKP 79 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEE-CCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHH
Confidence 57999999999999999999999998654 433221 11234568899999888877888888765432110
Q ss_pred --cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHHhhcCcEEEE
Q 024152 195 --SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSLSLSQTILIF 251 (271)
Q Consensus 195 --~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~lake~~~~Vi~ 251 (271)
..-++.+-++.+.... ...++ .|++|+...++++. .....|+++.++.+.|||+
T Consensus 80 ~~~~~l~~~~l~~~~~~~-~~~LS--gGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiii 156 (325)
T TIGR01187 80 RVLEALRLVQLEEFADRK-PHQLS--GGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVF 156 (325)
T ss_pred HHHHHHHHcCCcchhcCC-hhhCC--HHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 0001111122211111 12333 38899999998883 2334555566677999999
Q ss_pred Eccccc
Q 024152 252 INQVFS 257 (271)
Q Consensus 252 ~sql~~ 257 (271)
++|...
T Consensus 157 vTHd~~ 162 (325)
T TIGR01187 157 VTHDQE 162 (325)
T ss_pred EeCCHH
Confidence 999763
No 273
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.06 E-value=5.7e-10 Score=106.35 Aligned_cols=74 Identities=19% Similarity=0.249 Sum_probs=54.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC-C--HHHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-D--PSLAETIGVKTENLLLAQPDCGEQALSL 188 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~-~--~~~~~~~g~~~~~~~~~~~~~~~e~~~~ 188 (271)
-+++|++++|.|+||+|||||++.+++...+..|.|.|.+..... . ..+.+.+++.+|+...+...++.+++.+
T Consensus 20 ~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~ 96 (491)
T PRK10982 20 KVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVMDNMWL 96 (491)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHHHHhhc
Confidence 577999999999999999999999999998988986544322111 1 1234457888887766666677666543
No 274
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.06 E-value=6.7e-10 Score=97.71 Aligned_cols=72 Identities=17% Similarity=0.211 Sum_probs=53.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCeEEEEcCCCCC-----CHHHHHHcCCcCCcceecCCCCHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHAL-----DPSLAETIGVKTENLLLAQPDCGEQ 184 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~-----~~g~v~~~~~e~~~-----~~~~~~~~g~~~~~~~~~~~~~~~e 184 (271)
-+++|++++|.|+||+|||||++.|++...+ ..|.|. ++.+... ...+.+.+++.+|....+. .++.+
T Consensus 41 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~-~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e 118 (267)
T PRK14235 41 DIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKIT-LDGEDIYDPRLDVVELRARVGMVFQKPNPFP-KSIYE 118 (267)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEE-ECCEECcccccchHHHhhceEEEecCCCCCC-CcHHH
Confidence 5679999999999999999999999999864 678755 4443221 1234566888888876665 37777
Q ss_pred HHHH
Q 024152 185 ALSL 188 (271)
Q Consensus 185 ~~~~ 188 (271)
++.+
T Consensus 119 nl~~ 122 (267)
T PRK14235 119 NVAY 122 (267)
T ss_pred HHHH
Confidence 6654
No 275
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.06 E-value=1.7e-10 Score=112.95 Aligned_cols=139 Identities=19% Similarity=0.200 Sum_probs=87.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCC------C--C---CC-HH---H-HHHcCCcCCcc--ee
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE------H--A---LD-PS---L-AETIGVKTENL--LL 176 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e------~--~---~~-~~---~-~~~~g~~~~~~--~~ 176 (271)
-+++|++++|+|+||+|||||++.|++...+.+|.+.+-+.. . . .. .. + .+.+++.+|.. .+
T Consensus 38 ~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l 117 (623)
T PRK10261 38 SLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSL 117 (623)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEEEEeCchhhc
Confidence 677999999999999999999999999998888875542210 0 0 01 11 1 13578888875 34
Q ss_pred cCCCCHHHHHHHHHHHHhc-----------CCccEEEEcc---hhhhcCCCccCCccchhhHHHHHHHHH----------
Q 024152 177 AQPDCGEQALSLVDTLIRS-----------GSVDVVVVDS---VAALVPKGELDGEMGDAHMAMQARLMS---------- 232 (271)
Q Consensus 177 ~~~~~~~e~~~~~~~l~~~-----------~~~~lvvID~---l~~~~~~~~l~~~~g~~~~~~~~~~l~---------- 232 (271)
.+..++.+++....+.... .-+..+-+.. ....+ ..++++ |++||+..++++.
T Consensus 118 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~-~~~LSg--Gq~QRv~iA~AL~~~P~lLllDE 194 (623)
T PRK10261 118 NPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRY-PHQLSG--GMRQRVMIAMALSCRPAVLIADE 194 (623)
T ss_pred CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCC-CccCCH--HHHHHHHHHHHHhCCCCEEEEeC
Confidence 5556777766543221000 0011222211 11111 233444 8999999999883
Q ss_pred -----------HHHHHHHHHHhhcCcEEEEEcccc
Q 024152 233 -----------QALRKLSHSLSLSQTILIFINQVF 256 (271)
Q Consensus 233 -----------~~~r~L~~lake~~~~Vi~~sql~ 256 (271)
++...|+++.++.+++||+++|-.
T Consensus 195 Pt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl 229 (623)
T PRK10261 195 PTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDM 229 (623)
T ss_pred CCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH
Confidence 344455566667799999999975
No 276
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.06 E-value=1.5e-09 Score=87.74 Aligned_cols=117 Identities=23% Similarity=0.329 Sum_probs=76.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC---CHHHHHHcCCcCCcceecCCCCH-H-HHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLLLAQPDCG-E-QALSLV 189 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~---~~~~~~~~g~~~~~~~~~~~~~~-~-e~~~~~ 189 (271)
-+++|++++|.|+||+|||||+..+++...+..|.+ +++.+... ...+...+++.+| .+. + ..+.++
T Consensus 21 ~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i-~~~~~~~~~~~~~~~~~~i~~~~q-------lS~G~~~r~~l~ 92 (157)
T cd00267 21 TLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEI-LIDGKDIAKLPLEELRRRIGYVPQ-------LSGGQRQRVALA 92 (157)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEE-EECCEEcccCCHHHHHhceEEEee-------CCHHHHHHHHHH
Confidence 466999999999999999999999999988888875 45443221 2234455666665 333 2 334455
Q ss_pred HHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcccccc
Q 024152 190 DTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFSI 258 (271)
Q Consensus 190 ~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~~ 258 (271)
+.+. ..++++++|....-.+. . . ...+.+.++.+ .+. +.++++++|....
T Consensus 93 ~~l~--~~~~i~ilDEp~~~lD~---------~---~-~~~l~~~l~~~---~~~-~~tii~~sh~~~~ 142 (157)
T cd00267 93 RALL--LNPDLLLLDEPTSGLDP---------A---S-RERLLELLREL---AEE-GRTVIIVTHDPEL 142 (157)
T ss_pred HHHh--cCCCEEEEeCCCcCCCH---------H---H-HHHHHHHHHHH---HHC-CCEEEEEeCCHHH
Confidence 5554 35899999987755420 0 1 12233333333 333 7899999997643
No 277
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.05 E-value=5.4e-09 Score=86.36 Aligned_cols=122 Identities=16% Similarity=0.208 Sum_probs=70.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC---------HHHHHHcCCcCCcc-eecCCCCH--
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---------PSLAETIGVKTENL-LLAQPDCG-- 182 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~---------~~~~~~~g~~~~~~-~~~~~~~~-- 182 (271)
-+++|++++|.||||+|||||++.++. ..|.+.+.+...... ......+++..... ......+.
T Consensus 17 ~i~~G~~~~l~G~nG~GKSTLl~~il~----~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgGq 92 (176)
T cd03238 17 SIPLNVLVVVTGVSGSGKSTLVNEGLY----ASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGE 92 (176)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhh----cCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHHH
Confidence 567999999999999999999998752 455544432211111 12334444432111 11122232
Q ss_pred HHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccc
Q 024152 183 EQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 183 ~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~ 257 (271)
.+.+.+++.+....+++++++|+...-.+ . ...+.+.+.++.+ . +.+.+||+++|...
T Consensus 93 ~qrl~laral~~~~~p~llLlDEPt~~LD---------~----~~~~~l~~~l~~~---~-~~g~tvIivSH~~~ 150 (176)
T cd03238 93 LQRVKLASELFSEPPGTLFILDEPSTGLH---------Q----QDINQLLEVIKGL---I-DLGNTVILIEHNLD 150 (176)
T ss_pred HHHHHHHHHHhhCCCCCEEEEeCCcccCC---------H----HHHHHHHHHHHHH---H-hCCCEEEEEeCCHH
Confidence 24456667666544599999999776553 0 1112233333333 3 46999999999864
No 278
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.05 E-value=9.7e-10 Score=96.14 Aligned_cols=74 Identities=16% Similarity=0.159 Sum_probs=54.9
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCeEEEEcCCCC----C-CHHHHHHcCCcCCcceecCCCCHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHA----L-DPSLAETIGVKTENLLLAQPDCGEQ 184 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~-----~~g~v~~~~~e~~----~-~~~~~~~~g~~~~~~~~~~~~~~~e 184 (271)
-+++|++++|.|+||+|||||++.+++...+ .+|.|.+ +.... . ...+++.+++.+|+..++...++.+
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~-~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~ 104 (258)
T PRK14241 26 NIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLL-DGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRD 104 (258)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEE-CCEeccccccChHHHhcceEEEccccccCCCCcHHH
Confidence 5779999999999999999999999998864 5777554 43321 1 1234566888888877776677877
Q ss_pred HHHHH
Q 024152 185 ALSLV 189 (271)
Q Consensus 185 ~~~~~ 189 (271)
++...
T Consensus 105 nl~~~ 109 (258)
T PRK14241 105 NVVAG 109 (258)
T ss_pred HHHHH
Confidence 76543
No 279
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.05 E-value=5.9e-10 Score=97.13 Aligned_cols=40 Identities=30% Similarity=0.376 Sum_probs=35.9
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEc
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID 154 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~ 154 (271)
-+++|++++|.|+||+|||||++.+++...+..|.|.|.+
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g 64 (253)
T TIGR02323 25 DLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIM 64 (253)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEec
Confidence 5679999999999999999999999999999999866544
No 280
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.05 E-value=9.8e-10 Score=87.82 Aligned_cols=78 Identities=19% Similarity=0.337 Sum_probs=57.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHH--HHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGE--QALSLVDTL 192 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~--e~~~~~~~l 192 (271)
-+++|++++|.|+||+|||||++.+++...+..|.|.+ +.. ..+++.++ .+.. +.+.+++.+
T Consensus 22 ~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~-~~~--------~~i~~~~~-------lS~G~~~rv~laral 85 (144)
T cd03221 22 TINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTW-GST--------VKIGYFEQ-------LSGGEKMRLALAKLL 85 (144)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEE-CCe--------EEEEEEcc-------CCHHHHHHHHHHHHH
Confidence 56799999999999999999999999999998888544 431 23444444 3433 344556666
Q ss_pred HhcCCccEEEEcchhhhc
Q 024152 193 IRSGSVDVVVVDSVAALV 210 (271)
Q Consensus 193 ~~~~~~~lvvID~l~~~~ 210 (271)
. .+++++++|....-.
T Consensus 86 ~--~~p~illlDEP~~~L 101 (144)
T cd03221 86 L--ENPNLLLLDEPTNHL 101 (144)
T ss_pred h--cCCCEEEEeCCccCC
Confidence 5 478999999876554
No 281
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.05 E-value=8.3e-10 Score=108.61 Aligned_cols=71 Identities=24% Similarity=0.242 Sum_probs=54.9
Q ss_pred HHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCC--CCCCHHHHHHcCCcCCcceec
Q 024152 105 FALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE--HALDPSLAETIGVKTENLLLA 177 (271)
Q Consensus 105 ~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e--~~~~~~~~~~~g~~~~~~~~~ 177 (271)
+.|+.+-- .+++|+.++|+|++|||||||++.+.+...|..|.+.+-+.. ......+++.+|+.+|+..++
T Consensus 487 ~vL~~isL--~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf 559 (709)
T COG2274 487 PVLEDLSL--EIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLF 559 (709)
T ss_pred chhhceeE--EeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhh
Confidence 34554443 799999999999999999999999999999999985543322 222347788999999876554
No 282
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.05 E-value=2.5e-10 Score=98.59 Aligned_cols=71 Identities=17% Similarity=0.210 Sum_probs=51.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC---CCHHHHHHcCCcCCcceecCCCCHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA---LDPSLAETIGVKTENLLLAQPDCGEQALS 187 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~---~~~~~~~~~g~~~~~~~~~~~~~~~e~~~ 187 (271)
-+++|++++|.|+||+|||||++.|++...+..|.|.|.+ +.. ....+.+.+++.+|+..++. .++.+++.
T Consensus 25 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g-~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~ 98 (238)
T cd03249 25 TIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDG-VDIRDLNLRWLRSQIGLVSQEPVLFD-GTIAENIR 98 (238)
T ss_pred EecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECC-EehhhcCHHHHHhhEEEECCchhhhh-hhHHHHhh
Confidence 5779999999999999999999999999999999865443 221 11233456888888765543 35555443
No 283
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.05 E-value=7.2e-10 Score=106.15 Aligned_cols=73 Identities=18% Similarity=0.217 Sum_probs=52.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC-CH--HHHHHcCCcCCcc---eecCCCCHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-DP--SLAETIGVKTENL---LLAQPDCGEQALS 187 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~-~~--~~~~~~g~~~~~~---~~~~~~~~~e~~~ 187 (271)
-+++|++++|.|+||+|||||++.|++...+++|.|.|.+..-.. .. .+.+.+++.+|.. .++...++.+++.
T Consensus 285 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~ 363 (510)
T PRK09700 285 SVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMA 363 (510)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhc
Confidence 577999999999999999999999999998889986554322111 11 2344578888863 3445566666554
No 284
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.04 E-value=1.5e-09 Score=94.56 Aligned_cols=71 Identities=17% Similarity=0.161 Sum_probs=48.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC---CHHHHHHcCCcCCcceecCCCCHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLLLAQPDCGEQALS 187 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~---~~~~~~~~g~~~~~~~~~~~~~~~e~~~ 187 (271)
-+++|++++|.|+||+|||||++.+++... ..|.|. ++.+... ...+.+.+++.+|........++.+++.
T Consensus 18 ~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~-~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~ 91 (248)
T PRK03695 18 EVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQ-FAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYLT 91 (248)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEE-ECCEecCcCCHHHHhhheEEecccCccCCCccHHHHHH
Confidence 577999999999999999999999999874 577754 4443221 1233455777777654444445554443
No 285
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.04 E-value=6.5e-10 Score=106.25 Aligned_cols=139 Identities=17% Similarity=0.208 Sum_probs=84.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC-CC--HHHHHHcCCcCCcceecCCCCHHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA-LD--PSLAETIGVKTENLLLAQPDCGEQALSLVDT 191 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~-~~--~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~ 191 (271)
.+++|++++|.|+||+|||||++.|++...+..|.|.|.+.... .. ..+.+.+++.+|+..++...++.+++.+...
T Consensus 26 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~ 105 (501)
T PRK11288 26 DCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQL 105 (501)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhccc
Confidence 67799999999999999999999999999888998654332211 11 1234568888888766666677666554210
Q ss_pred --H---------Hh--cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHH
Q 024152 192 --L---------IR--SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRK 237 (271)
Q Consensus 192 --l---------~~--~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~ 237 (271)
. .. ..-+..+-++...... ...++ .|++|+...++++. .....
T Consensus 106 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--gGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~ 182 (501)
T PRK11288 106 PHKGGIVNRRLLNYEAREQLEHLGVDIDPDTP-LKYLS--IGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRV 182 (501)
T ss_pred ccccCCCCHHHHHHHHHHHHHHcCCCCCcCCc-hhhCC--HHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHH
Confidence 0 00 0001111111110111 12233 38888888888873 23334
Q ss_pred HHHHHhhcCcEEEEEccccc
Q 024152 238 LSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 238 L~~lake~~~~Vi~~sql~~ 257 (271)
|..+ ++.+.+||+++|...
T Consensus 183 l~~~-~~~g~tiiiitHd~~ 201 (501)
T PRK11288 183 IREL-RAEGRVILYVSHRME 201 (501)
T ss_pred HHHH-HhCCCEEEEEeCCHH
Confidence 4443 345899999999753
No 286
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.04 E-value=2.2e-10 Score=98.34 Aligned_cols=70 Identities=29% Similarity=0.336 Sum_probs=50.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC---CHHHHHHcCCcCCcceecCCCCHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLLLAQPDCGEQAL 186 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~---~~~~~~~~g~~~~~~~~~~~~~~~e~~ 186 (271)
-+++|++++|.|+||+|||||++.+++...+..|.+. ++..... ...+.+.+++.+|+..++.. ++.+++
T Consensus 25 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~-~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~~ 97 (229)
T cd03254 25 SIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQIL-IDGIDIRDISRKSLRSMIGVVLQDTFLFSG-TIMENI 97 (229)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEE-ECCEeHHHcCHHHHhhhEEEecCCchhhhh-HHHHHH
Confidence 5679999999999999999999999999988889854 4432211 12345567888887654432 444443
No 287
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=1.4e-09 Score=89.20 Aligned_cols=149 Identities=19% Similarity=0.163 Sum_probs=91.6
Q ss_pred cCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCH-HHHHHcCCcCCcceecCCC
Q 024152 102 TGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP-SLAETIGVKTENLLLAQPD 180 (271)
Q Consensus 102 Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~-~~~~~~g~~~~~~~~~~~~ 180 (271)
+-|.+|+..+. +|+++.|.||||+|||||++.+++...|..|.|.|-+..-...+ ...+.+-|.-...-+-..+
T Consensus 16 ~lf~~L~f~l~-----~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eL 90 (209)
T COG4133 16 TLFSDLSFTLN-----AGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTEL 90 (209)
T ss_pred eeecceeEEEc-----CCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccchh
Confidence 45667776555 99999999999999999999999999999999666543322222 2344444554555556677
Q ss_pred CHHHHHHHHHHHHhcCC-------ccEEEEcchhhhcCCCccCCccchhhHHHHHHHH--------------------HH
Q 024152 181 CGEQALSLVDTLIRSGS-------VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLM--------------------SQ 233 (271)
Q Consensus 181 ~~~e~~~~~~~l~~~~~-------~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l--------------------~~ 233 (271)
++.|++.+..++....+ +..|-+..+..+. -..+ +.|+++|+..+|.. ..
T Consensus 91 Ta~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp-~~~L--SAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a 167 (209)
T COG4133 91 TALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLP-VGQL--SAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVA 167 (209)
T ss_pred hHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccc-hhhc--chhHHHHHHHHHHHcCCCCceeecCcccccCHHHHH
Confidence 88888888766543210 1112122222111 1112 33777777777765 12
Q ss_pred HHHHHHHHHhhcCcEEEEEcccccc
Q 024152 234 ALRKLSHSLSLSQTILIFINQVFSI 258 (271)
Q Consensus 234 ~~r~L~~lake~~~~Vi~~sql~~~ 258 (271)
.+..+...-...|--|++++|....
T Consensus 168 ~l~~l~~~H~~~GGiVllttHq~l~ 192 (209)
T COG4133 168 LLTALMAAHAAQGGIVLLTTHQPLP 192 (209)
T ss_pred HHHHHHHHHhcCCCEEEEecCCccC
Confidence 3334433334567788888886543
No 288
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.04 E-value=9e-10 Score=104.95 Aligned_cols=60 Identities=20% Similarity=0.149 Sum_probs=45.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC-CC-HHHHHHcCCcCCcc
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA-LD-PSLAETIGVKTENL 174 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~-~~-~~~~~~~g~~~~~~ 174 (271)
-+++|++++|.|+||+|||||++.+++...+..|.+.+.+.+.. .. ..+.+.+++.+|+.
T Consensus 25 ~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~ 86 (490)
T PRK10938 25 TLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRN 86 (490)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhceeccCc
Confidence 57799999999999999999999999999998898654332211 11 23345678888764
No 289
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.04 E-value=1.7e-09 Score=93.23 Aligned_cols=71 Identities=27% Similarity=0.372 Sum_probs=52.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC---CCHHHHHHcCCcCCcceecCCCCHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA---LDPSLAETIGVKTENLLLAQPDCGEQALS 187 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~---~~~~~~~~~g~~~~~~~~~~~~~~~e~~~ 187 (271)
-+++|++++|.|+||+|||||++.|++...+..|.|.+ +.+.. ....+.+.+++.+++..++. .++.+++.
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~-~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~ 96 (236)
T cd03253 23 TIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILI-DGQDIREVTLDSLRRAIGVVPQDTVLFN-DTIGYNIR 96 (236)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEE-CCEEhhhCCHHHHHhhEEEECCCChhhc-chHHHHHh
Confidence 57799999999999999999999999999999998654 43221 12234556888888866553 46665554
No 290
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.04 E-value=4e-10 Score=95.06 Aligned_cols=39 Identities=33% Similarity=0.569 Sum_probs=35.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEE
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI 153 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~ 153 (271)
-+++|++++|.|+||+|||||++.|++...++.|.|.+.
T Consensus 27 ~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~ 65 (204)
T cd03250 27 EVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVP 65 (204)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEc
Confidence 567999999999999999999999999999999986543
No 291
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.03 E-value=8.9e-10 Score=95.70 Aligned_cols=72 Identities=13% Similarity=0.194 Sum_probs=53.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHh---hcCCeEEEEcCCCCC---CHHHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQ---RQGGYCVFIDAEHAL---DPSLAETIGVKTENLLLAQPDCGEQALSL 188 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~---~~~g~v~~~~~e~~~---~~~~~~~~g~~~~~~~~~~~~~~~e~~~~ 188 (271)
-+++|++++|+|+||+|||||++.+++... +..|.|. ++++... ...+.+.+++.+|...++. .++.+++.+
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~-~~g~~i~~~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~ 101 (246)
T PRK14269 24 QIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVE-IEGKDVKNQDVVALRKNVGMVFQQPNVFV-KSIYENISY 101 (246)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEE-ECCEecccCCHHHHhhhEEEEecCCcccc-ccHHHHhhh
Confidence 566999999999999999999999999874 4678755 4443221 1244567889998876665 577777654
No 292
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.03 E-value=8.2e-10 Score=96.74 Aligned_cols=72 Identities=22% Similarity=0.294 Sum_probs=52.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHh-----hcCCeEEEEcCCCCC----C-HHHHHHcCCcCCcceecCCCCHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQ-----RQGGYCVFIDAEHAL----D-PSLAETIGVKTENLLLAQPDCGEQ 184 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~-----~~~g~v~~~~~e~~~----~-~~~~~~~g~~~~~~~~~~~~~~~e 184 (271)
-+++|++++|.|+||+|||||++.|++... +..|.|.+ +.+... . ..+.+.+++.+|+...+. .++.+
T Consensus 35 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~-~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~ 112 (260)
T PRK10744 35 DIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILL-DGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYD 112 (260)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEE-CCEEccccccchHHHhcceEEEecCCccCc-CcHHH
Confidence 677999999999999999999999999876 35787554 432221 1 234567888888876555 57766
Q ss_pred HHHH
Q 024152 185 ALSL 188 (271)
Q Consensus 185 ~~~~ 188 (271)
++..
T Consensus 113 nl~~ 116 (260)
T PRK10744 113 NIAF 116 (260)
T ss_pred HHhh
Confidence 6554
No 293
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.03 E-value=9.3e-10 Score=95.99 Aligned_cols=73 Identities=16% Similarity=0.210 Sum_probs=53.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhc-----CCeEEEEcCCCC----CC-HHHHHHcCCcCCcceecCCCCHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-----GGYCVFIDAEHA----LD-PSLAETIGVKTENLLLAQPDCGEQ 184 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~-----~g~v~~~~~e~~----~~-~~~~~~~g~~~~~~~~~~~~~~~e 184 (271)
-+++|++++|.|+||+|||||++.+++...+. .|.|.| +.+.. .. ..+.+.+++.+|+...+. .++.+
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~-~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e 106 (254)
T PRK14273 29 KILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIY-EGKNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYD 106 (254)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEE-CCEecccccccHHHHhhceEEEeecccccc-CcHHH
Confidence 56799999999999999999999999998763 677554 43321 11 234566889988876663 67777
Q ss_pred HHHHH
Q 024152 185 ALSLV 189 (271)
Q Consensus 185 ~~~~~ 189 (271)
++.+.
T Consensus 107 ni~~~ 111 (254)
T PRK14273 107 NISYG 111 (254)
T ss_pred HHHHH
Confidence 66543
No 294
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.03 E-value=9.9e-10 Score=95.66 Aligned_cols=73 Identities=19% Similarity=0.268 Sum_probs=53.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhc-----CCeEEEEcCCCCC----C-HHHHHHcCCcCCcceecCCCCHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-----GGYCVFIDAEHAL----D-PSLAETIGVKTENLLLAQPDCGEQ 184 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~-----~g~v~~~~~e~~~----~-~~~~~~~g~~~~~~~~~~~~~~~e 184 (271)
-+++|++++|.|+||+|||||++.+++...+. .|.|. ++.+... . ..+.+.+++.+|+..+++ .++.+
T Consensus 26 ~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~-~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e 103 (251)
T PRK14249 26 DFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVL-LDNENIYSPNLDVVNLRKRVGMVFQQPNPFP-KSIFD 103 (251)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEE-ECCEEccccccChHHhhceEEEEecCCccCc-CcHHH
Confidence 56699999999999999999999999998876 47654 4443221 1 234567889999877665 37777
Q ss_pred HHHHH
Q 024152 185 ALSLV 189 (271)
Q Consensus 185 ~~~~~ 189 (271)
++.+.
T Consensus 104 nl~~~ 108 (251)
T PRK14249 104 NVAFG 108 (251)
T ss_pred HHhhH
Confidence 66543
No 295
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.03 E-value=6.5e-10 Score=98.08 Aligned_cols=59 Identities=15% Similarity=0.207 Sum_probs=42.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcc
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENL 174 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~ 174 (271)
-+++|++++|.|+||+|||||++.|++...+..|.|.+ +++..........+++.+|+.
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~-~g~~i~~~~~~~~i~~v~q~~ 87 (272)
T PRK15056 29 TVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISI-LGQPTRQALQKNLVAYVPQSE 87 (272)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE-CCEEhHHhhccceEEEecccc
Confidence 56699999999999999999999999999888888554 433221111122466766654
No 296
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.03 E-value=1.5e-09 Score=94.42 Aligned_cols=72 Identities=25% Similarity=0.326 Sum_probs=47.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHH--HhhcCCeEEEEcCCCCC--CH-HHHH-HcCCcCCcceecCCCCHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAE--AQRQGGYCVFIDAEHAL--DP-SLAE-TIGVKTENLLLAQPDCGEQALS 187 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~--~~~~~g~v~~~~~e~~~--~~-~~~~-~~g~~~~~~~~~~~~~~~e~~~ 187 (271)
-+++|++++|.|+||+|||||++.|++. ..+.+|.|.+ +..... .. .+.+ .+++.+|+...+...+..+++.
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~-~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~ 106 (252)
T CHL00131 29 SINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILF-KGESILDLEPEERAHLGIFLAFQYPIEIPGVSNADFLR 106 (252)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEE-CCEEcccCChhhhheeeEEEEeccccccccccHHHHHH
Confidence 5779999999999999999999999997 3567888554 432211 11 1111 2455666655555556665544
No 297
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.03 E-value=6.4e-10 Score=91.74 Aligned_cols=137 Identities=18% Similarity=0.130 Sum_probs=90.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHh
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 194 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~ 194 (271)
++.+|+++.+.||+|||||||++.+|+...|..|.+...+. ....+ ...-|+++|+..+.+..++-++.++..++..
T Consensus 27 ~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r-~i~gP--gaergvVFQ~~~LlPWl~~~dNvafgL~l~G 103 (259)
T COG4525 27 TIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGR-RIEGP--GAERGVVFQNEALLPWLNVIDNVAFGLQLRG 103 (259)
T ss_pred eecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCE-eccCC--CccceeEeccCccchhhHHHHHHHHHHHhcC
Confidence 78899999999999999999999999999999887554331 11111 1234789999888888888887766433210
Q ss_pred ----------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHH---------------------HHHHHHHHHh
Q 024152 195 ----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQ---------------------ALRKLSHSLS 243 (271)
Q Consensus 195 ----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~---------------------~~r~L~~lak 243 (271)
..-+.+|-+......+ --++++ |++||+-.+|+++- +-..|..+++
T Consensus 104 i~k~~R~~~a~q~l~~VgL~~~~~~~-i~qLSG--GmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~ 180 (259)
T COG4525 104 IEKAQRREIAHQMLALVGLEGAEHKY-IWQLSG--GMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQ 180 (259)
T ss_pred CCHHHHHHHHHHHHHHhCcccccccc-eEeecc--hHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHH
Confidence 0111122221111111 123333 88889888888742 2224566789
Q ss_pred hcCcEEEEEccccc
Q 024152 244 LSQTILIFINQVFS 257 (271)
Q Consensus 244 e~~~~Vi~~sql~~ 257 (271)
+.|..+++++|--.
T Consensus 181 ~tgk~~lliTH~ie 194 (259)
T COG4525 181 ETGKQVLLITHDIE 194 (259)
T ss_pred HhCCeEEEEeccHH
Confidence 99999999999653
No 298
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.02 E-value=1.1e-09 Score=97.40 Aligned_cols=72 Identities=19% Similarity=0.296 Sum_probs=52.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHh-----hcCCeEEEEcCCCC----CC-HHHHHHcCCcCCcceecCCCCHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQ-----RQGGYCVFIDAEHA----LD-PSLAETIGVKTENLLLAQPDCGEQ 184 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~-----~~~g~v~~~~~e~~----~~-~~~~~~~g~~~~~~~~~~~~~~~e 184 (271)
-+++|++++|.|+||+|||||++.|++... +..|.|.| +.+.. .. ..+++.+++.+|+..++.. ++.+
T Consensus 61 ~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i-~G~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~e 138 (285)
T PRK14254 61 DIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTF-RGKNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYD 138 (285)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEE-CCEEccccccchHhhhccEEEEecCCccCcC-CHHH
Confidence 466999999999999999999999999876 46787554 33221 11 2345678888888765553 7777
Q ss_pred HHHH
Q 024152 185 ALSL 188 (271)
Q Consensus 185 ~~~~ 188 (271)
++..
T Consensus 139 nl~~ 142 (285)
T PRK14254 139 NVAY 142 (285)
T ss_pred HHHH
Confidence 6654
No 299
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.02 E-value=1.1e-09 Score=105.29 Aligned_cols=68 Identities=26% Similarity=0.352 Sum_probs=53.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCC---CCCCHHHHHHcCCcCCcceecCCCCHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE---HALDPSLAETIGVKTENLLLAQPDCGEQA 185 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e---~~~~~~~~~~~g~~~~~~~~~~~~~~~e~ 185 (271)
-+++|+.++|+||+|+|||||++.+++...+++|.+. +++. .. ...+++.+++.+|+..+++. +..|+
T Consensus 357 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~-i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~-TI~eN 427 (529)
T TIGR02868 357 DLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVT-LDGVSVSSL-QDELRRRISVFAQDAHLFDT-TVRDN 427 (529)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE-ECCEEhhhH-HHHHHhheEEEccCcccccc-cHHHH
Confidence 6789999999999999999999999999999999855 4432 23 45677889999998776643 34443
No 300
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.02 E-value=2.7e-10 Score=111.48 Aligned_cols=146 Identities=13% Similarity=0.101 Sum_probs=93.7
Q ss_pred HHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhc---CCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCH
Q 024152 106 ALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ---GGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCG 182 (271)
Q Consensus 106 ~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~---~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~ 182 (271)
-|+.+.+ -+++|++++|.||||+|||||++.+++...+. .|.| ++++.......+.+.+++.+|+..+.+..++
T Consensus 40 iL~~vs~--~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i-~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV 116 (617)
T TIGR00955 40 LLKNVSG--VAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSV-LLNGMPIDAKEMRAISAYVQQDDLFIPTLTV 116 (617)
T ss_pred cccCCEE--EEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEE-EECCEECCHHHHhhhceeeccccccCccCcH
Confidence 3444443 78899999999999999999999999987653 4664 4554433334566778999999888888899
Q ss_pred HHHHHHHHHHHhcCC-------------ccEEEEcch-hhhcCC----CccCCccchhhHHHHHHHHH------------
Q 024152 183 EQALSLVDTLIRSGS-------------VDVVVVDSV-AALVPK----GELDGEMGDAHMAMQARLMS------------ 232 (271)
Q Consensus 183 ~e~~~~~~~l~~~~~-------------~~lvvID~l-~~~~~~----~~l~~~~g~~~~~~~~~~l~------------ 232 (271)
.|++.+...+..... ++.+-++.. ...... ..++ .|+++|...++++.
T Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LS--gGqrkRvsia~aL~~~p~vlllDEPt 194 (617)
T TIGR00955 117 REHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLS--GGERKRLAFASELLTDPPLLFCDEPT 194 (617)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcC--cchhhHHHHHHHHHcCCCEEEeeCCC
Confidence 988876543211000 001101111 111111 1233 38899999999883
Q ss_pred ---------HHHHHHHHHHhhcCcEEEEEccccc
Q 024152 233 ---------QALRKLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 233 ---------~~~r~L~~lake~~~~Vi~~sql~~ 257 (271)
...+.|+++++ .+.+||+++|...
T Consensus 195 sgLD~~~~~~l~~~L~~l~~-~g~tvi~~~hq~~ 227 (617)
T TIGR00955 195 SGLDSFMAYSVVQVLKGLAQ-KGKTIICTIHQPS 227 (617)
T ss_pred cchhHHHHHHHHHHHHHHHh-CCCEEEEEeCCCC
Confidence 34445666554 4899999988753
No 301
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.02 E-value=2.1e-09 Score=93.57 Aligned_cols=72 Identities=14% Similarity=0.192 Sum_probs=53.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCeEEEEcCCCCC----C-HHHHHHcCCcCCcceecCCCCHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHAL----D-PSLAETIGVKTENLLLAQPDCGEQ 184 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~-----~~g~v~~~~~e~~~----~-~~~~~~~g~~~~~~~~~~~~~~~e 184 (271)
-+++|++++|+|+||+|||||++.|++...+ ..|.|.+ +.+... . ....+.+++.+|+..++. .++.+
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~-~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e 103 (251)
T PRK14270 26 PIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLL-DGKNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYD 103 (251)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEE-CCEecccccccHHHHHhheEEEecCCCcCC-CcHHH
Confidence 5669999999999999999999999998764 5677554 433221 1 234567899998876665 67777
Q ss_pred HHHH
Q 024152 185 ALSL 188 (271)
Q Consensus 185 ~~~~ 188 (271)
++.+
T Consensus 104 nl~~ 107 (251)
T PRK14270 104 NVAY 107 (251)
T ss_pred HHHh
Confidence 6654
No 302
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.02 E-value=7.9e-10 Score=105.78 Aligned_cols=138 Identities=17% Similarity=0.221 Sum_probs=83.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh--cCCeEEEEcCCCCC--CH--HHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR--QGGYCVFIDAEHAL--DP--SLAETIGVKTENLLLAQPDCGEQALSL 188 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~--~~g~v~~~~~e~~~--~~--~~~~~~g~~~~~~~~~~~~~~~e~~~~ 188 (271)
-+++|++++|.||||+|||||++.|++...+ ..|.|.| +..... .. .+.+.+++.+|+..++...++.+++.+
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~-~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~ 105 (506)
T PRK13549 27 KVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIF-EGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFL 105 (506)
T ss_pred EEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEE-CCEECCCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhh
Confidence 5679999999999999999999999998875 6787554 433221 11 223458888888776666777776654
Q ss_pred HHHHH-----------h--cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HH
Q 024152 189 VDTLI-----------R--SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QA 234 (271)
Q Consensus 189 ~~~l~-----------~--~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~ 234 (271)
..... . ..-+..+-++...... ...++ .|++|+...++++. ..
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--gGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l 182 (506)
T PRK13549 106 GNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATP-VGNLG--LGQQQLVEIAKALNKQARLLILDEPTASLTESETAVL 182 (506)
T ss_pred cccccccCCcCHHHHHHHHHHHHHHcCCCCCcccc-hhhCC--HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH
Confidence 21100 0 0001111111111111 12233 38888888888873 23
Q ss_pred HHHHHHHHhhcCcEEEEEccccc
Q 024152 235 LRKLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 235 ~r~L~~lake~~~~Vi~~sql~~ 257 (271)
...|..++ +.+.+||+++|...
T Consensus 183 ~~~l~~l~-~~~~tvi~~tH~~~ 204 (506)
T PRK13549 183 LDIIRDLK-AHGIACIYISHKLN 204 (506)
T ss_pred HHHHHHHH-HCCCEEEEEeCcHH
Confidence 33444443 45899999999753
No 303
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.02 E-value=1e-09 Score=96.71 Aligned_cols=72 Identities=19% Similarity=0.347 Sum_probs=52.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHh-----hcCCeEEEEcCCCC----CC-HHHHHHcCCcCCcceecCCCCHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQ-----RQGGYCVFIDAEHA----LD-PSLAETIGVKTENLLLAQPDCGEQ 184 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~-----~~~g~v~~~~~e~~----~~-~~~~~~~g~~~~~~~~~~~~~~~e 184 (271)
-+++|++++|.|+||+|||||++.|++... +..|.|.| +.+.. .. ..+.+.+++.+|+..++. .++.+
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~-~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~e 112 (269)
T PRK14259 35 DIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLF-DGTDLYDPRVDPVEVRRRIGMVFQQPNPFP-KSIYE 112 (269)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEE-CCEEcccccCCHHHHhhceEEEccCCccch-hhHHH
Confidence 577999999999999999999999999876 46787554 43321 11 244556888888876665 37766
Q ss_pred HHHH
Q 024152 185 ALSL 188 (271)
Q Consensus 185 ~~~~ 188 (271)
++.+
T Consensus 113 nl~~ 116 (269)
T PRK14259 113 NIAF 116 (269)
T ss_pred HHhh
Confidence 6654
No 304
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.02 E-value=7.5e-10 Score=106.48 Aligned_cols=144 Identities=19% Similarity=0.171 Sum_probs=88.4
Q ss_pred HHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC--C-H---HHHHHcCCcCCcc--eecC
Q 024152 107 LDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D-P---SLAETIGVKTENL--LLAQ 178 (271)
Q Consensus 107 LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~--~-~---~~~~~~g~~~~~~--~~~~ 178 (271)
|+.+.- -+++|++++|.|+||+|||||++.+++... .+|.|.| +..... . . .+.+.+++.+|+. .++.
T Consensus 302 l~~isl--~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~-~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~ 377 (529)
T PRK15134 302 VKNISF--TLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWF-DGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNP 377 (529)
T ss_pred eeccee--EEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEE-CCEEccccchhhHHHhhhceEEEEeCchhhcCC
Confidence 444433 678999999999999999999999999874 7787554 432211 1 1 1245688888875 3455
Q ss_pred CCCHHHHHHHHHHHHh--------c----CCccEEEEc-chhhhcCCCccCCccchhhHHHHHHHHH-------------
Q 024152 179 PDCGEQALSLVDTLIR--------S----GSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMS------------- 232 (271)
Q Consensus 179 ~~~~~e~~~~~~~l~~--------~----~~~~lvvID-~l~~~~~~~~l~~~~g~~~~~~~~~~l~------------- 232 (271)
..++.+++........ . .-++.+-++ ...... -..+++ |++|+...++++.
T Consensus 378 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~LSg--G~~qrv~la~al~~~p~llllDEPt~ 454 (529)
T PRK15134 378 RLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRY-PAEFSG--GQRQRIAIARALILKPSLIILDEPTS 454 (529)
T ss_pred cccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcC-CccCCH--HHHHHHHHHHHHhCCCCEEEeeCCcc
Confidence 5677777654321100 0 001111121 111111 133443 8999999998883
Q ss_pred --------HHHHHHHHHHhhcCcEEEEEccccc
Q 024152 233 --------QALRKLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 233 --------~~~r~L~~lake~~~~Vi~~sql~~ 257 (271)
.+...|..++++.+++||+++|-..
T Consensus 455 ~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~ 487 (529)
T PRK15134 455 SLDKTVQAQILALLKSLQQKHQLAYLFISHDLH 487 (529)
T ss_pred ccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH
Confidence 2344555556667999999999763
No 305
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.02 E-value=1.1e-09 Score=104.76 Aligned_cols=139 Identities=18% Similarity=0.210 Sum_probs=83.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC-CC--HHHHHHcCCcCCcc---eecCCCCHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA-LD--PSLAETIGVKTENL---LLAQPDCGEQALSL 188 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~-~~--~~~~~~~g~~~~~~---~~~~~~~~~e~~~~ 188 (271)
-+++|++++|.|+||+|||||++.+++...+++|.|.|.+.... .. ..+++.+++.+|.. .++...++.+++..
T Consensus 274 ~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~ 353 (501)
T PRK10762 274 TLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSL 353 (501)
T ss_pred EEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhh
Confidence 57799999999999999999999999999888888655432211 11 12344688888875 34455677766543
Q ss_pred HHH-HH------------h---cCCccEEEEc-chhhhcCCCccCCccchhhHHHHHHHHH-------------------
Q 024152 189 VDT-LI------------R---SGSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMS------------------- 232 (271)
Q Consensus 189 ~~~-l~------------~---~~~~~lvvID-~l~~~~~~~~l~~~~g~~~~~~~~~~l~------------------- 232 (271)
... .. . ..-+..+-++ ...... -..++ .|++|+...++++.
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~LS--gGekqrv~lA~al~~~p~lllLDEPt~~LD~~~ 430 (501)
T PRK10762 354 TALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQA-IGLLS--GGNQQKVAIARGLMTRPKVLILDEPTRGVDVGA 430 (501)
T ss_pred hhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCc-hhhCC--HHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhH
Confidence 210 00 0 0001111111 111111 12333 38889988888873
Q ss_pred --HHHHHHHHHHhhcCcEEEEEccccc
Q 024152 233 --QALRKLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 233 --~~~r~L~~lake~~~~Vi~~sql~~ 257 (271)
...+.|..+++ .+.+||+++|...
T Consensus 431 ~~~l~~~l~~~~~-~g~tviivtHd~~ 456 (501)
T PRK10762 431 KKEIYQLINQFKA-EGLSIILVSSEMP 456 (501)
T ss_pred HHHHHHHHHHHHH-CCCEEEEEcCCHH
Confidence 23334444443 4899999999753
No 306
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.02 E-value=1.8e-09 Score=94.09 Aligned_cols=73 Identities=18% Similarity=0.221 Sum_probs=53.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHh--h---cCCeEEEEcCCCCC----C-HHHHHHcCCcCCcceecCCCCHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQ--R---QGGYCVFIDAEHAL----D-PSLAETIGVKTENLLLAQPDCGEQ 184 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~--~---~~g~v~~~~~e~~~----~-~~~~~~~g~~~~~~~~~~~~~~~e 184 (271)
-+++|++++|+|+||+|||||++.+++... + ..|.|. ++..... . ..+.+.+++.+|+...+...++.+
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~-~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 104 (252)
T PRK14256 26 DFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKIL-LDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYD 104 (252)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEE-ECCEEcccccCChHHhhccEEEEecCCCCCCcCcHHH
Confidence 567999999999999999999999999875 3 467754 4443221 1 234566888888877776677777
Q ss_pred HHHH
Q 024152 185 ALSL 188 (271)
Q Consensus 185 ~~~~ 188 (271)
++..
T Consensus 105 nl~~ 108 (252)
T PRK14256 105 NVIA 108 (252)
T ss_pred HHHh
Confidence 6653
No 307
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.01 E-value=1.7e-09 Score=94.82 Aligned_cols=72 Identities=15% Similarity=0.143 Sum_probs=52.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCeEEEEcCCCCC----C-HHHHHHcCCcCCcceecCCCCHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHAL----D-PSLAETIGVKTENLLLAQPDCGEQ 184 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~-----~~g~v~~~~~e~~~----~-~~~~~~~g~~~~~~~~~~~~~~~e 184 (271)
-+++|++++|.|+||+|||||++.+++...+ ..|.|.| +.+... . ..+.+.+++.+|+..++ ..++.+
T Consensus 30 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~-~g~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~e 107 (261)
T PRK14263 30 PIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHF-LGQDVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFD 107 (261)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEE-CCEeccccccchHhhhhceEEEecCCccc-cccHHH
Confidence 5779999999999999999999999999875 5777555 433221 1 23456688888887665 467766
Q ss_pred HHHH
Q 024152 185 ALSL 188 (271)
Q Consensus 185 ~~~~ 188 (271)
++.+
T Consensus 108 nl~~ 111 (261)
T PRK14263 108 NVAF 111 (261)
T ss_pred HHHH
Confidence 6654
No 308
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.01 E-value=9.6e-10 Score=93.81 Aligned_cols=70 Identities=21% Similarity=0.256 Sum_probs=51.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC---CCHHHHHHcCCcCCcceecCCCCHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA---LDPSLAETIGVKTENLLLAQPDCGEQAL 186 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~---~~~~~~~~~g~~~~~~~~~~~~~~~e~~ 186 (271)
-+++|++++|.|+||+|||||++.+++...+..|.|.| +.+.. ....+.+.+++.+|...++. .++.+++
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~-~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl 98 (221)
T cd03244 26 SIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILI-DGVDISKIGLHDLRSRISIIPQDPVLFS-GTIRSNL 98 (221)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEE-CCEEhHhCCHHHHhhhEEEECCCCcccc-chHHHHh
Confidence 57799999999999999999999999999999998654 43321 12244567888888766543 3554443
No 309
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.01 E-value=6.4e-10 Score=107.00 Aligned_cols=63 Identities=13% Similarity=0.155 Sum_probs=46.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQAL 186 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~ 186 (271)
-+.+|++++|.|+||+|||||++.+++...+..|.+.|.. . ..+++.+|....+...++.+.+
T Consensus 23 ~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~-~--------~~i~~~~q~~~~~~~~tv~e~l 85 (530)
T PRK15064 23 KFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDP-N--------ERLGKLRQDQFAFEEFTVLDTV 85 (530)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-C--------CEEEEEeccCCcCCCCcHHHHH
Confidence 5679999999999999999999999999988888865432 1 1355666655544445555444
No 310
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.00 E-value=1.2e-09 Score=94.99 Aligned_cols=72 Identities=14% Similarity=0.183 Sum_probs=52.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCeEEEEcCCCCC-----CHHHHHHcCCcCCcceecCCCCHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHAL-----DPSLAETIGVKTENLLLAQPDCGEQ 184 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~-----~~g~v~~~~~e~~~-----~~~~~~~~g~~~~~~~~~~~~~~~e 184 (271)
-+++|++++|.|+||+|||||++.|++...+ ..|.|. ++.+... ...+.+.+++.+|+...+. .++.+
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~-~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ 102 (250)
T PRK14240 25 DIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVL-LDGQDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYD 102 (250)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEE-ECCEEccccccchHHHhccEEEEecCCccCc-ccHHH
Confidence 5679999999999999999999999997652 467754 4443221 1234556888888876665 67766
Q ss_pred HHHH
Q 024152 185 ALSL 188 (271)
Q Consensus 185 ~~~~ 188 (271)
++..
T Consensus 103 ni~~ 106 (250)
T PRK14240 103 NVAY 106 (250)
T ss_pred HHHH
Confidence 6654
No 311
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.00 E-value=1.9e-09 Score=93.87 Aligned_cols=73 Identities=16% Similarity=0.218 Sum_probs=53.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhc-----CCeEEEEcCCCCC----C-HHHHHHcCCcCCcceecCCCCHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-----GGYCVFIDAEHAL----D-PSLAETIGVKTENLLLAQPDCGEQ 184 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~-----~g~v~~~~~e~~~----~-~~~~~~~g~~~~~~~~~~~~~~~e 184 (271)
-+++|++++|.|+||+|||||++.|++...+. .|.|. ++.+... . ..+.+.+++.+|+...+...++.+
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~-~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e 104 (252)
T PRK14272 26 DVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRIL-LDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFD 104 (252)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEE-ECCEEcccCccCHHHhhceeEEEeccCccCcCCCHHH
Confidence 56699999999999999999999999988653 57754 4443221 1 234556888888877776667777
Q ss_pred HHHH
Q 024152 185 ALSL 188 (271)
Q Consensus 185 ~~~~ 188 (271)
++..
T Consensus 105 nl~~ 108 (252)
T PRK14272 105 NVVA 108 (252)
T ss_pred HHHH
Confidence 6654
No 312
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.00 E-value=1.7e-09 Score=95.39 Aligned_cols=72 Identities=14% Similarity=0.202 Sum_probs=52.9
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHh-----hcCCeEEEEcCCCC-----CCHHHHHHcCCcCCcceecCCCCHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQ-----RQGGYCVFIDAEHA-----LDPSLAETIGVKTENLLLAQPDCGEQ 184 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~-----~~~g~v~~~~~e~~-----~~~~~~~~~g~~~~~~~~~~~~~~~e 184 (271)
-+++|++++|.|+||+|||||++.|++... +..|.|.| +.... ....+.+.+++.+|+..++. .++.+
T Consensus 46 ~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~-~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e 123 (271)
T PRK14238 46 DIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILY-RDQNIFDKSYSVEELRTNVGMVFQKPNPFP-KSIYD 123 (271)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEE-CCEEcccccccHHHHhhhEEEEecCCcccc-ccHHH
Confidence 466999999999999999999999999986 47787654 33221 11234567889898876655 37766
Q ss_pred HHHH
Q 024152 185 ALSL 188 (271)
Q Consensus 185 ~~~~ 188 (271)
++.+
T Consensus 124 ni~~ 127 (271)
T PRK14238 124 NVTY 127 (271)
T ss_pred HHHH
Confidence 6654
No 313
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.00 E-value=2.6e-09 Score=93.49 Aligned_cols=72 Identities=21% Similarity=0.235 Sum_probs=52.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHh--h---cCCeEEEEcCCCCC----C-HHHHHHcCCcCCcceecCCCCHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQ--R---QGGYCVFIDAEHAL----D-PSLAETIGVKTENLLLAQPDCGEQ 184 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~--~---~~g~v~~~~~e~~~----~-~~~~~~~g~~~~~~~~~~~~~~~e 184 (271)
-+++|++++|.|+||+|||||++.|++... + ..|.|. ++.+... . ..+.+.+++.+|+..++.. ++.+
T Consensus 34 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~-~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~e 111 (259)
T PRK14274 34 SIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMN-YNGSNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFD 111 (259)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEE-ECCEEccccccCHHHHhhceEEEecCCccccc-CHHH
Confidence 467999999999999999999999999876 3 367755 4443221 1 2345568898888766653 7766
Q ss_pred HHHH
Q 024152 185 ALSL 188 (271)
Q Consensus 185 ~~~~ 188 (271)
++.+
T Consensus 112 nl~~ 115 (259)
T PRK14274 112 NVAY 115 (259)
T ss_pred HHHh
Confidence 6654
No 314
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.99 E-value=1.5e-09 Score=103.66 Aligned_cols=73 Identities=12% Similarity=0.232 Sum_probs=52.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC-C--HHHHHHcCCcCCcce---ecCCCCHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-D--PSLAETIGVKTENLL---LAQPDCGEQALS 187 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~-~--~~~~~~~g~~~~~~~---~~~~~~~~e~~~ 187 (271)
-+++|++++|.|+||+|||||++.+++...+.+|.|.|.+..-.. . ......+++.+|... .+...++.+++.
T Consensus 275 ~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~ 353 (501)
T PRK11288 275 SVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNIN 353 (501)
T ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhc
Confidence 577999999999999999999999999998888986553322111 1 123345788888753 455566666543
No 315
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.99 E-value=3.7e-09 Score=93.00 Aligned_cols=72 Identities=17% Similarity=0.251 Sum_probs=51.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHh-----hcCCeEEEEcCCCC----CC-HHHHHHcCCcCCcceecCCCCHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQ-----RQGGYCVFIDAEHA----LD-PSLAETIGVKTENLLLAQPDCGEQ 184 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~-----~~~g~v~~~~~e~~----~~-~~~~~~~g~~~~~~~~~~~~~~~e 184 (271)
-+++|++++|.|+||+|||||++.+++... +..|.|.+ +.+.. .. ..+.+.+++.+|+...+. .++.+
T Consensus 43 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~-~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e 120 (268)
T PRK14248 43 DIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILY-EGLNILDSNINVVNLRREIGMVFQKPNPFP-KSIYN 120 (268)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEE-CCEEcccccccHHHHhccEEEEecCCccCc-ccHHH
Confidence 566999999999999999999999999764 46787554 43221 11 134556888888876654 36666
Q ss_pred HHHH
Q 024152 185 ALSL 188 (271)
Q Consensus 185 ~~~~ 188 (271)
++..
T Consensus 121 nl~~ 124 (268)
T PRK14248 121 NITH 124 (268)
T ss_pred HHHH
Confidence 5543
No 316
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=3.1e-09 Score=100.29 Aligned_cols=136 Identities=16% Similarity=0.211 Sum_probs=85.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCC--CCCCHHHHHHcCCcCCcceecCC------------C
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE--HALDPSLAETIGVKTENLLLAQP------------D 180 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e--~~~~~~~~~~~g~~~~~~~~~~~------------~ 180 (271)
-+++|+.++|+|++|||||||+..+++...+..|.+.+.+.+ ......+.+.+.+.+|+.+++.. .
T Consensus 343 t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~ 422 (559)
T COG4988 343 TIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDA 422 (559)
T ss_pred EecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcC
Confidence 577999999999999999999999999999999986655433 23334788899999988766642 1
Q ss_pred CHHHHHHHHHHHHhcCCc-cEEEE-cchhhhcCCCccCCccchhhHHHHHHHH---------------------HHHHHH
Q 024152 181 CGEQALSLVDTLIRSGSV-DVVVV-DSVAALVPKGELDGEMGDAHMAMQARLM---------------------SQALRK 237 (271)
Q Consensus 181 ~~~e~~~~~~~l~~~~~~-~lvvI-D~l~~~~~~~~l~~~~g~~~~~~~~~~l---------------------~~~~r~ 237 (271)
+.+++.+.+.+. ++ +++-- |.+..........-++|+.||...+|++ ..+...
T Consensus 423 s~e~i~~al~~a----~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~ 498 (559)
T COG4988 423 SDEEIIAALDQA----GLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQA 498 (559)
T ss_pred CHHHHHHHHHHh----cHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHH
Confidence 223333322221 11 11100 1111111111112234788888888887 234455
Q ss_pred HHHHHhhcCcEEEEEcccc
Q 024152 238 LSHSLSLSQTILIFINQVF 256 (271)
Q Consensus 238 L~~lake~~~~Vi~~sql~ 256 (271)
|.+++++ .||++++|-.
T Consensus 499 l~~l~~~--ktvl~itHrl 515 (559)
T COG4988 499 LQELAKQ--KTVLVITHRL 515 (559)
T ss_pred HHHHHhC--CeEEEEEcCh
Confidence 5555554 7999999965
No 317
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.99 E-value=2.2e-09 Score=93.33 Aligned_cols=72 Identities=18% Similarity=0.173 Sum_probs=52.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCeEEEEcCCCC----CCHHHHHHcCCcCCcceecCCCCHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHA----LDPSLAETIGVKTENLLLAQPDCGEQA 185 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~-----~~g~v~~~~~e~~----~~~~~~~~~g~~~~~~~~~~~~~~~e~ 185 (271)
-+++|++++|.|+||+|||||++.|++...+ ..|.|. ++.... ....+.+.+++.+|+...+. .++.++
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~-~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~ 102 (249)
T PRK14253 25 PIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLT-MDGEDIYGNIDVADLRIKVGMVFQKPNPFP-MSIYEN 102 (249)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEE-ECCEEcccccchHHHHhheeEEecCCCcCc-ccHHHH
Confidence 5669999999999999999999999998775 367754 443221 11244567889998876665 677666
Q ss_pred HHH
Q 024152 186 LSL 188 (271)
Q Consensus 186 ~~~ 188 (271)
+..
T Consensus 103 l~~ 105 (249)
T PRK14253 103 VAY 105 (249)
T ss_pred HHh
Confidence 654
No 318
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=98.99 E-value=3.6e-09 Score=89.47 Aligned_cols=71 Identities=17% Similarity=0.178 Sum_probs=51.9
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCC--CCCHHHHHHcCCcCCcceecCCCCHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH--ALDPSLAETIGVKTENLLLAQPDCGEQAL 186 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~--~~~~~~~~~~g~~~~~~~~~~~~~~~e~~ 186 (271)
-+++|++++|.|+||+|||||++.|++...+..|.+.|.+... .....+.+.+++.+|+..++. .++.+++
T Consensus 30 ~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~~l 102 (207)
T cd03369 30 KVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFS-GTIRSNL 102 (207)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccC-ccHHHHh
Confidence 5779999999999999999999999999999999865533211 111234566888888765554 3555554
No 319
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.99 E-value=1.5e-09 Score=103.76 Aligned_cols=139 Identities=14% Similarity=0.163 Sum_probs=83.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh--cCCeEEEEcCCCCC--CH--HHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR--QGGYCVFIDAEHAL--DP--SLAETIGVKTENLLLAQPDCGEQALSL 188 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~--~~g~v~~~~~e~~~--~~--~~~~~~g~~~~~~~~~~~~~~~e~~~~ 188 (271)
-+++|++++|+|+||+|||||++.|++...+ ..|.|.| +.+... .. ...+.+++.+|....+...++.+++.+
T Consensus 23 ~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~-~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~ 101 (500)
T TIGR02633 23 EVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYW-SGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFL 101 (500)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEE-CCEECCCCCHHHHHhCCEEEEeeccccCCCCcHHHHHHh
Confidence 6779999999999999999999999998875 5777554 432221 11 123458888888766666777776654
Q ss_pred HHHHHh--------------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------H
Q 024152 189 VDTLIR--------------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------Q 233 (271)
Q Consensus 189 ~~~l~~--------------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~ 233 (271)
...... ..-++.+-++....-.+-..++ .|++|+...++++. .
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS--gG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~ 179 (500)
T TIGR02633 102 GNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYG--GGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEI 179 (500)
T ss_pred hccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCC--HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Confidence 321100 0000111111100000012333 38899999888873 2
Q ss_pred HHHHHHHHHhhcCcEEEEEccccc
Q 024152 234 ALRKLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 234 ~~r~L~~lake~~~~Vi~~sql~~ 257 (271)
....|+.++ +.+.+||+++|...
T Consensus 180 l~~~l~~l~-~~g~tviiitHd~~ 202 (500)
T TIGR02633 180 LLDIIRDLK-AHGVACVYISHKLN 202 (500)
T ss_pred HHHHHHHHH-hCCCEEEEEeCcHH
Confidence 233344443 56899999999763
No 320
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.99 E-value=1.6e-09 Score=95.86 Aligned_cols=72 Identities=17% Similarity=0.203 Sum_probs=53.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCeEEEEcCCCCC----CHHHHHHcCCcCCcceecCCCCHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHAL----DPSLAETIGVKTENLLLAQPDCGEQA 185 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~-----~~g~v~~~~~e~~~----~~~~~~~~g~~~~~~~~~~~~~~~e~ 185 (271)
-+++|++++|.|+||+|||||++.|++...+ ..|.|.+ +.+... ...+.+.+++.+|...+++ .++.++
T Consensus 43 ~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~-~g~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~en 120 (276)
T PRK14271 43 GFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLL-GGRSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDN 120 (276)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEE-CCEEccccchhHHHhhheEEeccCCccCC-ccHHHH
Confidence 5679999999999999999999999998875 5777554 433221 1234567889998876665 577766
Q ss_pred HHH
Q 024152 186 LSL 188 (271)
Q Consensus 186 ~~~ 188 (271)
+..
T Consensus 121 i~~ 123 (276)
T PRK14271 121 VLA 123 (276)
T ss_pred HHH
Confidence 554
No 321
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=98.99 E-value=2.7e-09 Score=92.66 Aligned_cols=63 Identities=25% Similarity=0.358 Sum_probs=44.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHH--hhcCCeEEEEcCCCCC--CH-HH-HHHcCCcCCcceecC
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEA--QRQGGYCVFIDAEHAL--DP-SL-AETIGVKTENLLLAQ 178 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~--~~~~g~v~~~~~e~~~--~~-~~-~~~~g~~~~~~~~~~ 178 (271)
-+++|++++|+|+||+|||||++.+++.. .+..|.+. ++.+... .. .. ...+++.++....+.
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~-~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~ 91 (248)
T PRK09580 23 EVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVE-FKGKDLLELSPEDRAGEGIFMAFQYPVEIP 91 (248)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEE-ECCCccccCCHHHHhhcceEEEecCchhcc
Confidence 57799999999999999999999999985 47788754 5443321 11 12 234667676654433
No 322
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=98.98 E-value=1.7e-09 Score=92.62 Aligned_cols=71 Identities=23% Similarity=0.320 Sum_probs=51.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC---CHHHHHHcCCcCCcceecCCCCHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLLLAQPDCGEQALS 187 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~---~~~~~~~~g~~~~~~~~~~~~~~~e~~~ 187 (271)
-+++|++++|.|+||+|||||+..+++...+..|.|. ++.+... ...+.+.+++.+|+..++. .++.+++.
T Consensus 36 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~-~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~~nl~ 109 (226)
T cd03248 36 TLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVL-LDGKPISQYEHKYLHSKVSLVGQEPVLFA-RSLQDNIA 109 (226)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEE-ECCCchHHcCHHHHHhhEEEEecccHHHh-hhHHHHhc
Confidence 5779999999999999999999999999988999855 4443221 1234566888888765543 35555443
No 323
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.98 E-value=6.2e-10 Score=108.46 Aligned_cols=154 Identities=18% Similarity=0.140 Sum_probs=104.0
Q ss_pred HHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh---cCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHH
Q 024152 107 LDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR---QGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGE 183 (271)
Q Consensus 107 LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~---~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~ 183 (271)
|+.+.| -+.+|++++|.||+|+|||||+..+++.... .+|. +.++++....+.+.+..|++.|+-.+....|++
T Consensus 46 L~~vsg--~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~-ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~ 122 (613)
T KOG0061|consen 46 LKGVSG--TAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGE-ILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVR 122 (613)
T ss_pred eeCcEE--EEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEE-EEECCccCchhhhhheeEEEcccccccccccHH
Confidence 344444 7889999999999999999999999998874 4565 555666666667888899999998888889999
Q ss_pred HHHHHHHHHHhcCC----ccEEEEcchhhhcC----CCc-------cCCccchhhHHHHHHHH-----------------
Q 024152 184 QALSLVDTLIRSGS----VDVVVVDSVAALVP----KGE-------LDGEMGDAHMAMQARLM----------------- 231 (271)
Q Consensus 184 e~~~~~~~l~~~~~----~~lvvID~l~~~~~----~~~-------l~~~~g~~~~~~~~~~l----------------- 231 (271)
|.+.....+.-... .+...||.+....+ ++. -.-+.|+++|+..+.++
T Consensus 123 EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLD 202 (613)
T KOG0061|consen 123 ETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLD 202 (613)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcc
Confidence 88776554421110 11112222211111 000 01233788888888886
Q ss_pred ----HHHHHHHHHHHhhcCcEEEEEcccccccchhhh
Q 024152 232 ----SQALRKLSHSLSLSQTILIFINQVFSINLNKII 264 (271)
Q Consensus 232 ----~~~~r~L~~lake~~~~Vi~~sql~~~~~~~~l 264 (271)
.+..+.|+++|++ |++||++-|.-...+...+
T Consensus 203 S~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lF 238 (613)
T KOG0061|consen 203 SFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELF 238 (613)
T ss_pred hhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHH
Confidence 2456678888999 9999999887654444333
No 324
>PLN03211 ABC transporter G-25; Provisional
Probab=98.98 E-value=6.6e-10 Score=109.25 Aligned_cols=145 Identities=18% Similarity=0.192 Sum_probs=91.4
Q ss_pred HHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhc--CCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHH
Q 024152 106 ALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ--GGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGE 183 (271)
Q Consensus 106 ~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~--~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~ 183 (271)
-|+.+.. -+++|++++|.||||+|||||++.+++...+. +|.|.+ +++... ....+.+++.+|+..+....++.
T Consensus 83 iL~~vs~--~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~i-nG~~~~-~~~~~~i~yv~Q~~~l~~~lTV~ 158 (659)
T PLN03211 83 ILNGVTG--MASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILA-NNRKPT-KQILKRTGFVTQDDILYPHLTVR 158 (659)
T ss_pred eeeCCEE--EEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEE-CCEECc-hhhccceEEECcccccCCcCCHH
Confidence 3444443 78899999999999999999999999987764 677554 443222 23345689999988877778888
Q ss_pred HHHHHHHHHHhcCCc----cEEEEcchhhhcC-------------CCccCCccchhhHHHHHHHHH--------------
Q 024152 184 QALSLVDTLIRSGSV----DVVVVDSVAALVP-------------KGELDGEMGDAHMAMQARLMS-------------- 232 (271)
Q Consensus 184 e~~~~~~~l~~~~~~----~lvvID~l~~~~~-------------~~~l~~~~g~~~~~~~~~~l~-------------- 232 (271)
|.+.+...+...... ..-.++.+....+ ...++ .|+++|...++++.
T Consensus 159 E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LS--gGerqRv~ia~aL~~~P~iLlLDEPtsg 236 (659)
T PLN03211 159 ETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGIS--GGERKRVSIAHEMLINPSLLILDEPTSG 236 (659)
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcC--hhhhhHHHHHHHHHhCCCEEEEeCCCCC
Confidence 887765432100000 0000111111100 11233 48999999998873
Q ss_pred -------HHHHHHHHHHhhcCcEEEEEccccc
Q 024152 233 -------QALRKLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 233 -------~~~r~L~~lake~~~~Vi~~sql~~ 257 (271)
...+.|+++++ .+.|||+++|...
T Consensus 237 LD~~~~~~l~~~L~~l~~-~g~TvI~~sH~~~ 267 (659)
T PLN03211 237 LDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPS 267 (659)
T ss_pred cCHHHHHHHHHHHHHHHh-CCCEEEEEecCCC
Confidence 33344555444 5899999999754
No 325
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.98 E-value=4.5e-09 Score=91.42 Aligned_cols=72 Identities=17% Similarity=0.207 Sum_probs=52.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCeEEEEcCCCCCC-----HHHHHHcCCcCCcceecCCCCHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHALD-----PSLAETIGVKTENLLLAQPDCGEQ 184 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~-----~~g~v~~~~~e~~~~-----~~~~~~~g~~~~~~~~~~~~~~~e 184 (271)
-+++|++++|.|+||+|||||++.|++...+ ..|.+. ++.+.... ..+.+.+++.+|....+. .++.+
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~-i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e 102 (250)
T PRK14262 25 KIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIY-FKGQDIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYD 102 (250)
T ss_pred eecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEE-ECCEEcccchhhHHHhhhhEEEEecCCccCc-ccHHH
Confidence 5679999999999999999999999998763 677755 44432211 134567888888876665 67766
Q ss_pred HHHH
Q 024152 185 ALSL 188 (271)
Q Consensus 185 ~~~~ 188 (271)
++..
T Consensus 103 ~l~~ 106 (250)
T PRK14262 103 NVAF 106 (250)
T ss_pred HHHH
Confidence 6654
No 326
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.98 E-value=3e-09 Score=93.96 Aligned_cols=72 Identities=14% Similarity=0.209 Sum_probs=51.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCeEEEEcCCCCC----C-HHHHHHcCCcCCcceecCCCCHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHAL----D-PSLAETIGVKTENLLLAQPDCGEQ 184 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~-----~~g~v~~~~~e~~~----~-~~~~~~~g~~~~~~~~~~~~~~~e 184 (271)
-+++|++++|.|+||+|||||++.|++...+ ..|.|. ++.+... . ..+.+.+++.+|+..++. .++.+
T Consensus 42 ~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~-~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~~ 119 (274)
T PRK14265 42 KIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLL-YRDRNIYDSQINSVKLRRQVGMVFQRPNPFP-KSIYE 119 (274)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEE-ECCEecccccchhHHHhhcEEEEccCCcccc-ccHHH
Confidence 4669999999999999999999999998753 467754 4443221 1 234567888998876654 36666
Q ss_pred HHHH
Q 024152 185 ALSL 188 (271)
Q Consensus 185 ~~~~ 188 (271)
++..
T Consensus 120 nl~~ 123 (274)
T PRK14265 120 NIAF 123 (274)
T ss_pred HHHh
Confidence 6544
No 327
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.98 E-value=4.2e-09 Score=91.68 Aligned_cols=72 Identities=15% Similarity=0.143 Sum_probs=51.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHH---hh--cCCeEEEEcCCCCC-----CHHHHHHcCCcCCcceecCCCCHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEA---QR--QGGYCVFIDAEHAL-----DPSLAETIGVKTENLLLAQPDCGEQ 184 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~---~~--~~g~v~~~~~e~~~-----~~~~~~~~g~~~~~~~~~~~~~~~e 184 (271)
-+++|++++|.|+||+|||||++.|++.. .+ .+|.|.+ ++.... ...+.+.+++.+|+..++. .++.+
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~-~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~ 102 (250)
T PRK14245 25 EIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRI-DGRNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFE 102 (250)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEE-CCEecccccccHHHHhhheEEEecCCccCc-ccHHH
Confidence 46699999999999999999999999863 22 3677554 433221 1244567899998876654 47776
Q ss_pred HHHH
Q 024152 185 ALSL 188 (271)
Q Consensus 185 ~~~~ 188 (271)
++..
T Consensus 103 nl~~ 106 (250)
T PRK14245 103 NVAY 106 (250)
T ss_pred HHHH
Confidence 6654
No 328
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.98 E-value=9.2e-10 Score=105.89 Aligned_cols=140 Identities=23% Similarity=0.249 Sum_probs=84.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCeEEEEcCCCCC--C-HH---HH-HHcCCcCCcce--ecCCC
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHAL--D-PS---LA-ETIGVKTENLL--LAQPD 180 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~-----~~g~v~~~~~e~~~--~-~~---~~-~~~g~~~~~~~--~~~~~ 180 (271)
-+.+|++++|+||||+|||||++.|++...+ ..|.|.| +.+... . .. .+ +.+++.+|+.. .....
T Consensus 31 ~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~-~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~ 109 (529)
T PRK15134 31 QIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRF-HGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLH 109 (529)
T ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEE-CCEecccCCHHHHHHHhcCceEEEecCchhhcCchh
Confidence 6779999999999999999999999999875 5777554 433221 1 11 11 35888888753 33445
Q ss_pred CHHHHHHHHHHHH---------h--cCCccEEEEcchhhh--cCCCccCCccchhhHHHHHHHHH---------------
Q 024152 181 CGEQALSLVDTLI---------R--SGSVDVVVVDSVAAL--VPKGELDGEMGDAHMAMQARLMS--------------- 232 (271)
Q Consensus 181 ~~~e~~~~~~~l~---------~--~~~~~lvvID~l~~~--~~~~~l~~~~g~~~~~~~~~~l~--------------- 232 (271)
++.+++....... . ..-++.+-++.+... ..-..+++ |++|++..++++.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSg--Ge~qrv~iAraL~~~p~llllDEPt~~L 187 (529)
T PRK15134 110 TLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSG--GERQRVMIAMALLTRPELLIADEPTTAL 187 (529)
T ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCH--HHHHHHHHHHHHhcCCCEEEEcCCCCcc
Confidence 6665543211110 0 000111222221100 01133443 8999999999883
Q ss_pred ------HHHHHHHHHHhhcCcEEEEEccccc
Q 024152 233 ------QALRKLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 233 ------~~~r~L~~lake~~~~Vi~~sql~~ 257 (271)
.+...|.+++++.+.+||+++|-..
T Consensus 188 D~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~ 218 (529)
T PRK15134 188 DVSVQAQILQLLRELQQELNMGLLFITHNLS 218 (529)
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEcCcHH
Confidence 2344555555667899999999763
No 329
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=98.97 E-value=2.3e-09 Score=93.37 Aligned_cols=73 Identities=16% Similarity=0.177 Sum_probs=52.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHh--h---cCCeEEEEcCCCCC-----CHHHHHHcCCcCCcceecCCCCHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQ--R---QGGYCVFIDAEHAL-----DPSLAETIGVKTENLLLAQPDCGEQ 184 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~--~---~~g~v~~~~~e~~~-----~~~~~~~~g~~~~~~~~~~~~~~~e 184 (271)
-+++|++++|+|+||+|||||++.+++... + ..|.|.+ +.+... ...+.+.+++.+|+..++. .++.+
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~-~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e 104 (252)
T PRK14239 27 DFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVY-NGHNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYE 104 (252)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEE-CCEECcCcccchHhhhhcEEEEecCCccCc-CcHHH
Confidence 567999999999999999999999999743 4 3677554 433221 1234567889998877665 67777
Q ss_pred HHHHH
Q 024152 185 ALSLV 189 (271)
Q Consensus 185 ~~~~~ 189 (271)
++...
T Consensus 105 nl~~~ 109 (252)
T PRK14239 105 NVVYG 109 (252)
T ss_pred HHHHH
Confidence 66543
No 330
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.97 E-value=1.2e-09 Score=104.47 Aligned_cols=139 Identities=16% Similarity=0.210 Sum_probs=82.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHh-hcCCeEEEEcCCCC-CC--HHHHHHcCCcCCcc---eecCCCCHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQ-RQGGYCVFIDAEHA-LD--PSLAETIGVKTENL---LLAQPDCGEQALS 187 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~-~~~g~v~~~~~e~~-~~--~~~~~~~g~~~~~~---~~~~~~~~~e~~~ 187 (271)
-+++|++++|.|+||+|||||++.|++... +.+|.|.|.+..-. .. ..+...+++.+|+. .++...++.+++.
T Consensus 284 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~ 363 (506)
T PRK13549 284 SLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNIT 363 (506)
T ss_pred EEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhh
Confidence 678999999999999999999999999987 47888655432211 11 12334578888874 2445567766654
Q ss_pred HHH--HHHh-------------cCCccEEEEc-chhhhcCCCccCCccchhhHHHHHHHHH-------------------
Q 024152 188 LVD--TLIR-------------SGSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMS------------------- 232 (271)
Q Consensus 188 ~~~--~l~~-------------~~~~~lvvID-~l~~~~~~~~l~~~~g~~~~~~~~~~l~------------------- 232 (271)
+.. .+.. ..-+..+-++ ...... ...++ .|++|+...++++.
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~LS--gG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~ 440 (506)
T PRK13549 364 LAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELA-IARLS--GGNQQKAVLAKCLLLNPKILILDEPTRGIDVGA 440 (506)
T ss_pred hhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccc-cccCC--HHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhH
Confidence 321 0100 0001111111 010001 12333 38999999988873
Q ss_pred --HHHHHHHHHHhhcCcEEEEEccccc
Q 024152 233 --QALRKLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 233 --~~~r~L~~lake~~~~Vi~~sql~~ 257 (271)
.+.+.|..++ +.+.+||++||...
T Consensus 441 ~~~l~~~l~~l~-~~g~tvi~~sHd~~ 466 (506)
T PRK13549 441 KYEIYKLINQLV-QQGVAIIVISSELP 466 (506)
T ss_pred HHHHHHHHHHHH-HCCCEEEEECCCHH
Confidence 2223344334 45999999999764
No 331
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=98.97 E-value=3.1e-09 Score=93.31 Aligned_cols=72 Identities=14% Similarity=0.174 Sum_probs=51.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCeEEEEcCCCC-----CCHHHHHHcCCcCCcceecCCCCHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHA-----LDPSLAETIGVKTENLLLAQPDCGEQ 184 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~-----~~g~v~~~~~e~~-----~~~~~~~~~g~~~~~~~~~~~~~~~e 184 (271)
-+++|++++|.|+||+|||||++.|++...+ .+|.|. ++.+.. ....+.+.+++.+|+..++. .++.+
T Consensus 32 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~-~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e 109 (264)
T PRK14243 32 DIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVT-FHGKNLYAPDVDPVEVRRRIGMVFQKPNPFP-KSIYD 109 (264)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEE-ECCEEccccccChHHHhhhEEEEccCCcccc-ccHHH
Confidence 5669999999999999999999999998752 567754 444322 11244566888888876554 36666
Q ss_pred HHHH
Q 024152 185 ALSL 188 (271)
Q Consensus 185 ~~~~ 188 (271)
++..
T Consensus 110 nl~~ 113 (264)
T PRK14243 110 NIAY 113 (264)
T ss_pred HHHh
Confidence 6543
No 332
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.97 E-value=2.9e-09 Score=93.22 Aligned_cols=72 Identities=17% Similarity=0.204 Sum_probs=53.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCeEEEEcCCCC----CC-HHHHHHcCCcCCcceecCCCCHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHA----LD-PSLAETIGVKTENLLLAQPDCGEQ 184 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~-----~~g~v~~~~~e~~----~~-~~~~~~~g~~~~~~~~~~~~~~~e 184 (271)
-+++|++++|.|+||+|||||++.|++...+ ..|.|.+ +.... .. ..+...+++.+|+..++. .++.+
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~-~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~e 106 (259)
T PRK14260 29 DIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDF-FGQNIYDPRININRLRRQIGMVFQRPNPFP-MSIYE 106 (259)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEE-CCEeccccccchHhhhhheEEEecccccCC-ccHHH
Confidence 5679999999999999999999999998774 3677554 43221 11 234567889998877665 67777
Q ss_pred HHHH
Q 024152 185 ALSL 188 (271)
Q Consensus 185 ~~~~ 188 (271)
++..
T Consensus 107 nl~~ 110 (259)
T PRK14260 107 NVAY 110 (259)
T ss_pred HHHH
Confidence 6654
No 333
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.96 E-value=3.9e-09 Score=91.87 Aligned_cols=72 Identities=14% Similarity=0.207 Sum_probs=52.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHh-----hcCCeEEEEcCCCCC----C-HHHHHHcCCcCCcceecCCCCHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQ-----RQGGYCVFIDAEHAL----D-PSLAETIGVKTENLLLAQPDCGEQ 184 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~-----~~~g~v~~~~~e~~~----~-~~~~~~~g~~~~~~~~~~~~~~~e 184 (271)
-+++|++++|.|+||+|||||++.+++... +..|.|.+ +..... . ..+.+.+++.+|+..++. .++.+
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i-~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e 103 (251)
T PRK14251 26 DFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKF-EGQNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYD 103 (251)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEE-CCEEcccccchHHHhhccEEEEecCCccCC-CcHHH
Confidence 567999999999999999999999999886 35777554 433221 1 234556888888876664 57777
Q ss_pred HHHH
Q 024152 185 ALSL 188 (271)
Q Consensus 185 ~~~~ 188 (271)
++..
T Consensus 104 nl~~ 107 (251)
T PRK14251 104 NVAY 107 (251)
T ss_pred HHHH
Confidence 6654
No 334
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=98.96 E-value=2.8e-09 Score=93.99 Aligned_cols=72 Identities=21% Similarity=0.245 Sum_probs=52.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCeEEEEcCCCCC----C-HHHHHHcCCcCCcceecCCCCHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHAL----D-PSLAETIGVKTENLLLAQPDCGEQ 184 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~-----~~g~v~~~~~e~~~----~-~~~~~~~g~~~~~~~~~~~~~~~e 184 (271)
-+++|++++|.|+||+|||||++.+++...+ ..|.|.+ +..... . ..+.+.+++.+|+..++.. ++.+
T Consensus 47 ~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i-~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~e 124 (272)
T PRK14236 47 RIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRL-DGQNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYE 124 (272)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEE-CCEECcccccCHHHHhccEEEEecCCccCcc-cHHH
Confidence 5679999999999999999999999998763 6787554 332221 1 2345668888888766654 7777
Q ss_pred HHHH
Q 024152 185 ALSL 188 (271)
Q Consensus 185 ~~~~ 188 (271)
++..
T Consensus 125 nl~~ 128 (272)
T PRK14236 125 NVVY 128 (272)
T ss_pred HHHH
Confidence 6654
No 335
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=98.96 E-value=3.2e-09 Score=105.17 Aligned_cols=139 Identities=19% Similarity=0.200 Sum_probs=84.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC---CCHHHHHHcCCcCCcceecCCCCHHHHHHHHH-
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA---LDPSLAETIGVKTENLLLAQPDCGEQALSLVD- 190 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~---~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~- 190 (271)
-+++|+.++|+|++|||||||++.+++...+++|.|. +++... ....+++.+++.+|+..+++ .|..|++...+
T Consensus 475 ~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~-idg~~i~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~~~~~ 552 (686)
T TIGR03797 475 QIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVF-YDGQDLAGLDVQAVRRQLGVVLQNGRLMS-GSIFENIAGGAP 552 (686)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEE-ECCEEcCcCCHHHHHhccEEEccCCccCc-ccHHHHHhcCCC
Confidence 6889999999999999999999999999999999855 544322 23467788999999876654 24444433211
Q ss_pred -------HHHhcCCccEEEEc----chhhhcCCCccCCccchhhHHHHHHHHHH-----------------HHHHHHHHH
Q 024152 191 -------TLIRSGSVDVVVVD----SVAALVPKGELDGEMGDAHMAMQARLMSQ-----------------ALRKLSHSL 242 (271)
Q Consensus 191 -------~l~~~~~~~lvvID----~l~~~~~~~~l~~~~g~~~~~~~~~~l~~-----------------~~r~L~~la 242 (271)
...+.-++.- .|+ .+..........-+.|++||...+|++.. .-+.+.+..
T Consensus 553 ~~~e~i~~al~~a~l~~-~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L 631 (686)
T TIGR03797 553 LTLDEAWEAARMAGLAE-DIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESL 631 (686)
T ss_pred CCHHHHHHHHHHcCcHH-HHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence 0011011100 000 11111111111223489999999998732 122333334
Q ss_pred hhcCcEEEEEcccc
Q 024152 243 SLSQTILIFINQVF 256 (271)
Q Consensus 243 ke~~~~Vi~~sql~ 256 (271)
++.++|+|+++|-.
T Consensus 632 ~~~~~T~IiItHr~ 645 (686)
T TIGR03797 632 ERLKVTRIVIAHRL 645 (686)
T ss_pred HHhCCeEEEEecCh
Confidence 45578999999965
No 336
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.96 E-value=8.1e-09 Score=84.49 Aligned_cols=60 Identities=22% Similarity=0.267 Sum_probs=47.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC--HHHHHHcCCcCCcc
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGVKTENL 174 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~--~~~~~~~g~~~~~~ 174 (271)
.+..|+.++|.|.||+|||||++++++.+.|.+|.++|.+.+-... ..+++.+.+.+|+.
T Consensus 35 tL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDp 96 (267)
T COG4167 35 TLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDP 96 (267)
T ss_pred EecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCC
Confidence 6779999999999999999999999999999999966655332222 24566777777754
No 337
>PRK04296 thymidine kinase; Provisional
Probab=98.96 E-value=9e-09 Score=86.09 Aligned_cols=112 Identities=18% Similarity=0.240 Sum_probs=76.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcC--CC-CCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHhc
Q 024152 119 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA--EH-ALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRS 195 (271)
Q Consensus 119 G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~--e~-~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~~ 195 (271)
|.++.+.|++|+||||+++.++..+...+.+|+++.. +. .....+.+++|+...... .....++...+.. ..
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~---~~~~~~~~~~~~~--~~ 76 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIP---VSSDTDIFELIEE--EG 76 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceE---eCChHHHHHHHHh--hC
Confidence 7899999999999999999999998877778887732 21 112234555565444321 1345566555554 35
Q ss_pred CCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcccc
Q 024152 196 GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVF 256 (271)
Q Consensus 196 ~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~ 256 (271)
.+.++|+||+++.+.. +.+..+.+.++..+++|+++....
T Consensus 77 ~~~dvviIDEaq~l~~---------------------~~v~~l~~~l~~~g~~vi~tgl~~ 116 (190)
T PRK04296 77 EKIDCVLIDEAQFLDK---------------------EQVVQLAEVLDDLGIPVICYGLDT 116 (190)
T ss_pred CCCCEEEEEccccCCH---------------------HHHHHHHHHHHHcCCeEEEEecCc
Confidence 6789999999987631 112234455678899999997764
No 338
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.96 E-value=2e-09 Score=93.84 Aligned_cols=73 Identities=21% Similarity=0.267 Sum_probs=51.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHh--h---cCCeEEEEcCCCCC-----CHHHHHHcCCcCCcceecCCCCHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQ--R---QGGYCVFIDAEHAL-----DPSLAETIGVKTENLLLAQPDCGEQ 184 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~--~---~~g~v~~~~~e~~~-----~~~~~~~~g~~~~~~~~~~~~~~~e 184 (271)
-+++|++++|.|+||+|||||++.+++... + ..|.|.| +.+... .....+.+++.+|+..++. .++.+
T Consensus 28 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~-~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e 105 (253)
T PRK14261 28 SIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILY-NGENIMDSGADVVALRRKIGMVFQRPNPFP-KSIYE 105 (253)
T ss_pred EECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEE-CCEEccccccchhhhhceEEEEecCCccCc-ccHHH
Confidence 566999999999999999999999999764 2 3677554 432211 1233456888888876665 37777
Q ss_pred HHHHH
Q 024152 185 ALSLV 189 (271)
Q Consensus 185 ~~~~~ 189 (271)
++.+.
T Consensus 106 ni~~~ 110 (253)
T PRK14261 106 NVAYG 110 (253)
T ss_pred HHHhh
Confidence 66543
No 339
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.96 E-value=2.4e-09 Score=93.26 Aligned_cols=73 Identities=14% Similarity=0.085 Sum_probs=51.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHh-----hcCCeEEEEcCCCC---CC-HHHHHHcCCcCCcceecCCCCHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQ-----RQGGYCVFIDAEHA---LD-PSLAETIGVKTENLLLAQPDCGEQA 185 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~-----~~~g~v~~~~~e~~---~~-~~~~~~~g~~~~~~~~~~~~~~~e~ 185 (271)
-+.+|++++|.|+||+|||||++.|++... +..|.|.|.+.... .. ..+.+.+++.+|+...+.. ++.++
T Consensus 27 ~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~n 105 (251)
T PRK14244 27 DIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDN 105 (251)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCcccccC-CHHHH
Confidence 566999999999999999999999999875 35777655332111 11 1345678888888766553 66665
Q ss_pred HHH
Q 024152 186 LSL 188 (271)
Q Consensus 186 ~~~ 188 (271)
+.+
T Consensus 106 i~~ 108 (251)
T PRK14244 106 VAY 108 (251)
T ss_pred HHH
Confidence 544
No 340
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=98.96 E-value=4.7e-09 Score=102.03 Aligned_cols=70 Identities=23% Similarity=0.324 Sum_probs=53.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCC---CCCHHHHHHcCCcCCcceecCCCCHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH---ALDPSLAETIGVKTENLLLAQPDCGEQAL 186 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~---~~~~~~~~~~g~~~~~~~~~~~~~~~e~~ 186 (271)
-+++|+.++|+|++|+|||||++.+++...+.+|.|. +++.. .....+++.+++.+|+..+++ .|..+++
T Consensus 365 ~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~-i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni 437 (582)
T PRK11176 365 KIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEIL-LDGHDLRDYTLASLRNQVALVSQNVHLFN-DTIANNI 437 (582)
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEE-ECCEEhhhcCHHHHHhhceEEccCceeec-chHHHHH
Confidence 5789999999999999999999999999999999855 44432 222366788999999876664 3344433
No 341
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=3.4e-09 Score=89.45 Aligned_cols=73 Identities=25% Similarity=0.332 Sum_probs=49.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHH--hhcCCeEEEEcCCCCCC--H-HH-HHHcCCcCCcceecCCCCHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEA--QRQGGYCVFIDAEHALD--P-SL-AETIGVKTENLLLAQPDCGEQALSL 188 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~--~~~~g~v~~~~~e~~~~--~-~~-~~~~g~~~~~~~~~~~~~~~e~~~~ 188 (271)
-+++|++.+|.||||+|||||+..|+++- ...+|.|+ |+++.... . ++ +..+.+.+|.+.-.+-.+..+++..
T Consensus 26 ~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~-~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~ 104 (251)
T COG0396 26 TVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEIL-FDGEDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRA 104 (251)
T ss_pred eEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEE-ECCcccccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHH
Confidence 57799999999999999999999999975 46778855 55554332 1 22 2334455676655555555555543
No 342
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.95 E-value=4.5e-09 Score=102.30 Aligned_cols=62 Identities=23% Similarity=0.283 Sum_probs=49.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCC---CCCHHHHHHcCCcCCcceecC
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH---ALDPSLAETIGVKTENLLLAQ 178 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~---~~~~~~~~~~g~~~~~~~~~~ 178 (271)
-+++|+.++|+|++|+|||||++.+++.. +.+|.+. +++.. .....+++.+++.+|+..+++
T Consensus 372 ~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~-i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~ 436 (588)
T PRK11174 372 TLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLK-INGIELRELDPESWRKHLSWVGQNPQLPH 436 (588)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEE-ECCEecccCCHHHHHhheEEecCCCcCCC
Confidence 57899999999999999999999999999 8888855 54422 223467788999999876553
No 343
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.95 E-value=3.2e-09 Score=93.28 Aligned_cols=73 Identities=11% Similarity=0.054 Sum_probs=51.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCeEEEEcCCCC-----C-CHHHHHHcCCcCCcceecCCCCHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHA-----L-DPSLAETIGVKTENLLLAQPDCGE 183 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~-----~~g~v~~~~~e~~-----~-~~~~~~~~g~~~~~~~~~~~~~~~ 183 (271)
-+++|++++|+|+||+|||||++.|++...+ ..|.|.|.+.... . ...+.+.+++.+|+..++.. ++.
T Consensus 38 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~ 116 (265)
T PRK14252 38 MVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIF 116 (265)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCCcCCcc-hHH
Confidence 4669999999999999999999999998764 5677655332111 1 12345668888888666654 666
Q ss_pred HHHHH
Q 024152 184 QALSL 188 (271)
Q Consensus 184 e~~~~ 188 (271)
+++..
T Consensus 117 eni~~ 121 (265)
T PRK14252 117 ENVAY 121 (265)
T ss_pred HHHHh
Confidence 66544
No 344
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.95 E-value=2.7e-09 Score=95.75 Aligned_cols=73 Identities=18% Similarity=0.241 Sum_probs=52.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHh-----hcCCeEEEEcCCCCC-----CHHHHHHcCCcCCcceecCCCCHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQ-----RQGGYCVFIDAEHAL-----DPSLAETIGVKTENLLLAQPDCGEQ 184 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~-----~~~g~v~~~~~e~~~-----~~~~~~~~g~~~~~~~~~~~~~~~e 184 (271)
-+.+|++++|+|+||+|||||++.|++... +..|.|. ++..... ...+.+.+++.+|+..+++ .++.+
T Consensus 67 ~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~-i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~e 144 (305)
T PRK14264 67 DIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVE-LDGQDIYQDGVNLVELRKRVGMVFQSPNPFP-KSIRE 144 (305)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEE-ECCEEcccccccHHHHhhceEEEccCCcccc-ccHHH
Confidence 567999999999999999999999999875 4677754 4433221 1234567889898876554 47777
Q ss_pred HHHHH
Q 024152 185 ALSLV 189 (271)
Q Consensus 185 ~~~~~ 189 (271)
++.+.
T Consensus 145 nl~~~ 149 (305)
T PRK14264 145 NISYG 149 (305)
T ss_pred HHHhH
Confidence 66543
No 345
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=98.95 E-value=1.7e-09 Score=92.70 Aligned_cols=38 Identities=21% Similarity=0.379 Sum_probs=34.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEE
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVF 152 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~ 152 (271)
-+++|++++|.|+||+|||||++.+++...+..|.|.+
T Consensus 44 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~ 81 (224)
T cd03220 44 EVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTV 81 (224)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 56699999999999999999999999999888888554
No 346
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.95 E-value=3.1e-09 Score=94.46 Aligned_cols=73 Identities=19% Similarity=0.189 Sum_probs=52.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHh--h---cCCeEEEEcCCCCC----C-HHHHHHcCCcCCcceecCCCCHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQ--R---QGGYCVFIDAEHAL----D-PSLAETIGVKTENLLLAQPDCGEQ 184 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~--~---~~g~v~~~~~e~~~----~-~~~~~~~g~~~~~~~~~~~~~~~e 184 (271)
-+.+|++++|.|+||+|||||++.|++... + ..|.|. ++.+... . ..+.+.+++.+|+..++. .++.+
T Consensus 61 ~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~-~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~e 138 (286)
T PRK14275 61 DILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALM-FDGEDIYGKFTDEVLLRKKIGMVFQKPNPFP-KSIFD 138 (286)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEE-ECCEEhhhcccchHHhhhcEEEECCCCCCCc-cCHHH
Confidence 577999999999999999999999999754 3 778755 4433211 1 234567889888876655 37777
Q ss_pred HHHHH
Q 024152 185 ALSLV 189 (271)
Q Consensus 185 ~~~~~ 189 (271)
++.+.
T Consensus 139 nl~~~ 143 (286)
T PRK14275 139 NIAYG 143 (286)
T ss_pred HHHhH
Confidence 66543
No 347
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=98.94 E-value=6.2e-09 Score=92.46 Aligned_cols=147 Identities=16% Similarity=0.156 Sum_probs=99.9
Q ss_pred CcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCH----HHHHHcCCcCCc-ceec
Q 024152 103 GSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP----SLAETIGVKTEN-LLLA 177 (271)
Q Consensus 103 g~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~----~~~~~~g~~~~~-~~~~ 177 (271)
-|+.|+++++ |..+||++++.||.|+|||||+--.+..++.++-..+|-|.|....+ ++.+..|+.... +..+
T Consensus 259 RFpvLNk~Lk--GhR~GElTvlTGpTGsGKTTFlsEYsLDL~~QGVnTLwgSFEi~n~rla~~mL~Qyagyrl~drl~~y 336 (514)
T KOG2373|consen 259 RFPVLNKYLK--GHRPGELTVLTGPTGSGKTTFLSEYSLDLFTQGVNTLWGSFEIPNKRLAHWMLVQYAGYRLLDRLNSY 336 (514)
T ss_pred hhhHHHHHhc--cCCCCceEEEecCCCCCceeEehHhhHHHHhhhhhheeeeeecchHHHHHHHHHHHccCchHhhhhhh
Confidence 5899999998 99999999999999999999999999988888877789888877554 344555654321 1111
Q ss_pred CC--------------CCHHH----HHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHH
Q 024152 178 QP--------------DCGEQ----ALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLS 239 (271)
Q Consensus 178 ~~--------------~~~~e----~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~ 239 (271)
.. ....+ .+..+.-..--+++.-||||.||.|.+...++. .+-..+..+...+|++
T Consensus 337 ~HWadrFErlplyfmtfhgqq~~~~vi~~i~ha~yV~di~HViIDNLQFmmg~~~~~~-----Drf~~QD~iig~fR~f- 410 (514)
T KOG2373|consen 337 KHWADRFERLPLYFMTFHGQQFMEKVINEIAHAIYVEDIQHVIIDNLQFMMGQGMMAL-----DRFHLQDRIIGYFRQF- 410 (514)
T ss_pred hHHHHHHhccchHhhhhcccchHHHHHHHHHHHHHHHhhhhhhhhhHHHHhccchhcc-----chhhhHHHHHHHHHHH-
Confidence 10 11111 111111111124688899999999986443332 2233444455566666
Q ss_pred HHHhhcCcEEEEEccccccc
Q 024152 240 HSLSLSQTILIFINQVFSIN 259 (271)
Q Consensus 240 ~lake~~~~Vi~~sql~~~~ 259 (271)
|.+.+|-|-++-|.++..
T Consensus 411 --AT~nn~HvTlVvHPRKed 428 (514)
T KOG2373|consen 411 --ATQNNIHVTLVVHPRKED 428 (514)
T ss_pred --hhccceeEEEEecccccC
Confidence 999999999999998654
No 348
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=98.94 E-value=4.4e-09 Score=104.60 Aligned_cols=135 Identities=19% Similarity=0.225 Sum_probs=84.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC---CCHHHHHHcCCcCCcceecCCCCHHHHHH----
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA---LDPSLAETIGVKTENLLLAQPDCGEQALS---- 187 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~---~~~~~~~~~g~~~~~~~~~~~~~~~e~~~---- 187 (271)
-+++|+.++|+|++|+|||||++.+++...+.+|.|. +++... ....+++.+++.+|+..+++ .+..|++.
T Consensus 501 ~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~-idg~~i~~~~~~~lr~~i~~v~Q~~~lf~-gTi~eNi~l~~~ 578 (710)
T TIGR03796 501 TLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEIL-FDGIPREEIPREVLANSVAMVDQDIFLFE-GTVRDNLTLWDP 578 (710)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE-ECCEeHHHCCHHHHHhheeEEecCChhhh-ccHHHHhhCCCC
Confidence 6789999999999999999999999999999999855 444322 22367888999999876653 23443332
Q ss_pred ---------HHHHHHhcCCccEEEEc----chhhhcCCCccCCccchhhHHHHHHHHHHHH-----------------HH
Q 024152 188 ---------LVDTLIRSGSVDVVVVD----SVAALVPKGELDGEMGDAHMAMQARLMSQAL-----------------RK 237 (271)
Q Consensus 188 ---------~~~~l~~~~~~~lvvID----~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~-----------------r~ 237 (271)
.++.. ++.-. |+ .+..........-+.|++||...+|++.+.+ +.
T Consensus 579 ~~~~~~i~~al~~~----~l~~~-i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~ 653 (710)
T TIGR03796 579 TIPDADLVRACKDA----AIHDV-ITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKI 653 (710)
T ss_pred CCCHHHHHHHHHHh----CCHHH-HHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHH
Confidence 22211 11000 00 0111111111122348999999999884311 23
Q ss_pred HHHHHhhcCcEEEEEcccc
Q 024152 238 LSHSLSLSQTILIFINQVF 256 (271)
Q Consensus 238 L~~lake~~~~Vi~~sql~ 256 (271)
+.+..++.++|+|+++|-.
T Consensus 654 i~~~l~~~~~T~IiitHrl 672 (710)
T TIGR03796 654 IDDNLRRRGCTCIIVAHRL 672 (710)
T ss_pred HHHHHHhcCCEEEEEecCH
Confidence 3333345799999999975
No 349
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=98.94 E-value=4.6e-09 Score=92.40 Aligned_cols=72 Identities=15% Similarity=0.195 Sum_probs=52.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHh-----hcCCeEEEEcCCCCC-----CHHHHHHcCCcCCcceecCCCCHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQ-----RQGGYCVFIDAEHAL-----DPSLAETIGVKTENLLLAQPDCGEQ 184 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~-----~~~g~v~~~~~e~~~-----~~~~~~~~g~~~~~~~~~~~~~~~e 184 (271)
-+++|++++|.|+||+|||||++.+++... +.+|.|.+ +..... ...+.+.+++.+|...++. .++.+
T Consensus 42 ~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~-~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e 119 (267)
T PRK14237 42 QFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILY-RGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYE 119 (267)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEE-CCEEcccccCChHHHhcceEEEecCCcccc-ccHHH
Confidence 567999999999999999999999999875 46787554 433221 1234566888888876655 47777
Q ss_pred HHHH
Q 024152 185 ALSL 188 (271)
Q Consensus 185 ~~~~ 188 (271)
++..
T Consensus 120 ni~~ 123 (267)
T PRK14237 120 NITF 123 (267)
T ss_pred HHHh
Confidence 6654
No 350
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.94 E-value=3e-09 Score=101.86 Aligned_cols=72 Identities=19% Similarity=0.177 Sum_probs=49.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC-CCH--HHHHHcCCcCCcc---eecCCCCHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA-LDP--SLAETIGVKTENL---LLAQPDCGEQAL 186 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~-~~~--~~~~~~g~~~~~~---~~~~~~~~~e~~ 186 (271)
-+++|++++|.|+||+|||||++.|++...+..|.|.+.+.+-. ... .....+++.+|.. .++...++.+.+
T Consensus 285 ~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l 362 (510)
T PRK15439 285 EVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNV 362 (510)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHH
Confidence 67799999999999999999999999998888888655432211 111 2234577888763 244445555443
No 351
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=98.94 E-value=1.6e-09 Score=116.34 Aligned_cols=145 Identities=14% Similarity=0.189 Sum_probs=91.8
Q ss_pred HHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC--HHHHHHcCCcCCcceecCCCCHH
Q 024152 106 ALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGVKTENLLLAQPDCGE 183 (271)
Q Consensus 106 ~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~--~~~~~~~g~~~~~~~~~~~~~~~ 183 (271)
.|+.+.- ++++|++++|.|+||+|||||++.|++...++.|.|.+ .+..... ....+.+|+.+|...+...+++.
T Consensus 1954 aL~~ISf--~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i-~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~ 2030 (2272)
T TIGR01257 1954 AVDRLCV--GVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATV-AGKSILTNISDVHQNMGYCPQFDAIDDLLTGR 2030 (2272)
T ss_pred EEEeeEE--EEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEE-CCEECcchHHHHhhhEEEEeccccCCCCCCHH
Confidence 4555544 78899999999999999999999999999999998654 4332211 23456789999988888888888
Q ss_pred HHHHHHHHHHhcC--C--------ccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------
Q 024152 184 QALSLVDTLIRSG--S--------VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS--------------------- 232 (271)
Q Consensus 184 e~~~~~~~l~~~~--~--------~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~--------------------- 232 (271)
|.+.+..++..-. . ++.+-++...... ...+++ |++|+...++++.
T Consensus 2031 E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~-~~~LSG--GqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~ 2107 (2272)
T TIGR01257 2031 EHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRL-AGTYSG--GNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARR 2107 (2272)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHH
Confidence 8776543321000 0 0111111111111 123333 7788877777762
Q ss_pred HHHHHHHHHHhhcCcEEEEEccccc
Q 024152 233 QALRKLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 233 ~~~r~L~~lake~~~~Vi~~sql~~ 257 (271)
...+.+..+.+ .|++||+++|...
T Consensus 2108 ~l~~lL~~l~~-~g~TIILtTH~me 2131 (2272)
T TIGR01257 2108 MLWNTIVSIIR-EGRAVVLTSHSME 2131 (2272)
T ss_pred HHHHHHHHHHh-CCCEEEEEeCCHH
Confidence 22223333333 4899999999764
No 352
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.94 E-value=4.1e-09 Score=100.43 Aligned_cols=72 Identities=17% Similarity=0.247 Sum_probs=48.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh-cCCeEEEEcCCCCC--C-HHHHHHcCCcCCcceecC--CCCHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR-QGGYCVFIDAEHAL--D-PSLAETIGVKTENLLLAQ--PDCGEQAL 186 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~-~~g~v~~~~~e~~~--~-~~~~~~~g~~~~~~~~~~--~~~~~e~~ 186 (271)
-+++|++++|.|+||+|||||++.+++...+ ..|.|.|.+..... . ....+.+++.+|+..... ..+.++++
T Consensus 282 ~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~ 359 (490)
T PRK10938 282 QVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVI 359 (490)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHH
Confidence 5779999999999999999999999997544 47886655432111 1 224456888887654322 23455543
No 353
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.94 E-value=4.5e-09 Score=91.43 Aligned_cols=72 Identities=17% Similarity=0.211 Sum_probs=51.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHh--h---cCCeEEEEcCCCCC-----CHHHHHHcCCcCCcceecCCCCHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQ--R---QGGYCVFIDAEHAL-----DPSLAETIGVKTENLLLAQPDCGEQ 184 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~--~---~~g~v~~~~~e~~~-----~~~~~~~~g~~~~~~~~~~~~~~~e 184 (271)
-+++|++++|.|+||+|||||++.|++... + +.|.|.+ +..... ...+.+.+++.+|+..++.. ++.+
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~-~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~-t~~~ 102 (250)
T PRK14266 25 DIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYL-DGVDIYDPAVDVVELRKKVGMVFQKPNPFPK-SIFD 102 (250)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEE-CCEEcccccccHHHHhhheEEEecCCccCcc-hHHH
Confidence 567999999999999999999999999864 3 6787654 433221 12345678999988766553 6665
Q ss_pred HHHH
Q 024152 185 ALSL 188 (271)
Q Consensus 185 ~~~~ 188 (271)
++..
T Consensus 103 nl~~ 106 (250)
T PRK14266 103 NVAY 106 (250)
T ss_pred HHHh
Confidence 5543
No 354
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.93 E-value=7e-09 Score=90.79 Aligned_cols=74 Identities=15% Similarity=0.128 Sum_probs=53.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEE-----EEcCCCCC---CHHHHHHcCCcCCcceecCCCCHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCV-----FIDAEHAL---DPSLAETIGVKTENLLLAQPDCGEQAL 186 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~-----~~~~e~~~---~~~~~~~~g~~~~~~~~~~~~~~~e~~ 186 (271)
-+.+|++++|.|+||+|||||+..|++...+..|.|. +++..... ...+...+++.+++..++...++.+++
T Consensus 32 ~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl 111 (257)
T PRK14246 32 KIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNI 111 (257)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCccCCCCcHHHHH
Confidence 4569999999999999999999999999888775432 22222211 123455688888887776666777766
Q ss_pred HH
Q 024152 187 SL 188 (271)
Q Consensus 187 ~~ 188 (271)
..
T Consensus 112 ~~ 113 (257)
T PRK14246 112 AY 113 (257)
T ss_pred HH
Confidence 54
No 355
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.93 E-value=3e-09 Score=101.61 Aligned_cols=73 Identities=12% Similarity=0.156 Sum_probs=51.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh-cCCeEEEEcCCCC-CC--HHHHHHcCCcCCcc---eecCCCCHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR-QGGYCVFIDAEHA-LD--PSLAETIGVKTENL---LLAQPDCGEQALS 187 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~-~~g~v~~~~~e~~-~~--~~~~~~~g~~~~~~---~~~~~~~~~e~~~ 187 (271)
-+.+|++++|.|+||+|||||++.+++...+ .+|.|.|.+..-. .. ..+.+.+++.+|.. .+++..++.+++.
T Consensus 282 ~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~ 361 (500)
T TIGR02633 282 SLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNIT 361 (500)
T ss_pred EEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhc
Confidence 5779999999999999999999999999885 6888655432211 11 23345678888875 2445556665543
No 356
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=98.93 E-value=1.3e-09 Score=105.44 Aligned_cols=63 Identities=21% Similarity=0.240 Sum_probs=50.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC---CHHHHHHcCCcCCcceecC
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLLLAQ 178 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~---~~~~~~~~g~~~~~~~~~~ 178 (271)
-+++|++++|+||+|+|||||++.+++...+++|.|. +++.... ...+++.+++.+|+..+++
T Consensus 364 ~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~-~~g~~i~~~~~~~~~~~i~~v~q~~~lf~ 429 (555)
T TIGR01194 364 RIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEIL-LDGAAVSADSRDDYRDLFSAIFADFHLFD 429 (555)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-ECCEECCCCCHHHHHhhCcEEccChhhhh
Confidence 5779999999999999999999999999999999855 4443222 2356677888888765553
No 357
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=98.93 E-value=1.3e-09 Score=89.95 Aligned_cols=85 Identities=22% Similarity=0.211 Sum_probs=66.2
Q ss_pred CcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC-CC--HHH-HHHcCCcCCcceecC
Q 024152 103 GSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA-LD--PSL-AETIGVKTENLLLAQ 178 (271)
Q Consensus 103 g~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~-~~--~~~-~~~~g~~~~~~~~~~ 178 (271)
||..|+.+.- -+.+|++-+|+||||+|||||+-.|.+...++.|+|+|-+.... .. ..+ +..+|--+|.+.++.
T Consensus 17 GF~Aln~ls~--~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe 94 (249)
T COG4674 17 GFKALNDLSF--SVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFE 94 (249)
T ss_pred ceeeeeeeEE--EecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCCeehh
Confidence 7888887776 88999999999999999999999999999999998666552322 21 123 334677899998888
Q ss_pred CCCHHHHHHHH
Q 024152 179 PDCGEQALSLV 189 (271)
Q Consensus 179 ~~~~~e~~~~~ 189 (271)
..++.|++..+
T Consensus 95 ~ltV~eNLelA 105 (249)
T COG4674 95 NLTVRENLELA 105 (249)
T ss_pred hccHHHHHHHH
Confidence 88887766543
No 358
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.93 E-value=3.3e-09 Score=103.04 Aligned_cols=70 Identities=20% Similarity=0.283 Sum_probs=54.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC---CCHHHHHHcCCcCCcceecCCCCHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA---LDPSLAETIGVKTENLLLAQPDCGEQAL 186 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~---~~~~~~~~~g~~~~~~~~~~~~~~~e~~ 186 (271)
-+++|+.++|.|++|+|||||++.+++...+++|.|. +++... ....+++.+++.+|+..+++ .+..|++
T Consensus 362 ~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~-i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ti~~Ni 434 (574)
T PRK11160 362 QIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEIL-LNGQPIADYSEAALRQAISVVSQRVHLFS-ATLRDNL 434 (574)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE-ECCEEhhhCCHHHHHhheeEEcccchhhc-ccHHHHh
Confidence 6789999999999999999999999999999999855 544322 22366778999999876664 3455544
No 359
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.93 E-value=4.1e-09 Score=85.24 Aligned_cols=143 Identities=19% Similarity=0.166 Sum_probs=94.7
Q ss_pred HHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC----------HHHHHHcCCcCCcc
Q 024152 105 FALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD----------PSLAETIGVKTENL 174 (271)
Q Consensus 105 ~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~----------~~~~~~~g~~~~~~ 174 (271)
+-++.+-- .+..||++++.||+|+|||||++++-+|..+++|.+.+--.....+ .-+.+.+||..|-+
T Consensus 25 pV~~~vsl--sV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFL 102 (235)
T COG4778 25 PVLRNVSL--SVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFL 102 (235)
T ss_pred eeeeceeE--EecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHH
Confidence 44454443 6779999999999999999999999999999999854432222111 13456789999988
Q ss_pred eecCCCCHHHH---------------HHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHH--------
Q 024152 175 LLAQPDCGEQA---------------LSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLM-------- 231 (271)
Q Consensus 175 ~~~~~~~~~e~---------------~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l-------- 231 (271)
++.+....-++ ...++.+..+-++ -..|..+.| ..+++ |++||++.+|.+
T Consensus 103 RviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnl----perLW~LaP-aTFSG--GEqQRVNIaRgfivd~pILL 175 (235)
T COG4778 103 RVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNL----PERLWSLAP-ATFSG--GEQQRVNIARGFIVDYPILL 175 (235)
T ss_pred HhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCC----CHHHhcCCC-cccCC--chheehhhhhhhhccCceEE
Confidence 77665544332 2333444433222 112333332 44454 788888888876
Q ss_pred ------------HHHHHHHHHHHhhcCcEEEEEcccc
Q 024152 232 ------------SQALRKLSHSLSLSQTILIFINQVF 256 (271)
Q Consensus 232 ------------~~~~r~L~~lake~~~~Vi~~sql~ 256 (271)
....-.|.+-+|..|++++-+-|-.
T Consensus 176 LDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDe 212 (235)
T COG4778 176 LDEPTASLDATNRAVVVELIREAKARGAALVGIFHDE 212 (235)
T ss_pred ecCCcccccccchHHHHHHHHHHHhcCceEEEeeccH
Confidence 2344477778899999999998865
No 360
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.93 E-value=2.3e-09 Score=94.74 Aligned_cols=69 Identities=20% Similarity=0.232 Sum_probs=50.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC---CHHHHHHcCCcCCcceecCCCCHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLLLAQPDCGEQAL 186 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~---~~~~~~~~g~~~~~~~~~~~~~~~e~~ 186 (271)
-+++|++++|+|+||+|||||++.|++... ..|.| +++..... ...+++.+++.+|+..+++ .++.+++
T Consensus 26 ~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I-~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~-~tv~~nl 97 (275)
T cd03289 26 SISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDI-QIDGVSWNSVPLQKWRKAFGVIPQKVFIFS-GTFRKNL 97 (275)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEE-EECCEEhhhCCHHHHhhhEEEECCCcccch-hhHHHHh
Confidence 566999999999999999999999999987 67774 55554321 1245667889888876654 2444443
No 361
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=98.92 E-value=5.6e-09 Score=101.26 Aligned_cols=70 Identities=26% Similarity=0.341 Sum_probs=55.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCC---CCCHHHHHHcCCcCCcceecCCCCHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH---ALDPSLAETIGVKTENLLLAQPDCGEQAL 186 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~---~~~~~~~~~~g~~~~~~~~~~~~~~~e~~ 186 (271)
.+++|+.++|+||+||||||+++.+++...++.|.+.+ ++.. .....+++.+++.+|+..+++ .|..+++
T Consensus 351 ~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~i-dg~dI~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI 423 (567)
T COG1132 351 SIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILI-DGIDIRDISLDSLRKRIGIVSQDPLLFS-GTIRENI 423 (567)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEE-CCEehhhcCHHHHHHhccEEcccceeec-ccHHHHH
Confidence 68899999999999999999999999999999998665 4422 223467888999999887765 4444433
No 362
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.92 E-value=6.1e-09 Score=94.40 Aligned_cols=138 Identities=20% Similarity=0.200 Sum_probs=92.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC--C----HHHHHHcCCcCCccee--cCCCCHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D----PSLAETIGVKTENLLL--AQPDCGEQAL 186 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~--~----~~~~~~~g~~~~~~~~--~~~~~~~e~~ 186 (271)
-+++|+.++|+|++|||||||.+.+....... |. ++|.++... . +.+++++-++||+++- .+.+++.+++
T Consensus 309 ~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~-I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII 386 (534)
T COG4172 309 TLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GE-IRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQII 386 (534)
T ss_pred EecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ce-EEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHh
Confidence 68899999999999999999999999998877 65 555554322 1 2456778888887643 3446666665
Q ss_pred HHHHHHHh------------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHH---------------------HH
Q 024152 187 SLVDTLIR------------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLM---------------------SQ 233 (271)
Q Consensus 187 ~~~~~l~~------------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l---------------------~~ 233 (271)
..-..... ...+.-+-+|.-....-..++++ |++||...+|++ ++
T Consensus 387 ~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSG--GQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQ 464 (534)
T COG4172 387 EEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSG--GQRQRIAIARALILKPELILLDEPTSALDRSVQAQ 464 (534)
T ss_pred hhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCc--chhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHH
Confidence 43211100 01122334454332222366666 788888888876 35
Q ss_pred HHHHHHHHHhhcCcEEEEEcccc
Q 024152 234 ALRKLSHSLSLSQTILIFINQVF 256 (271)
Q Consensus 234 ~~r~L~~lake~~~~Vi~~sql~ 256 (271)
++..|+.+-++++.+-+|+||-.
T Consensus 465 vv~LLr~LQ~k~~LsYLFISHDL 487 (534)
T COG4172 465 VLDLLRDLQQKHGLSYLFISHDL 487 (534)
T ss_pred HHHHHHHHHHHhCCeEEEEeccH
Confidence 66677777899999999999965
No 363
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.91 E-value=8.8e-09 Score=90.10 Aligned_cols=36 Identities=22% Similarity=0.301 Sum_probs=33.7
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEE
Q 024152 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCV 151 (271)
Q Consensus 116 l~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~ 151 (271)
+.+|++++|.|+||+|||||++.+++...++.|.|.
T Consensus 23 i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~ 58 (255)
T cd03236 23 PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFD 58 (255)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEe
Confidence 569999999999999999999999999999999864
No 364
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.91 E-value=1.2e-09 Score=95.51 Aligned_cols=62 Identities=23% Similarity=0.274 Sum_probs=47.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC---CHHHHHHcCCcCCcceec
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLLLA 177 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~---~~~~~~~~g~~~~~~~~~ 177 (271)
-+++|++++|.|+||+|||||++.|++...+..|.|.+ +..... ...+.+.+++.+|+..++
T Consensus 43 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i-~g~~i~~~~~~~~~~~i~~v~q~~~l~ 107 (257)
T cd03288 43 YIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVI-DGIDISKLPLHTLRSRLSIILQDPILF 107 (257)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEE-CCEEhhhCCHHHHhhhEEEECCCCccc
Confidence 56799999999999999999999999999889998554 332211 124456678888776544
No 365
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.91 E-value=5.4e-09 Score=90.32 Aligned_cols=55 Identities=20% Similarity=0.296 Sum_probs=42.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC-HHHHHHcCC
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGV 169 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~-~~~~~~~g~ 169 (271)
-+|+|+++++.|+||+||||+++++.+...|.+|.|-+.+...-.. +.+.+.+++
T Consensus 46 ~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~ 101 (325)
T COG4586 46 EIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGL 101 (325)
T ss_pred ecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHH
Confidence 7889999999999999999999999999999999866555432222 244444444
No 366
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.91 E-value=2.4e-09 Score=103.09 Aligned_cols=131 Identities=18% Similarity=0.209 Sum_probs=77.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcce--ecCCCCHHHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLL--LAQPDCGEQALSLVDTL 192 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~--~~~~~~~~e~~~~~~~l 192 (271)
-+++|++++|.||||+|||||++.|++...+..|.|.+ +.. ..+++.+|... +....++.+++......
T Consensus 341 ~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~-~~~--------~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~ 411 (530)
T PRK15064 341 LLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKW-SEN--------ANIGYYAQDHAYDFENDLTLFDWMSQWRQE 411 (530)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-CCc--------eEEEEEcccccccCCCCCcHHHHHHHhccC
Confidence 67899999999999999999999999999888887554 321 24667776643 23335555544321100
Q ss_pred H--h---cCCccEEEEc-chhhhcCCCccCCccchhhHHHHHHHHH-----------------HHHHHHHHHHhhcCcEE
Q 024152 193 I--R---SGSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMS-----------------QALRKLSHSLSLSQTIL 249 (271)
Q Consensus 193 ~--~---~~~~~lvvID-~l~~~~~~~~l~~~~g~~~~~~~~~~l~-----------------~~~r~L~~lake~~~~V 249 (271)
. . ..-+..+-+. ..... +-..++ .|++|+...++++. .....+..+.++.+.+|
T Consensus 412 ~~~~~~~~~~l~~~~l~~~~~~~-~~~~LS--gGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tv 488 (530)
T PRK15064 412 GDDEQAVRGTLGRLLFSQDDIKK-SVKVLS--GGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKYEGTL 488 (530)
T ss_pred CccHHHHHHHHHHcCCChhHhcC-cccccC--HHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 0 0 0000111110 01011 112333 37888888777773 22334444556667899
Q ss_pred EEEccccc
Q 024152 250 IFINQVFS 257 (271)
Q Consensus 250 i~~sql~~ 257 (271)
|++||...
T Consensus 489 i~vsHd~~ 496 (530)
T PRK15064 489 IFVSHDRE 496 (530)
T ss_pred EEEeCCHH
Confidence 99999764
No 367
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=98.91 E-value=6.9e-09 Score=99.78 Aligned_cols=77 Identities=18% Similarity=0.207 Sum_probs=57.8
Q ss_pred HHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC---CCHHHHHHcCCcCCcceecCCCCHH
Q 024152 107 LDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA---LDPSLAETIGVKTENLLLAQPDCGE 183 (271)
Q Consensus 107 LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~---~~~~~~~~~g~~~~~~~~~~~~~~~ 183 (271)
|+.+.- -+++|+.++|+|++|+|||||++.+++...+.+|.+. ++.... ....+++.+++.+|+..+++ .+..
T Consensus 338 l~~i~l--~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~-~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~-~ti~ 413 (529)
T TIGR02857 338 LRPVSF--TVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIA-VNGVPLADADADSWRDQIAWVPQHPFLFA-GTIA 413 (529)
T ss_pred ccceeE--EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE-ECCEehhhCCHHHHHhheEEEcCCCcccC-cCHH
Confidence 444433 6789999999999999999999999999999999855 444322 22467788999999877664 3555
Q ss_pred HHHH
Q 024152 184 QALS 187 (271)
Q Consensus 184 e~~~ 187 (271)
|++.
T Consensus 414 ~Ni~ 417 (529)
T TIGR02857 414 ENIR 417 (529)
T ss_pred HHHh
Confidence 5443
No 368
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.90 E-value=5.4e-09 Score=101.18 Aligned_cols=65 Identities=14% Similarity=0.132 Sum_probs=51.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSL 188 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~ 188 (271)
-+++|++++|.||||+|||||++.|++...+.+|.|.+... ..+++.+|...+++..++.+++..
T Consensus 29 ~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~---------~~i~~v~Q~~~~~~~~tv~e~l~~ 93 (556)
T PRK11819 29 SFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPG---------IKVGYLPQEPQLDPEKTVRENVEE 93 (556)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC---------CEEEEEecCCCCCCCCcHHHHHHH
Confidence 57799999999999999999999999999898888655321 246778887766666677776543
No 369
>PLN03140 ABC transporter G family member; Provisional
Probab=98.90 E-value=9.7e-10 Score=116.02 Aligned_cols=77 Identities=19% Similarity=0.199 Sum_probs=58.5
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhc---CCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHH
Q 024152 114 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ---GGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVD 190 (271)
Q Consensus 114 GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~---~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~ 190 (271)
|-+++|++++|.||||+|||||++.+++...+. .|.|.|.+.+ .......+.+++.+|...+...+++.|.+.++.
T Consensus 186 ~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~-~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a 264 (1470)
T PLN03140 186 GIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYR-LNEFVPRKTSAYISQNDVHVGVMTVKETLDFSA 264 (1470)
T ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEe-chhhcccceeEEecccccCCCcCcHHHHHHHHH
Confidence 378999999999999999999999999998776 7776654422 111112356788888877777889999887754
Q ss_pred H
Q 024152 191 T 191 (271)
Q Consensus 191 ~ 191 (271)
+
T Consensus 265 ~ 265 (1470)
T PLN03140 265 R 265 (1470)
T ss_pred H
Confidence 3
No 370
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.90 E-value=5.6e-09 Score=94.62 Aligned_cols=72 Identities=14% Similarity=0.159 Sum_probs=52.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHh-----hcCCeEEEEcCCCCC----C-HHHHHHcCCcCCcceecCCCCHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQ-----RQGGYCVFIDAEHAL----D-PSLAETIGVKTENLLLAQPDCGEQ 184 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~-----~~~g~v~~~~~e~~~----~-~~~~~~~g~~~~~~~~~~~~~~~e 184 (271)
-+++|++++|+|+||+|||||+..+++... +..|.|. +++.... . ..+.+.+++.+|...++. .++.+
T Consensus 104 ~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~-idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~e 181 (329)
T PRK14257 104 DIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIY-FLGTNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFD 181 (329)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEE-ECCEEccccccchHhhhccEEEEecCCccCC-CcHHH
Confidence 577999999999999999999999999875 3467754 4443321 1 244567889988876664 56766
Q ss_pred HHHH
Q 024152 185 ALSL 188 (271)
Q Consensus 185 ~~~~ 188 (271)
++.+
T Consensus 182 Ni~~ 185 (329)
T PRK14257 182 NVAY 185 (329)
T ss_pred HHHh
Confidence 6654
No 371
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.89 E-value=2.3e-09 Score=85.01 Aligned_cols=140 Identities=19% Similarity=0.283 Sum_probs=87.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhc---CCeEEEEcCCC-CCCHHHHHHcCCcCCcceecCCCCHHHHHHHH-
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ---GGYCVFIDAEH-ALDPSLAETIGVKTENLLLAQPDCGEQALSLV- 189 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~---~g~v~~~~~e~-~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~- 189 (271)
.+.+|+++-|.||+|||||||.--+++.++.+ .|. ++++... ..-+.-.+.+|+.+|+..+++..++-+++.++
T Consensus 24 Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~-~~l~~~~l~~lPa~qRq~GiLFQD~lLFphlsVg~Nl~fAl 102 (213)
T COG4136 24 TIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGE-LWLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLFAL 102 (213)
T ss_pred EecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeE-EEECCeeccccchhhhheeeeecccccccccccccceEEec
Confidence 46699999999999999999999999998864 344 5555432 22334567899999998888777776554321
Q ss_pred --------HHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHH--------------------HHHHHHHH-H
Q 024152 190 --------DTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLM--------------------SQALRKLS-H 240 (271)
Q Consensus 190 --------~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l--------------------~~~~r~L~-~ 240 (271)
|+-.....++.+-+|.+..-.| ..+++ |++-|+...|.+ ....|.+. .
T Consensus 103 p~~~KG~aRr~~a~aAL~~~gL~g~f~~dP-~tlSG--GQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs 179 (213)
T COG4136 103 PATLKGNARRNAANAALERSGLDGAFHQDP-ATLSG--GQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFS 179 (213)
T ss_pred CcccccHHHHhhHHHHHHHhccchhhhcCh-hhcCc--chHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHH
Confidence 1111111233333444332222 22333 566566655554 23344432 2
Q ss_pred HHhhcCcEEEEEcccccc
Q 024152 241 SLSLSQTILIFINQVFSI 258 (271)
Q Consensus 241 lake~~~~Vi~~sql~~~ 258 (271)
.+++.++|++.++|-..+
T Consensus 180 ~~r~agiPtv~VTHD~~D 197 (213)
T COG4136 180 EVRAAGIPTVQVTHDLQD 197 (213)
T ss_pred HHHhcCCCeEEEeccccc
Confidence 367889999999997644
No 372
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=98.89 E-value=6e-10 Score=117.51 Aligned_cols=146 Identities=14% Similarity=0.089 Sum_probs=92.8
Q ss_pred HHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHH----hhcCCeEEEEcCCCCC-CHHHHHHcCCcCCcceecCCCC
Q 024152 107 LDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEA----QRQGGYCVFIDAEHAL-DPSLAETIGVKTENLLLAQPDC 181 (271)
Q Consensus 107 LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~----~~~~g~v~~~~~e~~~-~~~~~~~~g~~~~~~~~~~~~~ 181 (271)
|+.+.+ -+++|++++|.||||+|||||++.+++.. .+.+|.|.|.+.+... ....++.+++.+|+....+..+
T Consensus 77 L~~vs~--~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lT 154 (1394)
T TIGR00956 77 LKPMDG--LIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLT 154 (1394)
T ss_pred eeCCEE--EEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCC
Confidence 444443 78899999999999999999999999976 3467776554322111 1122345788888877777789
Q ss_pred HHHHHHHHHHHHhcC----Cc-----cEEEEcchhhhcC-------------CCccCCccchhhHHHHHHHHH-------
Q 024152 182 GEQALSLVDTLIRSG----SV-----DVVVVDSVAALVP-------------KGELDGEMGDAHMAMQARLMS------- 232 (271)
Q Consensus 182 ~~e~~~~~~~l~~~~----~~-----~lvvID~l~~~~~-------------~~~l~~~~g~~~~~~~~~~l~------- 232 (271)
+.|.+.+..++.... +. ...++|.+..... ...+++ |++||+..++++.
T Consensus 155 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSG--GerkRvsIA~aL~~~p~vll 232 (1394)
T TIGR00956 155 VGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSG--GERKRVSIAEASLGGAKIQC 232 (1394)
T ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCc--ccchHHHHHHHHHhCCCEEE
Confidence 999887754432100 00 0001121111110 122444 8999999998873
Q ss_pred --------------HHHHHHHHHHhhcCcEEEEEcccc
Q 024152 233 --------------QALRKLSHSLSLSQTILIFINQVF 256 (271)
Q Consensus 233 --------------~~~r~L~~lake~~~~Vi~~sql~ 256 (271)
.+.+.|+.++++.|.+||+++|..
T Consensus 233 lDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~ 270 (1394)
T TIGR00956 233 WDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQC 270 (1394)
T ss_pred EeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCC
Confidence 355567777777899999998863
No 373
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.89 E-value=6.3e-09 Score=100.96 Aligned_cols=71 Identities=23% Similarity=0.261 Sum_probs=54.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCC---CCCHHHHHHcCCcCCcceecCCCCHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH---ALDPSLAETIGVKTENLLLAQPDCGEQALS 187 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~---~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~ 187 (271)
-+++|+.++|.|+||+|||||++.+++...+.+|.+.+ +... .....+++.+++.+|+..+++ .+..+++.
T Consensus 337 ~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~-~g~~~~~~~~~~~~~~i~~v~q~~~lf~-~ti~~Ni~ 410 (569)
T PRK10789 337 TLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRF-HDIPLTKLQLDSWRSRLAVVSQTPFLFS-DTVANNIA 410 (569)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEE-CCEEHhhCCHHHHHhheEEEccCCeecc-ccHHHHHh
Confidence 67899999999999999999999999999999998654 4322 122356778899999877664 35555443
No 374
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=98.89 E-value=8.6e-09 Score=100.38 Aligned_cols=63 Identities=29% Similarity=0.331 Sum_probs=50.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCC---CCCHHHHHHcCCcCCcceecC
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH---ALDPSLAETIGVKTENLLLAQ 178 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~---~~~~~~~~~~g~~~~~~~~~~ 178 (271)
-+++|+.++|.|++|+|||||++.+++...+..|.+. ++... .....+++.+++.+|+..+++
T Consensus 357 ~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~-i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~ 422 (588)
T PRK13657 357 EAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRIL-IDGTDIRTVTRASLRRNIAVVFQDAGLFN 422 (588)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEE-ECCEEhhhCCHHHHHhheEEEecCccccc
Confidence 5779999999999999999999999999999999854 44432 223467788999999876653
No 375
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.89 E-value=3e-09 Score=104.49 Aligned_cols=131 Identities=18% Similarity=0.238 Sum_probs=75.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcc-eecCCCCHHHHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENL-LLAQPDCGEQALSLVDTLI 193 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~-~~~~~~~~~e~~~~~~~l~ 193 (271)
-+.+|++++|+|+||+|||||++.|++...+..|.|.+ +.. -.++|.+|.. .+.+..++.+++.......
T Consensus 341 ~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~--------~~i~y~~q~~~~l~~~~tv~e~l~~~~~~~ 411 (635)
T PRK11147 341 QVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTK--------LEVAYFDQHRAELDPEKTVMDNLAEGKQEV 411 (635)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCC--------cEEEEEeCcccccCCCCCHHHHHHhhcccc
Confidence 57899999999999999999999999998888887644 321 0355555543 2334445555543321000
Q ss_pred --hc------CCccEEEEc-chhhhcCCCccCCccchhhHHHHHHHHH-----------------HHHHHHHHHHhhcCc
Q 024152 194 --RS------GSVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMS-----------------QALRKLSHSLSLSQT 247 (271)
Q Consensus 194 --~~------~~~~lvvID-~l~~~~~~~~l~~~~g~~~~~~~~~~l~-----------------~~~r~L~~lake~~~ 247 (271)
.. .-+..+-+. .... .+-..++ .|++++...++++. .....|..+.++++.
T Consensus 412 ~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~LS--gGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~ 488 (635)
T PRK11147 412 MVNGRPRHVLGYLQDFLFHPKRAM-TPVKALS--GGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSYQG 488 (635)
T ss_pred cccchHHHHHHHHHhcCCCHHHHh-ChhhhCC--HHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCC
Confidence 00 000000010 0000 0012233 37777777777663 223355556677788
Q ss_pred EEEEEccccc
Q 024152 248 ILIFINQVFS 257 (271)
Q Consensus 248 ~Vi~~sql~~ 257 (271)
+||++||-..
T Consensus 489 tvi~vSHd~~ 498 (635)
T PRK11147 489 TVLLVSHDRQ 498 (635)
T ss_pred eEEEEECCHH
Confidence 9999999763
No 376
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=98.89 E-value=3e-09 Score=114.32 Aligned_cols=137 Identities=11% Similarity=0.084 Sum_probs=89.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC--HHHHHHcCCcCCcceecCCCCHHHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGVKTENLLLAQPDCGEQALSLVDTL 192 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~--~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l 192 (271)
.+.+|++++|.|+||+|||||++.+++...+++|.|.+ .+..... ...++.+|+.+|...+++..++.|.+.+..++
T Consensus 952 ~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i-~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~l 1030 (2272)
T TIGR01257 952 TFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLV-GGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQL 1030 (2272)
T ss_pred EEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEE-CCEECcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHh
Confidence 67899999999999999999999999999999998654 4332221 23456689999988888888998887764332
Q ss_pred HhcC----------CccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHH
Q 024152 193 IRSG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHS 241 (271)
Q Consensus 193 ~~~~----------~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~l 241 (271)
.... -++.+-++...... ...++ .|++|+...++++. .....|.++
T Consensus 1031 kg~~~~~~~~~v~~lL~~vgL~~~~~~~-~~~LS--GGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l 1107 (2272)
T TIGR01257 1031 KGRSWEEAQLEMEAMLEDTGLHHKRNEE-AQDLS--GGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKY 1107 (2272)
T ss_pred cCCCHHHHHHHHHHHHHHcCCchhhcCC-hhhCC--HHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHH
Confidence 1100 01111111111111 12333 38888888888873 222233333
Q ss_pred HhhcCcEEEEEccccc
Q 024152 242 LSLSQTILIFINQVFS 257 (271)
Q Consensus 242 ake~~~~Vi~~sql~~ 257 (271)
+ .+.+||+++|...
T Consensus 1108 -~-~g~TIIltTHdmd 1121 (2272)
T TIGR01257 1108 -R-SGRTIIMSTHHMD 1121 (2272)
T ss_pred -h-CCCEEEEEECCHH
Confidence 3 3889999999764
No 377
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=98.89 E-value=4.6e-09 Score=101.49 Aligned_cols=135 Identities=13% Similarity=0.075 Sum_probs=80.9
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCC--CCCHHHHHHcCCcCCcceecCCC--------CHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH--ALDPSLAETIGVKTENLLLAQPD--------CGEQ 184 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~--~~~~~~~~~~g~~~~~~~~~~~~--------~~~e 184 (271)
-+++|+.++|.|+||+|||||++.+++...++.|.|.+.+.+- .....+++.+++.+|+..+++.. +.++
T Consensus 345 ~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~ 424 (547)
T PRK10522 345 TIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPEGKPANPAL 424 (547)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccccCchHHHH
Confidence 5779999999999999999999999999999999865533221 11235677788888876554321 1112
Q ss_pred HHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHH---------------------HHHHHHHHHh
Q 024152 185 ALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQ---------------------ALRKLSHSLS 243 (271)
Q Consensus 185 ~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~---------------------~~r~L~~lak 243 (271)
+.+.+.. .+.+.. ++..........++ .|++||...+|++.. +.+.|....+
T Consensus 425 ~~~~~~~----~~l~~~-~~~~~~~~~G~~LS--gGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~ 497 (547)
T PRK10522 425 VEKWLER----LKMAHK-LELEDGRISNLKLS--KGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQ 497 (547)
T ss_pred HHHHHHH----cCCchh-hhccccCCCCCCCC--HHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH
Confidence 2222222 122110 00000000012333 388888888888731 2233433334
Q ss_pred hcCcEEEEEcccc
Q 024152 244 LSQTILIFINQVF 256 (271)
Q Consensus 244 e~~~~Vi~~sql~ 256 (271)
+.+.|+|+++|-.
T Consensus 498 ~~~~tvi~itH~~ 510 (547)
T PRK10522 498 EMGKTIFAISHDD 510 (547)
T ss_pred hCCCEEEEEEech
Confidence 4689999999964
No 378
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=98.89 E-value=8.1e-09 Score=109.40 Aligned_cols=80 Identities=16% Similarity=0.189 Sum_probs=61.5
Q ss_pred HHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC--CC-HHHHHHcCCcCCcceecCCCCH
Q 024152 106 ALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA--LD-PSLAETIGVKTENLLLAQPDCG 182 (271)
Q Consensus 106 ~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~--~~-~~~~~~~g~~~~~~~~~~~~~~ 182 (271)
-|+.+.- -+++|++++|+|+||||||||++.+++...+..|.|.+.+.... .. ..+++.+++.+|+..++. .++
T Consensus 400 vL~~isl--~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~-~TI 476 (1466)
T PTZ00265 400 IYKDLNF--TLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFS-NSI 476 (1466)
T ss_pred eeccceE--EEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchh-ccH
Confidence 3454443 68899999999999999999999999999999998655343221 12 346778999999987775 477
Q ss_pred HHHHHH
Q 024152 183 EQALSL 188 (271)
Q Consensus 183 ~e~~~~ 188 (271)
.+++.+
T Consensus 477 ~eNI~~ 482 (1466)
T PTZ00265 477 KNNIKY 482 (1466)
T ss_pred HHHHHh
Confidence 777765
No 379
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.88 E-value=9.7e-09 Score=100.11 Aligned_cols=70 Identities=17% Similarity=0.202 Sum_probs=54.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCC---CCCHHHHHHcCCcCCcceecCCCCHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH---ALDPSLAETIGVKTENLLLAQPDCGEQAL 186 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~---~~~~~~~~~~g~~~~~~~~~~~~~~~e~~ 186 (271)
-+++|+.++|.|++|+|||||++.+++...|++|.|. +++.+ .....+.+.+++.+|+..+++. |..+++
T Consensus 363 ~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~-idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI 435 (592)
T PRK10790 363 SVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIR-LDGRPLSSLSHSVLRQGVAMVQQDPVVLAD-TFLANV 435 (592)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEE-ECCEEhhhCCHHHHHhheEEEccCCccccc-hHHHHH
Confidence 6789999999999999999999999999999999855 44432 2234678889999998776653 444433
No 380
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.88 E-value=9.9e-09 Score=90.22 Aligned_cols=38 Identities=24% Similarity=0.206 Sum_probs=34.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEE
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVF 152 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~ 152 (271)
-+++|++++|.|+||+|||||++.+++...+..|.|.+
T Consensus 46 ~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 46 KAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 56699999999999999999999999999988887654
No 381
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=1.3e-08 Score=95.33 Aligned_cols=138 Identities=23% Similarity=0.271 Sum_probs=88.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC---CHHHHHHcCCcCCcceecCC------------
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLLLAQP------------ 179 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~---~~~~~~~~g~~~~~~~~~~~------------ 179 (271)
-+|+|+-++|+|+|||||||+++.+.+... .+|+ +++++.+.. ...+++.+|++||+-.+++.
T Consensus 374 ~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~-I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~s 451 (591)
T KOG0057|consen 374 TIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGS-ILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPS 451 (591)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCc-EEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCC
Confidence 789999999999999999999999999998 7787 556654332 23677889999997554432
Q ss_pred CCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHH---------------------HHHHHHH
Q 024152 180 DCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLM---------------------SQALRKL 238 (271)
Q Consensus 180 ~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l---------------------~~~~r~L 238 (271)
.+.+++.+.|++.-- ++.-.=.=|.-+...+.....-+.|++|+...+|++ .++++.+
T Consensus 452 as~eeV~e~~k~a~~-hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i 530 (591)
T KOG0057|consen 452 ASDEEVVEACKRAGL-HDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMI 530 (591)
T ss_pred cCHHHHHHHHHHcCc-HHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHH
Confidence 345666666665310 000000001111112222222334888888888887 2344455
Q ss_pred HHHHhhcCcEEEEEccccc
Q 024152 239 SHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 239 ~~lake~~~~Vi~~sql~~ 257 (271)
.. +.-+.|+|++.|-.+
T Consensus 531 ~~--~~~~rTvI~IvH~l~ 547 (591)
T KOG0057|consen 531 MD--VMSGRTVIMIVHRLD 547 (591)
T ss_pred HH--hcCCCeEEEEEecch
Confidence 33 357999999999763
No 382
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.87 E-value=7.2e-09 Score=100.24 Aligned_cols=65 Identities=14% Similarity=0.141 Sum_probs=51.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSL 188 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~ 188 (271)
-+++|++++|.|+||+|||||++.|++...+..|.|.+.. ...+++.+|...+++..++.+++..
T Consensus 27 ~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~---------~~~i~~v~Q~~~~~~~~tv~e~i~~ 91 (552)
T TIGR03719 27 SFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP---------GIKVGYLPQEPQLDPTKTVRENVEE 91 (552)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC---------CCEEEEEeccCCCCCCCcHHHHHHH
Confidence 5779999999999999999999999999988888865422 1247788887766666677776653
No 383
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.87 E-value=3.6e-09 Score=102.29 Aligned_cols=131 Identities=19% Similarity=0.196 Sum_probs=79.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcce-ecCCCCHHHHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLL-LAQPDCGEQALSLVDTLI 193 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~-~~~~~~~~e~~~~~~~l~ 193 (271)
-+++|++++|.|+||+|||||++.+++...+..|.|.+ +.. ..+++.+|+.. ++...++.+++.......
T Consensus 344 ~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~-~~~--------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~ 414 (552)
T TIGR03719 344 KLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKI-GET--------VKLAYVDQSRDALDPNKTVWEEISGGLDII 414 (552)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEE-CCc--------eEEEEEeCCccccCCCCcHHHHHHhhcccc
Confidence 67899999999999999999999999998888888654 321 14677777642 444456666654422100
Q ss_pred h--------cCCccEEEEcc-hhhhcCCCccCCccchhhHHHHHHHHHH-----------------HHHHHHHHHhhcCc
Q 024152 194 R--------SGSVDVVVVDS-VAALVPKGELDGEMGDAHMAMQARLMSQ-----------------ALRKLSHSLSLSQT 247 (271)
Q Consensus 194 ~--------~~~~~lvvID~-l~~~~~~~~l~~~~g~~~~~~~~~~l~~-----------------~~r~L~~lake~~~ 247 (271)
. ..-+..+-++. .... +-..++ .|++++...++++.. ....+..+.++++.
T Consensus 415 ~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~LS--gGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 491 (552)
T TIGR03719 415 QLGKREVPSRAYVGRFNFKGSDQQK-KVGQLS--GGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFAG 491 (552)
T ss_pred ccCcchHHHHHHHHhCCCChhHhcC-chhhCC--HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCCC
Confidence 0 00001111110 0000 012333 388888888887732 23344455566656
Q ss_pred EEEEEccccc
Q 024152 248 ILIFINQVFS 257 (271)
Q Consensus 248 ~Vi~~sql~~ 257 (271)
+||++||...
T Consensus 492 ~viivsHd~~ 501 (552)
T TIGR03719 492 CAVVISHDRW 501 (552)
T ss_pred eEEEEeCCHH
Confidence 8999999764
No 384
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=98.86 E-value=9.6e-09 Score=101.95 Aligned_cols=63 Identities=25% Similarity=0.274 Sum_probs=50.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC---CCHHHHHHcCCcCCcceecC
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA---LDPSLAETIGVKTENLLLAQ 178 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~---~~~~~~~~~g~~~~~~~~~~ 178 (271)
-+++|+.++|+|++|+|||||++.+++...+.+|.+. +++... ....+++.+++.+|+..+++
T Consensus 487 ~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~-idg~~l~~~~~~~lr~~i~~v~Q~~~lf~ 552 (694)
T TIGR03375 487 TIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVL-LDGVDIRQIDPADLRRNIGYVPQDPRLFY 552 (694)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE-ECCEEhhhCCHHHHHhccEEECCChhhhh
Confidence 5789999999999999999999999999999999855 443322 22367788999998866553
No 385
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.86 E-value=2.2e-09 Score=95.25 Aligned_cols=38 Identities=29% Similarity=0.480 Sum_probs=34.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEE
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVF 152 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~ 152 (271)
-+++|++++|+|+||+|||||++.|++...+..|.|.+
T Consensus 59 ~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i 96 (282)
T cd03291 59 KIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKH 96 (282)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 57799999999999999999999999999888887544
No 386
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.86 E-value=4.5e-09 Score=101.70 Aligned_cols=131 Identities=21% Similarity=0.220 Sum_probs=79.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcc-eecCCCCHHHHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENL-LLAQPDCGEQALSLVDTLI 193 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~-~~~~~~~~~e~~~~~~~l~ 193 (271)
-+.+|++++|.|+||+|||||++.|++...+..|.|.+ +.. ..+++.+|+. .++...++.+++.......
T Consensus 346 ~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~-~~~--------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~ 416 (556)
T PRK11819 346 SLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKI-GET--------VKLAYVDQSRDALDPNKTVWEEISGGLDII 416 (556)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-CCc--------eEEEEEeCchhhcCCCCCHHHHHHhhcccc
Confidence 57799999999999999999999999999888888654 321 1467777765 4455567766655422110
Q ss_pred hcC--------CccEEEEc-chhhhcCCCccCCccchhhHHHHHHHHHH-----------------HHHHHHHHHhhcCc
Q 024152 194 RSG--------SVDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMSQ-----------------ALRKLSHSLSLSQT 247 (271)
Q Consensus 194 ~~~--------~~~lvvID-~l~~~~~~~~l~~~~g~~~~~~~~~~l~~-----------------~~r~L~~lake~~~ 247 (271)
... -+..+-+. ..... .-..++ .|++++...++++.. ....+..+.+++..
T Consensus 417 ~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~LS--gG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 493 (556)
T PRK11819 417 KVGNREIPSRAYVGRFNFKGGDQQK-KVGVLS--GGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFPG 493 (556)
T ss_pred cccccHHHHHHHHHhCCCChhHhcC-chhhCC--HHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCC
Confidence 000 00011110 00000 012233 378888888887732 22344444556556
Q ss_pred EEEEEccccc
Q 024152 248 ILIFINQVFS 257 (271)
Q Consensus 248 ~Vi~~sql~~ 257 (271)
+||+++|...
T Consensus 494 tvi~vtHd~~ 503 (556)
T PRK11819 494 CAVVISHDRW 503 (556)
T ss_pred eEEEEECCHH
Confidence 8999999763
No 387
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=98.86 E-value=1.1e-08 Score=101.74 Aligned_cols=70 Identities=24% Similarity=0.322 Sum_probs=54.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC---CCHHHHHHcCCcCCcceecCCCCHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA---LDPSLAETIGVKTENLLLAQPDCGEQAL 186 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~---~~~~~~~~~g~~~~~~~~~~~~~~~e~~ 186 (271)
-+++|+.++|+|++|+|||||++.+++...+++|.|. +++... ....+.+.+++.+|+..+++ .+..|++
T Consensus 503 ~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~-idg~~i~~~~~~~lr~~i~~v~Q~~~lF~-gTIreNI 575 (711)
T TIGR00958 503 TLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVL-LDGVPLVQYDHHYLHRQVALVGQEPVLFS-GSVRENI 575 (711)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEE-ECCEEHHhcCHHHHHhhceEEecCccccc-cCHHHHH
Confidence 6889999999999999999999999999999999854 554322 23467778999999876654 3444433
No 388
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.86 E-value=1.6e-08 Score=97.62 Aligned_cols=76 Identities=22% Similarity=0.258 Sum_probs=55.7
Q ss_pred HHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC---CCHHHHHHcCCcCCcceecCCCCHH
Q 024152 107 LDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA---LDPSLAETIGVKTENLLLAQPDCGE 183 (271)
Q Consensus 107 LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~---~~~~~~~~~g~~~~~~~~~~~~~~~ 183 (271)
|+.+.- -+++|+.++|+|+||+|||||++.+++...+.+|.|.+ ++... ....+.+.+++.+|+..+++. +..
T Consensus 334 l~~~~~--~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~-~g~~i~~~~~~~~~~~i~~v~q~~~lf~~-ti~ 409 (544)
T TIGR01842 334 LRGISF--RLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRL-DGADLKQWDRETFGKHIGYLPQDVELFPG-TVA 409 (544)
T ss_pred cccceE--EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE-CCEehhhCCHHHHhhheEEecCCcccccc-cHH
Confidence 444433 67899999999999999999999999999999998654 43221 123566788999988766543 444
Q ss_pred HHH
Q 024152 184 QAL 186 (271)
Q Consensus 184 e~~ 186 (271)
+++
T Consensus 410 ~Ni 412 (544)
T TIGR01842 410 ENI 412 (544)
T ss_pred HHH
Confidence 443
No 389
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=98.85 E-value=1.8e-08 Score=97.88 Aligned_cols=64 Identities=19% Similarity=0.283 Sum_probs=50.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCC--CCCCHHHHHHcCCcCCcceecC
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE--HALDPSLAETIGVKTENLLLAQ 178 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e--~~~~~~~~~~~g~~~~~~~~~~ 178 (271)
-+++|+.++|.|++|+|||||++.+++...+.+|.+.+.+.+ ......+.+.+++.+|+..+++
T Consensus 362 ~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~ 427 (576)
T TIGR02204 362 TVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFA 427 (576)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCcccc
Confidence 578999999999999999999999999999999985543322 1122356778999998876553
No 390
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=98.85 E-value=1.7e-08 Score=100.48 Aligned_cols=63 Identities=19% Similarity=0.182 Sum_probs=50.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCC---CCCHHHHHHcCCcCCcceecC
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH---ALDPSLAETIGVKTENLLLAQ 178 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~---~~~~~~~~~~g~~~~~~~~~~ 178 (271)
-+++|+.++|.|++|+|||||++.+++...+++|.+. +++.. .....+++.+++.+|+..+++
T Consensus 496 ~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~-idg~~i~~~~~~~lr~~i~~v~Q~~~lf~ 561 (708)
T TIGR01193 496 TIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEIL-LNGFSLKDIDRHTLRQFINYLPQEPYIFS 561 (708)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEE-ECCEEHHHcCHHHHHHheEEEecCceehh
Confidence 6889999999999999999999999999999999855 44432 222367788999999866553
No 391
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.85 E-value=1.1e-08 Score=89.01 Aligned_cols=72 Identities=13% Similarity=0.153 Sum_probs=50.9
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHh--h---cCCeEEEEcCCCCC----C-HHHHHHcCCcCCcceecCCCCHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQ--R---QGGYCVFIDAEHAL----D-PSLAETIGVKTENLLLAQPDCGEQ 184 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~--~---~~g~v~~~~~e~~~----~-~~~~~~~g~~~~~~~~~~~~~~~e 184 (271)
-+++|++++|.|+||+|||||++.|++... + ..|.|.+ +.+... . ..+.+.+++.+|+...+. .++.+
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~-~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~ 104 (252)
T PRK14255 27 DFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSL-RGQNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYE 104 (252)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEE-cCEEcccccccHHHhcCeEEEEECCCccCC-CcHHH
Confidence 567999999999999999999999999754 3 3677554 433221 1 133456888888876665 57766
Q ss_pred HHHH
Q 024152 185 ALSL 188 (271)
Q Consensus 185 ~~~~ 188 (271)
++..
T Consensus 105 nl~~ 108 (252)
T PRK14255 105 NVIY 108 (252)
T ss_pred HHHH
Confidence 6654
No 392
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=98.84 E-value=3.6e-09 Score=104.24 Aligned_cols=129 Identities=16% Similarity=0.119 Sum_probs=77.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHH-----
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLV----- 189 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~----- 189 (271)
-+++|++++|.||||+|||||++.+++...+.+|.+.+ +. .+.+++.+|+..+++. +..+++...
T Consensus 474 ~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~-~~--------~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~ 543 (659)
T TIGR00954 474 EVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTK-PA--------KGKLFYVPQRPYMTLG-TLRDQIIYPDSSED 543 (659)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEee-cC--------CCcEEEECCCCCCCCc-CHHHHHhcCCChhh
Confidence 57799999999999999999999999998888887543 21 2345666666544433 444443321
Q ss_pred -----------HHHHhcCCccEE-----EEcchhhhcCCCccCCccchhhHHHHHHHHHH-----------------HHH
Q 024152 190 -----------DTLIRSGSVDVV-----VVDSVAALVPKGELDGEMGDAHMAMQARLMSQ-----------------ALR 236 (271)
Q Consensus 190 -----------~~l~~~~~~~lv-----vID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~-----------------~~r 236 (271)
.......++.-. -.|.... . ...+++ |++||...++++.. .-.
T Consensus 544 ~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~-~-~~~LSg--GqkQRl~iARal~~~p~illLDEpts~LD~~~~~ 619 (659)
T TIGR00954 544 MKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQD-W-MDVLSG--GEKQRIAMARLFYHKPQFAILDECTSAVSVDVEG 619 (659)
T ss_pred hhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccc-c-ccCCCH--HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHH
Confidence 001111111000 0011000 0 123333 88888888888732 333
Q ss_pred HHHHHHhhcCcEEEEEccccc
Q 024152 237 KLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 237 ~L~~lake~~~~Vi~~sql~~ 257 (271)
.+.+.+++.++|+|+++|-..
T Consensus 620 ~l~~~l~~~~~tvI~isH~~~ 640 (659)
T TIGR00954 620 YMYRLCREFGITLFSVSHRKS 640 (659)
T ss_pred HHHHHHHHcCCEEEEEeCchH
Confidence 455556677999999999764
No 393
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.83 E-value=1.3e-08 Score=97.11 Aligned_cols=58 Identities=16% Similarity=0.292 Sum_probs=43.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC--CH--HHHHHcCCcCCc
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--DP--SLAETIGVKTEN 173 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~--~~--~~~~~~g~~~~~ 173 (271)
-+++|++++|+|+||+|||||++.+++...+.+|.|.+ +.+... .. .+.+.+++.+|.
T Consensus 270 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~-~g~~i~~~~~~~~~~~~i~~~~q~ 331 (491)
T PRK10982 270 DLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITL-HGKKINNHNANEAINHGFALVTEE 331 (491)
T ss_pred EEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEE-CCEECCCCCHHHHHHCCCEEcCCc
Confidence 57799999999999999999999999999888898654 432221 11 223346777665
No 394
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=98.83 E-value=3.2e-08 Score=84.46 Aligned_cols=58 Identities=24% Similarity=0.323 Sum_probs=46.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC---CCHHHHHHcCCcCC
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA---LDPSLAETIGVKTE 172 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~---~~~~~~~~~g~~~~ 172 (271)
-+++|+-..|.|+||+|||||+..+++...+..+.+.+++.... ...++++.+|++..
T Consensus 53 ~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~ 113 (257)
T COG1119 53 QVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSS 113 (257)
T ss_pred eecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccCH
Confidence 46699999999999999999999999999988888777764322 22577888887753
No 395
>PLN03140 ABC transporter G family member; Provisional
Probab=98.83 E-value=3.9e-09 Score=111.57 Aligned_cols=146 Identities=15% Similarity=0.129 Sum_probs=91.6
Q ss_pred HHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh--cCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHH
Q 024152 106 ALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR--QGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGE 183 (271)
Q Consensus 106 ~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~--~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~ 183 (271)
-|+.+.+ -+++|++++|.||||+|||||++.|++.... ..|.+. +++.........+.+++.+|+..+.+..++.
T Consensus 895 iL~~vs~--~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~-inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~ 971 (1470)
T PLN03140 895 LLREVTG--AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIR-ISGFPKKQETFARISGYCEQNDIHSPQVTVR 971 (1470)
T ss_pred EeeCcEE--EEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEE-ECCccCChHHhhhheEEEccccccCCCCcHH
Confidence 4555554 7889999999999999999999999997542 356644 4443332234456689999987777778898
Q ss_pred HHHHHHHHHHhcCC-------------ccEEEEcchhhhcC----CCccCCccchhhHHHHHHHHH--------------
Q 024152 184 QALSLVDTLIRSGS-------------VDVVVVDSVAALVP----KGELDGEMGDAHMAMQARLMS-------------- 232 (271)
Q Consensus 184 e~~~~~~~l~~~~~-------------~~lvvID~l~~~~~----~~~l~~~~g~~~~~~~~~~l~-------------- 232 (271)
|.+.+...+..... ++.+-++....... ...++ .|+++|...++++.
T Consensus 972 E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LS--gGerkRvsIa~aL~~~P~lL~LDEPTsg 1049 (1470)
T PLN03140 972 ESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLS--TEQRKRLTIAVELVANPSIIFMDEPTSG 1049 (1470)
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcC--HHHHHHHHHHHHHhhCCCEEEEeCCCCC
Confidence 88776433210000 01111111111110 01233 38889988888873
Q ss_pred -------HHHHHHHHHHhhcCcEEEEEccccc
Q 024152 233 -------QALRKLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 233 -------~~~r~L~~lake~~~~Vi~~sql~~ 257 (271)
.+.+.|+++++ .|.+||+++|.-.
T Consensus 1050 LD~~~a~~v~~~L~~l~~-~g~tVI~t~Hq~~ 1080 (1470)
T PLN03140 1050 LDARAAAIVMRTVRNTVD-TGRTVVCTIHQPS 1080 (1470)
T ss_pred CCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCC
Confidence 34445555554 4899999999754
No 396
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=98.83 E-value=2.1e-08 Score=97.66 Aligned_cols=70 Identities=23% Similarity=0.231 Sum_probs=53.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC---CCHHHHHHcCCcCCcceecCCCCHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA---LDPSLAETIGVKTENLLLAQPDCGEQAL 186 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~---~~~~~~~~~g~~~~~~~~~~~~~~~e~~ 186 (271)
-+++|+.++|.|+||+|||||++.+++...+.+|.+.+ ++... ....+++.+++.+|+..+++ .+..+++
T Consensus 357 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~-~g~~~~~~~~~~~~~~i~~v~q~~~lf~-~ti~~Ni 429 (585)
T TIGR01192 357 EAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILI-DGIDINTVTRESLRKSIATVFQDAGLFN-RSIRENI 429 (585)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEE-CCEEhhhCCHHHHHhheEEEccCCccCc-ccHHHHH
Confidence 57799999999999999999999999999999998554 43321 22356778899998876654 3455444
No 397
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.82 E-value=3.2e-08 Score=76.94 Aligned_cols=115 Identities=19% Similarity=0.293 Sum_probs=75.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHHhhc-----CCeEEEEcCCCCCC-----HHHHHHcCCcCCcceecCCCCHHHHH
Q 024152 117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQ-----GGYCVFIDAEHALD-----PSLAETIGVKTENLLLAQPDCGEQAL 186 (271)
Q Consensus 117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~~~-----~g~v~~~~~e~~~~-----~~~~~~~g~~~~~~~~~~~~~~~e~~ 186 (271)
+.+.++.|.|+||+|||+++..++...... ..+++++....... ..+...++..... ..+..++.
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~l~ 76 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS-----RQTSDELR 76 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS-----TS-HHHHH
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc-----cCCHHHHH
Confidence 457789999999999999999999988753 45677776433222 2445555554433 45677777
Q ss_pred HHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcccc
Q 024152 187 SLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVF 256 (271)
Q Consensus 187 ~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~ 256 (271)
..+.+...+....+++||.++.+.. . ..+..|+.++.+.+++||++.+..
T Consensus 77 ~~~~~~l~~~~~~~lviDe~~~l~~-----------------~---~~l~~l~~l~~~~~~~vvl~G~~~ 126 (131)
T PF13401_consen 77 SLLIDALDRRRVVLLVIDEADHLFS-----------------D---EFLEFLRSLLNESNIKVVLVGTPE 126 (131)
T ss_dssp HHHHHHHHHCTEEEEEEETTHHHHT-----------------H---HHHHHHHHHTCSCBEEEEEEESST
T ss_pred HHHHHHHHhcCCeEEEEeChHhcCC-----------------H---HHHHHHHHHHhCCCCeEEEEEChh
Confidence 7777777666678999999988620 1 334444555779999999998753
No 398
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=98.82 E-value=2.2e-08 Score=97.16 Aligned_cols=64 Identities=19% Similarity=0.252 Sum_probs=50.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCC--CCCCHHHHHHcCCcCCcceecC
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE--HALDPSLAETIGVKTENLLLAQ 178 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e--~~~~~~~~~~~g~~~~~~~~~~ 178 (271)
-+++|+.++|.|++|+|||||++.+++...+.+|.|.+.+.+ ......+.+.+++.+|+..+++
T Consensus 354 ~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~ 419 (571)
T TIGR02203 354 VIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFN 419 (571)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCccccc
Confidence 577999999999999999999999999999999985543322 1222366778999998876653
No 399
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.82 E-value=9.2e-08 Score=76.88 Aligned_cols=139 Identities=13% Similarity=0.146 Sum_probs=85.9
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC--------HHHHHHcCCcCCcceecCCCCHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--------PSLAETIGVKTENLLLAQPDCGEQAL 186 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~--------~~~~~~~g~~~~~~~~~~~~~~~e~~ 186 (271)
.-+.|+.+.+.||+|+|||+|++.+...--+.+|...+-+.+..+. ..+++..|+.+|.+.+++.+++-+++
T Consensus 24 ~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enl 103 (242)
T COG4161 24 DCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENL 103 (242)
T ss_pred cCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHH
Confidence 4679999999999999999999998887778888644322222111 25678899999999999998876554
Q ss_pred HHH-HHHH-------h---cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH-----------------HHHH--
Q 024152 187 SLV-DTLI-------R---SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS-----------------QALR-- 236 (271)
Q Consensus 187 ~~~-~~l~-------~---~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~-----------------~~~r-- 236 (271)
-.+ .+.. . ..-++.+-+......+ ++..+.|++||+..+|++. ++..
T Consensus 104 ieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~---plhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqv 180 (242)
T COG4161 104 IEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRY---PLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQI 180 (242)
T ss_pred HhhhHHHhCCCHHHHHHHHHHHHHHhccccccccC---ceecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHH
Confidence 221 1100 0 0001111122222222 2333348889999988872 1111
Q ss_pred -HHHHHHhhcCcEEEEEcccc
Q 024152 237 -KLSHSLSLSQTILIFINQVF 256 (271)
Q Consensus 237 -~L~~lake~~~~Vi~~sql~ 256 (271)
.+.+...+.|+|-++++|--
T Consensus 181 v~iikel~~tgitqvivthev 201 (242)
T COG4161 181 VSIIKELAETGITQVIVTHEV 201 (242)
T ss_pred HHHHHHHHhcCceEEEEEeeh
Confidence 22233456899988888753
No 400
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.82 E-value=2.3e-08 Score=99.29 Aligned_cols=63 Identities=25% Similarity=0.326 Sum_probs=50.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC---CCHHHHHHcCCcCCcceecC
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA---LDPSLAETIGVKTENLLLAQ 178 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~---~~~~~~~~~g~~~~~~~~~~ 178 (271)
-+++|+.++|+|++|+|||||++.+++...+.+|.|. +++... ....+++.+++.+|+..+++
T Consensus 479 ~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~-idg~~i~~~~~~~~r~~i~~v~q~~~lf~ 544 (694)
T TIGR01846 479 DIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVL-VDGVDLAIADPAWLRRQMGVVLQENVLFS 544 (694)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE-ECCEehhhCCHHHHHHhCeEEccCCeehh
Confidence 6789999999999999999999999999999999855 544322 22366778999998866553
No 401
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=1.1e-08 Score=98.66 Aligned_cols=72 Identities=24% Similarity=0.264 Sum_probs=56.8
Q ss_pred cHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC---CCHHHHHHcCCcCCcceecC
Q 024152 104 SFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA---LDPSLAETIGVKTENLLLAQ 178 (271)
Q Consensus 104 ~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~---~~~~~~~~~g~~~~~~~~~~ 178 (271)
.+-|+.+.- -++||++++|+||+|+||||++..+.....|.+|.|. +|+... ....+.+.+|++.|.+.++.
T Consensus 481 ~~Vlk~lsf--ti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~Il-lDG~~i~~~~~~~lr~~Ig~V~QEPvLFs 555 (716)
T KOG0058|consen 481 VPVLKNLSF--TIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRIL-LDGVPISDINHKYLRRKIGLVGQEPVLFS 555 (716)
T ss_pred chhhcCcee--eeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEE-ECCeehhhcCHHHHHHHeeeeeccceeec
Confidence 345666655 7999999999999999999999999999999999855 554432 23467788999988776653
No 402
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=98.81 E-value=9e-10 Score=86.69 Aligned_cols=70 Identities=24% Similarity=0.321 Sum_probs=55.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC---HHHHHHcCCcCCcceecCCCCHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQA 185 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~---~~~~~~~g~~~~~~~~~~~~~~~e~ 185 (271)
-+++|++++|+|+||+|||||++.+++...+..|.| +++...... ......+++.+++..+....++.+.
T Consensus 7 ~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~ 79 (137)
T PF00005_consen 7 EIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSI-LINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN 79 (137)
T ss_dssp EEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEE-EETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH
T ss_pred EEcCCCEEEEEccCCCccccceeeeccccccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence 467999999999999999999999999999888874 455443333 3567778888888777777776654
No 403
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=98.80 E-value=1.2e-08 Score=86.87 Aligned_cols=40 Identities=20% Similarity=0.151 Sum_probs=35.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEc
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID 154 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~ 154 (271)
-+++|++++|.||||+|||||++.+++...+.+|.|..+.
T Consensus 9 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~ 48 (213)
T PRK15177 9 VMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLR 48 (213)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEec
Confidence 5779999999999999999999999999999989865343
No 404
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=98.80 E-value=4.7e-09 Score=110.89 Aligned_cols=145 Identities=17% Similarity=0.182 Sum_probs=90.3
Q ss_pred HHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHh---hcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCH
Q 024152 106 ALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQ---RQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCG 182 (271)
Q Consensus 106 ~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~---~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~ 182 (271)
-|+.+.. -+++|++++|.||||+|||||++.+++... +.+|.+. +++... ...+++.+++.+|+.......++
T Consensus 778 iL~~vs~--~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~-i~G~~~-~~~~~~~i~yv~Q~~~~~~~~Tv 853 (1394)
T TIGR00956 778 ILNNVDG--WVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRL-VNGRPL-DSSFQRSIGYVQQQDLHLPTSTV 853 (1394)
T ss_pred eeeCCEE--EEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEE-ECCEEC-ChhhhcceeeecccccCCCCCCH
Confidence 3555544 788999999999999999999999999876 4567754 544332 23456678999988666667788
Q ss_pred HHHHHHHHHHHhcCC-------------ccEEEEcchhhhcCC---CccCCccchhhHHHHHHHHHHHH-----------
Q 024152 183 EQALSLVDTLIRSGS-------------VDVVVVDSVAALVPK---GELDGEMGDAHMAMQARLMSQAL----------- 235 (271)
Q Consensus 183 ~e~~~~~~~l~~~~~-------------~~lvvID~l~~~~~~---~~l~~~~g~~~~~~~~~~l~~~~----------- 235 (271)
.|.+.+...+..... ++.+-++........ ..++ .|++||...++++...+
T Consensus 854 ~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LS--gGqrqRl~Ia~aL~~~P~~iLlLDEPTs 931 (1394)
T TIGR00956 854 RESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLN--VEQRKRLTIGVELVAKPKLLLFLDEPTS 931 (1394)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCC--HHHhhHHHHHHHHHcCCCeEEEEcCCCC
Confidence 888776443211000 011111111100000 0233 37888888888774333
Q ss_pred -----------HHHHHHHhhcCcEEEEEccccc
Q 024152 236 -----------RKLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 236 -----------r~L~~lake~~~~Vi~~sql~~ 257 (271)
+.|+++++ .|.+||+++|.-.
T Consensus 932 gLD~~~~~~i~~~L~~la~-~g~tvI~t~H~~~ 963 (1394)
T TIGR00956 932 GLDSQTAWSICKLMRKLAD-HGQAILCTIHQPS 963 (1394)
T ss_pred CCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCC
Confidence 34555543 5899999999643
No 405
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.78 E-value=1.3e-07 Score=72.99 Aligned_cols=125 Identities=29% Similarity=0.323 Sum_probs=70.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHhcCC
Q 024152 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGS 197 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~~~~ 197 (271)
++..+.|.||||+||||++..++..+......+++++.+........... ............................
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL--LIIVGGKKASGSGELRLRLALALARKLK 78 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHHhcC
Confidence 36789999999999999999999988876656788887655443222111 0000000111222222223333333344
Q ss_pred ccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccc
Q 024152 198 VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQV 255 (271)
Q Consensus 198 ~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql 255 (271)
+.++++|++..+... ........ ..............+..+|++++.
T Consensus 79 ~~viiiDei~~~~~~---------~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 79 PDVLILDEITSLLDA---------EQEALLLL--LEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred CCEEEEECCcccCCH---------HHHHHHHh--hhhhHHHHHHHhcCCCEEEEEeCC
Confidence 799999999877631 10000000 000222333455678889988884
No 406
>PRK13409 putative ATPase RIL; Provisional
Probab=98.77 E-value=1.3e-08 Score=98.93 Aligned_cols=36 Identities=31% Similarity=0.327 Sum_probs=33.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEE
Q 024152 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCV 151 (271)
Q Consensus 116 l~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~ 151 (271)
+++|++++|+|+||+|||||++.+++...++.|.+.
T Consensus 96 i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~ 131 (590)
T PRK13409 96 PKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYE 131 (590)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccCCCcccc
Confidence 459999999999999999999999999999988864
No 407
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=98.76 E-value=1.2e-08 Score=100.44 Aligned_cols=138 Identities=16% Similarity=0.161 Sum_probs=84.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC---HHH----HHHcCCcCCcceecCCCCHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSL----AETIGVKTENLLLAQPDCGEQALS 187 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~---~~~----~~~~g~~~~~~~~~~~~~~~e~~~ 187 (271)
-+++|++++|.|+||+|||||++.+++...++.|.+.| +.+.... ..+ .+.+++.+|...+++..+..+++.
T Consensus 30 ~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~-~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~ 108 (648)
T PRK10535 30 DIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRV-AGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVE 108 (648)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEE-CCEEcCcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHH
Confidence 46699999999999999999999999999999998554 4433221 122 346889999887777677666554
Q ss_pred HHHHHHh----------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHH---------------------HHH
Q 024152 188 LVDTLIR----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQ---------------------ALR 236 (271)
Q Consensus 188 ~~~~l~~----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~---------------------~~r 236 (271)
....... ..-++.+-++...... ...+ +.|+.|+...++++.. ...
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~-~~~L--S~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ 185 (648)
T PRK10535 109 VPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQ-PSQL--SGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMA 185 (648)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCC-cccC--CHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHH
Confidence 3211100 0001111111111111 1222 3377888888887732 222
Q ss_pred HHHHHHhhcCcEEEEEccccc
Q 024152 237 KLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 237 ~L~~lake~~~~Vi~~sql~~ 257 (271)
.+++ +++.+.++++++|...
T Consensus 186 ll~~-l~~~g~tilivsH~~~ 205 (648)
T PRK10535 186 ILHQ-LRDRGHTVIIVTHDPQ 205 (648)
T ss_pred HHHH-HHhcCCEEEEECCCHH
Confidence 3333 2345899999999875
No 408
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.76 E-value=8.3e-08 Score=80.49 Aligned_cols=83 Identities=20% Similarity=0.229 Sum_probs=59.6
Q ss_pred HHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC---HHHHHHcCCcCCcc--eecCC
Q 024152 105 FALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENL--LLAQP 179 (271)
Q Consensus 105 ~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~---~~~~~~~g~~~~~~--~~~~~ 179 (271)
..|+.+.- -++.|+++.|.|.||+|||||++.+++.+.+++|. ++++...... ..++..+.-++|++ ..+..
T Consensus 20 ~~l~~~sL--~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~-I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~ 96 (263)
T COG1101 20 RALNGLSL--EIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQ-ILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPE 96 (263)
T ss_pred HHHhcCce--eecCCceEEEEcCCCccHHHHHHHhhCccccCCce-EEECceecccCCHHHHhhHHHHHhcchhhCCccc
Confidence 34454444 68999999999999999999999999999999998 4555543322 13344455567765 34556
Q ss_pred CCHHHHHHHHH
Q 024152 180 DCGEQALSLVD 190 (271)
Q Consensus 180 ~~~~e~~~~~~ 190 (271)
++.+|++.++.
T Consensus 97 lTieENl~la~ 107 (263)
T COG1101 97 LTIEENLALAE 107 (263)
T ss_pred ccHHHHHHHHH
Confidence 78888876653
No 409
>PLN03232 ABC transporter C family member; Provisional
Probab=98.76 E-value=4.1e-08 Score=104.67 Aligned_cols=69 Identities=14% Similarity=0.120 Sum_probs=54.7
Q ss_pred HHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC---CCHHHHHHcCCcCCcceecC
Q 024152 107 LDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA---LDPSLAETIGVKTENLLLAQ 178 (271)
Q Consensus 107 LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~---~~~~~~~~~g~~~~~~~~~~ 178 (271)
|+.+.- -+++|+.++|+||+|+|||||++.+.+...+++|.| ++++... ....+++.+++.+|+..+++
T Consensus 1252 L~~isl--~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I-~IdG~di~~i~~~~lR~~i~iVpQdp~LF~ 1323 (1495)
T PLN03232 1252 LHGLSF--FVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRI-MIDDCDVAKFGLTDLRRVLSIIPQSPVLFS 1323 (1495)
T ss_pred cccceE--EEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceE-EECCEEhhhCCHHHHHhhcEEECCCCeeeC
Confidence 444443 688999999999999999999999999999999985 5554332 22467888999999877764
No 410
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=3e-08 Score=92.77 Aligned_cols=63 Identities=33% Similarity=0.363 Sum_probs=51.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC--CHHHHHHcCCcCCcceec
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--DPSLAETIGVKTENLLLA 177 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~--~~~~~~~~g~~~~~~~~~ 177 (271)
-+.+||-++|.|++||||||++..+++...++.|.+.+-+.+... ++.+...+++..|+..++
T Consensus 360 ~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF 424 (573)
T COG4987 360 TLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLF 424 (573)
T ss_pred eecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHH
Confidence 577999999999999999999999999999999997776655332 334777888888876554
No 411
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=98.76 E-value=4.4e-08 Score=88.66 Aligned_cols=63 Identities=21% Similarity=0.251 Sum_probs=44.9
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC--HHHHHHcCCcCCcceec
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGVKTENLLLA 177 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~--~~~~~~~g~~~~~~~~~ 177 (271)
.+.+||++-|.|.||||||||++.+.+..+|++|.+.+.+..-+.+ .++++-+.-.+.++.++
T Consensus 345 ~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF 409 (546)
T COG4615 345 TIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLF 409 (546)
T ss_pred EEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhh
Confidence 5789999999999999999999999999999999855544322222 24444444444444333
No 412
>PLN03130 ABC transporter C family member; Provisional
Probab=98.75 E-value=4.5e-08 Score=104.72 Aligned_cols=69 Identities=17% Similarity=0.200 Sum_probs=54.7
Q ss_pred HHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC---CHHHHHHcCCcCCcceecC
Q 024152 107 LDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLLLAQ 178 (271)
Q Consensus 107 LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~---~~~~~~~~g~~~~~~~~~~ 178 (271)
|+.+.- -+++|+.++|+||+|+|||||++.+.+...+.+|. +++++.... ...+++.+++.+|+..++.
T Consensus 1255 L~~is~--~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~-I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~ 1326 (1622)
T PLN03130 1255 LHGLSF--EISPSEKVGIVGRTGAGKSSMLNALFRIVELERGR-ILIDGCDISKFGLMDLRKVLGIIPQAPVLFS 1326 (1622)
T ss_pred ecceeE--EEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCce-EEECCEecccCCHHHHHhccEEECCCCcccc
Confidence 444443 68899999999999999999999999999999998 455554322 2467888999999876653
No 413
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.75 E-value=1.4e-08 Score=99.81 Aligned_cols=38 Identities=24% Similarity=0.316 Sum_probs=34.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEE
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVF 152 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~ 152 (271)
-+.+|++++|+||||+|||||++.|++...+.+|.|.+
T Consensus 334 ~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~ 371 (638)
T PRK10636 334 NLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGL 371 (638)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEE
Confidence 67899999999999999999999999999888887544
No 414
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.74 E-value=3.1e-08 Score=93.99 Aligned_cols=38 Identities=29% Similarity=0.437 Sum_probs=34.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEE
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVF 152 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~ 152 (271)
.+++|++++|.|+||+|||||++.|++...+..|.|.+
T Consensus 46 sI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I 83 (549)
T PRK13545 46 EVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDI 83 (549)
T ss_pred EEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 67799999999999999999999999999888887654
No 415
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.73 E-value=3.4e-08 Score=90.78 Aligned_cols=35 Identities=31% Similarity=0.529 Sum_probs=33.2
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCC
Q 024152 114 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGG 148 (271)
Q Consensus 114 GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g 148 (271)
|.+..||++++.||||.|||||++.+|+.+.|+.|
T Consensus 362 G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg 396 (591)
T COG1245 362 GEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEG 396 (591)
T ss_pred CeeecceEEEEECCCCcchHHHHHHHhccccCCCC
Confidence 78999999999999999999999999999998866
No 416
>PTZ00243 ABC transporter; Provisional
Probab=98.73 E-value=5.3e-08 Score=103.97 Aligned_cols=63 Identities=21% Similarity=0.237 Sum_probs=51.9
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC---CCHHHHHHcCCcCCcceecC
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA---LDPSLAETIGVKTENLLLAQ 178 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~---~~~~~~~~~g~~~~~~~~~~ 178 (271)
-+++|+.++|+||+|+|||||++.+.+...+.+|.| ++++... ..+.+++.+++.+|+..+++
T Consensus 1332 ~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I-~IDG~di~~i~l~~LR~~I~iVpQdp~LF~ 1397 (1560)
T PTZ00243 1332 RIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEI-RVNGREIGAYGLRELRRQFSMIPQDPVLFD 1397 (1560)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEEcccCCHHHHHhcceEECCCCcccc
Confidence 577999999999999999999999999999999985 4554332 22467888999999877664
No 417
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=98.71 E-value=7.4e-08 Score=79.05 Aligned_cols=124 Identities=23% Similarity=0.287 Sum_probs=66.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHhcCCccE
Q 024152 121 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDV 200 (271)
Q Consensus 121 li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~l 200 (271)
++.|.|++|+|||+|+.+++.. .+++++|+.+.......+.+++.-- +..+-....+.+........+....+.+.
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~---~~~~~~y~at~~~~d~em~~rI~~H-~~~R~~~w~t~E~~~~l~~~l~~~~~~~~ 76 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAE---LGGPVTYIATAEAFDDEMAERIARH-RKRRPAHWRTIETPRDLVSALKELDPGDV 76 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHh---cCCCeEEEEccCcCCHHHHHHHHHH-HHhCCCCceEeecHHHHHHHHHhcCCCCE
Confidence 5789999999999999999865 4568899998877765544432211 11111111122222222222221125678
Q ss_pred EEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcc
Q 024152 201 VVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQ 254 (271)
Q Consensus 201 vvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sq 254 (271)
|+||.++.....-...+ .+.. ...+......|....++.++++|+++-
T Consensus 77 VLIDclt~~~~n~l~~~-~~~~-----~~~~~~~i~~l~~~l~~~~~~~viVsn 124 (169)
T cd00544 77 VLIDCLTLWVTNLLFAD-LEEW-----EAAIADEIDALLAAVRNKPGTLILVSN 124 (169)
T ss_pred EEEEcHhHHHHHhCCCc-cccc-----hhHHHHHHHHHHHHHHcCCCcEEEEEC
Confidence 99999987753211111 0100 001223334344444567777766653
No 418
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.71 E-value=1.4e-07 Score=80.47 Aligned_cols=47 Identities=26% Similarity=0.223 Sum_probs=39.5
Q ss_pred cHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEE
Q 024152 104 SFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVF 152 (271)
Q Consensus 104 ~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~ 152 (271)
+..|+.+.- -+.+|+.++|+|+||+|||||++.|++...|++|.|..
T Consensus 40 ~~aL~disf--~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v 86 (249)
T COG1134 40 FWALKDISF--EIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKV 86 (249)
T ss_pred EEEecCceE--EEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEE
Confidence 344555544 67799999999999999999999999999999998554
No 419
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=98.70 E-value=8.3e-08 Score=89.00 Aligned_cols=126 Identities=19% Similarity=0.217 Sum_probs=78.1
Q ss_pred cCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC---HHHHHHcCCcCCcceecC
Q 024152 102 TGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQ 178 (271)
Q Consensus 102 Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~---~~~~~~~g~~~~~~~~~~ 178 (271)
+|-+-|..+-- -++||+.++++||+|+||||+++.+......++|. +-+++.+... ..+++.+|++||+-.+++
T Consensus 549 p~k~vl~disF--~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGs-I~iDgqdIrnvt~~SLRs~IGVVPQDtvLFN 625 (790)
T KOG0056|consen 549 PGKPVLSDISF--TVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGS-ITIDGQDIRNVTQSSLRSSIGVVPQDTVLFN 625 (790)
T ss_pred CCCceeecceE--EecCCcEEEEECCCCCchhHHHHHHHHHhhccCce-EEEcCchHHHHHHHHHHHhcCcccCcceeec
Confidence 44455555443 68899999999999999999999999999999986 5566654432 367889999998754442
Q ss_pred C------------CCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHH
Q 024152 179 P------------DCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLM 231 (271)
Q Consensus 179 ~------------~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l 231 (271)
+ .+.||+.+.++...- ++--+-+-|.-....+...+.-+.|++||+..+|.+
T Consensus 626 dTI~yNIryak~~AsneevyaAAkAA~I-HdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARti 689 (790)
T KOG0056|consen 626 DTILYNIRYAKPSASNEEVYAAAKAAQI-HDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTI 689 (790)
T ss_pred ceeeeheeecCCCCChHHHHHHHHHhhH-HHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHH
Confidence 2 234555554443210 111111112222222333344445777777777766
No 420
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=98.70 E-value=8.8e-08 Score=102.30 Aligned_cols=69 Identities=22% Similarity=0.225 Sum_probs=54.5
Q ss_pred HHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC---CCHHHHHHcCCcCCcceecC
Q 024152 107 LDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA---LDPSLAETIGVKTENLLLAQ 178 (271)
Q Consensus 107 LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~---~~~~~~~~~g~~~~~~~~~~ 178 (271)
|+.+.- -+++|+.++|+||+|+|||||++.+.+...+.+|. +++++... ....+++.+++.+|+..+++
T Consensus 1302 L~~is~--~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~-I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~ 1373 (1522)
T TIGR00957 1302 LRHINV--TIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGE-IIIDGLNIAKIGLHDLRFKITIIPQDPVLFS 1373 (1522)
T ss_pred ccceeE--EEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCe-EEECCEEccccCHHHHHhcCeEECCCCcccC
Confidence 444443 68899999999999999999999999999999998 55554332 22467888999999876664
No 421
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=98.68 E-value=1.1e-07 Score=100.85 Aligned_cols=38 Identities=16% Similarity=0.063 Sum_probs=32.9
Q ss_pred HHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh
Q 024152 106 ALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR 145 (271)
Q Consensus 106 ~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~ 145 (271)
-|+.+.- -+++|+.++|+|++||||||++..+++...+
T Consensus 1183 vL~~lsl--~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp 1220 (1466)
T PTZ00265 1183 IYKDLTF--SCDSKKTTAIVGETGSGKSTVMSLLMRFYDL 1220 (1466)
T ss_pred cccCeeE--EEcCCCEEEEECCCCCCHHHHHHHHHHhCCC
Confidence 3554443 6889999999999999999999999999987
No 422
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.68 E-value=1.4e-08 Score=99.80 Aligned_cols=38 Identities=29% Similarity=0.461 Sum_probs=34.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEE
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVF 152 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~ 152 (271)
.+++|++++|+|+||||||||++.|++...++.|.|.+
T Consensus 23 ~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~ 60 (638)
T PRK10636 23 TINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTF 60 (638)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEe
Confidence 67799999999999999999999999998888887654
No 423
>PLN03073 ABC transporter F family; Provisional
Probab=98.66 E-value=3.7e-08 Score=97.72 Aligned_cols=37 Identities=24% Similarity=0.412 Sum_probs=34.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEE
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCV 151 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~ 151 (271)
.+++|++++|.|+||+|||||++.|++...+.+|.|.
T Consensus 531 ~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~ 567 (718)
T PLN03073 531 GIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVF 567 (718)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEE
Confidence 6789999999999999999999999999998888754
No 424
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=98.66 E-value=1.6e-07 Score=100.15 Aligned_cols=62 Identities=21% Similarity=0.282 Sum_probs=50.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC---CHHHHHHcCCcCCcceecC
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLLLAQ 178 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~---~~~~~~~~g~~~~~~~~~~ 178 (271)
-+++|+.++|+|++|+|||||++.+++... .+|. +++++.... ...+++.+++.+|+..+++
T Consensus 1241 ~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~-I~IdG~di~~i~~~~lR~~is~IpQdp~LF~ 1305 (1490)
T TIGR01271 1241 SVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGE-IQIDGVSWNSVTLQTWRKAFGVIPQKVFIFS 1305 (1490)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcE-EEECCEEcccCCHHHHHhceEEEeCCCccCc
Confidence 688999999999999999999999999986 6777 456554322 2467888999999887764
No 425
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.63 E-value=1.6e-07 Score=89.76 Aligned_cols=38 Identities=24% Similarity=0.331 Sum_probs=34.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEE
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVF 152 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~ 152 (271)
.+.+|+-|+|+|+||+|||||++.|++...+..|.|..
T Consensus 25 ~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~ 62 (530)
T COG0488 25 TLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTR 62 (530)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEee
Confidence 67799999999999999999999999999888776443
No 426
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.62 E-value=1.3e-07 Score=96.23 Aligned_cols=62 Identities=31% Similarity=0.426 Sum_probs=52.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC---CHHHHHHcCCcCCcceec
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLLLA 177 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~---~~~~~~~~g~~~~~~~~~ 177 (271)
-+|+|+.++|+|++||||||+...+.+...|..|. ++++++... .+.++..+|++.|.+.++
T Consensus 375 ~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~-V~idG~di~~~~~~~lr~~iglV~QePvlF 439 (1228)
T KOG0055|consen 375 KIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGE-VLIDGEDIRNLNLKWLRSQIGLVSQEPVLF 439 (1228)
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCce-EEEcCccchhcchHHHHhhcCeeeechhhh
Confidence 58999999999999999999999999999999998 567765443 346788999999987554
No 427
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.60 E-value=5.6e-07 Score=75.81 Aligned_cols=29 Identities=24% Similarity=0.267 Sum_probs=25.9
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHHh
Q 024152 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQ 144 (271)
Q Consensus 116 l~~G~li~I~G~~G~GKTtl~~~ia~~~~ 144 (271)
+..|++++|.||||+|||||++.|++...
T Consensus 22 l~~g~~~~ltGpNg~GKSTllr~i~~~~~ 50 (199)
T cd03283 22 MEKKNGILITGSNMSGKSTFLRTIGVNVI 50 (199)
T ss_pred EcCCcEEEEECCCCCChHHHHHHHHHHHH
Confidence 45689999999999999999999998764
No 428
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.58 E-value=1.3e-07 Score=85.96 Aligned_cols=139 Identities=19% Similarity=0.258 Sum_probs=86.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCeEEEEcCCCCCC---HH----HHHHcCCcCCcceec--CCC
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR-----QGGYCVFIDAEHALD---PS----LAETIGVKTENLLLA--QPD 180 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~-----~~g~v~~~~~e~~~~---~~----~~~~~g~~~~~~~~~--~~~ 180 (271)
-+.+||.++|+|.+|+|||..++.+++.+.. .+|.+. |+++.... +. +-.++++.||..-.. +..
T Consensus 32 ~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~-f~G~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~ 110 (534)
T COG4172 32 DIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSIL-FDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLH 110 (534)
T ss_pred eecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeE-EcChhhhcCCHHHHhhhcccceEEEecccccccCcHh
Confidence 5669999999999999999999999998875 245544 44443321 22 233567777765332 222
Q ss_pred CHH-HHHHHHHHHH-------hc---CCccEEEEcchhhhcC--CCccCCccchhhHHHHHHHH----------------
Q 024152 181 CGE-QALSLVDTLI-------RS---GSVDVVVVDSVAALVP--KGELDGEMGDAHMAMQARLM---------------- 231 (271)
Q Consensus 181 ~~~-e~~~~~~~l~-------~~---~~~~lvvID~l~~~~~--~~~l~~~~g~~~~~~~~~~l---------------- 231 (271)
+.. ++.+.++... +. .-++.|-|........ .+++++ |++||++.+.++
T Consensus 111 tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSG--GqRQRVMIAMALan~P~lLIADEPTTAL 188 (534)
T COG4172 111 TIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSG--GQRQRVMIAMALANEPDLLIADEPTTAL 188 (534)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCc--chhhHHHHHHHHcCCCCeEeecCCcchh
Confidence 333 2222111100 00 0123333333222111 245555 899999999887
Q ss_pred -----HHHHHHHHHHHhhcCcEEEEEcccc
Q 024152 232 -----SQALRKLSHSLSLSQTILIFINQVF 256 (271)
Q Consensus 232 -----~~~~r~L~~lake~~~~Vi~~sql~ 256 (271)
++++..|+.+-+++|.++++++|-.
T Consensus 189 DVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL 218 (534)
T COG4172 189 DVTVQAQILDLLKELQAELGMAILFITHDL 218 (534)
T ss_pred hhhhHHHHHHHHHHHHHHhCcEEEEEeccH
Confidence 5788888888999999999999965
No 429
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.54 E-value=3.4e-07 Score=90.03 Aligned_cols=38 Identities=21% Similarity=0.314 Sum_probs=34.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEE
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVF 152 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~ 152 (271)
-+++|++++|+|+||+|||||++.|++...+++|.|.+
T Consensus 25 ~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~ 62 (635)
T PRK11147 25 HIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIY 62 (635)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEe
Confidence 57799999999999999999999999998888888654
No 430
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=98.53 E-value=4.7e-07 Score=74.35 Aligned_cols=120 Identities=18% Similarity=0.243 Sum_probs=66.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCC----cCCcceec-CCCCHHHHHHHHHHHHh
Q 024152 120 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGV----KTENLLLA-QPDCGEQALSLVDTLIR 194 (271)
Q Consensus 120 ~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~----~~~~~~~~-~~~~~~e~~~~~~~l~~ 194 (271)
.++.|.|+||+|||||+..++... +.+++|+.+......++.+++.. -++..... .+.+..+ .+...
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~---~~~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~---~i~~~-- 73 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQS---GLQVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAE---LLRAD-- 73 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHc---CCCcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHHH---HHHhh--
Confidence 579999999999999999997653 34578888766665544333211 12222111 1112222 22221
Q ss_pred cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcccc
Q 024152 195 SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVF 256 (271)
Q Consensus 195 ~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~ 256 (271)
..+.++|+||++..+.. ..+.. .. ...+...+..+....++.++++|+++.-.
T Consensus 74 ~~~~~~VlID~Lt~~~~-n~l~~--~~------~~~~~~~l~~li~~L~~~~~tvVlVs~Ev 126 (170)
T PRK05800 74 AAPGRCVLVDCLTTWVT-NLLFE--EG------EEAIAAEIDALLAALQQLPAKIILVTNEV 126 (170)
T ss_pred cCCCCEEEehhHHHHHH-HHhcc--cc------hHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 23466899999988752 11100 00 01122334445555567888888887544
No 431
>PF13479 AAA_24: AAA domain
Probab=98.52 E-value=2.2e-06 Score=72.89 Aligned_cols=125 Identities=24% Similarity=0.211 Sum_probs=74.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHh-cCC
Q 024152 119 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR-SGS 197 (271)
Q Consensus 119 G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~-~~~ 197 (271)
+-.++|.|+||+|||||+..+ ++++|++.|.......... +....+..+.+++...+..+.. ...
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~--------~k~l~id~E~g~~~~~~~~------~~~~i~i~s~~~~~~~~~~l~~~~~~ 68 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL--------PKPLFIDTENGSDSLKFLD------DGDVIPITSWEDFLEALDELEEDEAD 68 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC--------CCeEEEEeCCCccchhhhc------CCCeeCcCCHHHHHHHHHHHHhccCC
Confidence 446899999999999999887 4579999987754311100 1122233377777776655432 457
Q ss_pred ccEEEEcchhhhcC---CCcc-------C--Cccc-hhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcccccccc
Q 024152 198 VDVVVVDSVAALVP---KGEL-------D--GEMG-DAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFSINL 260 (271)
Q Consensus 198 ~~lvvID~l~~~~~---~~~l-------~--~~~g-~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~~~~ 260 (271)
.+.||||++..+.. ..-. . +.++ ..--+.....+.+.++. +....+..||+++|......
T Consensus 69 y~tiVIDsis~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~i~~---l~~~~~~~VI~tah~~~~~~ 141 (213)
T PF13479_consen 69 YDTIVIDSISWLEDMCLEYICRQNKKKIKRSGDPDYGKGYGELQQEFMRFIDK---LLNALGKNVIFTAHAKEEED 141 (213)
T ss_pred CCEEEEECHHHHHHHHHHHHhhhhcccccccCCCcccchHHHHHHHHHHHHHH---HHHHCCCcEEEEEEEEEEEc
Confidence 99999999875421 0001 0 0001 11122333334444443 35578999999999886544
No 432
>PLN03073 ABC transporter F family; Provisional
Probab=98.49 E-value=1.7e-07 Score=93.05 Aligned_cols=42 Identities=24% Similarity=0.294 Sum_probs=35.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHH---hhcCCeEEEEcCC
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEA---QRQGGYCVFIDAE 156 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~---~~~~g~v~~~~~e 156 (271)
-+.+|+.++|+|+||+|||||++.|++.. .+.++.+.|++.+
T Consensus 199 ~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~ 243 (718)
T PLN03073 199 TLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQE 243 (718)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEecc
Confidence 57899999999999999999999999743 3567788887543
No 433
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=98.47 E-value=7.9e-07 Score=90.44 Aligned_cols=75 Identities=19% Similarity=0.251 Sum_probs=59.2
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC--CH-HHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152 114 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--DP-SLAETIGVKTENLLLAQPDCGEQALSL 188 (271)
Q Consensus 114 GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~--~~-~~~~~~g~~~~~~~~~~~~~~~e~~~~ 188 (271)
..+++|++.++.|+||+||||+.+++.+...+.+|.+.+-+..... .. ...+.+|+.||.-.+.+.+|..|.+.+
T Consensus 586 ~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~ 663 (885)
T KOG0059|consen 586 FAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEF 663 (885)
T ss_pred EEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHHHHHHH
Confidence 3899999999999999999999999999999999985542322222 11 367789999999888888887766543
No 434
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=98.46 E-value=4.7e-07 Score=76.13 Aligned_cols=30 Identities=27% Similarity=0.433 Sum_probs=26.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR 145 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~ 145 (271)
-+++| +++|.||||+|||||+..+++...+
T Consensus 19 ~~~~g-~~~i~G~nGsGKStll~al~~l~~~ 48 (197)
T cd03278 19 PFPPG-LTAIVGPNGSGKSNIIDAIRWVLGE 48 (197)
T ss_pred ecCCC-cEEEECCCCCCHHHHHHHHHHHhcc
Confidence 46688 9999999999999999999887643
No 435
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.46 E-value=2.1e-06 Score=66.81 Aligned_cols=79 Identities=28% Similarity=0.428 Sum_probs=50.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHH-HHHcCCcCCcceecCCCCHHHHHHHHHHHHhcC
Q 024152 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSL-AETIGVKTENLLLAQPDCGEQALSLVDTLIRSG 196 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~-~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~~~ 196 (271)
.+..+.|.|+||+|||++++.++......+..+++++......... ....... ............
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~ 83 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHF--------------LVRLLFELAEKA 83 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhh--------------hHhHHHHhhccC
Confidence 5778999999999999999999998876667778877543332211 1000000 111111222234
Q ss_pred CccEEEEcchhhhc
Q 024152 197 SVDVVVVDSVAALV 210 (271)
Q Consensus 197 ~~~lvvID~l~~~~ 210 (271)
...++++|.+..+.
T Consensus 84 ~~~~lilDe~~~~~ 97 (151)
T cd00009 84 KPGVLFIDEIDSLS 97 (151)
T ss_pred CCeEEEEeChhhhh
Confidence 67899999988763
No 436
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.46 E-value=1.6e-06 Score=76.36 Aligned_cols=86 Identities=21% Similarity=0.122 Sum_probs=54.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC-C--CHHHHHHcCCcCCcceecCCCCHHHHHHH---HHHHH
Q 024152 120 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA-L--DPSLAETIGVKTENLLLAQPDCGEQALSL---VDTLI 193 (271)
Q Consensus 120 ~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~-~--~~~~~~~~g~~~~~~~~~~~~~~~e~~~~---~~~l~ 193 (271)
.-++|.|+||+|||||++.+++...+..|.+.+.+..-. . ..+++..+++.+|.. ++..+++.+...+ +..+.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~~~k~~~~~~~i 190 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDGCPKAEGMMMLI 190 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhccccccc-ccccccccccchHHHHHHHHH
Confidence 578999999999999999999999998888554332211 1 135555566666643 2222332221111 22233
Q ss_pred hcCCccEEEEcch
Q 024152 194 RSGSVDVVVVDSV 206 (271)
Q Consensus 194 ~~~~~~lvvID~l 206 (271)
....++++++|..
T Consensus 191 ~~~~P~villDE~ 203 (270)
T TIGR02858 191 RSMSPDVIVVDEI 203 (270)
T ss_pred HhCCCCEEEEeCC
Confidence 3468999999994
No 437
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=98.46 E-value=1.1e-06 Score=74.06 Aligned_cols=27 Identities=30% Similarity=0.436 Sum_probs=24.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHh
Q 024152 118 KGRVVEIYGPEASGKTTLALHVIAEAQ 144 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTtl~~~ia~~~~ 144 (271)
+|++++|.|+||+|||||++.++....
T Consensus 28 ~~~~~~l~G~Ng~GKStll~~i~~~~~ 54 (202)
T cd03243 28 SGRLLLITGPNMGGKSTYLRSIGLAVL 54 (202)
T ss_pred CCeEEEEECCCCCccHHHHHHHHHHHH
Confidence 679999999999999999999996543
No 438
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.45 E-value=1.4e-06 Score=90.57 Aligned_cols=62 Identities=21% Similarity=0.319 Sum_probs=51.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC---CHHHHHHcCCcCCcceec
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLLLA 177 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~---~~~~~~~~g~~~~~~~~~ 177 (271)
-++|||-++|+||.|+|||||++.+-+...+.+|. +.+|+-+.. -..+++++++.||++.++
T Consensus 1162 ~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~-I~IDgvdI~~igL~dLRsrlsIIPQdPvLF 1226 (1381)
T KOG0054|consen 1162 TIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGE-ILIDGVDISKIGLHDLRSRLSIIPQDPVLF 1226 (1381)
T ss_pred EEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCe-EEEcCeecccccHHHHHhcCeeeCCCCcee
Confidence 47799999999999999999999999999998887 556654332 247889999999987665
No 439
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=98.42 E-value=5.4e-07 Score=96.16 Aligned_cols=61 Identities=18% Similarity=0.317 Sum_probs=45.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALS 187 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~ 187 (271)
-+++|++++|.||+|+|||||++.|++...+..|.|. +++ .++|.+|+..+++ .++.|++.
T Consensus 448 ~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~-~~g----------~iayv~Q~~~l~~-~Ti~eNI~ 508 (1490)
T TIGR01271 448 KLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIK-HSG----------RISFSPQTSWIMP-GTIKDNII 508 (1490)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE-ECC----------EEEEEeCCCccCC-ccHHHHHH
Confidence 5779999999999999999999999999999888754 332 2556666554443 25544443
No 440
>PLN03130 ABC transporter C family member; Provisional
Probab=98.42 E-value=5.8e-07 Score=96.43 Aligned_cols=53 Identities=23% Similarity=0.347 Sum_probs=42.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcC-CeEEEEcCCCCCCHHHHHHcCCcCCcceecC
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQG-GYCVFIDAEHALDPSLAETIGVKTENLLLAQ 178 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~-g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~ 178 (271)
-+++|++++|+|++|+|||||+..+++...+.+ |.|.+ ...++|.+|+..+++
T Consensus 639 ~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l-----------~~~Iayv~Q~p~Lfn 692 (1622)
T PLN03130 639 DVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI-----------RGTVAYVPQVSWIFN 692 (1622)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE-----------cCeEEEEcCccccCC
Confidence 578999999999999999999999999999988 77542 234566666655443
No 441
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.42 E-value=2.7e-06 Score=81.51 Aligned_cols=121 Identities=19% Similarity=0.266 Sum_probs=71.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCe--------EEEEcCCCCC---C-H--H----------------HH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGY--------CVFIDAEHAL---D-P--S----------------LA 164 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~--------v~~~~~e~~~---~-~--~----------------~~ 164 (271)
.+++|+-++|+||||+|||||++.|++...+..|. +.||+-+... . . . ..
T Consensus 344 ~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L 423 (530)
T COG0488 344 RIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYL 423 (530)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHH
Confidence 78899999999999999999999999988876553 3455432210 0 0 0 11
Q ss_pred HHcCCcCCcce-ecCCCCH-HHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHH
Q 024152 165 ETIGVKTENLL-LAQPDCG-EQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSL 242 (271)
Q Consensus 165 ~~~g~~~~~~~-~~~~~~~-~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~la 242 (271)
.++++..+... ....++. +..+-.+..+. -.++.++++|..+...+. .....|....
T Consensus 424 ~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll-~~~pNvLiLDEPTNhLDi--------------------~s~~aLe~aL 482 (530)
T COG0488 424 GRFGFTGEDQEKPVGVLSGGEKARLLLAKLL-LQPPNLLLLDEPTNHLDI--------------------ESLEALEEAL 482 (530)
T ss_pred HHcCCChHHHhCchhhcCHhHHHHHHHHHHh-ccCCCEEEEcCCCccCCH--------------------HHHHHHHHHH
Confidence 12222222110 0111222 22222222222 247889999998877631 2233344446
Q ss_pred hhcCcEEEEEcccc
Q 024152 243 SLSQTILIFINQVF 256 (271)
Q Consensus 243 ke~~~~Vi~~sql~ 256 (271)
.++.-+||++||-+
T Consensus 483 ~~f~Gtvl~VSHDr 496 (530)
T COG0488 483 LDFEGTVLLVSHDR 496 (530)
T ss_pred HhCCCeEEEEeCCH
Confidence 78899999999976
No 442
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=98.40 E-value=5.8e-06 Score=70.54 Aligned_cols=125 Identities=15% Similarity=0.095 Sum_probs=69.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCC-cCCcceecCCCCHHHHHHHHHHHHh-cC
Q 024152 119 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGV-KTENLLLAQPDCGEQALSLVDTLIR-SG 196 (271)
Q Consensus 119 G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~-~~~~~~~~~~~~~~e~~~~~~~l~~-~~ 196 (271)
...+.|+|+||+||||+++.++ ++.++++.+...... .|. ..+-.....+...+++...+..+.. ..
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~-------~~~~~~~~d~~~~~l----~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~ 80 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLP-------GKTLVLSFDMSSKVL----IGDENVDIADHDDMPPIQAMVEFYVMQNIQAV 80 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcC-------CCCEEEeccccchhc----cCCCCCceeecCCCCCHHHHHHHHHHHHhccc
Confidence 4679999999999999998873 345667766543221 111 1111222233455566555543321 34
Q ss_pred CccEEEEcchhhhcC-------CCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcccccc
Q 024152 197 SVDVVVVDSVAALVP-------KGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFSI 258 (271)
Q Consensus 197 ~~~lvvID~l~~~~~-------~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~~ 258 (271)
+++.||||++..+.. +..-++.+.....+.....+...++. +++.++.||+++|....
T Consensus 81 ~ydtVVIDsI~~l~~~~~~~~~r~~k~~~~~~~~yg~~~~~fl~~l~~----L~~~g~nII~tAhe~~~ 145 (220)
T TIGR01618 81 KYDNIVIDNISALQNLWLENIGRAAKNGQPELQHYQKLDLWFLDLLTV----LKESNKNIYATAWELTN 145 (220)
T ss_pred cCCEEEEecHHHHHHHHHHHHhhhcCCCCcccccHHHHHHHHHHHHHH----HHhCCCcEEEEEeeccc
Confidence 689999999987643 11111111111112222333333333 35689999999999643
No 443
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.38 E-value=3.1e-06 Score=86.43 Aligned_cols=63 Identities=27% Similarity=0.363 Sum_probs=52.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC---HHHHHHcCCcCCcceecC
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQ 178 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~---~~~~~~~g~~~~~~~~~~ 178 (271)
-+++|+.++|+||+||||||..-.+-+...+..|. +.+|+.+... +.++++++++.|.+.++.
T Consensus 1012 ~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~-V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~ 1077 (1228)
T KOG0055|consen 1012 SIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGK-VKIDGVDIKDLNLKWLRKQIGLVSQEPVLFN 1077 (1228)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCe-EEECCcccccCCHHHHHHhcceeccCchhhc
Confidence 67899999999999999999999999999999997 5566544332 467889999999876664
No 444
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.37 E-value=1.1e-05 Score=72.75 Aligned_cols=90 Identities=18% Similarity=0.250 Sum_probs=55.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC------HHHHHHcCCcCCcceecCCCCHHHH-HHHH
Q 024152 117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGVKTENLLLAQPDCGEQA-LSLV 189 (271)
Q Consensus 117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~------~~~~~~~g~~~~~~~~~~~~~~~e~-~~~~ 189 (271)
.+|.+++|+||||+||||++..++..+.+.+++|.+++...-.. ..++...++..-. .....+.... ...+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~--~~~~~dpa~~v~~~l 189 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIA--QKEGADPASVAFDAI 189 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEE--eCCCCCHHHHHHHHH
Confidence 36899999999999999999999999998888988887643211 1234444432210 0111122111 1111
Q ss_pred HHHHhcCCccEEEEcchhhh
Q 024152 190 DTLIRSGSVDVVVVDSVAAL 209 (271)
Q Consensus 190 ~~l~~~~~~~lvvID~l~~~ 209 (271)
.. ....+.++|+||....+
T Consensus 190 ~~-~~~~~~D~ViIDTaGr~ 208 (318)
T PRK10416 190 QA-AKARGIDVLIIDTAGRL 208 (318)
T ss_pred HH-HHhCCCCEEEEeCCCCC
Confidence 11 12357899999986544
No 445
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.36 E-value=1.4e-06 Score=75.40 Aligned_cols=24 Identities=17% Similarity=0.173 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 024152 119 GRVVEIYGPEASGKTTLALHVIAE 142 (271)
Q Consensus 119 G~li~I~G~~G~GKTtl~~~ia~~ 142 (271)
|++++|.||||+|||||+..|+..
T Consensus 23 ~~~~~i~GpNGsGKStll~ai~~~ 46 (243)
T cd03272 23 PKHNVVVGRNGSGKSNFFAAIRFV 46 (243)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999999999854
No 446
>PLN03232 ABC transporter C family member; Provisional
Probab=98.35 E-value=5.3e-07 Score=96.27 Aligned_cols=37 Identities=30% Similarity=0.449 Sum_probs=33.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEE
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCV 151 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~ 151 (271)
-+++|++++|+|++|||||||++.+++...+.+|.+.
T Consensus 639 ~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~ 675 (1495)
T PLN03232 639 EIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV 675 (1495)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE
Confidence 5789999999999999999999999999998876543
No 447
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.35 E-value=1.9e-06 Score=80.74 Aligned_cols=53 Identities=25% Similarity=0.294 Sum_probs=45.4
Q ss_pred CccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEE
Q 024152 98 PVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI 153 (271)
Q Consensus 98 ~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~ 153 (271)
+.+.||+..+|.++ -+.+|+.++|.|++|+|||||+..+++...+..+.+.++
T Consensus 140 ~~l~tg~~vid~l~---~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~ 192 (438)
T PRK07721 140 EPMEVGVRAIDSLL---TVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALI 192 (438)
T ss_pred cccccchhhhheee---eecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEE
Confidence 46889999999995 588999999999999999999999999887776644443
No 448
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=98.35 E-value=3.7e-06 Score=80.82 Aligned_cols=35 Identities=23% Similarity=0.236 Sum_probs=30.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCe
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGY 149 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~ 149 (271)
.+++|+-+.|.|+||||||||.+.|++...-..|.
T Consensus 415 ~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~ 449 (604)
T COG4178 415 EVRPGERLLITGESGAGKTSLLRALAGLWPWGSGR 449 (604)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCc
Confidence 56799999999999999999999999987754444
No 449
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=98.32 E-value=6.9e-06 Score=66.77 Aligned_cols=120 Identities=15% Similarity=0.090 Sum_probs=64.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCC-CHHHHHHHHHHHHhcC
Q 024152 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPD-CGEQALSLVDTLIRSG 196 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~-~~~e~~~~~~~l~~~~ 196 (271)
.+.+++|.||||+|||+++..++..+....+.+...+........-+..+.+.+.. .... ...+...+++.+....
T Consensus 20 ~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~---~~lS~G~~~~~~la~~L~~~~ 96 (162)
T cd03227 20 EGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAELIFTR---LQLSGGEKELSALALILALAS 96 (162)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeEEEEehhe---eeccccHHHHHHHHHHHHhcC
Confidence 45799999999999999999988877765433222110000000000000000000 1111 1345555556554333
Q ss_pred --CccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccc
Q 024152 197 --SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 197 --~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~ 257 (271)
.++++++|++..-.+. .....+... +.+..++ ++++++++|...
T Consensus 97 ~~~~~llllDEp~~gld~-------------~~~~~l~~~---l~~~~~~-~~~vii~TH~~~ 142 (162)
T cd03227 97 LKPRPLYILDEIDRGLDP-------------RDGQALAEA---ILEHLVK-GAQVIVITHLPE 142 (162)
T ss_pred CCCCCEEEEeCCCCCCCH-------------HHHHHHHHH---HHHHHhc-CCEEEEEcCCHH
Confidence 7899999998755420 111223333 3333455 899999999764
No 450
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.31 E-value=6e-06 Score=72.39 Aligned_cols=26 Identities=27% Similarity=0.474 Sum_probs=24.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVI 140 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia 140 (271)
.+|.|.+++|.|.+|||||||+..+.
T Consensus 17 ~ip~g~~~~vtGvSGsGKStL~~~~l 42 (261)
T cd03271 17 DIPLGVLTCVTGVSGSGKSSLINDTL 42 (261)
T ss_pred eccCCcEEEEECCCCCchHHHHHHHH
Confidence 68899999999999999999999774
No 451
>PTZ00243 ABC transporter; Provisional
Probab=98.31 E-value=5e-07 Score=96.64 Aligned_cols=60 Identities=17% Similarity=0.336 Sum_probs=45.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQAL 186 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~ 186 (271)
-+++|++++|.|+||+|||||++.|++...+..|.|.+ . ..+++.+|+..+++ .++.+++
T Consensus 682 ~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~-~----------~~i~yv~Q~~~l~~-~Tv~enI 741 (1560)
T PTZ00243 682 SVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWA-E----------RSIAYVPQQAWIMN-ATVRGNI 741 (1560)
T ss_pred EECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEE-C----------CeEEEEeCCCccCC-CcHHHHH
Confidence 57799999999999999999999999999998887543 1 24666666655432 3555544
No 452
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=98.30 E-value=2.3e-06 Score=91.57 Aligned_cols=60 Identities=18% Similarity=0.397 Sum_probs=44.9
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQAL 186 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~ 186 (271)
-+++|++++|+|++|+|||||++.+++...+..|.+. ++. .+++.+|+..+++ .++.|++
T Consensus 660 ~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~-~~g----------~i~yv~Q~~~l~~-~Ti~eNI 719 (1522)
T TIGR00957 660 SIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVH-MKG----------SVAYVPQQAWIQN-DSLRENI 719 (1522)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEE-ECC----------EEEEEcCCccccC-CcHHHHh
Confidence 5789999999999999999999999999999888754 332 3556666554432 3444444
No 453
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=98.29 E-value=4.8e-06 Score=70.06 Aligned_cols=25 Identities=40% Similarity=0.490 Sum_probs=22.3
Q ss_pred CCCC-cEEEEEcCCCCcHHHHHHHHH
Q 024152 116 LPKG-RVVEIYGPEASGKTTLALHVI 140 (271)
Q Consensus 116 l~~G-~li~I~G~~G~GKTtl~~~ia 140 (271)
+.+| ++++|.||||+|||||++.++
T Consensus 24 i~~~~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 24 LGENKRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred ECCCceEEEEECCCCCChHHHHHHHH
Confidence 3477 489999999999999999988
No 454
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.28 E-value=7.3e-07 Score=83.08 Aligned_cols=47 Identities=21% Similarity=0.217 Sum_probs=41.7
Q ss_pred CCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 024152 97 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ 146 (271)
Q Consensus 97 ~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~ 146 (271)
-+.+.||+..||.++ -+.+|+.++|.|+||+|||||+.+|++...++
T Consensus 136 ~~~l~TGi~aID~ll---~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~d 182 (434)
T PRK07196 136 DTPLDVGVNAINGLL---TIGKGQRVGLMAGSGVGKSVLLGMITRYTQAD 182 (434)
T ss_pred ccccccceeeccceE---eEecceEEEEECCCCCCccHHHHHHhcccCCC
Confidence 367899999999995 58999999999999999999999998876554
No 455
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.28 E-value=6.2e-06 Score=63.74 Aligned_cols=118 Identities=21% Similarity=0.272 Sum_probs=62.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHhcCC-ccE
Q 024152 122 VEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGS-VDV 200 (271)
Q Consensus 122 i~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~~~~-~~l 200 (271)
++|.||||+|||+++..++.... -+++.++....... ........+...+.... ... +.+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~---~~~~~i~~~~~~~~---------------~~~~~~~~i~~~~~~~~-~~~~~~v 61 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG---FPFIEIDGSELISS---------------YAGDSEQKIRDFFKKAK-KSAKPCV 61 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT---SEEEEEETTHHHTS---------------STTHHHHHHHHHHHHHH-HTSTSEE
T ss_pred CEEECcCCCCeeHHHHHHHhhcc---cccccccccccccc---------------ccccccccccccccccc-cccccee
Confidence 57999999999999999998863 34555553211110 11112223333333332 333 899
Q ss_pred EEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhh-cCcEEEEEcccccccchhhhh
Q 024152 201 VVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSL-SQTILIFINQVFSINLNKIID 265 (271)
Q Consensus 201 vvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake-~~~~Vi~~sql~~~~~~~~l~ 265 (271)
++||.+..+.+.. ... ... .....+......+....+. .++.||+++.. ...+.+.+.
T Consensus 62 l~iDe~d~l~~~~--~~~-~~~---~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~-~~~i~~~l~ 120 (132)
T PF00004_consen 62 LFIDEIDKLFPKS--QPS-SSS---FEQRLLNQLLSLLDNPSSKNSRVIVIATTNS-PDKIDPALL 120 (132)
T ss_dssp EEEETGGGTSHHC--STS-SSH---HHHHHHHHHHHHHHTTTTTSSSEEEEEEESS-GGGSCHHHH
T ss_pred eeeccchhccccc--ccc-ccc---ccccccceeeecccccccccccceeEEeeCC-hhhCCHhHH
Confidence 9999998877533 110 111 1112222333333322222 45788888776 333444433
No 456
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.27 E-value=3.1e-06 Score=86.74 Aligned_cols=77 Identities=17% Similarity=0.186 Sum_probs=53.1
Q ss_pred HHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh--cCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHH
Q 024152 106 ALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR--QGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGE 183 (271)
Q Consensus 106 ~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~--~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~ 183 (271)
-|+.+.| =+.||-+++|.|++|+|||||+..+|+.... -.|. +.+++-.......++..||..|+-......|+.
T Consensus 806 LL~~V~G--~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gd-i~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVr 882 (1391)
T KOG0065|consen 806 LLNNVSG--AFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGD-ILISGFPKDQETFARVSGYVEQQDIHSPELTVR 882 (1391)
T ss_pred hhhcCce--EecCCceeehhcCCCCchHHHHHHHhcCcccceEEeE-EEECCeeCchhhhccccceeecccccCcccchH
Confidence 3455554 7899999999999999999999999986532 1233 455554444356677889887764444555655
Q ss_pred HH
Q 024152 184 QA 185 (271)
Q Consensus 184 e~ 185 (271)
|-
T Consensus 883 ES 884 (1391)
T KOG0065|consen 883 ES 884 (1391)
T ss_pred HH
Confidence 43
No 457
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=5.9e-06 Score=78.64 Aligned_cols=129 Identities=24% Similarity=0.368 Sum_probs=81.9
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152 114 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 193 (271)
Q Consensus 114 GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~ 193 (271)
-|+.|-.=++|.||||||||.||+.||+.+.. =|++.. .+.+-+ |+. --+.+.++..+...
T Consensus 218 lGv~PprGvLlHGPPGCGKT~lA~AiAgel~v-----Pf~~is---ApeivS--GvS--------GESEkkiRelF~~A- 278 (802)
T KOG0733|consen 218 LGVRPPRGVLLHGPPGCGKTSLANAIAGELGV-----PFLSIS---APEIVS--GVS--------GESEKKIRELFDQA- 278 (802)
T ss_pred cCCCCCCceeeeCCCCccHHHHHHHHhhhcCC-----ceEeec---chhhhc--ccC--------cccHHHHHHHHHHH-
Confidence 48999999999999999999999999998763 233211 011110 111 12334444444443
Q ss_pred hcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhh--cCcEEEEEcccc-cccchhhhhhh
Q 024152 194 RSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSL--SQTILIFINQVF-SINLNKIIDES 267 (271)
Q Consensus 194 ~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake--~~~~Vi~~sql~-~~~~~~~l~~s 267 (271)
....+++++||.+..+.|..+ ..|+.+..|.+++.+..+..+-.+ .|.+|+++.-.. -+.+-++||..
T Consensus 279 ~~~aPcivFiDeIDAI~pkRe------~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpaLRRa 349 (802)
T KOG0733|consen 279 KSNAPCIVFIDEIDAITPKRE------EAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPALRRA 349 (802)
T ss_pred hccCCeEEEeecccccccchh------hHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCHHHhcc
Confidence 346799999999999886433 356667777777777766554333 357777775433 34455666653
No 458
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.23 E-value=4.2e-05 Score=67.82 Aligned_cols=115 Identities=19% Similarity=0.187 Sum_probs=77.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhcC------CeEEEEcCCCCCCH-----HHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152 120 RVVEIYGPEASGKTTLALHVIAEAQRQG------GYCVFIDAEHALDP-----SLAETIGVKTENLLLAQPDCGEQALSL 188 (271)
Q Consensus 120 ~li~I~G~~G~GKTtl~~~ia~~~~~~~------g~v~~~~~e~~~~~-----~~~~~~g~~~~~~~~~~~~~~~e~~~~ 188 (271)
-.+.|+|++++|||+++..+.....+.. -+|+++......+. .+...+|.+... ..+..+....
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~-----~~~~~~~~~~ 136 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRP-----RDRVAKLEQQ 136 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCC-----CCCHHHHHHH
Confidence 4589999999999999999998765421 15777765433332 334455555421 2344555566
Q ss_pred HHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEc
Q 024152 189 VDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFIN 253 (271)
Q Consensus 189 ~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~s 253 (271)
+..+.+..+++++|||.+..+.. |.. ..++ +++..||.+..++.+|+|++.
T Consensus 137 ~~~llr~~~vrmLIIDE~H~lLa--------Gs~---~~qr---~~Ln~LK~L~NeL~ipiV~vG 187 (302)
T PF05621_consen 137 VLRLLRRLGVRMLIIDEFHNLLA--------GSY---RKQR---EFLNALKFLGNELQIPIVGVG 187 (302)
T ss_pred HHHHHHHcCCcEEEeechHHHhc--------ccH---HHHH---HHHHHHHHHhhccCCCeEEec
Confidence 66677778999999999988763 322 2344 445555556899999999885
No 459
>PF13173 AAA_14: AAA domain
Probab=98.22 E-value=1.2e-05 Score=62.73 Aligned_cols=97 Identities=19% Similarity=0.249 Sum_probs=60.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHhcCCc
Q 024152 119 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSV 198 (271)
Q Consensus 119 G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~ 198 (271)
+.+++|.|+.|+||||++++++.... ....++|++.+........ .+ ++.....+.. ..+.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~~~~~~~~~-----~~------------~~~~~~~~~~-~~~~ 62 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL-PPENILYINFDDPRDRRLA-----DP------------DLLEYFLELI-KPGK 62 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc-ccccceeeccCCHHHHHHh-----hh------------hhHHHHHHhh-ccCC
Confidence 57899999999999999999998776 4456788876544321100 00 0222222221 1267
Q ss_pred cEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhc-CcEEEEEcccc
Q 024152 199 DVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLS-QTILIFINQVF 256 (271)
Q Consensus 199 ~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~-~~~Vi~~sql~ 256 (271)
.+++||.+|... .....++.+.+.. ++.|+++....
T Consensus 63 ~~i~iDEiq~~~----------------------~~~~~lk~l~d~~~~~~ii~tgS~~ 99 (128)
T PF13173_consen 63 KYIFIDEIQYLP----------------------DWEDALKFLVDNGPNIKIILTGSSS 99 (128)
T ss_pred cEEEEehhhhhc----------------------cHHHHHHHHHHhccCceEEEEccch
Confidence 889999998874 1222333334444 78888887644
No 460
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.21 E-value=4.6e-06 Score=72.60 Aligned_cols=100 Identities=21% Similarity=0.320 Sum_probs=58.1
Q ss_pred HHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCC--eEE-EEcCCCCCCH-HHHHHcCCcCCcceecCCC
Q 024152 105 FALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGG--YCV-FIDAEHALDP-SLAETIGVKTENLLLAQPD 180 (271)
Q Consensus 105 ~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g--~v~-~~~~e~~~~~-~~~~~~g~~~~~~~~~~~~ 180 (271)
..+|.++. +.+|+.++|.|++|+|||||+..++.+...... .++ +...+..... .+.+.+ ..-+......
T Consensus 5 ~~id~~~~---i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I---~~~~v~~~~~ 78 (249)
T cd01128 5 RVVDLFAP---IGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSV---KGEVIASTFD 78 (249)
T ss_pred hheeeecc---cCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHh---ccEEEEecCC
Confidence 35676664 669999999999999999999999988776422 222 3244433322 233222 0111111111
Q ss_pred -C-------HHHHHHHHHHHHhcCCccEEEEcchhhhc
Q 024152 181 -C-------GEQALSLVDTLIRSGSVDVVVVDSVAALV 210 (271)
Q Consensus 181 -~-------~~e~~~~~~~l~~~~~~~lvvID~l~~~~ 210 (271)
. .....+.++.+...+.--++++|+++.+.
T Consensus 79 ~~~~~~~~~~~~~~~~a~~~~~~G~~vll~iDei~r~a 116 (249)
T cd01128 79 EPPERHVQVAEMVLEKAKRLVEHGKDVVILLDSITRLA 116 (249)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHhh
Confidence 1 12333445544444556689999998653
No 461
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=98.20 E-value=2.6e-06 Score=72.03 Aligned_cols=25 Identities=24% Similarity=0.244 Sum_probs=21.7
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 024152 116 LPKGRVVEIYGPEASGKTTLALHVIA 141 (271)
Q Consensus 116 l~~G~li~I~G~~G~GKTtl~~~ia~ 141 (271)
|.+| +++|.|+||+|||||+..+..
T Consensus 20 ~~~g-~~~i~G~NGsGKTTLl~ai~~ 44 (204)
T cd03240 20 FFSP-LTLIVGQNGAGKTTIIEALKY 44 (204)
T ss_pred cCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 4456 999999999999999998864
No 462
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.20 E-value=1.2e-05 Score=75.51 Aligned_cols=120 Identities=21% Similarity=0.254 Sum_probs=66.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHh
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 194 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~ 194 (271)
|+.++.-++|.||||+|||++++.++..... ..+.+..... .....| .....+..+-....
T Consensus 213 gi~~p~gVLL~GPPGTGKT~LAraIA~el~~---~fi~V~~seL----~~k~~G------------e~~~~vr~lF~~A~ 273 (438)
T PTZ00361 213 GIKPPKGVILYGPPGTGKTLLAKAVANETSA---TFLRVVGSEL----IQKYLG------------DGPKLVRELFRVAE 273 (438)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHhhCC---CEEEEecchh----hhhhcc------------hHHHHHHHHHHHHH
Confidence 7888889999999999999999999987642 2222221111 010011 11122221222233
Q ss_pred cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcccc
Q 024152 195 SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVF 256 (271)
Q Consensus 195 ~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~ 256 (271)
...+.+++||.+..+..........++. ..++.+.+.+..+..+....++.||++++..
T Consensus 274 ~~~P~ILfIDEID~l~~kR~~~~sgg~~---e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~ 332 (438)
T PTZ00361 274 ENAPSIVFIDEIDAIGTKRYDATSGGEK---EIQRTMLELLNQLDGFDSRGDVKVIMATNRI 332 (438)
T ss_pred hCCCcEEeHHHHHHHhccCCCCCCcccH---HHHHHHHHHHHHHhhhcccCCeEEEEecCCh
Confidence 4568899999998776422211111221 2234455555555444445678888887643
No 463
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.18 E-value=1.2e-05 Score=68.83 Aligned_cols=35 Identities=26% Similarity=0.243 Sum_probs=29.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHH-HhhcCCe
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAE-AQRQGGY 149 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~-~~~~~g~ 149 (271)
.+.+|++++|.||||+|||||++.+++. +..+.|.
T Consensus 27 ~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~ 62 (222)
T cd03287 27 SAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGS 62 (222)
T ss_pred EecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCC
Confidence 4568999999999999999999999994 4455553
No 464
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=1.8e-05 Score=72.52 Aligned_cols=63 Identities=25% Similarity=0.415 Sum_probs=51.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC---CHHHHHHcCCcCCcceecC
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLLLAQ 178 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~---~~~~~~~~g~~~~~~~~~~ 178 (271)
-+++|+.+++.|++|+||||++..+-.....+.|. +.++..... ...+++.+|+.||+-.+++
T Consensus 285 ~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~-I~id~qdir~vtq~slR~aIg~VPQDtvLFN 350 (497)
T COG5265 285 TIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGS-ITIDGQDIRDVTQQSLRRAIGIVPQDTVLFN 350 (497)
T ss_pred cccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCce-EEEcchhHHHhHHHHHHHHhCcCcccceehh
Confidence 57899999999999999999999999999999996 556554332 2356788999999865553
No 465
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.16 E-value=7.7e-06 Score=75.94 Aligned_cols=121 Identities=21% Similarity=0.298 Sum_probs=65.9
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152 114 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 193 (271)
Q Consensus 114 GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~ 193 (271)
-|++++.-+.|.||||+|||++++.++..... ..+.+... .......| ..+..+..+-...
T Consensus 174 ~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~---~fi~i~~s----~l~~k~~g------------e~~~~lr~lf~~A 234 (398)
T PTZ00454 174 IGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTA---TFIRVVGS----EFVQKYLG------------EGPRMVRDVFRLA 234 (398)
T ss_pred cCCCCCceEEEECCCCCCHHHHHHHHHHhcCC---CEEEEehH----HHHHHhcc------------hhHHHHHHHHHHH
Confidence 47889999999999999999999999886532 22222210 01111111 1111111111223
Q ss_pred hcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcccc
Q 024152 194 RSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVF 256 (271)
Q Consensus 194 ~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~ 256 (271)
....+.+++||.+..+.... .....+. . ...++.+.+.+..+..+....++.||++++.-
T Consensus 235 ~~~~P~ILfIDEID~i~~~r-~~~~~~~-d-~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~ 294 (398)
T PTZ00454 235 RENAPSIIFIDEVDSIATKR-FDAQTGA-D-REVQRILLELLNQMDGFDQTTNVKVIMATNRA 294 (398)
T ss_pred HhcCCeEEEEECHhhhcccc-ccccCCc-c-HHHHHHHHHHHHHhhccCCCCCEEEEEecCCc
Confidence 34578999999998876422 1110111 1 12234455555555443344577788887643
No 466
>PRK14974 cell division protein FtsY; Provisional
Probab=98.16 E-value=7.3e-05 Score=67.85 Aligned_cols=91 Identities=20% Similarity=0.176 Sum_probs=56.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC------HHHHHHcCCcCCcceecCCCCHHHHHHHHHH
Q 024152 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGVKTENLLLAQPDCGEQALSLVDT 191 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~------~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~ 191 (271)
++.++.++|+||+||||++..++..+...+.+|++++...... +.++..+|+..-.. ....+..++...+-.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~--~~g~dp~~v~~~ai~ 216 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKH--KYGADPAAVAYDAIE 216 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecc--cCCCCHHHHHHHHHH
Confidence 3579999999999999999999998887777888877543211 12344555533211 111233333222222
Q ss_pred HHhcCCccEEEEcchhhhc
Q 024152 192 LIRSGSVDVVVVDSVAALV 210 (271)
Q Consensus 192 l~~~~~~~lvvID~l~~~~ 210 (271)
.....+.++|+||....+.
T Consensus 217 ~~~~~~~DvVLIDTaGr~~ 235 (336)
T PRK14974 217 HAKARGIDVVLIDTAGRMH 235 (336)
T ss_pred HHHhCCCCEEEEECCCccC
Confidence 2233567899999876553
No 467
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.15 E-value=5.6e-05 Score=63.51 Aligned_cols=87 Identities=22% Similarity=0.252 Sum_probs=56.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC------HHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152 120 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 193 (271)
Q Consensus 120 ~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~------~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~ 193 (271)
.++.++||+|+||||.+-.+|......+.+|.+++...... +.+++.+++++-... ...+..++...+.+..
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~--~~~~~~~~~~~~l~~~ 79 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVAR--TESDPAEIAREALEKF 79 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESS--TTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhh--cchhhHHHHHHHHHHH
Confidence 47899999999999999999998887777899988654332 245666676542211 1223444443333333
Q ss_pred hcCCccEEEEcchhh
Q 024152 194 RSGSVDVVVVDSVAA 208 (271)
Q Consensus 194 ~~~~~~lvvID~l~~ 208 (271)
...+.++|+||....
T Consensus 80 ~~~~~D~vlIDT~Gr 94 (196)
T PF00448_consen 80 RKKGYDLVLIDTAGR 94 (196)
T ss_dssp HHTTSSEEEEEE-SS
T ss_pred hhcCCCEEEEecCCc
Confidence 456799999998543
No 468
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.14 E-value=1.8e-05 Score=67.34 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152 119 GRVVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 119 G~li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
+.+++|.||||+|||||++.++...
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~ 53 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIV 53 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHH
Confidence 3799999999999999999998644
No 469
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.14 E-value=2.1e-05 Score=66.10 Aligned_cols=35 Identities=26% Similarity=0.342 Sum_probs=28.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEcC
Q 024152 121 VVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDA 155 (271)
Q Consensus 121 li~I~G~~G~GKTtl~~~ia~~~~~~-~g~v~~~~~ 155 (271)
+++|+||+|+||||++..++...... ++.++.+..
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~ 38 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIED 38 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcC
Confidence 79999999999999999998888754 455555543
No 470
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.14 E-value=2.5e-05 Score=67.02 Aligned_cols=22 Identities=41% Similarity=0.736 Sum_probs=20.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLA 136 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~ 136 (271)
-+++|++++|+|+||||||||+
T Consensus 17 ~i~~Ge~~~l~G~sGsGKSTL~ 38 (226)
T cd03270 17 DIPRNKLVVITGVSGSGKSSLA 38 (226)
T ss_pred ecCCCcEEEEEcCCCCCHHHHH
Confidence 5779999999999999999996
No 471
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.14 E-value=3.1e-06 Score=70.39 Aligned_cols=37 Identities=27% Similarity=0.260 Sum_probs=31.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEE
Q 024152 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI 153 (271)
Q Consensus 116 l~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~ 153 (271)
+..|++++|+|+||+|||||++.+++...+..+. +.+
T Consensus 22 v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~-i~i 58 (186)
T cd01130 22 VEARKNILISGGTGSGKTTLLNALLAFIPPDERI-ITI 58 (186)
T ss_pred HhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCE-EEE
Confidence 4589999999999999999999999988766654 444
No 472
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.14 E-value=8.9e-06 Score=74.92 Aligned_cols=121 Identities=18% Similarity=0.263 Sum_probs=74.6
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCC--------eEEEEc--------CCCCCCHHHHHHcCCcCCcceec
Q 024152 114 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGG--------YCVFID--------AEHALDPSLAETIGVKTENLLLA 177 (271)
Q Consensus 114 GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g--------~v~~~~--------~e~~~~~~~~~~~g~~~~~~~~~ 177 (271)
.|+.-.+-|+|+||||+|||||++.+.+.+.|+.| .|-||+ .|.+....+++.+.++.+.-+..
T Consensus 608 FGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~ 687 (807)
T KOG0066|consen 608 FGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEALNGEETPVEYLQRKFNLPYQEARKQ 687 (807)
T ss_pred ccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhhccccCHHHHHHHhcCCChHHHHHH
Confidence 58889999999999999999999999998887644 345564 22333334555566555432110
Q ss_pred ---------------CCCCHHH--HHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHH
Q 024152 178 ---------------QPDCGEQ--ALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSH 240 (271)
Q Consensus 178 ---------------~~~~~~e--~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~ 240 (271)
..++.-+ -++++. +.-..++.+|+|..+..... +.+..|..
T Consensus 688 LG~fGL~sHAHTikikdLSGGQKaRValae--Lal~~PDvlILDEPTNNLDI--------------------ESIDALaE 745 (807)
T KOG0066|consen 688 LGTFGLASHAHTIKIKDLSGGQKARVALAE--LALGGPDVLILDEPTNNLDI--------------------ESIDALAE 745 (807)
T ss_pred hhhhhhhhccceEeeeecCCcchHHHHHHH--HhcCCCCEEEecCCCCCcch--------------------hhHHHHHH
Confidence 1111111 122222 22357999999987655420 22333444
Q ss_pred HHhhcCcEEEEEcccc
Q 024152 241 SLSLSQTILIFINQVF 256 (271)
Q Consensus 241 lake~~~~Vi~~sql~ 256 (271)
-..+++-.||++||-.
T Consensus 746 AIney~GgVi~VsHDe 761 (807)
T KOG0066|consen 746 AINEYNGGVIMVSHDE 761 (807)
T ss_pred HHHhccCcEEEEeccc
Confidence 4567888999999865
No 473
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.13 E-value=5.7e-06 Score=86.13 Aligned_cols=38 Identities=29% Similarity=0.554 Sum_probs=34.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEE
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVF 152 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~ 152 (271)
-+++|++++|+|+.|+|||+|+..++++....+|.|.+
T Consensus 543 ~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v 580 (1381)
T KOG0054|consen 543 EIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAV 580 (1381)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEE
Confidence 57899999999999999999999999999988776443
No 474
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.12 E-value=7.4e-05 Score=68.81 Aligned_cols=86 Identities=17% Similarity=0.239 Sum_probs=57.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC----H--HHHHHcCCcCCcceecCCCCHHHHHHHHHHH
Q 024152 119 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD----P--SLAETIGVKTENLLLAQPDCGEQALSLVDTL 192 (271)
Q Consensus 119 G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~----~--~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l 192 (271)
+.+++|+|++|+||||++..+|..+...+.+|.+++...... + .++...+++ +....+..++...+..+
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgip-----v~v~~d~~~L~~aL~~l 315 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFE-----VIAVRDEAAMTRALTYF 315 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCc-----EEecCCHHHHHHHHHHH
Confidence 469999999999999999999998887777888887653221 1 122233322 22223556665555554
Q ss_pred HhcCCccEEEEcchhhh
Q 024152 193 IRSGSVDVVVVDSVAAL 209 (271)
Q Consensus 193 ~~~~~~~lvvID~l~~~ 209 (271)
....+.++|+||.....
T Consensus 316 k~~~~~DvVLIDTaGRs 332 (436)
T PRK11889 316 KEEARVDYILIDTAGKN 332 (436)
T ss_pred HhccCCCEEEEeCcccc
Confidence 43346899999986543
No 475
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.11 E-value=0.00012 Score=64.44 Aligned_cols=87 Identities=18% Similarity=0.234 Sum_probs=58.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCH---HH---HHHcCCcCCcceecCCCCHHHHHHHHHH
Q 024152 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP---SL---AETIGVKTENLLLAQPDCGEQALSLVDT 191 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~---~~---~~~~g~~~~~~~~~~~~~~~e~~~~~~~ 191 (271)
+|+.++++|+||+||||++..++..+...+..+.+++....... .+ +...++ .+....+..++...++.
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~-----~~~~~~~~~~l~~~l~~ 148 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGF-----EVIAVRDEAAMTRALTY 148 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCc-----eEEecCCHHHHHHHHHH
Confidence 77999999999999999999999988776678888876533211 12 222232 22222455565555555
Q ss_pred HHhcCCccEEEEcchhhh
Q 024152 192 LIRSGSVDVVVVDSVAAL 209 (271)
Q Consensus 192 l~~~~~~~lvvID~l~~~ 209 (271)
+....+.++++||.....
T Consensus 149 l~~~~~~D~ViIDt~Gr~ 166 (270)
T PRK06731 149 FKEEARVDYILIDTAGKN 166 (270)
T ss_pred HHhcCCCCEEEEECCCCC
Confidence 544457899999986554
No 476
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=98.11 E-value=5.8e-06 Score=70.27 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=22.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHH
Q 024152 117 PKGRVVEIYGPEASGKTTLALHVIA 141 (271)
Q Consensus 117 ~~G~li~I~G~~G~GKTtl~~~ia~ 141 (271)
.+|++++|.|+||+|||||+..|+.
T Consensus 26 ~~~~~~~i~G~NGsGKSTll~~i~~ 50 (213)
T cd03279 26 DNNGLFLICGPTGAGKSTILDAITY 50 (213)
T ss_pred CccCEEEEECCCCCCHHHHHHHhee
Confidence 4588999999999999999999874
No 477
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.11 E-value=1.2e-05 Score=71.44 Aligned_cols=75 Identities=15% Similarity=0.096 Sum_probs=49.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHh--hcCCeEEEEcCCCCCC-HHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152 118 KGRVVEIYGPEASGKTTLALHVIAEAQ--RQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 193 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTtl~~~ia~~~~--~~~g~v~~~~~e~~~~-~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~ 193 (271)
.--+++|+|+||||||||+..+...+. +.++.|.+++...-.. .......++. ++.......+.+.++..+..+.
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~-~~~g~P~s~D~~~l~~~L~~Lk 138 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQVLKERNLM-KKKGFPESYDMHRLVKFLSDLK 138 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHHHHHcCCc-cccCCChhccHHHHHHHHHHHH
Confidence 446999999999999999999988887 4456777776554322 2223334543 4444455567777766655543
No 478
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.11 E-value=6.3e-05 Score=66.42 Aligned_cols=89 Identities=19% Similarity=0.277 Sum_probs=55.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC------HHHHHHcCCcCCcceecCCCCHHHHH-HHHH
Q 024152 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGVKTENLLLAQPDCGEQAL-SLVD 190 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~------~~~~~~~g~~~~~~~~~~~~~~~e~~-~~~~ 190 (271)
++.++.++|+||+||||++..+|..+...+.+|.+++...... ..++...++..- ......+..+.. ..+.
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~--~~~~~~dp~~~~~~~l~ 148 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVI--KQKEGADPAAVAFDAIQ 148 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEE--eCCCCCCHHHHHHHHHH
Confidence 5689999999999999999999998888777899988664221 123444553211 011112232322 2222
Q ss_pred HHHhcCCccEEEEcchhhh
Q 024152 191 TLIRSGSVDVVVVDSVAAL 209 (271)
Q Consensus 191 ~l~~~~~~~lvvID~l~~~ 209 (271)
. ....+.++++||.....
T Consensus 149 ~-~~~~~~D~ViIDT~G~~ 166 (272)
T TIGR00064 149 K-AKARNIDVVLIDTAGRL 166 (272)
T ss_pred H-HHHCCCCEEEEeCCCCC
Confidence 2 22457899999986544
No 479
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.10 E-value=3.3e-05 Score=63.18 Aligned_cols=86 Identities=22% Similarity=0.244 Sum_probs=52.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCH---HH---HHHcCCcCCcceecCCCCHHHHHHHHHHHHh
Q 024152 121 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP---SL---AETIGVKTENLLLAQPDCGEQALSLVDTLIR 194 (271)
Q Consensus 121 li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~---~~---~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~ 194 (271)
++++.|+||+||||++.+++..+...+.+|++++.+..... .+ ....++..- ......+..++.........
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 79 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVF--EEGEGKDPVSIAKRAIEHAR 79 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEE--ecCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999988887778899887643221 11 122222211 11122344444432222233
Q ss_pred cCCccEEEEcchhh
Q 024152 195 SGSVDVVVVDSVAA 208 (271)
Q Consensus 195 ~~~~~lvvID~l~~ 208 (271)
..+.++++||....
T Consensus 80 ~~~~d~viiDt~g~ 93 (173)
T cd03115 80 EENFDVVIVDTAGR 93 (173)
T ss_pred hCCCCEEEEECccc
Confidence 45788999998554
No 480
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.10 E-value=3.9e-05 Score=70.32 Aligned_cols=90 Identities=20% Similarity=0.265 Sum_probs=60.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC--H-H---HHHHcCCcCCcceecCCCCHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--P-S---LAETIGVKTENLLLAQPDCGEQALSL 188 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~--~-~---~~~~~g~~~~~~~~~~~~~~~e~~~~ 188 (271)
.+.+|.++.|+||+|+||||++..++..+...+.+|.+++...-.. . . ++...+++ +....+..++...
T Consensus 202 ~~~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvp-----v~~~~dp~dL~~a 276 (407)
T PRK12726 202 DLSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVE-----LIVATSPAELEEA 276 (407)
T ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCC-----EEecCCHHHHHHH
Confidence 3568999999999999999999999988877777888888653322 1 2 22233332 1123456666555
Q ss_pred HHHHHhcCCccEEEEcchhhh
Q 024152 189 VDTLIRSGSVDVVVVDSVAAL 209 (271)
Q Consensus 189 ~~~l~~~~~~~lvvID~l~~~ 209 (271)
+..+....+.++|+||.....
T Consensus 277 l~~l~~~~~~D~VLIDTAGr~ 297 (407)
T PRK12726 277 VQYMTYVNCVDHILIDTVGRN 297 (407)
T ss_pred HHHHHhcCCCCEEEEECCCCC
Confidence 555443356899999986543
No 481
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=98.10 E-value=2.3e-05 Score=69.52 Aligned_cols=82 Identities=22% Similarity=0.336 Sum_probs=54.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHHhhc-C-CeEEEEcCCCCCC------HHHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152 117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQ-G-GYCVFIDAEHALD------PSLAETIGVKTENLLLAQPDCGEQALSL 188 (271)
Q Consensus 117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~~~-~-g~v~~~~~e~~~~------~~~~~~~g~~~~~~~~~~~~~~~e~~~~ 188 (271)
+.+.+++|+||+|+||||++..++..+... + .+|.+++.+.... ..++..+++++. ...+..++...
T Consensus 192 ~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~-----~~~~~~~l~~~ 266 (282)
T TIGR03499 192 EQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVK-----VARDPKELRKA 266 (282)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCcee-----ccCCHHHHHHH
Confidence 467899999999999999999999988865 4 5899998764321 123334444331 12344555444
Q ss_pred HHHHHhcCCccEEEEcch
Q 024152 189 VDTLIRSGSVDVVVVDSV 206 (271)
Q Consensus 189 ~~~l~~~~~~~lvvID~l 206 (271)
+..+ .+.++|+||..
T Consensus 267 l~~~---~~~d~vliDt~ 281 (282)
T TIGR03499 267 LDRL---RDKDLILIDTA 281 (282)
T ss_pred HHHc---cCCCEEEEeCC
Confidence 4443 34799999963
No 482
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=5e-05 Score=68.33 Aligned_cols=117 Identities=24% Similarity=0.316 Sum_probs=70.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHh
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 194 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~ 194 (271)
|+.|-.=++++||||+|||-||+.+|.... +.|+-- .......+.+|--+ --+.|++. +.+
T Consensus 181 GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~-----AtFIrv--vgSElVqKYiGEGa--------RlVRelF~----lAr 241 (406)
T COG1222 181 GIDPPKGVLLYGPPGTGKTLLAKAVANQTD-----ATFIRV--VGSELVQKYIGEGA--------RLVRELFE----LAR 241 (406)
T ss_pred CCCCCCceEeeCCCCCcHHHHHHHHHhccC-----ceEEEe--ccHHHHHHHhccch--------HHHHHHHH----HHh
Confidence 899999999999999999999998876443 233311 01123333333111 11234444 344
Q ss_pred cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEc
Q 024152 195 SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFIN 253 (271)
Q Consensus 195 ~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~s 253 (271)
++.++.|+||.+-.+-....-++..|++ ..||-+.+.+.+|.-+=..-|+-||+.+
T Consensus 242 ekaPsIIFiDEIDAIg~kR~d~~t~gDr---EVQRTmleLL~qlDGFD~~~nvKVI~AT 297 (406)
T COG1222 242 EKAPSIIFIDEIDAIGAKRFDSGTSGDR---EVQRTMLELLNQLDGFDPRGNVKVIMAT 297 (406)
T ss_pred hcCCeEEEEechhhhhcccccCCCCchH---HHHHHHHHHHHhccCCCCCCCeEEEEec
Confidence 5789999999998876533333333332 4455566666666554444566777654
No 483
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.07 E-value=4.4e-05 Score=64.54 Aligned_cols=30 Identities=30% Similarity=0.278 Sum_probs=26.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHh
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQ 144 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~ 144 (271)
....|++++|.||||+|||||++.+++...
T Consensus 25 ~~~~~~~~~l~G~n~~GKstll~~i~~~~~ 54 (204)
T cd03282 25 TRGSSRFHIITGPNMSGKSTYLKQIALLAI 54 (204)
T ss_pred eeCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456889999999999999999999987654
No 484
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=98.07 E-value=2.4e-05 Score=66.77 Aligned_cols=25 Identities=32% Similarity=0.432 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 024152 120 RVVEIYGPEASGKTTLALHVIAEAQ 144 (271)
Q Consensus 120 ~li~I~G~~G~GKTtl~~~ia~~~~ 144 (271)
++++|.||||+|||||++.++....
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~~~~ 55 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVALIAL 55 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHH
Confidence 8999999999999999999987543
No 485
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.06 E-value=8.7e-05 Score=69.58 Aligned_cols=84 Identities=21% Similarity=0.284 Sum_probs=55.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHHh-h-cCCeEEEEcCCCCCC------HHHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152 117 PKGRVVEIYGPEASGKTTLALHVIAEAQ-R-QGGYCVFIDAEHALD------PSLAETIGVKTENLLLAQPDCGEQALSL 188 (271)
Q Consensus 117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~-~-~~g~v~~~~~e~~~~------~~~~~~~g~~~~~~~~~~~~~~~e~~~~ 188 (271)
.+|.++.|+||+|+||||++..++..+. . .+.+|.+++.+.... ..+++..+++.. ...+..++...
T Consensus 219 ~~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~-----~~~~~~~l~~~ 293 (424)
T PRK05703 219 KQGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVE-----VVYDPKELAKA 293 (424)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceE-----ccCCHHhHHHH
Confidence 4588999999999999999999999887 3 345899998654211 123344454331 22344555544
Q ss_pred HHHHHhcCCccEEEEcchhh
Q 024152 189 VDTLIRSGSVDVVVVDSVAA 208 (271)
Q Consensus 189 ~~~l~~~~~~~lvvID~l~~ 208 (271)
+..+ .+.++|+||....
T Consensus 294 l~~~---~~~DlVlIDt~G~ 310 (424)
T PRK05703 294 LEQL---RDCDVILIDTAGR 310 (424)
T ss_pred HHHh---CCCCEEEEeCCCC
Confidence 4443 3589999997643
No 486
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.05 E-value=6.1e-05 Score=66.38 Aligned_cols=116 Identities=18% Similarity=0.194 Sum_probs=68.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHHh--hcCCeEEEEcCCCCCC-H----HHHHHcCCcCCcceecCCCCHHHHHHHH
Q 024152 117 PKGRVVEIYGPEASGKTTLALHVIAEAQ--RQGGYCVFIDAEHALD-P----SLAETIGVKTENLLLAQPDCGEQALSLV 189 (271)
Q Consensus 117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~--~~~g~v~~~~~e~~~~-~----~~~~~~g~~~~~~~~~~~~~~~e~~~~~ 189 (271)
+...+++|.|.+|+||||||..++.... ...+.++|++...... . .+...++...... ....+.++....+
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~~~~l 94 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSI--SDPKDIEELQDQL 94 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STS--SCCSSHHHHHHHH
T ss_pred CCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccc
Confidence 6889999999999999999999997733 3345677876443222 2 3344455443332 2345666777666
Q ss_pred HHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcccc
Q 024152 190 DTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVF 256 (271)
Q Consensus 190 ~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~ 256 (271)
.+.... +..++|+|.+.... .+......+ .....++.||++|...
T Consensus 95 ~~~L~~-~~~LlVlDdv~~~~-------------------~~~~l~~~~--~~~~~~~kilvTTR~~ 139 (287)
T PF00931_consen 95 RELLKD-KRCLLVLDDVWDEE-------------------DLEELREPL--PSFSSGSKILVTTRDR 139 (287)
T ss_dssp HHHHCC-TSEEEEEEEE-SHH-------------------HH---------HCHHSS-EEEEEESCG
T ss_pred hhhhcc-ccceeeeeeecccc-------------------ccccccccc--cccccccccccccccc
Confidence 666543 37899999864332 111111122 1234688999998754
No 487
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.04 E-value=1.7e-05 Score=67.91 Aligned_cols=37 Identities=27% Similarity=0.273 Sum_probs=30.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhh--cCCeEEEEcCCC
Q 024152 121 VVEIYGPEASGKTTLALHVIAEAQR--QGGYCVFIDAEH 157 (271)
Q Consensus 121 li~I~G~~G~GKTtl~~~ia~~~~~--~~g~v~~~~~e~ 157 (271)
+++|+|+||||||||+..++..+.+ .++.+.+++...
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~ 39 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDG 39 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCc
Confidence 5899999999999999999998875 455677776543
No 488
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.04 E-value=3.6e-05 Score=67.29 Aligned_cols=94 Identities=19% Similarity=0.244 Sum_probs=50.9
Q ss_pred CCCCCc-EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEE-cCCCCCC---HHHHHHcCCcCCcceecCCCCHHHHHHHH
Q 024152 115 GLPKGR-VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI-DAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSLV 189 (271)
Q Consensus 115 Gl~~G~-li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~-~~e~~~~---~~~~~~~g~~~~~~~~~~~~~~~e~~~~~ 189 (271)
+++++. +++|.|+||+||||+++.++....+..-.+.++ ....... ..++..+|+..+.... ......+...+
T Consensus 38 ~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~--~~~~~~l~~~l 115 (269)
T TIGR03015 38 GLSQREGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDK--AALLRELEDFL 115 (269)
T ss_pred HHhcCCCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCH--HHHHHHHHHHH
Confidence 454544 899999999999999999987766432222222 2211111 1344555654332100 00011222333
Q ss_pred HHHHhcCCccEEEEcchhhhc
Q 024152 190 DTLIRSGSVDVVVVDSVAALV 210 (271)
Q Consensus 190 ~~l~~~~~~~lvvID~l~~~~ 210 (271)
..........+++||..+.+.
T Consensus 116 ~~~~~~~~~~vliiDe~~~l~ 136 (269)
T TIGR03015 116 IEQFAAGKRALLVVDEAQNLT 136 (269)
T ss_pred HHHHhCCCCeEEEEECcccCC
Confidence 333335566789999987664
No 489
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=98.04 E-value=2.3e-05 Score=74.37 Aligned_cols=45 Identities=27% Similarity=0.358 Sum_probs=35.5
Q ss_pred CcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCe
Q 024152 103 GSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGY 149 (271)
Q Consensus 103 g~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~ 149 (271)
|.--++.+.- -++.|+-..|+||+|||||+|++.+++...-.+|.
T Consensus 447 g~~lie~Ls~--~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~ 491 (659)
T KOG0060|consen 447 GDLLIENLSL--EVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGK 491 (659)
T ss_pred Cceeeeeeee--EecCCCeEEEECCCCCchhHHHHHHhcccccCCCe
Confidence 4333444443 78899999999999999999999999998855544
No 490
>PRK00889 adenylylsulfate kinase; Provisional
Probab=98.04 E-value=8.9e-06 Score=66.79 Aligned_cols=40 Identities=25% Similarity=0.331 Sum_probs=35.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCC
Q 024152 117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 156 (271)
Q Consensus 117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e 156 (271)
++|+++.|.|.||+||||++..++..+...++.+.+++.+
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D 41 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGD 41 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCc
Confidence 6899999999999999999999999998777778888754
No 491
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.04 E-value=2.3e-05 Score=67.30 Aligned_cols=74 Identities=20% Similarity=0.212 Sum_probs=47.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEE-EcCCCCCC-HHHHHHcCCcCCcceecCCCCHHHHHHHHHHH
Q 024152 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVF-IDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTL 192 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~-~~~e~~~~-~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l 192 (271)
+..+++|.|+||+|||||+..++....+.++.+.. ++...... .......++..+ .......+.+.+...+..+
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~~~~~~~~g~~~~-~~~~~~~d~~~~~~~l~~l 107 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLDNAVLDAHGLRPR-KGAPETFDVAGLAALLRRL 107 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCCHHHHHhcccccc-cCCCCCCCHHHHHHHHHHH
Confidence 67899999999999999999999999988886544 54332221 222333444432 2223345566665554443
No 492
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=98.04 E-value=1.1e-05 Score=67.50 Aligned_cols=38 Identities=29% Similarity=0.395 Sum_probs=31.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEE
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVF 152 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~ 152 (271)
.+|.|+-+.++|.||+|||||++.+++..-..++.|.+
T Consensus 36 dlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~V 73 (291)
T KOG2355|consen 36 DLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQV 73 (291)
T ss_pred ccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEE
Confidence 57899999999999999999999998866554554433
No 493
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=98.03 E-value=5e-05 Score=69.67 Aligned_cols=30 Identities=30% Similarity=0.511 Sum_probs=27.9
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHh
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQ 144 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~ 144 (271)
-+.+|++++|.|.+||||||++.+|++...
T Consensus 405 ~ikpGdvvaVvGqSGaGKttllRmi~G~~~ 434 (593)
T COG2401 405 EIKPGDVVAVVGQSGAGKTTLLRMILGAQK 434 (593)
T ss_pred EecCCCeEEEEecCCCCcchHHHHHHHHhh
Confidence 467999999999999999999999999876
No 494
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.03 E-value=5.2e-05 Score=63.65 Aligned_cols=40 Identities=28% Similarity=0.311 Sum_probs=34.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCC
Q 024152 117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 156 (271)
Q Consensus 117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e 156 (271)
++|.++.|.|.||+|||||+..++..+...+..+++++.+
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d 61 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGD 61 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCE
Confidence 6899999999999999999999999887766666777654
No 495
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=98.02 E-value=4.4e-06 Score=68.19 Aligned_cols=57 Identities=23% Similarity=0.356 Sum_probs=37.7
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcC--CCCCCHHHHHHcCCcC
Q 024152 114 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA--EHALDPSLAETIGVKT 171 (271)
Q Consensus 114 GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~--e~~~~~~~~~~~g~~~ 171 (271)
|-+..|+++-++||||+|||||.-.+++... .+|.|.|-+. +.....++++.-.|..
T Consensus 20 ~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~-~sGsi~~~G~~l~~~~~~eLArhRAYLs 78 (248)
T COG4138 20 GEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GSGSIQFAGQPLEAWSATELARHRAYLS 78 (248)
T ss_pred cccccceEEEEECCCCccHHHHHHHHhCCCC-CCceEEECCcchhHHhHhHHHHHHHHHh
Confidence 4677999999999999999999888887654 4455444332 2222234555444443
No 496
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.02 E-value=3e-05 Score=62.40 Aligned_cols=29 Identities=31% Similarity=0.397 Sum_probs=24.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhcCC
Q 024152 120 RVVEIYGPEASGKTTLALHVIAEAQRQGG 148 (271)
Q Consensus 120 ~li~I~G~~G~GKTtl~~~ia~~~~~~~g 148 (271)
--+.|.|+||+||||+++-++..+...+-
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~ 34 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGY 34 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCc
Confidence 35789999999999999999988886643
No 497
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.02 E-value=3.2e-05 Score=66.29 Aligned_cols=30 Identities=27% Similarity=0.290 Sum_probs=25.9
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHh
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQ 144 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~ 144 (271)
+.+++++++|.||||+||||+++.++....
T Consensus 26 ~~~~~~~~~l~G~n~~GKstll~~i~~~~~ 55 (222)
T cd03285 26 TRGKSRFLIITGPNMGGKSTYIRQIGVIVL 55 (222)
T ss_pred eecCCeEEEEECCCCCChHHHHHHHHHHHH
Confidence 455899999999999999999999886543
No 498
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=98.02 E-value=3.3e-05 Score=64.17 Aligned_cols=24 Identities=38% Similarity=0.360 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 024152 121 VVEIYGPEASGKTTLALHVIAEAQ 144 (271)
Q Consensus 121 li~I~G~~G~GKTtl~~~ia~~~~ 144 (271)
+++|.|+||+|||||++.++....
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~ 24 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVI 24 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHH
Confidence 478999999999999999995443
No 499
>PRK08181 transposase; Validated
Probab=98.01 E-value=3e-05 Score=68.27 Aligned_cols=109 Identities=17% Similarity=0.241 Sum_probs=65.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHhcC
Q 024152 117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSG 196 (271)
Q Consensus 117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~~~ 196 (271)
..++-+.|+||||+|||.|+..++..+...+..|+|++...... .+.... ...+..+. +..+ .
T Consensus 104 ~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~-----~l~~a~------~~~~~~~~---l~~l---~ 166 (269)
T PRK08181 104 AKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQ-----KLQVAR------RELQLESA---IAKL---D 166 (269)
T ss_pred hcCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHH-----HHHHHH------hCCcHHHH---HHHH---h
Confidence 37788999999999999999999998887777888887432221 111000 11122222 2222 3
Q ss_pred CccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccccc
Q 024152 197 SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFSIN 259 (271)
Q Consensus 197 ~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~~~ 259 (271)
.+++++||.+..... .. ..+..+-+.+.. ..+ +.++|++|++....
T Consensus 167 ~~dLLIIDDlg~~~~---------~~---~~~~~Lf~lin~----R~~-~~s~IiTSN~~~~~ 212 (269)
T PRK08181 167 KFDLLILDDLAYVTK---------DQ---AETSVLFELISA----RYE-RRSILITANQPFGE 212 (269)
T ss_pred cCCEEEEeccccccC---------CH---HHHHHHHHHHHH----HHh-CCCEEEEcCCCHHH
Confidence 689999999876542 10 111222222222 123 36899998887443
No 500
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.01 E-value=7e-05 Score=64.69 Aligned_cols=39 Identities=15% Similarity=0.323 Sum_probs=32.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCC
Q 024152 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 156 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e 156 (271)
.+..+.|.||+|+|||+|+..++..+...+..+.|++.+
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~ 82 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLD 82 (235)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHH
Confidence 345789999999999999999998877767788888653
Done!