BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024153
(271 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IXC|A Chain A, Crystal Structure Of Hexapeptide Transferase Family
Protein From Anaplasma Phagocytophilum
Length = 191
Score = 163 bits (413), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 78/161 (48%), Positives = 115/161 (71%), Gaps = 5/161 (3%)
Query: 52 APVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKS 111
+P V+ F+A +A IIGDV +G+ +SIWYG VLRGDV+ I +G GTNIQDN++VH
Sbjct: 33 SPSVDSTAFIAGNARIIGDVCIGKNASIWYGTVLRGDVDKIEVGEGTNIQDNTVVHT--D 90
Query: 112 NLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQ 171
++ G T+IG VT+GHS +LH CT+ + AFVGMG+ ++D +E+ +M+AAG+L+ +
Sbjct: 91 SMHGD---TVIGKFVTIGHSCILHACTLGNNAFVGMGSIVMDRAVMEEGSMLAAGSLLTR 147
Query: 172 NTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINYSNLAR 212
+ GE+W G PA+FLR +TEEE+ ++ +SA NY L+R
Sbjct: 148 GKIVKSGELWAGRPAKFLRMMTEEEILYLQKSAENYIALSR 188
>pdb|3R1W|A Chain A, Crystal Structure Of A Carbonic Anhydrase From A Crude Oil
Degrading Psychrophilic Library
pdb|3R1W|B Chain B, Crystal Structure Of A Carbonic Anhydrase From A Crude Oil
Degrading Psychrophilic Library
pdb|3R1W|C Chain C, Crystal Structure Of A Carbonic Anhydrase From A Crude Oil
Degrading Psychrophilic Library
Length = 189
Score = 135 bits (339), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 73/180 (40%), Positives = 110/180 (61%), Gaps = 4/180 (2%)
Query: 39 LSRHRTLMNIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGT 98
L+ RT I +P + + VF+ S+ IIGDV++G S+W V+RGD++ I IG+ T
Sbjct: 9 LTSVRTYQGI---SPKLGERVFVDRSSVIIGDVELGDDCSVWPLAVIRGDMHHIRIGART 65
Query: 99 NIQDNSLVHVAK-SNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYV 157
++QD S++H+ S+ P IIGD+VT+GH A+LHGCT+ + +GM + ++DG V
Sbjct: 66 SVQDGSVLHITHASDYNPGGYPLIIGDDVTIGHQAMLHGCTIGNRVLIGMKSMIMDGAIV 125
Query: 158 EKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINYSNLARVHAAE 217
E +VAAGA V + G V+ G PA+ +R +TE+E +F + A NY L H AE
Sbjct: 126 EDEVIVAAGATVSPGKVLESGFVYMGTPAKKVRPITEKERSFFTYGAGNYVRLKDKHLAE 185
>pdb|3TIO|A Chain A, Crystal Structures Of Yrda From Escherichia Coli, A
Homologous Protein Of Gamma-Class Carbonic Anhydrase,
Show Possible Allosteric Conformations
pdb|3TIO|B Chain B, Crystal Structures Of Yrda From Escherichia Coli, A
Homologous Protein Of Gamma-Class Carbonic Anhydrase,
Show Possible Allosteric Conformations
pdb|3TIO|C Chain C, Crystal Structures Of Yrda From Escherichia Coli, A
Homologous Protein Of Gamma-Class Carbonic Anhydrase,
Show Possible Allosteric Conformations
pdb|3TIO|D Chain D, Crystal Structures Of Yrda From Escherichia Coli, A
Homologous Protein Of Gamma-Class Carbonic Anhydrase,
Show Possible Allosteric Conformations
pdb|3TIO|E Chain E, Crystal Structures Of Yrda From Escherichia Coli, A
Homologous Protein Of Gamma-Class Carbonic Anhydrase,
Show Possible Allosteric Conformations
pdb|3TIO|F Chain F, Crystal Structures Of Yrda From Escherichia Coli, A
Homologous Protein Of Gamma-Class Carbonic Anhydrase,
Show Possible Allosteric Conformations
pdb|3TIS|A Chain A, Crystal Structures Of Yrda From Escherichia Coli, A
Homologous Protein Of Gamma-Class Carbonic Anhydrases,
Show Possible Allosteric Conformations
pdb|3TIS|B Chain B, Crystal Structures Of Yrda From Escherichia Coli, A
Homologous Protein Of Gamma-Class Carbonic Anhydrases,
Show Possible Allosteric Conformations
pdb|3TIS|C Chain C, Crystal Structures Of Yrda From Escherichia Coli, A
Homologous Protein Of Gamma-Class Carbonic Anhydrases,
Show Possible Allosteric Conformations
Length = 183
Score = 132 bits (333), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/159 (43%), Positives = 101/159 (63%), Gaps = 1/159 (0%)
Query: 50 DKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVA 109
D P + + V + S+ +IGDV++ IW V+RGDV+ + IG+ TNIQD S++HV
Sbjct: 9 DLFPQIGQRVMIDDSSVVIGDVRLADDVGIWPLVVIRGDVHYVQIGARTNIQDGSMLHVT 68
Query: 110 -KSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGAL 168
KS+ P IG++VTVGH +LHGCT+ + VGMG+ LLDG VE M+ AG+L
Sbjct: 69 HKSSYNPDGNPLTIGEDVTVGHKVMLHGCTIGNRVLVGMGSILLDGAIVEDDVMIGAGSL 128
Query: 169 VRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINY 207
V QN ++ G ++ G+P + +R L++EE A + SA NY
Sbjct: 129 VPQNKRLESGYLYLGSPVKQIRPLSDEEKAGLRYSANNY 167
>pdb|3R3R|A Chain A, Structure Of The Yrda Ferripyochelin Binding Protein From
Salmonella Enterica
Length = 187
Score = 129 bits (325), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 106/168 (63%), Gaps = 8/168 (4%)
Query: 43 RTLMNIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQD 102
R N+F P + + V + S+ +IGDV++ IW V+RGDVN ++IG+ TNIQD
Sbjct: 9 RPYKNLF---PGIGQRVMIDTSSVVIGDVRLADDVGIWPLVVIRGDVNYVAIGARTNIQD 65
Query: 103 NSLVHV---AKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEK 159
S++HV + SN G P IIG++VTVGH +LHGCT+ + VGMG+ +LDG +E
Sbjct: 66 GSVLHVTHKSSSNPHGN--PLIIGEDVTVGHKVMLHGCTIGNRVLVGMGSIVLDGAIIED 123
Query: 160 HAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINY 207
M+ AG+LV Q+ ++ G ++ G+P + +R L++ E + + SA NY
Sbjct: 124 DVMIGAGSLVPQHKRLESGYLYLGSPVKQIRPLSDAERSGLQYSANNY 171
>pdb|1XHD|A Chain A, X-Ray Crystal Structure Of Putative Acetyltransferase,
Product Of Bc4754 Gene [bacillus Cereus]
Length = 173
Score = 119 bits (297), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 86/147 (58%), Gaps = 6/147 (4%)
Query: 50 DKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVA 109
+K P + F+A +I GDV VG SSIW+ V+RGDV+ IG N+QD +H +
Sbjct: 10 EKKPKIASSAFIADYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQS 69
Query: 110 KSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALV 169
P I+ D+VTVGH +LH C ++ +A +G G+ +LDG + + A + AG+LV
Sbjct: 70 PQ------YPLILEDDVTVGHQVILHSCHIKKDALIGXGSIILDGAEIGEGAFIGAGSLV 123
Query: 170 RQNTKIPCGEVWGGNPARFLRKLTEEE 196
Q KIP + G PA+ +R+LT E+
Sbjct: 124 SQGKKIPPNTLAFGRPAKVIRELTAED 150
>pdb|3VNP|A Chain A, Crystal Structure Of Hypothetical Protein (Gk2848) From
Geobacillus Kaustophilus
pdb|3VNP|B Chain B, Crystal Structure Of Hypothetical Protein (Gk2848) From
Geobacillus Kaustophilus
pdb|3VNP|C Chain C, Crystal Structure Of Hypothetical Protein (Gk2848) From
Geobacillus Kaustophilus
Length = 183
Score = 118 bits (296), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/147 (40%), Positives = 87/147 (59%), Gaps = 6/147 (4%)
Query: 51 KAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAK 110
K P + F+A +I GDV +G +SIW+ V+RGDV IG+ NIQDNS++H +
Sbjct: 9 KTPQIAASAFIADYVTITGDVVIGEETSIWFNTVIRGDVAPTVIGNRVNIQDNSILHQSP 68
Query: 111 SNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVR 170
+N P II D VTVGH +LH V A +GMG+ +LD + + A + AG+LV
Sbjct: 69 NN------PLIIEDGVTVGHQVILHSAIVRKNALIGMGSIILDRAEIGEGAFIGAGSLVP 122
Query: 171 QNTKIPCGEVWGGNPARFLRKLTEEEM 197
KIP + G PA+ +R+LTE+++
Sbjct: 123 PGKKIPPNTLALGRPAKVVRELTEDDI 149
>pdb|1V3W|A Chain A, Structure Of Ferripyochelin Binding Protein From
Pyrococcus Horikoshii Ot3
pdb|1V67|A Chain A, Structure Of Ferripyochelin Binding Protein From
Pyrococcus Horikoshii Ot3
pdb|2FKO|A Chain A, Structure Of Ph1591 From Pyrococcus Horikoshii Ot3
Length = 173
Score = 116 bits (291), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 98/170 (57%), Gaps = 6/170 (3%)
Query: 45 LMNIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNS 104
+ I K P ++ F+ +A +IGDV + +S+W VLRGD+ I +G +N+QDN
Sbjct: 3 IYEINGKKPRIHPSAFVDENAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNV 62
Query: 105 LVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVA 164
+H + PT IG+ VT+GH+A++HG V + +G+ + +LDG + H ++
Sbjct: 63 SIHTSHG------YPTEIGEYVTIGHNAMVHGAKVGNYVIIGISSVILDGAKIGDHVIIG 116
Query: 165 AGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINYSNLARVH 214
AGA+V N +IP + G P + +R+LTEEE+ + ++A Y LA H
Sbjct: 117 AGAVVPPNKEIPDYSLVLGVPGKVVRQLTEEEIEWTKKNAEIYVELAEKH 166
>pdb|3OU9|A Chain A, Crystal Structure Of Gamma-Carbonic Anhydrase W19f Mutant
From Methanosarcina Thermophila
Length = 213
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 88/198 (44%), Gaps = 25/198 (12%)
Query: 44 TLMNIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVN-SISIGSGTNIQD 102
T N APV++ ++ P AS+IG+V +G + +R D I +G +N+QD
Sbjct: 17 TPFNPEPSAPVIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQD 76
Query: 103 NSLVHVAKS-------------NLAGKVLPTIIGDNVTVGHSAVLHG-CTVEDEAFVGMG 148
++H ++ + GK IG+NV++ H + +HG V D+ F+GM
Sbjct: 77 GVVLHALETINEEGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQ 136
Query: 149 ATLL-----DGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNP-ARFLRKLTEEEMAFISQ 202
A + + +E + A G + IP G V A L ++T++ +
Sbjct: 137 AFVFKSKVGNNCVLEPRS-AAIGVTIPDGRYIPAGMVVTSQAEADKLPEVTDDYAYSHTN 195
Query: 203 SAINYSNLARVHAAENAK 220
A+ Y N VH AE K
Sbjct: 196 EAVVYVN---VHLAEGYK 210
>pdb|3OTZ|A Chain A, Crystal Structure Of Gamma-Carbonic Anhydrase W19a Mutant
From Metanosarcina Thermophila
Length = 213
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 88/198 (44%), Gaps = 25/198 (12%)
Query: 44 TLMNIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVN-SISIGSGTNIQD 102
T N APV++ ++ P AS+IG+V +G + +R D I +G +N+QD
Sbjct: 17 TPANPEPSAPVIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQD 76
Query: 103 NSLVHVAKS-------------NLAGKVLPTIIGDNVTVGHSAVLHG-CTVEDEAFVGMG 148
++H ++ + GK IG+NV++ H + +HG V D+ F+GM
Sbjct: 77 GVVLHALETINEEGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQ 136
Query: 149 ATLL-----DGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNP-ARFLRKLTEEEMAFISQ 202
A + + +E + A G + IP G V A L ++T++ +
Sbjct: 137 AFVFKSKVGNNCVLEPRS-AAIGVTIPDGRYIPAGMVVTSQAEADKLPEVTDDYAYSHTN 195
Query: 203 SAINYSNLARVHAAENAK 220
A+ Y N VH AE K
Sbjct: 196 EAVVYVN---VHLAEGYK 210
>pdb|1QRF|A Chain A, A Closer Look At The Active Site Of Gamma-Carbonic
Anhydrases: High Resolution Crystallographic Studies Of
The Carbonic Anhydrase From Methanosarcina Thermophila
pdb|1QRG|A Chain A, A Closer Look And The Active Site Of Gamma-Carbonic
Anhydrases: High Resolution Crystallographic Studies Of
The Carbonic Anhydrase From Methanosarcina Thermophila
pdb|1QRM|A Chain A, A Closer Look At The Active Site Of Gamma-carbonic
Anhydrases: High Resolution Crystal Structures Of The
Carbonic Anhydrase From Methanosarcina Thermophila
Length = 213
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 88/198 (44%), Gaps = 25/198 (12%)
Query: 44 TLMNIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVN-SISIGSGTNIQD 102
T N APV++ ++ P AS+IG+V +G + +R D I +G +N+QD
Sbjct: 17 TPWNPEPSAPVIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQD 76
Query: 103 NSLVHVAKS-------------NLAGKVLPTIIGDNVTVGHSAVLHG-CTVEDEAFVGMG 148
++H ++ + GK IG+NV++ H + +HG V D+ F+GM
Sbjct: 77 GVVLHALETINEEGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQ 136
Query: 149 ATLL-----DGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNP-ARFLRKLTEEEMAFISQ 202
A + + +E + A G + IP G V A L ++T++ +
Sbjct: 137 AFVFKSKVGNNCVLEPRS-AAIGVTIPDGRYIPAGMVVTSQAEADKLPEVTDDYAYSHTN 195
Query: 203 SAINYSNLARVHAAENAK 220
A+ Y N VH AE K
Sbjct: 196 EAVVYVN---VHLAEGYK 210
>pdb|1THJ|A Chain A, Carbonic Anhydrase From Methanosarcina
pdb|1THJ|B Chain B, Carbonic Anhydrase From Methanosarcina
pdb|1THJ|C Chain C, Carbonic Anhydrase From Methanosarcina
Length = 214
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 88/198 (44%), Gaps = 25/198 (12%)
Query: 44 TLMNIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVN-SISIGSGTNIQD 102
T N APV++ ++ P AS+IG+V +G + +R D I +G +N+QD
Sbjct: 18 TPWNPEPSAPVIDPTAYIDPEASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQD 77
Query: 103 NSLVHVAKS-------------NLAGKVLPTIIGDNVTVGHSAVLHG-CTVEDEAFVGMG 148
++H ++ + GK IG+NV++ H + +HG V D+ F+GM
Sbjct: 78 GVVLHALETINEEGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQ 137
Query: 149 ATLL-----DGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNP-ARFLRKLTEEEMAFISQ 202
A + + +E + A G + IP G V A L ++T++ +
Sbjct: 138 AFVFKSKVGNNCVLEPRS-AAIGVTIPDGRYIPAGMVVTSQAEADKLPEVTDDYAYSHTN 196
Query: 203 SAINYSNLARVHAAENAK 220
A+ Y N VH AE K
Sbjct: 197 EAVVYVN---VHLAEGYK 211
>pdb|1QRL|A Chain A, A Closer Look At The Active Site Of Gamma-Carbonic
Anhydrases: High Resolution Crystallographic Studies Of
The Carbonic Anhydrase From Methanosarcina Thermophila
Length = 214
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 88/198 (44%), Gaps = 25/198 (12%)
Query: 44 TLMNIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVN-SISIGSGTNIQD 102
T N APV++ ++ P AS+IG+V +G + +R D I +G +N+QD
Sbjct: 18 TPWNPEPSAPVIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQD 77
Query: 103 NSLVHVAKS-------------NLAGKVLPTIIGDNVTVGHSAVLHG-CTVEDEAFVGMG 148
++H ++ + GK IG+NV++ H + +HG V D+ F+GM
Sbjct: 78 GVVLHALETINEEGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQ 137
Query: 149 ATLL-----DGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNP-ARFLRKLTEEEMAFISQ 202
A + + +E + A G + IP G V A L ++T++ +
Sbjct: 138 AFVFKSKVGNNCVLEPRS-AAIGVTIPDGRYIPAGMVVTSQAEADKLPEVTDDYAYSHTN 196
Query: 203 SAINYSNLARVHAAENAK 220
A+ Y N VH AE K
Sbjct: 197 EAVVYVN---VHLAEGYK 211
>pdb|3OTM|A Chain A, Crystal Structures Of Wild-Type Gamma-Carbonic Anhydrase
From Methanosarcina Thermophila
Length = 212
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 88/198 (44%), Gaps = 25/198 (12%)
Query: 44 TLMNIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVN-SISIGSGTNIQD 102
T N APV++ ++ P AS+IG+V +G + +R D I +G +N+QD
Sbjct: 16 TPWNPEPSAPVIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQD 75
Query: 103 NSLVHVAKS-------------NLAGKVLPTIIGDNVTVGHSAVLHG-CTVEDEAFVGMG 148
++H ++ + GK IG+NV++ H + +HG V D+ F+GM
Sbjct: 76 GVVLHALETINEEGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQ 135
Query: 149 ATLL-----DGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNP-ARFLRKLTEEEMAFISQ 202
A + + +E + A G + IP G V A L ++T++ +
Sbjct: 136 AFVFKSKVGNNCVLEPRS-AAIGVTIPDGRYIPAGMVVTSQAEADKLPEVTDDYAYSHTN 194
Query: 203 SAINYSNLARVHAAENAK 220
A+ Y N VH AE K
Sbjct: 195 EAVVYVN---VHLAEGYK 209
>pdb|1QQ0|A Chain A, Cobalt Substituted Carbonic Anhydrase From Methanosarcina
Thermophila
pdb|1QRE|A Chain A, A Closer Look At The Active Site Of Gamma-Carbonic
Anhydrases: High Resolution Crystallographic Studies Of
The Carbonic Anhydrase From Methanosarcina Thermophila
Length = 247
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 88/198 (44%), Gaps = 25/198 (12%)
Query: 44 TLMNIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVN-SISIGSGTNIQD 102
T N APV++ ++ P AS+IG+V +G + +R D I +G +N+QD
Sbjct: 51 TPWNPEPSAPVIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQD 110
Query: 103 NSLVHVAKS-------------NLAGKVLPTIIGDNVTVGHSAVLHG-CTVEDEAFVGMG 148
++H ++ + GK IG+NV++ H + +HG V D+ F+GM
Sbjct: 111 GVVLHALETINEEGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQ 170
Query: 149 ATLL-----DGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNP-ARFLRKLTEEEMAFISQ 202
A + + +E + A G + IP G V A L ++T++ +
Sbjct: 171 AFVFKSKVGNNCVLEPRS-AAIGVTIPDGRYIPAGMVVTSQAEADKLPEVTDDYAYSHTN 229
Query: 203 SAINYSNLARVHAAENAK 220
A+ Y N VH AE K
Sbjct: 230 EAVVYVN---VHLAEGYK 244
>pdb|3OUP|A Chain A, Crystal Structure Of The Gamma-Carbonic Anhydrase W19n
Mutant From Methanosarcina Thermophila
Length = 213
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 88/198 (44%), Gaps = 25/198 (12%)
Query: 44 TLMNIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVN-SISIGSGTNIQD 102
T N APV++ ++ P AS+IG+V +G + +R D I +G +N+QD
Sbjct: 17 TPNNPEPSAPVIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQD 76
Query: 103 NSLVHVAKS-------------NLAGKVLPTIIGDNVTVGHSAVLHG-CTVEDEAFVGMG 148
++H ++ + GK IG+NV++ H + +HG V D+ F+GM
Sbjct: 77 GVVLHALETINEEGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQ 136
Query: 149 ATLL-----DGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNP-ARFLRKLTEEEMAFISQ 202
A + + +E + A G + IP G V A L ++T++ +
Sbjct: 137 AFVFKSKVGNNCVLEPRS-AAIGVTIPDGRYIPAGMVVTSQAEADKLPEVTDDYAYSHTN 195
Query: 203 SAINYSNLARVHAAENAK 220
A+ Y N VH AE K
Sbjct: 196 EAVVYVN---VHLAEGYK 210
>pdb|3OW5|A Chain A, Crystal Structure Of The Y200a Mutant Of Gamma Carbonic
Anhydrase From Methanosarcina Thermophila
Length = 213
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 60/124 (48%), Gaps = 15/124 (12%)
Query: 44 TLMNIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVN-SISIGSGTNIQD 102
T N APV++ ++ P AS+IG+V +G + +R D I +G +N+QD
Sbjct: 17 TPWNPEPSAPVIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQD 76
Query: 103 NSLVHVAKS-------------NLAGKVLPTIIGDNVTVGHSAVLHG-CTVEDEAFVGMG 148
++H ++ + GK IG+NV++ H + +HG V D+ F+GM
Sbjct: 77 GVVLHALETINEEGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQ 136
Query: 149 ATLL 152
A +
Sbjct: 137 AFVF 140
>pdb|3KWC|A Chain A, Oxidized, Active Structure Of The Beta-carboxysomal
Gamma-carbonic Anhydrase, Ccmm
pdb|3KWC|B Chain B, Oxidized, Active Structure Of The Beta-carboxysomal
Gamma-carbonic Anhydrase, Ccmm
pdb|3KWC|C Chain C, Oxidized, Active Structure Of The Beta-carboxysomal
Gamma-carbonic Anhydrase, Ccmm
pdb|3KWC|D Chain D, Oxidized, Active Structure Of The Beta-carboxysomal
Gamma-carbonic Anhydrase, Ccmm
pdb|3KWC|E Chain E, Oxidized, Active Structure Of The Beta-carboxysomal
Gamma-carbonic Anhydrase, Ccmm
pdb|3KWC|F Chain F, Oxidized, Active Structure Of The Beta-carboxysomal
Gamma-carbonic Anhydrase, Ccmm
Length = 229
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 86/195 (44%), Gaps = 26/195 (13%)
Query: 53 PVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNS-ISIGSGTNIQDNSLVHVAKS 111
P + ++ +++IGDV++ I G +R D + IGS TNIQD ++H +
Sbjct: 40 PEIAPTAYVHSFSNLIGDVRIKDYVHIAPGTSIRADEGTPFHIGSRTNIQDGVVIHGLQQ 99
Query: 112 NLA----GKVLPTIIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDGVYVEKHAMVAAG 166
G+ IGDNV++ H A++HG + D F+G +T+ + A V AG
Sbjct: 100 GRVIGDDGQEYSVWIGDNVSITHMALIHGPAYIGDGCFIGFRSTVFN-------ARVGAG 152
Query: 167 ALVR-----QNTKIPCGE-------VWGGNPARFLRKLTEEEMAFISQ-SAINYSNLARV 213
+V Q+ +IP G+ + A L + E ++ F IN + L+
Sbjct: 153 CVVMMHVLIQDVEIPPGKYVPSGMVITTQQQADRLPNVEESDIHFAQHVVGINEALLSGY 212
Query: 214 HAAENAKSFDEIEFE 228
AEN I E
Sbjct: 213 QCAENIACIAPIRNE 227
>pdb|3KWD|A Chain A, Inactive Truncation Of The Beta-Carboxysomal
Gamma-Carbonic Anhydrase, Ccmm, Form 1
pdb|3KWE|A Chain A, Inactive Truncation Of The Beta-Carboxysomal
Gamma-Carbonic Anhydrase, Ccmm, Form 2
Length = 213
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 68/138 (49%), Gaps = 18/138 (13%)
Query: 53 PVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNS-ISIGSGTNIQDNSLVHVAKS 111
P + ++ +++IGDV++ I G +R D + IGS TNIQD ++H +
Sbjct: 40 PEIAPTAYVHSFSNLIGDVRIKDYVHIAPGTSIRADEGTPFHIGSRTNIQDGVVIHGLQQ 99
Query: 112 NLA----GKVLPTIIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDGVYVEKHAMVAAG 166
G+ IGDNV++ H A++HG + D F+G +T+ + A V AG
Sbjct: 100 GRVIGDDGQEYSVWIGDNVSITHMALIHGPAYIGDGCFIGFRSTVFN-------ARVGAG 152
Query: 167 ALVR-----QNTKIPCGE 179
+V Q+ +IP G+
Sbjct: 153 CVVMMHVLIQDVEIPPGK 170
>pdb|3ECT|A Chain A, Crystal Structure Of The Hexapeptide-repeat Containing-
Acetyltransferase Vca0836 From Vibrio Cholerae
pdb|3NZ2|A Chain A, Crystal Structure Of Hexapeptide-Repeat
Containing-Acetyltransferase Vca0836 Complexed With
Acetyl Co Enzyme A From Vibrio Cholerae O1 Biovar Eltor
pdb|3NZ2|B Chain B, Crystal Structure Of Hexapeptide-Repeat
Containing-Acetyltransferase Vca0836 Complexed With
Acetyl Co Enzyme A From Vibrio Cholerae O1 Biovar Eltor
pdb|3NZ2|C Chain C, Crystal Structure Of Hexapeptide-Repeat
Containing-Acetyltransferase Vca0836 Complexed With
Acetyl Co Enzyme A From Vibrio Cholerae O1 Biovar Eltor
pdb|3NZ2|D Chain D, Crystal Structure Of Hexapeptide-Repeat
Containing-Acetyltransferase Vca0836 Complexed With
Acetyl Co Enzyme A From Vibrio Cholerae O1 Biovar Eltor
pdb|3NZ2|E Chain E, Crystal Structure Of Hexapeptide-Repeat
Containing-Acetyltransferase Vca0836 Complexed With
Acetyl Co Enzyme A From Vibrio Cholerae O1 Biovar Eltor
pdb|3NZ2|F Chain F, Crystal Structure Of Hexapeptide-Repeat
Containing-Acetyltransferase Vca0836 Complexed With
Acetyl Co Enzyme A From Vibrio Cholerae O1 Biovar Eltor
pdb|3NZ2|G Chain G, Crystal Structure Of Hexapeptide-Repeat
Containing-Acetyltransferase Vca0836 Complexed With
Acetyl Co Enzyme A From Vibrio Cholerae O1 Biovar Eltor
pdb|3NZ2|H Chain H, Crystal Structure Of Hexapeptide-Repeat
Containing-Acetyltransferase Vca0836 Complexed With
Acetyl Co Enzyme A From Vibrio Cholerae O1 Biovar Eltor
pdb|3NZ2|I Chain I, Crystal Structure Of Hexapeptide-Repeat
Containing-Acetyltransferase Vca0836 Complexed With
Acetyl Co Enzyme A From Vibrio Cholerae O1 Biovar Eltor
pdb|3NZ2|J Chain J, Crystal Structure Of Hexapeptide-Repeat
Containing-Acetyltransferase Vca0836 Complexed With
Acetyl Co Enzyme A From Vibrio Cholerae O1 Biovar Eltor
pdb|3NZ2|K Chain K, Crystal Structure Of Hexapeptide-Repeat
Containing-Acetyltransferase Vca0836 Complexed With
Acetyl Co Enzyme A From Vibrio Cholerae O1 Biovar Eltor
pdb|3NZ2|L Chain L, Crystal Structure Of Hexapeptide-Repeat
Containing-Acetyltransferase Vca0836 Complexed With
Acetyl Co Enzyme A From Vibrio Cholerae O1 Biovar Eltor
Length = 195
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 23/119 (19%)
Query: 95 GSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCT---------------- 138
G I D++ ++ L G P IGD+V +G S + +
Sbjct: 74 GKTIRIGDHTFINXNVVXLDGA--PITIGDHVLIGPSTQFYTASHSLDYRRRQAWETICK 131
Query: 139 ---VEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTE 194
+ED+ ++G + GV + ++VAA ++V Q+ +P + GG PAR LR L +
Sbjct: 132 PIVIEDDVWIGGNVVINQGVTIGARSVVAANSVVNQD--VPPDTLVGGTPARILRSLKD 188
>pdb|3FS8|A Chain A, Crystal Structure Of Qdtc, The Dtdp-3-Amino-3,6-Dideoxy-D-
Glucose N-Acetyl Transferase From Thermoanaerobacterium
Thermosaccharolyticum In Complex With Acetyl-Coa
pdb|3FS8|B Chain B, Crystal Structure Of Qdtc, The Dtdp-3-Amino-3,6-Dideoxy-D-
Glucose N-Acetyl Transferase From Thermoanaerobacterium
Thermosaccharolyticum In Complex With Acetyl-Coa
pdb|3FSB|A Chain A, Crystal Structure Of Qdtc, The Dtdp-3-Amino-3,6-Dideoxy-D-
Glucose N-Acetyl Transferase From Thermoanaerobacterium
Thermosaccharolyticum In Complex With Coa And
Dtdp-3-Amino- Quinovose
pdb|3FSB|B Chain B, Crystal Structure Of Qdtc, The Dtdp-3-Amino-3,6-Dideoxy-D-
Glucose N-Acetyl Transferase From Thermoanaerobacterium
Thermosaccharolyticum In Complex With Coa And
Dtdp-3-Amino- Quinovose
pdb|3FSC|A Chain A, Crystal Structure Of Qdtc, The Dtdp-3-Amino-3,6-Dideoxy-D-
Glucose N-Acetyl Transferase From Thermoanaerobacterium
Thermosaccharolyticum In Complex With Coa And
Dtdp-3-Amino- Fucose
pdb|3FSC|B Chain B, Crystal Structure Of Qdtc, The Dtdp-3-Amino-3,6-Dideoxy-D-
Glucose N-Acetyl Transferase From Thermoanaerobacterium
Thermosaccharolyticum In Complex With Coa And
Dtdp-3-Amino- Fucose
Length = 273
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/183 (21%), Positives = 85/183 (46%), Gaps = 30/183 (16%)
Query: 25 LGCR-LQGNY---YFQEQLSRHRTLMNIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIW 80
+G R + G Y ++ +++++ L ++ ++ + I GD +G
Sbjct: 47 IGARSILGEYLVDFYNDRINKKHPL--------IIGENALIRTENVIYGDTIIGDNFQTG 98
Query: 81 YGCVLRGDV---NSISIGSGTNIQDN----SLVHVAKSNLAGK---------VLPTIIGD 124
+ +R + N++ IG+ ++IQ + + V++ + G+ + P ++
Sbjct: 99 HKVTIRENTKIGNNVKIGTLSDIQHHVYIGNYVNIHSNVFVGEKSIIKDFVWLFPHVVLT 158
Query: 125 NVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGN 184
N S L G T+E A + + +L G+++ + A+V AGA+V ++ +P V GN
Sbjct: 159 NDPTPPSNELLGVTIELFAVIAARSVVLPGIHINEDALVGAGAVVTKD--VPKETVVVGN 216
Query: 185 PAR 187
PAR
Sbjct: 217 PAR 219
>pdb|1OCX|A Chain A, E. Coli Maltose-O-Acetyltransferase
pdb|1OCX|B Chain B, E. Coli Maltose-O-Acetyltransferase
pdb|1OCX|C Chain C, E. Coli Maltose-O-Acetyltransferase
Length = 182
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 76/167 (45%), Gaps = 34/167 (20%)
Query: 36 QEQLSRHRTLMNIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIW--YGCVLRGDVNSIS 93
+E R + L ++F + + ++ P+ + G++ + + CV+ DV I
Sbjct: 40 EEHTLRQQILADLFGQV----TEAYIEPTFRCDYGYNIFLGNNFFANFDCVML-DVCPIR 94
Query: 94 IGSGTNIQDNSLVH--------VAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFV 145
IG + ++ VA+++ A P IG+NV +G AV++
Sbjct: 95 IGDNCMLAPGVHIYTATHPIDPVARNSGAELGKPVTIGNNVWIGGRAVIN---------- 144
Query: 146 GMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKL 192
GV + + +VA+GA+V ++ +P V GGNPAR ++KL
Sbjct: 145 -------PGVTIGDNVVVASGAVVTKD--VPDNVVVGGNPARIIKKL 182
>pdb|3HJJ|A Chain A, Crystal Structure Of Maltose O-Acetyltransferase From
Bacillus Anthracis
pdb|3HJJ|B Chain B, Crystal Structure Of Maltose O-Acetyltransferase From
Bacillus Anthracis
pdb|3HJJ|C Chain C, Crystal Structure Of Maltose O-Acetyltransferase From
Bacillus Anthracis
pdb|3IGJ|A Chain A, Crystal Structure Of Maltose O-Acetyltransferase Complexed
With Acetyl Coenzyme A From Bacillus Anthracis
pdb|3IGJ|B Chain B, Crystal Structure Of Maltose O-Acetyltransferase Complexed
With Acetyl Coenzyme A From Bacillus Anthracis
pdb|3IGJ|C Chain C, Crystal Structure Of Maltose O-Acetyltransferase Complexed
With Acetyl Coenzyme A From Bacillus Anthracis
Length = 190
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 61/133 (45%), Gaps = 28/133 (21%)
Query: 70 DVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNL------AGKVL--PTI 121
++ VG+ + CV+ DV + IG ++ A L +GK P
Sbjct: 78 NIHVGKSFFANFNCVIL-DVCEVRIGDHCXFAPGVHIYTATHPLHPVERNSGKEYGKPVK 136
Query: 122 IGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVW 181
IG+NV +VG GA + GV + +A++A+GA+V ++ +P V
Sbjct: 137 IGNNV-----------------WVGGGAIINPGVSIGDNAVIASGAVVTKD--VPNNVVV 177
Query: 182 GGNPARFLRKLTE 194
GGNPA+ ++ + E
Sbjct: 178 GGNPAKVIKTIEE 190
>pdb|4HUR|A Chain A, Crystal Structure Of Streptogramin Group A Antibiotic
Acetyltransferase Vata From Staphylococcus Aureus In
Complex With Acetyl Coenzyme A
pdb|4HUR|B Chain B, Crystal Structure Of Streptogramin Group A Antibiotic
Acetyltransferase Vata From Staphylococcus Aureus In
Complex With Acetyl Coenzyme A
pdb|4HUR|C Chain C, Crystal Structure Of Streptogramin Group A Antibiotic
Acetyltransferase Vata From Staphylococcus Aureus In
Complex With Acetyl Coenzyme A
pdb|4HUS|A Chain A, Crystal Structure Of Streptogramin Group A Antibiotic
Acetyltransferase Vata From Staphylococcus Aureus In
Complex With Virginiamycin M1
pdb|4HUS|B Chain B, Crystal Structure Of Streptogramin Group A Antibiotic
Acetyltransferase Vata From Staphylococcus Aureus In
Complex With Virginiamycin M1
pdb|4HUS|C Chain C, Crystal Structure Of Streptogramin Group A Antibiotic
Acetyltransferase Vata From Staphylococcus Aureus In
Complex With Virginiamycin M1
Length = 220
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 13/101 (12%)
Query: 139 VEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRK-----LT 193
+ ++ ++G T++ GV + A++AA A+V +N P V GGNP +F+RK +
Sbjct: 122 IGNDVWIGRDVTIMPGVKIGDGAIIAAEAVVTKNVA-PYSIV-GGNPLKFIRKRFSDGVI 179
Query: 194 EEEMAFISQSAINYSNLARVHAAENAKSFDEIEFEKLLRKK 234
EE + A+ + NL EN + E L RK+
Sbjct: 180 EEWL------ALQWWNLDMKIINENLPFIINGDIEMLKRKR 214
>pdb|4E8L|A Chain A, Crystal Structure Of Streptogramin Group A Antibiotic
Acetyltransferase Vata From Staphylococcus Aureus
pdb|4E8L|B Chain B, Crystal Structure Of Streptogramin Group A Antibiotic
Acetyltransferase Vata From Staphylococcus Aureus
pdb|4E8L|C Chain C, Crystal Structure Of Streptogramin Group A Antibiotic
Acetyltransferase Vata From Staphylococcus Aureus
Length = 219
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 13/101 (12%)
Query: 139 VEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRK-----LT 193
+ ++ ++G T++ GV + A++AA A+V +N P V GGNP +F+RK +
Sbjct: 121 IGNDVWIGRDVTIMPGVKIGDGAIIAAEAVVTKNVA-PYSIV-GGNPLKFIRKRFSDGVI 178
Query: 194 EEEMAFISQSAINYSNLARVHAAENAKSFDEIEFEKLLRKK 234
EE + A+ + NL EN + E L RK+
Sbjct: 179 EEWL------ALQWWNLDMKIINENLPFIINGDIEMLKRKR 213
>pdb|2IC7|A Chain A, Crystal Structure Of Maltose Transacetylase From
Geobacillus Kaustophilus
pdb|2IC7|B Chain B, Crystal Structure Of Maltose Transacetylase From
Geobacillus Kaustophilus
pdb|2IC7|C Chain C, Crystal Structure Of Maltose Transacetylase From
Geobacillus Kaustophilus
pdb|2P2O|A Chain A, Crystal Structure Of Maltose Transacetylase From
Geobacillus Kaustophilus P2(1) Crystal Form
pdb|2P2O|B Chain B, Crystal Structure Of Maltose Transacetylase From
Geobacillus Kaustophilus P2(1) Crystal Form
pdb|2P2O|C Chain C, Crystal Structure Of Maltose Transacetylase From
Geobacillus Kaustophilus P2(1) Crystal Form
pdb|2P2O|D Chain D, Crystal Structure Of Maltose Transacetylase From
Geobacillus Kaustophilus P2(1) Crystal Form
pdb|2P2O|E Chain E, Crystal Structure Of Maltose Transacetylase From
Geobacillus Kaustophilus P2(1) Crystal Form
pdb|2P2O|F Chain F, Crystal Structure Of Maltose Transacetylase From
Geobacillus Kaustophilus P2(1) Crystal Form
Length = 185
Score = 35.0 bits (79), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 19/74 (25%)
Query: 119 PTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCG 178
P +IG NV +G AV++ GV + +A++A+GA+V ++ +P
Sbjct: 130 PVVIGHNVWIGGRAVIN-----------------PGVTIGDNAVIASGAVVTKD--VPAN 170
Query: 179 EVWGGNPARFLRKL 192
V GGNPA+ ++ L
Sbjct: 171 AVVGGNPAKVIKWL 184
>pdb|3R8Y|A Chain A, Structure Of The Bacillus Anthracis Tetrahydropicolinate
Succinyltransferase
pdb|3R8Y|B Chain B, Structure Of The Bacillus Anthracis Tetrahydropicolinate
Succinyltransferase
pdb|3R8Y|C Chain C, Structure Of The Bacillus Anthracis Tetrahydropicolinate
Succinyltransferase
pdb|3R8Y|D Chain D, Structure Of The Bacillus Anthracis Tetrahydropicolinate
Succinyltransferase
pdb|3R8Y|E Chain E, Structure Of The Bacillus Anthracis Tetrahydropicolinate
Succinyltransferase
pdb|3R8Y|F Chain F, Structure Of The Bacillus Anthracis Tetrahydropicolinate
Succinyltransferase
Length = 240
Score = 35.0 bits (79), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 73/147 (49%), Gaps = 24/147 (16%)
Query: 61 LAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPT 120
+ P A I V++G + I + ++ ++ IG G+ I N++ L G+
Sbjct: 94 IEPGAIIRDHVEIGDNAVIMMNATI--NIGAV-IGEGSMIDMNAV-------LGGR---A 140
Query: 121 IIGDNVTVGHSAVLHG---------CTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQ 171
+G N VG AVL G VED+ +G +L+GV V K A+VAAGA+V +
Sbjct: 141 TVGKNCHVGAGAVLAGVIEPPSAKPVIVEDDVVIGANVVVLEGVTVGKGAVVAAGAVVTE 200
Query: 172 NTKIPCGEVWGGNPARFLRKLTEEEMA 198
+ +P V G PAR ++++ E+ A
Sbjct: 201 D--VPPYTVVAGTPARVIKEIDEKTKA 225
>pdb|3GVD|A Chain A, Crystal Structure Of Serine Acetyltransferase Cyse From
Yersinia Pestis
pdb|3GVD|B Chain B, Crystal Structure Of Serine Acetyltransferase Cyse From
Yersinia Pestis
pdb|3GVD|C Chain C, Crystal Structure Of Serine Acetyltransferase Cyse From
Yersinia Pestis
pdb|3GVD|D Chain D, Crystal Structure Of Serine Acetyltransferase Cyse From
Yersinia Pestis
pdb|3GVD|E Chain E, Crystal Structure Of Serine Acetyltransferase Cyse From
Yersinia Pestis
pdb|3GVD|F Chain F, Crystal Structure Of Serine Acetyltransferase Cyse From
Yersinia Pestis
pdb|3GVD|G Chain G, Crystal Structure Of Serine Acetyltransferase Cyse From
Yersinia Pestis
pdb|3GVD|H Chain H, Crystal Structure Of Serine Acetyltransferase Cyse From
Yersinia Pestis
pdb|3GVD|I Chain I, Crystal Structure Of Serine Acetyltransferase Cyse From
Yersinia Pestis
pdb|3GVD|J Chain J, Crystal Structure Of Serine Acetyltransferase Cyse From
Yersinia Pestis
pdb|3GVD|K Chain K, Crystal Structure Of Serine Acetyltransferase Cyse From
Yersinia Pestis
pdb|3GVD|L Chain L, Crystal Structure Of Serine Acetyltransferase Cyse From
Yersinia Pestis
Length = 276
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 28/48 (58%)
Query: 50 DKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSG 97
D+ P + + V + A I+G+++VGRG+ I G V+ V + + +G
Sbjct: 194 DRHPKIREGVMIGAGAKILGNIEVGRGAKIGAGSVVLQSVPAHTTAAG 241
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 139 VEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRK 191
+ + +G GA +L + V + A + AG++V Q+ +P G PAR + K
Sbjct: 199 IREGVMIGAGAKILGNIEVGRGAKIGAGSVVLQS--VPAHTTAAGVPARIVGK 249
>pdb|4EAA|A Chain A, X-Ray Crystal Structure Of The H141n Mutant Of Perosamine
N- Acetyltransferase From Caulobacter Crescentus In
Complex With Coa And Gdp-Perosamine
Length = 220
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 60/128 (46%), Gaps = 18/128 (14%)
Query: 63 PSASIIGDVQVGRGSSIWYGCVLRGD--VNSISIGSGTNIQDNSLVHVAKSNLAGKVLPT 120
PSA + V++G G ++ G + D + ++I + + DN A +L P
Sbjct: 104 PSAVVSPSVRLGEGVAVMAGVAINADSWIGDLAIINTGAVVDNDCRLGAACHLG----PA 159
Query: 121 IIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEV 180
SA+ G +V + AF+G+GA ++ GV + +V AG +V ++ +P +
Sbjct: 160 ----------SALAGGVSVGERAFLGVGARVIPGVTIGADTIVGAGGVVVRD--LPDSVL 207
Query: 181 WGGNPARF 188
G PA+
Sbjct: 208 AIGVPAKI 215
>pdb|2AQ9|A Chain A, Structure Of E. Coli Lpxa With A Bound Peptide That Is
Competitive With Acyl-Acp
pdb|2JF3|A Chain A, Nucleotide Substrate Binding By Udp-N-Acetylglucosamine
Acyltransferase
pdb|1LXA|A Chain A, Udp N-Acetylglucosamine Acyltransferase
pdb|2QIA|A Chain A, Structural Basis For The Acyl Chain Selectivity And
Mechanism Of Udp-N-Acetylglucosamine Acyltransferase
pdb|2QIV|X Chain X, Structural Basis For The Acyl Chain Selectivity And
Mechanism Of Udp-N-Acetylglucosamine Acyltransferase
Length = 262
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 55/125 (44%), Gaps = 13/125 (10%)
Query: 69 GDVQVGRGSSIWYGCVLRGDVNS----------ISIGSGTNIQDNSLVHVAKSNLAGKVL 118
G ++GR + I+ + G+VN + IG I+++ +H + + G L
Sbjct: 52 GHTKIGRDNEIYQFASI-GEVNQDLKYAGEPTRVEIGDRNRIRESVTIH--RGTVQGGGL 108
Query: 119 PTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCG 178
+ DN+ + ++ + H CTV + + ATL V V+ A++ V Q I
Sbjct: 109 TKVGSDNLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTAVHQFCIIGAH 168
Query: 179 EVWGG 183
+ GG
Sbjct: 169 VMVGG 173
>pdb|3QNZ|B Chain B, Orthorhombic Form Of Igg1 Fab Fragment (in Complex With
Antigenic Tubulin Peptide) Sharing Same Fv As Iga
pdb|3QO0|B Chain B, Monoclinic Form Of Igg1 Fab Fragment (In Complex With
Antigenic Peptide) Sharing Same Fv As Iga
pdb|3QO1|B Chain B, Monoclinic Form Of Igg1 Fab Fragment (apo Form) Sharing
Same Fv As Iga
Length = 220
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 81 YGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAG-KVLPTIIGDNVTVGHSAVLHGCTV 139
Y CV+RGDV + G GT LV V+ ++ G V P T G +A L GC V
Sbjct: 96 YYCVIRGDVYNRQWGQGT------LVTVSSASTKGPSVFPLAPSSKSTSGGTAAL-GCLV 148
Query: 140 ED 141
+D
Sbjct: 149 KD 150
>pdb|2JF2|A Chain A, Nucleotide Substrate Binding By Udp-n-acetylglucosamine
Acyltransferase
Length = 264
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 55/125 (44%), Gaps = 13/125 (10%)
Query: 69 GDVQVGRGSSIWYGCVLRGDVNS----------ISIGSGTNIQDNSLVHVAKSNLAGKVL 118
G ++GR + I+ + G+VN + IG I+++ +H + + G L
Sbjct: 54 GHTKIGRDNEIYQFASI-GEVNQDLKYAGEPTRVEIGDRNRIRESVTIH--RGTVQGGGL 110
Query: 119 PTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCG 178
+ DN+ + ++ + H CTV + + ATL V V+ A++ V Q I
Sbjct: 111 TKVGSDNLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTAVHQFCIIGAH 170
Query: 179 EVWGG 183
+ GG
Sbjct: 171 VMVGG 175
>pdb|1J2Z|A Chain A, Crystal Structure Of Udp-n-acetylglucosamine
Acyltransferase
Length = 270
Score = 31.2 bits (69), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 29/142 (20%), Positives = 61/142 (42%), Gaps = 13/142 (9%)
Query: 55 VNKDVFLAPSASIIGDVQVGRGSSIWYGCVL---------RGDVNSISIGSGTNIQDNSL 105
+++ V L + ++ G VG+ + I+ VL +G+ + + IG I++ +
Sbjct: 34 LDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGTQPQDLKYKGEYSELIIGEDNLIREFCM 93
Query: 106 VHVAKSNLAGKVLPTIIGD-NVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVA 164
++ G + T+IGD N+ + + V H C + + G TL + + + +
Sbjct: 94 INPGTE---GGIKKTLIGDKNLLMAYVHVAHDCVIGSHCILANGVTLAGHIEIGDYVNIG 150
Query: 165 AGALVRQNTKIPCGEVWGGNPA 186
+ Q +I G + G A
Sbjct: 151 GLTAIHQFVRIAKGCMIAGKSA 172
>pdb|1T3D|A Chain A, Crystal Structure Of Serine Acetyltransferase From E.Coli
At 2.2a
pdb|1T3D|B Chain B, Crystal Structure Of Serine Acetyltransferase From E.Coli
At 2.2a
pdb|1T3D|C Chain C, Crystal Structure Of Serine Acetyltransferase From E.Coli
At 2.2a
Length = 289
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 50 DKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSG 97
D+ P + + V + A I+G+++VGRG+ I G V+ V + +G
Sbjct: 207 DRHPKIREGVXIGAGAKILGNIEVGRGAKIGAGSVVLQPVPPHTTAAG 254
>pdb|4EA7|A Chain A, X-Ray Crystal Structure Of Perb From Caulobacter
Crescentus In Complex With Coa And Gdp-Perosamine At 1.0
Angstrom Resolution
pdb|4EA8|A Chain A, X-Ray Crystal Structure Of Perb From Caulobacter
Crescentus In Complex With Coenzyme A And
Gdp-N-Acetylperosamine At 1 Angstrom Resolution
pdb|4EA9|A Chain A, X-Ray Structure Of Gdp-Perosamine N-Acetyltransferase In
Complex With Transition State Analog At 0.9 Angstrom
Resolution
Length = 220
Score = 31.2 bits (69), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 59/127 (46%), Gaps = 16/127 (12%)
Query: 63 PSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLV-HVAKSNLAGKVLPTI 121
PSA + V++G G ++ G + D IG I ++V H + A + P
Sbjct: 104 PSAVVSPSVRLGEGVAVMAGVAINADS---WIGDLAIINTGAVVDHDCRLGAACHLGPA- 159
Query: 122 IGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVW 181
SA+ G +V + AF+G+GA ++ GV + +V AG +V ++ +P +
Sbjct: 160 ---------SALAGGVSVGERAFLGVGARVIPGVTIGADTIVGAGGVVVRD--LPDSVLA 208
Query: 182 GGNPARF 188
G PA+
Sbjct: 209 IGVPAKI 215
>pdb|4EAB|A Chain A, X-Ray Crystal Structure Of The H141a Mutant Of
Gdp-Perosamine N-Acetyl Transferase From Caulobacter
Crescentus In Complex With Coa And Gdp- Perosamine
Length = 220
Score = 30.8 bits (68), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 131 SAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARF 188
SA+ G +V + AF+G+GA ++ GV + +V AG +V ++ +P + G PA+
Sbjct: 160 SALAGGVSVGERAFLGVGARVIPGVTIGADTIVGAGGVVVRD--LPDSVLAIGVPAKI 215
>pdb|1XAT|A Chain A, Structure Of The Hexapeptide Xenobiotic Acetyltransferase
From Pseudomonas Aeruginosa
pdb|2XAT|A Chain A, Complex Of The Hexapeptide Xenobiotic Acetyltransferase
With Chloramphenicol And Desulfo-Coenzyme A
Length = 212
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 142 EAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRK 191
E ++G A + GV V A++ + ALV + + P V GGNPAR +RK
Sbjct: 116 EVWIGTEAMFMPGVRVGHGAIIGSRALVTGDVE-PYAIV-GGNPARTIRK 163
>pdb|3MC4|A Chain A, Crystal Structure Of WwRSP5WWP DOMAIN: BACTERIAL
TRANSFERASE Hexapeptide Repeat: Serine
O-Acetyltransferase From Brucella Melitensis
pdb|3MC4|B Chain B, Crystal Structure Of WwRSP5WWP DOMAIN: BACTERIAL
TRANSFERASE Hexapeptide Repeat: Serine
O-Acetyltransferase From Brucella Melitensis
Length = 287
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 50 DKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVL 85
D+ P + + V + A I+G++QVG+ S I G V+
Sbjct: 214 DRHPKIRQGVLIGAGAKILGNIQVGQXSKIAAGSVV 249
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 11/78 (14%)
Query: 121 IIGDNVTVGHSAVLHGC---------TVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQ 171
++ DNV++ H L G + +G GA +L + V + + +AAG++V +
Sbjct: 192 VVEDNVSILHGVTLGGTGKSSGDRHPKIRQGVLIGAGAKILGNIQVGQXSKIAAGSVVLK 251
Query: 172 NTKIPCGEVWGGNPARFL 189
+ +P G PAR +
Sbjct: 252 S--VPHNVTVAGVPARII 267
>pdb|3T57|A Chain A, Activity And Crystal Structure Of Arabidopsis
Udp-N-Acetylglucosamine Acyltransferase
Length = 305
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 29/115 (25%)
Query: 56 NKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVH-------- 107
+ +V + PSA + + +G+G S+ C + +S+ +G+G + +S V
Sbjct: 5 DSEVLIHPSAVVHPNAVIGKGVSVGPYCTIG---SSVKLGNGCKLYPSSHVFGNTELGES 61
Query: 108 --VAKSNLAGKVLP--TIIGDNVTVGHSAVL----------HGCTVEDEAFVGMG 148
+ + G LP T IG N +GH AV+ HG DE F+ +G
Sbjct: 62 CVLMTGAVVGDELPGYTFIGCNNIIGHHAVVGVKCQDLKYKHG----DECFLCIG 112
>pdb|3CJ8|A Chain A, Crystal Structure Of
2,3,4,5-Tetrahydropyridine-2-Carboxylate N-
Succinyltransferase From Enterococcus Faecalis V583
pdb|3CJ8|B Chain B, Crystal Structure Of
2,3,4,5-Tetrahydropyridine-2-Carboxylate N-
Succinyltransferase From Enterococcus Faecalis V583
pdb|3CJ8|C Chain C, Crystal Structure Of
2,3,4,5-Tetrahydropyridine-2-Carboxylate N-
Succinyltransferase From Enterococcus Faecalis V583
Length = 236
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 74/144 (51%), Gaps = 24/144 (16%)
Query: 61 LAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPT 120
+ P A I V++G + I G +L ++ ++ +G+GT I ++ L G+
Sbjct: 94 IEPGALIREKVEIGDQAVIXXGAIL--NIGAV-VGAGTXIDXGAV-------LGGR---A 140
Query: 121 IIGDNVTVGHSAVLHG---------CTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQ 171
+G + +G VL G +E+E +G A +L+GV V + A+VAAGA+V +
Sbjct: 141 TVGKHCHIGAGTVLAGVIEPPSAAPVVIENEVVIGANAVVLEGVRVGEGAVVAAGAVVVE 200
Query: 172 NTKIPCGEVWGGNPARFLRKLTEE 195
+ +P V G PA+ ++++ ++
Sbjct: 201 D--VPAHTVVAGVPAKVIKQIDDK 222
>pdb|4AA7|A Chain A, E.Coli Glmu In Complex With An Antibacterial Inhibitor
pdb|4AA7|B Chain B, E.Coli Glmu In Complex With An Antibacterial Inhibitor
Length = 231
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 8/59 (13%)
Query: 122 IGDNVTVGHSAVL--------HGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQN 172
IGDNV +G + + D+ FVG L+ V V K A +AAG V +N
Sbjct: 147 IGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIAAGTTVTRN 205
>pdb|3TWD|A Chain A, Glmuc1 In Complex With An Antibacterial Inhibitor
pdb|3TWD|B Chain B, Glmuc1 In Complex With An Antibacterial Inhibitor
Length = 222
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 8/59 (13%)
Query: 122 IGDNVTVGHSAVL--------HGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQN 172
IGDNV +G + + D+ FVG L+ V V K A +AAG V +N
Sbjct: 141 IGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIAAGTTVTRN 199
>pdb|1HV9|A Chain A, Structure Of E. Coli Glmu: Analysis Of Pyrophosphorylase
And Acetyltransferase Active Sites
pdb|1HV9|B Chain B, Structure Of E. Coli Glmu: Analysis Of Pyrophosphorylase
And Acetyltransferase Active Sites
pdb|2OI5|A Chain A, E. Coli Glmu- Complex With Udp-Glcnac And Acetyl-Coa
pdb|2OI5|B Chain B, E. Coli Glmu- Complex With Udp-Glcnac And Acetyl-Coa
pdb|2OI6|A Chain A, E. Coli Glmu- Complex With Udp-Glcnac, Coa And Glcn-1-Po4
pdb|2OI6|B Chain B, E. Coli Glmu- Complex With Udp-Glcnac, Coa And Glcn-1-Po4
pdb|2OI7|A Chain A, E. Coli Glmu- Complex With Udp-Glcnac, Desulpho-Coa And
Glcnac-1-Po4
pdb|2OI7|B Chain B, E. Coli Glmu- Complex With Udp-Glcnac, Desulpho-Coa And
Glcnac-1-Po4
Length = 456
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 8/59 (13%)
Query: 122 IGDNVTVGHSAVL--------HGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQN 172
IGDNV +G + + D+ FVG L+ V V K A +AAG V +N
Sbjct: 372 IGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIAAGTTVTRN 430
>pdb|3TV0|A Chain A, Structure Of Dynactin P27 Subunit
pdb|3TV0|B Chain B, Structure Of Dynactin P27 Subunit
Length = 194
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 73/181 (40%), Gaps = 33/181 (18%)
Query: 57 KDVFLAPSA------SIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLV---- 106
K V +AP A I GDV +G + I + + I IG G I++ +L+
Sbjct: 11 KSVKIAPGAVVCVESEIRGDVTIGPRTVIHPKARIIAEAGPIVIGEGNLIEEQALIINAY 70
Query: 107 --HVAKSNLAGKVLPTIIGDN----VTVGHSAVLHG--CTVEDEAFVGMGATLLDGVYVE 158
++ + P IIG N V A+ G +E +A+VG L G +
Sbjct: 71 PDNITPDTEDPEPKPMIIGTNNVFEVGCYSQAMKMGDNNVIESKAYVGRNVILTSGCIIG 130
Query: 159 KHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEE-------EMAFISQSAINYSNLA 211
+ ++ +NT I +G A LR++ E ++ F+ + NY +L
Sbjct: 131 ACCNLNTFEVIPENTVI-----YG---ADCLRRVQTERPQPQTLQLDFLMKILPNYHHLK 182
Query: 212 R 212
+
Sbjct: 183 K 183
>pdb|3KRT|A Chain A, Crystal Structure Of Putative Crotonyl Coa Reductase From
Streptomyces Coelicolor A3(2)
pdb|3KRT|B Chain B, Crystal Structure Of Putative Crotonyl Coa Reductase From
Streptomyces Coelicolor A3(2)
pdb|3KRT|C Chain C, Crystal Structure Of Putative Crotonyl Coa Reductase From
Streptomyces Coelicolor A3(2)
pdb|3KRT|D Chain D, Crystal Structure Of Putative Crotonyl Coa Reductase From
Streptomyces Coelicolor A3(2)
Length = 456
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 107 HVAKSNLAGKVLPTIIGDNV-TVGHSAVLHGCTVEDEAFVGMGATLLDGV-----YVEKH 160
HV S+LAG VL T G N G V H +VE E+ G T+LD +
Sbjct: 119 HVIGSDLAGVVLRTGPGVNAWQAGDEVVAHCLSVELESSDGHNDTMLDPEQRIWGFETNF 178
Query: 161 AMVAAGALVRQNTKIP 176
+A ALV+ N +P
Sbjct: 179 GGLAEIALVKSNQLMP 194
>pdb|4E6T|A Chain A, Structure Of Lpxa From Acinetobacter Baumannii At 1.8a
Resolution (P212121 Form)
pdb|4E6T|B Chain B, Structure Of Lpxa From Acinetobacter Baumannii At 1.8a
Resolution (P212121 Form)
pdb|4E6T|C Chain C, Structure Of Lpxa From Acinetobacter Baumannii At 1.8a
Resolution (P212121 Form)
Length = 294
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 52/123 (42%), Gaps = 8/123 (6%)
Query: 32 NYYFQEQLSRHRTLMN---IFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGD 88
N YFQ + + L++ I D + V+ DV + P I V +G G+ + V+ G
Sbjct: 25 NLYFQGAGTSNHDLIHSTAIIDPSAVIASDVQIGPYCIIGPQVTIGAGTKLHSHVVVGGF 84
Query: 89 VNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTI--IGDNVTVGHSAVLHGCTVEDEAFVG 146
IG I + V +L K T IG+N + LH TV+D A
Sbjct: 85 TR---IGQNNEIFQFASVGEVCQDLKYKGEETWLEIGNNNLIREHCSLHRGTVQDNALTK 141
Query: 147 MGA 149
+G+
Sbjct: 142 IGS 144
>pdb|3JQY|B Chain B, Crystal Strucutre Of The Polysia Specific
Acetyltransferase Neuo
pdb|3JQY|A Chain A, Crystal Strucutre Of The Polysia Specific
Acetyltransferase Neuo
pdb|3JQY|C Chain C, Crystal Strucutre Of The Polysia Specific
Acetyltransferase Neuo
Length = 252
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 51 KAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSG 97
K +++ V++ + SI+ V VG GS I YG ++ DV S+ +G
Sbjct: 162 KDIIISSYVWVGRNVSIMKGVSVGSGSVIGYGSIVTKDVPSMCAAAG 208
>pdb|3NEL|A Chain A, Aspartyl-Trna Synthetase Complexed With Aspartic Acid
pdb|3NEL|B Chain B, Aspartyl-Trna Synthetase Complexed With Aspartic Acid
pdb|3NEM|A Chain A, Aspartyl-Trna Synthetase Complexed With Aspartyl Adenylate
pdb|3NEM|B Chain B, Aspartyl-Trna Synthetase Complexed With Aspartyl Adenylate
pdb|3NEN|A Chain A, Unliganded Aspartyl-Trna Synthetase From Thermococcus
Kodakarensis
pdb|3NEN|B Chain B, Unliganded Aspartyl-Trna Synthetase From Thermococcus
Kodakarensis
Length = 438
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 53/142 (37%), Gaps = 22/142 (15%)
Query: 119 PTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAG--------ALVR 170
P II T G + + E++AF+ L K M+A+G + R
Sbjct: 162 PKIIA-TATEGGTELFPMKYFEEDAFLAQSPQLY------KQIMMASGLDRVYEIAPIFR 214
Query: 171 ---QNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINYSNLARVHAAENAKSFDEIEF 227
NT E W + + EE M+F+ + + N R H NAK D + F
Sbjct: 215 AEEHNTTRHLNEAWSIDSEMAFIEDEEEVMSFLERLVAHAINYVREH---NAKELDILNF 271
Query: 228 EKLLRKKFARRDEEYDSMLGVV 249
E L K YD L ++
Sbjct: 272 E-LEEPKLPFPRVSYDKALEIL 292
>pdb|3F1X|A Chain A, Three Dimensional Structure Of The Serine
Acetyltransferase From Bacteroides Vulgatus, Northeast
Structural Genomics Consortium Target Bvr62
Length = 310
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 9/29 (31%), Positives = 21/29 (72%)
Query: 51 KAPVVNKDVFLAPSASIIGDVQVGRGSSI 79
+ P++ DV + +A+I+G V +G+G+++
Sbjct: 250 RHPILEDDVIVYSNATILGRVTIGKGATV 278
>pdb|4EGG|A Chain A, Computationally Designed Self-Assembling Tetrahedron
Protein, T310
pdb|4EGG|B Chain B, Computationally Designed Self-Assembling Tetrahedron
Protein, T310
pdb|4EGG|C Chain C, Computationally Designed Self-Assembling Tetrahedron
Protein, T310
pdb|4EGG|D Chain D, Computationally Designed Self-Assembling Tetrahedron
Protein, T310
pdb|4EGG|E Chain E, Computationally Designed Self-Assembling Tetrahedron
Protein, T310
pdb|4EGG|F Chain F, Computationally Designed Self-Assembling Tetrahedron
Protein, T310
Length = 207
Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 54/135 (40%), Gaps = 30/135 (22%)
Query: 70 DVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLA--------GKVLPTI 121
+V++G+ + C D I+IG I N + A L K P
Sbjct: 74 NVKLGKNVYVNTNCYFM-DGGQITIGDNVFIGPNCGFYTATHPLNFHHRNEGFEKAGPIH 132
Query: 122 IGDNVTVG-HSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEV 180
IG N G H AVL G T+ + + +G AG++V ++ IP +
Sbjct: 133 IGSNTWFGGHVAVLPGVTIGEGSVIG------------------AGSVVTKD--IPPHSL 172
Query: 181 WGGNPARFLRKLTEE 195
GNP + +RK+ +
Sbjct: 173 AVGNPCKVVRKIDND 187
>pdb|3V4E|A Chain A, Crystal Structure Of The Galactoside O-Acetyltransferase
In Complex With Coa
pdb|3V4E|B Chain B, Crystal Structure Of The Galactoside O-Acetyltransferase
In Complex With Coa
pdb|3V4E|C Chain C, Crystal Structure Of The Galactoside O-Acetyltransferase
In Complex With Coa
Length = 202
Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 54/135 (40%), Gaps = 30/135 (22%)
Query: 70 DVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLA--------GKVLPTI 121
+V++G+ + C D I+IG I N + A L K P
Sbjct: 77 NVKLGKNVYVNTNCYFM-DGGQITIGDNVFIGPNCGFYTATHPLNFHHRNEGFEKAGPIH 135
Query: 122 IGDNVTVG-HSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEV 180
IG N G H AVL G T+ + + +G AG++V ++ IP +
Sbjct: 136 IGSNTWFGGHVAVLPGVTIGEGSVIG------------------AGSVVTKD--IPPHSL 175
Query: 181 WGGNPARFLRKLTEE 195
GNP + +RK+ +
Sbjct: 176 AVGNPCKVVRKIDND 190
>pdb|3FTT|A Chain A, Crystal Structure Of The Galactoside O-Acetyltransferase
From Staphylococcus Aureus
Length = 199
Score = 27.3 bits (59), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 54/135 (40%), Gaps = 30/135 (22%)
Query: 70 DVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLA--------GKVLPTI 121
+V++G+ + C D I+IG I N + A L K P
Sbjct: 74 NVKLGKNVYVNTNCYFX-DGGQITIGDNVFIGPNCGFYTATHPLNFHHRNEGFEKAGPIH 132
Query: 122 IGDNVTVG-HSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEV 180
IG N G H AVL G T+ + + +G AG++V ++ IP +
Sbjct: 133 IGSNTWFGGHVAVLPGVTIGEGSVIG------------------AGSVVTKD--IPPHSL 172
Query: 181 WGGNPARFLRKLTEE 195
GNP + +RK+ +
Sbjct: 173 AVGNPCKVVRKIDND 187
>pdb|4DCL|A Chain A, Computationally Designed Self-Assembling Tetrahedron
Protein, T308, Crystallized In Space Group F23
Length = 207
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 54/135 (40%), Gaps = 30/135 (22%)
Query: 70 DVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLA--------GKVLPTI 121
+V++G+ + C D I+IG I N + A L K P
Sbjct: 74 NVKLGKNVYVNTNCYFM-DGGQITIGDNVFIGPNCGFYTATHPLNFHHRNEGFEKAGPIH 132
Query: 122 IGDNVTVG-HSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEV 180
IG N G H AVL G T+ + + +G AG++V ++ IP +
Sbjct: 133 IGSNTWFGGHVAVLPGVTIGEGSVIG------------------AGSVVTKD--IPPHSL 172
Query: 181 WGGNPARFLRKLTEE 195
GNP + +RK+ +
Sbjct: 173 AVGNPCKVVRKIDND 187
>pdb|2GGO|A Chain A, Crystal Structure Of Glucose-1-Phosphate
Thymidylyltransferase From Sulfolobus Tokodaii
pdb|2GGQ|A Chain A, Complex Of Hypothetical Glucose-1-Phosphate
Thymidylyltransferase From Sulfolobus Tokodaii
Length = 401
Score = 27.3 bits (59), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 39/201 (19%), Positives = 81/201 (40%), Gaps = 38/201 (18%)
Query: 6 KAIYSVGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPV-----VNKDVF 60
K I G+W+ + G+ + + N + + L + L N+ D + + +D
Sbjct: 198 KVIEYEGYWM-DIGKPWNIIDV----NKWALDNLVFSQNLGNVEDNVKIKGKVIIEEDAE 252
Query: 61 LAPSASIIGDVQVGRGSSIWYGCVLRGD---VNSISIGSGTNIQDNSLVHVAKSNLAGKV 117
+ I G V +G+GS I LR V IG+ ++++ ++ +K V
Sbjct: 253 IKSGTYIEGPVYIGKGSEIGPNSYLRPYTILVEKNKIGASVEVKESVIMEGSKIPHLSYV 312
Query: 118 LPTIIGDNVTVGHSAVLHGCTVEDE-------------------AFVG------MGATLL 152
++I ++V G ++ +++ AF+G + T+L
Sbjct: 313 GDSVIAEDVNFGAGTLIANLRFDEKEVKVNVKGKRISSGRRKLGAFIGGHVRTGINVTIL 372
Query: 153 DGVYVEKHAMVAAGALVRQNT 173
GV + +A + GA+V ++
Sbjct: 373 PGVKIGAYARIYPGAVVNRDV 393
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,925,348
Number of Sequences: 62578
Number of extensions: 319198
Number of successful extensions: 825
Number of sequences better than 100.0: 79
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 706
Number of HSP's gapped (non-prelim): 107
length of query: 271
length of database: 14,973,337
effective HSP length: 97
effective length of query: 174
effective length of database: 8,903,271
effective search space: 1549169154
effective search space used: 1549169154
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)