Query 024152
Match_columns 271
No_of_seqs 315 out of 2476
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 03:17:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024152.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024152hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2q6t_A DNAB replication FORK h 100.0 2.1E-34 7.1E-39 269.1 12.8 240 2-267 103-382 (444)
2 3bgw_A DNAB-like replicative h 100.0 6.7E-34 2.3E-38 265.3 15.0 232 2-267 103-379 (444)
3 2r6a_A DNAB helicase, replicat 100.0 1.8E-33 6E-38 263.5 13.2 238 2-267 106-383 (454)
4 3hr8_A Protein RECA; alpha and 100.0 2.5E-30 8.5E-35 234.1 18.5 196 64-259 6-201 (356)
5 3bh0_A DNAB-like replicative h 100.0 2.4E-29 8.1E-34 225.0 18.1 205 38-267 3-250 (315)
6 1xp8_A RECA protein, recombina 100.0 3.7E-28 1.3E-32 221.0 21.1 196 63-259 19-214 (366)
7 1u94_A RECA protein, recombina 100.0 3.2E-28 1.1E-32 220.8 19.2 193 65-258 10-202 (356)
8 4a1f_A DNAB helicase, replicat 100.0 8E-29 2.7E-33 222.7 14.8 182 64-267 3-225 (338)
9 2zr9_A Protein RECA, recombina 100.0 4.1E-28 1.4E-32 219.7 19.2 194 64-258 7-200 (349)
10 3io5_A Recombination and repai 99.9 3.3E-27 1.1E-31 208.6 16.3 161 96-257 3-173 (333)
11 3cmu_A Protein RECA, recombina 99.9 1.7E-25 5.7E-30 235.2 20.7 195 64-259 329-523 (2050)
12 3cmw_A Protein RECA, recombina 99.9 1.9E-25 6.6E-30 232.7 18.5 192 66-258 331-522 (1706)
13 3cmw_A Protein RECA, recombina 99.9 7.5E-24 2.6E-28 220.8 20.4 195 64-259 1377-1571(1706)
14 3cmu_A Protein RECA, recombina 99.9 1.2E-23 4.1E-28 221.3 20.5 195 64-259 1721-1915(2050)
15 2z43_A DNA repair and recombin 99.9 8.6E-23 2.9E-27 183.0 15.9 171 96-271 85-280 (324)
16 1v5w_A DMC1, meiotic recombina 99.9 8.5E-23 2.9E-27 184.5 15.5 159 96-259 100-277 (343)
17 1q57_A DNA primase/helicase; d 99.9 5.1E-23 1.7E-27 194.8 13.4 151 96-257 220-405 (503)
18 2i1q_A DNA repair and recombin 99.9 5.2E-23 1.8E-27 184.1 12.4 159 96-259 76-262 (322)
19 1n0w_A DNA repair protein RAD5 99.9 7E-22 2.4E-26 168.6 16.5 159 96-259 2-177 (243)
20 2zts_A Putative uncharacterize 99.9 2.3E-22 8E-27 172.1 11.3 150 95-257 7-183 (251)
21 3lda_A DNA repair protein RAD5 99.9 1.5E-21 5.2E-26 179.3 16.2 157 96-257 156-329 (400)
22 2dr3_A UPF0273 protein PH0284; 99.9 3.9E-21 1.3E-25 164.2 13.3 146 98-258 3-175 (247)
23 1pzn_A RAD51, DNA repair and r 99.8 2.4E-20 8.2E-25 168.8 15.1 170 96-270 109-307 (349)
24 2cvh_A DNA repair and recombin 99.8 1.8E-20 6.1E-25 157.5 12.2 146 99-257 1-157 (220)
25 4a74_A DNA repair and recombin 99.8 6.7E-20 2.3E-24 154.9 15.0 158 96-258 3-182 (231)
26 1cr0_A DNA primase/helicase; R 99.8 6.2E-20 2.1E-24 162.0 13.8 150 96-256 13-197 (296)
27 2w0m_A SSO2452; RECA, SSPF, un 99.8 1.9E-19 6.5E-24 152.1 14.6 144 98-256 3-168 (235)
28 2ehv_A Hypothetical protein PH 99.8 1.5E-18 5.3E-23 148.3 10.6 150 96-258 8-184 (251)
29 1nlf_A Regulatory protein REPA 99.7 6.8E-18 2.3E-22 147.8 9.1 146 97-258 10-183 (279)
30 1tf7_A KAIC; homohexamer, hexa 99.6 1.2E-14 4.2E-19 138.0 15.0 147 96-256 259-417 (525)
31 3rlf_A Maltose/maltodextrin im 99.5 4.1E-15 1.4E-19 135.3 3.1 139 115-257 25-195 (381)
32 1tf7_A KAIC; homohexamer, hexa 99.5 9.3E-14 3.2E-18 131.9 11.4 149 96-258 17-187 (525)
33 3fvq_A Fe(3+) IONS import ATP- 99.5 4E-15 1.4E-19 134.5 1.6 139 115-257 26-200 (359)
34 3tui_C Methionine import ATP-b 99.5 1.2E-14 4E-19 131.6 4.5 140 115-257 50-225 (366)
35 2vhj_A Ntpase P4, P4; non- hyd 99.5 1.3E-14 4.6E-19 128.6 4.4 130 98-255 104-235 (331)
36 3d31_A Sulfate/molybdate ABC t 99.5 2.5E-14 8.5E-19 129.0 6.0 138 115-256 22-188 (348)
37 3tif_A Uncharacterized ABC tra 99.5 7.8E-14 2.7E-18 119.3 8.6 140 115-257 27-207 (235)
38 1z47_A CYSA, putative ABC-tran 99.5 1.1E-14 3.7E-19 131.6 2.5 139 115-257 37-207 (355)
39 2it1_A 362AA long hypothetical 99.5 1.5E-14 5E-19 131.1 3.1 139 115-257 25-195 (362)
40 1v43_A Sugar-binding transport 99.4 2.5E-14 8.5E-19 130.0 3.2 138 115-256 33-202 (372)
41 2yyz_A Sugar ABC transporter, 99.4 1.6E-14 5.4E-19 130.8 1.7 139 115-257 25-195 (359)
42 3bs4_A Uncharacterized protein 99.4 1.6E-12 5.3E-17 112.5 13.6 73 99-172 2-76 (260)
43 2olj_A Amino acid ABC transpor 99.4 6E-14 2E-18 121.9 4.3 140 115-256 46-219 (263)
44 1g29_1 MALK, maltose transport 99.4 2E-14 6.7E-19 130.8 1.3 138 115-256 25-200 (372)
45 1b0u_A Histidine permease; ABC 99.4 8.4E-14 2.9E-18 121.0 4.4 138 115-256 28-213 (262)
46 1oxx_K GLCV, glucose, ABC tran 99.4 1.4E-14 4.7E-19 131.0 -1.3 139 115-257 27-202 (353)
47 2pcj_A ABC transporter, lipopr 99.4 2E-13 6.8E-18 115.9 5.5 138 115-257 26-201 (224)
48 3gfo_A Cobalt import ATP-bindi 99.4 9.2E-14 3.2E-18 121.5 3.4 139 115-257 30-205 (275)
49 1vpl_A ABC transporter, ATP-bi 99.4 2.4E-13 8.1E-18 117.7 5.3 138 115-256 37-206 (256)
50 4g1u_C Hemin import ATP-bindin 99.4 2.9E-13 1E-17 117.8 5.8 139 115-256 33-208 (266)
51 2onk_A Molybdate/tungstate ABC 99.4 2.6E-13 8.8E-18 116.4 4.2 133 115-256 21-187 (240)
52 1sgw_A Putative ABC transporte 99.3 2.7E-13 9.2E-18 114.3 2.6 138 115-257 31-194 (214)
53 1g6h_A High-affinity branched- 99.3 6.8E-13 2.3E-17 114.8 5.0 74 115-188 29-105 (257)
54 2yz2_A Putative ABC transporte 99.3 1.3E-12 4.4E-17 113.7 5.9 140 115-257 29-199 (266)
55 1ji0_A ABC transporter; ATP bi 99.3 4.8E-13 1.6E-17 114.7 2.0 140 115-256 28-199 (240)
56 2ixe_A Antigen peptide transpo 99.3 1.6E-12 5.3E-17 113.5 4.3 139 115-256 41-217 (271)
57 2d2e_A SUFC protein; ABC-ATPas 99.3 2.3E-12 8E-17 111.0 5.1 138 115-257 25-204 (250)
58 2ff7_A Alpha-hemolysin translo 99.3 8.7E-13 3E-17 113.5 2.0 72 115-188 31-105 (247)
59 2nq2_C Hypothetical ABC transp 99.3 2.1E-12 7E-17 111.6 3.8 63 115-188 27-89 (253)
60 2ihy_A ABC transporter, ATP-bi 99.2 1.3E-12 4.5E-17 114.4 2.2 139 115-257 43-224 (279)
61 2qi9_C Vitamin B12 import ATP- 99.2 1.9E-11 6.6E-16 105.2 7.9 72 115-188 22-96 (249)
62 2zu0_C Probable ATP-dependent 99.2 1.8E-11 6.3E-16 106.4 7.0 74 115-189 42-121 (267)
63 3nh6_A ATP-binding cassette SU 99.2 2.3E-12 8E-17 114.2 0.9 72 115-188 76-150 (306)
64 1mv5_A LMRA, multidrug resista 99.2 1.2E-12 3.9E-17 112.5 -1.9 72 115-187 24-97 (243)
65 3b5x_A Lipid A export ATP-bind 99.1 4.7E-11 1.6E-15 114.7 5.2 72 115-188 365-439 (582)
66 2ghi_A Transport protein; mult 99.1 6.6E-11 2.3E-15 102.5 4.8 71 115-188 42-115 (260)
67 2pze_A Cystic fibrosis transme 99.1 1.6E-11 5.6E-16 104.4 0.6 62 115-188 30-91 (229)
68 3gd7_A Fusion complex of cysti 99.1 6.9E-11 2.4E-15 108.0 4.4 70 115-187 43-115 (390)
69 2pjz_A Hypothetical protein ST 99.1 5.3E-11 1.8E-15 103.3 3.4 134 115-257 27-186 (263)
70 3bk7_A ABC transporter ATP-bin 99.0 3.8E-11 1.3E-15 115.6 1.9 127 116-256 379-532 (607)
71 1yqt_A RNAse L inhibitor; ATP- 99.0 4.8E-11 1.6E-15 113.5 2.4 127 116-256 309-462 (538)
72 3b60_A Lipid A export ATP-bind 99.0 7.4E-11 2.5E-15 113.3 3.4 138 115-257 365-540 (582)
73 2cbz_A Multidrug resistance-as 99.0 3.2E-10 1.1E-14 96.8 6.0 61 115-187 27-87 (237)
74 3ozx_A RNAse L inhibitor; ATP 99.0 1.9E-10 6.4E-15 109.4 4.8 37 115-151 290-326 (538)
75 2yl4_A ATP-binding cassette SU 99.0 8.2E-11 2.8E-15 113.3 1.4 72 115-188 366-440 (595)
76 2b8t_A Thymidine kinase; deoxy 99.0 2.5E-09 8.7E-14 90.4 10.4 115 117-256 10-126 (223)
77 2bbs_A Cystic fibrosis transme 99.0 9.6E-11 3.3E-15 103.1 0.6 61 115-187 60-120 (290)
78 1rj9_A FTSY, signal recognitio 98.9 1.8E-09 6.2E-14 95.5 8.2 134 118-256 101-258 (304)
79 3qf4_B Uncharacterized ABC tra 98.9 1.6E-09 5.5E-14 104.3 7.4 72 115-188 377-451 (598)
80 4a82_A Cystic fibrosis transme 98.9 1.5E-09 5.3E-14 104.0 6.8 71 115-187 363-436 (578)
81 3qf4_A ABC transporter, ATP-bi 98.9 1.3E-09 4.5E-14 104.7 6.3 70 115-186 365-437 (587)
82 3b9q_A Chloroplast SRP recepto 98.9 8.1E-10 2.8E-14 97.7 4.5 42 115-156 96-137 (302)
83 2yhs_A FTSY, cell division pro 98.9 1.5E-08 5.2E-13 94.7 12.2 89 116-208 290-386 (503)
84 3e70_C DPA, signal recognition 98.9 1.7E-08 5.9E-13 90.1 12.0 132 117-257 127-280 (328)
85 2og2_A Putative signal recogni 98.9 1.7E-09 5.9E-14 97.7 5.4 41 116-156 154-194 (359)
86 4gp7_A Metallophosphoesterase; 98.8 5.3E-10 1.8E-14 90.5 1.0 24 115-138 5-28 (171)
87 2kjq_A DNAA-related protein; s 98.8 2.3E-08 7.8E-13 79.2 9.4 92 115-256 33-125 (149)
88 3ec2_A DNA replication protein 98.8 3.7E-08 1.3E-12 79.8 9.7 112 115-259 34-146 (180)
89 3g5u_A MCG1178, multidrug resi 98.7 2.4E-08 8.3E-13 103.7 9.3 72 115-188 412-486 (1284)
90 4f4c_A Multidrug resistance pr 98.7 8.3E-09 2.9E-13 107.5 5.2 62 115-177 1101-1165(1321)
91 3j16_B RLI1P; ribosome recycli 98.7 1.3E-07 4.4E-12 91.0 13.1 36 114-149 373-408 (608)
92 2eyu_A Twitching motility prot 98.7 9.1E-08 3.1E-12 82.7 9.6 40 116-155 22-62 (261)
93 4f4c_A Multidrug resistance pr 98.6 2.1E-08 7.1E-13 104.5 6.2 62 115-177 440-504 (1321)
94 2npi_A Protein CLP1; CLP1-PCF1 98.6 4E-09 1.4E-13 98.4 0.1 54 115-174 134-188 (460)
95 1yqt_A RNAse L inhibitor; ATP- 98.6 2.7E-07 9.2E-12 87.7 12.5 34 116-149 44-77 (538)
96 2dpy_A FLII, flagellum-specifi 98.6 9.9E-09 3.4E-13 95.2 2.5 53 99-154 140-192 (438)
97 3g5u_A MCG1178, multidrug resi 98.6 2.2E-08 7.6E-13 104.0 5.0 70 115-186 1055-1127(1284)
98 3ozx_A RNAse L inhibitor; ATP 98.6 6.7E-08 2.3E-12 91.8 7.6 36 115-150 21-56 (538)
99 3j16_B RLI1P; ribosome recycli 98.6 5E-08 1.7E-12 93.9 6.6 35 116-150 100-134 (608)
100 3jvv_A Twitching mobility prot 98.6 8.6E-08 2.9E-12 86.5 7.6 112 117-258 121-233 (356)
101 3bk7_A ABC transporter ATP-bin 98.5 5.2E-07 1.8E-11 86.8 11.9 34 116-149 114-147 (607)
102 3ux8_A Excinuclease ABC, A sub 98.5 3.3E-08 1.1E-12 96.4 2.6 22 115-136 40-61 (670)
103 2orw_A Thymidine kinase; TMTK, 98.5 1.6E-07 5.3E-12 76.9 6.1 110 118-257 2-114 (184)
104 2ewv_A Twitching motility prot 98.4 5.1E-07 1.7E-11 81.9 7.9 86 116-207 133-219 (372)
105 1sq5_A Pantothenate kinase; P- 98.4 4.6E-07 1.6E-11 80.0 7.3 75 117-192 78-155 (308)
106 2pt7_A CAG-ALFA; ATPase, prote 98.4 1.8E-07 6.3E-12 83.5 4.4 39 116-154 168-206 (330)
107 1htw_A HI0065; nucleotide-bind 98.4 1.3E-07 4.5E-12 75.6 2.8 67 115-186 29-95 (158)
108 1vma_A Cell division protein F 98.4 7.7E-06 2.6E-10 72.2 14.4 89 116-207 101-196 (306)
109 2i3b_A HCR-ntpase, human cance 98.4 5.7E-08 1.9E-12 80.0 0.3 29 119-148 1-29 (189)
110 2iw3_A Elongation factor 3A; a 98.4 8.5E-07 2.9E-11 89.1 8.7 27 115-141 457-483 (986)
111 2qm8_A GTPase/ATPase; G protei 98.3 4.9E-07 1.7E-11 80.9 6.1 70 106-177 44-119 (337)
112 4b4t_J 26S protease regulatory 98.3 2.8E-06 9.7E-11 77.5 11.2 118 115-254 178-295 (405)
113 1ye8_A Protein THEP1, hypothet 98.3 1.7E-06 5.8E-11 70.3 8.5 24 121-144 2-25 (178)
114 1j8m_F SRP54, signal recogniti 98.3 2.7E-06 9.2E-11 74.8 10.4 103 102-207 75-190 (297)
115 2qby_A CDC6 homolog 1, cell di 98.3 4.4E-06 1.5E-10 74.7 11.2 93 118-210 44-141 (386)
116 3h4m_A Proteasome-activating n 98.3 8.2E-06 2.8E-10 70.5 12.4 120 115-256 47-166 (285)
117 4b4t_K 26S protease regulatory 98.3 5.3E-06 1.8E-10 76.4 11.6 118 115-254 202-319 (428)
118 4b4t_I 26S protease regulatory 98.3 5.7E-06 1.9E-10 76.0 11.5 117 115-253 212-328 (437)
119 1fnn_A CDC6P, cell division co 98.3 1E-05 3.4E-10 72.6 13.1 88 118-209 41-137 (389)
120 3b85_A Phosphate starvation-in 98.3 1.5E-07 5.2E-12 78.6 0.6 58 115-174 18-75 (208)
121 4b4t_M 26S protease regulatory 98.2 3.5E-06 1.2E-10 77.8 9.7 118 114-253 210-327 (434)
122 2obl_A ESCN; ATPase, hydrolase 98.2 6.6E-07 2.3E-11 80.4 4.5 53 99-154 54-106 (347)
123 1xx6_A Thymidine kinase; NESG, 98.2 3.9E-06 1.3E-10 69.1 8.7 110 117-256 6-118 (191)
124 4b4t_L 26S protease subunit RP 98.2 6.8E-06 2.3E-10 75.9 11.2 118 114-253 210-327 (437)
125 2j9r_A Thymidine kinase; TK1, 98.2 4.6E-06 1.6E-10 69.7 8.3 110 117-256 26-138 (214)
126 1zu4_A FTSY; GTPase, signal re 98.2 6E-06 2E-10 73.3 8.9 42 116-157 102-143 (320)
127 1zp6_A Hypothetical protein AT 98.2 1E-06 3.6E-11 71.5 3.7 38 115-155 5-42 (191)
128 3thx_A DNA mismatch repair pro 98.2 2.8E-06 9.6E-11 85.3 7.4 29 115-143 658-686 (934)
129 2r5u_A Replicative DNA helicas 98.2 7.8E-08 2.7E-12 79.9 -3.2 74 2-81 123-197 (200)
130 4b4t_H 26S protease regulatory 98.1 1.3E-05 4.3E-10 74.3 11.0 117 115-253 239-355 (467)
131 1z6g_A Guanylate kinase; struc 98.1 1.2E-06 4E-11 73.5 3.7 35 115-152 19-53 (218)
132 2gza_A Type IV secretion syste 98.1 1.5E-06 5.2E-11 78.4 4.6 88 115-206 171-261 (361)
133 3thx_B DNA mismatch repair pro 98.1 2.2E-05 7.4E-10 78.8 13.3 30 115-144 669-698 (918)
134 2o8b_B DNA mismatch repair pro 98.1 1.3E-05 4.5E-10 81.3 11.8 25 119-144 789-813 (1022)
135 2v9p_A Replication protein E1; 98.1 2.9E-06 9.9E-11 74.8 6.2 44 105-153 114-157 (305)
136 1xwi_A SKD1 protein; VPS4B, AA 98.1 2.3E-05 7.8E-10 69.5 11.9 79 115-211 41-119 (322)
137 1znw_A Guanylate kinase, GMP k 98.1 1.7E-06 5.8E-11 71.6 4.0 30 115-144 16-45 (207)
138 3kl4_A SRP54, signal recogniti 98.1 4.8E-05 1.7E-09 70.1 14.0 88 118-207 96-189 (433)
139 1sxj_E Activator 1 40 kDa subu 98.1 9.4E-06 3.2E-10 72.2 9.0 30 122-151 39-69 (354)
140 2v1u_A Cell division control p 98.1 2E-05 6.9E-10 70.4 11.2 89 118-210 43-143 (387)
141 2px0_A Flagellar biosynthesis 98.1 1.5E-05 5E-10 70.0 9.9 41 117-157 103-144 (296)
142 1ewq_A DNA mismatch repair pro 98.1 6.4E-06 2.2E-10 81.2 8.0 31 119-149 576-607 (765)
143 3c8u_A Fructokinase; YP_612366 98.1 3.4E-06 1.2E-10 69.9 5.1 39 116-154 19-57 (208)
144 3e2i_A Thymidine kinase; Zn-bi 98.1 1E-05 3.4E-10 67.6 7.8 108 117-254 26-136 (219)
145 1c9k_A COBU, adenosylcobinamid 98.1 5E-07 1.7E-11 73.7 -0.2 36 121-160 1-36 (180)
146 3ux8_A Excinuclease ABC, A sub 98.0 2.1E-05 7.3E-10 76.5 11.0 26 115-140 344-369 (670)
147 1lv7_A FTSH; alpha/beta domain 98.0 5.9E-05 2E-09 64.1 12.5 72 121-211 47-118 (257)
148 3aez_A Pantothenate kinase; tr 98.0 4.6E-06 1.6E-10 73.8 5.6 41 116-156 87-129 (312)
149 1ls1_A Signal recognition part 98.0 1.7E-05 5.9E-10 69.5 9.1 87 118-206 97-189 (295)
150 1wb9_A DNA mismatch repair pro 98.0 2.5E-05 8.4E-10 77.4 10.7 28 117-144 605-632 (800)
151 3bos_A Putative DNA replicatio 98.0 1.8E-05 6.1E-10 65.9 8.3 39 118-156 51-89 (242)
152 4eun_A Thermoresistant glucoki 98.0 7.8E-06 2.7E-10 67.1 5.9 53 116-173 26-80 (200)
153 1rz3_A Hypothetical protein rb 98.0 7E-06 2.4E-10 67.6 5.5 40 116-155 19-58 (201)
154 3tr0_A Guanylate kinase, GMP k 98.0 4.3E-06 1.5E-10 68.5 4.2 28 116-143 4-31 (205)
155 2orv_A Thymidine kinase; TP4A 98.0 5.3E-05 1.8E-09 63.9 10.9 107 118-256 18-126 (234)
156 3szr_A Interferon-induced GTP- 98.0 9E-07 3.1E-11 85.3 -0.2 70 122-191 48-123 (608)
157 1w4r_A Thymidine kinase; type 98.0 1.8E-05 6.1E-10 65.1 7.6 109 117-257 18-128 (195)
158 4aby_A DNA repair protein RECN 98.0 2.8E-05 9.5E-10 70.9 9.7 39 103-144 47-85 (415)
159 2ffh_A Protein (FFH); SRP54, s 97.9 4.3E-05 1.5E-09 70.3 10.5 87 118-206 97-189 (425)
160 1s96_A Guanylate kinase, GMP k 97.9 2.8E-06 9.4E-11 71.4 2.3 39 115-153 12-52 (219)
161 1l8q_A Chromosomal replication 97.9 4.9E-05 1.7E-09 67.0 10.5 38 118-155 36-73 (324)
162 4fcw_A Chaperone protein CLPB; 97.9 5.6E-05 1.9E-09 65.8 10.5 86 118-210 46-132 (311)
163 3ice_A Transcription terminati 97.9 2.6E-05 9E-10 70.7 8.5 53 98-153 156-210 (422)
164 3uie_A Adenylyl-sulfate kinase 97.9 1.1E-05 3.8E-10 66.3 5.6 38 116-154 22-60 (200)
165 2ce7_A Cell division protein F 97.9 7.8E-05 2.7E-09 69.6 11.9 118 115-256 47-164 (476)
166 2x8a_A Nuclear valosin-contain 97.9 7.4E-05 2.5E-09 64.7 11.0 37 115-156 42-78 (274)
167 3dm5_A SRP54, signal recogniti 97.9 6.1E-05 2.1E-09 69.6 10.8 88 118-207 99-192 (443)
168 2qz4_A Paraplegin; AAA+, SPG7, 97.9 5.9E-05 2E-09 63.9 10.0 78 115-211 35-112 (262)
169 3eie_A Vacuolar protein sortin 97.9 6.1E-05 2.1E-09 66.5 10.3 78 115-211 47-124 (322)
170 3tqc_A Pantothenate kinase; bi 97.9 1.4E-05 4.8E-10 71.0 6.1 37 121-157 94-132 (321)
171 2jeo_A Uridine-cytidine kinase 97.9 7.4E-06 2.5E-10 69.6 4.1 36 106-143 14-49 (245)
172 3cf0_A Transitional endoplasmi 97.9 2.9E-05 9.8E-10 68.0 8.0 78 115-211 45-122 (301)
173 3asz_A Uridine kinase; cytidin 97.9 1E-05 3.6E-10 66.7 4.9 36 117-155 4-39 (211)
174 3sop_A Neuronal-specific septi 97.9 1.8E-06 6.3E-11 74.8 0.3 34 121-154 4-37 (270)
175 3b9p_A CG5977-PA, isoform A; A 97.9 0.00017 5.9E-09 62.4 12.7 75 118-211 53-127 (297)
176 1oft_A SULA, hypothetical prot 97.9 0.00027 9.2E-09 56.1 12.5 107 98-204 23-132 (161)
177 1kgd_A CASK, peripheral plasma 97.9 9.3E-06 3.2E-10 65.7 4.1 30 115-144 1-30 (180)
178 2pez_A Bifunctional 3'-phospho 97.9 1.6E-05 5.4E-10 64.0 5.4 38 117-154 3-40 (179)
179 1p9r_A General secretion pathw 97.9 1.1E-05 3.9E-10 74.1 5.1 39 117-155 165-203 (418)
180 1sxj_A Activator 1 95 kDa subu 97.8 0.00011 3.9E-09 69.2 11.6 114 117-257 75-190 (516)
181 1jbk_A CLPB protein; beta barr 97.8 0.00023 8E-09 56.5 11.9 81 118-211 42-129 (195)
182 2yvu_A Probable adenylyl-sulfa 97.8 2E-05 6.9E-10 63.7 5.5 39 116-154 10-48 (186)
183 2qp9_X Vacuolar protein sortin 97.8 9E-05 3.1E-09 66.5 10.1 78 115-211 80-157 (355)
184 1lvg_A Guanylate kinase, GMP k 97.8 1.1E-05 3.7E-10 66.4 3.5 28 117-144 2-29 (198)
185 2j41_A Guanylate kinase; GMP, 97.8 1.3E-05 4.6E-10 65.5 4.0 30 116-145 3-32 (207)
186 3t15_A Ribulose bisphosphate c 97.8 3E-05 1E-09 67.7 6.4 82 115-211 32-113 (293)
187 2r8r_A Sensor protein; KDPD, P 97.8 0.0005 1.7E-08 57.8 13.6 43 118-160 4-47 (228)
188 2bdt_A BH3686; alpha-beta prot 97.8 1.8E-05 6.2E-10 64.1 4.5 31 119-152 2-32 (189)
189 2z4s_A Chromosomal replication 97.8 0.0001 3.5E-09 68.2 9.9 106 119-256 130-237 (440)
190 1sky_E F1-ATPase, F1-ATP synth 97.8 4.6E-05 1.6E-09 70.8 7.4 50 97-149 132-181 (473)
191 3a00_A Guanylate kinase, GMP k 97.8 1.1E-05 3.9E-10 65.4 2.9 27 119-145 1-27 (186)
192 2r6f_A Excinuclease ABC subuni 97.8 7.8E-05 2.7E-09 74.7 9.4 26 115-140 646-671 (972)
193 3lnc_A Guanylate kinase, GMP k 97.7 8.7E-06 3E-10 68.4 1.9 29 115-143 23-52 (231)
194 3euj_A Chromosome partition pr 97.7 1.2E-05 4.1E-10 75.1 2.9 39 115-154 26-64 (483)
195 2p65_A Hypothetical protein PF 97.7 6.2E-05 2.1E-09 59.9 6.6 28 118-145 42-69 (187)
196 3cf2_A TER ATPase, transitiona 97.7 9.2E-05 3.2E-09 73.2 8.3 116 114-254 233-348 (806)
197 3tau_A Guanylate kinase, GMP k 97.6 3.1E-05 1E-09 64.1 4.0 28 117-144 6-33 (208)
198 1njg_A DNA polymerase III subu 97.6 6.8E-05 2.3E-09 61.9 6.0 27 120-146 46-72 (250)
199 1sxj_C Activator 1 40 kDa subu 97.6 0.00028 9.5E-09 62.6 10.2 30 118-147 43-74 (340)
200 2vp4_A Deoxynucleoside kinase; 97.6 2.4E-05 8.2E-10 65.8 3.0 36 115-154 16-51 (230)
201 1knq_A Gluconate kinase; ALFA/ 97.6 4E-05 1.4E-09 61.2 4.1 36 117-157 6-41 (175)
202 2chg_A Replication factor C sm 97.6 0.00046 1.6E-08 56.1 10.6 24 122-145 41-64 (226)
203 3pih_A Uvrabc system protein A 97.6 0.00038 1.3E-08 69.8 11.8 23 115-137 606-628 (916)
204 1ypw_A Transitional endoplasmi 97.6 0.00015 5E-09 72.1 8.7 29 115-143 234-262 (806)
205 2iw3_A Elongation factor 3A; a 97.6 8.6E-06 2.9E-10 81.9 -0.2 38 115-152 695-732 (986)
206 3syl_A Protein CBBX; photosynt 97.6 0.00032 1.1E-08 61.0 9.9 38 117-154 65-106 (309)
207 1tq4_A IIGP1, interferon-induc 97.6 1.4E-05 4.8E-10 73.4 1.0 30 121-150 71-100 (413)
208 1t9h_A YLOQ, probable GTPase E 97.6 5.3E-06 1.8E-10 73.2 -1.9 37 116-152 170-206 (307)
209 3d8b_A Fidgetin-like protein 1 97.6 0.00049 1.7E-08 61.7 10.9 76 117-211 115-190 (357)
210 3vaa_A Shikimate kinase, SK; s 97.6 5.2E-05 1.8E-09 62.1 4.2 29 115-143 21-49 (199)
211 2qby_B CDC6 homolog 3, cell di 97.5 8.6E-05 2.9E-09 66.5 5.8 88 118-210 44-146 (384)
212 2zan_A Vacuolar protein sortin 97.5 0.00034 1.2E-08 64.7 9.8 79 115-211 163-241 (444)
213 2rcn_A Probable GTPase ENGC; Y 97.5 3.5E-05 1.2E-09 69.3 3.0 46 102-153 204-250 (358)
214 2www_A Methylmalonic aciduria 97.5 9.8E-05 3.4E-09 66.2 5.8 40 117-156 72-111 (349)
215 2ygr_A Uvrabc system protein A 97.5 0.00064 2.2E-08 68.3 12.1 26 115-140 664-689 (993)
216 3cr8_A Sulfate adenylyltranfer 97.5 5.6E-05 1.9E-09 71.8 4.3 41 115-155 365-406 (552)
217 1m7g_A Adenylylsulfate kinase; 97.5 0.0001 3.5E-09 60.9 5.4 40 115-154 21-61 (211)
218 1svm_A Large T antigen; AAA+ f 97.5 9E-05 3.1E-09 67.2 5.3 42 106-152 158-199 (377)
219 2rhm_A Putative kinase; P-loop 97.5 7.4E-05 2.5E-09 60.3 4.2 29 115-143 1-29 (193)
220 3uk6_A RUVB-like 2; hexameric 97.5 0.0006 2.1E-08 60.7 10.6 31 115-145 66-96 (368)
221 2xxa_A Signal recognition part 97.5 0.00059 2E-08 62.9 10.7 87 118-206 99-192 (433)
222 3n70_A Transport activator; si 97.5 0.00013 4.4E-09 56.7 5.4 37 118-155 23-59 (145)
223 2vf7_A UVRA2, excinuclease ABC 97.5 0.00053 1.8E-08 68.1 10.9 30 115-144 519-549 (842)
224 2p67_A LAO/AO transport system 97.5 0.00013 4.5E-09 65.1 6.1 42 115-156 52-93 (341)
225 2j37_W Signal recognition part 97.5 0.00086 2.9E-08 63.0 11.8 40 118-157 100-139 (504)
226 2oap_1 GSPE-2, type II secreti 97.5 5.2E-05 1.8E-09 71.4 3.5 39 116-154 257-295 (511)
227 3hu3_A Transitional endoplasmi 97.5 0.00045 1.5E-08 64.7 9.7 77 115-211 234-311 (489)
228 1kag_A SKI, shikimate kinase I 97.5 6.8E-05 2.3E-09 59.5 3.6 27 118-144 3-29 (173)
229 3vfd_A Spastin; ATPase, microt 97.5 0.0012 4E-08 59.8 12.1 76 117-211 146-221 (389)
230 1tue_A Replication protein E1; 97.4 9.1E-05 3.1E-09 61.4 4.2 38 104-143 45-82 (212)
231 2yv5_A YJEQ protein; hydrolase 97.4 5.4E-05 1.8E-09 66.5 3.0 36 116-152 162-197 (302)
232 2f1r_A Molybdopterin-guanine d 97.4 8.4E-05 2.9E-09 59.9 3.7 27 120-146 3-29 (171)
233 2w58_A DNAI, primosome compone 97.4 0.00017 5.8E-09 58.8 5.6 36 120-155 55-90 (202)
234 3kta_A Chromosome segregation 97.4 9.3E-05 3.2E-09 59.4 3.8 30 115-145 23-52 (182)
235 2qt1_A Nicotinamide riboside k 97.4 7.8E-05 2.7E-09 61.3 3.3 29 115-143 17-45 (207)
236 2qag_B Septin-6, protein NEDD5 97.4 6.4E-05 2.2E-09 69.1 2.9 34 107-142 30-65 (427)
237 2dhr_A FTSH; AAA+ protein, hex 97.4 0.00036 1.2E-08 65.5 7.9 36 115-155 62-97 (499)
238 2bbw_A Adenylate kinase 4, AK4 97.4 0.0001 3.5E-09 62.4 3.7 25 118-142 26-50 (246)
239 4eaq_A DTMP kinase, thymidylat 97.3 0.00022 7.5E-09 60.0 5.4 38 115-153 22-59 (229)
240 1ixz_A ATP-dependent metallopr 97.3 0.00023 7.9E-09 60.3 5.6 28 115-144 47-74 (254)
241 2qen_A Walker-type ATPase; unk 97.3 0.00051 1.8E-08 60.3 8.1 32 119-155 31-62 (350)
242 1lw7_A Transcriptional regulat 97.3 7.1E-05 2.4E-09 67.4 2.5 34 114-147 163-198 (365)
243 1u0l_A Probable GTPase ENGC; p 97.3 4.9E-05 1.7E-09 66.7 1.4 36 117-152 167-202 (301)
244 3ney_A 55 kDa erythrocyte memb 97.3 0.00014 4.8E-09 59.9 3.9 28 117-144 17-44 (197)
245 1g5t_A COB(I)alamin adenosyltr 97.3 0.0019 6.3E-08 53.1 10.6 124 120-259 29-166 (196)
246 1w5s_A Origin recognition comp 97.3 0.00083 2.8E-08 60.5 9.3 89 118-210 49-151 (412)
247 3u61_B DNA polymerase accessor 97.3 0.002 6.8E-08 56.4 11.5 67 119-210 48-118 (324)
248 2qor_A Guanylate kinase; phosp 97.3 0.00015 5E-09 59.6 3.8 28 116-143 9-36 (204)
249 4e22_A Cytidylate kinase; P-lo 97.3 0.00015 5.2E-09 61.8 3.8 26 117-142 25-50 (252)
250 1np6_A Molybdopterin-guanine d 97.3 0.00035 1.2E-08 56.3 5.7 39 115-153 2-40 (174)
251 1kht_A Adenylate kinase; phosp 97.3 0.00026 8.9E-09 56.8 4.8 37 118-154 2-38 (192)
252 1iy2_A ATP-dependent metallopr 97.3 0.00032 1.1E-08 60.4 5.7 28 115-144 71-98 (278)
253 2v3c_C SRP54, signal recogniti 97.2 0.00024 8.2E-09 65.5 5.0 37 120-156 100-136 (432)
254 3cm0_A Adenylate kinase; ATP-b 97.2 0.00018 6.1E-09 57.8 3.6 26 118-143 3-28 (186)
255 1nks_A Adenylate kinase; therm 97.2 0.00032 1.1E-08 56.3 5.1 34 121-154 3-36 (194)
256 2plr_A DTMP kinase, probable t 97.2 0.00033 1.1E-08 57.1 5.2 35 118-153 3-37 (213)
257 2ck3_D ATP synthase subunit be 97.2 0.00031 1.1E-08 65.2 5.4 54 97-153 134-188 (482)
258 1ypw_A Transitional endoplasmi 97.2 6.3E-05 2.2E-09 74.7 0.9 31 114-144 506-536 (806)
259 3a4m_A L-seryl-tRNA(SEC) kinas 97.2 0.00037 1.3E-08 59.6 5.6 38 118-155 3-40 (260)
260 1d2n_A N-ethylmaleimide-sensit 97.2 0.0018 6E-08 55.4 9.9 36 116-154 61-96 (272)
261 3cf2_A TER ATPase, transitiona 97.2 0.00025 8.5E-09 70.1 4.9 78 114-211 506-584 (806)
262 1qhl_A Protein (cell division 97.2 2.2E-05 7.6E-10 66.3 -2.3 34 120-153 28-61 (227)
263 1sxj_D Activator 1 41 kDa subu 97.2 0.0063 2.1E-07 53.5 13.5 43 99-144 41-83 (353)
264 1qhx_A CPT, protein (chloramph 97.2 0.00029 9.9E-09 56.1 4.0 26 118-143 2-27 (178)
265 1sxj_B Activator 1 37 kDa subu 97.2 0.0032 1.1E-07 54.5 11.1 23 122-144 45-67 (323)
266 1cke_A CK, MSSA, protein (cyti 97.2 0.00032 1.1E-08 58.2 4.3 26 118-143 4-29 (227)
267 3te6_A Regulatory protein SIR3 97.1 0.0012 4E-08 58.4 8.1 88 118-210 44-145 (318)
268 1pui_A ENGB, probable GTP-bind 97.1 5.7E-05 1.9E-09 61.8 -0.4 29 115-143 22-50 (210)
269 2ius_A DNA translocase FTSK; n 97.1 0.0042 1.4E-07 58.3 12.2 41 116-156 164-208 (512)
270 3kb2_A SPBC2 prophage-derived 97.1 0.00031 1E-08 55.4 3.9 23 121-143 3-25 (173)
271 1nn5_A Similar to deoxythymidy 97.1 0.0006 2E-08 55.8 5.8 37 117-153 7-43 (215)
272 1fx0_B ATP synthase beta chain 97.1 0.00036 1.2E-08 65.0 4.8 55 97-154 146-201 (498)
273 1xjc_A MOBB protein homolog; s 97.1 0.00058 2E-08 54.8 5.3 35 120-154 5-39 (169)
274 3t61_A Gluconokinase; PSI-biol 97.1 0.00033 1.1E-08 57.2 4.0 25 119-143 18-42 (202)
275 1odf_A YGR205W, hypothetical 3 97.1 0.00035 1.2E-08 61.0 4.3 30 117-146 29-58 (290)
276 2a5y_B CED-4; apoptosis; HET: 97.1 0.0034 1.2E-07 59.4 11.4 92 118-209 151-255 (549)
277 3e1s_A Exodeoxyribonuclease V, 97.1 0.00013 4.6E-09 69.6 1.6 38 118-155 203-240 (574)
278 4dzz_A Plasmid partitioning pr 97.1 0.0023 7.9E-08 51.9 8.9 81 121-206 3-84 (206)
279 2wwf_A Thymidilate kinase, put 97.1 0.00068 2.3E-08 55.4 5.7 36 115-150 6-41 (212)
280 1in4_A RUVB, holliday junction 97.1 0.00033 1.1E-08 62.2 3.9 24 120-143 52-75 (334)
281 1y63_A LMAJ004144AAA protein; 97.1 0.00043 1.5E-08 55.8 4.3 27 116-142 7-33 (184)
282 3nwj_A ATSK2; P loop, shikimat 97.1 0.00031 1.1E-08 60.0 3.5 37 106-144 34-73 (250)
283 1ojl_A Transcriptional regulat 97.1 0.0011 3.7E-08 58.1 7.0 42 118-159 24-65 (304)
284 2qgz_A Helicase loader, putati 97.0 0.00068 2.3E-08 59.6 5.7 37 119-155 152-189 (308)
285 3pvs_A Replication-associated 97.0 0.0023 7.8E-08 59.2 9.5 66 120-210 51-119 (447)
286 1ly1_A Polynucleotide kinase; 97.0 0.00035 1.2E-08 55.5 3.5 22 120-141 3-24 (181)
287 3l0o_A Transcription terminati 97.0 0.00048 1.6E-08 62.4 4.7 54 98-154 157-212 (427)
288 3co5_A Putative two-component 97.0 0.00047 1.6E-08 53.3 3.9 25 119-143 27-51 (143)
289 2dy1_A Elongation factor G; tr 97.0 0.0014 4.6E-08 63.7 7.9 30 116-145 6-35 (665)
290 3umf_A Adenylate kinase; rossm 97.0 0.00037 1.3E-08 58.3 3.3 29 115-143 25-53 (217)
291 3trf_A Shikimate kinase, SK; a 97.0 0.00051 1.7E-08 55.1 4.0 26 118-143 4-29 (185)
292 2c95_A Adenylate kinase 1; tra 97.0 0.00054 1.8E-08 55.3 4.2 26 118-143 8-33 (196)
293 3oaa_A ATP synthase subunit al 97.0 0.0027 9.1E-08 59.2 9.3 55 97-154 143-197 (513)
294 3lw7_A Adenylate kinase relate 97.0 0.00038 1.3E-08 54.7 3.1 20 120-139 2-21 (179)
295 1yrb_A ATP(GTP)binding protein 97.0 0.00089 3.1E-08 56.6 5.7 40 117-157 12-51 (262)
296 3pfi_A Holliday junction ATP-d 97.0 0.006 2E-07 53.6 11.3 64 120-210 56-119 (338)
297 1jr3_A DNA polymerase III subu 97.0 0.00082 2.8E-08 59.8 5.6 26 120-145 39-64 (373)
298 2qe7_A ATP synthase subunit al 97.0 0.0014 4.9E-08 61.0 7.2 55 97-154 143-197 (502)
299 1tev_A UMP-CMP kinase; ploop, 97.0 0.00052 1.8E-08 55.1 3.8 26 118-143 2-27 (196)
300 1gtv_A TMK, thymidylate kinase 97.0 0.00028 9.6E-09 57.9 2.2 33 121-153 2-34 (214)
301 3iij_A Coilin-interacting nucl 97.0 0.00058 2E-08 54.6 4.0 28 116-143 8-35 (180)
302 1qvr_A CLPB protein; coiled co 96.9 0.0024 8.3E-08 63.7 9.3 39 120-158 589-627 (854)
303 2if2_A Dephospho-COA kinase; a 96.9 0.00046 1.6E-08 56.3 3.4 21 121-141 3-23 (204)
304 1jjv_A Dephospho-COA kinase; P 96.9 0.00045 1.5E-08 56.5 3.3 21 121-141 4-24 (206)
305 2ze6_A Isopentenyl transferase 96.9 0.00054 1.8E-08 58.4 3.8 23 121-143 3-25 (253)
306 4ag6_A VIRB4 ATPase, type IV s 96.9 0.0011 3.9E-08 59.9 6.1 42 118-159 34-75 (392)
307 3llm_A ATP-dependent RNA helic 96.9 0.0056 1.9E-07 51.2 10.0 29 116-144 73-101 (235)
308 2z0h_A DTMP kinase, thymidylat 96.9 0.0011 3.8E-08 53.4 5.4 33 121-153 2-34 (197)
309 1a5t_A Delta prime, HOLB; zinc 96.9 0.0029 9.9E-08 56.0 8.5 88 119-210 24-121 (334)
310 3p32_A Probable GTPase RV1496/ 96.9 0.0012 4.3E-08 59.0 6.1 39 118-156 78-116 (355)
311 2pbr_A DTMP kinase, thymidylat 96.9 0.0011 3.9E-08 53.1 5.3 33 121-153 2-34 (195)
312 1aky_A Adenylate kinase; ATP:A 96.9 0.00074 2.5E-08 55.9 4.2 26 118-143 3-28 (220)
313 2v54_A DTMP kinase, thymidylat 96.9 0.00078 2.7E-08 54.7 4.1 26 118-143 3-28 (204)
314 2axn_A 6-phosphofructo-2-kinas 96.9 0.0089 3E-07 56.3 11.9 37 118-154 34-70 (520)
315 1gvn_B Zeta; postsegregational 96.9 0.00055 1.9E-08 59.5 3.3 36 117-155 31-66 (287)
316 3m6a_A ATP-dependent protease 96.8 0.00058 2E-08 64.8 3.6 27 118-144 107-133 (543)
317 2cdn_A Adenylate kinase; phosp 96.8 0.00088 3E-08 54.5 4.3 27 117-143 18-44 (201)
318 2p5t_B PEZT; postsegregational 96.8 0.00047 1.6E-08 58.7 2.5 38 116-156 29-66 (253)
319 1qvr_A CLPB protein; coiled co 96.8 0.004 1.4E-07 62.1 9.6 78 120-211 192-277 (854)
320 2vli_A Antibiotic resistance p 96.8 0.00054 1.8E-08 54.7 2.7 26 118-143 4-29 (183)
321 1z6t_A APAF-1, apoptotic prote 96.8 0.0017 5.8E-08 61.7 6.6 102 104-207 133-246 (591)
322 1w1w_A Structural maintenance 96.8 0.00068 2.3E-08 62.2 3.7 30 116-145 23-52 (430)
323 1q3t_A Cytidylate kinase; nucl 96.8 0.00096 3.3E-08 55.9 4.3 29 115-143 12-40 (236)
324 1via_A Shikimate kinase; struc 96.8 0.00072 2.5E-08 53.8 3.4 23 121-143 6-28 (175)
325 3pxi_A Negative regulator of g 96.8 0.0026 9E-08 62.5 8.1 35 121-155 523-557 (758)
326 2jaq_A Deoxyguanosine kinase; 96.8 0.00084 2.9E-08 54.3 3.8 24 121-144 2-25 (205)
327 2bwj_A Adenylate kinase 5; pho 96.8 0.0009 3.1E-08 54.0 3.9 26 118-143 11-36 (199)
328 1nij_A Hypothetical protein YJ 96.8 0.0003 1E-08 62.1 1.0 25 119-143 4-28 (318)
329 1zd8_A GTP:AMP phosphotransfer 96.8 0.00085 2.9E-08 55.8 3.8 29 115-143 3-31 (227)
330 1hqc_A RUVB; extended AAA-ATPa 96.8 0.0063 2.2E-07 52.9 9.5 66 119-210 38-103 (324)
331 3k1j_A LON protease, ATP-depen 96.8 0.001 3.5E-08 63.8 4.6 44 105-153 51-94 (604)
332 3qf7_A RAD50; ABC-ATPase, ATPa 96.8 0.00088 3E-08 60.3 3.9 28 115-143 20-47 (365)
333 1f2t_A RAD50 ABC-ATPase; DNA d 96.7 0.0011 3.6E-08 51.9 3.9 24 120-143 24-47 (149)
334 2o5v_A DNA replication and rep 96.7 0.00097 3.3E-08 60.0 3.9 27 115-142 23-49 (359)
335 2iyv_A Shikimate kinase, SK; t 96.7 0.00096 3.3E-08 53.4 3.5 24 120-143 3-26 (184)
336 3sr0_A Adenylate kinase; phosp 96.7 0.0011 3.9E-08 54.8 3.8 23 121-143 2-24 (206)
337 1zak_A Adenylate kinase; ATP:A 96.7 0.0011 3.9E-08 54.8 3.8 26 118-143 4-29 (222)
338 2gno_A DNA polymerase III, gam 96.7 0.021 7.1E-07 50.0 12.0 72 119-210 18-95 (305)
339 4edh_A DTMP kinase, thymidylat 96.7 0.0022 7.4E-08 53.3 5.4 37 117-153 4-40 (213)
340 3end_A Light-independent proto 96.6 0.002 6.7E-08 56.2 5.3 40 117-156 39-78 (307)
341 1ni3_A YCHF GTPase, YCHF GTP-b 96.6 0.0012 4.2E-08 60.0 4.1 28 114-141 15-42 (392)
342 1zuh_A Shikimate kinase; alpha 96.6 0.0015 5E-08 51.6 3.9 24 120-143 8-31 (168)
343 1qf9_A UMP/CMP kinase, protein 96.6 0.0014 4.6E-08 52.5 3.7 25 119-143 6-30 (194)
344 1r6b_X CLPA protein; AAA+, N-t 96.6 0.011 3.7E-07 58.0 10.8 33 120-155 489-521 (758)
345 3r20_A Cytidylate kinase; stru 96.6 0.0014 4.8E-08 55.3 3.8 25 119-143 9-33 (233)
346 3fb4_A Adenylate kinase; psych 96.6 0.0015 5E-08 53.7 3.8 23 121-143 2-24 (216)
347 3be4_A Adenylate kinase; malar 96.6 0.0014 4.7E-08 54.3 3.6 26 118-143 4-29 (217)
348 4a8j_A Elongator complex prote 96.6 0.0006 2E-08 61.0 1.5 38 97-137 18-55 (361)
349 2ck3_A ATP synthase subunit al 96.6 0.0027 9.3E-08 59.3 5.9 45 97-144 143-188 (510)
350 1uj2_A Uridine-cytidine kinase 96.6 0.0016 5.5E-08 55.2 4.0 38 119-156 22-64 (252)
351 3vr4_D V-type sodium ATPase su 96.6 0.0014 4.8E-08 60.5 3.9 46 97-145 132-177 (465)
352 1oix_A RAS-related protein RAB 96.6 0.0013 4.5E-08 53.0 3.4 24 121-144 31-54 (191)
353 1a7j_A Phosphoribulokinase; tr 96.5 0.0011 3.8E-08 57.7 3.1 40 118-157 4-43 (290)
354 3tlx_A Adenylate kinase 2; str 96.5 0.0017 5.7E-08 54.9 4.0 26 118-143 28-53 (243)
355 1e6c_A Shikimate kinase; phosp 96.5 0.0014 4.8E-08 51.7 3.4 24 120-143 3-26 (173)
356 2f9l_A RAB11B, member RAS onco 96.5 0.0013 4.5E-08 53.2 3.2 23 121-143 7-29 (199)
357 1ukz_A Uridylate kinase; trans 96.5 0.0017 5.9E-08 52.7 3.9 25 118-142 14-38 (203)
358 1uf9_A TT1252 protein; P-loop, 96.5 0.0016 5.4E-08 52.7 3.7 25 118-142 7-31 (203)
359 3v9p_A DTMP kinase, thymidylat 96.5 0.0022 7.7E-08 53.8 4.6 39 115-153 21-63 (227)
360 1vht_A Dephospho-COA kinase; s 96.5 0.0017 5.8E-08 53.5 3.8 24 118-141 3-26 (218)
361 3vr4_A V-type sodium ATPase ca 96.5 0.0044 1.5E-07 58.6 6.8 52 97-153 213-264 (600)
362 2gj8_A MNME, tRNA modification 96.5 0.0013 4.5E-08 52.1 2.9 25 118-142 3-27 (172)
363 4b3f_X DNA-binding protein smu 96.5 0.0037 1.3E-07 60.4 6.5 38 118-155 204-241 (646)
364 2c61_A A-type ATP synthase non 96.5 0.0017 5.9E-08 60.1 3.9 46 97-145 133-178 (469)
365 2c9o_A RUVB-like 1; hexameric 96.5 0.0029 9.8E-08 58.5 5.4 30 115-144 59-88 (456)
366 3lv8_A DTMP kinase, thymidylat 96.5 0.0037 1.3E-07 52.8 5.6 39 115-153 23-62 (236)
367 2r62_A Cell division protease 96.4 0.001 3.4E-08 56.7 2.1 25 120-144 45-69 (268)
368 2r9v_A ATP synthase subunit al 96.4 0.0019 6.5E-08 60.3 4.0 54 97-154 156-210 (515)
369 2wsm_A Hydrogenase expression/ 96.4 0.0032 1.1E-07 51.7 5.0 37 120-157 31-67 (221)
370 3dl0_A Adenylate kinase; phosp 96.4 0.0019 6.6E-08 53.0 3.6 22 121-142 2-23 (216)
371 2pt5_A Shikimate kinase, SK; a 96.4 0.0022 7.6E-08 50.3 3.8 23 121-143 2-24 (168)
372 1e69_A Chromosome segregation 96.4 0.0013 4.4E-08 58.0 2.6 26 116-142 22-47 (322)
373 2bjv_A PSP operon transcriptio 96.4 0.0021 7.3E-08 54.6 3.9 39 119-157 29-67 (265)
374 2ga8_A Hypothetical 39.9 kDa p 96.4 0.0026 8.9E-08 57.0 4.5 29 116-144 19-49 (359)
375 1ofh_A ATP-dependent HSL prote 96.4 0.0033 1.1E-07 54.2 5.1 35 118-155 49-83 (310)
376 1ak2_A Adenylate kinase isoenz 96.4 0.0027 9.1E-08 53.1 4.3 26 118-143 15-40 (233)
377 3ake_A Cytidylate kinase; CMP 96.3 0.0025 8.4E-08 51.8 3.8 23 121-143 4-26 (208)
378 3gqb_B V-type ATP synthase bet 96.3 0.0019 6.5E-08 59.6 3.3 46 97-145 128-173 (464)
379 4dcu_A GTP-binding protein ENG 96.3 0.0043 1.5E-07 57.4 5.8 21 121-141 25-45 (456)
380 4tmk_A Protein (thymidylate ki 96.3 0.0049 1.7E-07 51.2 5.6 36 118-153 2-38 (213)
381 2iut_A DNA translocase FTSK; n 96.3 0.028 9.5E-07 53.4 11.3 40 118-157 213-256 (574)
382 2xb4_A Adenylate kinase; ATP-b 96.3 0.0026 8.8E-08 52.9 3.8 23 121-143 2-24 (223)
383 1r6b_X CLPA protein; AAA+, N-t 96.3 0.023 7.8E-07 55.7 11.1 28 118-145 206-233 (758)
384 1cp2_A CP2, nitrogenase iron p 96.3 0.004 1.4E-07 52.9 5.0 36 121-156 3-38 (269)
385 3mfy_A V-type ATP synthase alp 96.3 0.0035 1.2E-07 59.1 4.9 54 97-155 208-261 (588)
386 1bif_A 6-phosphofructo-2-kinas 96.3 0.039 1.3E-06 51.0 11.9 36 118-153 38-73 (469)
387 1ex7_A Guanylate kinase; subst 96.2 0.0027 9.2E-08 51.7 3.4 24 120-143 2-25 (186)
388 3fwy_A Light-independent proto 96.2 0.005 1.7E-07 54.2 5.3 42 115-156 44-85 (314)
389 2qnr_A Septin-2, protein NEDD5 96.2 0.0016 5.5E-08 57.0 2.0 27 122-148 21-48 (301)
390 1u0j_A DNA replication protein 96.2 0.0057 1.9E-07 52.6 5.4 36 107-143 93-128 (267)
391 1e4v_A Adenylate kinase; trans 96.2 0.0032 1.1E-07 51.7 3.7 23 121-143 2-24 (214)
392 3gqb_A V-type ATP synthase alp 96.2 0.0044 1.5E-07 58.4 5.0 53 96-153 201-253 (578)
393 3ug7_A Arsenical pump-driving 96.2 0.014 4.8E-07 52.0 8.1 61 106-170 15-75 (349)
394 3ld9_A DTMP kinase, thymidylat 96.2 0.0043 1.5E-07 51.9 4.4 36 117-152 19-55 (223)
395 3upu_A ATP-dependent DNA helic 96.2 0.0033 1.1E-07 58.2 4.0 36 121-156 47-83 (459)
396 2grj_A Dephospho-COA kinase; T 96.2 0.0034 1.1E-07 51.3 3.6 26 118-143 11-36 (192)
397 3kjh_A CO dehydrogenase/acetyl 96.1 0.0036 1.2E-07 52.2 3.9 36 122-157 3-38 (254)
398 2wji_A Ferrous iron transport 96.1 0.0029 9.9E-08 49.5 3.1 22 121-142 5-26 (165)
399 1fx0_A ATP synthase alpha chai 96.1 0.0019 6.6E-08 60.2 2.2 55 97-154 144-198 (507)
400 2afh_E Nitrogenase iron protei 96.1 0.0058 2E-07 52.6 5.1 36 121-156 4-39 (289)
401 3bfv_A CAPA1, CAPB2, membrane 96.1 0.0086 2.9E-07 51.5 6.1 40 118-157 81-121 (271)
402 3cio_A ETK, tyrosine-protein k 96.1 0.0082 2.8E-07 52.3 6.0 40 118-157 103-143 (299)
403 1ltq_A Polynucleotide kinase; 96.1 0.0031 1.1E-07 54.6 3.3 22 120-141 3-24 (301)
404 3hws_A ATP-dependent CLP prote 96.1 0.0047 1.6E-07 55.1 4.6 26 118-143 50-75 (363)
405 2qmh_A HPR kinase/phosphorylas 96.1 0.003 1E-07 52.0 3.0 26 118-143 33-58 (205)
406 3zvl_A Bifunctional polynucleo 96.0 0.0033 1.1E-07 57.5 3.2 25 118-142 257-281 (416)
407 3qks_A DNA double-strand break 96.0 0.0046 1.6E-07 50.8 3.8 25 120-144 24-48 (203)
408 2r2a_A Uncharacterized protein 96.0 0.0055 1.9E-07 50.3 4.2 25 119-143 5-29 (199)
409 3fkq_A NTRC-like two-domain pr 96.0 0.011 3.6E-07 53.2 6.4 40 117-156 141-181 (373)
410 3d3q_A TRNA delta(2)-isopenten 96.0 0.0037 1.3E-07 55.6 3.3 25 120-144 8-32 (340)
411 1um8_A ATP-dependent CLP prote 96.0 0.0058 2E-07 54.7 4.6 35 117-154 70-104 (376)
412 2f6r_A COA synthase, bifunctio 96.0 0.0041 1.4E-07 53.7 3.4 23 119-141 75-97 (281)
413 2hf9_A Probable hydrogenase ni 96.0 0.0073 2.5E-07 49.6 4.8 34 120-154 39-72 (226)
414 1ega_A Protein (GTP-binding pr 95.9 0.0028 9.5E-08 55.4 2.2 25 118-142 7-31 (301)
415 2wjg_A FEOB, ferrous iron tran 95.9 0.0037 1.3E-07 49.6 2.7 22 121-142 9-30 (188)
416 3zq6_A Putative arsenical pump 95.9 0.0093 3.2E-07 52.5 5.5 38 120-157 15-52 (324)
417 2zej_A Dardarin, leucine-rich 95.9 0.0036 1.2E-07 49.9 2.5 22 121-142 4-25 (184)
418 3a8t_A Adenylate isopentenyltr 95.9 0.0049 1.7E-07 54.8 3.6 27 117-143 38-64 (339)
419 3crm_A TRNA delta(2)-isopenten 95.8 0.0055 1.9E-07 54.2 3.6 24 120-143 6-29 (323)
420 1udx_A The GTP-binding protein 95.8 0.0024 8.2E-08 58.5 1.3 28 115-142 153-180 (416)
421 2oze_A ORF delta'; para, walke 95.8 0.0088 3E-07 51.6 4.9 40 118-157 33-75 (298)
422 1wcv_1 SOJ, segregation protei 95.8 0.009 3.1E-07 50.5 4.8 40 118-157 5-45 (257)
423 1z2a_A RAS-related protein RAB 95.8 0.0056 1.9E-07 47.3 3.2 22 121-142 7-28 (168)
424 1kao_A RAP2A; GTP-binding prot 95.7 0.0059 2E-07 46.9 3.2 23 121-143 5-27 (167)
425 2ce2_X GTPase HRAS; signaling 95.7 0.0059 2E-07 46.8 3.2 22 121-142 5-26 (166)
426 2ocp_A DGK, deoxyguanosine kin 95.7 0.0068 2.3E-07 50.8 3.7 26 118-143 1-26 (241)
427 3la6_A Tyrosine-protein kinase 95.7 0.015 5.1E-07 50.4 5.9 41 118-158 91-132 (286)
428 3tmk_A Thymidylate kinase; pho 95.7 0.0085 2.9E-07 49.9 4.2 29 117-145 3-31 (216)
429 1x6v_B Bifunctional 3'-phospho 95.7 0.012 4E-07 56.7 5.6 38 117-154 50-87 (630)
430 2dyk_A GTP-binding protein; GT 95.7 0.0066 2.2E-07 46.6 3.2 22 121-142 3-24 (161)
431 4hlc_A DTMP kinase, thymidylat 95.7 0.012 4E-07 48.5 4.9 34 119-153 2-35 (205)
432 1hyq_A MIND, cell division inh 95.7 0.015 5E-07 49.1 5.6 37 121-157 5-41 (263)
433 1u8z_A RAS-related protein RAL 95.6 0.0068 2.3E-07 46.6 3.2 22 121-142 6-27 (168)
434 1e9r_A Conjugal transfer prote 95.6 0.011 3.9E-07 54.0 5.2 38 119-156 53-90 (437)
435 1ihu_A Arsenical pump-driving 95.6 0.015 5E-07 55.5 6.1 40 118-157 7-46 (589)
436 3qkt_A DNA double-strand break 95.6 0.0074 2.5E-07 53.5 3.8 24 120-143 24-47 (339)
437 3exa_A TRNA delta(2)-isopenten 95.6 0.0073 2.5E-07 53.2 3.6 25 119-143 3-27 (322)
438 1vt4_I APAF-1 related killer D 95.6 0.037 1.3E-06 56.3 9.0 55 104-160 137-194 (1221)
439 1g3q_A MIND ATPase, cell divis 95.6 0.014 4.8E-07 48.3 5.2 38 120-157 3-41 (237)
440 1ek0_A Protein (GTP-binding pr 95.6 0.0075 2.6E-07 46.6 3.2 23 121-143 5-27 (170)
441 2ged_A SR-beta, signal recogni 95.6 0.0072 2.5E-07 48.2 3.2 25 118-142 47-71 (193)
442 2qag_C Septin-7; cell cycle, c 95.6 0.0045 1.5E-07 56.7 2.2 23 122-144 34-56 (418)
443 1g16_A RAS-related protein SEC 95.6 0.0073 2.5E-07 46.7 3.2 21 122-142 6-26 (170)
444 1z0j_A RAB-22, RAS-related pro 95.6 0.0076 2.6E-07 46.6 3.2 23 121-143 8-30 (170)
445 1wms_A RAB-9, RAB9, RAS-relate 95.5 0.0076 2.6E-07 47.1 3.2 22 121-142 9-30 (177)
446 2fna_A Conserved hypothetical 95.5 0.013 4.3E-07 51.3 4.9 34 120-156 31-64 (357)
447 1c1y_A RAS-related protein RAP 95.5 0.0079 2.7E-07 46.4 3.2 22 121-142 5-26 (167)
448 1z08_A RAS-related protein RAB 95.5 0.0078 2.7E-07 46.6 3.2 22 121-142 8-29 (170)
449 3k9g_A PF-32 protein; ssgcid, 95.5 0.012 4E-07 50.0 4.6 39 118-157 26-65 (267)
450 3foz_A TRNA delta(2)-isopenten 95.5 0.0092 3.2E-07 52.4 3.9 26 118-143 9-34 (316)
451 2erx_A GTP-binding protein DI- 95.5 0.0066 2.3E-07 47.0 2.7 22 121-142 5-26 (172)
452 2nzj_A GTP-binding protein REM 95.5 0.0076 2.6E-07 46.9 3.0 22 121-142 6-27 (175)
453 1r8s_A ADP-ribosylation factor 95.5 0.009 3.1E-07 46.1 3.4 22 122-143 3-24 (164)
454 3k53_A Ferrous iron transport 95.5 0.006 2.1E-07 52.1 2.6 23 121-143 5-27 (271)
455 1m8p_A Sulfate adenylyltransfe 95.5 0.014 4.8E-07 55.6 5.3 38 117-154 394-432 (573)
456 2xau_A PRE-mRNA-splicing facto 95.5 0.091 3.1E-06 51.8 11.3 38 117-154 107-147 (773)
457 1ky3_A GTP-binding protein YPT 95.5 0.0084 2.9E-07 46.9 3.2 22 121-142 10-31 (182)
458 2gks_A Bifunctional SAT/APS ki 95.5 0.014 4.9E-07 55.2 5.3 38 118-155 371-408 (546)
459 3ea0_A ATPase, para family; al 95.5 0.018 6E-07 47.9 5.3 40 118-157 3-44 (245)
460 1r2q_A RAS-related protein RAB 95.4 0.0088 3E-07 46.2 3.2 22 121-142 8-29 (170)
461 2ph1_A Nucleotide-binding prot 95.4 0.017 5.7E-07 49.0 5.2 41 119-159 18-59 (262)
462 2h92_A Cytidylate kinase; ross 95.4 0.009 3.1E-07 49.0 3.4 25 119-143 3-27 (219)
463 3q85_A GTP-binding protein REM 95.4 0.0085 2.9E-07 46.4 3.1 20 122-141 5-24 (169)
464 3io3_A DEHA2D07832P; chaperone 95.4 0.03 1E-06 49.9 7.0 48 106-156 8-57 (348)
465 3q9l_A Septum site-determining 95.4 0.017 5.9E-07 48.4 5.2 38 120-157 3-41 (260)
466 3cwq_A Para family chromosome 95.4 0.017 5.7E-07 47.4 4.9 36 122-158 4-39 (209)
467 3con_A GTPase NRAS; structural 95.4 0.009 3.1E-07 47.5 3.2 22 121-142 23-44 (190)
468 3iqw_A Tail-anchored protein t 95.4 0.017 5.8E-07 51.3 5.3 38 119-156 16-53 (334)
469 2fn4_A P23, RAS-related protei 95.4 0.009 3.1E-07 46.7 3.1 22 121-142 11-32 (181)
470 2v6i_A RNA helicase; membrane, 95.4 0.035 1.2E-06 50.7 7.6 38 118-155 1-39 (431)
471 3lxx_A GTPase IMAP family memb 95.4 0.0075 2.6E-07 50.4 2.7 23 121-143 31-53 (239)
472 1p5z_B DCK, deoxycytidine kina 95.4 0.0047 1.6E-07 52.5 1.5 27 117-143 22-48 (263)
473 1upt_A ARL1, ADP-ribosylation 95.4 0.0098 3.4E-07 46.1 3.2 25 118-142 6-30 (171)
474 3bc1_A RAS-related protein RAB 95.4 0.0096 3.3E-07 47.1 3.2 22 121-142 13-34 (195)
475 2r44_A Uncharacterized protein 95.4 0.0064 2.2E-07 53.3 2.4 26 118-143 45-70 (331)
476 2jlq_A Serine protease subunit 95.3 0.033 1.1E-06 51.2 7.2 38 118-155 18-56 (451)
477 3hjn_A DTMP kinase, thymidylat 95.3 0.021 7.2E-07 46.6 5.3 34 121-154 2-35 (197)
478 2woj_A ATPase GET3; tail-ancho 95.3 0.021 7E-07 51.1 5.6 49 106-157 8-58 (354)
479 3tqf_A HPR(Ser) kinase; transf 95.3 0.011 3.6E-07 47.6 3.3 24 118-141 15-38 (181)
480 4dsu_A GTPase KRAS, isoform 2B 95.3 0.01 3.4E-07 46.9 3.2 23 121-143 6-28 (189)
481 2y8e_A RAB-protein 6, GH09086P 95.3 0.01 3.4E-07 46.3 3.2 22 121-142 16-37 (179)
482 1z0f_A RAB14, member RAS oncog 95.3 0.01 3.6E-07 46.2 3.2 23 121-143 17-39 (179)
483 3q72_A GTP-binding protein RAD 95.3 0.0091 3.1E-07 46.1 2.8 20 122-141 5-24 (166)
484 3clv_A RAB5 protein, putative; 95.3 0.01 3.6E-07 47.1 3.2 22 121-142 9-30 (208)
485 1nrj_B SR-beta, signal recogni 95.3 0.01 3.6E-07 48.3 3.2 24 120-143 13-36 (218)
486 1svi_A GTP-binding protein YSX 95.3 0.0082 2.8E-07 47.9 2.5 23 120-142 24-46 (195)
487 1m2o_B GTP-binding protein SAR 95.3 0.01 3.6E-07 47.5 3.2 23 120-142 24-46 (190)
488 2oil_A CATX-8, RAS-related pro 95.2 0.011 3.7E-07 47.1 3.2 22 121-142 27-48 (193)
489 2chq_A Replication factor C sm 95.2 0.016 5.4E-07 50.0 4.5 23 122-144 41-63 (319)
490 2hxs_A RAB-26, RAS-related pro 95.2 0.0095 3.2E-07 46.6 2.8 22 121-142 8-29 (178)
491 2a9k_A RAS-related protein RAL 95.2 0.011 3.9E-07 46.4 3.2 22 121-142 20-41 (187)
492 1iqp_A RFCS; clamp loader, ext 95.2 0.012 4E-07 51.0 3.6 23 122-144 49-71 (327)
493 2g6b_A RAS-related protein RAB 95.2 0.012 3.9E-07 46.2 3.2 23 121-143 12-34 (180)
494 2hjg_A GTP-binding protein ENG 95.2 0.023 7.9E-07 52.1 5.7 21 121-141 5-25 (436)
495 2efe_B Small GTP-binding prote 95.2 0.012 4E-07 46.2 3.2 22 121-142 14-35 (181)
496 2cjw_A GTP-binding protein GEM 95.2 0.012 4.2E-07 47.3 3.4 22 121-142 8-29 (192)
497 2bme_A RAB4A, RAS-related prot 95.2 0.011 3.9E-07 46.6 3.2 23 121-143 12-34 (186)
498 3ihw_A Centg3; RAS, centaurin, 95.2 0.012 4E-07 47.0 3.2 23 121-143 22-44 (184)
499 3eph_A TRNA isopentenyltransfe 95.2 0.013 4.4E-07 53.3 3.8 25 120-144 3-27 (409)
500 3gmt_A Adenylate kinase; ssgci 95.2 0.013 4.5E-07 49.2 3.6 23 121-143 10-32 (230)
No 1
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=100.00 E-value=2.1e-34 Score=269.11 Aligned_cols=240 Identities=16% Similarity=0.164 Sum_probs=187.6
Q ss_pred hhhhhhhhhhhhhhhcCCCCCCCCcccccccccccccccccccccccccCCCCCCccccCcchHHHHHHHHHHHHHHhcC
Q 024152 2 ASLLRNASLLRRCLLSVSPPHPHPQSFRGGMLETSTQICNFSSKSKRKSKSDGSDSGEENMSKKDLALQQALDQITSSFG 81 (271)
Q Consensus 2 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 81 (271)
|+||++++++|+|+.. +.++...++.+. .+++++++.+|+.++++++.....++.++.+++.++++.+++.+.
T Consensus 103 a~iv~e~~~~R~li~~------~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (444)
T 2q6t_A 103 ARIVAEKWTLRRLIQA------AGEAMRLAYEEA-GSLDEILDTAGKKILEVALTKTDTEARPMRELVHETFEHIEALFQ 175 (444)
T ss_dssp HHHHHHHHHHHHHHHH------HHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHCSCCCSSEEHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHhhccc-cCHHHHHHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHHHHHHh
Confidence 7899999999999998 878888777654 489999999999999998876667788999999999999987665
Q ss_pred CCceeeccccCCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEcCCCCCC
Q 024152 82 KGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHALD 160 (271)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~-~g~v~~~~~e~~~~ 160 (271)
++. ..+++|||++.||.+++ ||++|++++|+|+||+|||||+++++.+++.. +.+|+||+.|++..
T Consensus 176 ~~~-----------~~~~i~tG~~~LD~~lg--Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~~~ 242 (444)
T 2q6t_A 176 NKG-----------EVAGVRTGFKELDQLIG--TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMPAA 242 (444)
T ss_dssp ------------------CCCSCHHHHHHHC--CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSCHH
T ss_pred CCC-----------CCCcccCCCHhhhhhcC--CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCCHH
Confidence 332 57899999999999997 99999999999999999999999999999874 66899999998865
Q ss_pred H----HHHHHcCCcCCcc-------------------------eecC--CCCHHHHHHHHHHHHhcCCccEEEEcchhhh
Q 024152 161 P----SLAETIGVKTENL-------------------------LLAQ--PDCGEQALSLVDTLIRSGSVDVVVVDSVAAL 209 (271)
Q Consensus 161 ~----~~~~~~g~~~~~~-------------------------~~~~--~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~ 209 (271)
+ .++...+++.+++ .+.+ ..+..++++.++++..++++++|||||++.+
T Consensus 243 ~l~~R~~~~~~~i~~~~l~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~l~~~~~~l~~~~~~~lIvID~l~~~ 322 (444)
T 2q6t_A 243 QLTLRMMCSEARIDMNRVRLGQLTDRDFSRLVDVASRLSEAPIYIDDTPDLTLMEVRARARRLVSQNQVGLIIIDYLQLM 322 (444)
T ss_dssp HHHHHHHHHHTTCCTTTCCGGGCCHHHHHHHHHHHHHHHTSCEEEECCTTCBHHHHHHHHHHHHHHSCCCEEEEECGGGC
T ss_pred HHHHHHHHHHcCCCHHHHhCCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEcChhhc
Confidence 4 2344456655432 2222 2367889999999888889999999999998
Q ss_pred cCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccc--------ccchhhhhhh
Q 024152 210 VPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFS--------INLNKIIDES 267 (271)
Q Consensus 210 ~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~--------~~~~~~l~~s 267 (271)
.... . + ....++.+++.++++.|+.+|++++||||+++|++. .|.+.++++|
T Consensus 323 ~~~~--~---~-~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~S 382 (444)
T 2q6t_A 323 SGPG--S---G-KSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRES 382 (444)
T ss_dssp BCC-------------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGG
T ss_pred CCCc--C---C-CCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcch
Confidence 6310 0 0 011245678889999999999999999999999874 2567788876
No 2
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=100.00 E-value=6.7e-34 Score=265.34 Aligned_cols=232 Identities=16% Similarity=0.122 Sum_probs=186.8
Q ss_pred hhhhhhhhhhhhhhhcCCCCCCCCccccccccccccccccc--ccccccccCCCCCCccccCcchHHHHHHHHHHHHHHh
Q 024152 2 ASLLRNASLLRRCLLSVSPPHPHPQSFRGGMLETSTQICNF--SSKSKRKSKSDGSDSGEENMSKKDLALQQALDQITSS 79 (271)
Q Consensus 2 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 79 (271)
|+||++++++|+|+.. +.++...++.+ +++++ ++.+|++++++++.....++.++.+++.++++.+++.
T Consensus 103 a~~v~e~~~~R~li~~------~~~i~~~~~~~---~~~~~~~l~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~i~~~ 173 (444)
T 3bgw_A 103 CQTVSEYFQKRKAISI------AQQIIENVNES---DDGPVKPIQEAVSELMEIEASGTDDDDGSIDEALVTVYEEIESA 173 (444)
T ss_dssp HHHHHHHHHHHHHHHH------HHHHHHHHC---------CCTHHHHHHHHHHHHSCCCSSCCCCCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHhhCC---CHHHHHHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHHHh
Confidence 7899999999999998 88888877654 78999 9999999999988776677889999999999999876
Q ss_pred cCCCceeeccccCCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC
Q 024152 80 FGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL 159 (271)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~ 159 (271)
++ ..+++|||+++||.+++ ||++|++++|+|+||+|||||+++++.+++..+.+|+||+.|++.
T Consensus 174 ~~--------------~~~gi~TG~~~LD~~lg--Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms~ 237 (444)
T 3bgw_A 174 DG--------------NITGVPSGFTELDRMTY--GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGK 237 (444)
T ss_dssp CS--------------SCCSBCCSCHHHHHHHS--SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSCT
T ss_pred hc--------------CCCCcCCCcHHHHhhcC--CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCCH
Confidence 52 57899999999999997 999999999999999999999999999999887799999999988
Q ss_pred CHHH----HHHcCCcCC---------------------------cceecC--CCCHHHHHHHHHHHHhcCCcc--EEEEc
Q 024152 160 DPSL----AETIGVKTE---------------------------NLLLAQ--PDCGEQALSLVDTLIRSGSVD--VVVVD 204 (271)
Q Consensus 160 ~~~~----~~~~g~~~~---------------------------~~~~~~--~~~~~e~~~~~~~l~~~~~~~--lvvID 204 (271)
.+.. +...+++.+ .+.+.+ ..+..++++.+++++.+++++ +||||
T Consensus 238 ~ql~~R~~~~~~~i~~~~l~~g~~~l~~~~~~~l~~a~~~l~~~~l~i~d~~~~s~~~i~~~ir~l~~~~~~~~~lIVID 317 (444)
T 3bgw_A 238 KENIKRLIVTAGSINAQKIKAARRDFASEDWGKLSMAIGEISNSNINIFDKAGQSVNYIWSKTRQTKRKNPGKRVIVMID 317 (444)
T ss_dssp THHHHHHHHHHSCCCHHHHHHTGGGTCCSCHHHHHHHHHHHHTSCEEEECCSSCBHHHHHHHHHHHHHHSCSSCEEEEEE
T ss_pred HHHHHHHHHHHcCCCHHHHhcccCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 7532 333344321 122222 247889999999988888999 99999
Q ss_pred chhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccc--------ccchhhhhhh
Q 024152 205 SVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFS--------INLNKIIDES 267 (271)
Q Consensus 205 ~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~--------~~~~~~l~~s 267 (271)
|++.+..... ..++.+++.++++.|+.+|+++||||++++|++. .|.+.++++|
T Consensus 318 ~Lq~~~~~~~---------~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~krp~lsdlr~S 379 (444)
T 3bgw_A 318 YLQLLEPAKA---------NDSRTNQISQISRDLKKMARELDVVVIALSQLSRQVEQRQDKRPMLSDLRES 379 (444)
T ss_dssp CSTTSBCSCS---------SSCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCGGGGGSSCCCCCGGGCCSC
T ss_pred cHHhccCCCC---------CCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCccccccCCCCCchhhhhhh
Confidence 9999863110 0134567889999999999999999999999873 2567777775
No 3
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=100.00 E-value=1.8e-33 Score=263.49 Aligned_cols=238 Identities=16% Similarity=0.192 Sum_probs=192.7
Q ss_pred hhhhhhhhhhhhhhhcCCCCCCCCcccccccccccccccccccccccccCCCCCCccccCcchHHHHHHHHHHHHHHhcC
Q 024152 2 ASLLRNASLLRRCLLSVSPPHPHPQSFRGGMLETSTQICNFSSKSKRKSKSDGSDSGEENMSKKDLALQQALDQITSSFG 81 (271)
Q Consensus 2 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 81 (271)
|+||++++++|+|+.. +.++...++... .+++++++.+|+.++++++.....++.++.+++.++++.+++.+.
T Consensus 106 a~iv~e~~~~R~li~~------~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (454)
T 2r6a_A 106 ARIVEEKSVLRRLIRT------ATSIAQDGYTRE-DEIDVLLDEADRKIMEVSQRKHSGAFKNIKDILVQTYDNIEMLHN 178 (454)
T ss_dssp HHHHHHHHHHHHHHHH------HHHHHHHHHSCC-SCSHHHHHHHHHHHHHHHTTSCCCCCCCHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHhhccc-cCHHHHHHHHHHHHHHHHhccccccCccHHHHHHHHHHHHHHHHh
Confidence 6899999999999998 888888777654 489999999999999998877667888999999999999998776
Q ss_pred CCceeeccccCCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEcCCCCCC
Q 024152 82 KGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHALD 160 (271)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~-~g~v~~~~~e~~~~ 160 (271)
++. .++++|||++.||.+++ ||++|++++|+|+||+|||||+++++.++++. +.+|+||+.|++..
T Consensus 179 ~~~-----------~~~~i~tG~~~LD~~~g--Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~ 245 (454)
T 2r6a_A 179 RDG-----------EITGIPTGFTELDRMTS--GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQ 245 (454)
T ss_dssp CCC-----------CCCSBCCSCHHHHHHHS--SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHH
T ss_pred CCC-----------CCCCCCCCcHHHHhhcC--CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHH
Confidence 433 67899999999999997 99999999999999999999999999999975 55899999998765
Q ss_pred HHH----HHHcCCcCCc-------------------------ceecC--CCCHHHHHHHHHHHHhcCCccEEEEcchhhh
Q 024152 161 PSL----AETIGVKTEN-------------------------LLLAQ--PDCGEQALSLVDTLIRSGSVDVVVVDSVAAL 209 (271)
Q Consensus 161 ~~~----~~~~g~~~~~-------------------------~~~~~--~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~ 209 (271)
+.. +...++++++ +.+.+ ..+..+++..++++..+.++++++|||++.+
T Consensus 246 ~l~~r~~~~~~~~~~~~l~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~~~~~~l~~~~~~~livID~l~~~ 325 (454)
T 2r6a_A 246 QLVMRMLCAEGNINAQNLRTGKLTPEDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIRAKCRRLKQESGLGMIVIDYLQLI 325 (454)
T ss_dssp HHHHHHHHHHHTCCHHHHHTSCCCHHHHHHHHHHHHHHHSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECGGGS
T ss_pred HHHHHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEccHHHh
Confidence 422 3344554432 22222 2478899999998887788999999999998
Q ss_pred cCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcccccc--------cchhhhhhh
Q 024152 210 VPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFSI--------NLNKIIDES 267 (271)
Q Consensus 210 ~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~~--------~~~~~l~~s 267 (271)
..... ....+.+++.++++.|+.+|+++++|||+++|++.. +.+.++++|
T Consensus 326 ~~~~~--------~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~S 383 (454)
T 2r6a_A 326 QGSGR--------SKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRES 383 (454)
T ss_dssp CCSCC------------CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTT
T ss_pred ccCCC--------CCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhcc
Confidence 73110 112345678889999999999999999999998742 667778776
No 4
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=99.97 E-value=2.5e-30 Score=234.07 Aligned_cols=196 Identities=58% Similarity=0.899 Sum_probs=173.8
Q ss_pred hHHHHHHHHHHHHHHhcCCCceeeccccCCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152 64 KKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 64 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
+...+|..++.+|++.|+.+....+++......+..+|||++.||.++++||+++|++++|+||||+|||||+++++..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~TG~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~ 85 (356)
T 3hr8_A 6 QKKSVLEKALKRIEENFGKGSIMILGDETQVQPVEVIPTGSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEA 85 (356)
T ss_dssp HHHHHHHHHHHHHHHHHCTTSSCCTTCCSCCCCCCEECCSCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCceechhccccCCCceecCCCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34568999999999999998877666542222388999999999999977899999999999999999999999999999
Q ss_pred hhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhh
Q 024152 144 QRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAH 223 (271)
Q Consensus 144 ~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~ 223 (271)
++.++.|+|++.|....+.+++++|++++++.+..+.+.++++..++.+.....+++++||+++.+++..++.+.+|+.+
T Consensus 86 ~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~~~dlvVIDSi~~l~~~~el~g~~G~~q 165 (356)
T 3hr8_A 86 QKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQ 165 (356)
T ss_dssp HHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTSCCSEEEEECTTTCCCHHHHTTCCCSSC
T ss_pred HhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhcCCCeEEehHhhhhcChhhhcccchhhH
Confidence 99889999999999999889999999999999999999999999888887778899999999999986567777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccccc
Q 024152 224 MAMQARLMSQALRKLSHSLSLSQTILIFINQVFSIN 259 (271)
Q Consensus 224 ~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~~~ 259 (271)
+..+++.+++.++.|+.++++.+++||+++|++.+.
T Consensus 166 ~~~qar~la~~L~~L~~lak~~~~tVI~inqv~~k~ 201 (356)
T 3hr8_A 166 VGLQARLMSQALRKIAGSVNKSKAVVIFTNQIRMKI 201 (356)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTSSCEEEEEEESSSCS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeeeecc
Confidence 778889999999999999999999999999997544
No 5
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=99.96 E-value=2.4e-29 Score=225.00 Aligned_cols=205 Identities=16% Similarity=0.149 Sum_probs=144.0
Q ss_pred cccccccccccccCCCCCCccccCcchHHHHHHHHHHHHHHhcCCCceeeccccCCCCCCCccccCcHHHHHHhcCCCCC
Q 024152 38 QICNFSSKSKRKSKSDGSDSGEENMSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLP 117 (271)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~Tg~~~LD~~l~~GGl~ 117 (271)
+++++++.+|++++++++.....++..+.+++.++++.|++. . . ..+++|||++.||.+++ ||+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~-----------~~~~i~TG~~~LD~~lg--Gl~ 66 (315)
T 3bh0_A 3 GPVKPIQEAVSELMEIEASGTDDDDGSIDEALVTVYEEIESA-D--G-----------NITGVPSGFTELDRMTY--GYK 66 (315)
T ss_dssp -----------------------CCCCCHHHHHHHHHHHHTC-S--S-----------SCCSBCCSCHHHHHHHS--SBC
T ss_pred CHHHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHhc-c--C-----------CCCCccCChHHHHhhcC--CCC
Confidence 688999999999999998777677889999999999999865 1 1 56899999999999997 999
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHH----HHHcCCcCC---------------------
Q 024152 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSL----AETIGVKTE--------------------- 172 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~----~~~~g~~~~--------------------- 172 (271)
+|++++|+|+||+|||||+++++.+++..+.+|+||+.|++..+.. +...+++.+
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~s~~~l~~R~~~~~~~i~~~~l~~~~~~l~~~~~~~l~~a~ 146 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKKENIKRLIVTAGSINAQKIKAARRDFASEDWGKLSMAI 146 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSSCHHHHHHHHHHHHTTCCHHHHHSCHHHHCSSCHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHHHHHcCCCHHHHhcCCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999998778999999998765422 222343311
Q ss_pred ------cceecCC--CCHHHHHHHHHHHHhcCCcc--EEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHH
Q 024152 173 ------NLLLAQP--DCGEQALSLVDTLIRSGSVD--VVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSL 242 (271)
Q Consensus 173 ------~~~~~~~--~~~~e~~~~~~~l~~~~~~~--lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~la 242 (271)
.+.+.+. .+.+++++.++++..+++++ +|||||++.+... . . ...+.+++.++++.|+.+|
T Consensus 147 ~~l~~~~i~i~d~~~~~~~~i~~~i~~l~~~~~~~~~lVVID~l~~l~~~-~-~-------~~~r~~~i~~~~~~Lk~lA 217 (315)
T 3bh0_A 147 GEISNSNINIFDKAGQSVNYIWSKTRQTKRKNPGKRVIVMIDYLQLLEPA-K-A-------NDSRTNQISQISRDLKKMA 217 (315)
T ss_dssp HHHHTSCEEEECCSCCBHHHHHHHHHHHHHTSSSCCEEEEEECGGGSBCS-C-T-------TSCHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCchhcCCC-C-C-------CCCHHHHHHHHHHHHHHHH
Confidence 2233322 47889999999988888899 9999999998631 1 0 0134467888999999999
Q ss_pred hhcCcEEEEEcccccc--------cchhhhhhh
Q 024152 243 SLSQTILIFINQVFSI--------NLNKIIDES 267 (271)
Q Consensus 243 ke~~~~Vi~~sql~~~--------~~~~~l~~s 267 (271)
++++|||++++|+... +.+.++++|
T Consensus 218 k~~~i~vi~lsql~r~~e~r~~~~p~l~dlr~s 250 (315)
T 3bh0_A 218 RELDVVVIALSQLSRQVEQRQDKRPMLSDLRES 250 (315)
T ss_dssp HHHTCEEEEEECCCGGGTTSSSCCCCGGGGTTT
T ss_pred HHhCCeEEEEeecCcccccCCCCCCCHHHhhhh
Confidence 9999999999998733 556667665
No 6
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=99.96 E-value=3.7e-28 Score=221.03 Aligned_cols=196 Identities=59% Similarity=0.920 Sum_probs=162.1
Q ss_pred chHHHHHHHHHHHHHHhcCCCceeeccccCCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 024152 63 SKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAE 142 (271)
Q Consensus 63 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~ 142 (271)
.+...++..++++|++.|+.+....+++. ....++++|||++.||.++++|||++|++++|+|+||+|||||+++++.+
T Consensus 19 ~~~~~~l~~~~~~i~~~~~~~~~~~l~~~-~~~~~~~i~TG~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 19 KERSKAIETAMSQIEKAFGKGSIMKLGAE-SKLDVQVVSTGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTSSCCTTSC-CCCCCCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCcceecccc-ccccCceecCCCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 46678999999999999998876655543 34568899999999999997679999999999999999999999999999
Q ss_pred HhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchh
Q 024152 143 AQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDA 222 (271)
Q Consensus 143 ~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~ 222 (271)
++..+++|+||+.|+...+.+++.+|++.+++.+.++.+.+++++.++.+....++++|||||++.+.+..++.+..++.
T Consensus 98 ~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~ 177 (366)
T 1xp8_A 98 AQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDS 177 (366)
T ss_dssp HHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCSEEEEECTTTCCCSTTC-------
T ss_pred HHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcCCCCEEEEeChHHhccccccccccccc
Confidence 99888899999999999988888999999999888888999999999888877889999999999998544444322322
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccccc
Q 024152 223 HMAMQARLMSQALRKLSHSLSLSQTILIFINQVFSIN 259 (271)
Q Consensus 223 ~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~~~ 259 (271)
+...+++.+++.++.|+.++++.+++||+++|++..+
T Consensus 178 ~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq~~~~~ 214 (366)
T 1xp8_A 178 LPGLQARLMSQALRKLTAILSKTGTAAIFINQVREKI 214 (366)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC----
T ss_pred hhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEeccccc
Confidence 1224567889999999999999999999999998643
No 7
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=99.96 E-value=3.2e-28 Score=220.77 Aligned_cols=193 Identities=63% Similarity=0.958 Sum_probs=159.1
Q ss_pred HHHHHHHHHHHHHHhcCCCceeeccccCCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHh
Q 024152 65 KDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQ 144 (271)
Q Consensus 65 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~ 144 (271)
...++..++++|++.|+++.++.+++. ....++++|||++.||.+++.|||++|++++|+|+||+|||||+++++.+++
T Consensus 10 ~~~~l~~~~~~i~~~~~~~~~~~l~~~-~~~~~~~i~TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~ 88 (356)
T 1u94_A 10 KQKALAAALGQIEKQFGKGSIMRLGED-RSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 88 (356)
T ss_dssp CHHHHHHHHHHHHHHHCTTSSCCTTCC-CBCCCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCCCCceEcccc-ccccCCcccCCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456889999999999999887777653 3456899999999999999656999999999999999999999999999999
Q ss_pred hcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhH
Q 024152 145 RQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHM 224 (271)
Q Consensus 145 ~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~ 224 (271)
..+++|+|++.|+...+.+++.+|++.+++.+.++.+.++++..++.+....++++||||+++.+.+..++.+..++...
T Consensus 89 ~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~ 168 (356)
T 1u94_A 89 REGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHM 168 (356)
T ss_dssp HTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC------
T ss_pred HCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHhccCCCEEEEcCHHHhcchhhhccccccchh
Confidence 88889999999999988888899999999888888888999888888877788999999999998753333322222222
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCcEEEEEcccccc
Q 024152 225 AMQARLMSQALRKLSHSLSLSQTILIFINQVFSI 258 (271)
Q Consensus 225 ~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~~ 258 (271)
..+++.+++.++.|+.++++.+++||+++|++..
T Consensus 169 ~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~~~ 202 (356)
T 1u94_A 169 GLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMK 202 (356)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC----
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccc
Confidence 2445788999999999999999999999999865
No 8
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=99.96 E-value=8e-29 Score=222.74 Aligned_cols=182 Identities=18% Similarity=0.175 Sum_probs=147.5
Q ss_pred hHHHHHHHHHHHHHHhcC-CCceeeccccCCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 024152 64 KKDLALQQALDQITSSFG-KGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAE 142 (271)
Q Consensus 64 ~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~ 142 (271)
++.+++.++++.|++.+. +.. .++++||||++||.+++ ||++|++++|+|+||+|||||+++++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~-----------~~~gi~TG~~~LD~~~g--Gl~~G~LiiIaG~pG~GKTt~al~ia~~ 69 (338)
T 4a1f_A 3 NIKEVLESAMDLITENQRKGSL-----------EVTGIPTGFVQLDNYTS--GFNKGSLVIIGARPSMGKTSLMMNMVLS 69 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTT-----------CCCSBCCSCHHHHHHHC--SBCTTCEEEEEECTTSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhcCCC-----------CcCcccCCChHHHHHhc--CCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 467889999999998876 433 68999999999999997 9999999999999999999999999999
Q ss_pred HhhcCCeEEEEcCCCCCCHH----HHHHcCCcCC-------------------------cceecC--CCCHHHHHHHHHH
Q 024152 143 AQRQGGYCVFIDAEHALDPS----LAETIGVKTE-------------------------NLLLAQ--PDCGEQALSLVDT 191 (271)
Q Consensus 143 ~~~~~g~v~~~~~e~~~~~~----~~~~~g~~~~-------------------------~~~~~~--~~~~~e~~~~~~~ 191 (271)
++..+++|+||+.|++..+. ++...+++.+ .+++.+ ..+..++++.+++
T Consensus 70 ~a~~g~~Vl~fSlEms~~ql~~Rlls~~~~v~~~~l~~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~~i~~~ir~ 149 (338)
T 4a1f_A 70 ALNDDRGVAVFSLEMSAEQLALRALSDLTSINMHDLESGRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIEQIRLQLRK 149 (338)
T ss_dssp HHHTTCEEEEEESSSCHHHHHHHHHHHHHCCCHHHHHHTCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHHHHHHHHHH
T ss_pred HHHcCCeEEEEeCCCCHHHHHHHHHHHhhCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHHHHHHHHHH
Confidence 99988899999999886542 2222333322 123322 2478899999999
Q ss_pred HHhcC-CccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccc--------ccchh
Q 024152 192 LIRSG-SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFS--------INLNK 262 (271)
Q Consensus 192 l~~~~-~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~--------~~~~~ 262 (271)
+..++ ++++||||||+.+.. +. ...++.++++++++.|+.+|++++||||+++|++. .|.++
T Consensus 150 l~~~~gg~~lIVIDyLqlm~~--------~~-~~~~r~~ei~~isr~LK~lAkel~vpVi~lsQl~R~~e~r~dkrP~ls 220 (338)
T 4a1f_A 150 LKSQHKELGIAFIDYLQLMSG--------SK-ATKERHEQIAEISRELKTLARELEIPIIALVQLNRSLENRDDKRPILS 220 (338)
T ss_dssp HHHHCTTEEEEEEEEEECCCT--------HH-HHHHCCCCHHHHHHHHHHHHHHHTSCEEEEEECCGGGGGSSSCSCCGG
T ss_pred HHHhcCCCCEEEEechHHhcC--------CC-CCCChHHHHHHHHHHHHHHHHHcCCeEEEEEecCccccccccCCCChH
Confidence 88887 899999999999863 11 12355567889999999999999999999999974 36788
Q ss_pred hhhhh
Q 024152 263 IIDES 267 (271)
Q Consensus 263 ~l~~s 267 (271)
++++|
T Consensus 221 DLreS 225 (338)
T 4a1f_A 221 DIKDS 225 (338)
T ss_dssp GSEET
T ss_pred hcccc
Confidence 88887
No 9
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=99.96 E-value=4.1e-28 Score=219.71 Aligned_cols=194 Identities=58% Similarity=0.949 Sum_probs=162.5
Q ss_pred hHHHHHHHHHHHHHHhcCCCceeeccccCCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152 64 KKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 64 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
+...++..++++|++.|+++.++.+++. .....++++||++.||.+++.||+++|++++|+|+||+|||||+++++.++
T Consensus 7 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~~~~~~i~TG~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 7 DREKALELAMAQIDKNFGKGSVMRLGEE-VRQPISVIPTGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANA 85 (349)
T ss_dssp CHHHHHHHHHHHHHHHHCTTSSCCTTCC-CCCCCCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCceecccc-ccccCCccccCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4567899999999999999887777653 345688999999999999976799999999999999999999999999999
Q ss_pred hhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhh
Q 024152 144 QRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAH 223 (271)
Q Consensus 144 ~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~ 223 (271)
+..+++|+|++.|....+.+++.+|++++++.+.++.+.++++..++.+....++++++||+++.+.+..++.+.+|+..
T Consensus 86 ~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~ 165 (349)
T 2zr9_A 86 QAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSH 165 (349)
T ss_dssp HHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----C
T ss_pred HhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccch
Confidence 98888999999999988888889999999999888889999999888887777899999999999874333333223221
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCcEEEEEcccccc
Q 024152 224 MAMQARLMSQALRKLSHSLSLSQTILIFINQVFSI 258 (271)
Q Consensus 224 ~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~~ 258 (271)
...+++.+++.++.|+.++++.+++||+++|++..
T Consensus 166 ~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~ 200 (349)
T 2zr9_A 166 VGLQARLMSQALRKMTGALNNSGTTAIFINELREK 200 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC--
T ss_pred hhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccc
Confidence 12455678899999999999999999999999864
No 10
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=99.95 E-value=3.3e-27 Score=208.62 Aligned_cols=161 Identities=29% Similarity=0.480 Sum_probs=132.1
Q ss_pred CCCccccCcHHHHHHhc---CCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhc--CCeEEEEcCCCCCCHHHHHHcCCc
Q 024152 96 HVPVVSTGSFALDIALG---TGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ--GGYCVFIDAEHALDPSLAETIGVK 170 (271)
Q Consensus 96 ~~~~i~Tg~~~LD~~l~---~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~--~g~v~~~~~e~~~~~~~~~~~g~~ 170 (271)
.++.++||+++||.+|+ +||+++| +++|.||||+|||||+++++.+++.. ++.|+|++.|..+.+.+++++|++
T Consensus 3 ~~~risTGi~~LD~~LGg~~~GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd 81 (333)
T 3io5_A 3 HMDVVRTKIPMMNIALSGEITGGMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVD 81 (333)
T ss_dssp ---CBCCSCHHHHHHHHSSTTCCBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCC
T ss_pred CCCEecCCCHHHHHHhCCCCCCCCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCC
Confidence 46789999999999998 4899999 99999999999999999999999876 779999999999999899999999
Q ss_pred CCcceecCCCCHHHH-HHHHHHH--HhcCCccEEEEcchhhhcCCCccCCccchhhHH--HHHHHHHHHHHHHHHHHhhc
Q 024152 171 TENLLLAQPDCGEQA-LSLVDTL--IRSGSVDVVVVDSVAALVPKGELDGEMGDAHMA--MQARLMSQALRKLSHSLSLS 245 (271)
Q Consensus 171 ~~~~~~~~~~~~~e~-~~~~~~l--~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~--~~~~~l~~~~r~L~~lake~ 245 (271)
.+++.+..+.+.+++ +..+..+ +.+..++++||||++.+++..++.+++|+.+.+ .++|.+++.++.|..+|++.
T Consensus 82 ~d~llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~ 161 (333)
T 3io5_A 82 PERVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTK 161 (333)
T ss_dssp GGGEEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHT
T ss_pred HHHeEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999998 7777665 556789999999999998777777766655444 68899999999999999999
Q ss_pred CcEEEEEccccc
Q 024152 246 QTILIFINQVFS 257 (271)
Q Consensus 246 ~~~Vi~~sql~~ 257 (271)
|++||+++|+++
T Consensus 162 ~i~vi~tNQV~k 173 (333)
T 3io5_A 162 NIPCIAINHTYE 173 (333)
T ss_dssp TCEEEEEEEC--
T ss_pred CCEEEEECCeee
Confidence 999999999987
No 11
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=99.93 E-value=1.7e-25 Score=235.23 Aligned_cols=195 Identities=63% Similarity=0.944 Sum_probs=169.1
Q ss_pred hHHHHHHHHHHHHHHhcCCCceeeccccCCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152 64 KKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 64 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
+...++..+++++++.|+++.++.+++. .....+++|||+++||.+++.||+++|++++|+||||+|||||+++++.++
T Consensus 329 ~~~~~l~~a~~~i~~~~g~~~~~~l~~~-~~~~~~~I~TG~~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~ 407 (2050)
T 3cmu_A 329 NKQKALAAALGQIEKQFGKGSIMRLGED-RSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 407 (2050)
T ss_dssp THHHHHHHHHHHHHHHHCTTSEEEGGGC-TTTSCCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCcCcceecccc-cccCCceeeCCCHHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3456788999999999999998887764 345689999999999999966799999999999999999999999999999
Q ss_pred hhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhh
Q 024152 144 QRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAH 223 (271)
Q Consensus 144 ~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~ 223 (271)
+..+++|+||+.|+...+.+++.+|++.+++.+.++.+.+++++.++.++.+.++++|||||++.+.++.++.+.+|+.+
T Consensus 408 a~~G~~vlyis~E~s~~~~~a~~lGvd~~~L~I~~~~~~e~il~~~~~lv~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~ 487 (2050)
T 3cmu_A 408 QREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSH 487 (2050)
T ss_dssp HTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCC
T ss_pred HhcCCeEEEEEcCCCHHHHHHHHcCCCHHHeEEeCCCCHHHHHHHHHHHHHhcCCcEEEECCHHHhhcccccccccccch
Confidence 98888999999999999888899999999999999999999999999888788999999999999985344333334333
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccccc
Q 024152 224 MAMQARLMSQALRKLSHSLSLSQTILIFINQVFSIN 259 (271)
Q Consensus 224 ~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~~~ 259 (271)
...+++++++.++.|+.+|++.++|||+++|++..+
T Consensus 488 ~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~~~v 523 (2050)
T 3cmu_A 488 MGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKI 523 (2050)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECT
T ss_pred hhHHHHHHHHHHHHHHHHHHHcCCeEEEEeeccccc
Confidence 345667899999999999999999999999998653
No 12
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.93 E-value=1.9e-25 Score=232.65 Aligned_cols=192 Identities=63% Similarity=0.957 Sum_probs=166.6
Q ss_pred HHHHHHHHHHHHHhcCCCceeeccccCCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh
Q 024152 66 DLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR 145 (271)
Q Consensus 66 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~ 145 (271)
..++..++.++++.|+++.++.+++. .....+++|||+++||.+++.|||++|++++|+||||+|||||+++++.+++.
T Consensus 331 ~~~l~~a~~~i~~~fg~~~~~~l~~~-~~~~~~~isTGi~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~ 409 (1706)
T 3cmw_A 331 QKALAAALGQIEKQFGKGSIMRLGED-RSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR 409 (1706)
T ss_dssp HHHHHHHHHHHHHHHCGGGSEEGGGC-GGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcceecccc-ccccCceeccCcHHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 45788999999999999988877754 23468899999999999996679999999999999999999999999999999
Q ss_pred cCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHH
Q 024152 146 QGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMA 225 (271)
Q Consensus 146 ~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~ 225 (271)
.+++|+||+.|+...+.+++.+|++.+++.+.++.+.++++..++.++.+.++++|||||++.+.+..++.+.+|+.+..
T Consensus 410 ~G~~vlyis~E~s~~~~~a~~lGvd~~~L~i~~~~~~e~~l~~l~~lv~~~~~~lVVIDSL~al~~~~e~e~~~g~~~~~ 489 (1706)
T 3cmw_A 410 EGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMG 489 (1706)
T ss_dssp TTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTT
T ss_pred hCCCeEEEEccCchHHHHHHHcCCCHHHeEEcCCCCHHHHHHHHHHHHHhcCCCEEEECCHHHhhccccccccccccchh
Confidence 88899999999999998899999999999998888999999998888878899999999999987533333323333333
Q ss_pred HHHHHHHHHHHHHHHHHhhcCcEEEEEcccccc
Q 024152 226 MQARLMSQALRKLSHSLSLSQTILIFINQVFSI 258 (271)
Q Consensus 226 ~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~~ 258 (271)
.+++++++.++.|+.++++.+||||+++|++..
T Consensus 490 ~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~~~ 522 (1706)
T 3cmw_A 490 LAARMMSQAMRKLAGNLKQSNTLLIFINQIRMK 522 (1706)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCEEEEEECEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 567889999999999999999999999999865
No 13
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.91 E-value=7.5e-24 Score=220.77 Aligned_cols=195 Identities=63% Similarity=0.941 Sum_probs=173.8
Q ss_pred hHHHHHHHHHHHHHHhcCCCceeeccccCCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152 64 KKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 64 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
+-..++..++.+|++.|++++.+.+++.. ....+.+|||+..||.+||.||+|+|.+++|.||+|+|||||+++++..+
T Consensus 1377 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~tG~~~lD~~lg~gG~prg~~iei~g~~~sGkttl~~~~~a~~ 1455 (1706)
T 3cmw_A 1377 NKQKALAAALGQIEKQFGKGSIMRLGEDR-SMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 1455 (1706)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGSEEGGGCG-GGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhcCCccEEECCCCC-CCcCceecCCCHHHHHhcCCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34557888999999999999998888643 44689999999999999997799999999999999999999999999999
Q ss_pred hhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhh
Q 024152 144 QRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAH 223 (271)
Q Consensus 144 ~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~ 223 (271)
+..++.++||+.|...++.+++.+|++.+++.+.++.+.++.++.+..+++...+++|+||++..+.|..++.++.|+.+
T Consensus 1456 ~~~g~~~~~i~~e~~~~~~~~~~~Gv~~~~l~~~~p~~~e~~l~~~~~~~~s~~~~~vvvDsv~al~~~~e~~~~~~~~~ 1535 (1706)
T 3cmw_A 1456 QREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSH 1535 (1706)
T ss_dssp HHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCCTTTTC-------
T ss_pred HhcCCeEEEEecCCCCCHHHHHHcCCCHHHeEEeCCCcHHHHHHHHHHHHHcCCCCEEEEccHHhCCccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999889998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccccc
Q 024152 224 MAMQARLMSQALRKLSHSLSLSQTILIFINQVFSIN 259 (271)
Q Consensus 224 ~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~~~ 259 (271)
.+.++|.+++.+|.|...++..+|++|++||++.++
T Consensus 1536 ~~~~ar~m~~~lr~l~~~~~~~~~~~i~~~~~~~~~ 1571 (1706)
T 3cmw_A 1536 MGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKI 1571 (1706)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTCEEEEEECBC---
T ss_pred hhHHHHHHHHHHHHHHHHHHhCCcEEEEeecccccc
Confidence 889999999999999999999999999999999765
No 14
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=99.91 E-value=1.2e-23 Score=221.26 Aligned_cols=195 Identities=63% Similarity=0.944 Sum_probs=176.9
Q ss_pred hHHHHHHHHHHHHHHhcCCCceeeccccCCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152 64 KKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 64 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
+...++..++.+|++.|++++.+.+++. ....++.+|||.-.||..||.||+|+|.++.|+||.++|||||++++...+
T Consensus 1721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~d~~l~~gg~p~g~~~e~~~~~~~g~~~~~~~~~~~~ 1799 (2050)
T 3cmu_A 1721 NKQKALAAALGQIEKQFGKGSIMRLGED-RSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 1799 (2050)
T ss_dssp THHHHHHHHHHHHHHHHCTTSEEEGGGC-TTTCCCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCcceEECCCC-cccCCCcccCCcHHHHHhhCCCCCcCCcEEEEECCCCcCHHHHHHHHHHHH
Confidence 4566899999999999999999999974 356789999999999999999999999999999999999999999999999
Q ss_pred hhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhh
Q 024152 144 QRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAH 223 (271)
Q Consensus 144 ~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~ 223 (271)
++.+|.+.|++.|...++.+++.+|++.+++.+.+|.+.++.++++..+++...+++||||++..+.|+.++.++.|+.+
T Consensus 1800 ~~~~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~p~~~~~~~~~~~~ 1879 (2050)
T 3cmu_A 1800 QREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSH 1879 (2050)
T ss_dssp HTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHC-------
T ss_pred hhcCCEEEEEcCccccCHHHHHHcCCCHHHeEEecCCcHHHHHHHHHHHHhcCCCcEEEEcchhhcCcHHHhcCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccccc
Q 024152 224 MAMQARLMSQALRKLSHSLSLSQTILIFINQVFSIN 259 (271)
Q Consensus 224 ~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~~~ 259 (271)
.+.++|.|++.+|.|.....+.+|+|||+||++.++
T Consensus 1880 ~~~~~r~~~~~~r~~~~~~~~~~~~~~~~~q~r~~~ 1915 (2050)
T 3cmu_A 1880 MGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKI 1915 (2050)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTTTCEEEEEECCC---
T ss_pred hhHHHHHHHHHHHHHHhhhccCceEEEEhhHhHHHh
Confidence 999999999999999999999999999999999776
No 15
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=99.89 E-value=8.6e-23 Score=183.05 Aligned_cols=171 Identities=26% Similarity=0.386 Sum_probs=122.9
Q ss_pred CCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhc------CCeEEEEcCCCCCCHH----HHH
Q 024152 96 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ------GGYCVFIDAEHALDPS----LAE 165 (271)
Q Consensus 96 ~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~------~g~v~~~~~e~~~~~~----~~~ 165 (271)
...+++||++.||.+++ ||+++|++++|+|+||+|||||+++++.+++.. +++|+|++.|+.+... +++
T Consensus 85 ~~~~i~TG~~~LD~~L~-GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~ 163 (324)
T 2z43_A 85 NVKKISTGSQALDGLLA-GGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAK 163 (324)
T ss_dssp SCCEECCSCHHHHHHTT-TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHH
T ss_pred cCCcccCCchhHHHhcC-CCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 56899999999999998 899999999999999999999999999987654 6789999999986542 456
Q ss_pred HcCCcCC----cceecCCCCHHH---HHHHHHHHHhc-CCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHH
Q 024152 166 TIGVKTE----NLLLAQPDCGEQ---ALSLVDTLIRS-GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRK 237 (271)
Q Consensus 166 ~~g~~~~----~~~~~~~~~~~e---~~~~~~~l~~~-~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~ 237 (271)
.++++++ ++.+.+..+.++ ++..++.+..+ .+++++|||+++.+.. .++.+. | ....+++.+.+.++.
T Consensus 164 ~~g~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~-~~~~~~-g--~~~~r~~~~~~~l~~ 239 (324)
T 2z43_A 164 ALGLDIDNVMNNIYYIRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFR-AEYPGR-E--NLAVRQQKLNKHLHQ 239 (324)
T ss_dssp HTTCCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHH-HHSCTT-T--SHHHHHHHHHHHHHH
T ss_pred HhCCCHHHHhccEEEEeCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhh-hhhcCc-c--cHHHHHHHHHHHHHH
Confidence 6787764 456666666664 45556666666 7899999999998863 222211 1 122445678899999
Q ss_pred HHHHHhhcCcEEEEEcccccccc-------hhhhhhhccCC
Q 024152 238 LSHSLSLSQTILIFINQVFSINL-------NKIIDESSGHL 271 (271)
Q Consensus 238 L~~lake~~~~Vi~~sql~~~~~-------~~~l~~s~~~~ 271 (271)
|+.++++.+++||+++|+....- .+..+..|.|+
T Consensus 240 L~~la~~~~~~Vi~~nq~~~~~~~~~~~~~~~~gg~~l~~~ 280 (324)
T 2z43_A 240 LTRLAEVYDIAVIITNQVMARPDMFYGDPTVAVGGHTLYHV 280 (324)
T ss_dssp HHHHHHHHTCEEEEEEEC-----------------------
T ss_pred HHHHHHHhCCEEEEEcceeecCCCcCCCCCCCCchHHHHhh
Confidence 99999999999999999986542 24555667663
No 16
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=99.89 E-value=8.5e-23 Score=184.49 Aligned_cols=159 Identities=28% Similarity=0.448 Sum_probs=122.0
Q ss_pred CCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh------cCCeEEEEcCCCCCCHH----HHH
Q 024152 96 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR------QGGYCVFIDAEHALDPS----LAE 165 (271)
Q Consensus 96 ~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~------~~g~v~~~~~e~~~~~~----~~~ 165 (271)
...+++||++.||.+++ ||+++|++++|+|+||+|||||+++++.+++. .+++|+||+.|+.+... ++.
T Consensus 100 ~~~~i~TG~~~LD~~Lg-GGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~ 178 (343)
T 1v5w_A 100 MVFHITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIAD 178 (343)
T ss_dssp GCCCBCCSCHHHHHHTT-SSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHH
T ss_pred ccceeecCChhHHHHhc-CCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 46889999999999998 89999999999999999999999999998754 46789999999986643 566
Q ss_pred HcCCcC----CcceecCCCCHHH---HHHHHHHHHhc--CCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHH
Q 024152 166 TIGVKT----ENLLLAQPDCGEQ---ALSLVDTLIRS--GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALR 236 (271)
Q Consensus 166 ~~g~~~----~~~~~~~~~~~~e---~~~~~~~l~~~--~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r 236 (271)
.+++++ +++.+.+..+.++ ++..++.+..+ .++++||||+++.+.. .++.+. | ....+++.+.+.++
T Consensus 179 ~~g~~~~~~l~~l~~~~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~-~~~~~~-g--~~~~r~~~l~~~l~ 254 (343)
T 1v5w_A 179 RFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFR-VDFSGR-G--ELAERQQKLAQMLS 254 (343)
T ss_dssp HTTCCHHHHHHTEEEEECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHH-HHCCGG-G--CHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHhceeEeecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHH-HHhccc-c--cHHHHHHHHHHHHH
Confidence 677776 3555555555554 44445666666 7899999999998873 333211 1 12345567889999
Q ss_pred HHHHHHhhcCcEEEEEccccccc
Q 024152 237 KLSHSLSLSQTILIFINQVFSIN 259 (271)
Q Consensus 237 ~L~~lake~~~~Vi~~sql~~~~ 259 (271)
.|+.++++++++||+++|+....
T Consensus 255 ~L~~la~~~~~~Vi~~nq~~~~~ 277 (343)
T 1v5w_A 255 RLQKISEEYNVAVFVTNQMTADP 277 (343)
T ss_dssp HHHHHHHHHTCEEEEEECC----
T ss_pred HHHHHHHHhCCEEEEEeeceecC
Confidence 99999999999999999998654
No 17
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=99.89 E-value=5.1e-23 Score=194.78 Aligned_cols=151 Identities=12% Similarity=0.133 Sum_probs=122.0
Q ss_pred CCCcccc-CcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEcCCCCCCH----HHHHHcCC
Q 024152 96 HVPVVST-GSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHALDP----SLAETIGV 169 (271)
Q Consensus 96 ~~~~i~T-g~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~-~g~v~~~~~e~~~~~----~~~~~~g~ 169 (271)
...+++| |++.||.+++ |+++|++++|+|+||+|||||+++++.+++.. +.+|+||+.|++..+ .++...++
T Consensus 220 ~~~~i~t~G~~~LD~~lg--Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s~~~l~~r~~~~~~~~ 297 (503)
T 1q57_A 220 ESVGLLFSGCTGINDKTL--GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRV 297 (503)
T ss_dssp CTTCSCCSSCTTHHHHHC--CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSCHHHHHHHHHHHHTTS
T ss_pred ccCCccccchhhhhHhhc--ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHHcCC
Confidence 5689999 9999999997 99999999999999999999999999999986 678999999988654 22344555
Q ss_pred cCCc--------------------------ceecCC---CCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccc
Q 024152 170 KTEN--------------------------LLLAQP---DCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMG 220 (271)
Q Consensus 170 ~~~~--------------------------~~~~~~---~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g 220 (271)
+.+. +.+.+. .+.++++..++++..++++++||||||+.+... . . +
T Consensus 298 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~i~~~i~~~~~~~~~~lvVID~l~~l~~~-~-~---~ 372 (503)
T 1q57_A 298 RLRQSDSLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSA-S-G---E 372 (503)
T ss_dssp CCTTCHHHHHHHHHTSHHHHHHHHHHTTTCEEEECCC---CHHHHHHHHHHHHHTTCCSEEEEECTTCCCSC-C-S---C
T ss_pred ChhhccccccCCCCHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEccchhcCCC-C-C---C
Confidence 4432 233332 578899999999888889999999999988631 1 0 1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccc
Q 024152 221 DAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 221 ~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~ 257 (271)
..+.+.+.++++.|+.+|++++|||++++|++.
T Consensus 373 ----~~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~~r 405 (503)
T 1q57_A 373 ----SDERKMIDNLMTKLKGFAKSTGVVLVVICHLKN 405 (503)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCC
T ss_pred ----CCHHHHHHHHHHHHHHHHHHHCCeEEEEEcCCc
Confidence 133467888999999999999999999999985
No 18
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=99.89 E-value=5.2e-23 Score=184.10 Aligned_cols=159 Identities=28% Similarity=0.425 Sum_probs=123.4
Q ss_pred CCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh------------cC----CeEEEEcCCCCC
Q 024152 96 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR------------QG----GYCVFIDAEHAL 159 (271)
Q Consensus 96 ~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~------------~~----g~v~~~~~e~~~ 159 (271)
...+++||++.||.+++ ||+++|++++|+|+||+|||+|+++++.+++. .+ ++|+|++.|+.+
T Consensus 76 ~~~~i~TG~~~LD~~l~-GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~ 154 (322)
T 2i1q_A 76 TVWKLSTSSSELDSVLG-GGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTF 154 (322)
T ss_dssp TCCEECCSCHHHHHHTT-SSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCC
T ss_pred cCCeecCCChhHHHhcC-CCccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCC
Confidence 57899999999999998 89999999999999999999999999987542 23 689999999986
Q ss_pred CHH----HHHHcCCcC----CcceecCCCCHHH---HHHHHHHHHhc-CCccEEEEcchhhhcCCCccCCccchhhHHHH
Q 024152 160 DPS----LAETIGVKT----ENLLLAQPDCGEQ---ALSLVDTLIRS-GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQ 227 (271)
Q Consensus 160 ~~~----~~~~~g~~~----~~~~~~~~~~~~e---~~~~~~~l~~~-~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~ 227 (271)
... +++.+++++ +++.+.+..+.++ ++..+..+..+ .++++||||+++.+.. .++.+. + ....+
T Consensus 155 ~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~-~~~~~~-~--~~~~r 230 (322)
T 2i1q_A 155 RPERIMQMAEHAGIDGQTVLDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFR-NEYTGR-G--KLAER 230 (322)
T ss_dssp CHHHHHHHHHHHTCCHHHHHHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHH-HHCCCT-T--SHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHhcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHH-HHhcCC-c--cHHHH
Confidence 542 556678776 3566666667665 44455566666 6799999999998863 222211 1 12344
Q ss_pred HHHHHHHHHHHHHHHhhcCcEEEEEccccccc
Q 024152 228 ARLMSQALRKLSHSLSLSQTILIFINQVFSIN 259 (271)
Q Consensus 228 ~~~l~~~~r~L~~lake~~~~Vi~~sql~~~~ 259 (271)
++.+.+.++.|+.++++++++||+++|+....
T Consensus 231 ~~~~~~~~~~L~~la~~~~~~vi~~nq~~~~~ 262 (322)
T 2i1q_A 231 QQKLGRHMATLNKLADLFNCVVLVTNQVSAKP 262 (322)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEEECEECC-
T ss_pred HHHHHHHHHHHHHHHHHhCCEEEEECceeecC
Confidence 56788999999999999999999999998653
No 19
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.88 E-value=7e-22 Score=168.62 Aligned_cols=159 Identities=24% Similarity=0.387 Sum_probs=114.3
Q ss_pred CCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh------cCCeEEEEcCCCCCCH----HHHH
Q 024152 96 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR------QGGYCVFIDAEHALDP----SLAE 165 (271)
Q Consensus 96 ~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~------~~g~v~~~~~e~~~~~----~~~~ 165 (271)
.+++++||++.||.+++ ||+++|++++|+||||+|||||++++++++.. .++.++|++.+..+.. .+++
T Consensus 2 ~~~~i~tG~~~LD~~l~-ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~ 80 (243)
T 1n0w_A 2 EIIQITTGSKELDKLLQ-GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAE 80 (243)
T ss_dssp CCCEECCSCHHHHHHTT-TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHH
T ss_pred CceEecCCChHHHHhhc-CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHH
Confidence 45789999999999998 89999999999999999999999999997543 2567899999886443 3456
Q ss_pred HcCCcC----CcceecCCCCHHHHHHH---HHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHH
Q 024152 166 TIGVKT----ENLLLAQPDCGEQALSL---VDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKL 238 (271)
Q Consensus 166 ~~g~~~----~~~~~~~~~~~~e~~~~---~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L 238 (271)
.+++++ +++.+....+.++.... +.......++++++||+++.... ..+++. .....+++.+.+.++.|
T Consensus 81 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~-~~~~~~---~~~~~r~~~~~~~~~~l 156 (243)
T 1n0w_A 81 RYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYR-TDYSGR---GELSARQMHLARFLRML 156 (243)
T ss_dssp HTTCCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-----------CHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHhhCeEEEecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHH-HHhcCC---ccHHHHHHHHHHHHHHH
Confidence 678877 46666666666654433 44445567899999999998873 222211 11123344577788888
Q ss_pred HHHHhhcCcEEEEEccccccc
Q 024152 239 SHSLSLSQTILIFINQVFSIN 259 (271)
Q Consensus 239 ~~lake~~~~Vi~~sql~~~~ 259 (271)
+.++++.+++||+++|.....
T Consensus 157 ~~~~~~~~~tvi~~~h~~~~~ 177 (243)
T 1n0w_A 157 LRLADEFGVAVVITNQVVAQV 177 (243)
T ss_dssp HHHHHHHCCEEEEEC------
T ss_pred HHHHHHcCCEEEEEeeeeecC
Confidence 888999999999999987543
No 20
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=99.87 E-value=2.3e-22 Score=172.05 Aligned_cols=150 Identities=22% Similarity=0.296 Sum_probs=111.1
Q ss_pred CCCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh-cCCeEEEEcCCCCCCHHHH--HHcCCcC
Q 024152 95 RHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR-QGGYCVFIDAEHALDPSLA--ETIGVKT 171 (271)
Q Consensus 95 ~~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~-~~g~v~~~~~e~~~~~~~~--~~~g~~~ 171 (271)
.+++++|||+++||.+++ |||++|++++|+|+||+|||+|+++++.+.+. .+++|+|++.|++..+... ...+...
T Consensus 7 ~~i~ri~TGi~~LD~~l~-GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~~~~~~~~~~~~~~~~ 85 (251)
T 2zts_A 7 QPVRRVKSGIPGFDELIE-GGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDF 85 (251)
T ss_dssp -CCCEECCSCTTTGGGTT-TSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCH
T ss_pred CCCCeecCCcHHHHHhhc-CCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCCHHHHHHHHHHcCCCh
Confidence 378999999999999998 89999999999999999999999999988654 4668999999987654322 2223221
Q ss_pred C------cc------------------eecCCCCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHH
Q 024152 172 E------NL------------------LLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQ 227 (271)
Q Consensus 172 ~------~~------------------~~~~~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~ 227 (271)
+ ++ ......+.++++..++......+++++++|+++.+.... ..
T Consensus 86 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vviD~~~~l~~~~------~~------ 153 (251)
T 2zts_A 86 EKYEKEGKIAIVDGVSSVVGLPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRL------EE------ 153 (251)
T ss_dssp HHHHHTTSEEEEC-------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHS------SS------
T ss_pred HHHHhcCcchhhhhHHHHhhcccchhccccccccHHHHHHHHHHHHHhcCCcEEEEEcHHHHhhhc------cC------
Confidence 1 11 111223456777777777778899999999998775211 11
Q ss_pred HHHHHHHHHHHHHHHhhcCcEEEEEccccc
Q 024152 228 ARLMSQALRKLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 228 ~~~l~~~~r~L~~lake~~~~Vi~~sql~~ 257 (271)
.+.+.+.++.|+.+++++|++|++++|+..
T Consensus 154 ~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~ 183 (251)
T 2zts_A 154 ERKIREVLLKLNTILLEMGVTTILTTEAPD 183 (251)
T ss_dssp GGGHHHHHHHHHHHHHHHCCEEEEEECCC-
T ss_pred hHHHHHHHHHHHHHHHHcCCCeEEEEEEec
Confidence 123456778888899999999999999864
No 21
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.87 E-value=1.5e-21 Score=179.31 Aligned_cols=157 Identities=27% Similarity=0.489 Sum_probs=119.5
Q ss_pred CCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh------cCCeEEEEcCCCCCCH----HHHH
Q 024152 96 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR------QGGYCVFIDAEHALDP----SLAE 165 (271)
Q Consensus 96 ~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~------~~g~v~~~~~e~~~~~----~~~~ 165 (271)
...+++||++.||.+++ ||+++|++++|+||||+|||||+++++.+... .+++++||+.|..+.. .+++
T Consensus 156 ~~~~i~TG~~~LD~lLg-GGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~ 234 (400)
T 3lda_A 156 ELICLTTGSKNLDTLLG-GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQ 234 (400)
T ss_dssp TSCEECCSCHHHHHHTT-TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHH
T ss_pred cCCccccCChhHHHHhc-CCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHH
Confidence 46899999999999998 89999999999999999999999999876653 3467999999987664 3567
Q ss_pred HcCCcCC----cceecCCCCHHHH---HHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHH
Q 024152 166 TIGVKTE----NLLLAQPDCGEQA---LSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKL 238 (271)
Q Consensus 166 ~~g~~~~----~~~~~~~~~~~e~---~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L 238 (271)
.+|++++ ++.+....+.++. +..+..++...++++++||+++.+++ .+++++ | ....+++.+.++++.|
T Consensus 235 ~~gl~~~~vleni~~~~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~-~~~sg~-g--~l~~Rq~~l~~il~~L 310 (400)
T 3lda_A 235 RFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYR-TDFSGR-G--ELSARQMHLAKFMRAL 310 (400)
T ss_dssp HTTCCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC--------C--CHHHHHHHHHHHHHHH
T ss_pred HcCCChHhHhhcEEEeccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCc-hhhcCc-c--chHHHHHHHHHHHHHH
Confidence 7888776 5566666665543 34444555567899999999999874 444431 1 1234566778889999
Q ss_pred HHHHhhcCcEEEEEccccc
Q 024152 239 SHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 239 ~~lake~~~~Vi~~sql~~ 257 (271)
++++++++++||+++|+..
T Consensus 311 ~~lake~gitVIlv~Hv~~ 329 (400)
T 3lda_A 311 QRLADQFGVAVVVTNQVVA 329 (400)
T ss_dssp HHHHHHHCCEEEEEEEC--
T ss_pred HHHHHHcCCEEEEEEeecc
Confidence 9999999999999999954
No 22
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.85 E-value=3.9e-21 Score=164.22 Aligned_cols=146 Identities=23% Similarity=0.268 Sum_probs=109.6
Q ss_pred CccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCH--HHHHHcCCcCCc--
Q 024152 98 PVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--SLAETIGVKTEN-- 173 (271)
Q Consensus 98 ~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~--~~~~~~g~~~~~-- 173 (271)
.+++||++.||.+++ ||+++|++++|+|+||+|||||+++++...++.+++|+|++.++...+ .+...+|+++++
T Consensus 3 ~~i~tG~~~LD~~l~-gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~g~~~~~~~ 81 (247)
T 2dr3_A 3 RRVKTGIPGVDEILH-GGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEHPVQVRQNMAQFGWDVKPYE 81 (247)
T ss_dssp CEECCCCTTHHHHTT-TSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSCHHHHHHHHHTTTCCCHHHH
T ss_pred ccccCCchhHHHHcC-CCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHHHHHcCCCHHHHh
Confidence 579999999999998 899999999999999999999999999999888889999999876543 233446666532
Q ss_pred ----ceec-------------------CCCCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHH
Q 024152 174 ----LLLA-------------------QPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARL 230 (271)
Q Consensus 174 ----~~~~-------------------~~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~ 230 (271)
+.+. ...+.+++...+++...+.++++++||+++.+... ... .
T Consensus 82 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~~-------~~~-------~ 147 (247)
T 2dr3_A 82 EKGMFAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVLRQAIRDINAKRVVVDSVTTLYIN-------KPA-------M 147 (247)
T ss_dssp HHTSEEEEECSTTTTCC--CCCSCBCSCCSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTTT-------CGG-------G
T ss_pred hCCcEEEEecchhhcccccccccccccCccCHHHHHHHHHHHHHHhCCCEEEECCchHhhcC-------CHH-------H
Confidence 1111 12355677777777766678999999999988621 111 1
Q ss_pred HHHHHHHHHHHHhhcCcEEEEEcccccc
Q 024152 231 MSQALRKLSHSLSLSQTILIFINQVFSI 258 (271)
Q Consensus 231 l~~~~r~L~~lake~~~~Vi~~sql~~~ 258 (271)
..+.+..|++++++.|++|++++|....
T Consensus 148 ~~~~l~~l~~~~~~~~~~vi~~~h~~~~ 175 (247)
T 2dr3_A 148 ARSIILQLKRVLAGTGCTSIFVSQVSVG 175 (247)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEECC--
T ss_pred HHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 1234556667788999999999998864
No 23
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.84 E-value=2.4e-20 Score=168.80 Aligned_cols=170 Identities=25% Similarity=0.379 Sum_probs=119.7
Q ss_pred CCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHh--hc----CCeEEEEcCCCCCCHH----HHH
Q 024152 96 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQ--RQ----GGYCVFIDAEHALDPS----LAE 165 (271)
Q Consensus 96 ~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~--~~----~g~v~~~~~e~~~~~~----~~~ 165 (271)
....++||++.||.+++ ||+++|++++|+|+||+|||||+++++++++ +. +|.|+|++++..+.+. +.+
T Consensus 109 ~~~~isTG~~~LD~lL~-ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q 187 (349)
T 1pzn_A 109 TIGRISTGSKSLDKLLG-GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQ 187 (349)
T ss_dssp TCCEECCSCHHHHHHHT-SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHH
T ss_pred cCCeecCCCHHHHHHhc-CCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHH
Confidence 46889999999999998 9999999999999999999999999999984 33 3688999998875432 344
Q ss_pred HcCCcC----CcceecCCCCH---HHHHHHHHHHHhc-----CCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHH
Q 024152 166 TIGVKT----ENLLLAQPDCG---EQALSLVDTLIRS-----GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQ 233 (271)
Q Consensus 166 ~~g~~~----~~~~~~~~~~~---~e~~~~~~~l~~~-----~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~ 233 (271)
..++.. +++.+....+. .+.+..++.+... .+++++++|+++..+. .++.+ ......+++.+.+
T Consensus 188 ~~~~~~~~v~~ni~~~~~~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld-~~~~~---~~~~~~r~~~~~~ 263 (349)
T 1pzn_A 188 NRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFR-SEYIG---RGALAERQQKLAK 263 (349)
T ss_dssp TTTCCHHHHGGGEEEEECCSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHH-HHCCS---TTTHHHHHHHHHH
T ss_pred HcCCCHHHHhhCEEEEecCChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhh-hhhcc---cccHHHHHHHHHH
Confidence 445443 34444443332 3455566666655 6899999999998762 22211 1122234456778
Q ss_pred HHHHHHHHHhhcCcEEEEEccccccc-------chhhhhhhccC
Q 024152 234 ALRKLSHSLSLSQTILIFINQVFSIN-------LNKIIDESSGH 270 (271)
Q Consensus 234 ~~r~L~~lake~~~~Vi~~sql~~~~-------~~~~l~~s~~~ 270 (271)
.++.|++++++.+++||+++|....+ ..+..+..|+|
T Consensus 264 ~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~ 307 (349)
T 1pzn_A 264 HLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAH 307 (349)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECC---------------CCCCCT
T ss_pred HHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEee
Confidence 88888888999999999999988643 23455666766
No 24
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.83 E-value=1.8e-20 Score=157.49 Aligned_cols=146 Identities=34% Similarity=0.466 Sum_probs=106.4
Q ss_pred ccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCH----HHHHHcCCcCC--
Q 024152 99 VVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP----SLAETIGVKTE-- 172 (271)
Q Consensus 99 ~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~----~~~~~~g~~~~-- 172 (271)
.++||++.||.+++ ||+++|++++|+|+||+|||||+++++. ..+++|+|++.+..... .+....++.++
T Consensus 1 ri~tG~~~LD~~l~-Ggi~~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (220)
T 2cvh_A 1 MLSTGTKSLDSLLG-GGFAPGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDTEGGFSPERLVQMAETRGLNPEEA 76 (220)
T ss_dssp CBCCSCHHHHHHTT-SSBCTTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEESSCCCCHHHHHHHHHTTTCCHHHH
T ss_pred CcccCcHHHHHhhc-CCCcCCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEECCCCCCHHHHHHHHHhcCCChHHH
Confidence 37899999999998 8999999999999999999999999999 55678999998874443 12233444332
Q ss_pred --cceecCCCCHH---HHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCc
Q 024152 173 --NLLLAQPDCGE---QALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQT 247 (271)
Q Consensus 173 --~~~~~~~~~~~---e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~ 247 (271)
++.+....+.+ +.++.++.+..+ ++++++||+++....... . ...+.+.+.+.++.|+.++++.++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~lliiD~~~~~l~~~~------~--~~~~~~~~~~~~~~L~~l~~~~~~ 147 (220)
T 2cvh_A 77 LSRFILFTPSDFKEQRRVIGSLKKTVDS-NFALVVVDSITAHYRAEE------N--RSGLIAELSRQLQVLLWIARKHNI 147 (220)
T ss_dssp HHHEEEECCTTTSHHHHHHHHHHHHCCT-TEEEEEEECCCCCTTGGG------G--SSTTHHHHHHHHHHHHHHHHHHTC
T ss_pred hhcEEEEecCCHHHHHHHHHHHHHHhhc-CCCEEEEcCcHHHhhhcC------c--hHHHHHHHHHHHHHHHHHHHHcCC
Confidence 23444444433 345556665544 799999999997753110 0 002235677788888888999999
Q ss_pred EEEEEccccc
Q 024152 248 ILIFINQVFS 257 (271)
Q Consensus 248 ~Vi~~sql~~ 257 (271)
+|++++|...
T Consensus 148 ~vi~~~h~~~ 157 (220)
T 2cvh_A 148 PVIVINQVHF 157 (220)
T ss_dssp CEEEEECSSS
T ss_pred EEEEEeeEEE
Confidence 9999999875
No 25
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.83 E-value=6.7e-20 Score=154.94 Aligned_cols=158 Identities=26% Similarity=0.414 Sum_probs=112.7
Q ss_pred CCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh------cCCeEEEEcCCCCCCH----HHHH
Q 024152 96 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR------QGGYCVFIDAEHALDP----SLAE 165 (271)
Q Consensus 96 ~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~------~~g~v~~~~~e~~~~~----~~~~ 165 (271)
.+++++||++.||.+++ ||+++|++++|+||||||||||++++++...+ ..+.++|++.+..... .+.+
T Consensus 3 ~~~~i~tG~~~LD~~l~-ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~ 81 (231)
T 4a74_A 3 TIGRISTGSKSLDKLLG-GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQ 81 (231)
T ss_dssp CCCEECCSCHHHHHHTT-SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHH
T ss_pred cCCccCCCChhHHhHhc-CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHH
Confidence 67889999999999998 89999999999999999999999999998775 3566899998876543 3455
Q ss_pred HcCCcCC----cceecCCCCHHH---HHHHHHHHHh-----cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHH
Q 024152 166 TIGVKTE----NLLLAQPDCGEQ---ALSLVDTLIR-----SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQ 233 (271)
Q Consensus 166 ~~g~~~~----~~~~~~~~~~~e---~~~~~~~l~~-----~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~ 233 (271)
..++.++ ++.+.......+ ....+..+.. ..+++++++|+++...+ .++++. .....+++.+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~-~~~~~~---~~~~~r~~~~~~ 157 (231)
T 4a74_A 82 NRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFR-SEYIGR---GALAERQQKLAK 157 (231)
T ss_dssp HTTSCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHH-HHSCST---THHHHHHHHHHH
T ss_pred HcCCCHHHHhhcEEEEecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhc-cccCCC---cchhHHHHHHHH
Confidence 5666653 444444444332 2233334444 56899999999987753 222221 111233444567
Q ss_pred HHHHHHHHHhhcCcEEEEEcccccc
Q 024152 234 ALRKLSHSLSLSQTILIFINQVFSI 258 (271)
Q Consensus 234 ~~r~L~~lake~~~~Vi~~sql~~~ 258 (271)
.++.|++++++.+++||+++|....
T Consensus 158 ~~~~l~~~~~~~g~tvi~vtH~~~~ 182 (231)
T 4a74_A 158 HLADLHRLANLYDIAVFVTNQVQAN 182 (231)
T ss_dssp HHHHHHHHHHHHTCEEEEEEECC--
T ss_pred HHHHHHHHHHHCCCeEEEEeecccC
Confidence 7778888899999999999996654
No 26
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.82 E-value=6.2e-20 Score=161.97 Aligned_cols=150 Identities=13% Similarity=0.166 Sum_probs=106.9
Q ss_pred CCCcccc-CcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCC-eEEEEcCCCCCCHHHHH----HcCC
Q 024152 96 HVPVVST-GSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGG-YCVFIDAEHALDPSLAE----TIGV 169 (271)
Q Consensus 96 ~~~~i~T-g~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g-~v~~~~~e~~~~~~~~~----~~g~ 169 (271)
...+++| |++.||.+++ |+++|++++|+|+||+|||||++++++++++..| +|+|++.|+...+...+ ..++
T Consensus 13 ~~~~i~t~g~~~Ld~i~~--~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~ 90 (296)
T 1cr0_A 13 ESVGLLFSGCTGINDKTL--GARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRV 90 (296)
T ss_dssp CCCCBCCCSCTTHHHHHC--SBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTTC
T ss_pred CcCCcccCCHHHHHHHhc--CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHcCC
Confidence 5789999 9999999997 9999999999999999999999999999998855 89999988753221111 1122
Q ss_pred cC--------------------------CcceecC---CCCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccc
Q 024152 170 KT--------------------------ENLLLAQ---PDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMG 220 (271)
Q Consensus 170 ~~--------------------------~~~~~~~---~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g 220 (271)
.. ..+.+.. ..+..++.+.++......+++++++|+++.+....
T Consensus 91 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~l~~~~~a~~~~~~p~llilDept~~~~~~------- 163 (296)
T 1cr0_A 91 RLRQSDSLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSAS------- 163 (296)
T ss_dssp CGGGCHHHHHHHHHHTHHHHHHHHHHSSSCEEEECCCCSCCHHHHHHHHHHHHHTTCCSEEEEEEEC-------------
T ss_pred ChhhccccccCCCCHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCCC-------
Confidence 11 1122222 25677887777765556789999999999876310
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcccc
Q 024152 221 DAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVF 256 (271)
Q Consensus 221 ~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~ 256 (271)
......+.+..+.+.|+.++++.++|||+++|..
T Consensus 164 --~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~ 197 (296)
T 1cr0_A 164 --GESDERKMIDNLMTKLKGFAKSTGVVLVVICHLK 197 (296)
T ss_dssp -------CHHHHHHHHHHHHHHHHHCCEEEEEEECC
T ss_pred --CCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecC
Confidence 0001113455677778888999999999999995
No 27
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.82 E-value=1.9e-19 Score=152.07 Aligned_cols=144 Identities=24% Similarity=0.336 Sum_probs=106.3
Q ss_pred CccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCH--HHHHHcCCcCCcce
Q 024152 98 PVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--SLAETIGVKTENLL 175 (271)
Q Consensus 98 ~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~--~~~~~~g~~~~~~~ 175 (271)
.+++||++.||.+++ ||+++|++++|+|+||+|||||++++++...+.+++|+|++.+..... .....+++.++.+.
T Consensus 3 ~~i~tg~~~Ld~~~~-ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (235)
T 2w0m_A 3 SRLSTGILDFDKLIQ-GGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYI 81 (235)
T ss_dssp CEECCSCHHHHGGGT-TSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGB
T ss_pred ccccCCchHHHHHhc-CCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHHh
Confidence 478999999999997 799999999999999999999999999999988889999998775433 22335666655321
Q ss_pred -----ec-------------CCCCHHHHHHHHHHHHhcCCcc--EEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHH
Q 024152 176 -----LA-------------QPDCGEQALSLVDTLIRSGSVD--VVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQAL 235 (271)
Q Consensus 176 -----~~-------------~~~~~~e~~~~~~~l~~~~~~~--lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~ 235 (271)
.. ...+..++...+.......+++ ++++|+++.+...+. . ...+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~-----~---------~~~~~~ 147 (235)
T 2w0m_A 82 EKKLIIIDALMKEKEDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKP-----A---------MARKIS 147 (235)
T ss_dssp TTTEEEEECCC----CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCG-----G---------GHHHHH
T ss_pred hCCEEEEeccccccCceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCH-----H---------HHHHHH
Confidence 11 1225667666666655556788 999999998753110 0 123455
Q ss_pred HHHHHHHhhcCcEEEEEcccc
Q 024152 236 RKLSHSLSLSQTILIFINQVF 256 (271)
Q Consensus 236 r~L~~lake~~~~Vi~~sql~ 256 (271)
+.|+.++++.+++|++++|..
T Consensus 148 ~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 148 YYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp HHHHHHHHHTTEEEEEEEC--
T ss_pred HHHHHHHHhCCCeEEEEeccC
Confidence 666667889999999999987
No 28
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.76 E-value=1.5e-18 Score=148.34 Aligned_cols=150 Identities=21% Similarity=0.263 Sum_probs=100.6
Q ss_pred CCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHh-hcCCeEEEEcCCCCCCH--HHHHHcCCcCC
Q 024152 96 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQ-RQGGYCVFIDAEHALDP--SLAETIGVKTE 172 (271)
Q Consensus 96 ~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~-~~~g~v~~~~~e~~~~~--~~~~~~g~~~~ 172 (271)
.+.+++||++.||.+++ ||+++|++++|+||||||||||+++++.... ..++.++|++.+..... ...+.+++.++
T Consensus 8 ~~~~i~tg~~~lD~~l~-Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 86 (251)
T 2ehv_A 8 PVRRVKSGIPGFDELIE-GGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFE 86 (251)
T ss_dssp CCCEECCSCTTTGGGTT-TSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHH
T ss_pred ccceeecCCHhHHHHhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChH
Confidence 67889999999999998 8999999999999999999999999997655 55556788887655432 23455676655
Q ss_pred cc------eec------------------CCCCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHH
Q 024152 173 NL------LLA------------------QPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQA 228 (271)
Q Consensus 173 ~~------~~~------------------~~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~ 228 (271)
.. .+. ......++...+.......+++++++|+++...+... + .. ..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~--d---~~---~~- 157 (251)
T 2ehv_A 87 KYEKEGKIAIVDGVSSVVGLPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLE--E---ER---KI- 157 (251)
T ss_dssp HHHHTTSEEEEC-------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSS--S---GG---GH-
T ss_pred HHhhcCCEEEEEccccccccccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcC--C---HH---HH-
Confidence 42 111 1122344444444455567899999999987753100 0 00 11
Q ss_pred HHHHHHHHHHHHHHhhcCcEEEEEcccccc
Q 024152 229 RLMSQALRKLSHSLSLSQTILIFINQVFSI 258 (271)
Q Consensus 229 ~~l~~~~r~L~~lake~~~~Vi~~sql~~~ 258 (271)
.+.+..+.+.+++.|+|||+++|....
T Consensus 158 ---~~~l~~l~~~l~~~g~tii~vtH~~~~ 184 (251)
T 2ehv_A 158 ---REVLLKLNTILLEMGVTTILTTEAPDP 184 (251)
T ss_dssp ---HHHHHHHHHHHHHHCCEEEEEECCC--
T ss_pred ---HHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 122333334446779999999998654
No 29
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.73 E-value=6.8e-18 Score=147.77 Aligned_cols=146 Identities=17% Similarity=0.254 Sum_probs=102.1
Q ss_pred CCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhc----------CCeEEEEcCCCCCCHH--HH
Q 024152 97 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ----------GGYCVFIDAEHALDPS--LA 164 (271)
Q Consensus 97 ~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~----------~g~v~~~~~e~~~~~~--~~ 164 (271)
.+.++||++.||.+++ |+++|++++|+|+||+|||||++++++.++.. .+.|+|++.|+..... ..
T Consensus 10 ~~~i~tg~~~ld~~lg--gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~~~~~~r~ 87 (279)
T 1nlf_A 10 LEAFAAAPPPLDYVLP--NMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHRL 87 (279)
T ss_dssp HHHHHSCCCCCCEEET--TEETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCHHHHHHHH
T ss_pred HHHhcCCCCChheeEC--CccCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCHHHHHHHH
Confidence 3568999999999997 99999999999999999999999999977752 4678999988765432 23
Q ss_pred HHcCCcCC---------cceecCC-------CCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHH
Q 024152 165 ETIGVKTE---------NLLLAQP-------DCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQA 228 (271)
Q Consensus 165 ~~~g~~~~---------~~~~~~~-------~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~ 228 (271)
..++...+ .+.+.+. .+..+ +..++.+.. ++++++||+++.+.+.++ .. .
T Consensus 88 ~~~g~~~~~~~~~~~~~~l~l~~~~~~~~~~ls~g~-~~~i~~l~~--~~~livlDe~~~~~~~d~-----~~------~ 153 (279)
T 1nlf_A 88 HALGAHLSAEERQAVADGLLIQPLIGSLPNIMAPEW-FDGLKRAAE--GRRLMVLDTLRRFHIEEE-----NA------S 153 (279)
T ss_dssp HHHHTTSCHHHHHHHHHHEEECCCTTSCCCTTSHHH-HHHHHHHHT--TCSEEEEECGGGGCCSCT-----TC------H
T ss_pred HHHHhhcChhhhhhccCceEEeecCCCCcccCCHHH-HHHHHHhcC--CCCEEEECCHHHhcCCCc-----Cc------h
Confidence 33444322 2222211 22222 445555543 589999999998764211 11 1
Q ss_pred HHHHHHHHHHHHHHhhcCcEEEEEcccccc
Q 024152 229 RLMSQALRKLSHSLSLSQTILIFINQVFSI 258 (271)
Q Consensus 229 ~~l~~~~r~L~~lake~~~~Vi~~sql~~~ 258 (271)
+.+..+++.|+.++++.+++||+++|....
T Consensus 154 ~~~~~~~~~L~~l~~~~g~tvi~i~H~~~~ 183 (279)
T 1nlf_A 154 GPMAQVIGRMEAIAADTGCSIVFLHHASKG 183 (279)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEEEEC---
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEecCCCc
Confidence 345566778888889999999999998854
No 30
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.59 E-value=1.2e-14 Score=138.00 Aligned_cols=147 Identities=21% Similarity=0.231 Sum_probs=103.5
Q ss_pred CCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHH--HHHcCCcCCc
Q 024152 96 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSL--AETIGVKTEN 173 (271)
Q Consensus 96 ~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~--~~~~g~~~~~ 173 (271)
.+..++||+++||.+++ ||+++|++++|.|+||+|||||++++++...+.+++++|+..+....... +..++++.+.
T Consensus 259 ~~~~l~~g~~~ld~vL~-g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~ 337 (525)
T 1tf7_A 259 SNVRVSSGVVRLDEMCG-GGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEE 337 (525)
T ss_dssp CCCEECCSCHHHHHHTT-SSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHH
T ss_pred ccceeecChHHHHHHhC-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHH
Confidence 56789999999999998 89999999999999999999999999999988766788998876543321 2234443211
Q ss_pred ------ceec----CCCCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHh
Q 024152 174 ------LLLA----QPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLS 243 (271)
Q Consensus 174 ------~~~~----~~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lak 243 (271)
+.+. ...+..+....+.......+++++++|+++.+... . ++ . ...+.+..+.+.++
T Consensus 338 ~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilDp~~~Ld~~--~---~~-----~---~~~~~i~~ll~~l~ 404 (525)
T 1tf7_A 338 MERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDSLSALARG--V---SN-----N---AFRQFVIGVTGYAK 404 (525)
T ss_dssp HHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEECHHHHTSS--S---CH-----H---HHHHHHHHHHHHHH
T ss_pred HHhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEcChHHHHhh--C---Ch-----H---HHHHHHHHHHHHHH
Confidence 1111 11355565555444444578999999988887631 1 11 1 12334444555567
Q ss_pred hcCcEEEEEcccc
Q 024152 244 LSQTILIFINQVF 256 (271)
Q Consensus 244 e~~~~Vi~~sql~ 256 (271)
+.|++||+++|..
T Consensus 405 ~~g~tvilvsh~~ 417 (525)
T 1tf7_A 405 QEEITGLFTNTSD 417 (525)
T ss_dssp HTTCEEEEEEECS
T ss_pred hCCCEEEEEECcc
Confidence 7899999999986
No 31
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.51 E-value=4.1e-15 Score=135.33 Aligned_cols=139 Identities=16% Similarity=0.171 Sum_probs=96.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC-CHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-DPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 193 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~-~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~ 193 (271)
-+++|++++|.||||||||||++.|++...+++|.|. ++++... .....+.+|+.+|+..+++.+++.+++.+..+..
T Consensus 25 ~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~-i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~ 103 (381)
T 3rlf_A 25 DIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF-IGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA 103 (381)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEE-ETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHT
T ss_pred EECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEE-ECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHc
Confidence 5779999999999999999999999999999999854 4443221 1223356899999999998899999887654321
Q ss_pred hc----------CCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHH
Q 024152 194 RS----------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSL 242 (271)
Q Consensus 194 ~~----------~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~la 242 (271)
.. .-++.+-++.+...+ ..+++ .|++||+..++++. ++...|+++.
T Consensus 104 ~~~~~~~~~~v~~~l~~~~L~~~~~r~-p~~LS--GGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~ 180 (381)
T 3rlf_A 104 GAKKEVINQRVNQVAEVLQLAHLLDRK-PKALS--GGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLH 180 (381)
T ss_dssp TCCHHHHHHHHHHHHHHTTCGGGTTCC-GGGSC--HHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCchhhcCC-hhHCC--HHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHH
Confidence 10 001111122222222 13344 38999999999983 3444666677
Q ss_pred hhcCcEEEEEccccc
Q 024152 243 SLSQTILIFINQVFS 257 (271)
Q Consensus 243 ke~~~~Vi~~sql~~ 257 (271)
++.|+|+|+++|-..
T Consensus 181 ~~~g~tii~vTHd~~ 195 (381)
T 3rlf_A 181 KRLGRTMIYVTHDQV 195 (381)
T ss_dssp HHHCCEEEEECSCHH
T ss_pred HhCCCEEEEEECCHH
Confidence 888999999999753
No 32
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.49 E-value=9.3e-14 Score=131.94 Aligned_cols=149 Identities=17% Similarity=0.196 Sum_probs=98.4
Q ss_pred CCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHH--HHHHhhcCCeEEEEcCCCCCCH--HHHHHcCCcC
Q 024152 96 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHV--IAEAQRQGGYCVFIDAEHALDP--SLAETIGVKT 171 (271)
Q Consensus 96 ~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~i--a~~~~~~~g~v~~~~~e~~~~~--~~~~~~g~~~ 171 (271)
.+..++||++.||.+.. ||+++|++++|+|+||||||||++++ ++...+..| .+|++.+..... ..++.+|+++
T Consensus 17 ~~~~~~~g~~~Ld~i~~-G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g-~i~v~g~~~~~~~~~~~~~~g~~~ 94 (525)
T 1tf7_A 17 AIAKMRTMIEGFDDISH-GGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEP-GVFVTFEETPQDIIKNARSFGWDL 94 (525)
T ss_dssp SCCEECCCCTTHHHHTT-SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCC-EEEEESSSCHHHHHHHHGGGTCCH
T ss_pred ccccccCCchhHHHhcC-CCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCC-EEEEEEeCCHHHHHHHHHHcCCCh
Confidence 46789999999999987 79999999999999999999999994 566666666 477776653221 3456688887
Q ss_pred Ccce------ecCC------------CCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHH
Q 024152 172 ENLL------LAQP------------DCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQ 233 (271)
Q Consensus 172 ~~~~------~~~~------------~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~ 233 (271)
|++. .... ....+.+......+...+++++++|++..+.+...+ + ....+.+.+
T Consensus 95 q~~~~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~~l-----D---~~~~~~l~~ 166 (525)
T 1tf7_A 95 AKLVDEGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDA-----S---SVVRRELFR 166 (525)
T ss_dssp HHHHHTTSEEEEECCCCSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCC-----H---HHHHHHHHH
T ss_pred HHhhccCcEEEEecCcccchhhhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHhcCC-----H---HHHHHHHHH
Confidence 7532 1110 012233333333344567899999999887642110 0 111223434
Q ss_pred HHHHHHHHHhhcCcEEEEEcccccc
Q 024152 234 ALRKLSHSLSLSQTILIFINQVFSI 258 (271)
Q Consensus 234 ~~r~L~~lake~~~~Vi~~sql~~~ 258 (271)
.++.| ++.|+|||+++|....
T Consensus 167 ll~~l----~~~g~tvl~itH~~~~ 187 (525)
T 1tf7_A 167 LVARL----KQIGATTVMTTERIEE 187 (525)
T ss_dssp HHHHH----HHHTCEEEEEEECSSS
T ss_pred HHHHH----HHCCCEEEEEecCCCC
Confidence 44444 4469999999998754
No 33
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.49 E-value=4e-15 Score=134.47 Aligned_cols=139 Identities=18% Similarity=0.182 Sum_probs=95.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC-----CCHHHHHHcCCcCCcceecCCCCHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA-----LDPSLAETIGVKTENLLLAQPDCGEQALSLV 189 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~-----~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~ 189 (271)
-+++|++++|.||||||||||++.|++...+++|.|.+ +++.. ......+.+|+.+|+..+++.+++.+++.+.
T Consensus 26 ~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i-~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~ 104 (359)
T 3fvq_A 26 SLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISL-SGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYG 104 (359)
T ss_dssp EECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEE-TTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTT
T ss_pred EEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEE-CCEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHH
Confidence 57799999999999999999999999999999888554 43221 1123456799999999888889999887653
Q ss_pred HHHHh----------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHH
Q 024152 190 DTLIR----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKL 238 (271)
Q Consensus 190 ~~l~~----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L 238 (271)
..... ..-++.+-++.+...+ ..++++ |++||+..++++. ++...|
T Consensus 105 l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~-~~~LSG--Gq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l 181 (359)
T 3fvq_A 105 LGNGKGRTAQERQRIEAMLELTGISELAGRY-PHELSG--GQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDM 181 (359)
T ss_dssp STTSSCCSHHHHHHHHHHHHHHTCGGGTTSC-GGGSCH--HHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHH
T ss_pred HHHcCCChHHHHHHHHHHHHHcCCchHhcCC-hhhCCH--HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 21100 0001111122222222 133443 8999999999982 233357
Q ss_pred HHHHhhcCcEEEEEccccc
Q 024152 239 SHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 239 ~~lake~~~~Vi~~sql~~ 257 (271)
+++.++.++|||+++|-..
T Consensus 182 ~~~~~~~g~tvi~vTHd~~ 200 (359)
T 3fvq_A 182 IAALRANGKSAVFVSHDRE 200 (359)
T ss_dssp HHHHHHTTCEEEEECCCHH
T ss_pred HHHHHhCCCEEEEEeCCHH
Confidence 7778889999999999753
No 34
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.49 E-value=1.2e-14 Score=131.58 Aligned_cols=140 Identities=17% Similarity=0.176 Sum_probs=96.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC-CC-H---HHHHHcCCcCCcceecCCCCHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA-LD-P---SLAETIGVKTENLLLAQPDCGEQALSLV 189 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~-~~-~---~~~~~~g~~~~~~~~~~~~~~~e~~~~~ 189 (271)
-+++|++++|.||||||||||++++++...+++|.|.|.+.+-. .. . .+++.+|+.+|+..+++..++.+++.+.
T Consensus 50 ~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~ 129 (366)
T 3tui_C 50 HVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALP 129 (366)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHH
T ss_pred EEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHH
Confidence 67799999999999999999999999999999998555432221 11 1 2356799999999888888999888765
Q ss_pred HHHHhc----------CCccEEEEcchhhhcCCCccCCccchhhHHHHHHHH---------------------HHHHHHH
Q 024152 190 DTLIRS----------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLM---------------------SQALRKL 238 (271)
Q Consensus 190 ~~l~~~----------~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l---------------------~~~~r~L 238 (271)
...... .-++.+-++.....+ ..+++ .|++||+..++++ ..+...|
T Consensus 130 ~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~-~~~LS--GGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL 206 (366)
T 3tui_C 130 LELDNTPKDEVKRRVTELLSLVGLGDKHDSY-PSNLS--GGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELL 206 (366)
T ss_dssp HHHSCCCHHHHHHHHHHHHHHHTCGGGTTCC-TTTSC--HHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCCchHhcCC-hhhCC--HHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHH
Confidence 432100 001111122222222 13344 3899999999987 3455566
Q ss_pred HHHHhhcCcEEEEEccccc
Q 024152 239 SHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 239 ~~lake~~~~Vi~~sql~~ 257 (271)
+++.++.|+|||+++|-..
T Consensus 207 ~~l~~~~g~Tii~vTHdl~ 225 (366)
T 3tui_C 207 KDINRRLGLTILLITHEMD 225 (366)
T ss_dssp HHHHHHSCCEEEEEESCHH
T ss_pred HHHHHhCCCEEEEEecCHH
Confidence 6677788999999999763
No 35
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=99.48 E-value=1.3e-14 Score=128.62 Aligned_cols=130 Identities=15% Similarity=0.062 Sum_probs=91.3
Q ss_pred CccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcC--CCCCCHHHHHHcCCcCCcce
Q 024152 98 PVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA--EHALDPSLAETIGVKTENLL 175 (271)
Q Consensus 98 ~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~--e~~~~~~~~~~~g~~~~~~~ 175 (271)
..++||++.||.+++ |+++|.+++|.||||+|||+|+++++.. .+++|+|++. ++... .
T Consensus 104 ~~i~TGi~~LD~lLG--Gi~~gsviLI~GpPGsGKTtLAlqlA~~---~G~~VlyIs~~~eE~v~----------~---- 164 (331)
T 2vhj_A 104 GELVGCSPVVAEFGG--HRYASGMVIVTGKGNSGKTPLVHALGEA---LGGKDKYATVRFGEPLS----------G---- 164 (331)
T ss_dssp TTCCSBCCEEEEETT--EEEESEEEEEECSCSSSHHHHHHHHHHH---HHTTSCCEEEEBSCSST----------T----
T ss_pred hccccCcHHHHHHhC--CCCCCcEEEEEcCCCCCHHHHHHHHHHh---CCCCEEEEEecchhhhh----------h----
Confidence 347899999999995 9999999999999999999999999886 4556788887 33211 0
Q ss_pred ecCCCCHHHHHHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccc
Q 024152 176 LAQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQV 255 (271)
Q Consensus 176 ~~~~~~~~e~~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql 255 (271)
+. .+.++.+..+.....+.+ +++||+++.+.+...-...+| ...+.+.+.++.|..++++.+++++++++.
T Consensus 165 -~~-~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~~~~~s~~G-----~v~~~lrqlL~~L~~~~k~~gvtVIlttnp 235 (331)
T 2vhj_A 165 -YN-TDFNVFVDDIARAMLQHR--VIVIDSLKNVIGAAGGNTTSG-----GISRGAFDLLSDIGAMAASRGCVVIASLNP 235 (331)
T ss_dssp -CB-CCHHHHHHHHHHHHHHCS--EEEEECCTTTC----------------CCHHHHHHHHHHHHHHHHHTCEEEEECCC
T ss_pred -hh-cCHHHHHHHHHHHHhhCC--EEEEecccccccccccccccc-----hHHHHHHHHHHHHHHHHhhCCCEEEEEeCC
Confidence 01 456666665555554444 999999998864221101111 223557788888888899999999987653
No 36
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.48 E-value=2.5e-14 Score=128.97 Aligned_cols=138 Identities=15% Similarity=0.120 Sum_probs=95.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC-CHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-DPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 193 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~-~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~ 193 (271)
-+++|++++|.||||||||||++.|++...+++|.|. ++..... .+...+.+++.+|+..+++.+++.+++.+.....
T Consensus 22 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~-~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~ 100 (348)
T 3d31_A 22 KVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRIL-LDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMK 100 (348)
T ss_dssp EECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEE-ETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHH
T ss_pred EEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEE-ECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHc
Confidence 5779999999999999999999999999999988855 4443221 2234567999999998888899999988754432
Q ss_pred hcCC-------ccEEEEcchhhhcCCCccCCccchhhHHHHHHHH---------------------HHHHHHHHHHHhhc
Q 024152 194 RSGS-------VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLM---------------------SQALRKLSHSLSLS 245 (271)
Q Consensus 194 ~~~~-------~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l---------------------~~~~r~L~~lake~ 245 (271)
.... ++.+-++.+.... ..+++ .|++||...++++ ..+...|+++.++.
T Consensus 101 ~~~~~~~v~~~l~~~~L~~~~~~~-~~~LS--gGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~ 177 (348)
T 3d31_A 101 KIKDPKRVLDTARDLKIEHLLDRN-PLTLS--GGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKN 177 (348)
T ss_dssp CCCCHHHHHHHHHHTTCTTTTTSC-GGGSC--HHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHcCCchHhcCC-hhhCC--HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhc
Confidence 1110 0011111111111 12233 4899999999987 23445666667788
Q ss_pred CcEEEEEcccc
Q 024152 246 QTILIFINQVF 256 (271)
Q Consensus 246 ~~~Vi~~sql~ 256 (271)
++|+|+++|-.
T Consensus 178 g~tii~vTHd~ 188 (348)
T 3d31_A 178 KLTVLHITHDQ 188 (348)
T ss_dssp TCEEEEEESCH
T ss_pred CCEEEEEeCCH
Confidence 99999999975
No 37
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.48 E-value=7.8e-14 Score=119.26 Aligned_cols=140 Identities=16% Similarity=0.214 Sum_probs=92.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC-CCH-H----HHHHcCCcCCcceecCCCCHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA-LDP-S----LAETIGVKTENLLLAQPDCGEQALSL 188 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~-~~~-~----~~~~~g~~~~~~~~~~~~~~~e~~~~ 188 (271)
-+++|++++|+||||||||||++.+++...+..|.|.+.+.+.. ... . +.+.+++.+|+..+++..++.+++.+
T Consensus 27 ~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~ 106 (235)
T 3tif_A 27 NIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVEL 106 (235)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHH
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHH
Confidence 57799999999999999999999999999999998554432211 111 1 23469999999888888899888765
Q ss_pred HHHHHhcCC-------------ccEEEEcc-hhhhcCCCccCCccchhhHHHHHHHH---------------------HH
Q 024152 189 VDTLIRSGS-------------VDVVVVDS-VAALVPKGELDGEMGDAHMAMQARLM---------------------SQ 233 (271)
Q Consensus 189 ~~~l~~~~~-------------~~lvvID~-l~~~~~~~~l~~~~g~~~~~~~~~~l---------------------~~ 233 (271)
......... ++.+-++. +.... ..+++ .|++||...++++ ..
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~LS--gGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~ 183 (235)
T 3tif_A 107 PLIFKYRGAMSGEERRKRALECLKMAELEERFANHK-PNQLS--GGQQQRVAIARALANNPPIILADQPTWALDSKTGEK 183 (235)
T ss_dssp HHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCC-GGGSC--HHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHH
T ss_pred HHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCC-hhhCC--HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 432110000 00000111 10111 12333 4899999999998 23
Q ss_pred HHHHHHHHHhhcCcEEEEEccccc
Q 024152 234 ALRKLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 234 ~~r~L~~lake~~~~Vi~~sql~~ 257 (271)
+...|+++.++.++|||+++|-..
T Consensus 184 i~~~l~~l~~~~g~tvi~vtHd~~ 207 (235)
T 3tif_A 184 IMQLLKKLNEEDGKTVVVVTHDIN 207 (235)
T ss_dssp HHHHHHHHHHHHCCEEEEECSCHH
T ss_pred HHHHHHHHHHHcCCEEEEEcCCHH
Confidence 444556666677999999999753
No 38
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.46 E-value=1.1e-14 Score=131.56 Aligned_cols=139 Identities=18% Similarity=0.171 Sum_probs=95.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC-CHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-DPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 193 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~-~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~ 193 (271)
-+++|++++|.||||||||||++.|++...+++|.|.+ +.+... .....+.+++.+|+..+++.+++.+++.+..+..
T Consensus 37 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i-~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~ 115 (355)
T 1z47_A 37 QIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWI-GGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREK 115 (355)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEE-TTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHT
T ss_pred EECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEE-CCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHc
Confidence 56799999999999999999999999999999888554 433221 1223457899999998888899999887653321
Q ss_pred hcC----------CccEEEEcchhhhcCCCccCCccchhhHHHHHHHH---------------------HHHHHHHHHHH
Q 024152 194 RSG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLM---------------------SQALRKLSHSL 242 (271)
Q Consensus 194 ~~~----------~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l---------------------~~~~r~L~~la 242 (271)
... -++.+-++.+.... ..+++ .|++||+..++++ ..+...|+++.
T Consensus 116 ~~~~~~~~~~v~~~l~~~gL~~~~~r~-~~~LS--GGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~ 192 (355)
T 1z47_A 116 RVPKDEMDARVRELLRFMRLESYANRF-PHELS--GGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVH 192 (355)
T ss_dssp TCCHHHHHHHHHHHHHHTTCGGGTTSC-GGGSC--HHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCChhHhcCC-cccCC--HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 000 01111122222111 12334 4899999999998 23444566667
Q ss_pred hhcCcEEEEEccccc
Q 024152 243 SLSQTILIFINQVFS 257 (271)
Q Consensus 243 ke~~~~Vi~~sql~~ 257 (271)
++.++|||+++|-..
T Consensus 193 ~~~g~tvi~vTHd~~ 207 (355)
T 1z47_A 193 DEMGVTSVFVTHDQE 207 (355)
T ss_dssp HHHTCEEEEECSCHH
T ss_pred HhcCCEEEEECCCHH
Confidence 778999999999753
No 39
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.46 E-value=1.5e-14 Score=131.07 Aligned_cols=139 Identities=15% Similarity=0.194 Sum_probs=94.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC-CHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-DPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 193 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~-~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~ 193 (271)
-+++|++++|.||||||||||++.|++...+++|.|. ++..... .....+.+++.+|+..+++.+++.+++.+..+..
T Consensus 25 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~-i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~ 103 (362)
T 2it1_A 25 KIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIY-FDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELR 103 (362)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEE-ETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHT
T ss_pred EECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEE-ECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhc
Confidence 5779999999999999999999999999999988855 4433221 1122457899999998888899999887643321
Q ss_pred hcC----------CccEEEEcchhhhcCCCccCCccchhhHHHHHHHH---------------------HHHHHHHHHHH
Q 024152 194 RSG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLM---------------------SQALRKLSHSL 242 (271)
Q Consensus 194 ~~~----------~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l---------------------~~~~r~L~~la 242 (271)
... -++.+-++.+.... ..+++ .|++||+..++++ ..+...|+++.
T Consensus 104 ~~~~~~~~~~v~~~l~~~~L~~~~~r~-~~~LS--GGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~ 180 (362)
T 2it1_A 104 KAPREEIDKKVREVAKMLHIDKLLNRY-PWQLS--GGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQ 180 (362)
T ss_dssp TCCHHHHHHHHHHHHHHTTCTTCTTCC-GGGSC--HHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCchHhhCC-hhhCC--HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHH
Confidence 000 01111112211111 12333 3899999999998 23444666667
Q ss_pred hhcCcEEEEEccccc
Q 024152 243 SLSQTILIFINQVFS 257 (271)
Q Consensus 243 ke~~~~Vi~~sql~~ 257 (271)
++.++|+|+++|-..
T Consensus 181 ~~~g~tvi~vTHd~~ 195 (362)
T 2it1_A 181 KELGITTVYVTHDQA 195 (362)
T ss_dssp HHHTCEEEEEESCHH
T ss_pred HhCCCEEEEECCCHH
Confidence 778999999999753
No 40
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.44 E-value=2.5e-14 Score=130.04 Aligned_cols=138 Identities=12% Similarity=0.157 Sum_probs=88.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC-CHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-DPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 193 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~-~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~ 193 (271)
-+++|++++|.||||||||||++.|++...+++|.|. ++.+... .....+.+++.+|+..+++.+++.+++.+..+..
T Consensus 33 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~-i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~ 111 (372)
T 1v43_A 33 TIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY-FGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK 111 (372)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEE-ETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEE-ECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc
Confidence 5779999999999999999999999999999988855 4433221 1122467899999988888889988876531110
Q ss_pred -------h---cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHH---------------------HHHHHHHHHHH
Q 024152 194 -------R---SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLM---------------------SQALRKLSHSL 242 (271)
Q Consensus 194 -------~---~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l---------------------~~~~r~L~~la 242 (271)
. ..-++.+-++.+.... ..++++ |++||+..++++ ..+...|+++.
T Consensus 112 ~~~~~~~~~~v~~~l~~~~L~~~~~r~-~~~LSG--Gq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~ 188 (372)
T 1v43_A 112 KFPKDEIDKRVRWAAELLQIEELLNRY-PAQLSG--GQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQ 188 (372)
T ss_dssp CCCHHHHHHHHHHHHHHTTCGGGTTSC-TTTCCS--SCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCChhHhcCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHH
Confidence 0 0001111122222222 234444 899999999998 23444566667
Q ss_pred hhcCcEEEEEcccc
Q 024152 243 SLSQTILIFINQVF 256 (271)
Q Consensus 243 ke~~~~Vi~~sql~ 256 (271)
++.++|+|+++|-.
T Consensus 189 ~~~g~tvi~vTHd~ 202 (372)
T 1v43_A 189 QKLKVTTIYVTHDQ 202 (372)
T ss_dssp HHHTCEEEEEESCH
T ss_pred HhCCCEEEEEeCCH
Confidence 77899999999975
No 41
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.44 E-value=1.6e-14 Score=130.76 Aligned_cols=139 Identities=15% Similarity=0.138 Sum_probs=93.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC-CHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-DPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 193 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~-~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~ 193 (271)
-+++|++++|.||||||||||++.|++...+++|.|. ++.+... .....+.+++.+|+..+++.+++.+++.+..+..
T Consensus 25 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~-i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~ 103 (359)
T 2yyz_A 25 EVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIY-FDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRAR 103 (359)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEE-ETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSS
T ss_pred EEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEE-ECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc
Confidence 5779999999999999999999999999999988855 4433221 1122457899999998888889999887532110
Q ss_pred ----hcC------CccEEEEcchhhhcCCCccCCccchhhHHHHHHHH---------------------HHHHHHHHHHH
Q 024152 194 ----RSG------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLM---------------------SQALRKLSHSL 242 (271)
Q Consensus 194 ----~~~------~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l---------------------~~~~r~L~~la 242 (271)
.+. -++.+-++.+.... ..+++ .|++||+..++++ ..+...|+++.
T Consensus 104 ~~~~~~~~~~v~~~l~~~~L~~~~~r~-~~~LS--gGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~ 180 (359)
T 2yyz_A 104 RISKDEVEKRVVEIARKLLIDNLLDRK-PTQLS--GGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQ 180 (359)
T ss_dssp CSHHHHTTHHHHHHHHHTTCGGGTTSC-GGGSC--HHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCchHhcCC-hhhCC--HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHH
Confidence 000 01111122222211 12344 3899999999988 23444566667
Q ss_pred hhcCcEEEEEccccc
Q 024152 243 SLSQTILIFINQVFS 257 (271)
Q Consensus 243 ke~~~~Vi~~sql~~ 257 (271)
++.++|+|+++|-..
T Consensus 181 ~~~g~tvi~vTHd~~ 195 (359)
T 2yyz_A 181 QELGITSVYVTHDQA 195 (359)
T ss_dssp HHHCCEEEEEESCHH
T ss_pred HhcCCEEEEEcCCHH
Confidence 778999999999753
No 42
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=99.43 E-value=1.6e-12 Score=112.52 Aligned_cols=73 Identities=11% Similarity=0.078 Sum_probs=64.4
Q ss_pred ccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCH--HHHHHcCCcCC
Q 024152 99 VVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--SLAETIGVKTE 172 (271)
Q Consensus 99 ~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~--~~~~~~g~~~~ 172 (271)
.++||++.||.+++ ||+++|.+++|.|.||+|||||+.+++...+..+.+++|++.+++... ..++.+|++++
T Consensus 2 ~i~tGi~~LD~~l~-GGl~~gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge~~~~~~~~e~~~~l~~~~~~~G~dl~ 76 (260)
T 3bs4_A 2 SLSWEIEELDREIG-KIKKHSLILIHEEDASSRGKDILFYILSRKLKSDNLVGMFSISYPLQLIIRILSRFGVDVI 76 (260)
T ss_dssp CBCCSSHHHHHHHC-CBCTTCEEEEEECSGGGCHHHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHTTCCHH
T ss_pred cCccCcHHHHHHhC-CCCCCCcEEEEEeCCCccHHHHHHHHHHHHHHCCCcEEEEEEeCCHHHHHHHHHHcCCCHH
Confidence 37899999999999 999999999999999999999999999999999889999999887765 34556777654
No 43
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.42 E-value=6e-14 Score=121.95 Aligned_cols=140 Identities=14% Similarity=0.122 Sum_probs=89.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC---CC-HHHHHHcCCcCCcceecCCCCHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA---LD-PSLAETIGVKTENLLLAQPDCGEQALSLVD 190 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~---~~-~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~ 190 (271)
-+++|++++|.||||||||||++.+++...+..|.|.|.+.+-. .. ..+++.+++.+|+..++...++.+++.+..
T Consensus 46 ~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~ 125 (263)
T 2olj_A 46 HIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAP 125 (263)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHH
T ss_pred EEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHH
Confidence 57799999999999999999999999999988888655332211 11 234667999999987777788988876632
Q ss_pred -HHHhcCCcc--EEEEcch------hhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHH
Q 024152 191 -TLIRSGSVD--VVVVDSV------AALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSH 240 (271)
Q Consensus 191 -~l~~~~~~~--lvvID~l------~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~ 240 (271)
... ..... .-.++.+ .....+....-+.|++||...++++. .+...|++
T Consensus 126 ~~~~-~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~ 204 (263)
T 2olj_A 126 MKVR-KWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQ 204 (263)
T ss_dssp HHTS-CCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred HHHc-CCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 110 00000 0001111 11111111122348889999888872 33445555
Q ss_pred HHhhcCcEEEEEcccc
Q 024152 241 SLSLSQTILIFINQVF 256 (271)
Q Consensus 241 lake~~~~Vi~~sql~ 256 (271)
+.++ +++||+++|..
T Consensus 205 l~~~-g~tvi~vtHd~ 219 (263)
T 2olj_A 205 LANE-GMTMVVVTHEM 219 (263)
T ss_dssp HHHT-TCEEEEECSCH
T ss_pred HHhC-CCEEEEEcCCH
Confidence 5555 99999999975
No 44
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.42 E-value=2e-14 Score=130.81 Aligned_cols=138 Identities=13% Similarity=0.126 Sum_probs=94.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC-------CHHHHHHcCCcCCcceecCCCCHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-------DPSLAETIGVKTENLLLAQPDCGEQALS 187 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~-------~~~~~~~~g~~~~~~~~~~~~~~~e~~~ 187 (271)
-+++|++++|.||||||||||++.|++...+++|.|.+ +.+... .....+.+|+.+|+..+++.+++.+++.
T Consensus 25 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i-~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~ 103 (372)
T 1g29_1 25 EVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYI-GDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIA 103 (372)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEE-TTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHH
T ss_pred EEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEE-CCEECccccccccCCHhHCCEEEEeCCCccCCCCCHHHHHH
Confidence 56799999999999999999999999999998888554 432211 1122456899999998888899999887
Q ss_pred HHHHHHhc----------CCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHH
Q 024152 188 LVDTLIRS----------GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALR 236 (271)
Q Consensus 188 ~~~~l~~~----------~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r 236 (271)
+..+.... .-++.+-++.+.... ..+++ .|++||+..++++. .+..
T Consensus 104 ~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~-~~~LS--GGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~ 180 (372)
T 1g29_1 104 FPLKLRKVPRQEIDQRVREVAELLGLTELLNRK-PRELS--GGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRA 180 (372)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCC-GGGSC--HHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCC-cccCC--HHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHH
Confidence 75432100 001111122221111 12344 48999999999983 3444
Q ss_pred HHHHHHhhcCcEEEEEcccc
Q 024152 237 KLSHSLSLSQTILIFINQVF 256 (271)
Q Consensus 237 ~L~~lake~~~~Vi~~sql~ 256 (271)
.|+++.++.++|+|+++|-.
T Consensus 181 ~l~~l~~~~g~tvi~vTHd~ 200 (372)
T 1g29_1 181 ELKKLQRQLGVTTIYVTHDQ 200 (372)
T ss_dssp HHHHHHHHHTCEEEEEESCH
T ss_pred HHHHHHHhcCCEEEEECCCH
Confidence 56666777899999999975
No 45
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.41 E-value=8.4e-14 Score=120.97 Aligned_cols=138 Identities=14% Similarity=0.133 Sum_probs=89.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC-----------CC----HHHHHHcCCcCCcceecCC
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA-----------LD----PSLAETIGVKTENLLLAQP 179 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~-----------~~----~~~~~~~g~~~~~~~~~~~ 179 (271)
-+++|++++|.||||||||||++.+++...+..|.|.|.+.+.. .. ..+++.+++.+|+..++..
T Consensus 28 ~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ 107 (262)
T 1b0u_A 28 QARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSH 107 (262)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTT
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEecCcccCCC
Confidence 57799999999999999999999999999998888655432211 11 1345679999999877777
Q ss_pred CCHHHHHHHHH-HHHh------c----CCccEEEEcch-hhhcCCCccCCccchhhHHHHHHHHH---------------
Q 024152 180 DCGEQALSLVD-TLIR------S----GSVDVVVVDSV-AALVPKGELDGEMGDAHMAMQARLMS--------------- 232 (271)
Q Consensus 180 ~~~~e~~~~~~-~l~~------~----~~~~lvvID~l-~~~~~~~~l~~~~g~~~~~~~~~~l~--------------- 232 (271)
.++.+++.+.. .... . .-+..+-++.. .... ...++ .|++||...++++.
T Consensus 108 ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-~~~LS--gGq~qRv~lAraL~~~p~lllLDEPts~L 184 (262)
T 1b0u_A 108 MTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKY-PVHLS--GGQQQRVSIARALAMEPDVLLFDEPTSAL 184 (262)
T ss_dssp SCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSC-GGGSC--HHHHHHHHHHHHHHTCCSEEEEESTTTTS
T ss_pred CcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCC-cccCC--HHHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence 88988876632 1100 0 00011111111 1111 12333 48999999999883
Q ss_pred ------HHHHHHHHHHhhcCcEEEEEcccc
Q 024152 233 ------QALRKLSHSLSLSQTILIFINQVF 256 (271)
Q Consensus 233 ------~~~r~L~~lake~~~~Vi~~sql~ 256 (271)
.+...|+.+.++ +.+||+++|..
T Consensus 185 D~~~~~~~~~~l~~l~~~-g~tvi~vtHd~ 213 (262)
T 1b0u_A 185 DPELVGEVLRIMQQLAEE-GKTMVVVTHEM 213 (262)
T ss_dssp CHHHHHHHHHHHHHHHHT-TCCEEEECSCH
T ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEeCCH
Confidence 233445555444 99999999975
No 46
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.40 E-value=1.4e-14 Score=131.02 Aligned_cols=139 Identities=17% Similarity=0.173 Sum_probs=93.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC------CHHHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL------DPSLAETIGVKTENLLLAQPDCGEQALSL 188 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~------~~~~~~~~g~~~~~~~~~~~~~~~e~~~~ 188 (271)
-+++|++++|.||||||||||++.|++...++.|.|.+ +.+... .....+.+++.+|+..+++.+++.+++.+
T Consensus 27 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i-~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~ 105 (353)
T 1oxx_K 27 NIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYF-DDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAF 105 (353)
T ss_dssp EECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEE-TTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHG
T ss_pred EECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE-CCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHH
Confidence 57799999999999999999999999999998888554 432211 11234568999999888888899988765
Q ss_pred HHHHHh----------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHH---------------------HHHHHH
Q 024152 189 VDTLIR----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLM---------------------SQALRK 237 (271)
Q Consensus 189 ~~~l~~----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l---------------------~~~~r~ 237 (271)
..+... ..-++.+-++.+.... ..+++ .|++||+..++++ .++...
T Consensus 106 ~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~-~~~LS--GGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~ 182 (353)
T 1oxx_K 106 PLTNMKMSKEEIRKRVEEVAKILDIHHVLNHF-PRELS--GAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARAL 182 (353)
T ss_dssp GGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSC-GGGSC--HHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCCchHhcCC-hhhCC--HHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHH
Confidence 321100 0001111122221111 12334 3899999999988 234456
Q ss_pred HHHHHhhcCcEEEEEccccc
Q 024152 238 LSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 238 L~~lake~~~~Vi~~sql~~ 257 (271)
|+++.++.++|+|+++|-..
T Consensus 183 l~~l~~~~g~tvi~vTHd~~ 202 (353)
T 1oxx_K 183 VKEVQSRLGVTLLVVSHDPA 202 (353)
T ss_dssp HHHHHHHHCCEEEEEESCHH
T ss_pred HHHHHHhcCCEEEEEeCCHH
Confidence 66667778999999999753
No 47
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.39 E-value=2e-13 Score=115.89 Aligned_cols=138 Identities=14% Similarity=0.126 Sum_probs=88.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC--CH----HH-HHHcCCcCCcceecCCCCHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--DP----SL-AETIGVKTENLLLAQPDCGEQALS 187 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~--~~----~~-~~~~g~~~~~~~~~~~~~~~e~~~ 187 (271)
-+++|++++|.||||||||||++.+++...+..|.|.| +..... .. .+ .+.+++.+|+..++...++.+++.
T Consensus 26 ~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~-~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~ 104 (224)
T 2pcj_A 26 SVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFL-EGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVI 104 (224)
T ss_dssp EEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEE-TTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHH
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-CCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHH
Confidence 56799999999999999999999999999998888655 433221 11 12 367999999988777788888876
Q ss_pred HHHHHHhc------CC----ccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHH
Q 024152 188 LVDTLIRS------GS----VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALR 236 (271)
Q Consensus 188 ~~~~l~~~------~~----~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r 236 (271)
+....... .. +..+-++...... ...++ .|++|+...++++. ....
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--gGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~ 181 (224)
T 2pcj_A 105 VPMLKMGKPKKEAKERGEYLLSELGLGDKLSRK-PYELS--GGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMD 181 (224)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCC-GGGSC--HHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHH
T ss_pred hHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCC-hhhCC--HHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 54322100 00 0000011111111 12233 38888888888872 3334
Q ss_pred HHHHHHhhcCcEEEEEccccc
Q 024152 237 KLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 237 ~L~~lake~~~~Vi~~sql~~ 257 (271)
.|+.++++ +.+||+++|...
T Consensus 182 ~l~~l~~~-g~tvi~vtHd~~ 201 (224)
T 2pcj_A 182 IFLKINEG-GTSIVMVTHERE 201 (224)
T ss_dssp HHHHHHHT-TCEEEEECSCHH
T ss_pred HHHHHHHC-CCEEEEEcCCHH
Confidence 45555555 999999999743
No 48
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.39 E-value=9.2e-14 Score=121.49 Aligned_cols=139 Identities=17% Similarity=0.188 Sum_probs=87.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC-C----HHHHHHcCCcCCcce-ecCCCCHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-D----PSLAETIGVKTENLL-LAQPDCGEQALSL 188 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~-~----~~~~~~~g~~~~~~~-~~~~~~~~e~~~~ 188 (271)
-+++|++++|.||||||||||++.+++...+.+|.|.+ +++... . ..+++.+|+.+|+.. .....++.+++.+
T Consensus 30 ~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~-~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~ 108 (275)
T 3gfo_A 30 NIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILF-DNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSF 108 (275)
T ss_dssp EEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE-TTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHH
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEE-CCEECCcccccHHHHhCcEEEEEcCcccccccCcHHHHHHH
Confidence 57799999999999999999999999999999888554 443221 1 134667999999762 2235678777665
Q ss_pred HHHHHh----------cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHH---------------------HHHHHH
Q 024152 189 VDTLIR----------SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLM---------------------SQALRK 237 (271)
Q Consensus 189 ~~~l~~----------~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l---------------------~~~~r~ 237 (271)
...... ..-++.+-++.+.... ...++ .|++||...++++ ..+...
T Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-~~~LS--gGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~ 185 (275)
T 3gfo_A 109 GAVNMKLPEDEIRKRVDNALKRTGIEHLKDKP-THCLS--FGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKL 185 (275)
T ss_dssp HHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSB-GGGSC--HHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCCchhhcCC-cccCC--HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHH
Confidence 432110 0000111112211111 12333 3888888888887 234445
Q ss_pred HHHHHhhcCcEEEEEccccc
Q 024152 238 LSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 238 L~~lake~~~~Vi~~sql~~ 257 (271)
|+++.++.|+|||+++|...
T Consensus 186 l~~l~~~~g~tvi~vtHdl~ 205 (275)
T 3gfo_A 186 LVEMQKELGITIIIATHDID 205 (275)
T ss_dssp HHHHHHHHCCEEEEEESCCS
T ss_pred HHHHHhhCCCEEEEEecCHH
Confidence 55555355999999999764
No 49
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.38 E-value=2.4e-13 Score=117.71 Aligned_cols=138 Identities=13% Similarity=0.149 Sum_probs=89.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC-HHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD-PSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 193 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~-~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~ 193 (271)
-+++|++++|.||||||||||++.+++...+..|.|.+.+.+.... ..+++.+++.+|+..++...++.+++.+.....
T Consensus 37 ~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~ 116 (256)
T 1vpl_A 37 EIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY 116 (256)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHH
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHc
Confidence 5779999999999999999999999999999888865543221111 244567899999887777778888876643221
Q ss_pred hcC----------CccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHH
Q 024152 194 RSG----------SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSL 242 (271)
Q Consensus 194 ~~~----------~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~la 242 (271)
... -+..+-++...... ...++ .|++||...++++. .+...|..+.
T Consensus 117 ~~~~~~~~~~~~~~l~~~gL~~~~~~~-~~~LS--gGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~ 193 (256)
T 1vpl_A 117 ASSSSEIEEMVERATEIAGLGEKIKDR-VSTYS--KGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQAS 193 (256)
T ss_dssp CCCHHHHHHHHHHHHHHHCCGGGGGSB-GGGCC--HHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHCCCchHhcCC-hhhCC--HHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHH
Confidence 000 01111111111111 12333 38888888888872 2333444443
Q ss_pred hhcCcEEEEEcccc
Q 024152 243 SLSQTILIFINQVF 256 (271)
Q Consensus 243 ke~~~~Vi~~sql~ 256 (271)
+.+.+||+++|..
T Consensus 194 -~~g~tiiivtHd~ 206 (256)
T 1vpl_A 194 -QEGLTILVSSHNM 206 (256)
T ss_dssp -HTTCEEEEEECCH
T ss_pred -hCCCEEEEEcCCH
Confidence 4589999999965
No 50
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.38 E-value=2.9e-13 Score=117.78 Aligned_cols=139 Identities=19% Similarity=0.201 Sum_probs=89.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC--CCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA--LDPSLAETIGVKTENLLLAQPDCGEQALSLVDTL 192 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~--~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l 192 (271)
-+++|++++|+||||||||||++.+++...+.+|.|.|.+.+-. ....+++.+++.+|...+....++.+++.+....
T Consensus 33 ~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~ 112 (266)
T 4g1u_C 33 HIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAP 112 (266)
T ss_dssp EEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTT
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhh
Confidence 56799999999999999999999999999999998655432211 1235567789999987776677888776543211
Q ss_pred HhcCC--------ccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHH---------------------------HHHH
Q 024152 193 IRSGS--------VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQ---------------------------ALRK 237 (271)
Q Consensus 193 ~~~~~--------~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~---------------------------~~r~ 237 (271)
..... +..+-++.+.... ...++ .|++||...++++.. +...
T Consensus 113 ~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS--gGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~ 189 (266)
T 4g1u_C 113 YGGSQDRQALQQVMAQTDCLALAQRD-YRVLS--GGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRL 189 (266)
T ss_dssp SCSTTHHHHHHHHHHHTTCSTTTTSB-GGGCC--HHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHcCChhHhcCC-cccCC--HHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHH
Confidence 00000 0000011111111 12233 388888888888764 2334
Q ss_pred HHHHHhhcCcEEEEEcccc
Q 024152 238 LSHSLSLSQTILIFINQVF 256 (271)
Q Consensus 238 L~~lake~~~~Vi~~sql~ 256 (271)
|+++.++.+++||+++|..
T Consensus 190 l~~l~~~~~~tvi~vtHdl 208 (266)
T 4g1u_C 190 LRQLTRQEPLAVCCVLHDL 208 (266)
T ss_dssp HHHHHHHSSEEEEEECSCH
T ss_pred HHHHHHcCCCEEEEEEcCH
Confidence 5555666788999999975
No 51
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.36 E-value=2.6e-13 Score=116.39 Aligned_cols=133 Identities=11% Similarity=0.117 Sum_probs=87.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHH---
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDT--- 191 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~--- 191 (271)
-+++ ++++|.||||||||||++.+++...+..|.|.+.+.+........+.+++.+|+..++...++.+++.+...
T Consensus 21 ~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~ 99 (240)
T 2onk_A 21 EMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVE 99 (240)
T ss_dssp EECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSC
T ss_pred EECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHcC
Confidence 5779 999999999999999999999999998888655332211111224568899998877777788887654211
Q ss_pred ----------HHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHH
Q 024152 192 ----------LIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSH 240 (271)
Q Consensus 192 ----------l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~ 240 (271)
+....+ ++.+.... ...++ .|++||...++++. .....|..
T Consensus 100 ~~~~~~~~~~~l~~~~-----l~~~~~~~-~~~LS--gGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~ 171 (240)
T 2onk_A 100 RVERDRRVREMAEKLG-----IAHLLDRK-PARLS--GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRF 171 (240)
T ss_dssp HHHHHHHHHHHHHTTT-----CTTTTTCC-GGGSC--HHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHcC-----CHHHhcCC-hhhCC--HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 111111 11111111 12233 48899999998882 34445555
Q ss_pred HHhhcCcEEEEEcccc
Q 024152 241 SLSLSQTILIFINQVF 256 (271)
Q Consensus 241 lake~~~~Vi~~sql~ 256 (271)
++++.+.+||+++|..
T Consensus 172 l~~~~g~tvi~vtHd~ 187 (240)
T 2onk_A 172 VQREFDVPILHVTHDL 187 (240)
T ss_dssp HHHHHTCCEEEEESCH
T ss_pred HHHhcCCEEEEEeCCH
Confidence 5566799999999975
No 52
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.34 E-value=2.7e-13 Score=114.31 Aligned_cols=138 Identities=20% Similarity=0.191 Sum_probs=88.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHh
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 194 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~ 194 (271)
-+++|++++|.||||+|||||++.+++...+..|.|.+ +..... .+.+.+++.+|+..++...++.+++.+......
T Consensus 31 ~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~-~g~~~~--~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~ 107 (214)
T 1sgw_A 31 TIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIY-NGVPIT--KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYG 107 (214)
T ss_dssp EEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE-TTEEGG--GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTT
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEE-CCEEhh--hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcC
Confidence 56799999999999999999999999999888888655 432221 245678999998877777788888776533211
Q ss_pred cCCccEEEEcchhhhc-----CCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHHhhcCcE
Q 024152 195 SGSVDVVVVDSVAALV-----PKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSLSLSQTI 248 (271)
Q Consensus 195 ~~~~~lvvID~l~~~~-----~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~lake~~~~ 248 (271)
. ....-.++.+.... .+....-+.|++|+...++++. .....|..+.+ .+.+
T Consensus 108 ~-~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~g~t 185 (214)
T 1sgw_A 108 V-KVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILK-EKGI 185 (214)
T ss_dssp C-CCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHH-HHSE
T ss_pred C-chHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHh-CCCE
Confidence 0 00000011111111 1111122348888888888872 33344444443 4899
Q ss_pred EEEEccccc
Q 024152 249 LIFINQVFS 257 (271)
Q Consensus 249 Vi~~sql~~ 257 (271)
||+++|...
T Consensus 186 iiivtHd~~ 194 (214)
T 1sgw_A 186 VIISSREEL 194 (214)
T ss_dssp EEEEESSCC
T ss_pred EEEEeCCHH
Confidence 999999764
No 53
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.33 E-value=6.8e-13 Score=114.85 Aligned_cols=74 Identities=20% Similarity=0.163 Sum_probs=56.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC-C--HHHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-D--PSLAETIGVKTENLLLAQPDCGEQALSL 188 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~-~--~~~~~~~g~~~~~~~~~~~~~~~e~~~~ 188 (271)
-+++|++++|.||||||||||++.+++...+.+|.|.+.+..-.. . ..+.+.+++.+|+..++...++.|++.+
T Consensus 29 ~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~ 105 (257)
T 1g6h_A 29 SVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLI 105 (257)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHG
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHH
Confidence 577999999999999999999999999999988886553322111 1 1234568999998777766788877654
No 54
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.32 E-value=1.3e-12 Score=113.67 Aligned_cols=140 Identities=15% Similarity=0.139 Sum_probs=86.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcc-eecCCCCHHHHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENL-LLAQPDCGEQALSLVDTLI 193 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~-~~~~~~~~~e~~~~~~~l~ 193 (271)
-+++|++++|.||||||||||++.|++...+.+|.|.+ +........+++.+++.+|+. ..+...++.+++.+.....
T Consensus 29 ~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~-~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~ 107 (266)
T 2yz2_A 29 VINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLY-DGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNF 107 (266)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEE-TTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTT
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCEECchHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhc
Confidence 57799999999999999999999999999888888554 433221113445689999984 3444578888776532110
Q ss_pred -hcCCccEEEEcchh--------hhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHHh
Q 024152 194 -RSGSVDVVVVDSVA--------ALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSLS 243 (271)
Q Consensus 194 -~~~~~~lvvID~l~--------~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~lak 243 (271)
...... -.++.+. ....+....-+.|++||...++++. .+...|+++.+
T Consensus 108 ~~~~~~~-~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~ 186 (266)
T 2yz2_A 108 YPDRDPV-PLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKT 186 (266)
T ss_dssp CTTSCSH-HHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHH-HHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHH
Confidence 000000 0011111 1111111122348899999998872 33445555555
Q ss_pred hcCcEEEEEccccc
Q 024152 244 LSQTILIFINQVFS 257 (271)
Q Consensus 244 e~~~~Vi~~sql~~ 257 (271)
+ +.+||+++|...
T Consensus 187 ~-g~tii~vtHd~~ 199 (266)
T 2yz2_A 187 L-GKTVILISHDIE 199 (266)
T ss_dssp T-TCEEEEECSCCT
T ss_pred c-CCEEEEEeCCHH
Confidence 5 999999999753
No 55
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.30 E-value=4.8e-13 Score=114.70 Aligned_cols=140 Identities=14% Similarity=0.154 Sum_probs=87.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC-CH-HH-HHHcCCcCCcceecCCCCHHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL-DP-SL-AETIGVKTENLLLAQPDCGEQALSLVDT 191 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~-~~-~~-~~~~g~~~~~~~~~~~~~~~e~~~~~~~ 191 (271)
-+++|++++|.||||+|||||++.+++...+..|.|.+.+..... .. .+ .+.+++.+|+..++...++.|++.+...
T Consensus 28 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~ 107 (240)
T 1ji0_A 28 KVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAY 107 (240)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGT
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhh
Confidence 577999999999999999999999999999988886553322111 11 22 3348999998877777788887765321
Q ss_pred HHhcCC-----ccEEEEcc---hhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHH
Q 024152 192 LIRSGS-----VDVVVVDS---VAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSL 242 (271)
Q Consensus 192 l~~~~~-----~~lvvID~---l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~la 242 (271)
...... +.. +++. +.....+....-+.|++|+...++++. .+...|+++.
T Consensus 108 ~~~~~~~~~~~~~~-~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~ 186 (240)
T 1ji0_A 108 NRKDKEGIKRDLEW-IFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKIN 186 (240)
T ss_dssp TCCCSSHHHHHHHH-HHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHH-HHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 000000 000 0111 111111111222348899999888872 2333444444
Q ss_pred hhcCcEEEEEcccc
Q 024152 243 SLSQTILIFINQVF 256 (271)
Q Consensus 243 ke~~~~Vi~~sql~ 256 (271)
+ .+++||+++|..
T Consensus 187 ~-~g~tvi~vtHd~ 199 (240)
T 1ji0_A 187 Q-EGTTILLVEQNA 199 (240)
T ss_dssp H-TTCCEEEEESCH
T ss_pred H-CCCEEEEEecCH
Confidence 3 689999999975
No 56
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.28 E-value=1.6e-12 Score=113.47 Aligned_cols=139 Identities=20% Similarity=0.204 Sum_probs=86.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC---CCHHHHHHcCCcCCcceecCCCCHHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA---LDPSLAETIGVKTENLLLAQPDCGEQALSLVDT 191 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~---~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~ 191 (271)
-+++|++++|.||||||||||++.|++...+..|.|.| +.... ....+++.+++.+|+..++. .++.+++.+...
T Consensus 41 ~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~-~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~ 118 (271)
T 2ixe_A 41 TLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLL-DGEPLVQYDHHYLHTQVAAVGQEPLLFG-RSFRENIAYGLT 118 (271)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEE-TTEEGGGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHTTCS
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEE-CCEEcccCCHHHHhccEEEEecCCcccc-ccHHHHHhhhcc
Confidence 57799999999999999999999999999998888554 43221 11345677999999887765 488877654210
Q ss_pred -------H---HhcCCccEEEEcc----hhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHH
Q 024152 192 -------L---IRSGSVDVVVVDS----VAALVPKGELDGEMGDAHMAMQARLMS---------------------QALR 236 (271)
Q Consensus 192 -------l---~~~~~~~lvvID~----l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r 236 (271)
. .....+.- +++. +.....+....-+.|++||...++++. .+..
T Consensus 119 ~~~~~~~~~~~~~~~~~~~-~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~ 197 (271)
T 2ixe_A 119 RTPTMEEITAVAMESGAHD-FISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQR 197 (271)
T ss_dssp SCCCHHHHHHHHHHHTCHH-HHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHhHHH-HHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHH
Confidence 0 00000000 0110 111111111122348999999999882 2333
Q ss_pred HHHHHHhhcCcEEEEEcccc
Q 024152 237 KLSHSLSLSQTILIFINQVF 256 (271)
Q Consensus 237 ~L~~lake~~~~Vi~~sql~ 256 (271)
.|+.+.++.+++||+++|..
T Consensus 198 ~l~~~~~~~g~tviivtHd~ 217 (271)
T 2ixe_A 198 LLYESPEWASRTVLLITQQL 217 (271)
T ss_dssp HHHHCTTTTTSEEEEECSCH
T ss_pred HHHHHHhhcCCEEEEEeCCH
Confidence 44444445589999999975
No 57
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.27 E-value=2.3e-12 Score=111.04 Aligned_cols=138 Identities=18% Similarity=0.191 Sum_probs=83.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHH--HhhcCCeEEEEcCCCCC--CH-HH-HHHcCCcCCcceecCCCCHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAE--AQRQGGYCVFIDAEHAL--DP-SL-AETIGVKTENLLLAQPDCGEQALSL 188 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~--~~~~~g~v~~~~~e~~~--~~-~~-~~~~g~~~~~~~~~~~~~~~e~~~~ 188 (271)
-+++|++++|.||||+|||||++.+++. ..+.+|.|.| ++.... .. .+ ...+++.+|+..+++..++.+++.+
T Consensus 25 ~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~-~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~ 103 (250)
T 2d2e_A 25 VVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILL-DGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRL 103 (250)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEE-TTEECTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHH
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEE-CCEECCCCCHHHHHhCcEEEeccCCccccCCCHHHHHHH
Confidence 5779999999999999999999999997 5677887554 433221 11 22 2347889998887777888887765
Q ss_pred HHHHHhcC--C-----------ccEEEEc-chhhhcCCCc-cCCccchhhHHHHHHHHHH--------------------
Q 024152 189 VDTLIRSG--S-----------VDVVVVD-SVAALVPKGE-LDGEMGDAHMAMQARLMSQ-------------------- 233 (271)
Q Consensus 189 ~~~l~~~~--~-----------~~lvvID-~l~~~~~~~~-l~~~~g~~~~~~~~~~l~~-------------------- 233 (271)
........ . +..+-++ .+.... ... +++ |++||...++++..
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-~~~~LSg--GqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~ 180 (250)
T 2d2e_A 104 ALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRY-LNEGFSG--GEKKRNEILQLLVLEPTYAVLDETDSGLDIDALK 180 (250)
T ss_dssp HHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSB-TTCC------HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHH
T ss_pred HHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCC-cccCCCH--HHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHH
Confidence 43211100 0 0000111 111111 122 444 89999999998832
Q ss_pred -HHHHHHHHHhhcCcEEEEEccccc
Q 024152 234 -ALRKLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 234 -~~r~L~~lake~~~~Vi~~sql~~ 257 (271)
....|+++ ++.+.+||+++|...
T Consensus 181 ~l~~~l~~l-~~~g~tvi~vtHd~~ 204 (250)
T 2d2e_A 181 VVARGVNAM-RGPNFGALVITHYQR 204 (250)
T ss_dssp HHHHHHHHH-CSTTCEEEEECSSSG
T ss_pred HHHHHHHHH-HhcCCEEEEEecCHH
Confidence 23334333 345899999999643
No 58
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.27 E-value=8.7e-13 Score=113.55 Aligned_cols=72 Identities=24% Similarity=0.303 Sum_probs=55.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC---CHHHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLLLAQPDCGEQALSL 188 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~---~~~~~~~~g~~~~~~~~~~~~~~~e~~~~ 188 (271)
-+++|++++|.||||||||||++.|++...+..|.|.| +..... ...+++.+++.+|+..++. .++.+++.+
T Consensus 31 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i-~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~ 105 (247)
T 2ff7_A 31 SIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLI-DGHDLALADPNWLRRQVGVVLQDNVLLN-RSIIDNISL 105 (247)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEE-TTEETTTSCHHHHHHHEEEECSSCCCTT-SBHHHHHTT
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE-CCEEhhhCCHHHHHhcEEEEeCCCcccc-ccHHHHHhc
Confidence 56799999999999999999999999999998888554 432221 1345677999999877664 477776643
No 59
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.26 E-value=2.1e-12 Score=111.61 Aligned_cols=63 Identities=17% Similarity=0.206 Sum_probs=47.9
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSL 188 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~ 188 (271)
-+++|++++|.||||+|||||++.+++...+.+|.|.+ .+.+++.+|+..++...++.+++.+
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~-----------~~~i~~v~q~~~~~~~~tv~enl~~ 89 (253)
T 2nq2_C 27 DLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV-----------YQSIGFVPQFFSSPFAYSVLDIVLM 89 (253)
T ss_dssp EEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEE-----------CSCEEEECSCCCCSSCCBHHHHHHG
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE-----------eccEEEEcCCCccCCCCCHHHHHHH
Confidence 56799999999999999999999999999988887641 2245666666555555566665543
No 60
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.25 E-value=1.3e-12 Score=114.41 Aligned_cols=139 Identities=19% Similarity=0.203 Sum_probs=83.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC---CC-HHHHHHcCCcCCcceecC--CCCHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA---LD-PSLAETIGVKTENLLLAQ--PDCGEQALSL 188 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~---~~-~~~~~~~g~~~~~~~~~~--~~~~~e~~~~ 188 (271)
-+++|++++|.||||||||||++.+++...+..|.|.|.+.+-. .. ..+.+.+++.+|+..... ..++.+++.+
T Consensus 43 ~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~ 122 (279)
T 2ihy_A 43 QIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVIS 122 (279)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHT
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHh
Confidence 56799999999999999999999999999998888655432211 11 244566888888764322 3477776654
Q ss_pred HHH----HHhcCC----------ccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------H
Q 024152 189 VDT----LIRSGS----------VDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------Q 233 (271)
Q Consensus 189 ~~~----l~~~~~----------~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~ 233 (271)
... +..... +..+-++.+.... ...++ .|++||...++++. .
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~LS--gGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~ 199 (279)
T 2ihy_A 123 GAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQY-IGYLS--TGEKQRVMIARALMGQPQVLILDEPAAGLDFIARES 199 (279)
T ss_dssp TC---------CCHHHHHHHHHHHHHTTCGGGTTSB-GGGSC--HHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHH
T ss_pred hhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCC-hhhCC--HHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHH
Confidence 210 000000 0000011111111 12233 38888888888873 2
Q ss_pred HHHHHHHHHhhcCcEE--EEEccccc
Q 024152 234 ALRKLSHSLSLSQTIL--IFINQVFS 257 (271)
Q Consensus 234 ~~r~L~~lake~~~~V--i~~sql~~ 257 (271)
+...|+.+.++ +.+| |+++|...
T Consensus 200 l~~~l~~l~~~-g~tv~~iivtHd~~ 224 (279)
T 2ihy_A 200 LLSILDSLSDS-YPTLAMIYVTHFIE 224 (279)
T ss_dssp HHHHHHHHHHH-CTTCEEEEEESCGG
T ss_pred HHHHHHHHHHC-CCEEEEEEEecCHH
Confidence 33445555555 8899 99999753
No 61
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.22 E-value=1.9e-11 Score=105.22 Aligned_cols=72 Identities=18% Similarity=0.216 Sum_probs=55.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC---CCHHHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA---LDPSLAETIGVKTENLLLAQPDCGEQALSL 188 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~---~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~ 188 (271)
-+++|++++|.||||+|||||++.+++...+. |.|.+ +.... ....+++.+++.+|+..++...++.+++.+
T Consensus 22 ~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~-~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~ 96 (249)
T 2qi9_C 22 EVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQF-AGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTL 96 (249)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEE-TTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHT
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEE-CCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHHHH
Confidence 56799999999999999999999999999988 87554 43221 123456679999998776666677766543
No 62
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.20 E-value=1.8e-11 Score=106.43 Aligned_cols=74 Identities=23% Similarity=0.290 Sum_probs=54.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHH--hhcCCeEEEEcCCCC--CCH-HH-HHHcCCcCCcceecCCCCHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEA--QRQGGYCVFIDAEHA--LDP-SL-AETIGVKTENLLLAQPDCGEQALSL 188 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~--~~~~g~v~~~~~e~~--~~~-~~-~~~~g~~~~~~~~~~~~~~~e~~~~ 188 (271)
-+++|++++|.||||||||||++.+++.. .+..|.|. ++.... ... .+ ...+++.+|+..++...++.+++..
T Consensus 42 ~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~-~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~ 120 (267)
T 2zu0_C 42 DVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVE-FKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQT 120 (267)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEE-ETTEEGGGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHH
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEE-ECCEECCcCCHHHHhhCCEEEEccCccccccccHHHHHHH
Confidence 57799999999999999999999999984 46778755 443321 111 22 2347888998877777788777654
Q ss_pred H
Q 024152 189 V 189 (271)
Q Consensus 189 ~ 189 (271)
.
T Consensus 121 ~ 121 (267)
T 2zu0_C 121 A 121 (267)
T ss_dssp H
T ss_pred H
Confidence 3
No 63
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.19 E-value=2.3e-12 Score=114.15 Aligned_cols=72 Identities=22% Similarity=0.338 Sum_probs=56.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC---CCHHHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA---LDPSLAETIGVKTENLLLAQPDCGEQALSL 188 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~---~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~ 188 (271)
-+++|++++|+||||||||||++.+++...+..|.|. +++... ....+++.+++.+|+..++. .++.+++.+
T Consensus 76 ~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~-i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~-~Tv~eNi~~ 150 (306)
T 3nh6_A 76 TVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIR-IDGQDISQVTQASLRSHIGVVPQDTVLFN-DTIADNIRY 150 (306)
T ss_dssp EECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEE-ETTEETTSBCHHHHHHTEEEECSSCCCCS-EEHHHHHHT
T ss_pred EEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEE-ECCEEcccCCHHHHhcceEEEecCCccCc-ccHHHHHHh
Confidence 5789999999999999999999999999999989855 444322 12356778999999887764 466666543
No 64
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.17 E-value=1.2e-12 Score=112.48 Aligned_cols=72 Identities=14% Similarity=0.133 Sum_probs=52.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC--CCHHHHHHcCCcCCcceecCCCCHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA--LDPSLAETIGVKTENLLLAQPDCGEQALS 187 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~--~~~~~~~~~g~~~~~~~~~~~~~~~e~~~ 187 (271)
-+++|++++|.||||+|||||++.+++...+..|.|.+.+.... ....+++.+++.+|+..++. .++.+++.
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~ 97 (243)
T 1mv5_A 24 EAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA-GTIRENLT 97 (243)
T ss_dssp EECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC-EEHHHHTT
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCcccc-ccHHHHHh
Confidence 57799999999999999999999999999999998655332111 11223456888888876654 36666554
No 65
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.10 E-value=4.7e-11 Score=114.69 Aligned_cols=72 Identities=21% Similarity=0.314 Sum_probs=56.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC---CCHHHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA---LDPSLAETIGVKTENLLLAQPDCGEQALSL 188 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~---~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~ 188 (271)
-+++|++++|.||||+|||||++.+++...+++|.|.+ ++... ....+++.+++.+|+..+++ .++.|++..
T Consensus 365 ~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~-~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~ 439 (582)
T 3b5x_A 365 SIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICL-DGHDVRDYKLTNLRRHFALVSQNVHLFN-DTIANNIAY 439 (582)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEE-CCEEhhhCCHHHHhcCeEEEcCCCcccc-ccHHHHHhc
Confidence 67899999999999999999999999999999998655 43221 12345667899999887765 377776654
No 66
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.08 E-value=6.6e-11 Score=102.50 Aligned_cols=71 Identities=20% Similarity=0.264 Sum_probs=52.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC---CCHHHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA---LDPSLAETIGVKTENLLLAQPDCGEQALSL 188 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~---~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~ 188 (271)
-+++|++++|.||||||||||++.|++...+ .|.|. ++.... ....+++.+++.+|+..++. .++.+++.+
T Consensus 42 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~-i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~ 115 (260)
T 2ghi_A 42 FIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIK-IGGKNVNKYNRNSIRSIIGIVPQDTILFN-ETIKYNILY 115 (260)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEE-ETTEEGGGBCHHHHHTTEEEECSSCCCCS-EEHHHHHHT
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEE-ECCEEhhhcCHHHHhccEEEEcCCCcccc-cCHHHHHhc
Confidence 5779999999999999999999999998865 67654 444322 11245567899999877664 477776654
No 67
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.07 E-value=1.6e-11 Score=104.35 Aligned_cols=62 Identities=15% Similarity=0.278 Sum_probs=49.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSL 188 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~ 188 (271)
-+++|++++|.||||||||||++.+++...+..|.|.+.+ .+++.+|+..+++. ++.+++.+
T Consensus 30 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-----------~i~~v~q~~~~~~~-tv~enl~~ 91 (229)
T 2pze_A 30 KIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-----------RISFCSQFSWIMPG-TIKENIIF 91 (229)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-----------CEEEECSSCCCCSB-CHHHHHHT
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-----------EEEEEecCCcccCC-CHHHHhhc
Confidence 5679999999999999999999999999999888865533 36777777666553 77766643
No 68
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.06 E-value=6.9e-11 Score=107.99 Aligned_cols=70 Identities=20% Similarity=0.245 Sum_probs=53.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC--C-HHHHHHcCCcCCcceecCCCCHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--D-PSLAETIGVKTENLLLAQPDCGEQALS 187 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~--~-~~~~~~~g~~~~~~~~~~~~~~~e~~~ 187 (271)
-+++|++++|.||||||||||++.|++... ..|.| +++..... . ..+++.+++.+|+..++. .++.+++.
T Consensus 43 ~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I-~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~ 115 (390)
T 3gd7_A 43 SISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEI-QIDGVSWDSITLEQWRKAFGVIPQKVFIFS-GTFRKNLD 115 (390)
T ss_dssp EECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEE-EESSCBTTSSCHHHHHHTEEEESCCCCCCS-EEHHHHHC
T ss_pred EEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEE-EECCEECCcCChHHHhCCEEEEcCCcccCc-cCHHHHhh
Confidence 577999999999999999999999999877 77774 55544322 2 245678999999987765 47776653
No 69
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.06 E-value=5.3e-11 Score=103.27 Aligned_cols=134 Identities=15% Similarity=0.094 Sum_probs=81.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcC-CcCCcceecCCCCHHHHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIG-VKTENLLLAQPDCGEQALSLVDTLI 193 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g-~~~~~~~~~~~~~~~e~~~~~~~l~ 193 (271)
-++ |++++|.||||+|||||++.+++.. +..|.|.+.+.+-..... .+.++ +.+|+..+ ..++.+++.+...+.
T Consensus 27 ~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~-~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~ 101 (263)
T 2pjz_A 27 EVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRN-YIRYSTNLPEAYEI--GVTVNDIVYLYEELK 101 (263)
T ss_dssp EEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSC-CTTEEECCGGGSCT--TSBHHHHHHHHHHHT
T ss_pred EEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHH-hhheEEEeCCCCcc--CCcHHHHHHHhhhhc
Confidence 688 9999999999999999999999999 988886553311100011 34678 88888765 678888776543321
Q ss_pred hcCC-------ccEEEEc-chhhhcCCCccCCccchhhHHHHHHHHH-----------------HHHHHHHHHHhhcCcE
Q 024152 194 RSGS-------VDVVVVD-SVAALVPKGELDGEMGDAHMAMQARLMS-----------------QALRKLSHSLSLSQTI 248 (271)
Q Consensus 194 ~~~~-------~~lvvID-~l~~~~~~~~l~~~~g~~~~~~~~~~l~-----------------~~~r~L~~lake~~~~ 248 (271)
... +..+-++ .+.... ...++ .|++||...++++. .....+..+.++...+
T Consensus 102 -~~~~~~~~~~l~~~gl~~~~~~~~-~~~LS--gGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~t 177 (263)
T 2pjz_A 102 -GLDRDLFLEMLKALKLGEEILRRK-LYKLS--AGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKE 177 (263)
T ss_dssp -CCCHHHHHHHHHHTTCCGGGGGSB-GGGSC--HHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCSE
T ss_pred -chHHHHHHHHHHHcCCChhHhcCC-hhhCC--HHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcCc
Confidence 000 0000011 111111 12233 48899999998883 2222333344444339
Q ss_pred EEEEccccc
Q 024152 249 LIFINQVFS 257 (271)
Q Consensus 249 Vi~~sql~~ 257 (271)
||+++|...
T Consensus 178 viivtHd~~ 186 (263)
T 2pjz_A 178 GILVTHELD 186 (263)
T ss_dssp EEEEESCGG
T ss_pred EEEEEcCHH
Confidence 999999753
No 70
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.04 E-value=3.8e-11 Score=115.63 Aligned_cols=127 Identities=17% Similarity=0.215 Sum_probs=79.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHH-HHHHh
Q 024152 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLV-DTLIR 194 (271)
Q Consensus 116 l~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~-~~l~~ 194 (271)
+++|++++|.||||+|||||++.+++...+..|.|.+ . ..+++.+|+.......++.+++... .....
T Consensus 379 v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~-~----------~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~ 447 (607)
T 3bk7_A 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-D----------LTVAYKPQYIKAEYEGTVYELLSKIDSSKLN 447 (607)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC-C----------CCEEEECSSCCCCCSSBHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-e----------eEEEEEecCccCCCCCcHHHHHHhhhccCCC
Confidence 5799999999999999999999999999888887543 1 2367777776554556676665443 11000
Q ss_pred -----cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHHHHHHHHhhcCcE
Q 024152 195 -----SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMS---------------------QALRKLSHSLSLSQTI 248 (271)
Q Consensus 195 -----~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r~L~~lake~~~~ 248 (271)
..-+..+-++.+.... -..++ .|++|+...++++. ...+.|.+++++.+.+
T Consensus 448 ~~~~~~~~l~~~~l~~~~~~~-~~~LS--GGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~t 524 (607)
T 3bk7_A 448 SNFYKTELLKPLGIIDLYDRN-VEDLS--GGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKT 524 (607)
T ss_dssp CHHHHHHTHHHHTCTTTTTSB-GGGCC--HHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHcCCchHhcCC-hhhCC--HHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCE
Confidence 0001111111111111 12233 37788888887772 3444555556678999
Q ss_pred EEEEcccc
Q 024152 249 LIFINQVF 256 (271)
Q Consensus 249 Vi~~sql~ 256 (271)
||+++|-.
T Consensus 525 vi~vsHd~ 532 (607)
T 3bk7_A 525 ALVVEHDV 532 (607)
T ss_dssp EEEECSCH
T ss_pred EEEEeCCH
Confidence 99999975
No 71
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.04 E-value=4.8e-11 Score=113.54 Aligned_cols=127 Identities=17% Similarity=0.217 Sum_probs=78.0
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHH-HHHHh
Q 024152 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLV-DTLIR 194 (271)
Q Consensus 116 l~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~-~~l~~ 194 (271)
+++|++++|+|+||+|||||++.|++...+..|.|.+ . ..+++.+|+.......++.+++... .....
T Consensus 309 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~-~----------~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~ 377 (538)
T 1yqt_A 309 IKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW-D----------LTVAYKPQYIKADYEGTVYELLSKIDASKLN 377 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC-C----------CCEEEECSSCCCCCSSBHHHHHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-C----------ceEEEEecCCcCCCCCcHHHHHHhhhccCCC
Confidence 5799999999999999999999999999888887543 1 1366777766544455666655433 11000
Q ss_pred -----cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHH---------------------HHHHHHHHHHHhhcCcE
Q 024152 195 -----SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLM---------------------SQALRKLSHSLSLSQTI 248 (271)
Q Consensus 195 -----~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l---------------------~~~~r~L~~lake~~~~ 248 (271)
..-+..+-+....... -..++ .|++|+...++++ ..+...|..++++.+.+
T Consensus 378 ~~~~~~~~l~~~~l~~~~~~~-~~~LS--GGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~t 454 (538)
T 1yqt_A 378 SNFYKTELLKPLGIIDLYDRE-VNELS--GGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKT 454 (538)
T ss_dssp CHHHHHHTTTTTTCGGGTTSB-GGGCC--HHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCE
T ss_pred HHHHHHHHHHHcCChhhhcCC-hhhCC--HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCE
Confidence 0001111111111110 12233 3777888777777 23444555556678999
Q ss_pred EEEEcccc
Q 024152 249 LIFINQVF 256 (271)
Q Consensus 249 Vi~~sql~ 256 (271)
||+++|-.
T Consensus 455 vi~vsHd~ 462 (538)
T 1yqt_A 455 ALVVEHDV 462 (538)
T ss_dssp EEEECSCH
T ss_pred EEEEeCCH
Confidence 99999975
No 72
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.03 E-value=7.4e-11 Score=113.30 Aligned_cols=138 Identities=17% Similarity=0.200 Sum_probs=86.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC---CHHHHHHcCCcCCcceecCCCCHHHHHHHHH-
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLLLAQPDCGEQALSLVD- 190 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~---~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~- 190 (271)
-+++|++++|.||||+|||||++.+++...+++|.|. +++.... ...+++.+++.+|+..+++ .++.|++....
T Consensus 365 ~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~-~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~ 442 (582)
T 3b60_A 365 KIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHIL-MDGHDLREYTLASLRNQVALVSQNVHLFN-DTVANNIAYART 442 (582)
T ss_dssp EECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEE-ETTEETTTBCHHHHHHTEEEECSSCCCCS-SBHHHHHHTTTT
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEE-ECCEEccccCHHHHHhhCeEEccCCcCCC-CCHHHHHhccCC
Confidence 5789999999999999999999999999999988854 4443221 2356677999999987765 47777765422
Q ss_pred ---------HHHhcCCccEEEEcc----hhhhcCCCccCCccchhhHHHHHHHHH---------------------HHHH
Q 024152 191 ---------TLIRSGSVDVVVVDS----VAALVPKGELDGEMGDAHMAMQARLMS---------------------QALR 236 (271)
Q Consensus 191 ---------~l~~~~~~~lvvID~----l~~~~~~~~l~~~~g~~~~~~~~~~l~---------------------~~~r 236 (271)
+.....++.- .++. +..........-+.|++||...+|++. .+.+
T Consensus 443 ~~~~~~~~~~~l~~~~l~~-~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~ 521 (582)
T 3b60_A 443 EEYSREQIEEAARMAYAMD-FINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQA 521 (582)
T ss_dssp SCCCHHHHHHHHHTTTCHH-HHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHcCCHH-HHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHH
Confidence 0011111100 0110 111111111122348999999999883 2333
Q ss_pred HHHHHHhhcCcEEEEEccccc
Q 024152 237 KLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 237 ~L~~lake~~~~Vi~~sql~~ 257 (271)
.+.++. + ++|+|+++|-..
T Consensus 522 ~l~~~~-~-~~tvi~itH~~~ 540 (582)
T 3b60_A 522 ALDELQ-K-NRTSLVIAHRLS 540 (582)
T ss_dssp HHHHHH-T-TSEEEEECSCGG
T ss_pred HHHHHh-C-CCEEEEEeccHH
Confidence 444433 3 899999999653
No 73
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.00 E-value=3.2e-10 Score=96.80 Aligned_cols=61 Identities=20% Similarity=0.373 Sum_probs=46.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALS 187 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~ 187 (271)
-+++|++++|.||||||||||++.+++...+..|.|.+.+ .+++.+|+..+ ...++.+++.
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-----------~i~~v~Q~~~~-~~~tv~enl~ 87 (237)
T 2cbz_A 27 SIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-----------SVAYVPQQAWI-QNDSLRENIL 87 (237)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-----------CEEEECSSCCC-CSEEHHHHHH
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-----------EEEEEcCCCcC-CCcCHHHHhh
Confidence 5779999999999999999999999999999888865433 25666666543 2345555554
No 74
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.00 E-value=1.9e-10 Score=109.37 Aligned_cols=37 Identities=30% Similarity=0.505 Sum_probs=33.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEE
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCV 151 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~ 151 (271)
-+++|++++|+|+||||||||++.+++...+..|.|.
T Consensus 290 ~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 326 (538)
T 3ozx_A 290 EAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVT 326 (538)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEE
T ss_pred eECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 3679999999999999999999999999999888764
No 75
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=98.98 E-value=8.2e-11 Score=113.28 Aligned_cols=72 Identities=21% Similarity=0.319 Sum_probs=56.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC---CHHHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLLLAQPDCGEQALSL 188 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~---~~~~~~~~g~~~~~~~~~~~~~~~e~~~~ 188 (271)
-+++|++++|+||||+|||||++.+++...+.+|.|. +++.... ...+++.+++.+|+..+++ .++.|++.+
T Consensus 366 ~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~-~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~ 440 (595)
T 2yl4_A 366 SIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTIS-LDGHDIRQLNPVWLRSKIGTVSQEPILFS-CSIAENIAY 440 (595)
T ss_dssp EECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEE-ETTEETTTBCHHHHHHSEEEECSSCCCCS-SBHHHHHHT
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEE-ECCEEhhhCCHHHHHhceEEEccCCcccC-CCHHHHHhh
Confidence 5789999999999999999999999999999888854 5543221 2345677999999887765 477776654
No 76
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=98.98 E-value=2.5e-09 Score=90.37 Aligned_cols=115 Identities=12% Similarity=0.115 Sum_probs=77.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC--CHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHh
Q 024152 117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL--DPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 194 (271)
Q Consensus 117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~--~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~ 194 (271)
.+|.++.+.|++|+||||+++.++.++...+.+|+++..+... ...+.+++|+......+ ....++.+.++....
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~---~~~~~i~~~i~~~~~ 86 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEV---ESAPEILNYIMSNSF 86 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEE---SSTHHHHHHHHSTTS
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhcCCCcccccc---CCHHHHHHHHHHHhh
Confidence 4789999999999999999999999998888888888543221 11233445554444332 234566666655444
Q ss_pred cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcccc
Q 024152 195 SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVF 256 (271)
Q Consensus 195 ~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~ 256 (271)
...+++|+||++|.+.. .+.+.++.| ++ .+++||++.+..
T Consensus 87 ~~~~dvViIDEaQ~l~~------------------~~ve~l~~L---~~-~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 87 NDETKVIGIDEVQFFDD------------------RICEVANIL---AE-NGFVVIISGLDK 126 (223)
T ss_dssp CTTCCEEEECSGGGSCT------------------HHHHHHHHH---HH-TTCEEEEECCSB
T ss_pred CCCCCEEEEecCccCcH------------------HHHHHHHHH---Hh-CCCeEEEEeccc
Confidence 45689999999998642 111233333 44 499999999854
No 77
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=98.95 E-value=9.6e-11 Score=103.06 Aligned_cols=61 Identities=16% Similarity=0.318 Sum_probs=47.9
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALS 187 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~ 187 (271)
-+++|++++|.||||+|||||++.|++...+..|.|.+.+ .+++.+|+..++. .++.+++.
T Consensus 60 ~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-----------~i~~v~Q~~~l~~-~tv~enl~ 120 (290)
T 2bbs_A 60 KIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-----------RISFCSQNSWIMP-GTIKENII 120 (290)
T ss_dssp EECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-----------CEEEECSSCCCCS-SBHHHHHH
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-----------EEEEEeCCCccCc-ccHHHHhh
Confidence 5679999999999999999999999999998888865432 3677777765554 36666654
No 78
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.93 E-value=1.8e-09 Score=95.51 Aligned_cols=134 Identities=18% Similarity=0.109 Sum_probs=78.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC---CH---HH--HHHcCCcCCcceecCCCCHHHHHHHH
Q 024152 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DP---SL--AETIGVKTENLLLAQPDCGEQALSLV 189 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~---~~---~~--~~~~g~~~~~~~~~~~~~~~e~~~~~ 189 (271)
+|++++|+|||||||||++..+++...+++|+|.+.+.+... .. .+ ...+++.+|.....+..++.+.+..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 789999999999999999999999999999998877654321 11 12 23356666654433223344554433
Q ss_pred HHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHH----------------HHHHHHHHHHHhhcCcEEEEEc
Q 024152 190 DTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLM----------------SQALRKLSHSLSLSQTILIFIN 253 (271)
Q Consensus 190 ~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l----------------~~~~r~L~~lake~~~~Vi~~s 253 (271)
.. .+.+.+++|..........+-. ....++...++++ ......++.+.++.++++++++
T Consensus 181 ~~----~~~d~~llDt~G~~~~~~~~~~-eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~~~~~~~~~~~~~~t~iivT 255 (304)
T 1rj9_A 181 KA----RGYDLLFVDTAGRLHTKHNLME-ELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAVGLTGVIVT 255 (304)
T ss_dssp HH----HTCSEEEECCCCCCTTCHHHHH-HHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHHCCSEEEEE
T ss_pred Hh----CCCCEEEecCCCCCCchHHHHH-HHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHHHHHHHHHHHHcCCcEEEEE
Confidence 21 2456777885432210000000 0112222333322 1234455556667799999999
Q ss_pred ccc
Q 024152 254 QVF 256 (271)
Q Consensus 254 ql~ 256 (271)
|..
T Consensus 256 h~d 258 (304)
T 1rj9_A 256 KLD 258 (304)
T ss_dssp CTT
T ss_pred CCc
Confidence 974
No 79
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.91 E-value=1.6e-09 Score=104.34 Aligned_cols=72 Identities=24% Similarity=0.347 Sum_probs=56.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC---CCHHHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA---LDPSLAETIGVKTENLLLAQPDCGEQALSL 188 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~---~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~ 188 (271)
-+++|++++|+||||+|||||++.+++...+..|.|. +++... ....+++.+++.+|+..+++ .++.|++..
T Consensus 377 ~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~-~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~ 451 (598)
T 3qf4_B 377 HIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQIL-VDGIDIRKIKRSSLRSSIGIVLQDTILFS-TTVKENLKY 451 (598)
T ss_dssp ECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEE-ETTEEGGGSCHHHHHHHEEEECTTCCCCS-SBHHHHHHS
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEE-ECCEEhhhCCHHHHHhceEEEeCCCcccc-ccHHHHHhc
Confidence 5889999999999999999999999999999988854 444322 22356778999999987764 477776653
No 80
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=98.89 E-value=1.5e-09 Score=104.04 Aligned_cols=71 Identities=24% Similarity=0.313 Sum_probs=55.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC---CCHHHHHHcCCcCCcceecCCCCHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA---LDPSLAETIGVKTENLLLAQPDCGEQALS 187 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~---~~~~~~~~~g~~~~~~~~~~~~~~~e~~~ 187 (271)
-+++|++++|+||||+|||||++.+++...+..|.|. +++... ....+++.+++.+|+..+++. ++.|++.
T Consensus 363 ~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~-~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~ 436 (578)
T 4a82_A 363 SIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQIL-IDGHNIKDFLTGSLRNQIGLVQQDNILFSD-TVKENIL 436 (578)
T ss_dssp EECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEE-ETTEEGGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHG
T ss_pred EECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEE-ECCEEhhhCCHHHHhhheEEEeCCCccCcc-cHHHHHh
Confidence 5789999999999999999999999999999988854 444322 223567789999998777654 6666653
No 81
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.89 E-value=1.3e-09 Score=104.72 Aligned_cols=70 Identities=20% Similarity=0.220 Sum_probs=54.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC---CHHHHHHcCCcCCcceecCCCCHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLLLAQPDCGEQAL 186 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~---~~~~~~~~g~~~~~~~~~~~~~~~e~~ 186 (271)
-+++|++++|+||||+|||||++.+++...+.+|.|. +++.... ...+++.+++.+|+..+++. ++.|++
T Consensus 365 ~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~-i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni 437 (587)
T 3qf4_A 365 SVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVE-VDELDVRTVKLKDLRGHISAVPQETVLFSG-TIKENL 437 (587)
T ss_dssp EECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEE-ESSSBGGGBCHHHHHHHEEEECSSCCCCSE-EHHHHH
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEE-ECCEEcccCCHHHHHhheEEECCCCcCcCc-cHHHHH
Confidence 5789999999999999999999999999999988854 5543322 23567789999998776643 555554
No 82
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.89 E-value=8.1e-10 Score=97.68 Aligned_cols=42 Identities=24% Similarity=0.336 Sum_probs=37.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCC
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 156 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e 156 (271)
.+++|++++|+|+||+||||++..+++...+.+|+|.+.+.+
T Consensus 96 ~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d 137 (302)
T 3b9q_A 96 GFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGD 137 (302)
T ss_dssp CSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCC
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeec
Confidence 356899999999999999999999999999999998777654
No 83
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.86 E-value=1.5e-08 Score=94.69 Aligned_cols=89 Identities=16% Similarity=0.150 Sum_probs=60.7
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC------HHH--HHHcCCcCCcceecCCCCHHHHHH
Q 024152 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSL--AETIGVKTENLLLAQPDCGEQALS 187 (271)
Q Consensus 116 l~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~------~~~--~~~~g~~~~~~~~~~~~~~~e~~~ 187 (271)
+.+|++++|+|+||+|||||+..|++.+.+.+|.|.+.+...... ..+ +..+++.++........++.+.+.
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~ 369 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQ 369 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHH
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHH
Confidence 678999999999999999999999999999999987776543221 112 344667666543332233444444
Q ss_pred HHHHHHhcCCccEEEEcchhh
Q 024152 188 LVDTLIRSGSVDVVVVDSVAA 208 (271)
Q Consensus 188 ~~~~l~~~~~~~lvvID~l~~ 208 (271)
.+. ..+.++++||-...
T Consensus 370 ~a~----~~~~DvVLIDTaGr 386 (503)
T 2yhs_A 370 AAK----ARNIDVLIADTAGR 386 (503)
T ss_dssp HHH----HTTCSEEEECCCCS
T ss_pred HHH----hcCCCEEEEeCCCc
Confidence 432 24678888887544
No 84
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.86 E-value=1.7e-08 Score=90.12 Aligned_cols=132 Identities=18% Similarity=0.159 Sum_probs=77.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC------HHHHHHcCC--cCCcceecCCCCHHHHHHH
Q 024152 117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGV--KTENLLLAQPDCGEQALSL 188 (271)
Q Consensus 117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~------~~~~~~~g~--~~~~~~~~~~~~~~e~~~~ 188 (271)
++|++++|+|+||+||||++..+++...+.+|+|.+.+.+.... ..+++.+|+ .++.....+..++.+.+..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~ 206 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH 206 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence 58999999999999999999999999999999988877543221 123556664 3443333322334455444
Q ss_pred HHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHH--------------HHHHHHHHHHHhhcCcEEEEEcc
Q 024152 189 VDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLM--------------SQALRKLSHSLSLSQTILIFINQ 254 (271)
Q Consensus 189 ~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l--------------~~~~r~L~~lake~~~~Vi~~sq 254 (271)
... .+.+.+++|..........+ ........+.+ ......++.+.++.++++++++|
T Consensus 207 ~~~----~~~d~vliDtaG~~~~~~~l-----~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~~~~~~it~iilTK 277 (328)
T 3e70_C 207 AKA----RGIDVVLIDTAGRSETNRNL-----MDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQFNEAVKIDGIILTK 277 (328)
T ss_dssp HHH----HTCSEEEEEECCSCCTTTCH-----HHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHHHHHSCCCEEEEEC
T ss_pred HHh----ccchhhHHhhccchhHHHHH-----HHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 332 24667778864332110000 00000111111 12333445556678999999999
Q ss_pred ccc
Q 024152 255 VFS 257 (271)
Q Consensus 255 l~~ 257 (271)
+-.
T Consensus 278 lD~ 280 (328)
T 3e70_C 278 LDA 280 (328)
T ss_dssp GGG
T ss_pred cCC
Confidence 753
No 85
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.86 E-value=1.7e-09 Score=97.67 Aligned_cols=41 Identities=22% Similarity=0.291 Sum_probs=37.0
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCC
Q 024152 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 156 (271)
Q Consensus 116 l~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e 156 (271)
+++|++++|+|+||+||||++..+++...+.+|+|.+.+.+
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D 194 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGD 194 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCC
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEeccc
Confidence 56899999999999999999999999999999998777654
No 86
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.83 E-value=5.3e-10 Score=90.46 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=21.9
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALH 138 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ 138 (271)
-+++|++++|+|+||||||||++.
T Consensus 5 ~i~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 5 TIPELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEESSEEEEEECCTTSCHHHHHHH
T ss_pred cCCCCEEEEEECCCCCCHHHHHHH
Confidence 367999999999999999999993
No 87
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.79 E-value=2.3e-08 Score=79.16 Aligned_cols=92 Identities=21% Similarity=0.269 Sum_probs=63.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHh
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 194 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~ 194 (271)
.+ +|+.++|.|+||+|||||+..+++.+.+.+.+++|++....... .+.
T Consensus 33 ~~-~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~-----------------------------~~~- 81 (149)
T 2kjq_A 33 HK-HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT-----------------------------DAA- 81 (149)
T ss_dssp CC-CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC-----------------------------GGG-
T ss_pred hc-CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH-----------------------------HHH-
Confidence 45 89999999999999999999999998876556788876543321 111
Q ss_pred cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcE-EEEEcccc
Q 024152 195 SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTI-LIFINQVF 256 (271)
Q Consensus 195 ~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~-Vi~~sql~ 256 (271)
.+++++++|.+..+.+ . .++.+...+..+ .+.+.+ +|+++|..
T Consensus 82 -~~~~lLilDE~~~~~~---------~-----~~~~l~~li~~~----~~~g~~~iiits~~~ 125 (149)
T 2kjq_A 82 -FEAEYLAVDQVEKLGN---------E-----EQALLFSIFNRF----RNSGKGFLLLGSEYT 125 (149)
T ss_dssp -GGCSEEEEESTTCCCS---------H-----HHHHHHHHHHHH----HHHTCCEEEEEESSC
T ss_pred -hCCCEEEEeCccccCh---------H-----HHHHHHHHHHHH----HHcCCcEEEEECCCC
Confidence 2578999999876532 1 123343444433 455777 88888854
No 88
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.76 E-value=3.7e-08 Score=79.77 Aligned_cols=112 Identities=20% Similarity=0.202 Sum_probs=64.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCC-eEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGG-YCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 193 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g-~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~ 193 (271)
.+++|+.++|.||||+|||||+..+++.+.+..| .++|++....... +..... .. ... +.+ ..+
T Consensus 34 ~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~-------~~-~~~--~~~---~~~- 98 (180)
T 3ec2_A 34 NPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFR-LKHLMD-------EG-KDT--KFL---KTV- 98 (180)
T ss_dssp CGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHH-HHHHHH-------HT-CCS--HHH---HHH-
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH-HHHHhc-------Cc-hHH--HHH---HHh-
Confidence 4557999999999999999999999999986555 6666653221111 111100 00 000 111 111
Q ss_pred hcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccccc
Q 024152 194 RSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFSIN 259 (271)
Q Consensus 194 ~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~~~ 259 (271)
.+++++++|.+..... .. .....+.+.+. ...+.++++|+++|.....
T Consensus 99 --~~~~llilDE~~~~~~--------~~----~~~~~l~~ll~----~~~~~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 99 --LNSPVLVLDDLGSERL--------SD----WQRELISYIIT----YRYNNLKSTIITTNYSLQR 146 (180)
T ss_dssp --HTCSEEEEETCSSSCC--------CH----HHHHHHHHHHH----HHHHTTCEEEEECCCCSCC
T ss_pred --cCCCEEEEeCCCCCcC--------CH----HHHHHHHHHHH----HHHHcCCCEEEEcCCChhH
Confidence 2588999999864321 11 11122222222 2345789999999987554
No 89
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.72 E-value=2.4e-08 Score=103.73 Aligned_cols=72 Identities=21% Similarity=0.233 Sum_probs=56.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC---CCHHHHHHcCCcCCcceecCCCCHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA---LDPSLAETIGVKTENLLLAQPDCGEQALSL 188 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~---~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~ 188 (271)
-+++|++++|+||||||||||++.+++...+.+|.| ++++... ....+++.+++.+|+..++.. ++.|++.+
T Consensus 412 ~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i-~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eNi~~ 486 (1284)
T 3g5u_A 412 KVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMV-SIDGQDIRTINVRYLREIIGVVSQEPVLFAT-TIAENIRY 486 (1284)
T ss_dssp EECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEE-EETTEEGGGSCHHHHHHHEEEECSSCCCCSS-CHHHHHHH
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE-EECCEEHHhCCHHHHHhheEEEcCCCccCCc-cHHHHHhc
Confidence 578999999999999999999999999999988874 4554322 223567789999999877754 77766654
No 90
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.70 E-value=8.3e-09 Score=107.45 Aligned_cols=62 Identities=21% Similarity=0.342 Sum_probs=51.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC---CCHHHHHHcCCcCCcceec
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA---LDPSLAETIGVKTENLLLA 177 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~---~~~~~~~~~g~~~~~~~~~ 177 (271)
-+++|+.++|+||+|||||||+..+.+...+.+|. +++++... ....+++.+++.+|++.++
T Consensus 1101 ~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~-I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF 1165 (1321)
T 4f4c_A 1101 SVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGE-IFIDGSEIKTLNPEHTRSQIAIVSQEPTLF 1165 (1321)
T ss_dssp EECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSE-EEETTEETTTBCHHHHHTTEEEECSSCCCC
T ss_pred EECCCCEEEEECCCCChHHHHHHHHhcCccCCCCE-EEECCEEhhhCCHHHHHhheEEECCCCEee
Confidence 58899999999999999999999999999999998 55665432 2247788899999986554
No 91
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.70 E-value=1.3e-07 Score=91.02 Aligned_cols=36 Identities=22% Similarity=0.406 Sum_probs=32.2
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCe
Q 024152 114 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGY 149 (271)
Q Consensus 114 GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~ 149 (271)
|.+.+|++++|+|+||+|||||++.|++...+.+|.
T Consensus 373 G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~ 408 (608)
T 3j16_B 373 GEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQ 408 (608)
T ss_dssp EECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCC
T ss_pred CccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCc
Confidence 457788999999999999999999999999887663
No 92
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.65 E-value=9.1e-08 Score=82.69 Aligned_cols=40 Identities=23% Similarity=0.258 Sum_probs=35.8
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEcC
Q 024152 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDA 155 (271)
Q Consensus 116 l~~G~li~I~G~~G~GKTtl~~~ia~~~~~~-~g~v~~~~~ 155 (271)
+++|++++|+||||||||||++.+++...+. +|.+.+.+.
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~ 62 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIED 62 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEES
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCC
Confidence 5699999999999999999999999999887 888777654
No 93
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.64 E-value=2.1e-08 Score=104.50 Aligned_cols=62 Identities=19% Similarity=0.207 Sum_probs=50.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCC---CCCHHHHHHcCCcCCcceec
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH---ALDPSLAETIGVKTENLLLA 177 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~---~~~~~~~~~~g~~~~~~~~~ 177 (271)
-+++|++++|+||+|||||||+..+++...+.+|.| .+++.. .....+++.+++.+|+..++
T Consensus 440 ~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I-~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf 504 (1321)
T 4f4c_A 440 RVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKI-TIDGVDVRDINLEFLRKNVAVVSQEPALF 504 (1321)
T ss_dssp EECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEE-EETTEETTTSCHHHHHHHEEEECSSCCCC
T ss_pred eecCCcEEEEEecCCCcHHHHHHHhccccccccCcc-cCCCccchhccHHHHhhcccccCCcceee
Confidence 688999999999999999999999999999999984 455432 22346778899999886554
No 94
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=98.63 E-value=4e-09 Score=98.38 Aligned_cols=54 Identities=20% Similarity=0.207 Sum_probs=41.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCC-eEEEEcCCCCCCHHHHHHcCCcCCcc
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGG-YCVFIDAEHALDPSLAETIGVKTENL 174 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g-~v~~~~~e~~~~~~~~~~~g~~~~~~ 174 (271)
-+++|++++|.||||||||||++.+++...+.+| .+++++.. ..+.+++.+|..
T Consensus 134 ~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~------~~~~i~~vpq~~ 188 (460)
T 2npi_A 134 SNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD------PQQPIFTVPGCI 188 (460)
T ss_dssp HSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC------TTSCSSSCSSCC
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC------ccCCeeeeccch
Confidence 3559999999999999999999999999999888 74455542 123455666655
No 95
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.62 E-value=2.7e-07 Score=87.69 Aligned_cols=34 Identities=26% Similarity=0.307 Sum_probs=31.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCe
Q 024152 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGY 149 (271)
Q Consensus 116 l~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~ 149 (271)
+++|++++|+|+||||||||++.+++...++.|.
T Consensus 44 i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~ 77 (538)
T 1yqt_A 44 VKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCG 77 (538)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCc
Confidence 5699999999999999999999999998887775
No 96
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.62 E-value=9.9e-09 Score=95.15 Aligned_cols=53 Identities=17% Similarity=0.184 Sum_probs=45.0
Q ss_pred ccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEc
Q 024152 99 VVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID 154 (271)
Q Consensus 99 ~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~ 154 (271)
.+.||...||.+ - -+.+|++++|.|+||+|||||++.|++...++.|.+.+++
T Consensus 140 ~~~tg~~vld~v-l--~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G 192 (438)
T 2dpy_A 140 VLDTGVRAINAL-L--TVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIG 192 (438)
T ss_dssp BCCCSCHHHHHH-S--CCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEES
T ss_pred ecCCCceEEeee-E--EecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEec
Confidence 445788899999 4 6999999999999999999999999999888777544443
No 97
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.60 E-value=2.2e-08 Score=104.03 Aligned_cols=70 Identities=17% Similarity=0.292 Sum_probs=52.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC---HHHHHHcCCcCCcceecCCCCHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQAL 186 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~---~~~~~~~g~~~~~~~~~~~~~~~e~~ 186 (271)
-+++|++++|+||||+|||||++.+++...+.+|.| ++++..... +.+++.+++.+|+..++. .++.+++
T Consensus 1055 ~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I-~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~ti~eNi 1127 (1284)
T 3g5u_A 1055 EVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSV-FLDGKEIKQLNVQWLRAQLGIVSQEPILFD-CSIAENI 1127 (1284)
T ss_dssp EECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEE-ESSSSCTTSSCHHHHTTSCEEEESSCCCCS-SBHHHHH
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEE-EECCEEcccCCHHHHHhceEEECCCCcccc-ccHHHHH
Confidence 578999999999999999999999999999998885 455433221 345667889998875543 3444443
No 98
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.59 E-value=6.7e-08 Score=91.79 Aligned_cols=36 Identities=19% Similarity=0.182 Sum_probs=32.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeE
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYC 150 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v 150 (271)
-.++|++++|+||||+|||||++.|++...++.|.+
T Consensus 21 ~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i 56 (538)
T 3ozx_A 21 TPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDP 56 (538)
T ss_dssp CCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCT
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCcc
Confidence 456999999999999999999999999988887764
No 99
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.59 E-value=5e-08 Score=93.91 Aligned_cols=35 Identities=20% Similarity=0.261 Sum_probs=32.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeE
Q 024152 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYC 150 (271)
Q Consensus 116 l~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v 150 (271)
+++|++++|.||||+|||||++.|++...++.|.+
T Consensus 100 ~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i 134 (608)
T 3j16_B 100 PRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRF 134 (608)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTT
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceE
Confidence 56999999999999999999999999999888864
No 100
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.58 E-value=8.6e-08 Score=86.52 Aligned_cols=112 Identities=14% Similarity=0.081 Sum_probs=65.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHhc
Q 024152 117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRS 195 (271)
Q Consensus 117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~~~-~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~~ 195 (271)
.+|++++|+||||||||||++.+++...+. ++.++.+....... .....++..|........+..+.+ ++.+ .
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~--~~~~~~~v~q~~~~~~~~~~~~~L--a~aL--~ 194 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFV--HESKKCLVNQREVHRDTLGFSEAL--RSAL--R 194 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSC--CCCSSSEEEEEEBTTTBSCHHHHH--HHHT--T
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhh--hhccccceeeeeeccccCCHHHHH--HHHh--h
Confidence 478899999999999999999999999887 56655544321111 000111222211111223444422 2222 3
Q ss_pred CCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcccccc
Q 024152 196 GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFSI 258 (271)
Q Consensus 196 ~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~~ 258 (271)
.+++++++|.+... +. ...+.+ +.+.|.+|++++|....
T Consensus 195 ~~PdvillDEp~d~--------------------e~---~~~~~~-~~~~G~~vl~t~H~~~~ 233 (356)
T 3jvv_A 195 EDPDIILVGEMRDL--------------------ET---IRLALT-AAETGHLVFGTLHTTSA 233 (356)
T ss_dssp SCCSEEEESCCCSH--------------------HH---HHHHHH-HHHTTCEEEEEESCSSH
T ss_pred hCcCEEecCCCCCH--------------------HH---HHHHHH-HHhcCCEEEEEEccChH
Confidence 68999999997521 11 111222 23569999999998754
No 101
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.53 E-value=5.2e-07 Score=86.84 Aligned_cols=34 Identities=29% Similarity=0.323 Sum_probs=31.6
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCe
Q 024152 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGY 149 (271)
Q Consensus 116 l~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~ 149 (271)
+++|++++|.||||+|||||++.+++...++.|.
T Consensus 114 i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~ 147 (607)
T 3bk7_A 114 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCE 147 (607)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTT
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCc
Confidence 5699999999999999999999999998888776
No 102
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.50 E-value=3.3e-08 Score=96.37 Aligned_cols=22 Identities=41% Similarity=0.791 Sum_probs=20.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLA 136 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~ 136 (271)
-+++|++++|+||||||||||+
T Consensus 40 ~i~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 40 EIPRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp EEETTSEEEEECSTTSSHHHHH
T ss_pred EECCCCEEEEECCCCCCHHHHh
Confidence 5779999999999999999997
No 103
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=98.49 E-value=1.6e-07 Score=76.92 Aligned_cols=110 Identities=16% Similarity=0.171 Sum_probs=63.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC---HHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHh
Q 024152 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD---PSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 194 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~---~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~ 194 (271)
+|.++.+.|++|+||||+++.++.++...+.+++++....... ..+..+.|........ .+..+++..+
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r~~~~~i~s~~g~~~~~~~~---~~~~~~~~~~----- 73 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHVI---ERPEEMRKYI----- 73 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-----CCCEECC----CEECEEE---SSGGGGGGGC-----
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccccCcccEEecCCCceeeEEE---CCHHHHHHHh-----
Confidence 5789999999999999999999998887777888775331110 0111122222221111 1222222111
Q ss_pred cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccc
Q 024152 195 SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 195 ~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~ 257 (271)
..+.++++||++|.+.+ .....|..++++ +++|++.....+
T Consensus 74 ~~~~dvviIDE~Q~~~~---------------------~~~~~l~~l~~~-~~~Vi~~Gl~~~ 114 (184)
T 2orw_A 74 EEDTRGVFIDEVQFFNP---------------------SLFEVVKDLLDR-GIDVFCAGLDLT 114 (184)
T ss_dssp CTTEEEEEECCGGGSCT---------------------THHHHHHHHHHT-TCEEEEEEESBC
T ss_pred cCCCCEEEEECcccCCH---------------------HHHHHHHHHHHC-CCCEEEEeeccc
Confidence 13578999999998742 112233333555 999998877544
No 104
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.41 E-value=5.1e-07 Score=81.92 Aligned_cols=86 Identities=15% Similarity=0.172 Sum_probs=53.6
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHh
Q 024152 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 194 (271)
Q Consensus 116 l~~G~li~I~G~~G~GKTtl~~~ia~~~~~~-~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~ 194 (271)
+++|++++|+||||+|||||+..+++...+. +|.|++++..... .+....++.+|...-....... ..++..+.
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~--~~~~~~~~v~Q~~~g~~~~~~~---~~l~~~L~ 207 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEY--VFKHKKSIVNQREVGEDTKSFA---DALRAALR 207 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCS--CCCCSSSEEEEEEBTTTBSCSH---HHHHHHTT
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhh--hhccCceEEEeeecCCCHHHHH---HHHHHHhh
Confidence 5789999999999999999999999999887 7887777642211 1112233344311000111111 22222232
Q ss_pred cCCccEEEEcchh
Q 024152 195 SGSVDVVVVDSVA 207 (271)
Q Consensus 195 ~~~~~lvvID~l~ 207 (271)
.+++.+++|.+.
T Consensus 208 -~~pd~illdE~~ 219 (372)
T 2ewv_A 208 -EDPDVIFVGEMR 219 (372)
T ss_dssp -SCCSEEEESCCC
T ss_pred -hCcCEEEECCCC
Confidence 479999999865
No 105
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.40 E-value=4.6e-07 Score=80.05 Aligned_cols=75 Identities=16% Similarity=0.107 Sum_probs=55.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHHh--hcCCeEEEEcCCCC-CCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHH
Q 024152 117 PKGRVVEIYGPEASGKTTLALHVIAEAQ--RQGGYCVFIDAEHA-LDPSLAETIGVKTENLLLAQPDCGEQALSLVDTL 192 (271)
Q Consensus 117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~--~~~g~v~~~~~e~~-~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l 192 (271)
.+|++++|.|+||||||||+..+++... +.+|.|.+++.... ......+..++. +........+..+++..+..+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l 155 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQVLKERGLM-KKKGFPESYDMHRLVKFVSDL 155 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHHHHTCT-TCTTSGGGBCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCcHHHHHhCCEe-ecCCCCCCccHHHHHHHHHHH
Confidence 6899999999999999999999999988 78888777654322 222334556776 655555566888887766554
No 106
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.39 E-value=1.8e-07 Score=83.49 Aligned_cols=39 Identities=23% Similarity=0.294 Sum_probs=34.0
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEc
Q 024152 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID 154 (271)
Q Consensus 116 l~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~ 154 (271)
+++|++++|+|+||+|||||++.+++...+..|.+.+-+
T Consensus 168 i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~ 206 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIED 206 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEES
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECC
Confidence 458999999999999999999999999988888755544
No 107
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.37 E-value=1.3e-07 Score=75.55 Aligned_cols=67 Identities=18% Similarity=0.114 Sum_probs=44.9
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQAL 186 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~ 186 (271)
-+++|++++|.||||+|||||++.+++.. +..|.|.+.+ ...... .. ...+.+|+..++ ..++.+.+
T Consensus 29 ~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g-~~i~~~-~~-~~~~~~q~~~l~-~ltv~e~l 95 (158)
T 1htw_A 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPT-YTLVEE-YN-IAGKMIYHFDLY-RLADPEEL 95 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCT-TTCEEE-EE-ETTEEEEEEECT-TCSCTTHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECC-Eeeeee-cc-CCCcceeccccc-cCCcHHHH
Confidence 57799999999999999999999999999 8878754332 221111 00 012566766666 45554433
No 108
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.37 E-value=7.7e-06 Score=72.18 Aligned_cols=89 Identities=18% Similarity=0.166 Sum_probs=55.8
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCH------HHHHHcCCcCCcceecCCCCHHHHHH-H
Q 024152 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP------SLAETIGVKTENLLLAQPDCGEQALS-L 188 (271)
Q Consensus 116 l~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~------~~~~~~g~~~~~~~~~~~~~~~e~~~-~ 188 (271)
..+|++++|+|+||+||||++.++++.+.+.+++|.+++.+..... .+....++.. +......+...+.. .
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~--~~~~s~~~~~~v~~~a 178 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATV--ISHSEGADPAAVAFDA 178 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEE--ECCSTTCCHHHHHHHH
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcE--EecCCccCHHHHHHHH
Confidence 3578999999999999999999999999998889888876532211 2333444432 11111122333211 1
Q ss_pred HHHHHhcCCccEEEEcchh
Q 024152 189 VDTLIRSGSVDVVVVDSVA 207 (271)
Q Consensus 189 ~~~l~~~~~~~lvvID~l~ 207 (271)
+.+. ...+++++++|...
T Consensus 179 l~~a-~~~~~dvvIiDtpg 196 (306)
T 1vma_A 179 VAHA-LARNKDVVIIDTAG 196 (306)
T ss_dssp HHHH-HHTTCSEEEEEECC
T ss_pred HHHH-HhcCCCEEEEECCC
Confidence 1111 23578999999754
No 109
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.36 E-value=5.7e-08 Score=79.99 Aligned_cols=29 Identities=34% Similarity=0.431 Sum_probs=27.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHHhhcCC
Q 024152 119 GRVVEIYGPEASGKTTLALHVIAEAQRQGG 148 (271)
Q Consensus 119 G~li~I~G~~G~GKTtl~~~ia~~~~~~~g 148 (271)
|++++|.|+||+|||||+..+++... ..|
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G 29 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG 29 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC
Confidence 68999999999999999999999988 666
No 110
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.35 E-value=8.5e-07 Score=89.13 Aligned_cols=27 Identities=33% Similarity=0.516 Sum_probs=25.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIA 141 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~ 141 (271)
-+++|++++|.||||+|||||++.|++
T Consensus 457 ~I~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 457 RLKRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 577999999999999999999999995
No 111
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.34 E-value=4.9e-07 Score=80.92 Aligned_cols=70 Identities=13% Similarity=0.013 Sum_probs=50.8
Q ss_pred HHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC------HHHHHHcCCcCCcceec
Q 024152 106 ALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD------PSLAETIGVKTENLLLA 177 (271)
Q Consensus 106 ~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~------~~~~~~~g~~~~~~~~~ 177 (271)
.|+.+.- -+++|++++|.|+||+|||||++.+++...+.+|+|.+++.+.... ......+++.+|....+
T Consensus 44 ~l~~i~~--~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~ 119 (337)
T 2qm8_A 44 LIDAVLP--QTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAF 119 (337)
T ss_dssp HHHHHGG--GCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEE
T ss_pred HHHhCCc--ccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccc
Confidence 4555543 5679999999999999999999999999999999988876432110 11234577777765444
No 112
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.34 E-value=2.8e-06 Score=77.49 Aligned_cols=118 Identities=18% Similarity=0.250 Sum_probs=68.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHh
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 194 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~ 194 (271)
|+++..=+++.||||+|||.|++.+|.... -+.+.++....... ..-..+..+..+....+
T Consensus 178 gi~~prGvLL~GPPGTGKTllAkAiA~e~~---~~f~~v~~s~l~sk----------------~vGese~~vr~lF~~Ar 238 (405)
T 4b4t_J 178 GIAQPKGVILYGPPGTGKTLLARAVAHHTD---CKFIRVSGAELVQK----------------YIGEGSRMVRELFVMAR 238 (405)
T ss_dssp TCCCCCCEEEESCSSSSHHHHHHHHHHHHT---CEEEEEEGGGGSCS----------------STTHHHHHHHHHHHHHH
T ss_pred CCCCCCceEEeCCCCCCHHHHHHHHHHhhC---CCceEEEhHHhhcc----------------ccchHHHHHHHHHHHHH
Confidence 677777799999999999999999998764 23444443211110 01122333333333344
Q ss_pred cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcc
Q 024152 195 SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQ 254 (271)
Q Consensus 195 ~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sq 254 (271)
...+..++||.+..+.+...-....+.. ...+.+.+.+..+..+....++.||+.+.
T Consensus 239 ~~aP~IIFiDEiDai~~~R~~~~~~~~~---~~~~~l~~lL~~lDg~~~~~~V~vIaATN 295 (405)
T 4b4t_J 239 EHAPSIIFMDEIDSIGSTRVEGSGGGDS---EVQRTMLELLNQLDGFETSKNIKIIMATN 295 (405)
T ss_dssp HTCSEEEEEESSSCCTTSCSCSSSGGGG---HHHHHHHHHHHHHHTTTCCCCEEEEEEES
T ss_pred HhCCceEeeecchhhccCCCCCCCCCcH---HHHHHHHHHHHhhhccCCCCCeEEEeccC
Confidence 5679999999998876533222111111 22345566666665444445655665543
No 113
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.33 E-value=1.7e-06 Score=70.31 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=22.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 024152 121 VVEIYGPEASGKTTLALHVIAEAQ 144 (271)
Q Consensus 121 li~I~G~~G~GKTtl~~~ia~~~~ 144 (271)
.++|.||||+|||||++.+++...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999885
No 114
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.33 E-value=2.7e-06 Score=74.79 Aligned_cols=103 Identities=18% Similarity=0.131 Sum_probs=65.4
Q ss_pred cCcHHHHHHhcCCCCCC-------CcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCH------HHHHHcC
Q 024152 102 TGSFALDIALGTGGLPK-------GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP------SLAETIG 168 (271)
Q Consensus 102 Tg~~~LD~~l~~GGl~~-------G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~------~~~~~~g 168 (271)
....+|+..++ ++..+ |.++++.|+||+||||++.+++..+++.+++|++++.+..... .+....+
T Consensus 75 ~~~~~l~~~~~-~~~~~~i~~~~~~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~ 153 (297)
T 1j8m_F 75 IVYDELSNLFG-GDKEPKVIPDKIPYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIG 153 (297)
T ss_dssp HHHHHHHHHTT-CSCCCCCSCSSSSEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhc-cccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCC
Confidence 45566666665 33222 8899999999999999999999999998889999987643321 1233444
Q ss_pred CcCCcceecCCCCHHHHHHHHHHHHhcCCccEEEEcchh
Q 024152 169 VKTENLLLAQPDCGEQALSLVDTLIRSGSVDVVVVDSVA 207 (271)
Q Consensus 169 ~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~lvvID~l~ 207 (271)
++.-. .....+..+++..+.......+.++++||...
T Consensus 154 v~v~~--~~~~~~p~~~~~~~l~~~~~~~~D~ViIDTpg 190 (297)
T 1j8m_F 154 VPVYG--EPGEKDVVGIAKRGVEKFLSEKMEIIIVDTAG 190 (297)
T ss_dssp CCEEC--CTTCCCHHHHHHHHHHHHHHTTCSEEEEECCC
T ss_pred eEEEe--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 43211 01123455554322222323578999999743
No 115
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.29 E-value=4.4e-06 Score=74.67 Aligned_cols=93 Identities=19% Similarity=0.212 Sum_probs=56.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHhhc---CCeEEEEcCCCCCCH-HHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQ---GGYCVFIDAEHALDP-SLAETIGVKTENLLLAQPDCGEQALSLVDTLI 193 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~---~g~v~~~~~e~~~~~-~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~ 193 (271)
.+..+.|.|+||+|||||+..++...... +..+++++....... .....+.-...........+..++...+....
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 123 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAV 123 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHH
Confidence 57799999999999999999999988765 456777764322121 11222111110000011234556555555444
Q ss_pred hcC-CccEEEEcchhhhc
Q 024152 194 RSG-SVDVVVVDSVAALV 210 (271)
Q Consensus 194 ~~~-~~~lvvID~l~~~~ 210 (271)
... .+.+++||.++.+.
T Consensus 124 ~~~~~~~vlilDE~~~l~ 141 (386)
T 2qby_A 124 RDYGSQVVIVLDEIDAFV 141 (386)
T ss_dssp HTCCSCEEEEEETHHHHH
T ss_pred hccCCeEEEEEcChhhhh
Confidence 433 37899999998875
No 116
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.28 E-value=8.2e-06 Score=70.45 Aligned_cols=120 Identities=18% Similarity=0.205 Sum_probs=64.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHh
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 194 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~ 194 (271)
|+.++.-+.|.||||+|||+++..++... +.++++++....... ........+........
T Consensus 47 ~~~~~~~~ll~G~~GtGKT~la~~la~~~---~~~~~~v~~~~~~~~----------------~~~~~~~~~~~~~~~~~ 107 (285)
T 3h4m_A 47 GIEPPKGILLYGPPGTGKTLLAKAVATET---NATFIRVVGSELVKK----------------FIGEGASLVKDIFKLAK 107 (285)
T ss_dssp CCCCCSEEEEESSSSSSHHHHHHHHHHHT---TCEEEEEEGGGGCCC----------------STTHHHHHHHHHHHHHH
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEehHHHHHh----------------ccchHHHHHHHHHHHHH
Confidence 67788889999999999999999998764 345555543221110 00111222222222233
Q ss_pred cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcccc
Q 024152 195 SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVF 256 (271)
Q Consensus 195 ~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~ 256 (271)
...+.+++||.+..+.+...-....+.. ..++.+...+..+..+....++.||+++...
T Consensus 108 ~~~~~vl~iDEid~l~~~~~~~~~~~~~---~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~ 166 (285)
T 3h4m_A 108 EKAPSIIFIDEIDAIAAKRTDALTGGDR---EVQRTLMQLLAEMDGFDARGDVKIIGATNRP 166 (285)
T ss_dssp HTCSEEEEEETTHHHHBCCSSSCCGGGG---HHHHHHHHHHHHHHTTCSSSSEEEEEECSCG
T ss_pred HcCCeEEEEECHHHhcccCccccCCccH---HHHHHHHHHHHHhhCCCCCCCEEEEEeCCCc
Confidence 4567899999998886422211111111 2223343444433222223466677776543
No 117
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.28 E-value=5.3e-06 Score=76.45 Aligned_cols=118 Identities=19% Similarity=0.248 Sum_probs=69.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHh
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 194 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~ 194 (271)
|+++..=+++.||||+|||+|++.+|..+. -+.+.++....... ..-..+..+..+....+
T Consensus 202 g~~~prGiLL~GPPGtGKT~lakAiA~~~~---~~~~~v~~~~l~~~----------------~~Ge~e~~ir~lF~~A~ 262 (428)
T 4b4t_K 202 GIDPPRGVLLYGPPGTGKTMLVKAVANSTK---AAFIRVNGSEFVHK----------------YLGEGPRMVRDVFRLAR 262 (428)
T ss_dssp CCCCCCEEEEESCTTTTHHHHHHHHHHHHT---CEEEEEEGGGTCCS----------------SCSHHHHHHHHHHHHHH
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHhC---CCeEEEecchhhcc----------------ccchhHHHHHHHHHHHH
Confidence 678888899999999999999999998764 34455543221110 01112222222222333
Q ss_pred cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcc
Q 024152 195 SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQ 254 (271)
Q Consensus 195 ~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sq 254 (271)
...+..+++|.+..+.+...-....+.. ...+.+.+.+..+..+....++.||+++.
T Consensus 263 ~~aP~IifiDEiD~i~~~R~~~~~~~~~---~~~r~l~~lL~~ldg~~~~~~v~vI~aTN 319 (428)
T 4b4t_K 263 ENAPSIIFIDEVDSIATKRFDAQTGSDR---EVQRILIELLTQMDGFDQSTNVKVIMATN 319 (428)
T ss_dssp HTCSEEEEEECTHHHHCSCSSSCSCCCC---HHHHHHHHHHHHHHHSCSSCSEEEEEEES
T ss_pred HcCCCeeechhhhhhhccccCCCCCCCh---HHHHHHHHHHHHhhCCCCCCCEEEEEecC
Confidence 5679999999998876533221111111 22345666666666555556666776654
No 118
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.27 E-value=5.7e-06 Score=75.96 Aligned_cols=117 Identities=19% Similarity=0.200 Sum_probs=67.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHh
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 194 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~ 194 (271)
|+++..=++|+||||+|||.|++.+|..... +.+.++...... ...-..+.++..+....+
T Consensus 212 Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~---~fi~v~~s~l~s----------------k~vGesek~ir~lF~~Ar 272 (437)
T 4b4t_I 212 GIKPPKGVILYGAPGTGKTLLAKAVANQTSA---TFLRIVGSELIQ----------------KYLGDGPRLCRQIFKVAG 272 (437)
T ss_dssp TCCCCSEEEEESSTTTTHHHHHHHHHHHHTC---EEEEEESGGGCC----------------SSSSHHHHHHHHHHHHHH
T ss_pred CCCCCCCCceECCCCchHHHHHHHHHHHhCC---CEEEEEHHHhhh----------------ccCchHHHHHHHHHHHHH
Confidence 7888888999999999999999999987652 344444321111 111123333333333344
Q ss_pred cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEc
Q 024152 195 SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFIN 253 (271)
Q Consensus 195 ~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~s 253 (271)
...+.+++||.+..+.+...-....+.. ...+.+...+..+..+....++-||+++
T Consensus 273 ~~aP~IIfiDEiDai~~~R~~~~~~~~~---~~~~~l~~LL~~lDg~~~~~~ViVIaAT 328 (437)
T 4b4t_I 273 ENAPSIVFIDEIDAIGTKRYDSNSGGER---EIQRTMLELLNQLDGFDDRGDVKVIMAT 328 (437)
T ss_dssp HTCSEEEEEEEESSSSCCCSCSSCSSCC---HHHHHHHHHHHHHHHCCCSSSEEEEEEE
T ss_pred hcCCcEEEEehhhhhcccCCCCCCCccH---HHHHHHHHHHHHhhCcCCCCCEEEEEeC
Confidence 5679999999998876533222221221 2234455555555443334455555554
No 119
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.27 E-value=1e-05 Score=72.62 Aligned_cols=88 Identities=15% Similarity=0.152 Sum_probs=57.1
Q ss_pred CCc--EEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEcCCCCCCH-----HHHHHcCCcCCcceecCCCCHHHHHHHH
Q 024152 118 KGR--VVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHALDP-----SLAETIGVKTENLLLAQPDCGEQALSLV 189 (271)
Q Consensus 118 ~G~--li~I~G~~G~GKTtl~~~ia~~~~~~-~g~v~~~~~e~~~~~-----~~~~~~g~~~~~~~~~~~~~~~e~~~~~ 189 (271)
.+. .+.|.||||+|||||+..++...... +..+++++....... .+...++.... ....+..++...+
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~----~~~~~~~~~~~~l 116 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFP----RRGLSRDEFLALL 116 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCC----SSCCCHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCC----CCCCCHHHHHHHH
Confidence 445 89999999999999999999988766 457788875443332 22333433211 1123455655555
Q ss_pred HHHHh-cCCccEEEEcchhhh
Q 024152 190 DTLIR-SGSVDVVVVDSVAAL 209 (271)
Q Consensus 190 ~~l~~-~~~~~lvvID~l~~~ 209 (271)
..... ..++.+++||.++.+
T Consensus 117 ~~~l~~~~~~~vlilDE~~~l 137 (389)
T 1fnn_A 117 VEHLRERDLYMFLVLDDAFNL 137 (389)
T ss_dssp HHHHHHTTCCEEEEEETGGGS
T ss_pred HHHHhhcCCeEEEEEECcccc
Confidence 44433 345789999998876
No 120
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=98.25 E-value=1.5e-07 Score=78.59 Aligned_cols=58 Identities=24% Similarity=0.237 Sum_probs=40.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcc
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENL 174 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~ 174 (271)
++++|++++|.||||+|||||++.+++. .++.|.|......... ..+.+.+++.+|+.
T Consensus 18 ~i~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~-~~~~~~ig~v~q~~ 75 (208)
T 3b85_A 18 AIDTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPA-VEAGEKLGFLPGTL 75 (208)
T ss_dssp HHHHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECS-CCTTCCCCSSCC--
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCc-hhhhcceEEecCCH
Confidence 4569999999999999999999999999 8888876331111111 11234577777754
No 121
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.25 E-value=3.5e-06 Score=77.75 Aligned_cols=118 Identities=19% Similarity=0.211 Sum_probs=66.5
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152 114 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 193 (271)
Q Consensus 114 GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~ 193 (271)
.|+++..=++++||||+|||+|++.+|.... -+.+.++...... ...-..+.++..+....
T Consensus 210 ~g~~~prGvLLyGPPGTGKTllAkAiA~e~~---~~f~~v~~s~l~~----------------~~vGese~~ir~lF~~A 270 (434)
T 4b4t_M 210 MGIRAPKGALMYGPPGTGKTLLARACAAQTN---ATFLKLAAPQLVQ----------------MYIGEGAKLVRDAFALA 270 (434)
T ss_dssp HCCCCCCEEEEESCTTSSHHHHHHHHHHHHT---CEEEEEEGGGGCS----------------SCSSHHHHHHHHHHHHH
T ss_pred CCCCCCCeeEEECcCCCCHHHHHHHHHHHhC---CCEEEEehhhhhh----------------cccchHHHHHHHHHHHH
Confidence 3788888899999999999999999998764 2344444321111 00111233333333333
Q ss_pred hcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEc
Q 024152 194 RSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFIN 253 (271)
Q Consensus 194 ~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~s 253 (271)
+...+.+++||.+..+.+...-....+.. ...+.+...+..+..+....++.||+++
T Consensus 271 ~~~aP~IifiDEiDal~~~R~~~~~~~~~---~~~~~~~~lL~~ldg~~~~~~ViVIaaT 327 (434)
T 4b4t_M 271 KEKAPTIIFIDELDAIGTKRFDSEKSGDR---EVQRTMLELLNQLDGFSSDDRVKVLAAT 327 (434)
T ss_dssp HHHCSEEEEEECTHHHHCCCSSGGGGTTH---HHHHHHHHHHHHHTTSCSSCSSEEEEEC
T ss_pred HhcCCeEEeecchhhhhhccCCCCCCCch---HHHHHHHHHHHHhhccCCCCCEEEEEeC
Confidence 34578999999998876533221111111 2233445555555433334456666554
No 122
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.24 E-value=6.6e-07 Score=80.43 Aligned_cols=53 Identities=23% Similarity=0.159 Sum_probs=45.0
Q ss_pred ccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEc
Q 024152 99 VVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID 154 (271)
Q Consensus 99 ~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~ 154 (271)
.+.||+..||.++ -+.+|++++|.|+||+|||||+++|++...++.+.+.+++
T Consensus 54 ~~~tg~~ald~ll---~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G 106 (347)
T 2obl_A 54 PFILGVRAIDGLL---TCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIG 106 (347)
T ss_dssp EECCSCHHHHHHS---CEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEES
T ss_pred ecCCCCEEEEeee---eecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEec
Confidence 4557899999995 6999999999999999999999999999887766544443
No 123
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=98.23 E-value=3.9e-06 Score=69.06 Aligned_cols=110 Identities=17% Similarity=0.212 Sum_probs=66.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC---CHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152 117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 193 (271)
Q Consensus 117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~---~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~ 193 (271)
.+|.++.+.|+.|+||||.++.++.++...+.+|+++...... ...+.++.|+.......... ++++..+
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~---~~i~~~~---- 78 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNS---REILKYF---- 78 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTTSCEEECEEESSS---THHHHHC----
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhhcCCceeeEeeCCH---HHHHHHH----
Confidence 4689999999999999999999999998777788877421111 11122233433222222221 2333321
Q ss_pred hcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcccc
Q 024152 194 RSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVF 256 (271)
Q Consensus 194 ~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~ 256 (271)
....++|+||..|.+.+ .+.+.++.+ +.+ +++||+...-.
T Consensus 79 -~~~~dvViIDEaqfl~~------------------~~v~~l~~l---~~~-~~~Vi~~Gl~~ 118 (191)
T 1xx6_A 79 -EEDTEVIAIDEVQFFDD------------------EIVEIVNKI---AES-GRRVICAGLDM 118 (191)
T ss_dssp -CTTCSEEEECSGGGSCT------------------HHHHHHHHH---HHT-TCEEEEEECSB
T ss_pred -hccCCEEEEECCCCCCH------------------HHHHHHHHH---HhC-CCEEEEEeccc
Confidence 12579999999998642 112333333 444 99999986533
No 124
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.23 E-value=6.8e-06 Score=75.88 Aligned_cols=118 Identities=22% Similarity=0.253 Sum_probs=67.5
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152 114 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 193 (271)
Q Consensus 114 GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~ 193 (271)
.|+++..=++|+||||+|||+|++.+|.... -+.++++....... ..-..+.++..+....
T Consensus 210 ~g~~~prGvLL~GPPGtGKTllAkAiA~e~~---~~~~~v~~s~l~sk----------------~~Gese~~ir~~F~~A 270 (437)
T 4b4t_L 210 VGIKPPKGVLLYGPPGTGKTLLAKAVAATIG---ANFIFSPASGIVDK----------------YIGESARIIREMFAYA 270 (437)
T ss_dssp HCCCCCCEEEEESCTTSSHHHHHHHHHHHHT---CEEEEEEGGGTCCS----------------SSSHHHHHHHHHHHHH
T ss_pred CCCCCCCeEEEECCCCCcHHHHHHHHHHHhC---CCEEEEehhhhccc----------------cchHHHHHHHHHHHHH
Confidence 3788888999999999999999999998764 34454543222110 0112233333333334
Q ss_pred hcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEc
Q 024152 194 RSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFIN 253 (271)
Q Consensus 194 ~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~s 253 (271)
....+.+++||.+-.+.+...-.+..+.. ...+.+...+..+..+....++.||+++
T Consensus 271 ~~~~P~IifiDEiDai~~~R~~~~~~~~~---~~~~~l~~lL~~lDg~~~~~~vivI~AT 327 (437)
T 4b4t_L 271 KEHEPCIIFMDEVDAIGGRRFSEGTSADR---EIQRTLMELLTQMDGFDNLGQTKIIMAT 327 (437)
T ss_dssp HHSCSEEEEEECCCSSSCCCSSSCCSSTT---HHHHHHHHHHHHHHSSSCTTSSEEEEEE
T ss_pred HhcCCceeeeecccccccccccCCCCcch---HHHHHHHHHHHHhhcccCCCCeEEEEec
Confidence 45689999999998876533222211111 2233445555555433333455566554
No 125
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=98.19 E-value=4.6e-06 Score=69.68 Aligned_cols=110 Identities=15% Similarity=0.196 Sum_probs=65.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC---CHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152 117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 193 (271)
Q Consensus 117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~---~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~ 193 (271)
.+|.++.+.|+.|+||||.++..+.++...+.+|+++...... ...+.++.|+......... .++++.. .
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~R~ge~~i~s~~g~~~~a~~~~~---~~~~~~~----~ 98 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYSEEDVVSHNGLKVKAVPVSA---SKDIFKH----I 98 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-----------------CCEEECSS---GGGGGGG----C
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCCcchHHHHHhhcCCeeEEeecCC---HHHHHHH----H
Confidence 4789999999999999999999999999888888887532111 1134455565544333221 1222221 1
Q ss_pred hcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcccc
Q 024152 194 RSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVF 256 (271)
Q Consensus 194 ~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~ 256 (271)
....++|+||..|.+.+ ..+ +.++.+ +. .+++||+.....
T Consensus 99 -~~~~dvViIDEaQF~~~-----------------~~V-~~l~~l---~~-~~~~Vi~~Gl~~ 138 (214)
T 2j9r_A 99 -TEEMDVIAIDEVQFFDG-----------------DIV-EVVQVL---AN-RGYRVIVAGLDQ 138 (214)
T ss_dssp -CSSCCEEEECCGGGSCT-----------------THH-HHHHHH---HH-TTCEEEEEECSB
T ss_pred -hcCCCEEEEECcccCCH-----------------HHH-HHHHHH---hh-CCCEEEEEeccc
Confidence 12589999999998742 011 334443 44 499999987643
No 126
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.16 E-value=6e-06 Score=73.34 Aligned_cols=42 Identities=17% Similarity=0.142 Sum_probs=38.0
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCC
Q 024152 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH 157 (271)
Q Consensus 116 l~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~ 157 (271)
.++|+++.|+|+||+||||++.++++.+++.+++|++++...
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~ 143 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADT 143 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 458999999999999999999999999999889999988654
No 127
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.16 E-value=1e-06 Score=71.49 Aligned_cols=38 Identities=21% Similarity=0.182 Sum_probs=30.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcC
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 155 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~ 155 (271)
++++|++++|.|+|||||||+++.+++. +..|. ++++.
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~-i~i~~ 42 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPK-VHFHS 42 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCE-EEECT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCe-EEEcc
Confidence 5889999999999999999999999886 44454 55554
No 128
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.15 E-value=2.8e-06 Score=85.33 Aligned_cols=29 Identities=24% Similarity=0.165 Sum_probs=25.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
++++|++++|.||||+|||||+++++...
T Consensus 658 ~~~~g~i~~ItGpNGsGKSTlLr~ial~~ 686 (934)
T 3thx_A 658 EKDKQMFHIITGPNMGGKSTYIRQTGVIV 686 (934)
T ss_dssp ETTTBCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ecCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999996543
No 129
>2r5u_A Replicative DNA helicase; DNAB, primase, replication, ATP-binding, autocatal cleavage, DNA replication, DNA-binding, endonuclease; 1.90A {Mycobacterium tuberculosis}
Probab=98.15 E-value=7.8e-08 Score=79.88 Aligned_cols=74 Identities=16% Similarity=0.223 Sum_probs=41.2
Q ss_pred hhhhhhhhhhhhhhhcCCCCCCCCcccccccccc-cccccccccccccccCCCCCCccccCcchHHHHHHHHHHHHHHhc
Q 024152 2 ASLLRNASLLRRCLLSVSPPHPHPQSFRGGMLET-STQICNFSSKSKRKSKSDGSDSGEENMSKKDLALQQALDQITSSF 80 (271)
Q Consensus 2 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (271)
|+||++++++|+|+.. +.++...+|... ..+++++++.||+++|++++.....++.++++++.++++.|++.+
T Consensus 123 a~iV~e~~~~R~li~~------~~~i~~~a~~~~~~~~~~~~ld~ae~~l~~i~~~~~~~~~~~i~~~l~~~~~~ie~~~ 196 (200)
T 2r5u_A 123 ASIVAEKALLRRLVEA------GTRVVQYGYAGAEGADVAEVVDRAQAEIYDVADRRLSEDFVALEDLLQPTMDEIDAIA 196 (200)
T ss_dssp HHHHHHHHHHHHHHHH------HHHHHHHHHHCSTTCCHHHHHHHHHHHHHTC---------------------------
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHhhCCccCCCHHHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHHH
Confidence 7899999999999998 888888888665 248999999999999999998877889999999999999998765
Q ss_pred C
Q 024152 81 G 81 (271)
Q Consensus 81 ~ 81 (271)
.
T Consensus 197 ~ 197 (200)
T 2r5u_A 197 S 197 (200)
T ss_dssp -
T ss_pred h
Confidence 4
No 130
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.14 E-value=1.3e-05 Score=74.33 Aligned_cols=117 Identities=17% Similarity=0.225 Sum_probs=65.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHh
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 194 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~ 194 (271)
|+++..=++|.||||+|||+|++.+|..+.. +.+.++...... ...-..+.++..+....+
T Consensus 239 Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~---~fi~vs~s~L~s----------------k~vGesek~ir~lF~~Ar 299 (467)
T 4b4t_H 239 GIDPPKGILLYGPPGTGKTLCARAVANRTDA---TFIRVIGSELVQ----------------KYVGEGARMVRELFEMAR 299 (467)
T ss_dssp TCCCCSEEEECSCTTSSHHHHHHHHHHHHTC---EEEEEEGGGGCC----------------CSSSHHHHHHHHHHHHHH
T ss_pred CCCCCCceEeeCCCCCcHHHHHHHHHhccCC---CeEEEEhHHhhc----------------ccCCHHHHHHHHHHHHHH
Confidence 7888889999999999999999999987642 344444321111 001122333333333344
Q ss_pred cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEc
Q 024152 195 SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFIN 253 (271)
Q Consensus 195 ~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~s 253 (271)
...+.++++|.+..+.+...-.+. +... ...+.+...+..+..+....++.||+++
T Consensus 300 ~~aP~IIfiDEiDai~~~R~~~~~-~~~~--~~~~~l~~lL~~lDg~~~~~~ViVIaAT 355 (467)
T 4b4t_H 300 TKKACIIFFDEIDAVGGARFDDGA-GGDN--EVQRTMLELITQLDGFDPRGNIKVMFAT 355 (467)
T ss_dssp HTCSEEEEEECCTTTSBCCSSSSC-GGGG--HHHHHHHHHHHHHHSSCCTTTEEEEEEC
T ss_pred hcCCceEeecccccccccccCcCC-CccH--HHHHHHHHHHHHhhccCCCCcEEEEeCC
Confidence 567999999999887643222211 1111 2233444555555333333455555543
No 131
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.14 E-value=1.2e-06 Score=73.45 Aligned_cols=35 Identities=29% Similarity=0.413 Sum_probs=28.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEE
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVF 152 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~ 152 (271)
-+++|++++|+||||+|||||++.+++.. + |.+.+
T Consensus 19 ~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~ 53 (218)
T 1z6g_A 19 SMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF 53 (218)
T ss_dssp ---CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE
T ss_pred ecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE
Confidence 56699999999999999999999999987 4 65444
No 132
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.13 E-value=1.5e-06 Score=78.42 Aligned_cols=88 Identities=16% Similarity=0.140 Sum_probs=50.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcC-Cccee--cCCCCHHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKT-ENLLL--AQPDCGEQALSLVDT 191 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~-~~~~~--~~~~~~~e~~~~~~~ 191 (271)
-+++|++++|+|++|+|||||++.+++...+..|.|.+-+............+++.+ |+... +...+..+++..+.
T Consensus 171 ~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l- 249 (361)
T 2gza_A 171 AVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCL- 249 (361)
T ss_dssp HHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHT-
T ss_pred HHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHH-
Confidence 345999999999999999999999999988888865544322111111222344444 33222 12345555554432
Q ss_pred HHhcCCccEEEEcch
Q 024152 192 LIRSGSVDVVVVDSV 206 (271)
Q Consensus 192 l~~~~~~~lvvID~l 206 (271)
...++.++++.+
T Consensus 250 ---~~~pd~~l~~e~ 261 (361)
T 2gza_A 250 ---RMKPTRILLAEL 261 (361)
T ss_dssp ---TSCCSEEEESCC
T ss_pred ---hcCCCEEEEcCc
Confidence 235667766654
No 133
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.13 E-value=2.2e-05 Score=78.76 Aligned_cols=30 Identities=27% Similarity=0.319 Sum_probs=26.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHh
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQ 144 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~ 144 (271)
.+++|++++|.||||+|||||+++++....
T Consensus 669 ~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~ 698 (918)
T 3thx_B 669 SEDSERVMIITGPNMGGKSSYIKQVALITI 698 (918)
T ss_dssp CTTSCCEEEEESCCCHHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCchHHHHHHHHHHHH
Confidence 477899999999999999999999987543
No 134
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.13 E-value=1.3e-05 Score=81.31 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHHh
Q 024152 119 GRVVEIYGPEASGKTTLALHVIAEAQ 144 (271)
Q Consensus 119 G~li~I~G~~G~GKTtl~~~ia~~~~ 144 (271)
|++++|.||||+|||||++++ +...
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i-Gl~~ 813 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA-GLLA 813 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH-HHHH
T ss_pred CcEEEEECCCCCChHHHHHHH-HHHH
Confidence 899999999999999999999 6554
No 135
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.13 E-value=2.9e-06 Score=74.83 Aligned_cols=44 Identities=32% Similarity=0.497 Sum_probs=37.0
Q ss_pred HHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEE
Q 024152 105 FALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI 153 (271)
Q Consensus 105 ~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~ 153 (271)
+.|+.+.- .+++|++++|+||||+|||||++.|++.. +|.|+.+
T Consensus 114 ~vL~~vsl--~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~~~ 157 (305)
T 2v9p_A 114 NALKLWLK--GIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVLSF 157 (305)
T ss_dssp HHHHHHHH--TCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEECG
T ss_pred hhhccceE--EecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEEEE
Confidence 34666655 89999999999999999999999999998 6776543
No 136
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.12 E-value=2.3e-05 Score=69.50 Aligned_cols=79 Identities=22% Similarity=0.309 Sum_probs=50.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHh
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 194 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~ 194 (271)
+..+..-+.|.||||+|||+|++.++.... +...++++....... + . ... +..+..+.....
T Consensus 41 ~~~~~~~iLL~GppGtGKT~la~ala~~~~--~~~~~~i~~~~l~~~-------~------~--g~~-~~~~~~lf~~a~ 102 (322)
T 1xwi_A 41 KRTPWRGILLFGPPGTGKSYLAKAVATEAN--NSTFFSISSSDLVSK-------W------L--GES-EKLVKNLFQLAR 102 (322)
T ss_dssp TCCCCSEEEEESSSSSCHHHHHHHHHHHTT--SCEEEEEECCSSCCS-------S------C--CSC-HHHHHHHHHHHH
T ss_pred CCCCCceEEEECCCCccHHHHHHHHHHHcC--CCcEEEEEhHHHHhh-------h------h--hHH-HHHHHHHHHHHH
Confidence 566778899999999999999999998752 335555554322211 0 0 112 222222222233
Q ss_pred cCCccEEEEcchhhhcC
Q 024152 195 SGSVDVVVVDSVAALVP 211 (271)
Q Consensus 195 ~~~~~lvvID~l~~~~~ 211 (271)
...+.+++||.+..+.+
T Consensus 103 ~~~~~vl~iDEid~l~~ 119 (322)
T 1xwi_A 103 ENKPSIIFIDEIDSLCG 119 (322)
T ss_dssp HTSSEEEEEETTTGGGC
T ss_pred hcCCcEEEeecHHHhcc
Confidence 45789999999998864
No 137
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.10 E-value=1.7e-06 Score=71.63 Aligned_cols=30 Identities=33% Similarity=0.442 Sum_probs=25.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHh
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQ 144 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~ 144 (271)
-+++|++++|+||||||||||++.+++...
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 477999999999999999999999999874
No 138
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.10 E-value=4.8e-05 Score=70.13 Aligned_cols=88 Identities=18% Similarity=0.172 Sum_probs=57.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCH------HHHHHcCCcCCcceecCCCCHHHHHHHHHH
Q 024152 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP------SLAETIGVKTENLLLAQPDCGEQALSLVDT 191 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~------~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~ 191 (271)
++.++.++|+||+||||++..++..+.+.+++|++++....... .+....++... ......+..++...+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~--~~~~~~dp~~i~~~al~ 173 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVY--GEPNNQNPIEIAKKGVD 173 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEE--CCTTCSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCcee--eccccCCHHHHHHHHHH
Confidence 57899999999999999999999999998889998886533211 12233343221 11122334444433333
Q ss_pred HHhcCCccEEEEcchh
Q 024152 192 LIRSGSVDVVVVDSVA 207 (271)
Q Consensus 192 l~~~~~~~lvvID~l~ 207 (271)
.....++++++||...
T Consensus 174 ~a~~~~~DvvIIDTaG 189 (433)
T 3kl4_A 174 IFVKNKMDIIIVDTAG 189 (433)
T ss_dssp HTTTTTCSEEEEEECC
T ss_pred HHHhcCCCEEEEECCC
Confidence 3334578999999764
No 139
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.10 E-value=9.4e-06 Score=72.25 Aligned_cols=30 Identities=20% Similarity=0.298 Sum_probs=24.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHH-HhhcCCeEE
Q 024152 122 VEIYGPEASGKTTLALHVIAE-AQRQGGYCV 151 (271)
Q Consensus 122 i~I~G~~G~GKTtl~~~ia~~-~~~~~g~v~ 151 (271)
+.|.||||+||||+++.+++. ..+..|.+.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~ 69 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLK 69 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC--
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCeEE
Confidence 899999999999999999995 455666543
No 140
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.10 E-value=2e-05 Score=70.41 Aligned_cols=89 Identities=20% Similarity=0.290 Sum_probs=57.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHhhc------CCeEEEEcCCCCCCH-----HHHHHcCCcCCcceecCCCCHHHHH
Q 024152 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQ------GGYCVFIDAEHALDP-----SLAETIGVKTENLLLAQPDCGEQAL 186 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~------~g~v~~~~~e~~~~~-----~~~~~~g~~~~~~~~~~~~~~~e~~ 186 (271)
.+..+.|.||||+||||++..++...... +..+++++....... .+...++.... ....+..+++
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~----~~~~~~~~~~ 118 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVP----FTGLSVGEVY 118 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCC----SSCCCHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCC----CCCCCHHHHH
Confidence 56689999999999999999999887653 446777776544332 23334443211 1123455655
Q ss_pred HHHHHHHh-cCCccEEEEcchhhhc
Q 024152 187 SLVDTLIR-SGSVDVVVVDSVAALV 210 (271)
Q Consensus 187 ~~~~~l~~-~~~~~lvvID~l~~~~ 210 (271)
..+..... .....+++||.+..+.
T Consensus 119 ~~l~~~l~~~~~~~vlilDEi~~l~ 143 (387)
T 2v1u_A 119 ERLVKRLSRLRGIYIIVLDEIDFLP 143 (387)
T ss_dssp HHHHHHHTTSCSEEEEEEETTTHHH
T ss_pred HHHHHHHhccCCeEEEEEccHhhhc
Confidence 55444443 2347799999998775
No 141
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.09 E-value=1.5e-05 Score=70.03 Aligned_cols=41 Identities=20% Similarity=0.310 Sum_probs=35.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEcCCC
Q 024152 117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEH 157 (271)
Q Consensus 117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~~~-~g~v~~~~~e~ 157 (271)
.+|++++|+|+||+||||++..+++.+.+. +.+|.+++.+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT 144 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 378999999999999999999999999874 44888888654
No 142
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.07 E-value=6.4e-06 Score=81.17 Aligned_cols=31 Identities=32% Similarity=0.348 Sum_probs=27.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHHh-hcCCe
Q 024152 119 GRVVEIYGPEASGKTTLALHVIAEAQ-RQGGY 149 (271)
Q Consensus 119 G~li~I~G~~G~GKTtl~~~ia~~~~-~~~g~ 149 (271)
|++++|.||||+|||||++++++... ++.|.
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~ 607 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIALLAQVGS 607 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTC
T ss_pred CcEEEEECCCCCChHHHHHHHHhhhhhcccCc
Confidence 99999999999999999999999875 45553
No 143
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.07 E-value=3.4e-06 Score=69.86 Aligned_cols=39 Identities=28% Similarity=0.344 Sum_probs=31.7
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEc
Q 024152 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID 154 (271)
Q Consensus 116 l~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~ 154 (271)
.++|++++|+|+||||||||++.+++...+.+..+.++.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~ 57 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVP 57 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEe
Confidence 358999999999999999999999999987532344444
No 144
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=98.06 E-value=1e-05 Score=67.63 Aligned_cols=108 Identities=16% Similarity=0.140 Sum_probs=66.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC---CHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152 117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL---DPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 193 (271)
Q Consensus 117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~---~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~ 193 (271)
..|.+..|.|+-|+||||.++..+.+....+.+++++...... ...+.++.|...+...+... .++...+
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D~R~~~~~I~Sr~G~~~~a~~v~~~---~di~~~i---- 98 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYHKEKVVSHNGNAIEAINISKA---SEIMTHD---- 98 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC-----------CBTTBCCEEEEESSG---GGGGGSC----
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccCCcchhhhHHHhcCCceeeEEeCCH---HHHHHHH----
Confidence 4789999999999999998877788887777777777532211 12345556655444333322 2332221
Q ss_pred hcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcc
Q 024152 194 RSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQ 254 (271)
Q Consensus 194 ~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sq 254 (271)
..+.+.|+||..|.+.+ .+.+.+..| + +.|++|++..=
T Consensus 99 -~~~~dvV~IDEaQFf~~------------------~~v~~l~~l---a-~~gi~Vi~~GL 136 (219)
T 3e2i_A 99 -LTNVDVIGIDEVQFFDD------------------EIVSIVEKL---S-ADGHRVIVAGL 136 (219)
T ss_dssp -CTTCSEEEECCGGGSCT------------------HHHHHHHHH---H-HTTCEEEEEEE
T ss_pred -hcCCCEEEEechhcCCH------------------HHHHHHHHH---H-HCCCEEEEeec
Confidence 24688999999998862 122334444 5 68999988754
No 145
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=98.06 E-value=5e-07 Score=73.65 Aligned_cols=36 Identities=25% Similarity=0.412 Sum_probs=28.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC
Q 024152 121 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD 160 (271)
Q Consensus 121 li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~ 160 (271)
++.|.|++|||||+|+.+++.. +.+++|+.+....+
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~----~~~~~yiaT~~~~d 36 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD----APQVLYIATSQILD 36 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS----CSSEEEEECCCC--
T ss_pred CEEEECCCCCcHHHHHHHHHhc----CCCeEEEecCCCCC
Confidence 4789999999999999998754 45789998865544
No 146
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.04 E-value=2.1e-05 Score=76.48 Aligned_cols=26 Identities=38% Similarity=0.609 Sum_probs=23.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVI 140 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia 140 (271)
-+++|++++|+||||||||||++.++
T Consensus 344 ~I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 344 KIPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp EEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred EecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 57799999999999999999997654
No 147
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.03 E-value=5.9e-05 Score=64.15 Aligned_cols=72 Identities=18% Similarity=0.254 Sum_probs=43.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHhcCCccE
Q 024152 121 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVDV 200 (271)
Q Consensus 121 li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~l 200 (271)
-++|.||||+||||+++.++.... .++++++....... .. ......+...... .....+.+
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~~---~~~~~i~~~~~~~~-------------~~--~~~~~~~~~~~~~-a~~~~~~i 107 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEAK---VPFFTISGSDFVEM-------------FV--GVGASRVRDMFEQ-AKKAAPCI 107 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT---CCEEEECSCSSTTS-------------CC--CCCHHHHHHHHHH-HHTTCSEE
T ss_pred eEEEECcCCCCHHHHHHHHHHHcC---CCEEEEeHHHHHHH-------------hh--hhhHHHHHHHHHH-HHHcCCee
Confidence 389999999999999999998763 34566654322110 00 1122222222222 22345789
Q ss_pred EEEcchhhhcC
Q 024152 201 VVVDSVAALVP 211 (271)
Q Consensus 201 vvID~l~~~~~ 211 (271)
+++|.+..+.+
T Consensus 108 l~iDeid~l~~ 118 (257)
T 1lv7_A 108 IFIDEIDAVGR 118 (257)
T ss_dssp EEETTHHHHTC
T ss_pred ehhhhhhhhcc
Confidence 99999987764
No 148
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.03 E-value=4.6e-06 Score=73.80 Aligned_cols=41 Identities=22% Similarity=0.204 Sum_probs=34.8
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCC--eEEEEcCC
Q 024152 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGG--YCVFIDAE 156 (271)
Q Consensus 116 l~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g--~v~~~~~e 156 (271)
+++|++++|+|+||||||||++.|++...+..| .+.++..+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd 129 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTD 129 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGG
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecC
Confidence 689999999999999999999999999987644 46666543
No 149
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.02 E-value=1.7e-05 Score=69.49 Aligned_cols=87 Identities=23% Similarity=0.289 Sum_probs=54.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHH------HHHHcCCcCCcceecCCCCHHHHHHHHHH
Q 024152 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPS------LAETIGVKTENLLLAQPDCGEQALSLVDT 191 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~------~~~~~g~~~~~~~~~~~~~~~e~~~~~~~ 191 (271)
+|++++|+|+||+||||++.++++..++.+++|.+++........ +....++.. +......+..++...+-.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~--~~~~~~~~p~~l~~~~l~ 174 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPV--LEVMDGESPESIRRRVEE 174 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCE--EECCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEE--EEcCCCCCHHHHHHHHHH
Confidence 789999999999999999999999999988999988865432211 122223221 111122344454322211
Q ss_pred HHhcCCccEEEEcch
Q 024152 192 LIRSGSVDVVVVDSV 206 (271)
Q Consensus 192 l~~~~~~~lvvID~l 206 (271)
.....++++++||..
T Consensus 175 ~~~~~~~D~viiDtp 189 (295)
T 1ls1_A 175 KARLEARDLILVDTA 189 (295)
T ss_dssp HHHHHTCCEEEEECC
T ss_pred HHHhCCCCEEEEeCC
Confidence 121246899999975
No 150
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.00 E-value=2.5e-05 Score=77.43 Aligned_cols=28 Identities=32% Similarity=0.461 Sum_probs=26.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHHh
Q 024152 117 PKGRVVEIYGPEASGKTTLALHVIAEAQ 144 (271)
Q Consensus 117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~ 144 (271)
++|++++|.||||+|||||++++++...
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iagl~~ 632 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTALIAL 632 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHHHHH
Confidence 6899999999999999999999999754
No 151
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.00 E-value=1.8e-05 Score=65.89 Aligned_cols=39 Identities=23% Similarity=0.320 Sum_probs=33.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCC
Q 024152 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 156 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e 156 (271)
++..+.|.||||+|||||+..++......+..+.|++..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~ 89 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLG 89 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 677899999999999999999999888777778888753
No 152
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.99 E-value=7.8e-06 Score=67.15 Aligned_cols=53 Identities=30% Similarity=0.355 Sum_probs=36.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCH--HHHHHcCCcCCc
Q 024152 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP--SLAETIGVKTEN 173 (271)
Q Consensus 116 l~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~--~~~~~~g~~~~~ 173 (271)
.++|++++|.|+|||||||+++.+++.. |. ++++....... ......++.++.
T Consensus 26 ~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~-~~i~~d~~~~~~~~~~~~~g~~~~~ 80 (200)
T 4eun_A 26 GEPTRHVVVMGVSGSGKTTIAHGVADET----GL-EFAEADAFHSPENIATMQRGIPLTD 80 (200)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHH----CC-EEEEGGGGSCHHHHHHHHTTCCCCH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHhh----CC-eEEcccccccHHHHHHHhcCCCCCC
Confidence 3589999999999999999999999877 44 45554433322 223345666654
No 153
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.99 E-value=7e-06 Score=67.61 Aligned_cols=40 Identities=30% Similarity=0.251 Sum_probs=35.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcC
Q 024152 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 155 (271)
Q Consensus 116 l~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~ 155 (271)
.++|.+++|.|+||+|||||+..++....+.++.+.+++.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~ 58 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHM 58 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEecc
Confidence 4578999999999999999999999999888888877754
No 154
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.98 E-value=4.3e-06 Score=68.50 Aligned_cols=28 Identities=25% Similarity=0.421 Sum_probs=25.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152 116 LPKGRVVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 116 l~~G~li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
+++|++++|.||||||||||++.+++..
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4589999999999999999999999874
No 155
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=97.98 E-value=5.3e-05 Score=63.90 Aligned_cols=107 Identities=17% Similarity=0.125 Sum_probs=66.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC--HHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHhc
Q 024152 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRS 195 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~--~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~~ 195 (271)
.|.+..+.|+.|+||||.++..+.++...+.+|+++....... ....++.|+......+.. .++++..+
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg~~i~sr~G~~~~a~~i~~---~~di~~~~------ 88 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACL---LRDVAQEA------ 88 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC-----------CEEEEESS---GGGGHHHH------
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccchHHHHhhcCCeeEEEecCC---HHHHHHHh------
Confidence 6899999999999999999999999988888888775221111 234555565544433332 23333332
Q ss_pred CCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcccc
Q 024152 196 GSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVF 256 (271)
Q Consensus 196 ~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~ 256 (271)
...++|+||..|.+.. +.+..+ ++++.+++||+.....
T Consensus 89 ~~~dvViIDEaQF~~~-------------------v~el~~----~l~~~gi~VI~~GL~~ 126 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD-------------------IVEFCE----AMANAGKTVIVAALDG 126 (234)
T ss_dssp TTCSEEEESSGGGCTT-------------------HHHHHH----HHHHTTCEEEEECCSB
T ss_pred ccCCEEEEEchhhhhh-------------------HHHHHH----HHHhCCCEEEEEeccc
Confidence 4589999999998741 222333 3345899999987763
No 156
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.97 E-value=9e-07 Score=85.29 Aligned_cols=70 Identities=10% Similarity=0.130 Sum_probs=41.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhh-cCCeEEEEcCC-----CCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHH
Q 024152 122 VEIYGPEASGKTTLALHVIAEAQR-QGGYCVFIDAE-----HALDPSLAETIGVKTENLLLAQPDCGEQALSLVDT 191 (271)
Q Consensus 122 i~I~G~~G~GKTtl~~~ia~~~~~-~~g~v~~~~~e-----~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~ 191 (271)
++|+|+||||||||+..|++...| ..|.|.+.+.+ ......+...+++.+|+..+.+..++.+++..+..
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~ 123 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQN 123 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHH
T ss_pred EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHH
Confidence 999999999999999999998766 56654332211 01112334567888888776666667776665544
No 157
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=97.97 E-value=1.8e-05 Score=65.11 Aligned_cols=109 Identities=17% Similarity=0.145 Sum_probs=70.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC--HHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHh
Q 024152 117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD--PSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 194 (271)
Q Consensus 117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~--~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~ 194 (271)
..|.++.|.|+.|+||||.+++.+.+....+.+|+|+..+.... ..+.++.|...+..... +.+++... .
T Consensus 18 ~~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~~---~~~d~~~~----~- 89 (195)
T 1w4r_A 18 TRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPAC---LLRDVAQE----A- 89 (195)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGGGSCCHHHHHHSEEEEES---SGGGGHHH----H-
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccchhhhhhccCCcccceecC---CHHHHHHh----c-
Confidence 37899999999999999999999999988888899987542221 11233333332222222 22333332 1
Q ss_pred cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccc
Q 024152 195 SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 195 ~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~ 257 (271)
..++.|+||..|.+ . . +.+.++.| + +.|++||+.....+
T Consensus 90 -~~~DvIlIDEaQFf-k--------~----------~ve~~~~L---~-~~gk~VI~~GL~~D 128 (195)
T 1w4r_A 90 -LGVAVIGIDEGQFF-P--------D----------IVEFCEAM---A-NAGKTVIVAALDGT 128 (195)
T ss_dssp -HTCSEEEESSGGGC-T--------T----------HHHHHHHH---H-HTTCEEEEEEESBC
T ss_pred -cCCCEEEEEchhhh-H--------H----------HHHHHHHH---H-HCCCeEEEEecccc
Confidence 24899999999988 3 1 12334444 4 78999999876553
No 158
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=97.97 E-value=2.8e-05 Score=70.94 Aligned_cols=39 Identities=13% Similarity=0.027 Sum_probs=30.6
Q ss_pred CcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHh
Q 024152 103 GSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQ 144 (271)
Q Consensus 103 g~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~ 144 (271)
+|..|+.+.- -|.+| +++|+|+||+|||||+..|.....
T Consensus 47 nf~~l~~v~l--~~~~G-~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 47 NLATITQLEL--ELGGG-FCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp EETTEEEEEE--ECCSS-EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred cccceeeEEE--ecCCC-cEEEECCCCCCHHHHHHHHHHHhC
Confidence 3444544433 67799 999999999999999999977664
No 159
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.94 E-value=4.3e-05 Score=70.32 Aligned_cols=87 Identities=23% Similarity=0.277 Sum_probs=55.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCH------HHHHHcCCcCCcceecCCCCHHHHHHHHHH
Q 024152 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP------SLAETIGVKTENLLLAQPDCGEQALSLVDT 191 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~------~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~ 191 (271)
++.++.++|++|+||||++.+++..+++.+++|++++....... .+....+++. +......+..++...+..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v--~~~~~~~~p~~i~~~~l~ 174 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPV--LEVMDGESPESIRRRVEE 174 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCE--EECCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccE--EecCCCCCHHHHHHHHHH
Confidence 68899999999999999999999999988889998886432211 1223344321 111112344455332222
Q ss_pred HHhcCCccEEEEcch
Q 024152 192 LIRSGSVDVVVVDSV 206 (271)
Q Consensus 192 l~~~~~~~lvvID~l 206 (271)
.....+.++++||..
T Consensus 175 ~~~~~~~DvVIIDTa 189 (425)
T 2ffh_A 175 KARLEARDLILVDTA 189 (425)
T ss_dssp HHHHTTCSEEEEECC
T ss_pred HHHHCCCCEEEEcCC
Confidence 222357899999964
No 160
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.94 E-value=2.8e-06 Score=71.42 Aligned_cols=39 Identities=13% Similarity=0.223 Sum_probs=29.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh--cCCeEEEE
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR--QGGYCVFI 153 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~--~~g~v~~~ 153 (271)
-.++|++++|.||||+|||||++.+++...+ ..+.|.+.
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~t 52 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHT 52 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEE
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEec
Confidence 5789999999999999999999999998764 34444443
No 161
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.94 E-value=4.9e-05 Score=66.99 Aligned_cols=38 Identities=29% Similarity=0.352 Sum_probs=33.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcC
Q 024152 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 155 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~ 155 (271)
.+..+.|.||||+|||||+..++......+.+++|++.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~ 73 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSA 73 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEH
Confidence 56789999999999999999999988877777888864
No 162
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.93 E-value=5.6e-05 Score=65.84 Aligned_cols=86 Identities=19% Similarity=0.209 Sum_probs=54.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCH-HHHHHcCCcCCcceecCCCCHHHHHHHHHHHHhcC
Q 024152 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP-SLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSG 196 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~-~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~~~ 196 (271)
+...++|.||||+|||+++..++......++++++++....... .....+|..++....... ..+.. .....
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~---~~~~~----~~~~~ 118 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEG---GQLTE----AVRRR 118 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHHHHHCCCTTSTTTTTC---CHHHH----HHHHC
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHHHhcCCCCcccccccc---chHHH----HHHhC
Confidence 34589999999999999999999998877777777765433222 334445554432221111 11111 12223
Q ss_pred CccEEEEcchhhhc
Q 024152 197 SVDVVVVDSVAALV 210 (271)
Q Consensus 197 ~~~lvvID~l~~~~ 210 (271)
...++++|.+..+.
T Consensus 119 ~~~vl~lDEi~~l~ 132 (311)
T 4fcw_A 119 PYSVILFDAIEKAH 132 (311)
T ss_dssp SSEEEEEETGGGSC
T ss_pred CCeEEEEeChhhcC
Confidence 45799999987664
No 163
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.92 E-value=2.6e-05 Score=70.65 Aligned_cols=53 Identities=19% Similarity=0.210 Sum_probs=44.9
Q ss_pred CccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCC--eEEEE
Q 024152 98 PVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGG--YCVFI 153 (271)
Q Consensus 98 ~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g--~v~~~ 153 (271)
+.+.||+..+|.++. +.+|+.++|+|++|+|||||+..|+..+..... .++|.
T Consensus 156 ~~~~tGiraID~~~p---i~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~ 210 (422)
T 3ice_A 156 STEDLTARVLDLASP---IGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVL 210 (422)
T ss_dssp CTTHHHHHHHHHHSC---CBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred Ccccccceeeeeeee---ecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEE
Confidence 578999999999885 779999999999999999999999998876433 34554
No 164
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.92 E-value=1.1e-05 Score=66.26 Aligned_cols=38 Identities=34% Similarity=0.333 Sum_probs=31.5
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeE-EEEc
Q 024152 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYC-VFID 154 (271)
Q Consensus 116 l~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v-~~~~ 154 (271)
.++|+++.|.|+|||||||+++.++..+. ..|.+ +|++
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d 60 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILD 60 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEec
Confidence 35899999999999999999999999887 44543 4555
No 165
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.92 E-value=7.8e-05 Score=69.62 Aligned_cols=118 Identities=19% Similarity=0.211 Sum_probs=61.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHh
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 194 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~ 194 (271)
.+++| ++|.||||+|||+|++.+++... .+.++++....... .. ......+...+.. ..
T Consensus 47 ~~p~g--vLL~GppGtGKT~Laraia~~~~---~~f~~is~~~~~~~-------------~~--g~~~~~~r~lf~~-A~ 105 (476)
T 2ce7_A 47 RMPKG--ILLVGPPGTGKTLLARAVAGEAN---VPFFHISGSDFVEL-------------FV--GVGAARVRDLFAQ-AK 105 (476)
T ss_dssp CCCSE--EEEECCTTSSHHHHHHHHHHHHT---CCEEEEEGGGTTTC-------------CT--THHHHHHHHHHHH-HH
T ss_pred CCCCe--EEEECCCCCCHHHHHHHHHHHcC---CCeeeCCHHHHHHH-------------Hh--cccHHHHHHHHHH-HH
Confidence 34455 88999999999999999998653 34555543221110 00 0011222222222 22
Q ss_pred cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcccc
Q 024152 195 SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVF 256 (271)
Q Consensus 195 ~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~ 256 (271)
...+++++||.+..+.+...-....+.. ...+.+.+.+..+..+-...++.||++++..
T Consensus 106 ~~~p~ILfIDEid~l~~~r~~~~~g~~~---~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~ 164 (476)
T 2ce7_A 106 AHAPCIVFIDEIDAVGRHRGAGLGGGHD---EREQTLNQLLVEMDGFDSKEGIIVMAATNRP 164 (476)
T ss_dssp HTCSEEEEEETGGGTCCC---------C---HHHHHHHHHHHHHHHSCGGGTEEEEEEESCG
T ss_pred hcCCCEEEEechhhhhhhcccccCcCcH---HHHHHHHHHHHHHhccCCCCCEEEEEecCCh
Confidence 3568999999998876421100000111 1223334444444333334577888877754
No 166
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.91 E-value=7.4e-05 Score=64.66 Aligned_cols=37 Identities=32% Similarity=0.404 Sum_probs=28.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCC
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 156 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e 156 (271)
-+++| ++|.||||+|||||++.+++.... ..++++..
T Consensus 42 ~~~~G--vlL~Gp~GtGKTtLakala~~~~~---~~i~i~g~ 78 (274)
T 2x8a_A 42 VTPAG--VLLAGPPGCGKTLLAKAVANESGL---NFISVKGP 78 (274)
T ss_dssp CCCSE--EEEESSTTSCHHHHHHHHHHHTTC---EEEEEETT
T ss_pred CCCCe--EEEECCCCCcHHHHHHHHHHHcCC---CEEEEEcH
Confidence 45566 999999999999999999987643 34555543
No 167
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.90 E-value=6.1e-05 Score=69.56 Aligned_cols=88 Identities=18% Similarity=0.165 Sum_probs=57.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCH------HHHHHcCCcCCcceecCCCCHHHHHHHHHH
Q 024152 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDP------SLAETIGVKTENLLLAQPDCGEQALSLVDT 191 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~------~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~ 191 (271)
++.++.++|+||+||||++..++..+...+.+|++++....... .+....+++.-. .....+..++...+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~--~~~~~dp~~i~~~al~ 176 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFG--NPQEKDAIKLAKEGVD 176 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEEC--CTTCCCHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEe--cCCCCCHHHHHHHHHH
Confidence 46799999999999999999999999888888998886543322 233334443211 1112344444433333
Q ss_pred HHhcCCccEEEEcchh
Q 024152 192 LIRSGSVDVVVVDSVA 207 (271)
Q Consensus 192 l~~~~~~~lvvID~l~ 207 (271)
.....+.++++||...
T Consensus 177 ~a~~~~~DvVIIDTaG 192 (443)
T 3dm5_A 177 YFKSKGVDIIIVDTAG 192 (443)
T ss_dssp HHHHTTCSEEEEECCC
T ss_pred HHHhCCCCEEEEECCC
Confidence 3334568999999754
No 168
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.90 E-value=5.9e-05 Score=63.94 Aligned_cols=78 Identities=23% Similarity=0.221 Sum_probs=43.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHh
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 194 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~ 194 (271)
|+++..-+.|.||||+|||+++..++.... .++++++....... +.......+...+.. ..
T Consensus 35 g~~~~~~vll~G~~GtGKT~la~~la~~~~---~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~-a~ 95 (262)
T 2qz4_A 35 GAKVPKGALLLGPPGCGKTLLAKAVATEAQ---VPFLAMAGAEFVEV---------------IGGLGAARVRSLFKE-AR 95 (262)
T ss_dssp -CCCCCEEEEESCTTSSHHHHHHHHHHHHT---CCEEEEETTTTSSS---------------STTHHHHHHHHHHHH-HH
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHhC---CCEEEechHHHHhh---------------ccChhHHHHHHHHHH-HH
Confidence 556667799999999999999999988653 34566654322110 000011122222222 22
Q ss_pred cCCccEEEEcchhhhcC
Q 024152 195 SGSVDVVVVDSVAALVP 211 (271)
Q Consensus 195 ~~~~~lvvID~l~~~~~ 211 (271)
...+.+++||.+..+..
T Consensus 96 ~~~~~vl~iDeid~l~~ 112 (262)
T 2qz4_A 96 ARAPCIVYIDEIDAVGK 112 (262)
T ss_dssp HTCSEEEEEECC-----
T ss_pred hcCCeEEEEeCcchhhc
Confidence 34578999999988753
No 169
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.90 E-value=6.1e-05 Score=66.51 Aligned_cols=78 Identities=22% Similarity=0.302 Sum_probs=48.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHh
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 194 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~ 194 (271)
+..+..-+.|.||||+|||++++.++... +.++++++.. .+... +. ...+..+..+.....
T Consensus 47 ~~~~~~~vLl~GppGtGKT~la~aia~~~---~~~~~~v~~~-----~l~~~--~~---------g~~~~~~~~~f~~a~ 107 (322)
T 3eie_A 47 NRKPTSGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSS-----DLVSK--WM---------GESEKLVKQLFAMAR 107 (322)
T ss_dssp TCCCCCEEEEECSSSSCHHHHHHHHHHHH---TCEEEEEEHH-----HHHTT--TG---------GGHHHHHHHHHHHHH
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHH---CCCEEEEchH-----HHhhc--cc---------chHHHHHHHHHHHHH
Confidence 44566789999999999999999998765 3455555431 11000 00 112233322222333
Q ss_pred cCCccEEEEcchhhhcC
Q 024152 195 SGSVDVVVVDSVAALVP 211 (271)
Q Consensus 195 ~~~~~lvvID~l~~~~~ 211 (271)
...+.+++||.+..+.+
T Consensus 108 ~~~~~vl~iDEid~l~~ 124 (322)
T 3eie_A 108 ENKPSIIFIDQVDALTG 124 (322)
T ss_dssp HTSSEEEEEECGGGGSC
T ss_pred hcCCeEEEechhhhhhc
Confidence 45788999999998864
No 170
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.89 E-value=1.4e-05 Score=70.96 Aligned_cols=37 Identities=24% Similarity=0.242 Sum_probs=31.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhh--cCCeEEEEcCCC
Q 024152 121 VVEIYGPEASGKTTLALHVIAEAQR--QGGYCVFIDAEH 157 (271)
Q Consensus 121 li~I~G~~G~GKTtl~~~ia~~~~~--~~g~v~~~~~e~ 157 (271)
+++|+|+||||||||+..+++.... .++.+.+++...
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~ 132 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDG 132 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecc
Confidence 9999999999999999999998873 456777776543
No 171
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.89 E-value=7.4e-06 Score=69.61 Aligned_cols=36 Identities=17% Similarity=0.145 Sum_probs=25.7
Q ss_pred HHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152 106 ALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 106 ~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
.|+.+.- -+++|.+++|.||||||||||++.+++..
T Consensus 14 ~l~~isl--~i~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 14 GTENLYF--QSMRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp -----------CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eecceec--cCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4444433 67799999999999999999999999976
No 172
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.89 E-value=2.9e-05 Score=68.04 Aligned_cols=78 Identities=23% Similarity=0.318 Sum_probs=48.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHh
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 194 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~ 194 (271)
|++++..++|.||||+|||++++.++.... .+.+.++.. .......|... .....++..+ .
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~~---~~~i~v~~~----~l~~~~~g~~~--------~~~~~~f~~a----~ 105 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ---ANFISIKGP----ELLTMWFGESE--------ANVREIFDKA----R 105 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHTT---CEEEEECHH----HHHHHHHTTCT--------THHHHHHHHH----H
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHhC---CCEEEEEhH----HHHhhhcCchH--------HHHHHHHHHH----H
Confidence 788999999999999999999999998653 344544421 11111122111 1122222222 2
Q ss_pred cCCccEEEEcchhhhcC
Q 024152 195 SGSVDVVVVDSVAALVP 211 (271)
Q Consensus 195 ~~~~~lvvID~l~~~~~ 211 (271)
...+.++++|.+..+.+
T Consensus 106 ~~~p~il~iDEid~l~~ 122 (301)
T 3cf0_A 106 QAAPCVLFFDELDSIAK 122 (301)
T ss_dssp HTCSEEEEECSTTHHHH
T ss_pred hcCCeEEEEEChHHHhh
Confidence 34688999999987653
No 173
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.89 E-value=1e-05 Score=66.66 Aligned_cols=36 Identities=36% Similarity=0.390 Sum_probs=29.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcC
Q 024152 117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 155 (271)
Q Consensus 117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~ 155 (271)
++|++++|.|+||||||||++.+++...+ .+.|++.
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---~i~~v~~ 39 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLGE---RVALLPM 39 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHGG---GEEEEEG
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhCC---CeEEEec
Confidence 58899999999999999999999998764 3555553
No 174
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.89 E-value=1.8e-06 Score=74.80 Aligned_cols=34 Identities=15% Similarity=0.148 Sum_probs=22.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEc
Q 024152 121 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID 154 (271)
Q Consensus 121 li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~ 154 (271)
.++|+||||+|||||++.+++...+..|.+.+.+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g 37 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNRE 37 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC----------
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCC
Confidence 4789999999999999999999999888765543
No 175
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.87 E-value=0.00017 Score=62.44 Aligned_cols=75 Identities=23% Similarity=0.321 Sum_probs=47.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHhcCC
Q 024152 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGS 197 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~~~~ 197 (271)
++.-++|.||||+|||++++.++... +.+.+.++....... .....++....+........
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~----------------~~~~~~~~~~~~~~~~~~~~ 113 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC---SATFLNISAASLTSK----------------YVGDGEKLVRALFAVARHMQ 113 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT---TCEEEEEESTTTSSS----------------SCSCHHHHHHHHHHHHHHTC
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh---CCCeEEeeHHHHhhc----------------ccchHHHHHHHHHHHHHHcC
Confidence 56789999999999999999998765 334455554322110 01123333332222333457
Q ss_pred ccEEEEcchhhhcC
Q 024152 198 VDVVVVDSVAALVP 211 (271)
Q Consensus 198 ~~lvvID~l~~~~~ 211 (271)
+.+++||.+..+.+
T Consensus 114 ~~vl~iDEid~l~~ 127 (297)
T 3b9p_A 114 PSIIFIDEVDSLLS 127 (297)
T ss_dssp SEEEEEETGGGTSB
T ss_pred CcEEEeccHHHhcc
Confidence 89999999988864
No 176
>1oft_A SULA, hypothetical protein PA3008; bacterial cell division inhibitor, FTSZ, SULA protein; 2.9A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=97.87 E-value=0.00027 Score=56.09 Aligned_cols=107 Identities=18% Similarity=0.126 Sum_probs=71.9
Q ss_pred CccccCcHHHHHHhcCCCCCCCcEEEEE-cCCCCcHHHHHHHHHHHHhh--cCCeEEEEcCCCCCCHHHHHHcCCcCCcc
Q 024152 98 PVVSTGSFALDIALGTGGLPKGRVVEIY-GPEASGKTTLALHVIAEAQR--QGGYCVFIDAEHALDPSLAETIGVKTENL 174 (271)
Q Consensus 98 ~~i~Tg~~~LD~~l~~GGl~~G~li~I~-G~~G~GKTtl~~~ia~~~~~--~~g~v~~~~~e~~~~~~~~~~~g~~~~~~ 174 (271)
+.+|.|.+.+|..+..||++.|-+++|. ..+|.|=..|+.-++..+.. .++.++|+..............|++++++
T Consensus 23 ~~~p~~~~~~~~~~~~~~~~~G~l~Ell~~~~g~gel~LL~P~La~l~~~~~~r~vlwI~Pp~~l~~~~L~~~Gl~~~rl 102 (161)
T 1oft_A 23 NGAPLLDDVIDSPSSASIEEPAAFSELSLSGLPGHCLTLLAPILRELSEEQDARWLTLIAPPASLTHEWLRRAGLNRERI 102 (161)
T ss_dssp --------------------CCSEEEEEEESCHHHHHHHHHHHHHHHHTCSSSSEEEEESCCTTSCHHHHHHTTCCGGGE
T ss_pred ccCCCCcccccccCCCCCCCCcceEEEccCCCcHHHHHHHHHHHHHhcccccCccEEEECCCCCCCHHHHHHcCCCHHHE
Confidence 4579999999998854899999999998 46888877777766666654 67899999987777777778899999999
Q ss_pred eecCCCCHHHHHHHHHHHHhcCCccEEEEc
Q 024152 175 LLAQPDCGEQALSLVDTLIRSGSVDVVVVD 204 (271)
Q Consensus 175 ~~~~~~~~~e~~~~~~~l~~~~~~~lvvID 204 (271)
.+.+..+..+.++.+.+..+...+..|+..
T Consensus 103 l~v~~~~~~daLwa~EqALrsG~~~aVl~W 132 (161)
T 1oft_A 103 LLLQAKDNAAALALSCEALRLGRSHTVVSW 132 (161)
T ss_dssp EEECCSSTTHHHHHHHHHHHTTCEEEEEEC
T ss_pred EEEECCChHHHHHHHHHHHhcCCccEEEEC
Confidence 999988888999988888887888888764
No 177
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.87 E-value=9.3e-06 Score=65.65 Aligned_cols=30 Identities=13% Similarity=0.309 Sum_probs=25.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHh
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQ 144 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~ 144 (271)
|-.+|++++|+||||+|||||++.+++...
T Consensus 1 ~~~~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 1 GSHMRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp --CCCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 345899999999999999999999998764
No 178
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.86 E-value=1.6e-05 Score=63.97 Aligned_cols=38 Identities=26% Similarity=0.334 Sum_probs=31.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEc
Q 024152 117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID 154 (271)
Q Consensus 117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~ 154 (271)
++|.+++|.|++||||||++..++..+.+.+-++++++
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d 40 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD 40 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEEC
Confidence 68999999999999999999999998876444556555
No 179
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.86 E-value=1.1e-05 Score=74.08 Aligned_cols=39 Identities=18% Similarity=0.268 Sum_probs=35.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcC
Q 024152 117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 155 (271)
Q Consensus 117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~ 155 (271)
.+|++++|+||||+|||||++.+++...+..|.|++++.
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed 203 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVED 203 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEES
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecc
Confidence 589999999999999999999999999888888887764
No 180
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.83 E-value=0.00011 Score=69.16 Aligned_cols=114 Identities=23% Similarity=0.204 Sum_probs=63.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHH-HHHcCCcCCcceecCCC-CHHHHHHHHHHHHh
Q 024152 117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSL-AETIGVKTENLLLAQPD-CGEQALSLVDTLIR 194 (271)
Q Consensus 117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~-~~~~g~~~~~~~~~~~~-~~~e~~~~~~~l~~ 194 (271)
++...++|.||||+||||++..++..+ +..+++++......... ...+.-..+...+.... ...+ ....
T Consensus 75 ~~~~~lLL~GppGtGKTtla~~la~~l---~~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~------~~~~ 145 (516)
T 1sxj_A 75 GVFRAAMLYGPPGIGKTTAAHLVAQEL---GYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEE------AQNL 145 (516)
T ss_dssp TSCSEEEEECSTTSSHHHHHHHHHHHT---TCEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----------CCS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc---CCCEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhh------hhhc
Confidence 466799999999999999999998876 45677776654444322 11111111100000000 0000 1112
Q ss_pred cCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccc
Q 024152 195 SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFS 257 (271)
Q Consensus 195 ~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~ 257 (271)
.....+++||.+..+... .. ..+..|..+.++.+++||+++....
T Consensus 146 ~~~~~vliIDEid~l~~~--------~~----------~~l~~L~~~l~~~~~~iIli~~~~~ 190 (516)
T 1sxj_A 146 NGKHFVIIMDEVDGMSGG--------DR----------GGVGQLAQFCRKTSTPLILICNERN 190 (516)
T ss_dssp STTSEEEEECSGGGCCTT--------ST----------THHHHHHHHHHHCSSCEEEEESCTT
T ss_pred cCCCeEEEEECCCccchh--------hH----------HHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 345789999999887631 11 1122344445677888888876543
No 181
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.83 E-value=0.00023 Score=56.49 Aligned_cols=81 Identities=16% Similarity=0.247 Sum_probs=46.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHhh-------cCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHH
Q 024152 118 KGRVVEIYGPEASGKTTLALHVIAEAQR-------QGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVD 190 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~-------~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~ 190 (271)
.+..+.|.|+||+|||+++..++..+.. .+..+++++... .. .+... .. .....+...+.
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~--~~~~~----~~--~~~~~~~~~~~ 108 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA-----LV--AGAKY----RG--EFEERLKGVLN 108 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHH-----HH--TTTCS----HH--HHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHH-----Hh--ccCCc----cc--cHHHHHHHHHH
Confidence 4567899999999999999999988765 234555554210 00 00000 00 00111222233
Q ss_pred HHHhcCCccEEEEcchhhhcC
Q 024152 191 TLIRSGSVDVVVVDSVAALVP 211 (271)
Q Consensus 191 ~l~~~~~~~lvvID~l~~~~~ 211 (271)
.+....+..+++||.+..+.+
T Consensus 109 ~~~~~~~~~vl~iDe~~~l~~ 129 (195)
T 1jbk_A 109 DLAKQEGNVILFIDELHTMVG 129 (195)
T ss_dssp HHHHSTTTEEEEEETGGGGTT
T ss_pred HHhhcCCCeEEEEeCHHHHhc
Confidence 333345577999999988753
No 182
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.83 E-value=2e-05 Score=63.73 Aligned_cols=39 Identities=36% Similarity=0.422 Sum_probs=34.8
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEc
Q 024152 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID 154 (271)
Q Consensus 116 l~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~ 154 (271)
..+|.++.|.|+||+||||++..++..+...++.+.+++
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~ 48 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLD 48 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEee
Confidence 458999999999999999999999999888888877775
No 183
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.81 E-value=9e-05 Score=66.51 Aligned_cols=78 Identities=22% Similarity=0.340 Sum_probs=46.9
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHh
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 194 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~ 194 (271)
+..+..-++|.||||+|||+|++.++.... .++++++.. .+.. .+ .. .. +..+..+.....
T Consensus 80 ~~~~~~~iLL~GppGtGKT~la~ala~~~~---~~~~~v~~~-----~l~~--~~------~g--~~-~~~~~~~f~~a~ 140 (355)
T 2qp9_X 80 NRKPTSGILLYGPPGTGKSYLAKAVATEAN---STFFSVSSS-----DLVS--KW------MG--ES-EKLVKQLFAMAR 140 (355)
T ss_dssp SCCCCCCEEEECSTTSCHHHHHHHHHHHHT---CEEEEEEHH-----HHHS--CC-----------C-HHHHHHHHHHHH
T ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHhC---CCEEEeeHH-----HHhh--hh------cc--hH-HHHHHHHHHHHH
Confidence 455666789999999999999999998763 444555421 1110 00 00 11 222222222233
Q ss_pred cCCccEEEEcchhhhcC
Q 024152 195 SGSVDVVVVDSVAALVP 211 (271)
Q Consensus 195 ~~~~~lvvID~l~~~~~ 211 (271)
...+.+++||.+..+.+
T Consensus 141 ~~~~~vl~iDEid~l~~ 157 (355)
T 2qp9_X 141 ENKPSIIFIDQVDALTG 157 (355)
T ss_dssp HTSSEEEEEECGGGGTC
T ss_pred HcCCeEEEEechHhhcc
Confidence 45788999999998864
No 184
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.80 E-value=1.1e-05 Score=66.42 Aligned_cols=28 Identities=32% Similarity=0.472 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHHh
Q 024152 117 PKGRVVEIYGPEASGKTTLALHVIAEAQ 144 (271)
Q Consensus 117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~ 144 (271)
++|++++|+||||+|||||++.+++...
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5799999999999999999999999874
No 185
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.79 E-value=1.3e-05 Score=65.52 Aligned_cols=30 Identities=23% Similarity=0.444 Sum_probs=26.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHHhh
Q 024152 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQR 145 (271)
Q Consensus 116 l~~G~li~I~G~~G~GKTtl~~~ia~~~~~ 145 (271)
+++|++++|.|+|||||||++..++....+
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~ 32 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFEDPST 32 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHCTTC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 578999999999999999999999987644
No 186
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.79 E-value=3e-05 Score=67.73 Aligned_cols=82 Identities=16% Similarity=0.196 Sum_probs=46.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHh
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 194 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~ 194 (271)
|.++...++|.||||+|||+|+..++..+ +.++++++...... ...|.. .....+.+..+..+.+
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l---~~~~i~v~~~~l~~----~~~g~~--------~~~i~~~f~~a~~~~~ 96 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKM---GINPIMMSAGELES----GNAGEP--------AKLIRQRYREAAEIIR 96 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHH---TCCCEEEEHHHHHC----C---HH--------HHHHHHHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeHHHhhh----ccCchh--------HHHHHHHHHHHHHHHh
Confidence 56667789999999999999999999877 33455555211000 000000 0001122333333334
Q ss_pred cCCccEEEEcchhhhcC
Q 024152 195 SGSVDVVVVDSVAALVP 211 (271)
Q Consensus 195 ~~~~~lvvID~l~~~~~ 211 (271)
...+.+++||.+..+.+
T Consensus 97 ~~~~~vl~iDEiD~~~~ 113 (293)
T 3t15_A 97 KGNMCCLFINDLDAGAG 113 (293)
T ss_dssp TSSCCCEEEECCC----
T ss_pred cCCCeEEEEechhhhcC
Confidence 56789999999977654
No 187
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.79 E-value=0.0005 Score=57.76 Aligned_cols=43 Identities=26% Similarity=0.180 Sum_probs=35.5
Q ss_pred CCcE-EEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCC
Q 024152 118 KGRV-VEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALD 160 (271)
Q Consensus 118 ~G~l-i~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~ 160 (271)
+|.+ +.+.|+||+||||++.+++..++..+.+|++++.+.-..
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~ 47 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGR 47 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTC
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCC
Confidence 5666 788999999999999999999998877888877654333
No 188
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.78 E-value=1.8e-05 Score=64.10 Aligned_cols=31 Identities=23% Similarity=0.315 Sum_probs=25.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEE
Q 024152 119 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVF 152 (271)
Q Consensus 119 G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~ 152 (271)
|++++|.|+||+||||+++.++. +.++.+.+
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i 32 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYI 32 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEE
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEE
Confidence 68999999999999999999975 45565443
No 189
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.77 E-value=0.0001 Score=68.15 Aligned_cols=106 Identities=17% Similarity=0.188 Sum_probs=62.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHHhhc--CCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHhcC
Q 024152 119 GRVVEIYGPEASGKTTLALHVIAEAQRQ--GGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSG 196 (271)
Q Consensus 119 G~li~I~G~~G~GKTtl~~~ia~~~~~~--~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~~~ 196 (271)
+.-+.|.||||+|||||+..++..+... +..++|++.+.... .+...+. ......+ ... . ..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~-~~~~~~~----------~~~~~~~---~~~-~-~~ 193 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLN-DLVDSMK----------EGKLNEF---REK-Y-RK 193 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHH-HHHHHHH----------TTCHHHH---HHH-H-TT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHH-HHHHHHH----------cccHHHH---HHH-h-cC
Confidence 5789999999999999999999988765 55778876432111 1111000 0011111 111 1 12
Q ss_pred CccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcccc
Q 024152 197 SVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVF 256 (271)
Q Consensus 197 ~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~ 256 (271)
.+++++||.++.+.+ .. ..+.++...+..+ .+.++.||++++..
T Consensus 194 ~~~vL~IDEi~~l~~---------~~---~~q~~l~~~l~~l----~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 194 KVDILLIDDVQFLIG---------KT---GVQTELFHTFNEL----HDSGKQIVICSDRE 237 (440)
T ss_dssp TCSEEEEECGGGGSS---------CH---HHHHHHHHHHHHH----HTTTCEEEEEESSC
T ss_pred CCCEEEEeCcccccC---------Ch---HHHHHHHHHHHHH----HHCCCeEEEEECCC
Confidence 688999999988762 10 1122333333333 46688888888764
No 190
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=97.76 E-value=4.6e-05 Score=70.79 Aligned_cols=50 Identities=26% Similarity=0.403 Sum_probs=43.4
Q ss_pred CCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCe
Q 024152 97 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGY 149 (271)
Q Consensus 97 ~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~ 149 (271)
.+.+.||+..+|.+.. +-+|+.++|+|+||+|||||++.++.+.....+.
T Consensus 132 ~e~l~TGir~ID~L~p---i~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~ 181 (473)
T 1sky_E 132 VEILETGIKVVDLLAP---YIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGG 181 (473)
T ss_dssp CCEECCSCHHHHHHSC---EETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCC
T ss_pred CccccccchHHHHHhh---hccCCEEEEECCCCCCccHHHHHHHhhhhhccCc
Confidence 4678999999999975 6689999999999999999999999988765443
No 191
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.75 E-value=1.1e-05 Score=65.42 Aligned_cols=27 Identities=37% Similarity=0.546 Sum_probs=24.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHHhh
Q 024152 119 GRVVEIYGPEASGKTTLALHVIAEAQR 145 (271)
Q Consensus 119 G~li~I~G~~G~GKTtl~~~ia~~~~~ 145 (271)
|++++|.||||+|||||++.+++...+
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~ 27 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 578999999999999999999998764
No 192
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=97.75 E-value=7.8e-05 Score=74.69 Aligned_cols=26 Identities=38% Similarity=0.609 Sum_probs=24.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVI 140 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia 140 (271)
-+++|++++|+|+||+|||||++.++
T Consensus 646 ~I~~Geiv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 646 KIPLGTFVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp EEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred EEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 57799999999999999999999865
No 193
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.73 E-value=8.7e-06 Score=68.36 Aligned_cols=29 Identities=24% Similarity=0.365 Sum_probs=20.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHH-HHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVI-AEA 143 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia-~~~ 143 (271)
-+++|++++|.|||||||||+++.++ +..
T Consensus 23 ~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 23 LKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEECCCEEEEECSCC----CHHHHHHC---
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 46699999999999999999999999 876
No 194
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.72 E-value=1.2e-05 Score=75.14 Aligned_cols=39 Identities=15% Similarity=0.169 Sum_probs=34.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEc
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID 154 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~ 154 (271)
-+++ ++++|.||||||||||++.+++...+..|.+.+.+
T Consensus 26 ~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g 64 (483)
T 3euj_A 26 DFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRN 64 (483)
T ss_dssp ECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCC
T ss_pred EEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECC
Confidence 5778 99999999999999999999999999888855543
No 195
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.71 E-value=6.2e-05 Score=59.89 Aligned_cols=28 Identities=14% Similarity=0.151 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHhh
Q 024152 118 KGRVVEIYGPEASGKTTLALHVIAEAQR 145 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~ 145 (271)
.+..+.|.|+||+|||+++..++.....
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3557799999999999999999988765
No 196
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.67 E-value=9.2e-05 Score=73.18 Aligned_cols=116 Identities=22% Similarity=0.359 Sum_probs=65.8
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHH
Q 024152 114 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 193 (271)
Q Consensus 114 GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~ 193 (271)
.|+.+..=++|.||||+|||+|++.+|..+ +...++++.. .+. + ...-..+..+..+....
T Consensus 233 ~g~~~p~GILL~GPPGTGKT~LAraiA~el---g~~~~~v~~~-----~l~---s--------k~~gese~~lr~lF~~A 293 (806)
T 3cf2_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGP-----EIM---S--------KLAGESESNLRKAFEEA 293 (806)
T ss_dssp CCCCCCCEEEEECCTTSCHHHHHHHHHTTT---TCEEEEEEHH-----HHH---S--------SCTTHHHHHHHHHHHHH
T ss_pred cCCCCCCeEEEECCCCCCHHHHHHHHHHHh---CCeEEEEEhH-----Hhh---c--------ccchHHHHHHHHHHHHH
Confidence 477888889999999999999999988654 2344444421 111 0 00112233333332333
Q ss_pred hcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcc
Q 024152 194 RSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQ 254 (271)
Q Consensus 194 ~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sq 254 (271)
....+.+++||.+-.+.+...-.. ++. ..+.+.+.+..+..+....++.||+.+.
T Consensus 294 ~~~~PsIIfIDEiDal~~~r~~~~--~~~----~~riv~~LL~~mdg~~~~~~V~VIaaTN 348 (806)
T 3cf2_A 294 EKNAPAIIFIDELDAIAPKREKTH--GEV----ERRIVSQLLTLMDGLKQRAHVIVMAATN 348 (806)
T ss_dssp TTSCSEEEEEESGGGTCCTTTTCC--CTT----HHHHHHHHHTHHHHCCGGGCEEEEEECS
T ss_pred HHcCCeEEEEehhcccccccCCCC--ChH----HHHHHHHHHHHHhcccccCCEEEEEecC
Confidence 456799999999998875332111 221 1233444444454444455666666654
No 197
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.64 E-value=3.1e-05 Score=64.09 Aligned_cols=28 Identities=25% Similarity=0.500 Sum_probs=25.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHHh
Q 024152 117 PKGRVVEIYGPEASGKTTLALHVIAEAQ 144 (271)
Q Consensus 117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~ 144 (271)
++|.+++|.||||+||||++..++....
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4899999999999999999999988764
No 198
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.64 E-value=6.8e-05 Score=61.85 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=23.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 024152 120 RVVEIYGPEASGKTTLALHVIAEAQRQ 146 (271)
Q Consensus 120 ~li~I~G~~G~GKTtl~~~ia~~~~~~ 146 (271)
..+.|.|+||+||||++..++......
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~~~ 72 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLNCE 72 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHHCT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 489999999999999999999877643
No 199
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.63 E-value=0.00028 Score=62.61 Aligned_cols=30 Identities=27% Similarity=0.566 Sum_probs=25.2
Q ss_pred CCcE--EEEEcCCCCcHHHHHHHHHHHHhhcC
Q 024152 118 KGRV--VEIYGPEASGKTTLALHVIAEAQRQG 147 (271)
Q Consensus 118 ~G~l--i~I~G~~G~GKTtl~~~ia~~~~~~~ 147 (271)
.|++ ++|.||||+||||+++.++..+....
T Consensus 43 ~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~ 74 (340)
T 1sxj_C 43 EGKLPHLLFYGPPGTGKTSTIVALAREIYGKN 74 (340)
T ss_dssp TTCCCCEEEECSSSSSHHHHHHHHHHHHHTTS
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 4444 99999999999999999999876543
No 200
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.62 E-value=2.4e-05 Score=65.79 Aligned_cols=36 Identities=25% Similarity=0.098 Sum_probs=30.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEc
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID 154 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~ 154 (271)
..++|++++|.|++||||||+++.+++. +|.|.+..
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~ 51 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLT 51 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEEC
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEe
Confidence 5679999999999999999999998876 56666654
No 201
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.61 E-value=4e-05 Score=61.17 Aligned_cols=36 Identities=22% Similarity=0.370 Sum_probs=28.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCC
Q 024152 117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH 157 (271)
Q Consensus 117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~ 157 (271)
.+|++++|.|+||+||||++..++... |. .+++...
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~-~~i~~d~ 41 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HA-AFLDGDF 41 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TC-EEEEGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----Cc-EEEeCcc
Confidence 478999999999999999999998865 33 4555443
No 202
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.61 E-value=0.00046 Score=56.08 Aligned_cols=24 Identities=25% Similarity=0.392 Sum_probs=21.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhh
Q 024152 122 VEIYGPEASGKTTLALHVIAEAQR 145 (271)
Q Consensus 122 i~I~G~~G~GKTtl~~~ia~~~~~ 145 (271)
+.|.|+||+|||+++..++..+..
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~~~ 64 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDLFG 64 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHG
T ss_pred EEEECCCCCCHHHHHHHHHHHHhc
Confidence 899999999999999999987654
No 203
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=97.60 E-value=0.00038 Score=69.79 Aligned_cols=23 Identities=35% Similarity=0.598 Sum_probs=21.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLAL 137 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~ 137 (271)
-+++|++++|+|+||+|||||++
T Consensus 606 ~I~~Geiv~I~G~SGSGKSTLl~ 628 (916)
T 3pih_A 606 EIPLGVFVCVTGVSGSGKSSLVM 628 (916)
T ss_dssp EEESSSEEEEECSTTSSHHHHHH
T ss_pred EEcCCcEEEEEccCCCChhhhHH
Confidence 57799999999999999999974
No 204
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.60 E-value=0.00015 Score=72.10 Aligned_cols=29 Identities=38% Similarity=0.613 Sum_probs=26.9
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
|+++++.++|+||||+|||||++.+++..
T Consensus 234 ~i~~~~~vLL~Gp~GtGKTtLarala~~l 262 (806)
T 1ypw_A 234 GVKPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp CCCCCCEEEECSCTTSSHHHHHHHHHHTT
T ss_pred CCCCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 78899999999999999999999998764
No 205
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.59 E-value=8.6e-06 Score=81.93 Aligned_cols=38 Identities=21% Similarity=0.272 Sum_probs=34.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEE
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVF 152 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~ 152 (271)
-+.+|++++|.|+||+|||||++.|++...++.|.|.+
T Consensus 695 ~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~ 732 (986)
T 2iw3_A 695 QCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYT 732 (986)
T ss_dssp EEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEE
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 47799999999999999999999999999988887654
No 206
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.59 E-value=0.00032 Score=60.97 Aligned_cols=38 Identities=29% Similarity=0.358 Sum_probs=30.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHHhhcC----CeEEEEc
Q 024152 117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQG----GYCVFID 154 (271)
Q Consensus 117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~----g~v~~~~ 154 (271)
.++.-+.|.||||+|||+++..++..+...+ +++++++
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~ 106 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVT 106 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEEC
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEc
Confidence 3556799999999999999999998886532 3566665
No 207
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.58 E-value=1.4e-05 Score=73.35 Aligned_cols=30 Identities=20% Similarity=0.295 Sum_probs=27.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCeE
Q 024152 121 VVEIYGPEASGKTTLALHVIAEAQRQGGYC 150 (271)
Q Consensus 121 li~I~G~~G~GKTtl~~~ia~~~~~~~g~v 150 (271)
+++|+||||+|||||++.+++...+..|.+
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~~p~~GsI 100 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIGNEEEGAA 100 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCccCceE
Confidence 999999999999999999999887776654
No 208
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.57 E-value=5.3e-06 Score=73.25 Aligned_cols=37 Identities=14% Similarity=0.059 Sum_probs=24.6
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEE
Q 024152 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVF 152 (271)
Q Consensus 116 l~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~ 152 (271)
+.+|++++|+|+||+|||||++.+++...+..|.+.+
T Consensus 170 ~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~ 206 (307)
T 1t9h_A 170 HFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISE 206 (307)
T ss_dssp GGTTSEEEEEESHHHHHHHHHHHHCC-----------
T ss_pred hcCCCEEEEECCCCCCHHHHHHHhcccccccccceee
Confidence 5589999999999999999999999988887777554
No 209
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.56 E-value=0.00049 Score=61.66 Aligned_cols=76 Identities=18% Similarity=0.318 Sum_probs=46.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHhcC
Q 024152 117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSG 196 (271)
Q Consensus 117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~~~ 196 (271)
.+..-++|.||||+|||+|+..++... +..+++++....... .....+..+..+.......
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~---~~~~~~i~~~~l~~~----------------~~g~~~~~~~~~~~~a~~~ 175 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS---GATFFSISASSLTSK----------------WVGEGEKMVRALFAVARCQ 175 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT---TCEEEEEEGGGGCCS----------------STTHHHHHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc---CCeEEEEehHHhhcc----------------ccchHHHHHHHHHHHHHhc
Confidence 356679999999999999999998764 345566654221110 0011122222222223345
Q ss_pred CccEEEEcchhhhcC
Q 024152 197 SVDVVVVDSVAALVP 211 (271)
Q Consensus 197 ~~~lvvID~l~~~~~ 211 (271)
.+.+++||.+..+.+
T Consensus 176 ~~~vl~iDEid~l~~ 190 (357)
T 3d8b_A 176 QPAVIFIDEIDSLLS 190 (357)
T ss_dssp CSEEEEEETHHHHTB
T ss_pred CCeEEEEeCchhhhc
Confidence 688999999988864
No 210
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.56 E-value=5.2e-05 Score=62.09 Aligned_cols=29 Identities=21% Similarity=0.076 Sum_probs=24.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
.+++|.+++|.|+|||||||++..++...
T Consensus 21 ~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 21 QSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 45699999999999999999999999876
No 211
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.55 E-value=8.6e-05 Score=66.48 Aligned_cols=88 Identities=17% Similarity=0.182 Sum_probs=53.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHhhc--------CCeEEEEcCCCCC-CH-----HHHHHc-CCcCCcceecCCCCH
Q 024152 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQ--------GGYCVFIDAEHAL-DP-----SLAETI-GVKTENLLLAQPDCG 182 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~--------~g~v~~~~~e~~~-~~-----~~~~~~-g~~~~~~~~~~~~~~ 182 (271)
.+..+.|.||||+|||+++..++..+... +..+++++..... .. .+...+ +.... ....+.
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~----~~~~~~ 119 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVP----KHGINL 119 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCC----SSSSCT
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCC----CCCCCH
Confidence 34589999999999999999999887654 5567777643221 11 112222 32211 111233
Q ss_pred HHHHHHHHHHHhcCCccEEEEcchhhhc
Q 024152 183 EQALSLVDTLIRSGSVDVVVVDSVAALV 210 (271)
Q Consensus 183 ~e~~~~~~~l~~~~~~~lvvID~l~~~~ 210 (271)
.+++..+.......+. +++||.++.+.
T Consensus 120 ~~~~~~l~~~l~~~~~-vlilDEi~~l~ 146 (384)
T 2qby_B 120 GEYIDKIKNGTRNIRA-IIYLDEVDTLV 146 (384)
T ss_dssp HHHHHHHHHHHSSSCE-EEEEETTHHHH
T ss_pred HHHHHHHHHHhccCCC-EEEEECHHHhc
Confidence 4555555544443444 99999998775
No 212
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.54 E-value=0.00034 Score=64.68 Aligned_cols=79 Identities=19% Similarity=0.291 Sum_probs=48.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHh
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR 194 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~ 194 (271)
+..+..-++|.||||+|||+|+..++... .+..++.++....... ..|. ......+++..++
T Consensus 163 ~~~~~~~vLL~GppGtGKT~lA~aia~~~--~~~~~~~v~~~~l~~~----~~g~--------~~~~~~~~f~~a~---- 224 (444)
T 2zan_A 163 KRTPWRGILLFGPPGTGKSYLAKAVATEA--NNSTFFSISSSDLVSK----WLGE--------SEKLVKNLFQLAR---- 224 (444)
T ss_dssp GGCCCSEEEEECSTTSSHHHHHHHHHHHC--CSSEEEEECCC---------------------CCCTHHHHHHHHH----
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHHHc--CCCCEEEEeHHHHHhh----hcch--------HHHHHHHHHHHHH----
Confidence 45677889999999999999999999875 2335555554322211 1111 1112333333332
Q ss_pred cCCccEEEEcchhhhcC
Q 024152 195 SGSVDVVVVDSVAALVP 211 (271)
Q Consensus 195 ~~~~~lvvID~l~~~~~ 211 (271)
...+.+++||.+..+.+
T Consensus 225 ~~~~~vl~iDEid~l~~ 241 (444)
T 2zan_A 225 ENKPSIIFIDEIDSLCG 241 (444)
T ss_dssp HSCSEEEEESCTTTTCC
T ss_pred HcCCeEEEEechHhhcc
Confidence 35689999999988764
No 213
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.53 E-value=3.5e-05 Score=69.33 Aligned_cols=46 Identities=22% Similarity=0.246 Sum_probs=35.1
Q ss_pred cCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHh-hcCCeEEEE
Q 024152 102 TGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQ-RQGGYCVFI 153 (271)
Q Consensus 102 Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~-~~~g~v~~~ 153 (271)
.|+.+|.... +|++++|+|+||+|||||++.+++... +..|.|.+.
T Consensus 204 ~gl~~L~~~~------~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~ 250 (358)
T 2rcn_A 204 DGLKPLEEAL------TGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNV 250 (358)
T ss_dssp BTHHHHHHHH------TTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----
T ss_pred cCHHHHHHhc------CCCEEEEECCCCccHHHHHHHHhccccccccCCcccc
Confidence 4667777655 689999999999999999999999887 777776554
No 214
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.52 E-value=9.8e-05 Score=66.18 Aligned_cols=40 Identities=20% Similarity=0.248 Sum_probs=34.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCC
Q 024152 117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 156 (271)
Q Consensus 117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e 156 (271)
+++.+++|+|+||+|||||++.+++...+.+++|.++..+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~d 111 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVD 111 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeec
Confidence 3578999999999999999999999988888887777643
No 215
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=97.52 E-value=0.00064 Score=68.35 Aligned_cols=26 Identities=31% Similarity=0.572 Sum_probs=24.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVI 140 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia 140 (271)
-+++|++++|+|+||+|||||++.++
T Consensus 664 ~I~~GeivaI~G~nGSGKSTLl~~il 689 (993)
T 2ygr_A 664 SFPLGVLTSVTGVSGSGKSTLVNDIL 689 (993)
T ss_dssp EEESSSEEEEECSTTSSHHHHHTTTH
T ss_pred EECCCCEEEEEcCCCCCHHHHHHHHH
Confidence 57899999999999999999999865
No 216
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.52 E-value=5.6e-05 Score=71.85 Aligned_cols=41 Identities=29% Similarity=0.374 Sum_probs=35.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCC-eEEEEcC
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGG-YCVFIDA 155 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g-~v~~~~~ 155 (271)
-+++|+++.|+|+|||||||+++.+++.+.+.+| .+.+++.
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDg 406 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDG 406 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESS
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECC
Confidence 3568999999999999999999999999988775 6666764
No 217
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.51 E-value=0.0001 Score=60.86 Aligned_cols=40 Identities=28% Similarity=0.306 Sum_probs=33.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCC-eEEEEc
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGG-YCVFID 154 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g-~v~~~~ 154 (271)
.+++|.++.|.|+||+||||++..++....+..| ++++++
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence 3568999999999999999999999998874433 566775
No 218
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.50 E-value=9e-05 Score=67.17 Aligned_cols=42 Identities=36% Similarity=0.425 Sum_probs=33.7
Q ss_pred HHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEE
Q 024152 106 ALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVF 152 (271)
Q Consensus 106 ~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~ 152 (271)
.|+.+.- ++++|++++|.||||+|||||+..+++.. +|.+++
T Consensus 158 ~l~~~~~--~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~ 199 (377)
T 1svm_A 158 FLKCMVY--NIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALN 199 (377)
T ss_dssp HHHHHHH--CCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEEC
T ss_pred HHHhccc--ccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEE
Confidence 4455554 89999999999999999999999999753 565444
No 219
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.49 E-value=7.4e-05 Score=60.30 Aligned_cols=29 Identities=28% Similarity=0.421 Sum_probs=26.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
|.+++.++.|.|+||+||||++..++...
T Consensus 1 ~~~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 1 GMQTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCSCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 56788999999999999999999998765
No 220
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.49 E-value=0.0006 Score=60.72 Aligned_cols=31 Identities=32% Similarity=0.433 Sum_probs=27.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR 145 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~ 145 (271)
|..+|..+.|.||||+|||++++.++..+..
T Consensus 66 ~~~~~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 66 GKIAGRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp TCCTTCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 6667899999999999999999999998763
No 221
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.49 E-value=0.00059 Score=62.90 Aligned_cols=87 Identities=20% Similarity=0.116 Sum_probs=54.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHhhc-CCeEEEEcCCCCCCH--H----HHHHcCCcCCcceecCCCCHHHHHHHHH
Q 024152 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEHALDP--S----LAETIGVKTENLLLAQPDCGEQALSLVD 190 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~-~g~v~~~~~e~~~~~--~----~~~~~g~~~~~~~~~~~~~~~e~~~~~~ 190 (271)
+..++.++|++|+||||++.+++..++.. +.+|++++....... . +....+++.-. .....+..+++..+-
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~--~~~~~dp~~i~~~~l 176 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFP--SDVGQKPVDIVNAAL 176 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECC--CCSSSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEe--CCCCCCHHHHHHHHH
Confidence 34689999999999999999999999987 778999987643221 1 22333332110 011134455533222
Q ss_pred HHHhcCCccEEEEcch
Q 024152 191 TLIRSGSVDVVVVDSV 206 (271)
Q Consensus 191 ~l~~~~~~~lvvID~l 206 (271)
......+.++++||..
T Consensus 177 ~~~~~~~~D~VIIDTp 192 (433)
T 2xxa_A 177 KEAKLKFYDVLLVDTA 192 (433)
T ss_dssp HHHHHTTCSEEEEECC
T ss_pred HHHHhCCCCEEEEECC
Confidence 2222356899999974
No 222
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.49 E-value=0.00013 Score=56.70 Aligned_cols=37 Identities=22% Similarity=0.208 Sum_probs=28.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcC
Q 024152 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 155 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~ 155 (271)
.+.-+.|.|+||+|||+++..++......+.+.+ ++.
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~ 59 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRE 59 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEE
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EEC
Confidence 3445899999999999999999876655555545 543
No 223
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=97.48 E-value=0.00053 Score=68.11 Aligned_cols=30 Identities=27% Similarity=0.468 Sum_probs=26.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHH-HHHHHh
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALH-VIAEAQ 144 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~-ia~~~~ 144 (271)
-+++|++++|+|+||+|||||++. +++.+.
T Consensus 519 ~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~ 549 (842)
T 2vf7_A 519 RFPLGVMTSVTGVSGSGKSTLVSQALVDALA 549 (842)
T ss_dssp EEESSSEEEEECCTTSSHHHHCCCCCHHHHH
T ss_pred EEcCCCEEEEEcCCCcCHHHHHHHHHHHHHH
Confidence 678999999999999999999997 666553
No 224
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.48 E-value=0.00013 Score=65.08 Aligned_cols=42 Identities=17% Similarity=0.094 Sum_probs=36.9
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCC
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 156 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e 156 (271)
-..+|.+++|.|+||+|||||+.++++...+.+++|.+++.+
T Consensus 52 ~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d 93 (341)
T 2p67_A 52 YCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVD 93 (341)
T ss_dssp GCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred ccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeec
Confidence 345899999999999999999999999999888888877654
No 225
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.48 E-value=0.00086 Score=62.97 Aligned_cols=40 Identities=33% Similarity=0.322 Sum_probs=33.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCC
Q 024152 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH 157 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~ 157 (271)
+..+++|+|+||+||||++..++..++..+.+|.+++.+.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~ 139 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADT 139 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccc
Confidence 3558999999999999999999999887777888887643
No 226
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.48 E-value=5.2e-05 Score=71.44 Aligned_cols=39 Identities=21% Similarity=0.142 Sum_probs=32.6
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEc
Q 024152 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID 154 (271)
Q Consensus 116 l~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~ 154 (271)
+++|++++|+|+||||||||++.+++.+.+..+.+.+-+
T Consensus 257 v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied 295 (511)
T 2oap_1 257 IEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIED 295 (511)
T ss_dssp HHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEES
T ss_pred HhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcC
Confidence 358999999999999999999999998877777544433
No 227
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.47 E-value=0.00045 Score=64.72 Aligned_cols=77 Identities=23% Similarity=0.470 Sum_probs=47.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHH-HHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGE-QALSLVDTLI 193 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~-e~~~~~~~l~ 193 (271)
|.++..-+.|.||||+|||++++.++... +.+.++++.. .+.. .+ ....+ .+...+.. .
T Consensus 234 g~~~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~vn~~-----~l~~-------~~----~g~~~~~~~~~f~~-A 293 (489)
T 3hu3_A 234 GVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGP-----EIMS-------KL----AGESESNLRKAFEE-A 293 (489)
T ss_dssp TCCCCCEEEEECSTTSSHHHHHHHHHHHC---SSEEEEEEHH-----HHHT-------SC----TTHHHHHHHHHHHH-H
T ss_pred CCCCCCcEEEECcCCCCHHHHHHHHHHHh---CCCEEEEEch-----Hhhh-------hh----cchhHHHHHHHHHH-H
Confidence 46677789999999999999999997654 4556666531 1110 00 00111 12222222 2
Q ss_pred hcCCccEEEEcchhhhcC
Q 024152 194 RSGSVDVVVVDSVAALVP 211 (271)
Q Consensus 194 ~~~~~~lvvID~l~~~~~ 211 (271)
....+..++||.+..+.+
T Consensus 294 ~~~~p~iLfLDEId~l~~ 311 (489)
T 3hu3_A 294 EKNAPAIIFIDELDAIAP 311 (489)
T ss_dssp HHTCSEEEEEESHHHHCB
T ss_pred HhcCCcEEEecchhhhcc
Confidence 345678999999988875
No 228
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.46 E-value=6.8e-05 Score=59.54 Aligned_cols=27 Identities=22% Similarity=0.438 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHh
Q 024152 118 KGRVVEIYGPEASGKTTLALHVIAEAQ 144 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTtl~~~ia~~~~ 144 (271)
.|.+++|.|+|||||||++..++....
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 467999999999999999999988653
No 229
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.45 E-value=0.0012 Score=59.75 Aligned_cols=76 Identities=25% Similarity=0.353 Sum_probs=45.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHhcC
Q 024152 117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSG 196 (271)
Q Consensus 117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~~~ 196 (271)
.++.-++|.|+||+|||+|+..++... +..+++++........ .| .. +..+..+.......
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~~~---~~~~~~v~~~~l~~~~----~g-----------~~-~~~~~~~~~~a~~~ 206 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAAES---NATFFNISAASLTSKY----VG-----------EG-EKLVRALFAVAREL 206 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHHT---TCEEEEECSCCC----------------------C-HHHHHHHHHHHHHS
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhh---cCcEEEeeHHHhhccc----cc-----------hH-HHHHHHHHHHHHhc
Confidence 356789999999999999999997653 4566666654332210 00 01 12222222223345
Q ss_pred CccEEEEcchhhhcC
Q 024152 197 SVDVVVVDSVAALVP 211 (271)
Q Consensus 197 ~~~lvvID~l~~~~~ 211 (271)
.+.+++||.+..+..
T Consensus 207 ~~~il~iDEid~l~~ 221 (389)
T 3vfd_A 207 QPSIIFIDQVDSLLC 221 (389)
T ss_dssp SSEEEEEETGGGGC-
T ss_pred CCeEEEEECchhhcc
Confidence 678999999988764
No 230
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.45 E-value=9.1e-05 Score=61.44 Aligned_cols=38 Identities=29% Similarity=0.375 Sum_probs=34.1
Q ss_pred cHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152 104 SFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 104 ~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
+..|...+. |+|+...++|+||||+||||+++.++..+
T Consensus 45 ~~~l~~~~~--~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 45 LGALKSFLK--GTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHHH--TCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHh--cCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 677888887 89988889999999999999999998876
No 231
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.45 E-value=5.4e-05 Score=66.52 Aligned_cols=36 Identities=14% Similarity=0.204 Sum_probs=30.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEE
Q 024152 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVF 152 (271)
Q Consensus 116 l~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~ 152 (271)
+..|++++|+|+||+|||||++.++ ...+..|.|.+
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~ 197 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSE 197 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC--
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-HhhCccccccc
Confidence 3368999999999999999999999 77778887655
No 232
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.43 E-value=8.4e-05 Score=59.87 Aligned_cols=27 Identities=30% Similarity=0.443 Sum_probs=25.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 024152 120 RVVEIYGPEASGKTTLALHVIAEAQRQ 146 (271)
Q Consensus 120 ~li~I~G~~G~GKTtl~~~ia~~~~~~ 146 (271)
++++|+|++|||||||+..+++...+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 579999999999999999999999987
No 233
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.42 E-value=0.00017 Score=58.81 Aligned_cols=36 Identities=17% Similarity=0.185 Sum_probs=31.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcC
Q 024152 120 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 155 (271)
Q Consensus 120 ~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~ 155 (271)
..+.|.|+||+|||+|+..++..+...+.+++|++.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~ 90 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYV 90 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEh
Confidence 678999999999999999999988877778888764
No 234
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.41 E-value=9.3e-05 Score=59.38 Aligned_cols=30 Identities=23% Similarity=0.367 Sum_probs=26.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQR 145 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~ 145 (271)
.+.+| +++|+|+||+||||++..|...+..
T Consensus 23 ~~~~g-~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 23 PFSKG-FTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp ECCSS-EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred ecCCC-cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 46678 9999999999999999999887653
No 235
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.40 E-value=7.8e-05 Score=61.26 Aligned_cols=29 Identities=34% Similarity=0.312 Sum_probs=26.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
-+++|.+++|.|+||+||||++..++...
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 57789999999999999999999988754
No 236
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.40 E-value=6.4e-05 Score=69.13 Aligned_cols=34 Identities=18% Similarity=0.207 Sum_probs=28.1
Q ss_pred HHHHhcCCCCCCCcE--EEEEcCCCCcHHHHHHHHHHH
Q 024152 107 LDIALGTGGLPKGRV--VEIYGPEASGKTTLALHVIAE 142 (271)
Q Consensus 107 LD~~l~~GGl~~G~l--i~I~G~~G~GKTtl~~~ia~~ 142 (271)
|+.+.- -+++|++ ++|+|+||+|||||++.+++.
T Consensus 30 L~~vsl--~i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 30 DQLVNK--SVSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp HHHHHH--SCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred cCCCce--EecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 554443 6779999 999999999999999999885
No 237
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.38 E-value=0.00036 Score=65.47 Aligned_cols=36 Identities=39% Similarity=0.506 Sum_probs=28.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcC
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 155 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~ 155 (271)
-+++| ++|+||||+|||+|++.+++... .+.++++.
T Consensus 62 ~ip~G--vLL~GppGtGKTtLaraIa~~~~---~~~i~i~g 97 (499)
T 2dhr_A 62 RIPKG--VLLVGPPGVGKTHLARAVAGEAR---VPFITASG 97 (499)
T ss_dssp CCCSE--EEEECSSSSSHHHHHHHHHHHTT---CCEEEEEG
T ss_pred CCCce--EEEECCCCCCHHHHHHHHHHHhC---CCEEEEeh
Confidence 45566 99999999999999999998763 34455654
No 238
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.36 E-value=0.0001 Score=62.39 Aligned_cols=25 Identities=32% Similarity=0.384 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 024152 118 KGRVVEIYGPEASGKTTLALHVIAE 142 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTtl~~~ia~~ 142 (271)
++++++|.|+|||||||+++.++..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~ 50 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQN 50 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999999943
No 239
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.34 E-value=0.00022 Score=60.02 Aligned_cols=38 Identities=24% Similarity=0.273 Sum_probs=32.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEE
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI 153 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~ 153 (271)
...+|.++.|.|+||+||||++..++..... +..++..
T Consensus 22 ~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 22 SNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp CCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred ecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 5669999999999999999999999998887 6665543
No 240
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.34 E-value=0.00023 Score=60.30 Aligned_cols=28 Identities=50% Similarity=0.723 Sum_probs=24.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHh
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQ 144 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~ 144 (271)
.+++| ++|.||||+|||||++.+++...
T Consensus 47 ~~~~g--~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 47 RIPKG--VLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp CCCSE--EEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCCe--EEEECCCCCCHHHHHHHHHHHhC
Confidence 56677 99999999999999999998764
No 241
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.34 E-value=0.00051 Score=60.26 Aligned_cols=32 Identities=22% Similarity=0.299 Sum_probs=26.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcC
Q 024152 119 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 155 (271)
Q Consensus 119 G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~ 155 (271)
|.++.|.|++|+|||||+..++... + ++|++.
T Consensus 31 ~~~v~i~G~~G~GKT~Ll~~~~~~~----~-~~~~~~ 62 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLLRAFLNER----P-GILIDC 62 (350)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHS----S-EEEEEH
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHc----C-cEEEEe
Confidence 4799999999999999999988654 2 677764
No 242
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.34 E-value=7.1e-05 Score=67.36 Aligned_cols=34 Identities=26% Similarity=0.305 Sum_probs=31.0
Q ss_pred CCCCC--CcEEEEEcCCCCcHHHHHHHHHHHHhhcC
Q 024152 114 GGLPK--GRVVEIYGPEASGKTTLALHVIAEAQRQG 147 (271)
Q Consensus 114 GGl~~--G~li~I~G~~G~GKTtl~~~ia~~~~~~~ 147 (271)
--+.+ |+.++|+|+||||||||++.+++...+..
T Consensus 163 ~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~ 198 (365)
T 1lw7_A 163 KEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTS 198 (365)
T ss_dssp TTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred HHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 36677 99999999999999999999999988876
No 243
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.34 E-value=4.9e-05 Score=66.71 Aligned_cols=36 Identities=17% Similarity=0.161 Sum_probs=28.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEE
Q 024152 117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVF 152 (271)
Q Consensus 117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~ 152 (271)
..|++++|.|+||+|||||++.+++...+..|.+.+
T Consensus 167 l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~ 202 (301)
T 1u0l_A 167 LKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSE 202 (301)
T ss_dssp HSSSEEEEECSTTSSHHHHHHHHSTTCCCC------
T ss_pred hcCCeEEEECCCCCcHHHHHHHhcccccccccceec
Confidence 368999999999999999999999998888887655
No 244
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.33 E-value=0.00014 Score=59.94 Aligned_cols=28 Identities=7% Similarity=0.299 Sum_probs=25.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHHh
Q 024152 117 PKGRVVEIYGPEASGKTTLALHVIAEAQ 144 (271)
Q Consensus 117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~ 144 (271)
.+|.+++|+||+|+|||||+..++....
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3799999999999999999999987653
No 245
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.32 E-value=0.0019 Score=53.07 Aligned_cols=124 Identities=17% Similarity=0.191 Sum_probs=72.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC-CC---HHHHHHcCCcCCcceecCCCC---HH-------HH
Q 024152 120 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA-LD---PSLAETIGVKTENLLLAQPDC---GE-------QA 185 (271)
Q Consensus 120 ~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~-~~---~~~~~~~g~~~~~~~~~~~~~---~~-------e~ 185 (271)
.++.|.+.||.||||.+.-++..++..+.+|+|+..-.. .. ......+++...........+ .+ ..
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~ 108 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAV 108 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence 478888999999999999999999999889999864322 11 233444443322211111111 11 12
Q ss_pred HHHHHHHHhcCCccEEEEcchhhhcCCCccCCccchhhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEccccccc
Q 024152 186 LSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVFSIN 259 (271)
Q Consensus 186 ~~~~~~l~~~~~~~lvvID~l~~~~~~~~l~~~~g~~~~~~~~~~l~~~~r~L~~lake~~~~Vi~~sql~~~~ 259 (271)
+..+++.+.....+++|+|.+.......-+. ..+.+..|. .+-.+..||++.......
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al~~g~l~--------------~~ev~~~l~--~Rp~~~~vIlTGr~ap~~ 166 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMVAYDYLP--------------LEEVISALN--ARPGHQTVIITGRGCHRD 166 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHTTSSC--------------HHHHHHHHH--TSCTTCEEEEECSSCCHH
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccccCCCCC--------------HHHHHHHHH--hCcCCCEEEEECCCCcHH
Confidence 3334445556779999999997653211111 112333331 244578899988776443
No 246
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.31 E-value=0.00083 Score=60.49 Aligned_cols=89 Identities=15% Similarity=0.139 Sum_probs=54.7
Q ss_pred CCcEEEE--EcCCCCcHHHHHHHHHHHHhhc------CCeEEEEcCCCCCCH-----HHHHHcCCcCCcceecCCCCHHH
Q 024152 118 KGRVVEI--YGPEASGKTTLALHVIAEAQRQ------GGYCVFIDAEHALDP-----SLAETIGVKTENLLLAQPDCGEQ 184 (271)
Q Consensus 118 ~G~li~I--~G~~G~GKTtl~~~ia~~~~~~------~g~v~~~~~e~~~~~-----~~~~~~g~~~~~~~~~~~~~~~e 184 (271)
.+..+.| .|++|+|||||+..++...... +..++|++....... .+...++.... ....+..+
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~~~~~~~~ 124 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQ----VRGAPALD 124 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCC----CTTCCHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCC----CCCCCHHH
Confidence 4567888 9999999999999999877653 335777774322221 22334443221 01223455
Q ss_pred HHHHHHHHHh-cCCccEEEEcchhhhc
Q 024152 185 ALSLVDTLIR-SGSVDVVVVDSVAALV 210 (271)
Q Consensus 185 ~~~~~~~l~~-~~~~~lvvID~l~~~~ 210 (271)
+...+..... .....+++||.++.+.
T Consensus 125 ~~~~l~~~l~~~~~~~llvlDe~~~l~ 151 (412)
T 1w5s_A 125 ILKALVDNLYVENHYLLVILDEFQSML 151 (412)
T ss_dssp HHHHHHHHHHHHTCEEEEEEESTHHHH
T ss_pred HHHHHHHHHHhcCCeEEEEEeCHHHHh
Confidence 5554444332 3457799999998875
No 247
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.31 E-value=0.002 Score=56.43 Aligned_cols=67 Identities=15% Similarity=0.185 Sum_probs=43.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHhc---
Q 024152 119 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRS--- 195 (271)
Q Consensus 119 G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~~--- 195 (271)
..++.+.||||+|||+++..++... +..+++++... ...+.+...+......
T Consensus 48 ~~~~L~~G~~G~GKT~la~~la~~l---~~~~~~i~~~~----------------------~~~~~i~~~~~~~~~~~~~ 102 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVAKALCHDV---NADMMFVNGSD----------------------CKIDFVRGPLTNFASAASF 102 (324)
T ss_dssp CSEEEECSSTTSSHHHHHHHHHHHT---TEEEEEEETTT----------------------CCHHHHHTHHHHHHHBCCC
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHHh---CCCEEEEcccc----------------------cCHHHHHHHHHHHHhhccc
Confidence 3578999999999999999998765 33566665322 1123333333332221
Q ss_pred -CCccEEEEcchhhhc
Q 024152 196 -GSVDVVVVDSVAALV 210 (271)
Q Consensus 196 -~~~~lvvID~l~~~~ 210 (271)
...++++||.+..+.
T Consensus 103 ~~~~~vliiDEi~~l~ 118 (324)
T 3u61_B 103 DGRQKVIVIDEFDRSG 118 (324)
T ss_dssp SSCEEEEEEESCCCGG
T ss_pred CCCCeEEEEECCcccC
Confidence 257899999987764
No 248
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.30 E-value=0.00015 Score=59.58 Aligned_cols=28 Identities=29% Similarity=0.436 Sum_probs=25.5
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152 116 LPKGRVVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 116 l~~G~li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
..+|.+++|+|+||+||||++..++...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 5589999999999999999999998765
No 249
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.28 E-value=0.00015 Score=61.80 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 024152 117 PKGRVVEIYGPEASGKTTLALHVIAE 142 (271)
Q Consensus 117 ~~G~li~I~G~~G~GKTtl~~~ia~~ 142 (271)
++|.+++|.|+|||||||+++.++..
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~ 50 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAES 50 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 48999999999999999999999943
No 250
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.27 E-value=0.00035 Score=56.32 Aligned_cols=39 Identities=23% Similarity=0.150 Sum_probs=29.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEE
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI 153 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~ 153 (271)
|...-.+++|+|++|+|||||+..++......+.++..+
T Consensus 2 ~~~~~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i 40 (174)
T 1np6_A 2 GKTMIPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLI 40 (174)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCcceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEE
Confidence 344556899999999999999999999877665444444
No 251
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.26 E-value=0.00026 Score=56.81 Aligned_cols=37 Identities=22% Similarity=0.328 Sum_probs=27.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEc
Q 024152 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID 154 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~ 154 (271)
+|.++.|.|+||+||||++..++......+-...+++
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~ 38 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVS 38 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEe
Confidence 3579999999999999999999987654332234444
No 252
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.26 E-value=0.00032 Score=60.38 Aligned_cols=28 Identities=50% Similarity=0.723 Sum_probs=24.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHh
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQ 144 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~ 144 (271)
-+++| ++|+||||+|||||++.+++...
T Consensus 71 ~~~~g--vll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 71 RIPKG--VLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp CCCCE--EEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCCe--EEEECCCcChHHHHHHHHHHHcC
Confidence 56677 99999999999999999998764
No 253
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.25 E-value=0.00024 Score=65.54 Aligned_cols=37 Identities=32% Similarity=0.372 Sum_probs=33.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCC
Q 024152 120 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 156 (271)
Q Consensus 120 ~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e 156 (271)
.+++|+|+||+||||++..++..++..+.+|++++..
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 5999999999999999999999999888889998865
No 254
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.24 E-value=0.00018 Score=57.76 Aligned_cols=26 Identities=35% Similarity=0.478 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152 118 KGRVVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
+|.+++|.|+|||||||++..++...
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 67899999999999999999998654
No 255
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.24 E-value=0.00032 Score=56.29 Aligned_cols=34 Identities=24% Similarity=0.206 Sum_probs=28.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEc
Q 024152 121 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID 154 (271)
Q Consensus 121 li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~ 154 (271)
+|.|.|+||+||||++..++..+...+-.+.+++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~ 36 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIIN 36 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEE
Confidence 6899999999999999999988765444566664
No 256
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.23 E-value=0.00033 Score=57.13 Aligned_cols=35 Identities=20% Similarity=0.217 Sum_probs=28.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEE
Q 024152 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI 153 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~ 153 (271)
+|.+++|.|+||+||||++..++......+ .++..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g-~~~~~ 37 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIELKR-DVYLT 37 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTTS-CEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhcC-CEEEe
Confidence 467999999999999999999998776544 55443
No 257
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=97.23 E-value=0.00031 Score=65.20 Aligned_cols=54 Identities=28% Similarity=0.517 Sum_probs=45.3
Q ss_pred CCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCC-eEEEE
Q 024152 97 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGG-YCVFI 153 (271)
Q Consensus 97 ~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g-~v~~~ 153 (271)
.+.+.||+..+|.++. +-+|+-++|.|++|+|||+|+..++.+.+...+ -++|.
T Consensus 134 ~e~l~TGir~ID~l~p---igkGQr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~ 188 (482)
T 2ck3_D 134 QEILVTGIKVVDLLAP---YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA 188 (482)
T ss_dssp CCEECCSCHHHHHHSC---EETTCEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEE
T ss_pred CcCCccceEEEecccc---cccCCeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEE
Confidence 4689999999999985 669999999999999999999999999765443 34443
No 258
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.22 E-value=6.3e-05 Score=74.69 Aligned_cols=31 Identities=39% Similarity=0.544 Sum_probs=28.3
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHHh
Q 024152 114 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQ 144 (271)
Q Consensus 114 GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~ 144 (271)
.|+.++..++|.||||+|||+|++.++....
T Consensus 506 ~~~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 506 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp CCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred cCCCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 4788999999999999999999999999873
No 259
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.22 E-value=0.00037 Score=59.62 Aligned_cols=38 Identities=11% Similarity=0.154 Sum_probs=30.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcC
Q 024152 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 155 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~ 155 (271)
++.+|.|.|.||+||||++..++..+...+-.+++++.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~ 40 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGS 40 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECc
Confidence 56799999999999999999999876655555554553
No 260
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.22 E-value=0.0018 Score=55.39 Aligned_cols=36 Identities=31% Similarity=0.217 Sum_probs=27.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEc
Q 024152 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID 154 (271)
Q Consensus 116 l~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~ 154 (271)
.++..-+.|.||||+|||+++..++... +.+.+.++
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~---~~~~~~i~ 96 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEES---NFPFIKIC 96 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHH---TCSEEEEE
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHh---CCCEEEEe
Confidence 3456689999999999999999998864 33444443
No 261
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.21 E-value=0.00025 Score=70.13 Aligned_cols=78 Identities=27% Similarity=0.392 Sum_probs=47.7
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHH-HHcCCcCCcceecCCCCHHHHHHHHHHH
Q 024152 114 GGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLA-ETIGVKTENLLLAQPDCGEQALSLVDTL 192 (271)
Q Consensus 114 GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~-~~~g~~~~~~~~~~~~~~~e~~~~~~~l 192 (271)
.|+.+..=++++||||+|||.++..+|.... .+ |+... ...+. ..+| .+ +..+..+-..
T Consensus 506 ~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~---~~--f~~v~---~~~l~s~~vG-----------es-e~~vr~lF~~ 565 (806)
T 3cf2_A 506 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ---AN--FISIK---GPELLTMWFG-----------ES-EANVREIFDK 565 (806)
T ss_dssp SCCCCCSCCEEESSTTSSHHHHHHHHHHTTT---CE--EEECC---HHHHHTTTCS-----------SC-HHHHHHHHHH
T ss_pred cCCCCCceEEEecCCCCCchHHHHHHHHHhC---Cc--eEEec---cchhhccccc-----------hH-HHHHHHHHHH
Confidence 4777777899999999999999999987653 22 33211 01111 1111 12 2333322233
Q ss_pred HhcCCccEEEEcchhhhcC
Q 024152 193 IRSGSVDVVVVDSVAALVP 211 (271)
Q Consensus 193 ~~~~~~~lvvID~l~~~~~ 211 (271)
.++..+..++||.+..+.+
T Consensus 566 Ar~~~P~IifiDEiDsl~~ 584 (806)
T 3cf2_A 566 ARQAAPCVLFFDELDSIAK 584 (806)
T ss_dssp HHTTCSEEEECSCGGGCC-
T ss_pred HHHcCCceeechhhhHHhh
Confidence 3456799999999998875
No 262
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.20 E-value=2.2e-05 Score=66.26 Aligned_cols=34 Identities=18% Similarity=0.155 Sum_probs=28.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEE
Q 024152 120 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI 153 (271)
Q Consensus 120 ~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~ 153 (271)
++++|.||||||||||+..|++...+..|.|.|.
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~ 61 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFR 61 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC---
T ss_pred cEEEEECCCCCCHHHHHHHHhcccccCCCeEEEC
Confidence 6888999999999999999999999888875543
No 263
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.19 E-value=0.0063 Score=53.50 Aligned_cols=43 Identities=23% Similarity=0.291 Sum_probs=30.5
Q ss_pred ccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHh
Q 024152 99 VVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQ 144 (271)
Q Consensus 99 ~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~ 144 (271)
|-..-+..|...+. .|-.+ . +.|.||||+||||+++.++..+.
T Consensus 41 g~~~~~~~l~~~l~-~~~~~-~-~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 41 AQDHAVTVLKKTLK-SANLP-H-MLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp SCCTTHHHHHHHTT-CTTCC-C-EEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh-cCCCC-E-EEEECCCCCCHHHHHHHHHHHhC
Confidence 33334556666665 22222 2 89999999999999999999865
No 264
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.16 E-value=0.00029 Score=56.10 Aligned_cols=26 Identities=15% Similarity=0.284 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152 118 KGRVVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
.+.++.|.|+||+||||++..++...
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 35799999999999999999988754
No 265
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.15 E-value=0.0032 Score=54.55 Aligned_cols=23 Identities=30% Similarity=0.205 Sum_probs=21.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHh
Q 024152 122 VEIYGPEASGKTTLALHVIAEAQ 144 (271)
Q Consensus 122 i~I~G~~G~GKTtl~~~ia~~~~ 144 (271)
+.|.||||+|||+++..++..+.
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l~ 67 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHELL 67 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhc
Confidence 89999999999999999998764
No 266
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.15 E-value=0.00032 Score=58.16 Aligned_cols=26 Identities=31% Similarity=0.431 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152 118 KGRVVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
.+.+++|.|+|||||||++..++...
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999999876
No 267
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.14 E-value=0.0012 Score=58.41 Aligned_cols=88 Identities=16% Similarity=0.098 Sum_probs=50.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHhhcC------C-eEEEEcCCCCCCH-----HHHHHc-CCcCCcceecCCCCHHH
Q 024152 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQG------G-YCVFIDAEHALDP-----SLAETI-GVKTENLLLAQPDCGEQ 184 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~------g-~v~~~~~e~~~~~-----~~~~~~-g~~~~~~~~~~~~~~~e 184 (271)
++..+.|.||||+|||++++.++..+.... . .++++++...... .+.+.+ |. + .......+.
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~---~--~~~~~~~~~ 118 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKE---N--LCGDISLEA 118 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCC---C----CCCCHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCC---C--CCchHHHHH
Confidence 667889999999999999999999886421 1 4566775443332 222333 21 1 111122333
Q ss_pred HHHHHHHH-HhcCCccEEEEcchhhhc
Q 024152 185 ALSLVDTL-IRSGSVDVVVVDSVAALV 210 (271)
Q Consensus 185 ~~~~~~~l-~~~~~~~lvvID~l~~~~ 210 (271)
+...+... .......++++|.+..+.
T Consensus 119 L~~~f~~~~~~~~~~~ii~lDE~d~l~ 145 (318)
T 3te6_A 119 LNFYITNVPKAKKRKTLILIQNPENLL 145 (318)
T ss_dssp HHHHHHHSCGGGSCEEEEEEECCSSSC
T ss_pred HHHHHHHhhhccCCceEEEEecHHHhh
Confidence 33333332 123456789999887664
No 268
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.14 E-value=5.7e-05 Score=61.78 Aligned_cols=29 Identities=17% Similarity=0.188 Sum_probs=25.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
.+++|..++|+|+||+|||||++.+++..
T Consensus 22 ~~~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 22 PSDTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp SCSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 47799999999999999999999998765
No 269
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.13 E-value=0.0042 Score=58.35 Aligned_cols=41 Identities=22% Similarity=0.189 Sum_probs=30.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHHhh--cCC--eEEEEcCC
Q 024152 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQR--QGG--YCVFIDAE 156 (271)
Q Consensus 116 l~~G~li~I~G~~G~GKTtl~~~ia~~~~~--~~g--~v~~~~~e 156 (271)
+.++.-++|+|.+|+|||++++.++..+.. ..+ .++.++..
T Consensus 164 L~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK 208 (512)
T 2ius_A 164 LAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPK 208 (512)
T ss_dssp GGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCS
T ss_pred cccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCc
Confidence 557889999999999999999999876543 233 34445543
No 270
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.13 E-value=0.00031 Score=55.38 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 024152 121 VVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 121 li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
+++|.|+|||||||++..++...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 78999999999999999998765
No 271
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.12 E-value=0.0006 Score=55.82 Aligned_cols=37 Identities=16% Similarity=0.343 Sum_probs=29.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEE
Q 024152 117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI 153 (271)
Q Consensus 117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~ 153 (271)
.+|.+|+|.|+|||||||++..++..+...+-.+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~ 43 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELL 43 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEe
Confidence 3688999999999999999999998876554454433
No 272
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=97.12 E-value=0.00036 Score=65.01 Aligned_cols=55 Identities=22% Similarity=0.424 Sum_probs=45.9
Q ss_pred CCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcC-CeEEEEc
Q 024152 97 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQG-GYCVFID 154 (271)
Q Consensus 97 ~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~-g~v~~~~ 154 (271)
.+.+.||+..+|.++. +-+|+-++|.|++|+|||+|+..++.+.+... +-++|..
T Consensus 146 ~e~l~TGirvID~l~p---igkGqr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~~ 201 (498)
T 1fx0_B 146 LSIFETGIKVVNLLAP---YRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGG 201 (498)
T ss_dssp CCCCCCSCTTHHHHSC---CCTTCCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEEE
T ss_pred ccccccceeEeeeecc---cccCCeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEEE
Confidence 4678999999999986 66999999999999999999999999976543 3344443
No 273
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.11 E-value=0.00058 Score=54.84 Aligned_cols=35 Identities=34% Similarity=0.343 Sum_probs=29.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEc
Q 024152 120 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID 154 (271)
Q Consensus 120 ~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~ 154 (271)
.++.|+|++|+|||||+..++..+...+.+|..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 47999999999999999999998887766666665
No 274
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.10 E-value=0.00033 Score=57.16 Aligned_cols=25 Identities=16% Similarity=0.302 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152 119 GRVVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 119 G~li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
..+++|.|+|||||||++..++...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998876
No 275
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.10 E-value=0.00035 Score=60.97 Aligned_cols=30 Identities=17% Similarity=0.278 Sum_probs=27.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 024152 117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQ 146 (271)
Q Consensus 117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~~~ 146 (271)
.++.+++|+|++|||||||+..++....+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~ 58 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK 58 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 478899999999999999999999988764
No 276
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.09 E-value=0.0034 Score=59.37 Aligned_cols=92 Identities=11% Similarity=0.099 Sum_probs=55.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHH----HHhhcCCeEEEEcCCCCC--C-----HHHHHHcCCcCC--cceecCCCCHHH
Q 024152 118 KGRVVEIYGPEASGKTTLALHVIA----EAQRQGGYCVFIDAEHAL--D-----PSLAETIGVKTE--NLLLAQPDCGEQ 184 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTtl~~~ia~----~~~~~~g~v~~~~~e~~~--~-----~~~~~~~g~~~~--~~~~~~~~~~~e 184 (271)
...++.|.|..|+||||||..++. .+...-..++|++..... . ..+...++.... .+......+.++
T Consensus 151 ~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~ 230 (549)
T 2a5y_B 151 DSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVV 230 (549)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHHHhcCcccccccccccccHHH
Confidence 457999999999999999999885 233333456788654432 1 123444443321 111122234556
Q ss_pred HHHHHHHHHhcCCccEEEEcchhhh
Q 024152 185 ALSLVDTLIRSGSVDVVVVDSVAAL 209 (271)
Q Consensus 185 ~~~~~~~l~~~~~~~lvvID~l~~~ 209 (271)
+...++......+.-++|+|.+...
T Consensus 231 l~~~l~~~L~~~kr~LlVLDdv~~~ 255 (549)
T 2a5y_B 231 LKRMICNALIDRPNTLFVFDDVVQE 255 (549)
T ss_dssp HHHHHHHHHTTSTTEEEEEEEECCH
T ss_pred HHHHHHHHHcCCCcEEEEEECCCCc
Confidence 6666666554333678999987543
No 277
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.09 E-value=0.00013 Score=69.62 Aligned_cols=38 Identities=24% Similarity=0.195 Sum_probs=32.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcC
Q 024152 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 155 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~ 155 (271)
.+.+++|.|+||+||||++..++..+...+.+|++...
T Consensus 203 ~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~Ap 240 (574)
T 3e1s_A 203 GHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAP 240 (574)
T ss_dssp TCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred hCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecC
Confidence 36799999999999999999999888877778777654
No 278
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.09 E-value=0.0023 Score=51.86 Aligned_cols=81 Identities=17% Similarity=0.246 Sum_probs=51.3
Q ss_pred EEEEE-cCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHhcCCcc
Q 024152 121 VVEIY-GPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVD 199 (271)
Q Consensus 121 li~I~-G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~ 199 (271)
++.|+ +..|+||||++.+++..++..+.+|++++...... ....++.....+.+..... +.+...+..+. ...+
T Consensus 3 vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~--~~~~~~~~~~~~~~~~~~~-~~l~~~l~~l~--~~yD 77 (206)
T 4dzz_A 3 VISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMS--LTNWSKAGKAAFDVFTAAS-EKDVYGIRKDL--ADYD 77 (206)
T ss_dssp EEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCH--HHHHHTTSCCSSEEEECCS-HHHHHTHHHHT--TTSS
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCC--HHHHHhcCCCCCcEEecCc-HHHHHHHHHhc--CCCC
Confidence 45555 77899999999999999998888999999763322 2222232333333332222 44444444443 3589
Q ss_pred EEEEcch
Q 024152 200 VVVVDSV 206 (271)
Q Consensus 200 lvvID~l 206 (271)
+++||..
T Consensus 78 ~viiD~~ 84 (206)
T 4dzz_A 78 FAIVDGA 84 (206)
T ss_dssp EEEEECC
T ss_pred EEEEECC
Confidence 9999964
No 279
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.09 E-value=0.00068 Score=55.42 Aligned_cols=36 Identities=19% Similarity=0.236 Sum_probs=29.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeE
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYC 150 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v 150 (271)
...+|.+++|.|+|||||||++..++..+....-.+
T Consensus 6 ~~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~ 41 (212)
T 2wwf_A 6 DKKKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV 41 (212)
T ss_dssp CCBCSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred hhhcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 345788999999999999999999998765443344
No 280
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.07 E-value=0.00033 Score=62.19 Aligned_cols=24 Identities=42% Similarity=0.472 Sum_probs=22.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHH
Q 024152 120 RVVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 120 ~li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
+.++|.||||+|||||++.+++..
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 679999999999999999999987
No 281
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.07 E-value=0.00043 Score=55.83 Aligned_cols=27 Identities=41% Similarity=0.556 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 024152 116 LPKGRVVEIYGPEASGKTTLALHVIAE 142 (271)
Q Consensus 116 l~~G~li~I~G~~G~GKTtl~~~ia~~ 142 (271)
.++|.+++|.|+|||||||++..++..
T Consensus 7 ~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 7 QPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 457889999999999999999998875
No 282
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.06 E-value=0.00031 Score=59.99 Aligned_cols=37 Identities=24% Similarity=0.234 Sum_probs=30.0
Q ss_pred HHHHHhcCCCCCC---CcEEEEEcCCCCcHHHHHHHHHHHHh
Q 024152 106 ALDIALGTGGLPK---GRVVEIYGPEASGKTTLALHVIAEAQ 144 (271)
Q Consensus 106 ~LD~~l~~GGl~~---G~li~I~G~~G~GKTtl~~~ia~~~~ 144 (271)
-|+.+.- -+.+ |++++|.|+|||||||++..++....
T Consensus 34 ~l~~~~~--~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 34 ILKKKAE--EVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp HHHHHHH--TTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred hhhhhhh--hhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4444443 5668 99999999999999999999998663
No 283
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.05 E-value=0.0011 Score=58.08 Aligned_cols=42 Identities=21% Similarity=0.166 Sum_probs=32.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC
Q 024152 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL 159 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~ 159 (271)
.+.-+.|.|+||+|||+++..++......+++.++++.....
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~ 65 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALN 65 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCC
T ss_pred CCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCC
Confidence 345688999999999999999988766556666777655443
No 284
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.05 E-value=0.00068 Score=59.59 Aligned_cols=37 Identities=19% Similarity=0.285 Sum_probs=32.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHHh-hcCCeEEEEcC
Q 024152 119 GRVVEIYGPEASGKTTLALHVIAEAQ-RQGGYCVFIDA 155 (271)
Q Consensus 119 G~li~I~G~~G~GKTtl~~~ia~~~~-~~~g~v~~~~~ 155 (271)
+.-+.|.||||+|||+|+..++..+. ..+.+|+|+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~ 189 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHF 189 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEH
Confidence 67899999999999999999999888 77778888764
No 285
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.05 E-value=0.0023 Score=59.21 Aligned_cols=66 Identities=24% Similarity=0.274 Sum_probs=41.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHH---HHHHHHHHHHhcC
Q 024152 120 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGE---QALSLVDTLIRSG 196 (271)
Q Consensus 120 ~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~---e~~~~~~~l~~~~ 196 (271)
.-++|.||||+|||||+..++.... ...+.++.. ..... +.+..+.......
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~---~~f~~l~a~----------------------~~~~~~ir~~~~~a~~~~~~~ 105 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYAN---ADVERISAV----------------------TSGVKEIREAIERARQNRNAG 105 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTT---CEEEEEETT----------------------TCCHHHHHHHHHHHHHHHHTT
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhC---CCeEEEEec----------------------cCCHHHHHHHHHHHHHhhhcC
Confidence 4599999999999999999988653 232333321 11222 2333333333345
Q ss_pred CccEEEEcchhhhc
Q 024152 197 SVDVVVVDSVAALV 210 (271)
Q Consensus 197 ~~~lvvID~l~~~~ 210 (271)
...+++||.+..+.
T Consensus 106 ~~~iLfIDEI~~l~ 119 (447)
T 3pvs_A 106 RRTILFVDEVHRFN 119 (447)
T ss_dssp CCEEEEEETTTCC-
T ss_pred CCcEEEEeChhhhC
Confidence 67899999997764
No 286
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.05 E-value=0.00035 Score=55.51 Aligned_cols=22 Identities=36% Similarity=0.466 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 024152 120 RVVEIYGPEASGKTTLALHVIA 141 (271)
Q Consensus 120 ~li~I~G~~G~GKTtl~~~ia~ 141 (271)
.++.|.|+||+||||++..++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4799999999999999999887
No 287
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=97.04 E-value=0.00048 Score=62.42 Aligned_cols=54 Identities=17% Similarity=0.162 Sum_probs=44.6
Q ss_pred CccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcC-C-eEEEEc
Q 024152 98 PVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQG-G-YCVFID 154 (271)
Q Consensus 98 ~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~-g-~v~~~~ 154 (271)
+.+.||+..+|.++. +-+|+-.+|.|++|+|||+|+.+|+.++.... + .++|..
T Consensus 157 e~~~tGiraID~l~P---igrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~V~~l 212 (427)
T 3l0o_A 157 DPKIYSTRLIDLFAP---IGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIRIILL 212 (427)
T ss_dssp STTCHHHHHHHHHSC---CBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred cchhccchhhhhccc---ccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeEEEEEE
Confidence 567899999999986 66999999999999999999999999887543 3 445543
No 288
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.01 E-value=0.00047 Score=53.34 Aligned_cols=25 Identities=20% Similarity=0.033 Sum_probs=20.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152 119 GRVVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 119 G~li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
+.-+.|.|+||+|||+++..++...
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CCcEEEECCCCccHHHHHHHHHHhC
Confidence 3458899999999999998877543
No 289
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.01 E-value=0.0014 Score=63.74 Aligned_cols=30 Identities=30% Similarity=0.295 Sum_probs=26.5
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHHhh
Q 024152 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQR 145 (271)
Q Consensus 116 l~~G~li~I~G~~G~GKTtl~~~ia~~~~~ 145 (271)
++++..++|+|++|+|||||+..+++....
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~ 35 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGA 35 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCC
Confidence 568999999999999999999999976553
No 290
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.00 E-value=0.00037 Score=58.29 Aligned_cols=29 Identities=28% Similarity=0.392 Sum_probs=26.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
-+.+..+++|.|||||||+|.|..++...
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 56689999999999999999999998765
No 291
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.00 E-value=0.00051 Score=55.06 Aligned_cols=26 Identities=15% Similarity=0.181 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152 118 KGRVVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
.+.+++|.|+|||||||++..++...
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999998765
No 292
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.99 E-value=0.00054 Score=55.26 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152 118 KGRVVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
++.+++|.|+|||||||++..++...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 67899999999999999999998755
No 293
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=96.99 E-value=0.0027 Score=59.21 Aligned_cols=55 Identities=29% Similarity=0.466 Sum_probs=41.8
Q ss_pred CCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEc
Q 024152 97 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID 154 (271)
Q Consensus 97 ~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~ 154 (271)
-+.+.||+..+|.++. +-+|+-.+|.|++|+|||++++....+....+..++|..
T Consensus 143 ~epl~TGikaID~l~P---igrGQR~~Ifg~~g~GKT~l~l~~I~n~~~~dv~~V~~~ 197 (513)
T 3oaa_A 143 DQPVQTGYKAVDSMIP---IGRGQRELIIGDRQTGKTALAIDAIINQRDSGIKCIYVA 197 (513)
T ss_dssp CCBCCCSCHHHHHHSC---CBTTCBCEEEESSSSSHHHHHHHHHHTTSSSSCEEEEEE
T ss_pred Ccccccceeeeccccc---cccCCEEEeecCCCCCcchHHHHHHHhhccCCceEEEEE
Confidence 4678999999999986 669999999999999999997544443333333455554
No 294
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.98 E-value=0.00038 Score=54.71 Aligned_cols=20 Identities=35% Similarity=0.473 Sum_probs=18.5
Q ss_pred cEEEEEcCCCCcHHHHHHHH
Q 024152 120 RVVEIYGPEASGKTTLALHV 139 (271)
Q Consensus 120 ~li~I~G~~G~GKTtl~~~i 139 (271)
.+++|.|+|||||||++..+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999988
No 295
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.98 E-value=0.00089 Score=56.64 Aligned_cols=40 Identities=20% Similarity=0.209 Sum_probs=34.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCC
Q 024152 117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH 157 (271)
Q Consensus 117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~ 157 (271)
.+.-++++.|.+|+||||++.+++..++ .+.+|.+++.+.
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~ 51 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDT 51 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCS
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCC
Confidence 4567999999999999999999999998 777888888653
No 296
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.98 E-value=0.006 Score=53.58 Aligned_cols=64 Identities=20% Similarity=0.224 Sum_probs=39.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHhcCCcc
Q 024152 120 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSVD 199 (271)
Q Consensus 120 ~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~ 199 (271)
..+.|.|+||+|||+++..++... +.+.+.++.... ....++..... ......
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~---~~~~~~~~~~~~---------------------~~~~~~~~~~~---~~~~~~ 108 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEM---SANIKTTAAPMI---------------------EKSGDLAAILT---NLSEGD 108 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHT---TCCEEEEEGGGC---------------------CSHHHHHHHHH---TCCTTC
T ss_pred CeEEEECcCCCCHHHHHHHHHHHh---CCCeEEecchhc---------------------cchhHHHHHHH---hccCCC
Confidence 348999999999999999997653 334444432111 01222222221 234678
Q ss_pred EEEEcchhhhc
Q 024152 200 VVVVDSVAALV 210 (271)
Q Consensus 200 lvvID~l~~~~ 210 (271)
.++||.+..+.
T Consensus 109 vl~lDEi~~l~ 119 (338)
T 3pfi_A 109 ILFIDEIHRLS 119 (338)
T ss_dssp EEEEETGGGCC
T ss_pred EEEEechhhcC
Confidence 99999998775
No 297
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.97 E-value=0.00082 Score=59.75 Aligned_cols=26 Identities=19% Similarity=0.188 Sum_probs=23.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhh
Q 024152 120 RVVEIYGPEASGKTTLALHVIAEAQR 145 (271)
Q Consensus 120 ~li~I~G~~G~GKTtl~~~ia~~~~~ 145 (271)
..+.|.||+|+||||++..++.....
T Consensus 39 ~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 47899999999999999999887753
No 298
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=96.96 E-value=0.0014 Score=61.05 Aligned_cols=55 Identities=27% Similarity=0.458 Sum_probs=40.9
Q ss_pred CCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEc
Q 024152 97 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID 154 (271)
Q Consensus 97 ~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~ 154 (271)
-+.+.||+..+|.++. +-+|+-++|.|++|+|||+|++....+.+..+..++|..
T Consensus 143 ~epl~TGiraID~l~P---igrGQR~~Ifg~~g~GKT~Lal~~I~~~~~~dv~~V~~~ 197 (502)
T 2qe7_A 143 HEPLQTGIKAIDSMIP---IGRGQRELIIGDRQTGKTTIAIDTIINQKGQDVICIYVA 197 (502)
T ss_dssp CSBCCCSCHHHHHSSC---CBTTCBCEEEECSSSCHHHHHHHHHHGGGSCSEEEEEEE
T ss_pred CCccccceeecccccc---cccCCEEEEECCCCCCchHHHHHHHHHhhcCCcEEEEEE
Confidence 4678999999999986 669999999999999999997644433332222345544
No 299
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.95 E-value=0.00052 Score=55.11 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152 118 KGRVVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
++.+++|.|+|||||||++..++...
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999988654
No 300
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.95 E-value=0.00028 Score=57.86 Aligned_cols=33 Identities=21% Similarity=0.331 Sum_probs=26.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEE
Q 024152 121 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI 153 (271)
Q Consensus 121 li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~ 153 (271)
+++|.|++||||||++..++..+...+..|.++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~ 34 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATL 34 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 789999999999999999998887554444443
No 301
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.95 E-value=0.00058 Score=54.56 Aligned_cols=28 Identities=21% Similarity=0.227 Sum_probs=24.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152 116 LPKGRVVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 116 l~~G~li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
+..+.+++|.|+||+||||++..++...
T Consensus 8 ~~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 8 FMLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp TCCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 3467889999999999999999988765
No 302
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.95 E-value=0.0024 Score=63.71 Aligned_cols=39 Identities=26% Similarity=0.229 Sum_probs=32.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC
Q 024152 120 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA 158 (271)
Q Consensus 120 ~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~ 158 (271)
..+.|.||||+|||++++.++......+.+.++++....
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~ 627 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEY 627 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhc
Confidence 478999999999999999999988766667778875433
No 303
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.94 E-value=0.00046 Score=56.31 Aligned_cols=21 Identities=24% Similarity=0.281 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 024152 121 VVEIYGPEASGKTTLALHVIA 141 (271)
Q Consensus 121 li~I~G~~G~GKTtl~~~ia~ 141 (271)
+++|.|+|||||||++..++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999988
No 304
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.94 E-value=0.00045 Score=56.52 Aligned_cols=21 Identities=38% Similarity=0.412 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 024152 121 VVEIYGPEASGKTTLALHVIA 141 (271)
Q Consensus 121 li~I~G~~G~GKTtl~~~ia~ 141 (271)
+++|.|+|||||||++..++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999986
No 305
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.93 E-value=0.00054 Score=58.42 Aligned_cols=23 Identities=43% Similarity=0.774 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 024152 121 VVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 121 li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
+++|+|+||+|||||+..++...
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 78999999999999999998765
No 306
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.92 E-value=0.0011 Score=59.88 Aligned_cols=42 Identities=21% Similarity=0.262 Sum_probs=35.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC
Q 024152 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL 159 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~ 159 (271)
.+.-+.|+|++|+|||||++.++......++.+++++.....
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~~~~ 75 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPEREY 75 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESSCCS
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCCcCH
Confidence 566789999999999999999999888888888888865443
No 307
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.91 E-value=0.0056 Score=51.16 Aligned_cols=29 Identities=31% Similarity=0.386 Sum_probs=23.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHHh
Q 024152 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQ 144 (271)
Q Consensus 116 l~~G~li~I~G~~G~GKTtl~~~ia~~~~ 144 (271)
+..|+.+++.|++|+||||++..++....
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~ 101 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILDDF 101 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhcch
Confidence 34689999999999999998777765543
No 308
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.90 E-value=0.0011 Score=53.38 Aligned_cols=33 Identities=18% Similarity=0.283 Sum_probs=26.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEE
Q 024152 121 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI 153 (271)
Q Consensus 121 li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~ 153 (271)
+|+|.|++||||||++..++..+...+-.++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~ 34 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEe
Confidence 689999999999999999998876555555443
No 309
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.90 E-value=0.0029 Score=55.98 Aligned_cols=88 Identities=16% Similarity=0.061 Sum_probs=49.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHH--cCCcCCcceec-----CCCCHHHHHHHHHH
Q 024152 119 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAET--IGVKTENLLLA-----QPDCGEQALSLVDT 191 (271)
Q Consensus 119 G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~--~g~~~~~~~~~-----~~~~~~e~~~~~~~ 191 (271)
...+.+.||||+|||++++.++..+....... ........ .++. .+..++-..+. .....++++.....
T Consensus 24 ~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~---~~~c~~c~-~c~~~~~~~~~d~~~~~~~~~~~~~~i~~ir~l~~~ 99 (334)
T 1a5t_A 24 HHALLIQALPGMGDDALIYALSRYLLCQQPQG---HKSCGHCR-GCQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEK 99 (334)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHTCSSCBT---TBCCSCSH-HHHHHHHTCCTTEEEECCCTTCSSBCHHHHHHHHHH
T ss_pred ceeEEEECCCCchHHHHHHHHHHHHhCCCCCC---CCCCCCCH-HHHHHhcCCCCCEEEEeccccCCCCCHHHHHHHHHH
Confidence 34699999999999999999998776432110 00001111 1111 12112211121 12456677665555
Q ss_pred HHh---cCCccEEEEcchhhhc
Q 024152 192 LIR---SGSVDVVVVDSVAALV 210 (271)
Q Consensus 192 l~~---~~~~~lvvID~l~~~~ 210 (271)
+.. ..+.++++||....+.
T Consensus 100 ~~~~~~~~~~kvviIdead~l~ 121 (334)
T 1a5t_A 100 LNEHARLGGAKVVWVTDAALLT 121 (334)
T ss_dssp TTSCCTTSSCEEEEESCGGGBC
T ss_pred HhhccccCCcEEEEECchhhcC
Confidence 432 2357899999988775
No 310
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.90 E-value=0.0012 Score=58.99 Aligned_cols=39 Identities=18% Similarity=0.184 Sum_probs=33.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCC
Q 024152 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 156 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e 156 (271)
..-+++|+|+||+|||||+.+++......+.+|.+++..
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~D 116 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVD 116 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecC
Confidence 556899999999999999999999988777788887754
No 311
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.90 E-value=0.0011 Score=53.11 Aligned_cols=33 Identities=24% Similarity=0.369 Sum_probs=26.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEE
Q 024152 121 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI 153 (271)
Q Consensus 121 li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~ 153 (271)
+++|.|+|||||||++..++..+...+-.++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~ 34 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLY 34 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 689999999999999999998775544444443
No 312
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.88 E-value=0.00074 Score=55.90 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152 118 KGRVVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
+|.+++|.|+|||||||++..++...
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 56799999999999999999998765
No 313
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.86 E-value=0.00078 Score=54.71 Aligned_cols=26 Identities=27% Similarity=0.533 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152 118 KGRVVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
+|.+|+|.|++||||||++..++..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999988765
No 314
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=96.85 E-value=0.0089 Score=56.30 Aligned_cols=37 Identities=19% Similarity=0.167 Sum_probs=29.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEc
Q 024152 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID 154 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~ 154 (271)
...+|+++|.||+||||++..++..+....-.+.+|+
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s 70 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFN 70 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEec
Confidence 4569999999999999999999987765544455555
No 315
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.85 E-value=0.00055 Score=59.54 Aligned_cols=36 Identities=31% Similarity=0.415 Sum_probs=27.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcC
Q 024152 117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 155 (271)
Q Consensus 117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~ 155 (271)
.++.+++|+|+||+||||++..++.... +..++++.
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~---~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ---GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT---TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC---CCeEEEec
Confidence 3678999999999999999999876542 23466664
No 316
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.84 E-value=0.00058 Score=64.75 Aligned_cols=27 Identities=33% Similarity=0.524 Sum_probs=25.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHh
Q 024152 118 KGRVVEIYGPEASGKTTLALHVIAEAQ 144 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTtl~~~ia~~~~ 144 (271)
+|..++|.||||+|||||++.++....
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~ 133 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLG 133 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999999998774
No 317
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.84 E-value=0.00088 Score=54.55 Aligned_cols=27 Identities=26% Similarity=0.341 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152 117 PKGRVVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 117 ~~G~li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
..+.+|+|.|+||+||||++..++...
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999998765
No 318
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.82 E-value=0.00047 Score=58.65 Aligned_cols=38 Identities=29% Similarity=0.309 Sum_probs=28.9
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCC
Q 024152 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 156 (271)
Q Consensus 116 l~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e 156 (271)
.+++.++.|.|+|||||||++..++.... ..+++++.+
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~---~~~~~~~~D 66 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQ---GNIVIIDGD 66 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTT---TCCEEECGG
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcC---CCcEEEecH
Confidence 34678999999999999999999987653 234555543
No 319
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.81 E-value=0.004 Score=62.12 Aligned_cols=78 Identities=17% Similarity=0.219 Sum_probs=41.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhc-------CCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHH-HHHHHHH
Q 024152 120 RVVEIYGPEASGKTTLALHVIAEAQRQ-------GGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQ-ALSLVDT 191 (271)
Q Consensus 120 ~li~I~G~~G~GKTtl~~~ia~~~~~~-------~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e-~~~~~~~ 191 (271)
.-++|+||||+|||+++..++..+... +..+++++...... |.. .....++ +...+..
T Consensus 192 ~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~-------g~~-------~~g~~~~~l~~~~~~ 257 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA-------GAK-------YRGEFEERLKAVIQE 257 (854)
T ss_dssp CCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-------------------------CHHHHHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc-------cCc-------cchHHHHHHHHHHHH
Confidence 357899999999999999999988652 34566665422110 000 0012222 2233333
Q ss_pred HHhcCCccEEEEcchhhhcC
Q 024152 192 LIRSGSVDVVVVDSVAALVP 211 (271)
Q Consensus 192 l~~~~~~~lvvID~l~~~~~ 211 (271)
.....+..+++||.+..+.+
T Consensus 258 ~~~~~~~~iL~IDEi~~l~~ 277 (854)
T 1qvr_A 258 VVQSQGEVILFIDELHTVVG 277 (854)
T ss_dssp HHTTCSSEEEEECCC-----
T ss_pred HHhcCCCeEEEEecHHHHhc
Confidence 33233567999999988763
No 320
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.81 E-value=0.00054 Score=54.68 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=18.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152 118 KGRVVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
++.++.|.|.|||||||++..++...
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 56799999999999999999987643
No 321
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=96.81 E-value=0.0017 Score=61.66 Aligned_cols=102 Identities=17% Similarity=0.145 Sum_probs=56.6
Q ss_pred cHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHH---hh-cCCeEEEEcCCCCCCHH-------HHHHcCCcCC
Q 024152 104 SFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEA---QR-QGGYCVFIDAEHALDPS-------LAETIGVKTE 172 (271)
Q Consensus 104 ~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~---~~-~~g~v~~~~~e~~~~~~-------~~~~~g~~~~ 172 (271)
+..|...+. .+-....++.|.|++|+|||||+..++... .. ....++|++........ +...++...
T Consensus 133 l~~L~~~L~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~~~~~l~~l~~~l~~~~- 210 (591)
T 1z6t_A 133 VNAIQQKLS-KLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQNLCTRLDQDE- 210 (591)
T ss_dssp HHHHHHHHT-TSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHHHHHHHHHHHHHHCSSC-
T ss_pred HHHHHHHHh-cccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchHHHHHHHHHHHHHhcccc-
Confidence 445555554 112346799999999999999999987643 22 22357777643321111 112222100
Q ss_pred cceecCCCCHHHHHHHHHHHHhc-CCccEEEEcchh
Q 024152 173 NLLLAQPDCGEQALSLVDTLIRS-GSVDVVVVDSVA 207 (271)
Q Consensus 173 ~~~~~~~~~~~e~~~~~~~l~~~-~~~~lvvID~l~ 207 (271)
........+.++....++..... .+.-++|+|.+.
T Consensus 211 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~ 246 (591)
T 1z6t_A 211 SFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVW 246 (591)
T ss_dssp CSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEEC
T ss_pred ccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCC
Confidence 00111234556666666655443 356788898863
No 322
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.80 E-value=0.00068 Score=62.23 Aligned_cols=30 Identities=20% Similarity=0.287 Sum_probs=26.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHHhh
Q 024152 116 LPKGRVVEIYGPEASGKTTLALHVIAEAQR 145 (271)
Q Consensus 116 l~~G~li~I~G~~G~GKTtl~~~ia~~~~~ 145 (271)
+.+|++++|+||||+|||||+..|+....+
T Consensus 23 ~~~~~~~~i~G~nG~GKstll~ai~~~~~~ 52 (430)
T 1w1w_A 23 FGESNFTSIIGPNGSGKSNMMDAISFVLGV 52 (430)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 457899999999999999999999886653
No 323
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.80 E-value=0.00096 Score=55.94 Aligned_cols=29 Identities=31% Similarity=0.365 Sum_probs=24.9
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
..++|.+++|.|+||+||||++..++..+
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 46689999999999999999999998754
No 324
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.80 E-value=0.00072 Score=53.80 Aligned_cols=23 Identities=30% Similarity=0.322 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 024152 121 VVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 121 li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
.+.|.|+|||||||++..++...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998765
No 325
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.80 E-value=0.0026 Score=62.53 Aligned_cols=35 Identities=26% Similarity=0.266 Sum_probs=30.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcC
Q 024152 121 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 155 (271)
Q Consensus 121 li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~ 155 (271)
.+.|.||||+|||+++..++......+.+.++++.
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~ 557 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDM 557 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEec
Confidence 69999999999999999999988766667777764
No 326
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.79 E-value=0.00084 Score=54.34 Aligned_cols=24 Identities=21% Similarity=0.469 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 024152 121 VVEIYGPEASGKTTLALHVIAEAQ 144 (271)
Q Consensus 121 li~I~G~~G~GKTtl~~~ia~~~~ 144 (271)
+|+|.|++||||||++..++..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999988664
No 327
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.79 E-value=0.0009 Score=54.03 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152 118 KGRVVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
++.+++|.|+|||||||++..++...
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 56799999999999999999998765
No 328
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.77 E-value=0.0003 Score=62.07 Aligned_cols=25 Identities=36% Similarity=0.380 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152 119 GRVVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 119 G~li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
=.+++|.|++|+|||||++.+++..
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhc
Confidence 3589999999999999999999875
No 329
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.77 E-value=0.00085 Score=55.83 Aligned_cols=29 Identities=21% Similarity=0.205 Sum_probs=22.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
+..++.+++|.|+|||||||++..++...
T Consensus 3 ~~~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 3 ASARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp ----CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34567899999999999999999988643
No 330
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.76 E-value=0.0063 Score=52.94 Aligned_cols=66 Identities=18% Similarity=0.184 Sum_probs=41.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHhcCCc
Q 024152 119 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIRSGSV 198 (271)
Q Consensus 119 G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~ 198 (271)
...+.|.|+||+|||+++..++.... .++++++..... ...++...+.. .....
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~~---~~~~~~~~~~~~---------------------~~~~l~~~l~~--~~~~~ 91 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHELG---VNLRVTSGPAIE---------------------KPGDLAAILAN--SLEEG 91 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHHT---CCEEEECTTTCC---------------------SHHHHHHHHTT--TCCTT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHhC---CCEEEEeccccC---------------------ChHHHHHHHHH--hccCC
Confidence 35689999999999999999987652 345555432211 12233222211 02356
Q ss_pred cEEEEcchhhhc
Q 024152 199 DVVVVDSVAALV 210 (271)
Q Consensus 199 ~lvvID~l~~~~ 210 (271)
..++||.+..+.
T Consensus 92 ~~l~lDEi~~l~ 103 (324)
T 1hqc_A 92 DILFIDEIHRLS 103 (324)
T ss_dssp CEEEETTTTSCC
T ss_pred CEEEEECCcccc
Confidence 799999988764
No 331
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.75 E-value=0.001 Score=63.81 Aligned_cols=44 Identities=16% Similarity=0.166 Sum_probs=34.1
Q ss_pred HHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEE
Q 024152 105 FALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI 153 (271)
Q Consensus 105 ~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~ 153 (271)
..+...+. .|+.++|.||||+|||||++.+++...+..+..+++
T Consensus 51 ~~l~~~i~-----~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~ 94 (604)
T 3k1j_A 51 EVIKTAAN-----QKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILV 94 (604)
T ss_dssp HHHHHHHH-----TTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEE
T ss_pred hhcccccc-----CCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEE
Confidence 44555554 778999999999999999999999887665433444
No 332
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.75 E-value=0.00088 Score=60.31 Aligned_cols=28 Identities=21% Similarity=0.414 Sum_probs=24.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
-+++| +++|.||||+||||++..|+..+
T Consensus 20 ~~~~g-~~~i~G~NGaGKTTll~ai~~al 47 (365)
T 3qf7_A 20 EFQSG-ITVVEGPNGAGKSSLFEAISFAL 47 (365)
T ss_dssp ECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred ecCCC-eEEEECCCCCCHHHHHHHHHHHh
Confidence 35677 89999999999999999888654
No 333
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.75 E-value=0.0011 Score=51.93 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHH
Q 024152 120 RVVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 120 ~li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
.+++|.||||+||||++..|...+
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 399999999999999999887654
No 334
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.72 E-value=0.00097 Score=59.97 Aligned_cols=27 Identities=37% Similarity=0.630 Sum_probs=24.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAE 142 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~ 142 (271)
-+.+| +++|+||||+||||++..|...
T Consensus 23 ~~~~g-~~~i~G~nG~GKttll~ai~~~ 49 (359)
T 2o5v_A 23 NFPEG-VTGIYGENGAGKTNLLEAAYLA 49 (359)
T ss_dssp ECCSE-EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEcCC-eEEEECCCCCChhHHHHHHHHh
Confidence 56688 9999999999999999999874
No 335
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.70 E-value=0.00096 Score=53.40 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHH
Q 024152 120 RVVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 120 ~li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
.++.|.|+|||||||++..++...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 479999999999999999998765
No 336
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.68 E-value=0.0011 Score=54.75 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 024152 121 VVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 121 li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
+++|.|||||||+|.+..|+...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999998765
No 337
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.68 E-value=0.0011 Score=54.79 Aligned_cols=26 Identities=31% Similarity=0.201 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152 118 KGRVVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
.+.+|+|.|+|||||||++..++...
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999998765
No 338
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=96.65 E-value=0.021 Score=49.96 Aligned_cols=72 Identities=17% Similarity=0.119 Sum_probs=45.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHHhhc---CCeEEEEcCCCCCCHHHHHHcCCcCCcceecCCCCHHHHHHHHHHHHh-
Q 024152 119 GRVVEIYGPEASGKTTLALHVIAEAQRQ---GGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLIR- 194 (271)
Q Consensus 119 G~li~I~G~~G~GKTtl~~~ia~~~~~~---~g~v~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~l~~- 194 (271)
...+++.||||+||||++..++..+... ...+.+++.+. ....+++++........
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~--------------------~~~~id~ir~li~~~~~~ 77 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG--------------------ENIGIDDIRTIKDFLNYS 77 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS--------------------SCBCHHHHHHHHHHHTSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc--------------------CCCCHHHHHHHHHHHhhc
Confidence 4589999999999999999998753211 11233332110 12456666665554432
Q ss_pred --cCCccEEEEcchhhhc
Q 024152 195 --SGSVDVVVVDSVAALV 210 (271)
Q Consensus 195 --~~~~~lvvID~l~~~~ 210 (271)
..+.++++||....+.
T Consensus 78 p~~~~~kvviIdead~lt 95 (305)
T 2gno_A 78 PELYTRKYVIVHDCERMT 95 (305)
T ss_dssp CSSSSSEEEEETTGGGBC
T ss_pred cccCCceEEEeccHHHhC
Confidence 1346899999988775
No 339
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.65 E-value=0.0022 Score=53.33 Aligned_cols=37 Identities=24% Similarity=0.289 Sum_probs=30.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEE
Q 024152 117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI 153 (271)
Q Consensus 117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~ 153 (271)
.+|.+|.|.|++|+||||++..++..+...+-+|+..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 4688999999999999999999998887666566544
No 340
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.65 E-value=0.002 Score=56.16 Aligned_cols=40 Identities=23% Similarity=0.332 Sum_probs=35.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCC
Q 024152 117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 156 (271)
Q Consensus 117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e 156 (271)
.++.++.|+|..|+||||++.++|..++..+.+|++++..
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~D 78 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCD 78 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEES
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 3678999999999999999999999999888899999865
No 341
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=96.64 E-value=0.0012 Score=59.99 Aligned_cols=28 Identities=21% Similarity=0.194 Sum_probs=26.3
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHH
Q 024152 114 GGLPKGRVVEIYGPEASGKTTLALHVIA 141 (271)
Q Consensus 114 GGl~~G~li~I~G~~G~GKTtl~~~ia~ 141 (271)
|-+++|..++|+|+||+|||||++.+++
T Consensus 15 g~v~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 15 GRPGNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SSSSSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred ccccCCCEEEEECCCCCCHHHHHHHHHC
Confidence 3788999999999999999999999998
No 342
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.61 E-value=0.0015 Score=51.56 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHH
Q 024152 120 RVVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 120 ~li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
++++|.|.|||||||++..++..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998765
No 343
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.61 E-value=0.0014 Score=52.52 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152 119 GRVVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 119 G~li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
..+++|.|+|||||||++..++...
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999988754
No 344
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.59 E-value=0.011 Score=58.05 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=27.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcC
Q 024152 120 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 155 (271)
Q Consensus 120 ~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~ 155 (271)
.-+.|.||||+|||++++.++... +.+.+.++.
T Consensus 489 ~~~ll~G~~GtGKT~la~~la~~l---~~~~~~i~~ 521 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVTVQLSKAL---GIELLRFDM 521 (758)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH---TCEEEEEEG
T ss_pred eEEEEECCCCCcHHHHHHHHHHHh---cCCEEEEec
Confidence 368999999999999999999877 355666664
No 345
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.58 E-value=0.0014 Score=55.30 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152 119 GRVVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 119 G~li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
.-++.|.|+|||||||++..++..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998765
No 346
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.58 E-value=0.0015 Score=53.74 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 024152 121 VVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 121 li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
.++|.|+|||||||++..++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999997654
No 347
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.57 E-value=0.0014 Score=54.26 Aligned_cols=26 Identities=27% Similarity=0.258 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152 118 KGRVVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
+|-+++|.|+|||||||++..++...
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999998765
No 348
>4a8j_A Elongator complex protein 4; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_A
Probab=96.57 E-value=0.0006 Score=60.98 Aligned_cols=38 Identities=39% Similarity=0.474 Sum_probs=34.3
Q ss_pred CCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHH
Q 024152 97 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLAL 137 (271)
Q Consensus 97 ~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~ 137 (271)
-.-++||+++||.++|.||++.|.++.|.|+ |||+|+.
T Consensus 18 ~~~~stG~~~lD~llghgGlp~g~~~li~e~---~~t~~~~ 55 (361)
T 4a8j_A 18 QPTTSTGSADLDSILGHMGLPLGNSVLVEEQ---STTEFHS 55 (361)
T ss_dssp CEEECCSCHHHHHHTTSSSEETTCEEEEEEC---SSCCTHH
T ss_pred CeeeccCCccHHHHhccCCccCCcEEEEeCC---CCCcHHH
Confidence 3568999999999997579999999999998 8999995
No 349
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=96.56 E-value=0.0027 Score=59.29 Aligned_cols=45 Identities=27% Similarity=0.408 Sum_probs=38.1
Q ss_pred CCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHH-HHHHHHh
Q 024152 97 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLAL-HVIAEAQ 144 (271)
Q Consensus 97 ~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~-~ia~~~~ 144 (271)
-+.+.||+..+|.++. +-+|+-.+|.|++|+|||+|++ +|+....
T Consensus 143 ~epl~TGiraID~l~P---igrGQR~~I~g~~g~GKT~Lal~~I~~q~~ 188 (510)
T 2ck3_A 143 REPMQTGIKAVDSLVP---IGRGQRELIIGDRQTGKTSIAIDTIINQKR 188 (510)
T ss_dssp CSBCCCSCHHHHHHSC---CBTTCBCEEEESTTSSHHHHHHHHHHHTHH
T ss_pred Cccccccceeeccccc---cccCCEEEEecCCCCCchHHHHHHHHHHHh
Confidence 3678999999999986 6699999999999999999965 5555554
No 350
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.56 E-value=0.0016 Score=55.18 Aligned_cols=38 Identities=16% Similarity=0.301 Sum_probs=28.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHHhhc-----CCeEEEEcCC
Q 024152 119 GRVVEIYGPEASGKTTLALHVIAEAQRQ-----GGYCVFIDAE 156 (271)
Q Consensus 119 G~li~I~G~~G~GKTtl~~~ia~~~~~~-----~g~v~~~~~e 156 (271)
--+++|.|++||||||++..++..+... +..+++++..
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D 64 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQD 64 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecC
Confidence 3589999999999999999998854422 2346666654
No 351
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=96.56 E-value=0.0014 Score=60.49 Aligned_cols=46 Identities=20% Similarity=0.250 Sum_probs=40.4
Q ss_pred CCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh
Q 024152 97 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR 145 (271)
Q Consensus 97 ~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~ 145 (271)
-+.+.||+..+|.++. +-+|+-++|.|++|+|||+|+.+|+.....
T Consensus 132 ~e~l~TGiraID~l~p---igrGQr~~Ifgg~G~GKt~L~~~Ia~~~~~ 177 (465)
T 3vr4_D 132 DEFIQTGISAIDHLNT---LVRGQKLPVFSGSGLPHKELAAQIARQATV 177 (465)
T ss_dssp CCBCBCSCHHHHTTSC---CBTTCBCCEEECTTSCHHHHHHHHHHHCBC
T ss_pred ccccccCceEEecccc---cccCCEEEEeCCCCcChHHHHHHHHHHHHh
Confidence 3578899999999985 669999999999999999999998877654
No 352
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.55 E-value=0.0013 Score=53.01 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 024152 121 VVEIYGPEASGKTTLALHVIAEAQ 144 (271)
Q Consensus 121 li~I~G~~G~GKTtl~~~ia~~~~ 144 (271)
.++|+|+||+|||||++.+++...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 689999999999999999998654
No 353
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.55 E-value=0.0011 Score=57.70 Aligned_cols=40 Identities=20% Similarity=0.315 Sum_probs=27.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCC
Q 024152 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH 157 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~ 157 (271)
++-+++|.|++||||||++..++..+...+-.+.+++...
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~ 43 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDA 43 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecch
Confidence 4568999999999999999999886654444466676543
No 354
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.55 E-value=0.0017 Score=54.92 Aligned_cols=26 Identities=23% Similarity=0.225 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152 118 KGRVVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
++-+++|.|+|||||||++..++...
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 67799999999999999999998655
No 355
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.54 E-value=0.0014 Score=51.67 Aligned_cols=24 Identities=17% Similarity=0.238 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHH
Q 024152 120 RVVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 120 ~li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
.++.|.|+|||||||++..++..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998765
No 356
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.54 E-value=0.0013 Score=53.24 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 024152 121 VVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 121 li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
.++|+|+||+|||||++.+++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999999863
No 357
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.52 E-value=0.0017 Score=52.74 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 024152 118 KGRVVEIYGPEASGKTTLALHVIAE 142 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTtl~~~ia~~ 142 (271)
...+|+|.|+|||||||++..++..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999988864
No 358
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.52 E-value=0.0016 Score=52.70 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 024152 118 KGRVVEIYGPEASGKTTLALHVIAE 142 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTtl~~~ia~~ 142 (271)
+..+++|.|++||||||++..++..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 3468999999999999999998874
No 359
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.52 E-value=0.0022 Score=53.82 Aligned_cols=39 Identities=23% Similarity=0.371 Sum_probs=28.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhc----CCeEEEE
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQ----GGYCVFI 153 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~----~g~v~~~ 153 (271)
-..+|.+|.|.|++|+||||++..++..+... +-+|++.
T Consensus 21 ~m~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~ 63 (227)
T 3v9p_A 21 SMARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT 63 (227)
T ss_dssp --CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEE
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeee
Confidence 45689999999999999999999999888765 5566544
No 360
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.50 E-value=0.0017 Score=53.51 Aligned_cols=24 Identities=29% Similarity=0.289 Sum_probs=21.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHH
Q 024152 118 KGRVVEIYGPEASGKTTLALHVIA 141 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTtl~~~ia~ 141 (271)
.+-+++|.|++||||||++..++.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999876
No 361
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=96.48 E-value=0.0044 Score=58.63 Aligned_cols=52 Identities=21% Similarity=0.312 Sum_probs=42.6
Q ss_pred CCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEE
Q 024152 97 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI 153 (271)
Q Consensus 97 ~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~ 153 (271)
-+.+.||+..+|.++. +-+|+-++|.|++|+|||+|+.+|+.+.. .+-++|.
T Consensus 213 ~epl~TGirvID~l~P---igrGqr~~Ifgg~g~GKT~L~~~ia~~~~--~~v~V~~ 264 (600)
T 3vr4_A 213 DVPMITGQRVIDTFFP---VTKGGAAAVPGPFGAGKTVVQHQIAKWSD--VDLVVYV 264 (600)
T ss_dssp CSBCCCCCHHHHHHSC---CBTTCEEEEECCTTSCHHHHHHHHHHHSS--CSEEEEE
T ss_pred CceecccchhhhccCC---ccCCCEEeeecCCCccHHHHHHHHHhccC--CCEEEEE
Confidence 4678899999999985 66999999999999999999999877632 3334444
No 362
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.48 E-value=0.0013 Score=52.08 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 024152 118 KGRVVEIYGPEASGKTTLALHVIAE 142 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTtl~~~ia~~ 142 (271)
+|.-++|+|+||+|||||++.+++.
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 6778999999999999999998864
No 363
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.47 E-value=0.0037 Score=60.36 Aligned_cols=38 Identities=29% Similarity=0.415 Sum_probs=32.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcC
Q 024152 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 155 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~ 155 (271)
..++.+|.||||+|||+++..++..+...+.+|++.+.
T Consensus 204 ~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~ 241 (646)
T 4b3f_X 204 QKELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAP 241 (646)
T ss_dssp CSSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcC
Confidence 66799999999999999988888877777778777764
No 364
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=96.46 E-value=0.0017 Score=60.10 Aligned_cols=46 Identities=20% Similarity=0.294 Sum_probs=41.1
Q ss_pred CCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh
Q 024152 97 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR 145 (271)
Q Consensus 97 ~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~ 145 (271)
-+.+.||+..+|.++. +-+|+-++|.|++|+|||+|+.+|+.....
T Consensus 133 ~e~l~TGir~ID~l~p---igrGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~ 178 (469)
T 2c61_A 133 KDFIQTGISTIDGTNT---LVRGQKLPIFSASGLPHNEIALQIARQASV 178 (469)
T ss_dssp CSBCBCSCHHHHTTSC---CBTTCBCCEEECTTSCHHHHHHHHHHHCBC
T ss_pred ccccceeeEeeeeeec---cccCCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3678999999999985 669999999999999999999999987764
No 365
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.46 E-value=0.0029 Score=58.54 Aligned_cols=30 Identities=40% Similarity=0.537 Sum_probs=25.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHh
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQ 144 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~ 144 (271)
|..++.-++|.||||+|||+++..++..+.
T Consensus 59 ~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 59 KKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp TCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 444666789999999999999999998874
No 366
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.45 E-value=0.0037 Score=52.78 Aligned_cols=39 Identities=23% Similarity=0.221 Sum_probs=30.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCe-EEEE
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGY-CVFI 153 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~-v~~~ 153 (271)
.-.+|.+|.|.|++|+||||++..++..+...+-+ +.+.
T Consensus 23 ~~~~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~ 62 (236)
T 3lv8_A 23 NAMNAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRT 62 (236)
T ss_dssp ---CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeee
Confidence 34467899999999999999999999988776655 4444
No 367
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.45 E-value=0.001 Score=56.66 Aligned_cols=25 Identities=44% Similarity=0.563 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 024152 120 RVVEIYGPEASGKTTLALHVIAEAQ 144 (271)
Q Consensus 120 ~li~I~G~~G~GKTtl~~~ia~~~~ 144 (271)
.-+.|.||||+|||+|+..++....
T Consensus 45 ~~vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhC
Confidence 3388999999999999999998753
No 368
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=96.43 E-value=0.0019 Score=60.32 Aligned_cols=54 Identities=30% Similarity=0.569 Sum_probs=40.8
Q ss_pred CCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHH-HHHHHHhhcCCeEEEEc
Q 024152 97 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLAL-HVIAEAQRQGGYCVFID 154 (271)
Q Consensus 97 ~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~-~ia~~~~~~~g~v~~~~ 154 (271)
-+.+.||+..+|.++. +-+|+-.+|.|++|+|||+|++ +|+.. ...+..++|..
T Consensus 156 ~epl~TGiraID~l~P---igrGQR~~I~g~~g~GKT~Lal~~I~~~-~~~dv~~V~~~ 210 (515)
T 2r9v_A 156 DTPLQTGIKAIDSMIP---IGRGQRELIIGDRQTGKTAIAIDTIINQ-KGQGVYCIYVA 210 (515)
T ss_dssp CSEECCSCHHHHHHSC---EETTCBEEEEEETTSSHHHHHHHHHHTT-TTTTEEEEEEE
T ss_pred CcchhcCccccccccc---cccCCEEEEEcCCCCCccHHHHHHHHHh-hcCCcEEEEEE
Confidence 3578999999999985 6699999999999999999966 45444 32222345544
No 369
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.43 E-value=0.0032 Score=51.68 Aligned_cols=37 Identities=24% Similarity=0.158 Sum_probs=29.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCC
Q 024152 120 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH 157 (271)
Q Consensus 120 ~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~ 157 (271)
-.++|+|++|+|||||+..++...... .++..++.+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~~~-~~~~~i~~d~ 67 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIGNE-VKIGAMLGDV 67 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTTT-SCEEEEECSC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEecCC
Confidence 489999999999999999999886544 4566666543
No 370
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.43 E-value=0.0019 Score=53.04 Aligned_cols=22 Identities=18% Similarity=0.320 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 024152 121 VVEIYGPEASGKTTLALHVIAE 142 (271)
Q Consensus 121 li~I~G~~G~GKTtl~~~ia~~ 142 (271)
.++|.|+||+||||++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998764
No 371
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.42 E-value=0.0022 Score=50.29 Aligned_cols=23 Identities=22% Similarity=0.212 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 024152 121 VVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 121 li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
.+.|.|+|||||||++..++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998755
No 372
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.41 E-value=0.0013 Score=58.03 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=23.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 024152 116 LPKGRVVEIYGPEASGKTTLALHVIAE 142 (271)
Q Consensus 116 l~~G~li~I~G~~G~GKTtl~~~ia~~ 142 (271)
|.+| +++|+|+||+|||||+..|...
T Consensus 22 ~~~g-~~~i~G~NGsGKS~ll~ai~~l 47 (322)
T 1e69_A 22 FSDR-VTAIVGPNGSGKSNIIDAIKWV 47 (322)
T ss_dssp CCSS-EEEEECCTTTCSTHHHHHHHHT
T ss_pred cCCC-cEEEECCCCCcHHHHHHHHHHH
Confidence 5578 9999999999999999998854
No 373
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.41 E-value=0.0021 Score=54.57 Aligned_cols=39 Identities=21% Similarity=0.259 Sum_probs=30.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCC
Q 024152 119 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH 157 (271)
Q Consensus 119 G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~ 157 (271)
+.-+.|.|+||+|||+++..++......+.+.++++...
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~ 67 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGG
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCC
Confidence 456889999999999999999887665556777776543
No 374
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.40 E-value=0.0026 Score=56.98 Aligned_cols=29 Identities=24% Similarity=0.292 Sum_probs=24.7
Q ss_pred CCCCcE--EEEEcCCCCcHHHHHHHHHHHHh
Q 024152 116 LPKGRV--VEIYGPEASGKTTLALHVIAEAQ 144 (271)
Q Consensus 116 l~~G~l--i~I~G~~G~GKTtl~~~ia~~~~ 144 (271)
+++|+. ++|+|+||+||||++..++..+.
T Consensus 19 i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 19 IEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp TTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred hccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 346666 99999999999999999988654
No 375
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.40 E-value=0.0033 Score=54.23 Aligned_cols=35 Identities=23% Similarity=0.341 Sum_probs=27.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcC
Q 024152 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 155 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~ 155 (271)
++.-+.|.||||+|||+++..++... +.++++++.
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l---~~~~~~i~~ 83 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLA---NAPFIKVEA 83 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH---TCCEEEEEG
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh---CCCEEEEcc
Confidence 34567899999999999999999876 334566653
No 376
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.38 E-value=0.0027 Score=53.07 Aligned_cols=26 Identities=31% Similarity=0.406 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152 118 KGRVVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
++..++|.|+||+||||++..++...
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 55789999999999999999998765
No 377
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.35 E-value=0.0025 Score=51.76 Aligned_cols=23 Identities=48% Similarity=0.664 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 024152 121 VVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 121 li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
+++|.|++||||||++..++...
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999998865
No 378
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=96.33 E-value=0.0019 Score=59.60 Aligned_cols=46 Identities=17% Similarity=0.282 Sum_probs=40.6
Q ss_pred CCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhh
Q 024152 97 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQR 145 (271)
Q Consensus 97 ~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~ 145 (271)
-+.+.||+..+|.++. +-+|+-++|.|++|+|||+|+.+|+.....
T Consensus 128 ~e~l~TGiraID~l~p---igrGQr~~Ifgg~G~GKt~L~~~Ia~~~~a 173 (464)
T 3gqb_B 128 EQFIQTGISTIDVMNT---LVRGQKLPIFSGSGLPANEIAAQIARQATV 173 (464)
T ss_dssp CCBCBCSCHHHHTTSC---CBTTCBCCEEEETTSCHHHHHHHHHHHCBC
T ss_pred cccccCcceeeecccc---cccCCEEEEecCCCCCchHHHHHHHHHHHh
Confidence 4678999999999985 669999999999999999999998877653
No 379
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.33 E-value=0.0043 Score=57.36 Aligned_cols=21 Identities=33% Similarity=0.450 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 024152 121 VVEIYGPEASGKTTLALHVIA 141 (271)
Q Consensus 121 li~I~G~~G~GKTtl~~~ia~ 141 (271)
.++|+|+||+|||||++.+++
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~ 45 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAG 45 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEE
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 799999999999999999865
No 380
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.33 E-value=0.0049 Score=51.18 Aligned_cols=36 Identities=31% Similarity=0.369 Sum_probs=29.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCC-eEEEE
Q 024152 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGG-YCVFI 153 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g-~v~~~ 153 (271)
+|.+|.|.|++|+||||.+..++..+...+- .|++.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~ 38 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFT 38 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceee
Confidence 5789999999999999999999988876654 55443
No 381
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.33 E-value=0.028 Score=53.39 Aligned_cols=40 Identities=18% Similarity=0.156 Sum_probs=29.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHhhc----CCeEEEEcCCC
Q 024152 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQ----GGYCVFIDAEH 157 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~----~g~v~~~~~e~ 157 (271)
.+--++|+|.+|+|||++++.++..+... .-.+++++...
T Consensus 213 k~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg 256 (574)
T 2iut_A 213 KMPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKM 256 (574)
T ss_dssp GSCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSS
T ss_pred hCCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCCh
Confidence 34568999999999999999988876642 23556666543
No 382
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.31 E-value=0.0026 Score=52.89 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 024152 121 VVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 121 li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
+++|.|+|||||||++..++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998765
No 383
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.30 E-value=0.023 Score=55.73 Aligned_cols=28 Identities=18% Similarity=0.163 Sum_probs=24.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHhh
Q 024152 118 KGRVVEIYGPEASGKTTLALHVIAEAQR 145 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~ 145 (271)
.+.-++|+|+||+|||+++..++..+..
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l~~ 233 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQ 233 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHh
Confidence 5677899999999999999999987753
No 384
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=96.29 E-value=0.004 Score=52.86 Aligned_cols=36 Identities=22% Similarity=0.379 Sum_probs=32.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCC
Q 024152 121 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 156 (271)
Q Consensus 121 li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e 156 (271)
++.|.|..|+||||++.+++..++..+.+|++++..
T Consensus 3 vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD~D 38 (269)
T 1cp2_A 3 QVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCD 38 (269)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred EEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCC
Confidence 567789999999999999999999888899998865
No 385
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=96.28 E-value=0.0035 Score=59.12 Aligned_cols=54 Identities=24% Similarity=0.314 Sum_probs=43.2
Q ss_pred CCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcC
Q 024152 97 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 155 (271)
Q Consensus 97 ~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~ 155 (271)
-+.+.||+..+|.++. +-+|+-.+|.|++|+|||+|+.+|+... ..+-++|...
T Consensus 208 ~epl~TGirvID~l~P---igkGqr~~I~g~~g~GKT~L~~~ia~~~--~~~~~V~~~i 261 (588)
T 3mfy_A 208 EVPLITGQRVIDTFFP---QAKGGTAAIPGPAGSGKTVTQHQLAKWS--DAQVVIYIGC 261 (588)
T ss_dssp CSEECCSCHHHHHHSC---EETTCEEEECSCCSHHHHHHHHHHHHHS--SCSEEEEEEC
T ss_pred CcccccCcchhhccCC---cccCCeEEeecCCCCCHHHHHHHHHhcc--CCCEEEEEEe
Confidence 4678899999999985 6699999999999999999999887652 2334555543
No 386
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.26 E-value=0.039 Score=51.02 Aligned_cols=36 Identities=17% Similarity=0.055 Sum_probs=27.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEE
Q 024152 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI 153 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~ 153 (271)
...+++++|.||+||||++..++.......-....+
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~ 73 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREF 73 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEE
Confidence 345899999999999999999998776444333333
No 387
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.23 E-value=0.0027 Score=51.67 Aligned_cols=24 Identities=42% Similarity=0.616 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHH
Q 024152 120 RVVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 120 ~li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
..++|+||+|+|||||+..+....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 358999999999999999887653
No 388
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=96.22 E-value=0.005 Score=54.21 Aligned_cols=42 Identities=21% Similarity=0.330 Sum_probs=36.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCC
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 156 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e 156 (271)
.+..-.+|+|+|.-|+||||++-+++..++..+.+|+.++..
T Consensus 44 ~i~~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID~D 85 (314)
T 3fwy_A 44 KITGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCD 85 (314)
T ss_dssp ---CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEES
T ss_pred CCCCceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 456778999999999999999999999999999999999865
No 389
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=96.20 E-value=0.0016 Score=56.98 Aligned_cols=27 Identities=19% Similarity=0.192 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHH-HhhcCC
Q 024152 122 VEIYGPEASGKTTLALHVIAE-AQRQGG 148 (271)
Q Consensus 122 i~I~G~~G~GKTtl~~~ia~~-~~~~~g 148 (271)
++|+|+||+|||||++.+++. ..+..+
T Consensus 21 I~lvG~nG~GKSTLl~~L~g~~~~~~~g 48 (301)
T 2qnr_A 21 LMVVGESGLGKSTLINSLFLTDLYPERV 48 (301)
T ss_dssp EEEEEETTSSHHHHHHHHHC--------
T ss_pred EEEECCCCCCHHHHHHHHhCCCccCCCC
Confidence 499999999999999998875 665555
No 390
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=96.19 E-value=0.0057 Score=52.58 Aligned_cols=36 Identities=19% Similarity=0.254 Sum_probs=28.6
Q ss_pred HHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152 107 LDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 107 LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
|...+. |..++-..++|.||||+|||.|+..++...
T Consensus 93 l~~~l~-~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 93 FLGWAT-KKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHT-TCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHh-CCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 555566 334667789999999999999999998753
No 391
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.19 E-value=0.0032 Score=51.74 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 024152 121 VVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 121 li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
.++|.|+|||||||++..++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998755
No 392
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=96.18 E-value=0.0044 Score=58.38 Aligned_cols=53 Identities=23% Similarity=0.286 Sum_probs=42.8
Q ss_pred CCCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEE
Q 024152 96 HVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI 153 (271)
Q Consensus 96 ~~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~ 153 (271)
.-+.+.||+..+|.++. +-+|+-++|.|++|+|||+|+.+|+.+.. .+-++|.
T Consensus 201 ~~epl~TGirvID~l~P---igrGqr~~Ifg~~g~GKT~l~~~ia~~~~--~~v~V~~ 253 (578)
T 3gqb_A 201 PNTPFLTGMRILDVLFP---VAMGGTAAIPGPFGSGKSVTQQSLAKWSN--ADVVVYV 253 (578)
T ss_dssp SCSEECCSCHHHHTTSC---EETTCEEEECCCTTSCHHHHHHHHHHHSS--CSEEEEE
T ss_pred CCCcccccchhhhhccc---ccCCCEEeeeCCCCccHHHHHHHHHhccC--CCEEEEE
Confidence 34678899999999975 66999999999999999999999877632 3334444
No 393
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=96.18 E-value=0.014 Score=51.99 Aligned_cols=61 Identities=18% Similarity=0.160 Sum_probs=45.8
Q ss_pred HHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCCCHHHHHHcCCc
Q 024152 106 ALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVK 170 (271)
Q Consensus 106 ~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~~~~~~~~~g~~ 170 (271)
.+..+.. +-+.-.++.+.|..|+||||++.++|..++..+.+|++++.... ..+...++..
T Consensus 15 ~~~~~~~--~~~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~--~~l~~~l~~~ 75 (349)
T 3ug7_A 15 ITEKKLE--KKDGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDPA--HSLRDIFEQE 75 (349)
T ss_dssp HHHHHHH--SSCSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCTT--CHHHHHHCSC
T ss_pred hHHHhhc--ccCCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCC--CCHHHHhCCC
Confidence 3344444 44566688888999999999999999999998889999998752 3445555554
No 394
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.17 E-value=0.0043 Score=51.92 Aligned_cols=36 Identities=25% Similarity=0.243 Sum_probs=30.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHHhh-cCCeEEE
Q 024152 117 PKGRVVEIYGPEASGKTTLALHVIAEAQR-QGGYCVF 152 (271)
Q Consensus 117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~~-~~g~v~~ 152 (271)
.+|.+|.|.|.+|+||||++..++..+.. .+-+|++
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~ 55 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVV 55 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeE
Confidence 37899999999999999999999998876 5556555
No 395
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.17 E-value=0.0033 Score=58.18 Aligned_cols=36 Identities=28% Similarity=0.394 Sum_probs=30.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCC-eEEEEcCC
Q 024152 121 VVEIYGPEASGKTTLALHVIAEAQRQGG-YCVFIDAE 156 (271)
Q Consensus 121 li~I~G~~G~GKTtl~~~ia~~~~~~~g-~v~~~~~e 156 (271)
.++|.|+||+|||+++..++..+...+. .|+++...
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T 83 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGETGIILAAPT 83 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCc
Confidence 9999999999999999999988877665 56666543
No 396
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.16 E-value=0.0034 Score=51.28 Aligned_cols=26 Identities=19% Similarity=0.248 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152 118 KGRVVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
-.-+++|.|.+||||||++..++...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45689999999999999999988753
No 397
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=96.15 E-value=0.0036 Score=52.16 Aligned_cols=36 Identities=22% Similarity=0.240 Sum_probs=32.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCC
Q 024152 122 VEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH 157 (271)
Q Consensus 122 i~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~ 157 (271)
|.|.|..|+||||++.+++..++..+.+|++++...
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 38 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDP 38 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECT
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 566999999999999999999998888999998654
No 398
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.14 E-value=0.0029 Score=49.51 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 024152 121 VVEIYGPEASGKTTLALHVIAE 142 (271)
Q Consensus 121 li~I~G~~G~GKTtl~~~ia~~ 142 (271)
.++|+|+||+|||||++.+++.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999864
No 399
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=96.11 E-value=0.0019 Score=60.24 Aligned_cols=55 Identities=29% Similarity=0.454 Sum_probs=41.3
Q ss_pred CCccccCcHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEc
Q 024152 97 VPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID 154 (271)
Q Consensus 97 ~~~i~Tg~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~ 154 (271)
-+.+.||+..+|.++. +-+|+-.+|.|++|+|||+|++....+.+..+..++|..
T Consensus 144 ~epl~TGiraID~l~P---igrGQR~~Ifg~~g~GKT~Lal~~I~~~~~~dv~~V~~~ 198 (507)
T 1fx0_A 144 YEPLQTGLIAIDAMIP---VGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVA 198 (507)
T ss_dssp CSBCCCSCTTTTTTSC---CBTTCBCBEEESSSSSHHHHHHHHHHTCCTTTCEEEEEE
T ss_pred CCcccccceecccccc---cccCCEEEEecCCCCCccHHHHHHHHHhhcCCcEEEEEE
Confidence 3678999999999986 669999999999999999997644333333333445554
No 400
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=96.11 E-value=0.0058 Score=52.62 Aligned_cols=36 Identities=22% Similarity=0.414 Sum_probs=32.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCC
Q 024152 121 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 156 (271)
Q Consensus 121 li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e 156 (271)
++.|.|..|+||||++.++|..++..+.+|++++..
T Consensus 4 vIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD~D 39 (289)
T 2afh_E 4 QCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCD 39 (289)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred EEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 677789999999999999999999888799999865
No 401
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=96.10 E-value=0.0086 Score=51.46 Aligned_cols=40 Identities=18% Similarity=0.273 Sum_probs=34.3
Q ss_pred CCcEEEEEcC-CCCcHHHHHHHHHHHHhhcCCeEEEEcCCC
Q 024152 118 KGRVVEIYGP-EASGKTTLALHVIAEAQRQGGYCVFIDAEH 157 (271)
Q Consensus 118 ~G~li~I~G~-~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~ 157 (271)
+..++.|.+. +|.||||++.++|..++..+.+|++++...
T Consensus 81 ~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~ 121 (271)
T 3bfv_A 81 AVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDM 121 (271)
T ss_dssp CCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 4568888765 899999999999999998888999998764
No 402
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=96.10 E-value=0.0082 Score=52.34 Aligned_cols=40 Identities=28% Similarity=0.382 Sum_probs=34.7
Q ss_pred CCcEEEEEcC-CCCcHHHHHHHHHHHHhhcCCeEEEEcCCC
Q 024152 118 KGRVVEIYGP-EASGKTTLALHVIAEAQRQGGYCVFIDAEH 157 (271)
Q Consensus 118 ~G~li~I~G~-~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~ 157 (271)
++.++.|.+. +|+||||++.++|..++..+.+|++++...
T Consensus 103 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~ 143 (299)
T 3cio_A 103 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADL 143 (299)
T ss_dssp SCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 4578888875 899999999999999998888999998764
No 403
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.09 E-value=0.0031 Score=54.56 Aligned_cols=22 Identities=36% Similarity=0.466 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 024152 120 RVVEIYGPEASGKTTLALHVIA 141 (271)
Q Consensus 120 ~li~I~G~~G~GKTtl~~~ia~ 141 (271)
.+++|.|+||+||||++..++.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999886
No 404
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.09 E-value=0.0047 Score=55.09 Aligned_cols=26 Identities=31% Similarity=0.326 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152 118 KGRVVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
++.-++|.||||+|||+++..++...
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 55678999999999999999998876
No 405
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.09 E-value=0.003 Score=52.01 Aligned_cols=26 Identities=31% Similarity=0.381 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152 118 KGRVVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
.|..++|.|++|+|||||+..++...
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 46789999999999999999887643
No 406
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.01 E-value=0.0033 Score=57.54 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 024152 118 KGRVVEIYGPEASGKTTLALHVIAE 142 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTtl~~~ia~~ 142 (271)
...+++|+|+|||||||++..++..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 5689999999999999999987753
No 407
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.01 E-value=0.0046 Score=50.77 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 024152 120 RVVEIYGPEASGKTTLALHVIAEAQ 144 (271)
Q Consensus 120 ~li~I~G~~G~GKTtl~~~ia~~~~ 144 (271)
.+++|+|+||+||||++..|...+.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4999999999999999998865443
No 408
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=95.99 E-value=0.0055 Score=50.33 Aligned_cols=25 Identities=28% Similarity=0.389 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152 119 GRVVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 119 G~li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
..++++.|+||+|||+++..++...
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3489999999999999998765544
No 409
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=95.98 E-value=0.011 Score=53.21 Aligned_cols=40 Identities=20% Similarity=0.234 Sum_probs=34.8
Q ss_pred CCCcEEEEEc-CCCCcHHHHHHHHHHHHhhcCCeEEEEcCC
Q 024152 117 PKGRVVEIYG-PEASGKTTLALHVIAEAQRQGGYCVFIDAE 156 (271)
Q Consensus 117 ~~G~li~I~G-~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e 156 (271)
.++.++.|++ ..|+||||++.++|..++..+.+|++++.+
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D 181 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIE 181 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 3667888875 999999999999999999888899999966
No 410
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.98 E-value=0.0037 Score=55.64 Aligned_cols=25 Identities=40% Similarity=0.583 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 024152 120 RVVEIYGPEASGKTTLALHVIAEAQ 144 (271)
Q Consensus 120 ~li~I~G~~G~GKTtl~~~ia~~~~ 144 (271)
.+++|+||+|+|||||+..++....
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4899999999999999999987653
No 411
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.97 E-value=0.0058 Score=54.75 Aligned_cols=35 Identities=23% Similarity=0.221 Sum_probs=27.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEc
Q 024152 117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID 154 (271)
Q Consensus 117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~ 154 (271)
.+..-+.|.||||+|||+++..++... +.+++.++
T Consensus 70 ~~~~~ill~Gp~GtGKT~la~~la~~l---~~~~~~~~ 104 (376)
T 1um8_A 70 LSKSNILLIGPTGSGKTLMAQTLAKHL---DIPIAISD 104 (376)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHT---TCCEEEEE
T ss_pred cCCCCEEEECCCCCCHHHHHHHHHHHh---CCCEEEec
Confidence 355678999999999999999998766 33455554
No 412
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.96 E-value=0.0041 Score=53.73 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHH
Q 024152 119 GRVVEIYGPEASGKTTLALHVIA 141 (271)
Q Consensus 119 G~li~I~G~~G~GKTtl~~~ia~ 141 (271)
.-+|+|.|++||||||++..++.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999983
No 413
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.95 E-value=0.0073 Score=49.62 Aligned_cols=34 Identities=24% Similarity=0.240 Sum_probs=26.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEc
Q 024152 120 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID 154 (271)
Q Consensus 120 ~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~ 154 (271)
-.++|+|.+|+|||||+..++...... ..+..++
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~~~~-~~~~~i~ 72 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNLKDK-YKIACIA 72 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTTT-CCEEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEE
Confidence 478899999999999999999886554 3344444
No 414
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=95.92 E-value=0.0028 Score=55.40 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 024152 118 KGRVVEIYGPEASGKTTLALHVIAE 142 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTtl~~~ia~~ 142 (271)
++..++|+|+||+|||||++.+++.
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3448999999999999999999875
No 415
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.91 E-value=0.0037 Score=49.62 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 024152 121 VVEIYGPEASGKTTLALHVIAE 142 (271)
Q Consensus 121 li~I~G~~G~GKTtl~~~ia~~ 142 (271)
.++|+|++|+|||||++.+++.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999874
No 416
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=95.89 E-value=0.0093 Score=52.53 Aligned_cols=38 Identities=26% Similarity=0.265 Sum_probs=34.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCC
Q 024152 120 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH 157 (271)
Q Consensus 120 ~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~ 157 (271)
.++...|..|+||||++.++|..++..+.+|++++...
T Consensus 15 ~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 52 (324)
T 3zq6_A 15 TFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDP 52 (324)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 68889999999999999999999998888999998765
No 417
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.88 E-value=0.0036 Score=49.93 Aligned_cols=22 Identities=36% Similarity=0.460 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 024152 121 VVEIYGPEASGKTTLALHVIAE 142 (271)
Q Consensus 121 li~I~G~~G~GKTtl~~~ia~~ 142 (271)
-++|+|+||+|||||++.+++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999874
No 418
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.88 E-value=0.0049 Score=54.83 Aligned_cols=27 Identities=22% Similarity=0.473 Sum_probs=23.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152 117 PKGRVVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 117 ~~G~li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
.++.+++|+||+|+|||||+..+|..+
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHC
Confidence 356799999999999999999988643
No 419
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.82 E-value=0.0055 Score=54.19 Aligned_cols=24 Identities=33% Similarity=0.540 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHH
Q 024152 120 RVVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 120 ~li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
.+++|+||+|+|||||+..++...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 489999999999999999998754
No 420
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=95.80 E-value=0.0024 Score=58.50 Aligned_cols=28 Identities=21% Similarity=0.154 Sum_probs=25.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 024152 115 GLPKGRVVEIYGPEASGKTTLALHVIAE 142 (271)
Q Consensus 115 Gl~~G~li~I~G~~G~GKTtl~~~ia~~ 142 (271)
-++.|..++|+|+||+|||||++.+++.
T Consensus 153 elk~g~~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 153 ELMLIADVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp EECCSCSEEEECCGGGCHHHHHHHHCSS
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHHcC
Confidence 4668999999999999999999999876
No 421
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=95.80 E-value=0.0088 Score=51.61 Aligned_cols=40 Identities=18% Similarity=0.210 Sum_probs=34.0
Q ss_pred CCcEEEEEc---CCCCcHHHHHHHHHHHHhhcCCeEEEEcCCC
Q 024152 118 KGRVVEIYG---PEASGKTTLALHVIAEAQRQGGYCVFIDAEH 157 (271)
Q Consensus 118 ~G~li~I~G---~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~ 157 (271)
.+.++.|++ ..|+||||++.++|..++..+.+|++++...
T Consensus 33 ~~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~ 75 (298)
T 2oze_A 33 KNEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDL 75 (298)
T ss_dssp HCSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECT
T ss_pred CCcEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 456777776 9999999999999999998888999998654
No 422
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=95.79 E-value=0.009 Score=50.51 Aligned_cols=40 Identities=28% Similarity=0.346 Sum_probs=34.2
Q ss_pred CCcEEEEE-cCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCC
Q 024152 118 KGRVVEIY-GPEASGKTTLALHVIAEAQRQGGYCVFIDAEH 157 (271)
Q Consensus 118 ~G~li~I~-G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~ 157 (271)
++.++.|+ +..|+||||++.++|..++..+.+|++++...
T Consensus 5 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 45 (257)
T 1wcv_1 5 KVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDP 45 (257)
T ss_dssp CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECCC
Confidence 45677776 68899999999999999998888999998764
No 423
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.78 E-value=0.0056 Score=47.30 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 024152 121 VVEIYGPEASGKTTLALHVIAE 142 (271)
Q Consensus 121 li~I~G~~G~GKTtl~~~ia~~ 142 (271)
-++|+|++|+|||||+..+...
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
No 424
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.74 E-value=0.0059 Score=46.95 Aligned_cols=23 Identities=22% Similarity=0.460 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 024152 121 VVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 121 li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
-++|+|++|+|||||+..+....
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999988653
No 425
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.73 E-value=0.0059 Score=46.84 Aligned_cols=22 Identities=23% Similarity=0.498 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 024152 121 VVEIYGPEASGKTTLALHVIAE 142 (271)
Q Consensus 121 li~I~G~~G~GKTtl~~~ia~~ 142 (271)
-++++|++|+|||||++.++..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999999865
No 426
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.71 E-value=0.0068 Score=50.78 Aligned_cols=26 Identities=27% Similarity=0.234 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152 118 KGRVVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
+|.+|.|.|.+|+||||++..++..+
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 36789999999999999999998765
No 427
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=95.70 E-value=0.015 Score=50.40 Aligned_cols=41 Identities=17% Similarity=0.272 Sum_probs=33.7
Q ss_pred CCcEEEEEc-CCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC
Q 024152 118 KGRVVEIYG-PEASGKTTLALHVIAEAQRQGGYCVFIDAEHA 158 (271)
Q Consensus 118 ~G~li~I~G-~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~ 158 (271)
++.++.|.+ .+|.||||++.++|..++..+.+|++++....
T Consensus 91 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~~ 132 (286)
T 3la6_A 91 QNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMR 132 (286)
T ss_dssp TCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCTT
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccCC
Confidence 445666665 68999999999999999988889999987643
No 428
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=95.69 E-value=0.0085 Score=49.85 Aligned_cols=29 Identities=28% Similarity=0.377 Sum_probs=26.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHHhh
Q 024152 117 PKGRVVEIYGPEASGKTTLALHVIAEAQR 145 (271)
Q Consensus 117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~~ 145 (271)
.+|.+|.|.|++|+||||.+..++..+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 37899999999999999999999987764
No 429
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.69 E-value=0.012 Score=56.66 Aligned_cols=38 Identities=26% Similarity=0.322 Sum_probs=30.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEc
Q 024152 117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID 154 (271)
Q Consensus 117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~ 154 (271)
++|.+|.|.|.|||||||++..++..+...+-.+++++
T Consensus 50 ~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lD 87 (630)
T 1x6v_B 50 FRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD 87 (630)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEES
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 37889999999999999999999987765554555554
No 430
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.67 E-value=0.0066 Score=46.61 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 024152 121 VVEIYGPEASGKTTLALHVIAE 142 (271)
Q Consensus 121 li~I~G~~G~GKTtl~~~ia~~ 142 (271)
-++|+|++|+|||||+..+++.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999998864
No 431
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=95.67 E-value=0.012 Score=48.47 Aligned_cols=34 Identities=26% Similarity=0.341 Sum_probs=27.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEE
Q 024152 119 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFI 153 (271)
Q Consensus 119 G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~ 153 (271)
|.+|.|-|..||||||.+..++..+.. +.+|++.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~~-~~~v~~~ 35 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 35 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHC-CCCEEEe
Confidence 568999999999999999999988753 4455554
No 432
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=95.66 E-value=0.015 Score=49.14 Aligned_cols=37 Identities=22% Similarity=0.307 Sum_probs=31.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCC
Q 024152 121 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH 157 (271)
Q Consensus 121 li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~ 157 (271)
+.+..+..|+||||++.+++..++..+.+|++++...
T Consensus 5 I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (263)
T 1hyq_A 5 ITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADI 41 (263)
T ss_dssp EEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 3344678999999999999999998888999998764
No 433
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.65 E-value=0.0068 Score=46.63 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 024152 121 VVEIYGPEASGKTTLALHVIAE 142 (271)
Q Consensus 121 li~I~G~~G~GKTtl~~~ia~~ 142 (271)
-++|+|++|+|||||+..+...
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998864
No 434
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=95.64 E-value=0.011 Score=53.95 Aligned_cols=38 Identities=21% Similarity=0.328 Sum_probs=32.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCC
Q 024152 119 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 156 (271)
Q Consensus 119 G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e 156 (271)
..-+.|+|++|+|||+++..++.++...++.++++|..
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dpk 90 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPN 90 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEET
T ss_pred cceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 45789999999999999988888888777888888754
No 435
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=95.63 E-value=0.015 Score=55.50 Aligned_cols=40 Identities=15% Similarity=0.212 Sum_probs=36.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCC
Q 024152 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH 157 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~ 157 (271)
+..++.+.|.+|+||||++.+++..++..+.+|++++...
T Consensus 7 ~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D~ 46 (589)
T 1ihu_A 7 IPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDP 46 (589)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 5679999999999999999999999998888999999775
No 436
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=95.63 E-value=0.0074 Score=53.48 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHH
Q 024152 120 RVVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 120 ~li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
.+++|+||||+||||++..|+..+
T Consensus 24 ~~~~i~G~NGsGKS~lleAi~~~l 47 (339)
T 3qkt_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (339)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 499999999999999999876543
No 437
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.61 E-value=0.0073 Score=53.19 Aligned_cols=25 Identities=32% Similarity=0.507 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152 119 GRVVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 119 G~li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
+.+++|+||+|+|||||+..++...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4589999999999999999988654
No 438
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=95.60 E-value=0.037 Score=56.25 Aligned_cols=55 Identities=27% Similarity=0.217 Sum_probs=37.1
Q ss_pred cHHHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHH--Hh-hcCCeEEEEcCCCCCC
Q 024152 104 SFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAE--AQ-RQGGYCVFIDAEHALD 160 (271)
Q Consensus 104 ~~~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~--~~-~~~g~v~~~~~e~~~~ 160 (271)
+..|...+. ......++.|.|+.|+|||||+..++.. +. .....++|++......
T Consensus 137 LeeL~elL~--~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d 194 (1221)
T 1vt4_I 137 YLKLRQALL--ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194 (1221)
T ss_dssp HHHHHHHHH--HCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSS
T ss_pred HHHHHHHHh--ccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCC
Confidence 344555554 3344689999999999999999998853 22 2344578887654433
No 439
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=95.58 E-value=0.014 Score=48.30 Aligned_cols=38 Identities=24% Similarity=0.429 Sum_probs=31.4
Q ss_pred cEEEE-EcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCC
Q 024152 120 RVVEI-YGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH 157 (271)
Q Consensus 120 ~li~I-~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~ 157 (271)
.++.| .+..|+||||++.+++..++..+.+|++++...
T Consensus 3 ~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (237)
T 1g3q_A 3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDL 41 (237)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCC
Confidence 34555 567899999999999999998888999998754
No 440
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.58 E-value=0.0075 Score=46.58 Aligned_cols=23 Identities=22% Similarity=0.489 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 024152 121 VVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 121 li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
-++|+|++|+|||||+..+....
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999988654
No 441
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.57 E-value=0.0072 Score=48.17 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 024152 118 KGRVVEIYGPEASGKTTLALHVIAE 142 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTtl~~~ia~~ 142 (271)
+.--++|+|++|+|||||+..+++.
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3447999999999999999998864
No 442
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.57 E-value=0.0045 Score=56.74 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHh
Q 024152 122 VEIYGPEASGKTTLALHVIAEAQ 144 (271)
Q Consensus 122 i~I~G~~G~GKTtl~~~ia~~~~ 144 (271)
++|+|+||+|||||++.+++...
T Consensus 34 I~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTCCC
T ss_pred EEEECCCCCcHHHHHHHHhCCCC
Confidence 59999999999999999998654
No 443
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.57 E-value=0.0073 Score=46.73 Aligned_cols=21 Identities=19% Similarity=0.476 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 024152 122 VEIYGPEASGKTTLALHVIAE 142 (271)
Q Consensus 122 i~I~G~~G~GKTtl~~~ia~~ 142 (271)
++|+|++|+|||||+..+.+.
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHhC
Confidence 789999999999999998854
No 444
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.55 E-value=0.0076 Score=46.60 Aligned_cols=23 Identities=17% Similarity=0.416 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 024152 121 VVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 121 li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
-++|+|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998754
No 445
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.55 E-value=0.0076 Score=47.09 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 024152 121 VVEIYGPEASGKTTLALHVIAE 142 (271)
Q Consensus 121 li~I~G~~G~GKTtl~~~ia~~ 142 (271)
-++|+|++|+|||||+..+...
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
No 446
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=95.54 E-value=0.013 Score=51.29 Aligned_cols=34 Identities=18% Similarity=0.286 Sum_probs=27.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCC
Q 024152 120 RVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 156 (271)
Q Consensus 120 ~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e 156 (271)
.++.|.|++|+|||+|+..++.... ..++|++..
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~---~~~~~~~~~ 64 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELN---LPYIYLDLR 64 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHT---CCEEEEEGG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcC---CCEEEEEch
Confidence 5999999999999999999987753 236777654
No 447
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.54 E-value=0.0079 Score=46.39 Aligned_cols=22 Identities=18% Similarity=0.436 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 024152 121 VVEIYGPEASGKTTLALHVIAE 142 (271)
Q Consensus 121 li~I~G~~G~GKTtl~~~ia~~ 142 (271)
-++|+|++|+|||||++.+...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999874
No 448
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.54 E-value=0.0078 Score=46.64 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 024152 121 VVEIYGPEASGKTTLALHVIAE 142 (271)
Q Consensus 121 li~I~G~~G~GKTtl~~~ia~~ 142 (271)
-++|+|++|+|||||+..++..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999998865
No 449
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=95.54 E-value=0.012 Score=49.97 Aligned_cols=39 Identities=21% Similarity=0.284 Sum_probs=32.8
Q ss_pred CCcEEEE-EcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCC
Q 024152 118 KGRVVEI-YGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH 157 (271)
Q Consensus 118 ~G~li~I-~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~ 157 (271)
++.++.| .+..|+||||++.+++..++ .+.+|++++...
T Consensus 26 ~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~ 65 (267)
T 3k9g_A 26 KPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDT 65 (267)
T ss_dssp CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECT
T ss_pred CCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCC
Confidence 4566666 67889999999999999999 778999998664
No 450
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.53 E-value=0.0092 Score=52.43 Aligned_cols=26 Identities=35% Similarity=0.478 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152 118 KGRVVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
...+++|+||+|+|||||+..++...
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 35689999999999999999998754
No 451
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.51 E-value=0.0066 Score=47.00 Aligned_cols=22 Identities=27% Similarity=0.587 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 024152 121 VVEIYGPEASGKTTLALHVIAE 142 (271)
Q Consensus 121 li~I~G~~G~GKTtl~~~ia~~ 142 (271)
-++|+|++|+|||||++.++..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999998863
No 452
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.50 E-value=0.0076 Score=46.95 Aligned_cols=22 Identities=32% Similarity=0.371 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 024152 121 VVEIYGPEASGKTTLALHVIAE 142 (271)
Q Consensus 121 li~I~G~~G~GKTtl~~~ia~~ 142 (271)
-++|+|++|+|||||++.+.+.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 4789999999999999998764
No 453
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.49 E-value=0.009 Score=46.05 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 024152 122 VEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 122 i~I~G~~G~GKTtl~~~ia~~~ 143 (271)
++|+|++|+|||||+..+....
T Consensus 3 i~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7899999999999999998653
No 454
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.48 E-value=0.006 Score=52.15 Aligned_cols=23 Identities=26% Similarity=0.274 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 024152 121 VVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 121 li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
-++|+|+||+|||||++.+++..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998753
No 455
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=95.48 E-value=0.014 Score=55.60 Aligned_cols=38 Identities=21% Similarity=0.249 Sum_probs=31.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHHhhcC-CeEEEEc
Q 024152 117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQG-GYCVFID 154 (271)
Q Consensus 117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~~~~-g~v~~~~ 154 (271)
+.|.++.|.|.|||||||++..++..+...+ ..+++++
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD 432 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLL 432 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEEC
Confidence 4578999999999999999999998877555 4556665
No 456
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=95.48 E-value=0.091 Score=51.79 Aligned_cols=38 Identities=16% Similarity=0.177 Sum_probs=27.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHHhhc---CCeEEEEc
Q 024152 117 PKGRVVEIYGPEASGKTTLALHVIAEAQRQ---GGYCVFID 154 (271)
Q Consensus 117 ~~G~li~I~G~~G~GKTtl~~~ia~~~~~~---~g~v~~~~ 154 (271)
..|+.++|.||+|+||||++-.++...... +..++++.
T Consensus 107 ~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~ 147 (773)
T 2xau_A 107 QNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQ 147 (773)
T ss_dssp HHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEE
T ss_pred hCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecC
Confidence 378999999999999999777776554432 33466654
No 457
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.47 E-value=0.0084 Score=46.92 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 024152 121 VVEIYGPEASGKTTLALHVIAE 142 (271)
Q Consensus 121 li~I~G~~G~GKTtl~~~ia~~ 142 (271)
-++|+|++|+|||||+..+...
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998874
No 458
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=95.46 E-value=0.014 Score=55.21 Aligned_cols=38 Identities=26% Similarity=0.351 Sum_probs=31.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcC
Q 024152 118 KGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDA 155 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~ 155 (271)
.+.++.|.|.+|+||||++..++..+...+..+.+++.
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~ 408 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDG 408 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECH
T ss_pred cceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECc
Confidence 37899999999999999999999877766666777764
No 459
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=95.46 E-value=0.018 Score=47.91 Aligned_cols=40 Identities=13% Similarity=0.127 Sum_probs=33.2
Q ss_pred CCcEEEEE-cCCCCcHHHHHHHHHHHHhhc-CCeEEEEcCCC
Q 024152 118 KGRVVEIY-GPEASGKTTLALHVIAEAQRQ-GGYCVFIDAEH 157 (271)
Q Consensus 118 ~G~li~I~-G~~G~GKTtl~~~ia~~~~~~-~g~v~~~~~e~ 157 (271)
.+.++.|+ +..|+||||++.+++..++.. +.+|++++...
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 44 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISL 44 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCT
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCC
Confidence 45566666 568999999999999999988 88999998753
No 460
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.45 E-value=0.0088 Score=46.16 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 024152 121 VVEIYGPEASGKTTLALHVIAE 142 (271)
Q Consensus 121 li~I~G~~G~GKTtl~~~ia~~ 142 (271)
-++|+|++|+|||||+..++..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999998864
No 461
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=95.44 E-value=0.017 Score=49.01 Aligned_cols=41 Identities=22% Similarity=0.272 Sum_probs=33.3
Q ss_pred CcEEEE-EcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCCC
Q 024152 119 GRVVEI-YGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHAL 159 (271)
Q Consensus 119 G~li~I-~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~~ 159 (271)
+.++.| .+..|+||||++.+++..++..+.+|++++.....
T Consensus 18 ~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~~~ 59 (262)
T 2ph1_A 18 KSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFLG 59 (262)
T ss_dssp SCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred CeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 445555 57789999999999999999888899999876443
No 462
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.44 E-value=0.009 Score=48.98 Aligned_cols=25 Identities=36% Similarity=0.538 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152 119 GRVVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 119 G~li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
+.++.|.|++|+||||++..++...
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4589999999999999999887654
No 463
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.43 E-value=0.0085 Score=46.44 Aligned_cols=20 Identities=35% Similarity=0.343 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q 024152 122 VEIYGPEASGKTTLALHVIA 141 (271)
Q Consensus 122 i~I~G~~G~GKTtl~~~ia~ 141 (271)
++|+|++|+|||||+..+++
T Consensus 5 i~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999999864
No 464
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=95.42 E-value=0.03 Score=49.94 Aligned_cols=48 Identities=17% Similarity=0.193 Sum_probs=39.2
Q ss_pred HHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHh--hcCCeEEEEcCC
Q 024152 106 ALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQ--RQGGYCVFIDAE 156 (271)
Q Consensus 106 ~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~--~~~g~v~~~~~e 156 (271)
.|+.++. . +.-.++.+.|..|+||||++.++|..++ ..+.+|++++..
T Consensus 8 ~L~~~l~--~-~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D 57 (348)
T 3io3_A 8 TLESIVQ--H-DSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTD 57 (348)
T ss_dssp SSHHHHT--C-TTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECC
T ss_pred hHHHHhc--C-CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 3455554 1 2347999999999999999999999999 777799999987
No 465
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=95.41 E-value=0.017 Score=48.43 Aligned_cols=38 Identities=26% Similarity=0.361 Sum_probs=31.9
Q ss_pred cEEEE-EcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCC
Q 024152 120 RVVEI-YGPEASGKTTLALHVIAEAQRQGGYCVFIDAEH 157 (271)
Q Consensus 120 ~li~I-~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~ 157 (271)
.++.| .+..|+||||++.+++..++..+.+|++++...
T Consensus 3 ~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (260)
T 3q9l_A 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAI 41 (260)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 34555 567889999999999999998888999998764
No 466
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=95.41 E-value=0.017 Score=47.45 Aligned_cols=36 Identities=31% Similarity=0.266 Sum_probs=30.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCCCC
Q 024152 122 VEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHA 158 (271)
Q Consensus 122 i~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e~~ 158 (271)
....+..|+||||++.+++..++..+ +|++++....
T Consensus 4 ~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q 39 (209)
T 3cwq_A 4 TVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPN 39 (209)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTT
T ss_pred EEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCC
Confidence 34468899999999999999999888 9999986543
No 467
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.41 E-value=0.009 Score=47.46 Aligned_cols=22 Identities=23% Similarity=0.498 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 024152 121 VVEIYGPEASGKTTLALHVIAE 142 (271)
Q Consensus 121 li~I~G~~G~GKTtl~~~ia~~ 142 (271)
-++|+|++|+|||||+..++..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5789999999999999999875
No 468
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=95.39 E-value=0.017 Score=51.26 Aligned_cols=38 Identities=16% Similarity=0.193 Sum_probs=34.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEcCC
Q 024152 119 GRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAE 156 (271)
Q Consensus 119 G~li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~~e 156 (271)
-.++.+.|..|+||||++.++|..++..+.+|++++..
T Consensus 16 ~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D 53 (334)
T 3iqw_A 16 LRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTD 53 (334)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECC
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 46889999999999999999999999888899999876
No 469
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.39 E-value=0.009 Score=46.71 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 024152 121 VVEIYGPEASGKTTLALHVIAE 142 (271)
Q Consensus 121 li~I~G~~G~GKTtl~~~ia~~ 142 (271)
-++|+|++|+|||||++.+...
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999875
No 470
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=95.39 E-value=0.035 Score=50.73 Aligned_cols=38 Identities=18% Similarity=0.173 Sum_probs=27.8
Q ss_pred CCcEEEEEcCCCCcHHHHH-HHHHHHHhhcCCeEEEEcC
Q 024152 118 KGRVVEIYGPEASGKTTLA-LHVIAEAQRQGGYCVFIDA 155 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTtl~-~~ia~~~~~~~g~v~~~~~ 155 (271)
+|+.+++.||.|+|||..+ ..++..+...+..++|+..
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~P 39 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAP 39 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECc
Confidence 4788999999999999976 4444455555667787764
No 471
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.36 E-value=0.0075 Score=50.36 Aligned_cols=23 Identities=13% Similarity=0.330 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 024152 121 VVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 121 li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
-++|+|++|+|||||++.+++..
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 58999999999999999998743
No 472
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.36 E-value=0.0047 Score=52.53 Aligned_cols=27 Identities=22% Similarity=0.228 Sum_probs=23.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152 117 PKGRVVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 117 ~~G~li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
.++.+|.|.|.+|+||||++..++..+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 378899999999999999998887654
No 473
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.36 E-value=0.0098 Score=46.09 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=21.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 024152 118 KGRVVEIYGPEASGKTTLALHVIAE 142 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTtl~~~ia~~ 142 (271)
+.--++|+|++|+|||||+..+...
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3446899999999999999998764
No 474
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.36 E-value=0.0096 Score=47.07 Aligned_cols=22 Identities=18% Similarity=0.202 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 024152 121 VVEIYGPEASGKTTLALHVIAE 142 (271)
Q Consensus 121 li~I~G~~G~GKTtl~~~ia~~ 142 (271)
-++|+|++|+|||||+..+...
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999998864
No 475
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.35 E-value=0.0064 Score=53.31 Aligned_cols=26 Identities=15% Similarity=0.082 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHH
Q 024152 118 KGRVVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
.|.-+.|.||||+|||+|+..++...
T Consensus 45 ~~~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 45 TGGHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp HTCCEEEESCCCHHHHHHHHHHHHHT
T ss_pred cCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 35679999999999999999998754
No 476
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=95.34 E-value=0.033 Score=51.22 Aligned_cols=38 Identities=18% Similarity=0.177 Sum_probs=29.9
Q ss_pred CCcEEEEEcCCCCcHHH-HHHHHHHHHhhcCCeEEEEcC
Q 024152 118 KGRVVEIYGPEASGKTT-LALHVIAEAQRQGGYCVFIDA 155 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTt-l~~~ia~~~~~~~g~v~~~~~ 155 (271)
.++++++.||.|+|||+ ++..++..+...+..++++..
T Consensus 18 ~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~lvl~P 56 (451)
T 2jlq_A 18 KKRLTIMDLHPGAGKTKRILPSIVREALLRRLRTLILAP 56 (451)
T ss_dssp TTCEEEECCCTTSSCCTTHHHHHHHHHHHTTCCEEEEES
T ss_pred cCCeEEEECCCCCCHhhHHHHHHHHHHHhcCCcEEEECC
Confidence 57899999999999999 577766666556667788763
No 477
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=95.34 E-value=0.021 Score=46.56 Aligned_cols=34 Identities=18% Similarity=0.272 Sum_probs=29.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCeEEEEc
Q 024152 121 VVEIYGPEASGKTTLALHVIAEAQRQGGYCVFID 154 (271)
Q Consensus 121 li~I~G~~G~GKTtl~~~ia~~~~~~~g~v~~~~ 154 (271)
+|.|-|..||||||.+..++..+...+-+|++..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr 35 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 6889999999999999999998887777766654
No 478
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=95.33 E-value=0.021 Score=51.07 Aligned_cols=49 Identities=14% Similarity=0.193 Sum_probs=38.8
Q ss_pred HHHHHhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHHh--hcCCeEEEEcCCC
Q 024152 106 ALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQ--RQGGYCVFIDAEH 157 (271)
Q Consensus 106 ~LD~~l~~GGl~~G~li~I~G~~G~GKTtl~~~ia~~~~--~~~g~v~~~~~e~ 157 (271)
.|+.++. . +.-.++...|..|+||||++.++|..++ ..+.+|++++...
T Consensus 8 ~l~~l~~--~-~~~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~ 58 (354)
T 2woj_A 8 NLHSLIT--S-TTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDP 58 (354)
T ss_dssp SCHHHHT--C-SSCCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCS
T ss_pred cHHHHhc--C-CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCC
Confidence 3555654 1 2345788889999999999999999999 7778999998765
No 479
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.33 E-value=0.011 Score=47.63 Aligned_cols=24 Identities=33% Similarity=0.364 Sum_probs=21.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHH
Q 024152 118 KGRVVEIYGPEASGKTTLALHVIA 141 (271)
Q Consensus 118 ~G~li~I~G~~G~GKTtl~~~ia~ 141 (271)
.|.-++|.|++|+||||+++.+..
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 466799999999999999998876
No 480
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.32 E-value=0.01 Score=46.86 Aligned_cols=23 Identities=22% Similarity=0.515 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 024152 121 VVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 121 li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
-++|+|++|+|||||+..+....
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999998643
No 481
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.31 E-value=0.01 Score=46.35 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 024152 121 VVEIYGPEASGKTTLALHVIAE 142 (271)
Q Consensus 121 li~I~G~~G~GKTtl~~~ia~~ 142 (271)
-++|+|++|+|||||+..++..
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999998864
No 482
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.31 E-value=0.01 Score=46.24 Aligned_cols=23 Identities=22% Similarity=0.211 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 024152 121 VVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 121 li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
-++|+|++|+|||||+..+....
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998653
No 483
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.28 E-value=0.0091 Score=46.11 Aligned_cols=20 Identities=30% Similarity=0.323 Sum_probs=18.3
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q 024152 122 VEIYGPEASGKTTLALHVIA 141 (271)
Q Consensus 122 i~I~G~~G~GKTtl~~~ia~ 141 (271)
++|+|++|+|||||++.+++
T Consensus 5 i~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEESTTSSHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHcC
Confidence 78999999999999998864
No 484
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.27 E-value=0.01 Score=47.14 Aligned_cols=22 Identities=18% Similarity=0.447 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 024152 121 VVEIYGPEASGKTTLALHVIAE 142 (271)
Q Consensus 121 li~I~G~~G~GKTtl~~~ia~~ 142 (271)
-++|+|++|+|||||+..+++.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999875
No 485
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.26 E-value=0.01 Score=48.31 Aligned_cols=24 Identities=33% Similarity=0.516 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHH
Q 024152 120 RVVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 120 ~li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
--++|+|++|+|||||+..++...
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998754
No 486
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.26 E-value=0.0082 Score=47.85 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 024152 120 RVVEIYGPEASGKTTLALHVIAE 142 (271)
Q Consensus 120 ~li~I~G~~G~GKTtl~~~ia~~ 142 (271)
--++|+|++|+|||||++.+++.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999864
No 487
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=95.25 E-value=0.01 Score=47.50 Aligned_cols=23 Identities=26% Similarity=0.314 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 024152 120 RVVEIYGPEASGKTTLALHVIAE 142 (271)
Q Consensus 120 ~li~I~G~~G~GKTtl~~~ia~~ 142 (271)
--++|+|++|+|||||++.++..
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999998863
No 488
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.24 E-value=0.011 Score=47.14 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 024152 121 VVEIYGPEASGKTTLALHVIAE 142 (271)
Q Consensus 121 li~I~G~~G~GKTtl~~~ia~~ 142 (271)
-++|+|++|+|||||+..++..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999998874
No 489
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=95.24 E-value=0.016 Score=49.98 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=21.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHh
Q 024152 122 VEIYGPEASGKTTLALHVIAEAQ 144 (271)
Q Consensus 122 i~I~G~~G~GKTtl~~~ia~~~~ 144 (271)
+.|.||||+|||+++..++..+.
T Consensus 41 ~ll~G~~G~GKt~la~~l~~~l~ 63 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALARDLF 63 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHHHHH
T ss_pred EEEECcCCcCHHHHHHHHHHHhc
Confidence 89999999999999999998763
No 490
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.24 E-value=0.0095 Score=46.58 Aligned_cols=22 Identities=36% Similarity=0.468 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 024152 121 VVEIYGPEASGKTTLALHVIAE 142 (271)
Q Consensus 121 li~I~G~~G~GKTtl~~~ia~~ 142 (271)
-++|+|++|+|||||+..+...
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4789999999999999998854
No 491
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.22 E-value=0.011 Score=46.38 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 024152 121 VVEIYGPEASGKTTLALHVIAE 142 (271)
Q Consensus 121 li~I~G~~G~GKTtl~~~ia~~ 142 (271)
-++|+|++|+|||||++.++..
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 5899999999999999998864
No 492
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=95.22 E-value=0.012 Score=51.04 Aligned_cols=23 Identities=39% Similarity=0.442 Sum_probs=21.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHh
Q 024152 122 VEIYGPEASGKTTLALHVIAEAQ 144 (271)
Q Consensus 122 i~I~G~~G~GKTtl~~~ia~~~~ 144 (271)
+.|.||||+||||++..++..+.
T Consensus 49 ~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 49 LLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhc
Confidence 89999999999999999998764
No 493
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.21 E-value=0.012 Score=46.17 Aligned_cols=23 Identities=30% Similarity=0.339 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 024152 121 VVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 121 li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
-++|+|++|+|||||+..+....
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 57999999999999999987643
No 494
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=95.20 E-value=0.023 Score=52.07 Aligned_cols=21 Identities=33% Similarity=0.450 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 024152 121 VVEIYGPEASGKTTLALHVIA 141 (271)
Q Consensus 121 li~I~G~~G~GKTtl~~~ia~ 141 (271)
.++|+|+||+|||||++.+++
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~ 25 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAG 25 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEE
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999998864
No 495
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.19 E-value=0.012 Score=46.19 Aligned_cols=22 Identities=23% Similarity=0.510 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 024152 121 VVEIYGPEASGKTTLALHVIAE 142 (271)
Q Consensus 121 li~I~G~~G~GKTtl~~~ia~~ 142 (271)
-++|+|++|+|||||+..+...
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4799999999999999998865
No 496
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.19 E-value=0.012 Score=47.26 Aligned_cols=22 Identities=32% Similarity=0.332 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 024152 121 VVEIYGPEASGKTTLALHVIAE 142 (271)
Q Consensus 121 li~I~G~~G~GKTtl~~~ia~~ 142 (271)
-++|+|+||+|||||++.+++.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999999863
No 497
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.19 E-value=0.011 Score=46.56 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 024152 121 VVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 121 li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
-++|+|++|+|||||+..+....
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999988653
No 498
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.18 E-value=0.012 Score=47.00 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 024152 121 VVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 121 li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
-++|+|++|+|||||++.++...
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999887653
No 499
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.17 E-value=0.013 Score=53.33 Aligned_cols=25 Identities=24% Similarity=0.481 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 024152 120 RVVEIYGPEASGKTTLALHVIAEAQ 144 (271)
Q Consensus 120 ~li~I~G~~G~GKTtl~~~ia~~~~ 144 (271)
.+++|+||+|+|||||+..++....
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 4899999999999999999987663
No 500
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.16 E-value=0.013 Score=49.19 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 024152 121 VVEIYGPEASGKTTLALHVIAEA 143 (271)
Q Consensus 121 li~I~G~~G~GKTtl~~~ia~~~ 143 (271)
-.+|.|+|||||||++..++...
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999988765
Done!