Query 024153
Match_columns 271
No_of_seqs 306 out of 2733
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 02:28:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024153.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024153hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02296 carbonate dehydratase 100.0 1.3E-46 2.8E-51 325.8 28.6 269 1-269 1-269 (269)
2 COG0663 PaaY Carbonic anhydras 100.0 2.4E-33 5.3E-38 224.1 18.8 165 48-218 7-171 (176)
3 PLN02472 uncharacterized prote 100.0 1.6E-28 3.5E-33 210.3 23.4 187 32-218 39-225 (246)
4 PRK13627 carnitine operon prot 100.0 8.5E-29 1.9E-33 205.9 21.0 164 46-215 4-167 (196)
5 TIGR02287 PaaY phenylacetic ac 100.0 1E-28 2.2E-33 204.8 18.1 163 47-215 3-165 (192)
6 COG1043 LpxA Acyl-[acyl carrie 100.0 4.7E-29 1E-33 206.3 6.5 205 48-258 29-243 (260)
7 cd04745 LbH_paaY_like paaY-lik 99.9 1E-25 2.2E-30 181.5 19.7 153 54-212 2-154 (155)
8 PRK12461 UDP-N-acetylglucosami 99.9 3.5E-27 7.5E-32 204.0 11.2 155 47-203 24-211 (255)
9 cd04650 LbH_FBP Ferripyochelin 99.9 6.8E-25 1.5E-29 176.4 20.0 152 54-211 2-153 (154)
10 PRK12461 UDP-N-acetylglucosami 99.9 3.4E-24 7.3E-29 185.4 19.5 208 47-260 6-240 (255)
11 cd04645 LbH_gamma_CA_like Gamm 99.9 6.4E-24 1.4E-28 170.6 18.8 151 55-211 2-152 (153)
12 PRK05289 UDP-N-acetylglucosami 99.9 2.3E-25 5E-30 193.9 9.8 155 47-203 27-215 (262)
13 COG1043 LpxA Acyl-[acyl carrie 99.9 2.1E-24 4.7E-29 178.7 14.7 149 49-212 48-222 (260)
14 PRK05289 UDP-N-acetylglucosami 99.9 2.7E-23 5.9E-28 180.9 19.4 203 46-254 8-238 (262)
15 cd04646 LbH_Dynactin_6 Dynacti 99.9 5E-23 1.1E-27 167.2 19.2 136 54-189 1-136 (164)
16 cd03359 LbH_Dynactin_5 Dynacti 99.9 1.3E-22 2.7E-27 164.4 18.1 153 55-207 4-160 (161)
17 TIGR01852 lipid_A_lpxA acyl-[a 99.9 1.1E-22 2.4E-27 176.6 18.0 155 46-202 22-210 (254)
18 cd03351 LbH_UDP-GlcNAc_AT UDP- 99.9 2.8E-23 6.1E-28 180.3 9.5 141 47-189 24-189 (254)
19 TIGR03532 DapD_Ac 2,3,4,5-tetr 99.9 9.3E-22 2E-26 167.8 15.8 128 55-197 83-219 (231)
20 PRK09527 lacA galactoside O-ac 99.9 1.7E-21 3.7E-26 162.5 16.9 132 54-198 57-191 (203)
21 TIGR03308 phn_thr-fam phosphon 99.9 1.7E-21 3.7E-26 163.4 15.6 86 135-224 107-193 (204)
22 TIGR01852 lipid_A_lpxA acyl-[a 99.9 3.4E-22 7.3E-27 173.5 10.4 149 47-199 5-181 (254)
23 cd03351 LbH_UDP-GlcNAc_AT UDP- 99.9 2.8E-21 6.1E-26 167.7 16.2 147 47-197 18-180 (254)
24 COG1044 LpxD UDP-3-O-[3-hydrox 99.9 6.6E-21 1.4E-25 166.4 16.7 146 47-196 124-301 (338)
25 TIGR01853 lipid_A_lpxD UDP-3-O 99.9 2.6E-21 5.7E-26 173.0 12.3 52 137-190 254-305 (324)
26 TIGR01853 lipid_A_lpxD UDP-3-O 99.9 7.4E-21 1.6E-25 170.1 15.2 145 50-198 119-296 (324)
27 cd03352 LbH_LpxD UDP-3-O-acyl- 99.9 9.6E-21 2.1E-25 159.2 14.9 139 49-192 16-204 (205)
28 PRK00892 lpxD UDP-3-O-[3-hydro 99.9 5.7E-21 1.2E-25 172.7 14.4 140 51-194 129-300 (343)
29 cd00710 LbH_gamma_CA Gamma car 99.8 2E-19 4.4E-24 146.5 19.5 133 52-193 2-136 (167)
30 PRK00892 lpxD UDP-3-O-[3-hydro 99.8 6.9E-20 1.5E-24 165.6 17.7 144 47-192 143-316 (343)
31 PRK10502 putative acyl transfe 99.8 2.2E-19 4.7E-24 148.3 16.8 132 44-192 45-178 (182)
32 COG1044 LpxD UDP-3-O-[3-hydrox 99.8 2.1E-19 4.5E-24 157.0 14.9 145 46-192 141-314 (338)
33 PRK10092 maltose O-acetyltrans 99.8 8.6E-19 1.9E-23 144.4 17.0 123 57-192 58-183 (183)
34 cd03358 LbH_WxcM_N_like WcxM-l 99.8 5.9E-19 1.3E-23 135.5 12.8 119 55-190 1-119 (119)
35 PRK09677 putative lipopolysacc 99.8 5.5E-19 1.2E-23 147.1 13.6 145 48-198 39-190 (192)
36 cd03357 LbH_MAT_GAT Maltose O- 99.8 3.3E-19 7.2E-24 145.5 11.6 122 55-189 45-169 (169)
37 cd03350 LbH_THP_succinylT 2,3, 99.8 2.5E-18 5.4E-23 135.9 14.5 129 47-185 8-138 (139)
38 cd03353 LbH_GlmU_C N-acetyl-gl 99.8 3.7E-18 8.1E-23 142.2 15.5 135 49-185 12-191 (193)
39 cd03350 LbH_THP_succinylT 2,3, 99.8 4.8E-18 1E-22 134.3 13.6 120 59-195 2-130 (139)
40 TIGR00965 dapD 2,3,4,5-tetrahy 99.8 6.8E-18 1.5E-22 144.9 14.5 113 56-182 98-232 (269)
41 TIGR03570 NeuD_NnaD sugar O-ac 99.8 1E-17 2.2E-22 139.7 14.3 115 57-186 86-201 (201)
42 cd05636 LbH_G1P_TT_C_like Puta 99.8 2.6E-17 5.7E-22 133.5 16.3 121 48-182 13-157 (163)
43 cd03360 LbH_AT_putative Putati 99.8 1.3E-17 2.8E-22 137.9 14.1 115 56-185 82-197 (197)
44 cd03349 LbH_XAT Xenobiotic acy 99.8 1.6E-17 3.5E-22 132.0 13.6 128 71-202 2-138 (145)
45 cd03352 LbH_LpxD UDP-3-O-acyl- 99.8 2.3E-17 4.9E-22 138.7 15.3 61 136-197 132-192 (205)
46 TIGR01173 glmU UDP-N-acetylglu 99.8 1.4E-17 3.1E-22 155.6 14.6 142 49-192 258-445 (451)
47 cd05825 LbH_wcaF_like wcaF-lik 99.7 3.4E-17 7.3E-22 123.7 12.6 105 70-189 3-107 (107)
48 COG1207 GlmU N-acetylglucosami 99.7 2.3E-17 5.1E-22 147.5 12.1 135 48-184 264-443 (460)
49 PRK14353 glmU bifunctional N-a 99.7 8.9E-18 1.9E-22 157.0 9.9 134 51-190 267-432 (446)
50 PRK14357 glmU bifunctional N-a 99.7 4.7E-17 1E-21 152.2 14.6 141 48-190 251-435 (448)
51 PRK14352 glmU bifunctional N-a 99.7 6.4E-17 1.4E-21 152.7 15.5 145 48-194 267-456 (482)
52 KOG3121 Dynactin, subunit p25 99.7 3.4E-17 7.4E-22 125.2 10.6 140 70-209 33-174 (184)
53 COG0110 WbbJ Acetyltransferase 99.7 6.5E-17 1.4E-21 134.2 13.0 132 55-197 49-183 (190)
54 PRK11132 cysE serine acetyltra 99.7 6E-17 1.3E-21 140.3 12.3 86 92-192 162-247 (273)
55 PRK11830 dapD 2,3,4,5-tetrahyd 99.7 8.5E-17 1.8E-21 139.3 12.9 79 119-197 150-262 (272)
56 PRK09451 glmU bifunctional N-a 99.7 1.3E-16 2.9E-21 149.5 15.1 138 53-192 266-449 (456)
57 PRK14355 glmU bifunctional N-a 99.7 2.3E-16 4.9E-21 148.1 15.6 135 48-188 264-447 (459)
58 PRK14360 glmU bifunctional N-a 99.7 1.2E-16 2.5E-21 149.6 13.0 135 51-190 279-442 (450)
59 PLN02694 serine O-acetyltransf 99.7 1.4E-16 3.1E-21 138.1 12.2 85 92-191 181-265 (294)
60 PRK14353 glmU bifunctional N-a 99.7 4.4E-16 9.5E-21 145.6 15.0 38 118-155 379-417 (446)
61 PLN02739 serine acetyltransfer 99.7 6.3E-16 1.4E-20 136.6 14.0 57 136-194 257-313 (355)
62 PRK14354 glmU bifunctional N-a 99.7 8.4E-16 1.8E-20 144.2 15.2 139 48-188 261-443 (458)
63 PRK14359 glmU bifunctional N-a 99.7 9E-16 2E-20 142.8 14.4 74 117-192 340-422 (430)
64 cd04646 LbH_Dynactin_6 Dynacti 99.7 2.1E-15 4.5E-20 122.4 14.3 114 48-172 13-137 (164)
65 cd05636 LbH_G1P_TT_C_like Puta 99.7 1.6E-15 3.4E-20 123.1 13.6 106 49-169 32-162 (163)
66 PRK14358 glmU bifunctional N-a 99.7 1.4E-15 3E-20 143.6 15.0 53 49-105 267-319 (481)
67 COG1045 CysE Serine acetyltran 99.7 6.4E-16 1.4E-20 125.4 10.6 53 137-191 120-172 (194)
68 PRK14359 glmU bifunctional N-a 99.7 5.2E-16 1.1E-20 144.4 11.1 95 92-198 299-410 (430)
69 TIGR01172 cysE serine O-acetyl 99.7 1.4E-15 2.9E-20 123.3 12.1 51 135-187 112-162 (162)
70 cd04647 LbH_MAT_like Maltose O 99.7 1.8E-15 3.8E-20 114.1 12.0 108 71-189 2-109 (109)
71 cd00710 LbH_gamma_CA Gamma car 99.7 4E-15 8.7E-20 121.2 14.8 143 49-213 17-164 (167)
72 cd04649 LbH_THP_succinylT_puta 99.6 1.7E-15 3.7E-20 118.4 11.4 100 59-175 2-110 (147)
73 PRK14360 glmU bifunctional N-a 99.6 2.6E-15 5.6E-20 140.6 13.1 139 49-198 259-433 (450)
74 PLN02357 serine acetyltransfer 99.6 2.7E-15 5.8E-20 133.6 12.2 56 135-192 277-332 (360)
75 KOG4750 Serine O-acetyltransfe 99.6 7.1E-16 1.5E-20 126.7 7.5 120 53-194 135-256 (269)
76 PRK10191 putative acyl transfe 99.6 4.2E-15 9.1E-20 117.8 11.7 52 136-189 92-143 (146)
77 COG0663 PaaY Carbonic anhydras 99.6 4.2E-15 9E-20 119.4 11.8 107 71-189 12-123 (176)
78 PLN02296 carbonate dehydratase 99.6 2.1E-14 4.6E-19 124.8 16.2 116 70-197 52-180 (269)
79 PRK13627 carnitine operon prot 99.6 5E-15 1.1E-19 123.3 11.1 115 71-197 11-132 (196)
80 cd03353 LbH_GlmU_C N-acetyl-gl 99.6 1.4E-14 3.1E-19 120.6 13.8 146 51-197 8-186 (193)
81 PRK14356 glmU bifunctional N-a 99.6 1.3E-14 2.8E-19 136.1 15.0 133 51-185 268-445 (456)
82 KOG4042 Dynactin subunit p27/W 99.6 3.1E-15 6.7E-20 115.4 8.5 161 51-211 7-175 (190)
83 PRK14356 glmU bifunctional N-a 99.6 1.6E-14 3.6E-19 135.4 13.5 146 51-197 262-440 (456)
84 COG2171 DapD Tetrahydrodipicol 99.6 1.5E-14 3.2E-19 122.6 10.9 107 56-175 106-221 (271)
85 TIGR03532 DapD_Ac 2,3,4,5-tetr 99.6 4.7E-15 1E-19 126.6 8.0 113 73-199 83-204 (231)
86 PRK14358 glmU bifunctional N-a 99.6 3.7E-14 8E-19 133.8 14.8 64 118-183 373-444 (481)
87 KOG1461 Translation initiation 99.6 1.1E-14 2.4E-19 135.4 10.4 133 20-172 288-420 (673)
88 PRK14355 glmU bifunctional N-a 99.6 3.2E-14 6.9E-19 133.6 13.5 61 137-198 373-440 (459)
89 TIGR03536 DapD_gpp 2,3,4,5-tet 99.6 3.4E-14 7.4E-19 123.4 12.0 105 54-175 174-287 (341)
90 cd03359 LbH_Dynactin_5 Dynacti 99.6 1.2E-13 2.6E-18 111.8 14.3 104 51-165 20-136 (161)
91 TIGR01173 glmU UDP-N-acetylglu 99.6 3E-14 6.5E-19 133.3 12.2 145 53-198 256-433 (451)
92 cd03354 LbH_SAT Serine acetylt 99.6 6.3E-14 1.4E-18 104.6 11.4 79 92-185 23-101 (101)
93 TIGR03535 DapD_actino 2,3,4,5- 99.5 5.5E-14 1.2E-18 121.6 12.1 103 55-175 150-262 (319)
94 TIGR02287 PaaY phenylacetic ac 99.5 1.9E-14 4.1E-19 119.5 8.8 108 71-190 9-121 (192)
95 COG1207 GlmU N-acetylglucosami 99.5 4.6E-14 1E-18 126.5 11.6 135 60-198 257-440 (460)
96 TIGR00965 dapD 2,3,4,5-tetrahy 99.5 1.3E-13 2.9E-18 118.5 13.6 141 50-198 104-260 (269)
97 PLN02472 uncharacterized prote 99.5 3.3E-14 7.2E-19 122.1 9.7 100 72-182 61-171 (246)
98 cd04650 LbH_FBP Ferripyochelin 99.5 2.5E-13 5.5E-18 109.1 14.2 113 49-172 15-133 (154)
99 cd04745 LbH_paaY_like paaY-lik 99.5 2E-13 4.3E-18 109.8 13.4 112 73-196 3-121 (155)
100 PRK14357 glmU bifunctional N-a 99.5 7.8E-14 1.7E-18 130.5 12.8 141 54-199 251-427 (448)
101 TIGR03308 phn_thr-fam phosphon 99.5 2.5E-13 5.4E-18 114.0 14.3 127 55-198 5-151 (204)
102 PRK14352 glmU bifunctional N-a 99.5 3.1E-13 6.8E-18 127.7 14.7 140 53-197 266-441 (482)
103 cd04645 LbH_gamma_CA_like Gamm 99.5 6.6E-13 1.4E-17 106.5 13.0 99 73-182 2-105 (153)
104 PRK11830 dapD 2,3,4,5-tetrahyd 99.5 1.2E-12 2.6E-17 113.5 14.7 117 52-172 109-237 (272)
105 PRK09451 glmU bifunctional N-a 99.5 6.6E-13 1.4E-17 124.6 13.3 143 55-198 262-437 (456)
106 PRK14354 glmU bifunctional N-a 99.5 8.1E-13 1.8E-17 124.0 13.7 62 137-199 369-437 (458)
107 cd03360 LbH_AT_putative Putati 99.5 9.4E-13 2E-17 108.7 12.4 107 76-196 84-191 (197)
108 TIGR03570 NeuD_NnaD sugar O-ac 99.4 1.5E-12 3.2E-17 108.4 12.3 106 77-196 88-194 (201)
109 TIGR02353 NRPS_term_dom non-ri 99.4 1.2E-12 2.6E-17 128.1 11.9 105 69-191 111-215 (695)
110 cd04649 LbH_THP_succinylT_puta 99.4 4.1E-12 8.9E-17 99.5 10.8 103 48-158 9-111 (147)
111 PRK10502 putative acyl transfe 99.4 6.9E-12 1.5E-16 103.5 11.0 115 70-197 51-166 (182)
112 cd03358 LbH_WxcM_N_like WcxM-l 99.3 1.4E-11 3E-16 94.3 10.8 108 73-196 1-108 (119)
113 TIGR02353 NRPS_term_dom non-ri 99.3 7.5E-12 1.6E-16 122.5 10.8 106 63-186 590-695 (695)
114 cd05635 LbH_unknown Uncharacte 99.3 4.3E-11 9.3E-16 89.2 11.8 86 69-170 10-95 (101)
115 PRK09527 lacA galactoside O-ac 99.3 2.5E-11 5.3E-16 101.5 11.3 117 72-198 57-174 (203)
116 PRK05293 glgC glucose-1-phosph 99.3 2.4E-11 5.2E-16 111.5 11.6 103 55-169 273-379 (380)
117 cd05787 LbH_eIF2B_epsilon eIF- 99.3 3.8E-11 8.2E-16 85.0 10.1 77 73-164 2-78 (79)
118 COG2171 DapD Tetrahydrodipicol 99.3 2.5E-11 5.4E-16 103.1 10.4 118 70-196 138-258 (271)
119 cd05635 LbH_unknown Uncharacte 99.3 8.2E-11 1.8E-15 87.7 12.0 83 53-151 12-94 (101)
120 PRK09677 putative lipopolysacc 99.3 6.2E-11 1.4E-15 98.6 12.5 129 60-197 31-172 (192)
121 cd04652 LbH_eIF2B_gamma_C eIF- 99.3 6.4E-11 1.4E-15 84.6 10.7 78 73-166 2-79 (81)
122 TIGR03536 DapD_gpp 2,3,4,5-tet 99.3 7.3E-11 1.6E-15 102.9 12.2 109 47-158 173-288 (341)
123 PRK10191 putative acyl transfe 99.3 5.6E-11 1.2E-15 94.3 10.4 36 119-154 92-128 (146)
124 TIGR01172 cysE serine O-acetyl 99.3 4E-11 8.7E-16 97.1 9.7 69 92-164 88-157 (162)
125 cd03356 LbH_G1P_AT_C_like Left 99.3 8.2E-11 1.8E-15 83.5 10.2 77 73-164 2-78 (79)
126 cd04652 LbH_eIF2B_gamma_C eIF- 99.2 1.3E-10 2.9E-15 83.0 10.6 79 55-149 2-80 (81)
127 cd00208 LbetaH Left-handed par 99.2 1.4E-10 3E-15 81.5 9.3 77 72-170 2-78 (78)
128 TIGR03535 DapD_actino 2,3,4,5- 99.2 1.6E-10 3.5E-15 100.2 11.0 64 92-158 200-263 (319)
129 cd03357 LbH_MAT_GAT Maltose O- 99.2 1.2E-10 2.6E-15 95.0 9.3 115 73-197 45-160 (169)
130 cd05787 LbH_eIF2B_epsilon eIF- 99.2 2.2E-10 4.7E-15 81.1 9.5 76 94-181 2-77 (79)
131 cd05824 LbH_M1P_guanylylT_C Ma 99.2 2.8E-10 6.2E-15 81.0 10.0 46 119-164 34-79 (80)
132 cd04647 LbH_MAT_like Maltose O 99.2 3.6E-10 7.8E-15 84.9 11.1 98 53-164 2-102 (109)
133 PRK11132 cysE serine acetyltra 99.2 2.2E-10 4.8E-15 99.5 11.2 99 55-164 138-237 (273)
134 cd05825 LbH_wcaF_like wcaF-lik 99.2 2.6E-10 5.7E-15 85.9 10.3 95 90-196 2-97 (107)
135 COG1208 GCD1 Nucleoside-diphos 99.2 3.5E-10 7.5E-15 102.9 12.3 100 61-182 253-352 (358)
136 PRK10092 maltose O-acetyltrans 99.2 4.2E-10 9.1E-15 92.8 11.2 97 91-196 73-170 (183)
137 KOG1461 Translation initiation 99.1 1.2E-10 2.6E-15 108.8 8.5 93 70-177 315-407 (673)
138 cd05824 LbH_M1P_guanylylT_C Ma 99.1 6.5E-10 1.4E-14 79.2 10.4 77 55-146 2-79 (80)
139 cd03356 LbH_G1P_AT_C_like Left 99.1 7.4E-10 1.6E-14 78.5 10.6 76 55-146 2-78 (79)
140 PLN02739 serine acetyltransfer 99.1 3E-10 6.5E-15 100.8 9.8 69 92-164 232-301 (355)
141 cd04651 LbH_G1P_AT_C Glucose-1 99.1 1.8E-09 3.9E-14 80.9 11.9 77 60-153 3-79 (104)
142 PLN02694 serine O-acetyltransf 99.1 5.9E-10 1.3E-14 97.1 10.3 69 92-164 187-256 (294)
143 KOG3121 Dynactin, subunit p25 99.1 1.7E-10 3.6E-15 88.7 5.9 103 51-164 32-147 (184)
144 cd00208 LbetaH Left-handed par 99.1 1.6E-09 3.4E-14 76.0 10.0 54 54-107 2-60 (78)
145 COG1208 GCD1 Nucleoside-diphos 99.1 1.2E-09 2.7E-14 99.3 11.5 100 49-169 258-357 (358)
146 KOG1462 Translation initiation 99.0 8.3E-10 1.8E-14 98.0 8.9 87 65-167 329-415 (433)
147 cd03354 LbH_SAT Serine acetylt 99.0 2.5E-09 5.4E-14 79.6 10.2 92 54-164 4-98 (101)
148 cd04651 LbH_G1P_AT_C Glucose-1 99.0 2.4E-09 5.1E-14 80.3 9.9 79 77-172 2-80 (104)
149 PLN02241 glucose-1-phosphate a 99.0 2.7E-09 5.9E-14 99.7 12.3 100 64-179 310-434 (436)
150 TIGR01208 rmlA_long glucose-1- 99.0 2.2E-09 4.9E-14 97.5 11.5 106 61-188 245-351 (353)
151 COG1045 CysE Serine acetyltran 99.0 7.6E-09 1.6E-13 84.4 13.2 77 92-181 94-171 (194)
152 TIGR01208 rmlA_long glucose-1- 99.0 3.2E-09 6.9E-14 96.5 12.0 100 54-164 250-352 (353)
153 COG0110 WbbJ Acetyltransferase 99.0 4.5E-09 9.9E-14 87.0 10.8 114 77-199 53-168 (190)
154 PLN02357 serine acetyltransfer 99.0 1.2E-08 2.6E-13 91.3 13.6 68 92-163 253-321 (360)
155 PRK02862 glgC glucose-1-phosph 98.9 7.2E-09 1.6E-13 96.6 11.4 94 70-179 308-427 (429)
156 PLN02241 glucose-1-phosphate a 98.9 9.4E-09 2E-13 96.1 11.4 100 54-169 317-436 (436)
157 cd03349 LbH_XAT Xenobiotic acy 98.9 2.2E-08 4.8E-13 79.5 11.2 105 53-165 2-118 (145)
158 PRK05293 glgC glucose-1-phosph 98.8 4.6E-08 9.9E-13 89.8 12.2 83 72-172 278-360 (380)
159 KOG1460 GDP-mannose pyrophosph 98.8 1.6E-08 3.4E-13 87.2 8.2 70 52-136 288-357 (407)
160 KOG4042 Dynactin subunit p27/W 98.8 9.8E-09 2.1E-13 79.6 5.6 114 48-172 22-149 (190)
161 TIGR02091 glgC glucose-1-phosp 98.8 7.6E-08 1.7E-12 87.6 11.3 50 119-169 310-359 (361)
162 COG0448 GlgC ADP-glucose pyrop 98.7 7.3E-08 1.6E-12 86.7 9.8 96 47-154 268-363 (393)
163 KOG1460 GDP-mannose pyrophosph 98.7 1.2E-07 2.6E-12 81.9 10.2 74 53-152 283-356 (407)
164 KOG1462 Translation initiation 98.7 4.7E-08 1E-12 87.0 7.3 78 92-182 335-412 (433)
165 PRK02862 glgC glucose-1-phosph 98.6 2E-07 4.3E-12 87.0 10.7 66 54-135 310-393 (429)
166 PRK00844 glgC glucose-1-phosph 98.6 2E-07 4.2E-12 86.5 10.5 69 69-153 314-382 (407)
167 TIGR02092 glgD glucose-1-phosp 98.6 1.5E-07 3.2E-12 86.0 9.2 66 92-171 290-355 (369)
168 TIGR02091 glgC glucose-1-phosp 98.6 3.1E-07 6.8E-12 83.6 10.5 82 54-152 279-360 (361)
169 PRK00725 glgC glucose-1-phosph 98.5 4.6E-07 1E-11 84.5 9.7 65 71-151 328-392 (425)
170 KOG1322 GDP-mannose pyrophosph 98.5 2E-07 4.3E-12 81.6 6.5 99 60-172 254-352 (371)
171 PRK00725 glgC glucose-1-phosph 98.5 4.3E-07 9.2E-12 84.7 9.0 69 92-173 328-396 (425)
172 PRK00844 glgC glucose-1-phosph 98.5 8.4E-07 1.8E-11 82.3 9.6 68 92-172 316-383 (407)
173 TIGR02092 glgD glucose-1-phosp 98.4 1.4E-06 3E-11 79.7 10.0 79 57-153 277-355 (369)
174 PF14602 Hexapep_2: Hexapeptid 98.4 3.8E-07 8.3E-12 53.8 4.0 33 137-171 2-34 (34)
175 KOG4750 Serine O-acetyltransfe 98.4 6.6E-07 1.4E-11 74.3 6.3 44 155-199 201-244 (269)
176 PF00132 Hexapep: Bacterial tr 98.2 1.2E-06 2.7E-11 52.2 3.4 35 136-170 1-35 (36)
177 PF14602 Hexapep_2: Hexapeptid 98.2 2.8E-06 6E-11 50.1 4.0 32 120-152 2-33 (34)
178 COG0448 GlgC ADP-glucose pyrop 97.9 9.8E-05 2.1E-09 66.9 10.3 53 119-172 311-363 (393)
179 COG4801 Predicted acyltransfer 97.9 0.00025 5.5E-09 59.4 11.3 94 55-163 6-101 (277)
180 KOG1322 GDP-mannose pyrophosph 97.9 2.7E-05 5.8E-10 68.5 5.8 13 120-132 317-329 (371)
181 PF00132 Hexapep: Bacterial tr 97.8 2.7E-05 5.9E-10 46.3 3.2 33 71-106 2-34 (36)
182 COG4801 Predicted acyltransfer 97.3 0.0015 3.4E-08 54.8 8.5 60 122-181 36-101 (277)
183 PF13720 Acetyltransf_11: Udp 95.5 0.0031 6.7E-08 45.0 -0.5 29 175-203 2-39 (83)
184 PF07959 Fucokinase: L-fucokin 90.1 0.73 1.6E-05 43.0 6.1 35 119-153 284-318 (414)
185 PF07959 Fucokinase: L-fucokin 86.7 1.7 3.7E-05 40.5 6.1 41 92-143 285-325 (414)
186 PF04519 Bactofilin: Polymer-f 85.3 6.9 0.00015 28.5 7.7 45 58-107 2-46 (101)
187 PF04519 Bactofilin: Polymer-f 80.0 4.8 0.0001 29.4 5.1 79 77-172 3-81 (101)
188 PRK13412 fkp bifunctional fuco 60.7 11 0.00023 39.0 4.1 32 120-151 337-369 (974)
189 COG1664 CcmA Integral membrane 53.2 1.1E+02 0.0024 24.1 8.8 49 55-108 20-68 (146)
190 PRK13412 fkp bifunctional fuco 38.4 94 0.002 32.5 6.7 16 92-107 355-370 (974)
191 KOG2638 UDP-glucose pyrophosph 32.4 81 0.0018 29.5 4.6 20 67-86 450-469 (498)
192 COG1664 CcmA Integral membrane 28.2 2.4E+02 0.0051 22.3 6.2 12 76-87 23-34 (146)
No 1
>PLN02296 carbonate dehydratase
Probab=100.00 E-value=1.3e-46 Score=325.79 Aligned_cols=269 Identities=91% Similarity=1.392 Sum_probs=258.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHhhcccccCchhhhhhhhhhhhhhhhcCCCceECCCCEECCCcEEecCeEECCCCEEc
Q 024153 1 MGTLGKAIYSVGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIW 80 (271)
Q Consensus 1 m~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~ 80 (271)
|++|.+++|.+|.|+|+++|++++++.++.+.+.|++.+++++.++.+.+..+.|+++++|+|++.+.+++.||++|.|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~~~~~~~~p~I~~~~~I~p~A~V~G~V~IG~~~~I~ 80 (269)
T PLN02296 1 MGTLGRAIYTVGFWIRETGQALDRLGCRLQGNYYFREQLSRHRTLMNIFDKAPVVDKDAFVAPSASVIGDVQVGRGSSIW 80 (269)
T ss_pred CchHHHHHHHHHHHHHhhcchHhhhceeeecchHHHHHHHHHHHHHhhcCCCCccCCCCEECCCcEEEcceEECCCCEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEeceeeCCCcEEccCcEEccCcEECCC
Q 024153 81 YGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKH 160 (271)
Q Consensus 81 ~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~~v~Ig~~ 160 (271)
++|+|.++.+++.||++|.|+++|+|+.......+..++++||++|.|++++++++|+||++|+||.+++|.++++|+++
T Consensus 81 ~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~avI~g~~Igd~v~IG~ga~I~~gv~Ig~~ 160 (269)
T PLN02296 81 YGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAVLHGCTVEDEAFVGMGATLLDGVVVEKH 160 (269)
T ss_pred CCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCceecCCEECCCcEECCCcEECCCeEECCC
Confidence 99999998888999999999999999865444444456899999999999999999999999999999999999999999
Q ss_pred cEEccCcEecCCceeCCCcEEeccCceEccCCCHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhccchh
Q 024153 161 AMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINYSNLARVHAAENAKSFDEIEFEKLLRKKFARRDE 240 (271)
Q Consensus 161 ~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (271)
++|+++|+|.+++.||++++|.|+||++++++++.++..+...+..|.+++..++.+..+.+++++.++++++++..+++
T Consensus 161 a~IgagSvV~~~~~I~~~~~~~G~PA~~ir~~~~~~~~~~~~~a~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (269)
T PLN02296 161 AMVAAGALVRQNTRIPSGEVWAGNPAKFLRKLTEEEIAFISQSATNYSNLAQVHAAENAKSFDEIEFEKVLRKKFARRDE 240 (269)
T ss_pred CEECCCCEEecCCEeCCCeEEeccCcEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHhhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccccccCCccccCCCccCCCCCCC
Q 024153 241 EYDSMLGVVRETPAELILPDNVMQDKVPK 269 (271)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (271)
+|++..+..++.||+...|++++++++||
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (269)
T PLN02296 241 EYDSMLGVVRETPPELILPDNILPDKAPK 269 (269)
T ss_pred ccccccCcccCCCCcccCCCccccccCCC
Confidence 99999999999999999999999999987
No 2
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=100.00 E-value=2.4e-33 Score=224.11 Aligned_cols=165 Identities=47% Similarity=0.810 Sum_probs=155.6
Q ss_pred hcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcE
Q 024153 48 IFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVT 127 (271)
Q Consensus 48 ~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~ 127 (271)
+.+..+.|++.++|+|+++|.|++.||+++.|+++++|++|.+.+.||++|.|+++|+|+.... .+++||++|+
T Consensus 7 ~~~~~P~i~~~a~Va~~A~viGdV~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~------~p~~IG~~vt 80 (176)
T COG0663 7 YEGLSPKIDPTAFVAPSATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPG------YPVTIGDDVT 80 (176)
T ss_pred ccCCCCCCCCceEECCCCEEEEeEEECCCCEECCceEEEccCCceEECCCceecCCeEEecCCC------CCeEECCCcE
Confidence 4456788999999999999999999999999999999999999999999999999999997543 5899999999
Q ss_pred ECcCcEEeceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHHHHHHHHHHHHH
Q 024153 128 VGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINY 207 (271)
Q Consensus 128 i~~~~~i~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~~~~~~~~~~~~ 207 (271)
||+++.||+|+||++|+||.|++|+++++||++|+||++|+|+++..+|+++++.|.|+++++.++++++.+++.++.+|
T Consensus 81 IGH~aivHGc~Ig~~~lIGmgA~vldga~IG~~~iVgAgalV~~~k~~p~~~L~~G~Pak~~r~l~~~~~~~~~~~a~~Y 160 (176)
T COG0663 81 IGHGAVVHGCTIGDNVLIGMGATVLDGAVIGDGSIVGAGALVTPGKEIPGGSLVVGSPAKVVRPLDDEELAWLRENAENY 160 (176)
T ss_pred EcCccEEEEeEECCCcEEecCceEeCCcEECCCcEEccCCcccCCcCCCCCeEeecCcceeeecCChhHhhhhhHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 024153 208 SNLARVHAAEN 218 (271)
Q Consensus 208 ~~~~~~~~~~~ 218 (271)
..+...+.+..
T Consensus 161 v~~~~~~~~~~ 171 (176)
T COG0663 161 VKLADRYLAGL 171 (176)
T ss_pred HHHHHHHhhhh
Confidence 99998775443
No 3
>PLN02472 uncharacterized protein
Probab=99.97 E-value=1.6e-28 Score=210.33 Aligned_cols=187 Identities=35% Similarity=0.629 Sum_probs=167.7
Q ss_pred chhhhhhhhhhhhhhhhcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCc
Q 024153 32 NYYFQEQLSRHRTLMNIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKS 111 (271)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~ 111 (271)
.+.+.......+.+..+.+..+.++.+++|.|++.+.+++.||+++.|+++++|+++.+.+.||++|.|+++|+|+....
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~p~i~~~~~I~p~a~i~G~V~Ig~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~ 118 (246)
T PLN02472 39 PDRVKWDYRGQRQIIPLGQWVPKVAVDAYVAPNVVLAGQVTVWDGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWN 118 (246)
T ss_pred ccccccCcCCcceEEecCCcCCccCCCCEECCCCEEecCEEECCCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCc
Confidence 44445556666777888888899999999999999999999999999999999999989999999999999999986542
Q ss_pred CCCCCccceEEcCCcEECcCcEEeceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccC
Q 024153 112 NLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRK 191 (271)
Q Consensus 112 ~~~~~~~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~ 191 (271)
...+..+++.||++|.|++++.|++|+||++|+||.+++|.++++||++++|+++++|.++..||+++++.|+||+++++
T Consensus 119 ~~~~i~~~tvIG~~v~IG~~s~L~~~~Igd~v~IG~~svI~~gavIg~~~~Ig~gsvV~~g~~Ip~g~~~~G~PA~~~~~ 198 (246)
T PLN02472 119 SPTGLPAETLIDRYVTIGAYSLLRSCTIEPECIIGQHSILMEGSLVETHSILEAGSVLPPGRRIPTGELWAGNPARFVRT 198 (246)
T ss_pred cccCCCCCcEECCCCEECCCcEECCeEEcCCCEECCCCEECCCCEECCCCEECCCCEECCCCEeCCCCEEEecCCEEecc
Confidence 22223357999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024153 192 LTEEEMAFISQSAINYSNLARVHAAEN 218 (271)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (271)
+++.+.+.+...++.|.++...+..+.
T Consensus 199 ~~~~~~~~l~~~a~~y~~l~k~~~~~~ 225 (246)
T PLN02472 199 LTNEETLEIPKLAVAINDLSQSHFSEF 225 (246)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999886543
No 4
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=99.97 E-value=8.5e-29 Score=205.88 Aligned_cols=164 Identities=32% Similarity=0.547 Sum_probs=152.6
Q ss_pred hhhcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCC
Q 024153 46 MNIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDN 125 (271)
Q Consensus 46 ~~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~ 125 (271)
+.+.+..+.++++++|+|++.|.+++.||++|.|+++++|+++.+.+.||++|.|+++|+|+.... .++.|+++
T Consensus 4 ~~~~~~~p~i~~~a~I~~~a~I~g~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~------~~siIg~~ 77 (196)
T PRK13627 4 YAFEGLIPVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCD------TDTIVGEN 77 (196)
T ss_pred cccCCCCCccCCCeEECCCCEEECceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCC------CCCEECCC
Confidence 445566778999999999999999999999999999999999887899999999999999986433 47999999
Q ss_pred cEECcCcEEeceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHHHHHHHHHHH
Q 024153 126 VTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAI 205 (271)
Q Consensus 126 ~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~~~~~~~~~~ 205 (271)
+.|++++.+++++||++|+||.+++|.++++||++++|+++|+|.+++.+|++++|.|+||++++.+++.++.+++..+.
T Consensus 78 ~~Ig~~a~i~g~vIG~~v~IG~ga~V~~g~~IG~~s~Vgags~V~~~~~ip~~~~~~G~Pa~~~~~~~~~~~~~~~~~~~ 157 (196)
T PRK13627 78 GHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFQGEKRQLLMGTPARAVRSVSDDELHWKRLNTK 157 (196)
T ss_pred CEECCCcEEeeEEECCCCEECcCCccCCCcEECCCCEEcCCCEEeCCcCcCCCcEEEecCCEEeccCCHHHHHHHHhhHH
Confidence 99999999999999999999999999999999999999999999999888999999999999999999999998888899
Q ss_pred HHHHHHHHHH
Q 024153 206 NYSNLARVHA 215 (271)
Q Consensus 206 ~~~~~~~~~~ 215 (271)
+|.++...+.
T Consensus 158 ~y~~~~~~~~ 167 (196)
T PRK13627 158 EYQDLVGRCH 167 (196)
T ss_pred HHHHHHHHHH
Confidence 9999998884
No 5
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=99.96 E-value=1e-28 Score=204.81 Aligned_cols=163 Identities=36% Similarity=0.602 Sum_probs=152.5
Q ss_pred hhcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCc
Q 024153 47 NIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNV 126 (271)
Q Consensus 47 ~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~ 126 (271)
.+.+..+.|+++++|+|++.|.+++.||++|.|+++++|.++.+.+.||++|.|+++|+|+... .+++.||+++
T Consensus 3 ~~~~~~p~i~~~~~I~~~a~I~G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~------~~~siIg~~~ 76 (192)
T TIGR02287 3 QIDGLTPVVHPEAYVHPTAVLIGDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFP------GQDTVVEENG 76 (192)
T ss_pred CcCCcCCcCCCCcEECCCCEEEeeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccC------CCCCeECCCC
Confidence 4556778899999999999999999999999999999999988889999999999999996432 2479999999
Q ss_pred EECcCcEEeceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHHHHHHHHHHHH
Q 024153 127 TVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAIN 206 (271)
Q Consensus 127 ~i~~~~~i~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~~~~~~~~~~~ 206 (271)
.|++++.|++|+||++|+||.++.+.++++||++++|+++++|.++..||+++++.|+||++++.+++.++.++.+.+..
T Consensus 77 ~Ig~~a~I~~siIg~~~~IG~ga~I~~g~~IG~~s~Vgags~V~~~~~ip~~~l~~G~Pak~i~~~~~~~~~~~~~~~~~ 156 (192)
T TIGR02287 77 HVGHGAILHGCIVGRNALVGMNAVVMDGAVIGENSIVAASAFVKAGAEMPAQYLVVGSPAKVIRELSEQELAWKKQGTHE 156 (192)
T ss_pred EECCCCEEcCCEECCCCEECCCcccCCCeEECCCCEEcCCCEECCCCEECCCeEEEccCCEEeccCCHHHHHHHHHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998889999
Q ss_pred HHHHHHHHH
Q 024153 207 YSNLARVHA 215 (271)
Q Consensus 207 ~~~~~~~~~ 215 (271)
|..+...++
T Consensus 157 y~~~~~~~~ 165 (192)
T TIGR02287 157 YQVLATRCK 165 (192)
T ss_pred HHHHHHHHH
Confidence 999998884
No 6
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=99.95 E-value=4.7e-29 Score=206.35 Aligned_cols=205 Identities=20% Similarity=0.196 Sum_probs=155.6
Q ss_pred hcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCC---------CceEECCCCEECCCCEEecCCcCCCCCcc
Q 024153 48 IFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDV---------NSISIGSGTNIQDNSLVHVAKSNLAGKVL 118 (271)
Q Consensus 48 ~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~---------~~~~IG~~~~I~~~~~I~~~~~~~~~~~~ 118 (271)
.++++++|++++.|++.++|.|.++||+++.|.++++|..++ ..+.||++|.|.++++|+.++.. ..+
T Consensus 29 iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKykge~T~l~IG~~n~IRE~vTi~~GT~~---g~g 105 (260)
T COG1043 29 IIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKGEPTRLIIGDNNTIREFVTIHRGTVQ---GGG 105 (260)
T ss_pred EECCCcEECCCcEEcccEEEeCCeEECCCCEEecccccCCCCcccccCCCceEEEECCCCeEeeEEEEeccccC---Cce
Confidence 444444444444444444455555555555555555554322 45666777777777777665542 124
Q ss_pred ceEEcCCcEECcCcEE-eceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHHH
Q 024153 119 PTIIGDNVTVGHSAVL-HGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEM 197 (271)
Q Consensus 119 ~~~Ig~~~~i~~~~~i-~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~~ 197 (271)
-+.||+++.+..++.+ |+|+||++|.+..++++.++|.|||+++||+.+.|.+.++|+++++++|. +.+.+|+||+.+
T Consensus 106 ~T~IGdnnl~May~HVAHDC~iGn~~ilaNnatLAGHV~igD~aiiGG~saVHQFvrIG~~amiGg~-S~v~~DVpPy~~ 184 (260)
T COG1043 106 VTRIGDNNLIMAYAHVAHDCVIGNNCILANNATLAGHVEVGDYAIIGGLSAVHQFVRIGAHAMIGGL-SAVSQDVPPYVI 184 (260)
T ss_pred eEEECCCCEEEEeeeeeccceecCcEEEecCCeEeccEEECCEEEEcCcceEEEEEEEcchheeccc-cccccCCCCeEE
Confidence 5677777777777766 67999999999999999999999999999999999999999999999876 889999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhccchhhhhhhccccccCCccccC
Q 024153 198 AFISQSAINYSNLARVHAAENAKSFDEIEFEKLLRKKFARRDEEYDSMLGVVRETPAELIL 258 (271)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (271)
.. .+......++.+.|+++..+.+++..++..+|.+.+....+++....+.+..+..++
T Consensus 185 ~~--Gn~a~l~GlN~vGlkRrgf~~e~i~alr~ayk~lfr~~~~~~e~~~~i~~~~~~~~~ 243 (260)
T COG1043 185 AS--GNHARLRGLNIVGLKRRGFSREEIHALRKAYKLLFRSGLTLREALEEIAEEYADNPE 243 (260)
T ss_pred ec--CCcccccccceeeeeccCCCHHHHHHHHHHHHHHeeCCCCHHHHHHHHHHHhcCChH
Confidence 87 777788999999999999998999999999999999998899888877666555544
No 7
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=99.94 E-value=1e-25 Score=181.48 Aligned_cols=153 Identities=38% Similarity=0.659 Sum_probs=140.1
Q ss_pred eECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcE
Q 024153 54 VVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAV 133 (271)
Q Consensus 54 ~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~ 133 (271)
.|+++++|+|++.|.+++.||++|.|+++++|.++.+.+.||++|.|+++|+|+.. ..+++.||+++.|++++.
T Consensus 2 ~i~~~~~i~~~a~i~g~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~------~~~~~~Ig~~~~Ig~~~~ 75 (155)
T cd04745 2 VVDPSSFVHPTAVLIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGF------PGQDTVLEENGHIGHGAI 75 (155)
T ss_pred ccCCCeEECCCCEEEccEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeec------CCCCeEEcCCCEECCCcE
Confidence 46889999999999999999999999999999987677999999999999999642 124799999999999999
Q ss_pred EeceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHHHHHHHHHHHHHHHHHH
Q 024153 134 LHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINYSNLAR 212 (271)
Q Consensus 134 i~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (271)
+.++.||++|+|+.++.|.++++||++++|+++++|.+++.|++++++.|+|++.++.++++++++.+.....|..|+.
T Consensus 76 i~~~~Ig~~~~Ig~~~~I~~g~~Ig~~~~Ig~~s~v~~~~~i~~~~~v~G~Pa~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (155)
T cd04745 76 LHGCTIGRNALVGMNAVVMDGAVIGEESIVGAMAFVKAGTVIPPRSLIAGSPAKVIRELSDEEVAWKTRGTKEYQQLAA 154 (155)
T ss_pred EECCEECCCCEECCCCEEeCCCEECCCCEECCCCEeCCCCEeCCCCEEecCCceEeccCCHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999998999999999999999999999999887777777776653
No 8
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.94 E-value=3.5e-27 Score=203.98 Aligned_cols=155 Identities=20% Similarity=0.365 Sum_probs=122.5
Q ss_pred hhcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCC---------CceEECCCCEECCCCEEecCCcCC----
Q 024153 47 NIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDV---------NSISIGSGTNIQDNSLVHVAKSNL---- 113 (271)
Q Consensus 47 ~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~---------~~~~IG~~~~I~~~~~I~~~~~~~---- 113 (271)
..+++.+.|++++.|++++.|.+++.||+++.|+++++|.+.+ ..+.||++|.|+++++|+.+....
T Consensus 24 ~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~pq~~~~~g~~~~v~IG~~~~I~e~vtI~~gt~~g~~t~ 103 (255)
T PRK12461 24 AVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVGDEPQDFTYKGEESRLEIGDRNVIREGVTIHRGTKGGGVTR 103 (255)
T ss_pred CEECCCCEECCCcEEccCCEEeCCCEECCCCEEccCcEeCCCCccccccCccceeEECCceEECCccEEecCcccCCcEE
Confidence 4566777788888888888888888888888888888887532 368899999999999998754211
Q ss_pred ----------CCCccceEEcCCcEECcCcEEec-eeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEe
Q 024153 114 ----------AGKVLPTIIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWG 182 (271)
Q Consensus 114 ----------~~~~~~~~Ig~~~~i~~~~~i~~-~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~ 182 (271)
....|++.||++|.|++++.+.+ ++|||+++||.++.|.++++||++++|+++|+|.+| |||++++.
T Consensus 104 IG~~~~i~~~~~I~hd~~IG~~v~i~~~~~i~g~v~Igd~a~Ig~~a~V~~~~~IG~~a~Vg~gs~V~~d--Vpp~~i~~ 181 (255)
T PRK12461 104 IGNDNLLMAYSHVAHDCQIGNNVILVNGALLAGHVTVGDRAIISGNCLVHQFCRIGALAMMAGGSRISKD--VPPYCMMA 181 (255)
T ss_pred EcccceeccCcEECCCCEECCCcEECCCCccCCceEECCCeEEeCCCEECCCCEECCCcEECCCceEecc--CCCCeEEe
Confidence 11246777777777777777655 899999999999999999999999999999999998 99999999
Q ss_pred ccCceEc---------cCCCHHHHHHHHHH
Q 024153 183 GNPARFL---------RKLTEEEMAFISQS 203 (271)
Q Consensus 183 G~pa~~~---------~~~~~~~~~~~~~~ 203 (271)
|+||++. +.++++++..++++
T Consensus 182 G~pa~~~~~n~vgl~r~g~~~~~~~~~~~~ 211 (255)
T PRK12461 182 GHPTNVHGLNAVGLRRRGFSSRAIRALKRA 211 (255)
T ss_pred cCcceEeccchhhhhhcCCCHHHHHHHHHH
Confidence 9999862 45788887776665
No 9
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=99.94 E-value=6.8e-25 Score=176.38 Aligned_cols=152 Identities=42% Similarity=0.703 Sum_probs=141.9
Q ss_pred eECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcE
Q 024153 54 VVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAV 133 (271)
Q Consensus 54 ~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~ 133 (271)
.+.++++|+|.+.|.+++.||++|.|++++.|.++..++.||++|.|+++|.|.... ..++.||+++.|+.++.
T Consensus 2 ~~~~~~~i~~~~~i~~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~------~~~~~Ig~~~~I~~~~~ 75 (154)
T cd04650 2 RISPKAYVHPTSYVIGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDH------GYPTEIGDYVTIGHNAV 75 (154)
T ss_pred ccCCCeEECCCCEEEeeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCC------CCCeEECCCCEECCCcE
Confidence 478899999999999999999999999999999877789999999999999998531 13689999999999999
Q ss_pred EeceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHHHHHHHHHHHHHHHHH
Q 024153 134 LHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINYSNLA 211 (271)
Q Consensus 134 i~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (271)
++++.||++|+|+.++.+.++++||+++++++++.|.++..+++++++.|+||++++.+++.++.++++++..|.+++
T Consensus 76 i~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~vg~~~~v~~g~~i~~~~v~~G~pa~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (154)
T cd04650 76 VHGAKVGNYVIVGMGAILLNGAKIGDHVIIGAGAVVTPGKEIPDYSLVLGVPAKVVRKLTEEEIEWIKKNAEEYVELA 153 (154)
T ss_pred EECcEECCCCEEcCCCEEeCCCEECCCCEECCCCEECCCcEeCCCCEEeccCceEeccCCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999998899999999999999999999999999999999888764
No 10
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.93 E-value=3.4e-24 Score=185.40 Aligned_cols=208 Identities=21% Similarity=0.242 Sum_probs=174.9
Q ss_pred hhcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCC--CCccceEEcC
Q 024153 47 NIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLA--GKVLPTIIGD 124 (271)
Q Consensus 47 ~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~--~~~~~~~Ig~ 124 (271)
+.+++.+.|++++.|+|++.|.+++.||++|.|+++++|.++ +.||++|.|+++++|...++++. +....+.||+
T Consensus 6 a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~~~---~~IG~~~~I~~~a~Ig~~pq~~~~~g~~~~v~IG~ 82 (255)
T PRK12461 6 AVIDPSAKLGSGVEIGPFAVIGANVEIGDGTWIGPHAVILGP---TRIGKNNKIHQGAVVGDEPQDFTYKGEESRLEIGD 82 (255)
T ss_pred CEECCCCEECCCCEECCCCEECCCCEECCCcEEccCCEEeCC---CEECCCCEEccCcEeCCCCccccccCccceeEECC
Confidence 467888899999999999999999999999999999999976 89999999999999987655422 2223455666
Q ss_pred CcEECcCcEE-------------------------eceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCc
Q 024153 125 NVTVGHSAVL-------------------------HGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGE 179 (271)
Q Consensus 125 ~~~i~~~~~i-------------------------~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~ 179 (271)
++.|+++++| ++|.||++|+|+.++.+.++++||++++|++++.|.++++|++++
T Consensus 83 ~~~I~e~vtI~~gt~~g~~t~IG~~~~i~~~~~I~hd~~IG~~v~i~~~~~i~g~v~Igd~a~Ig~~a~V~~~~~IG~~a 162 (255)
T PRK12461 83 RNVIREGVTIHRGTKGGGVTRIGNDNLLMAYSHVAHDCQIGNNVILVNGALLAGHVTVGDRAIISGNCLVHQFCRIGALA 162 (255)
T ss_pred ceEECCccEEecCcccCCcEEEcccceeccCcEECCCCEECCCcEECCCCccCCceEECCCeEEeCCCEECCCCEECCCc
Confidence 6666655554 357888888888888889999999999999999999999999999
Q ss_pred EEeccCceEccCCCHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhccchhhhhhhccccccCCccccCC
Q 024153 180 VWGGNPARFLRKLTEEEMAFISQSAINYSNLARVHAAENAKSFDEIEFEKLLRKKFARRDEEYDSMLGVVRETPAELILP 259 (271)
Q Consensus 180 vv~G~pa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (271)
++++. +.+.+|+|++.+.. .++.++..++...|+++..+.++++..+..++.+.+....+.+....+++..++.++.
T Consensus 163 ~Vg~g-s~V~~dVpp~~i~~--G~pa~~~~~n~vgl~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (255)
T PRK12461 163 MMAGG-SRISKDVPPYCMMA--GHPTNVHGLNAVGLRRRGFSSRAIRALKRAYKIIYRSGLSVQQAVAELELQQFESPEV 239 (255)
T ss_pred EECCC-ceEeccCCCCeEEe--cCcceEeccchhhhhhcCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhccCCHHH
Confidence 99766 99999999999876 6677788999999999999999999999999999998888888888777765555443
Q ss_pred C
Q 024153 260 D 260 (271)
Q Consensus 260 ~ 260 (271)
+
T Consensus 240 ~ 240 (255)
T PRK12461 240 E 240 (255)
T ss_pred H
Confidence 3
No 11
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=99.92 E-value=6.4e-24 Score=170.61 Aligned_cols=151 Identities=55% Similarity=0.950 Sum_probs=141.9
Q ss_pred ECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEE
Q 024153 55 VNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVL 134 (271)
Q Consensus 55 i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i 134 (271)
++++++|+|++.|.+++.||+++.|+++++|.++...+.||++|.|+++++|..... ++++||+++.|+.++.+
T Consensus 2 ~~~~~~i~~~a~i~g~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~------~~~~Ig~~~~I~~~~~i 75 (153)
T cd04645 2 IDPSAFIAPNATVIGDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPG------YPTIIGDNVTVGHGAVL 75 (153)
T ss_pred ccCCeEECCCCEEEEeEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCC------CCeEEcCCcEECCCcEE
Confidence 688999999999999999999999999999998888899999999999999986432 46899999999999999
Q ss_pred eceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHHHHHHHHHHHHHHHHH
Q 024153 135 HGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINYSNLA 211 (271)
Q Consensus 135 ~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (271)
.++.||++++|+.++.+.++++|+++|+|++++.|.+++.+++++++.|.|+++.++++..+...+.++..+|.+|.
T Consensus 76 ~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~ig~~~~v~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (153)
T cd04645 76 HGCTIGDNCLIGMGAIILDGAVIGKGSIVAAGSLVPPGKVIPPGSLVAGSPAKVVRELTDEEIAELRESAEHYVELA 152 (153)
T ss_pred eeeEECCCCEECCCCEEcCCCEECCCCEECCCCEECCCCEeCCCCEEeCCcchhcccCCHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988888764
No 12
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.92 E-value=2.3e-25 Score=193.90 Aligned_cols=155 Identities=22% Similarity=0.325 Sum_probs=117.9
Q ss_pred hhcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCC---------CceEECCCCEECCCCEEecCCcCCC---
Q 024153 47 NIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDV---------NSISIGSGTNIQDNSLVHVAKSNLA--- 114 (271)
Q Consensus 47 ~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~---------~~~~IG~~~~I~~~~~I~~~~~~~~--- 114 (271)
..+++.+.|++++.|++++.|.+++.||++|.|+++++|.+++ ..+.||++|.|+++|+|..+.....
T Consensus 27 ~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~IG~~~~I~e~~~I~~~~~~~~~~t 106 (262)
T PRK05289 27 CVIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVIGDNNTIREFVTINRGTVQGGGVT 106 (262)
T ss_pred eEECCCCEECCCCEECCCCEEcCccEECCCCEEcccceecCCceeecccCCCCeEEECCCCEECCCeEEecccccCCCee
Confidence 3456667777777777778888888888888888888886532 3588999999999999886542110
Q ss_pred ------------CCccceEEcCCcEECcCcEEec-eeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEE
Q 024153 115 ------------GKVLPTIIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVW 181 (271)
Q Consensus 115 ------------~~~~~~~Ig~~~~i~~~~~i~~-~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv 181 (271)
...|++.||+++.+++++.+.+ ++|||+||||.++.|.++++||++++|+++|+|.++ ||+++++
T Consensus 107 ~IG~~~~I~~~~~I~h~~~IG~~v~i~~~~~i~g~v~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~gs~V~~d--i~~~~~~ 184 (262)
T PRK05289 107 RIGDNNLLMAYVHVAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLTAVHQFVRIGAHAMVGGMSGVSQD--VPPYVLA 184 (262)
T ss_pred EECCceEECCCCEECCeEEECCCeEECCccccccccccCCcEEEeecceecCCCEECCCCEEeeecceecc--CCCCeEE
Confidence 0124455555555555555444 899999999999999999999999999999999998 9999999
Q ss_pred eccCceEc---------cCCCHHHHHHHHHH
Q 024153 182 GGNPARFL---------RKLTEEEMAFISQS 203 (271)
Q Consensus 182 ~G~pa~~~---------~~~~~~~~~~~~~~ 203 (271)
.|+||+.. ++++++.+..++.+
T Consensus 185 ~G~pa~~~~~n~~g~~~~~~~~~~~~~i~~a 215 (262)
T PRK05289 185 EGNPARLRGLNLVGLKRRGFSREEIHALRRA 215 (262)
T ss_pred ecccCeEeccchhhhhhCCCCHHHHHHHHHH
Confidence 99999975 46777777665544
No 13
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=99.92 E-value=2.1e-24 Score=178.73 Aligned_cols=149 Identities=25% Similarity=0.324 Sum_probs=130.6
Q ss_pred cCCCceECCCCEECCCcEEec------------CeEECCCCEEccCcEEecCC----CceEECCCCEECCCCEEecCCcC
Q 024153 49 FDKAPVVNKDVFLAPSASIIG------------DVQVGRGSSIWYGCVLRGDV----NSISIGSGTNIQDNSLVHVAKSN 112 (271)
Q Consensus 49 ~~~~~~i~~~~~I~~~~~i~~------------~v~IG~~~~I~~~~~I~~~~----~~~~IG~~~~I~~~~~I~~~~~~ 112 (271)
+....+||+++.|.|++.|++ .+.||+++.|.++++|.... +.+.||+++.|..++.|-
T Consensus 48 v~G~T~IG~~n~I~~~A~iG~~pQdlKykge~T~l~IG~~n~IRE~vTi~~GT~~g~g~T~IGdnnl~May~HVA----- 122 (260)
T COG1043 48 VEGHTTIGRNNRIFPFASIGEDPQDLKYKGEPTRLIIGDNNTIREFVTIHRGTVQGGGVTRIGDNNLIMAYAHVA----- 122 (260)
T ss_pred EeCCeEECCCCEEecccccCCCCcccccCCCceEEEECCCCeEeeEEEEeccccCCceeEEECCCCEEEEeeeee-----
Confidence 444567889999999998863 48899999999999997533 568899999999998885
Q ss_pred CCCCccceEEcCCcEECcCcEEec-eeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEc--
Q 024153 113 LAGKVLPTIIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFL-- 189 (271)
Q Consensus 113 ~~~~~~~~~Ig~~~~i~~~~~i~~-~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~-- 189 (271)
|+|.||++|.+.+++.|.| +.|||++.||..+-|.+.|+||++|+||+.|.|.+| |||++++.|+||+..
T Consensus 123 -----HDC~iGn~~ilaNnatLAGHV~igD~aiiGG~saVHQFvrIG~~amiGg~S~v~~D--VpPy~~~~Gn~a~l~Gl 195 (260)
T COG1043 123 -----HDCVIGNNCILANNATLAGHVEVGDYAIIGGLSAVHQFVRIGAHAMIGGLSAVSQD--VPPYVIASGNHARLRGL 195 (260)
T ss_pred -----ccceecCcEEEecCCeEeccEEECCEEEEcCcceEEEEEEEcchheeccccccccC--CCCeEEecCCccccccc
Confidence 7999999999999999988 999999999999999999999999999999999999 999999999999875
Q ss_pred -------cCCCHHHHHHHHHHHHHHHHHHH
Q 024153 190 -------RKLTEEEMAFISQSAINYSNLAR 212 (271)
Q Consensus 190 -------~~~~~~~~~~~~~~~~~~~~~~~ 212 (271)
+.++.+++..++++ |+.+.+
T Consensus 196 N~vGlkRrgf~~e~i~alr~a---yk~lfr 222 (260)
T COG1043 196 NIVGLKRRGFSREEIHALRKA---YKLLFR 222 (260)
T ss_pred ceeeeeccCCCHHHHHHHHHH---HHHHee
Confidence 67888888887776 555553
No 14
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.91 E-value=2.7e-23 Score=180.92 Aligned_cols=203 Identities=22% Similarity=0.244 Sum_probs=149.7
Q ss_pred hhhcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCC--CCCccceEEc
Q 024153 46 MNIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNL--AGKVLPTIIG 123 (271)
Q Consensus 46 ~~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~--~~~~~~~~Ig 123 (271)
.+.+.+.+.|++++.|+|++.|.+++.||++|.|+++++|.+. +.||++|.|+++++|...+++. .+....+.||
T Consensus 8 ~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~g~---~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~IG 84 (262)
T PRK05289 8 TAIVEPGAKIGENVEIGPFCVIGPNVVIGDGTVIGSHVVIDGH---TTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVIG 84 (262)
T ss_pred CCEECCCCEECCCCEECCCeEECCCCEECCCCEECCCCEEcCc---cEECCCCEEcccceecCCceeecccCCCCeEEEC
Confidence 3567888999999999999999999999999999999999976 8999999999999997654432 1112234444
Q ss_pred CCcEECcC-------------------------cEE-eceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCC
Q 024153 124 DNVTVGHS-------------------------AVL-HGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPC 177 (271)
Q Consensus 124 ~~~~i~~~-------------------------~~i-~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~ 177 (271)
++|.|+++ +.| |+|.||++|++++++.+.++++||++|+||+++.|.++++|++
T Consensus 85 ~~~~I~e~~~I~~~~~~~~~~t~IG~~~~I~~~~~I~h~~~IG~~v~i~~~~~i~g~v~Igd~~~Ig~~~~i~~~v~Ig~ 164 (262)
T PRK05289 85 DNNTIREFVTINRGTVQGGGVTRIGDNNLLMAYVHVAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLTAVHQFVRIGA 164 (262)
T ss_pred CCCEECCCeEEecccccCCCeeEECCceEECCCCEECCeEEECCCeEECCccccccccccCCcEEEeecceecCCCEECC
Confidence 44444444 444 3466677777777777778899999999999999999999999
Q ss_pred CcEEeccCceEccCCCHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhccchhhhhhhccccccCCc
Q 024153 178 GEVWGGNPARFLRKLTEEEMAFISQSAINYSNLARVHAAENAKSFDEIEFEKLLRKKFARRDEEYDSMLGVVRETPA 254 (271)
Q Consensus 178 ~~vv~G~pa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (271)
++++++. +.+.++++++.+.+ .++.+...+....+++...+-+.+..++..++.+.+....+.+....+++..+
T Consensus 165 ~~~Ig~g-s~V~~di~~~~~~~--G~pa~~~~~n~~g~~~~~~~~~~~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~ 238 (262)
T PRK05289 165 HAMVGGM-SGVSQDVPPYVLAE--GNPARLRGLNLVGLKRRGFSREEIHALRRAYKLLYRSGLTLEEALEELAEEYP 238 (262)
T ss_pred CCEEeee-cceeccCCCCeEEe--cccCeEeccchhhhhhCCCCHHHHHHHHHHHHHHHHcCccHHHHHHHHHhhcc
Confidence 9999765 99999999877765 33333344566666666666666666666666666666555555555554433
No 15
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.91 E-value=5e-23 Score=167.17 Aligned_cols=136 Identities=16% Similarity=0.233 Sum_probs=122.7
Q ss_pred eECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcE
Q 024153 54 VVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAV 133 (271)
Q Consensus 54 ~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~ 133 (271)
+|+++++|+|++.|.+++.||++|.|++++.|..+.+.+.||++|.|+++|+|........+...++.||+++.+..++.
T Consensus 1 ~~~~~~~I~~~a~i~g~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~ 80 (164)
T cd04646 1 KIAPGAVVCQESEIRGDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCK 80 (164)
T ss_pred CcCCCcEECCCCEEcCceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcE
Confidence 37899999999999999999999999999999876667999999999999999865432223345689999999999999
Q ss_pred EeceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEc
Q 024153 134 LHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFL 189 (271)
Q Consensus 134 i~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~ 189 (271)
+.+++|||+|+||.+++|.++++||++|+||++++|.+++.+|+++++.|+|+...
T Consensus 81 i~~~~IGd~~~Ig~~a~I~~gv~Ig~~~~IgagsvV~~~~~i~~~~vi~g~~~~~~ 136 (164)
T cd04646 81 CEALKIGNNNVFESKSFVGKNVIITDGCIIGAGCKLPSSEILPENTVIYGADCLRR 136 (164)
T ss_pred EEeeEECCCCEEeCCCEECCCCEECCCCEEeCCeEECCCcEECCCeEEeCCceEEE
Confidence 99999999999999999999999999999999999999999999999999987554
No 16
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.90 E-value=1.3e-22 Score=164.43 Aligned_cols=153 Identities=20% Similarity=0.373 Sum_probs=135.6
Q ss_pred ECCCCEECCCcEEec--CeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCC--CccceEEcCCcEECc
Q 024153 55 VNKDVFLAPSASIIG--DVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAG--KVLPTIIGDNVTVGH 130 (271)
Q Consensus 55 i~~~~~I~~~~~i~~--~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~--~~~~~~Ig~~~~i~~ 130 (271)
...++.|+..+.|.+ ++.||+++.|+++++|.++...+.||++|.|+++|.|.+..+...+ ...+++||+++.|++
T Consensus 4 ~~~~~~i~~~~~i~g~~~I~ig~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~ 83 (161)
T cd03359 4 TASGNKVSRKSVICGSQNIVLNGKTIIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGE 83 (161)
T ss_pred CcCCCeecchheeccCCCEEECCceEEcCCCEEeCCCcceEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECC
Confidence 456778888888866 7999999999999999988778999999999999999875432221 234789999999999
Q ss_pred CcEEeceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHHHHHHHHHHHHH
Q 024153 131 SAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINY 207 (271)
Q Consensus 131 ~~~i~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~~~~~~~~~~~~ 207 (271)
++.++++.|+++++|+.++.|..+++|+++++|+++++|.+++.|+++++++|+||++++++++.+.+.+....++|
T Consensus 84 ~~~i~~~~Ig~~v~Ig~~~~Ig~~~~I~~~~~i~~g~~V~~~~~i~~~~vv~g~pa~~i~~~~~~~~~~~~~~~~~~ 160 (161)
T cd03359 84 NCVVNAAQIGSYVHIGKNCVIGRRCIIKDCVKILDGTVVPPDTVIPPYSVVSGRPARFIGELPECTQELMEEETKEY 160 (161)
T ss_pred CCEEEeeEEcCCcEECCCCEEcCCCEECCCcEECCCCEECCCCEeCCCCEEeccccEEEEecchhhhHHHHhhHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998877766655
No 17
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=99.90 E-value=1.1e-22 Score=176.60 Aligned_cols=155 Identities=22% Similarity=0.340 Sum_probs=122.4
Q ss_pred hhhcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCC---------CceEECCCCEECCCCEEecCCcCC--C
Q 024153 46 MNIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDV---------NSISIGSGTNIQDNSLVHVAKSNL--A 114 (271)
Q Consensus 46 ~~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~---------~~~~IG~~~~I~~~~~I~~~~~~~--~ 114 (271)
...+++.+.|++++.|+|++.|.+++.||++|.|+++++|.+.+ ..+.||++|.|+++|+|....... .
T Consensus 22 ~~~I~~~v~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~ 101 (254)
T TIGR01852 22 FCIVGPGVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDNNTIREFVTINRGTASGGGV 101 (254)
T ss_pred CCEECCCCEECCCCEECCCCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEECCCCEECCCCEECCcccCCCCc
Confidence 34567788888889999999999999999999999999997422 368999999999999998654211 0
Q ss_pred -------------CCccceEEcCCcEECcCcEEe-ceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcE
Q 024153 115 -------------GKVLPTIIGDNVTVGHSAVLH-GCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEV 180 (271)
Q Consensus 115 -------------~~~~~~~Ig~~~~i~~~~~i~-~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~v 180 (271)
...++++||+++.|++++.+. +++|||+|+||.++.|.++++||++++|+++|+|.++ ||++++
T Consensus 102 ~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~~~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V~~~--i~~~~~ 179 (254)
T TIGR01852 102 TRIGNNNLLMAYSHIAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLVAVHQFVRIGRYAMIGGLSAVSKD--VPPYGL 179 (254)
T ss_pred EEECCCCEECCCCEEccCCEECCCCEECCCCEECCCcEECCCcEEeccCEECCCcEECCCCEEeeeeeEeee--cCCCcE
Confidence 012566666666666666664 4899999999999999999999999999999999998 999999
Q ss_pred EeccCceE---------ccCCCHHHHHHHHH
Q 024153 181 WGGNPARF---------LRKLTEEEMAFISQ 202 (271)
Q Consensus 181 v~G~pa~~---------~~~~~~~~~~~~~~ 202 (271)
+.|+|+++ ..+++++....+..
T Consensus 180 ~~G~pa~~~~~~~~g~~~~~~~~~~~~~~~~ 210 (254)
T TIGR01852 180 VEGNRARLRGLNIVGLRRRGFSREDITAIKK 210 (254)
T ss_pred EecCcCeecccceeeeecCCCCHHHHHHHHH
Confidence 99999998 34566666654443
No 18
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=99.89 E-value=2.8e-23 Score=180.29 Aligned_cols=141 Identities=21% Similarity=0.298 Sum_probs=107.5
Q ss_pred hhcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecC---------CCceEECCCCEECCCCEEecCCcCCC---
Q 024153 47 NIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGD---------VNSISIGSGTNIQDNSLVHVAKSNLA--- 114 (271)
Q Consensus 47 ~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~---------~~~~~IG~~~~I~~~~~I~~~~~~~~--- 114 (271)
..+++.+.|++++.|+|++.|.+++.||++|.|+++++|.+. ...+.||++|.|+++|+|........
T Consensus 24 ~~I~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~Ig~~~~I~~~~~~~~~~~ 103 (254)
T cd03351 24 CVIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDNNTIREFVTIHRGTAQGGGVT 103 (254)
T ss_pred cEECCCCEECCCCEECCCcEEeCCeEECCCCEEecceeecCcccceeecCCCceEEECCCCEECCccEEeccccCCCCce
Confidence 455677788888888888888888888888888888888642 23688999999999999876432110
Q ss_pred ------------CCccceEEcCCcEECcCcEE-eceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEE
Q 024153 115 ------------GKVLPTIIGDNVTVGHSAVL-HGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVW 181 (271)
Q Consensus 115 ------------~~~~~~~Ig~~~~i~~~~~i-~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv 181 (271)
...+++.||++|.|++++.+ ++++||++|+|++++.|.++++||++++|+++|+|.++ |++++++
T Consensus 104 ~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V~~~--i~~~~~~ 181 (254)
T cd03351 104 RIGNNNLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQFCRIGRHAMVGGGSGVVQD--VPPYVIA 181 (254)
T ss_pred EECCCCEECCCCEECCCCEECCCcEECCCccccCCcEeCCCcEECCcceECCCcEECCCCEECcCCEEeee--cCCCeEE
Confidence 00134444444444444444 34899999999999999999999999999999999998 8999999
Q ss_pred eccCceEc
Q 024153 182 GGNPARFL 189 (271)
Q Consensus 182 ~G~pa~~~ 189 (271)
.|+|++..
T Consensus 182 ~G~~~~~~ 189 (254)
T cd03351 182 AGNRARLR 189 (254)
T ss_pred EccCCeEe
Confidence 99999753
No 19
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=99.88 E-value=9.3e-22 Score=167.80 Aligned_cols=128 Identities=34% Similarity=0.548 Sum_probs=119.5
Q ss_pred ECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEE
Q 024153 55 VNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVL 134 (271)
Q Consensus 55 i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i 134 (271)
++.++.|++++.|.+++.||+++.|++++.|.+. +.||++|.|++++.|.. ++.||++|.|+.++.+
T Consensus 83 vg~~~~I~~~a~I~g~v~IG~~~~I~~~~~I~~~---~~IG~~~~I~~~a~I~~----------~s~Ig~~~~Ig~~~~I 149 (231)
T TIGR03532 83 KNINARIEPGAIIRDQVIIGDNAVIMMGAVINIG---AEIGEGTMIDMNAVLGG----------RATVGKNVHIGAGAVL 149 (231)
T ss_pred cccccEECCCCEEeCCeEECCCCEEecCcccCCC---eEECCCCEEccccccCC----------CcEECCCcEEcCCcEE
Confidence 5788999999999999999999999999999865 89999999999999863 7899999999999999
Q ss_pred e---------ceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHHH
Q 024153 135 H---------GCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEM 197 (271)
Q Consensus 135 ~---------~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~~ 197 (271)
. ++.||++|+||++++|.++++||++++|+++++|.++ +++++++.|+||++++.+++...
T Consensus 150 ~~~~~~~~~~~v~IGd~v~IG~gsvI~~g~~Ig~~~~IgagsvV~~d--i~~~~vv~G~PA~~i~~~~~~~~ 219 (231)
T TIGR03532 150 AGVIEPPSAKPVVIEDNVLIGANAVILEGVRVGKGAVVAAGAIVTED--VPPNTVVAGVPAKVIKQVDEKTK 219 (231)
T ss_pred ccccccccCCCeEECCCcEECCCCEEcCCCEECCCCEECCCCEEccc--cCCCcEEEecCCEEeccCChhHh
Confidence 7 4899999999999999999999999999999999998 99999999999999999988664
No 20
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=99.88 E-value=1.7e-21 Score=162.53 Aligned_cols=132 Identities=17% Similarity=0.372 Sum_probs=109.5
Q ss_pred eECCCCEECCCcEEe--cCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcC
Q 024153 54 VVNKDVFLAPSASII--GDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHS 131 (271)
Q Consensus 54 ~i~~~~~I~~~~~i~--~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~ 131 (271)
.++++++|.|++.+. .++.||+++.|+.+++|.. .+.+.||++|.|+++|.|....++.... +. ..+
T Consensus 57 ~ig~~~~I~~~~~~~~g~ni~IG~~v~In~~~~I~d-~~~I~IGd~v~Ig~~v~I~~~~h~~~~~-----~r-----~~g 125 (203)
T PRK09527 57 TVGENAWVEPPVYFSYGSNIHIGRNFYANFNLTIVD-DYTVTIGDNVLIAPNVTLSVTGHPVHHE-----LR-----KNG 125 (203)
T ss_pred hcCCCcEEcCCEEEeeCCCcEEcCCcEECCCcEEec-CCCEEECCCCEECCCCEEEeCCCCCChh-----hc-----ccc
Confidence 389999999998874 6899999999999999974 3679999999999999998755432110 00 011
Q ss_pred c-EEeceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHHHH
Q 024153 132 A-VLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMA 198 (271)
Q Consensus 132 ~-~i~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~~~ 198 (271)
. ..+.++||++||||.+++|.++++||++++|+++|+|.++ ||++++++|+||++++.+.+.+..
T Consensus 126 ~~~~~pi~IGd~v~IG~~~~I~~gv~IG~~~vIgagsvV~kd--vp~~~v~~G~PAk~i~~~~~~~~~ 191 (203)
T PRK09527 126 EMYSFPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSVVTKD--IPPNVVAAGVPCRVIREINDRDKQ 191 (203)
T ss_pred ccccCCeEECCCcEECCCCEEcCCCEECCCCEECCCCEEccc--CCCCcEEEeeCCEEeccCCHHHHH
Confidence 1 2256999999999999999999999999999999999998 999999999999999999765543
No 21
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=99.88 E-value=1.7e-21 Score=163.36 Aligned_cols=86 Identities=27% Similarity=0.469 Sum_probs=71.5
Q ss_pred eceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccC-CCHHHHHHHHHHHHHHHHHHHH
Q 024153 135 HGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRK-LTEEEMAFISQSAINYSNLARV 213 (271)
Q Consensus 135 ~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 213 (271)
.++.||++|+||.+++|.++++||++++|+++++|.++ ||++++++|+||++++. ++++.++.+. ...||++..+
T Consensus 107 ~~~~Ig~~~~Ig~~~~I~~gv~Ig~~~~I~~gs~v~~~--i~~~~~~~G~Pa~~~~~~~~~~~~~~l~--~~~ww~~~~~ 182 (204)
T TIGR03308 107 KRVTIGHDVWIGHGAVILPGVTIGNGAVIAAGAVVTKD--VAPYTIVAGVPAKLIRRRFPPEIAARIE--ALAWWDWDHE 182 (204)
T ss_pred CCeEECCCCEECCCCEECCCCEECCCCEECCCCEECCC--CCCCcEEEecCchHhhhcCCHHHHHHHH--hccccCCCHH
Confidence 36899999999999999999999999999999999998 99999999999999874 6777777665 3356777776
Q ss_pred HHHHhccchhh
Q 024153 214 HAAENAKSFDE 224 (271)
Q Consensus 214 ~~~~~~~~~~~ 224 (271)
.+++....+..
T Consensus 183 ~~~~~~~~~~~ 193 (204)
T TIGR03308 183 TLREALPDFRD 193 (204)
T ss_pred HHHHHHHHHhc
Confidence 66655555543
No 22
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=99.87 E-value=3.4e-22 Score=173.52 Aligned_cols=149 Identities=22% Similarity=0.285 Sum_probs=122.7
Q ss_pred hhcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCC-------------
Q 024153 47 NIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNL------------- 113 (271)
Q Consensus 47 ~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~------------- 113 (271)
..+.+.+.|++++.|+|++.|.+++.||+++.|++++.|.++ +.||++|.|+++++|.....+.
T Consensus 5 a~I~~~a~Ig~~~~I~~~~~I~~~v~Ig~~~~I~~~~~I~~~---v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~ 81 (254)
T TIGR01852 5 AIIEPGAEIGENVEIGPFCIVGPGVKIGDGVELKSHVVILGH---TTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGD 81 (254)
T ss_pred CEeCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEeee---EEECCCCEECCCcEeCCCCcceeecCccceEEECC
Confidence 456788899999999999999999999999999999999876 8999999999999997432210
Q ss_pred -----------CCC---ccceEEcCCcEECcCcEE-eceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCC
Q 024153 114 -----------AGK---VLPTIIGDNVTVGHSAVL-HGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCG 178 (271)
Q Consensus 114 -----------~~~---~~~~~Ig~~~~i~~~~~i-~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~ 178 (271)
.+. .+.+.||+++.|+.++.+ ++|+||++|+|++++.+..+++||++|+|++++.|.++++|+++
T Consensus 82 ~~~I~~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~~~Igd~~~Ig~~~~i~~~v~Ig~~ 161 (254)
T TIGR01852 82 NNTIREFVTINRGTASGGGVTRIGNNNLLMAYSHIAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLVAVHQFVRIGRY 161 (254)
T ss_pred CCEECCCCEECCcccCCCCcEEECCCCEECCCCEEccCCEECCCCEECCCCEECCCcEECCCcEEeccCEECCCcEECCC
Confidence 000 135666777777777766 56899999999999999999999999999999999999999999
Q ss_pred cEEeccCceEccCCCHHHHHH
Q 024153 179 EVWGGNPARFLRKLTEEEMAF 199 (271)
Q Consensus 179 ~vv~G~pa~~~~~~~~~~~~~ 199 (271)
+++++. +.+.++++++.+.+
T Consensus 162 ~~Ig~~-s~V~~~i~~~~~~~ 181 (254)
T TIGR01852 162 AMIGGL-SAVSKDVPPYGLVE 181 (254)
T ss_pred CEEeee-eeEeeecCCCcEEe
Confidence 999765 88888888766543
No 23
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=99.87 E-value=2.8e-21 Score=167.73 Aligned_cols=147 Identities=19% Similarity=0.169 Sum_probs=126.4
Q ss_pred hhcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECC------------CCEECCCCEEecCCcCCC
Q 024153 47 NIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGS------------GTNIQDNSLVHVAKSNLA 114 (271)
Q Consensus 47 ~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~------------~~~I~~~~~I~~~~~~~~ 114 (271)
..+++.+.|++++.|++++.|.+++.|+.++.|++++.|... +.|+. ++.|+++|.|.....-..
T Consensus 18 ~~I~p~~~I~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~---a~I~~~~~~~~~~g~~~~v~IG~~~~Ig~~~~I~~ 94 (254)
T cd03351 18 VEIGPFCVIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPF---ASIGEAPQDLKYKGEPTRLEIGDNNTIREFVTIHR 94 (254)
T ss_pred CEECCCcEECCCCEECCCCEECCCcEEeCCeEECCCCEEecc---eeecCcccceeecCCCceEEECCCCEECCccEEec
Confidence 356677777778888888888999999999999999999965 88985 899999999987655333
Q ss_pred CC---ccceEEcCCcEECcCcEE-eceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEcc
Q 024153 115 GK---VLPTIIGDNVTVGHSAVL-HGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLR 190 (271)
Q Consensus 115 ~~---~~~~~Ig~~~~i~~~~~i-~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~ 190 (271)
+. .+.++||++|.|++++.| ++|.||++|+|++++.+..+++||++|+|++++.|.++++|++++++++. +.+.+
T Consensus 95 ~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~~-s~V~~ 173 (254)
T cd03351 95 GTAQGGGVTRIGNNNLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQFCRIGRHAMVGGG-SGVVQ 173 (254)
T ss_pred cccCCCCceEECCCCEECCCCEECCCCEECCCcEECCCccccCCcEeCCCcEECCcceECCCcEECCCCEECcC-CEEee
Confidence 22 146999999999999999 67999999999999999999999999999999999999999999999766 88888
Q ss_pred CCCHHHH
Q 024153 191 KLTEEEM 197 (271)
Q Consensus 191 ~~~~~~~ 197 (271)
+++++.+
T Consensus 174 ~i~~~~~ 180 (254)
T cd03351 174 DVPPYVI 180 (254)
T ss_pred ecCCCeE
Confidence 8875433
No 24
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=99.87 E-value=6.6e-21 Score=166.42 Aligned_cols=146 Identities=18% Similarity=0.344 Sum_probs=112.6
Q ss_pred hhcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCC---------Cc
Q 024153 47 NIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAG---------KV 117 (271)
Q Consensus 47 ~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~---------~~ 117 (271)
..++.++.||+++.|+++++|+.++.||++|.|+++++|..+ +.||++|.|++++.|....+.+.+ ..
T Consensus 124 ~vI~~~v~IG~~~~I~~~~vIg~~~~IG~~~~i~~~v~I~~~---~~IG~~v~I~~GavIG~dgFg~a~~~~g~~Ki~q~ 200 (338)
T COG1044 124 VVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHN---VVIGNNVIIHSGAVIGADGFGYAGTAIGWVKIPQI 200 (338)
T ss_pred eEECCCCEECCCcEECCCCEECCCcEECCCcEEcCCCEEecC---cEECCceEECCCCEEccCccccccccCCceEccee
Confidence 456667777777777777788888888888888888888754 889999999999999887665432 25
Q ss_pred cceEEcCCcEECcCcEE-----------------------eceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCce
Q 024153 118 LPTIIGDNVTVGHSAVL-----------------------HGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTK 174 (271)
Q Consensus 118 ~~~~Ig~~~~i~~~~~i-----------------------~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~ 174 (271)
+.++||++|.||.++.| |+|.||++|.|.+++.|.+.+.||++|+||..+.|..+..
T Consensus 201 g~V~Igd~VeIGanT~Idrga~~dTvIg~~~kIdN~vqIaHnv~IG~~~~I~~~vgIaGs~~IG~~v~igg~vgI~gh~~ 280 (338)
T COG1044 201 GRVIIGDDVEIGANTTIDRGALDDTVIGEGVKIDNLVQIGHNVRIGEHCIIAGQVGIAGSVKIGKYVIIGGQVGIAGHLE 280 (338)
T ss_pred ceEEECCceEEcccceeccccccCceecCCcEEcceeEEccccEECCCcEEeccceeeccceECCeEEECcceeecCceE
Confidence 67888888888888777 4577777777777777888889999999999999999999
Q ss_pred eCCCcEEeccCceEccCCCHHH
Q 024153 175 IPCGEVWGGNPARFLRKLTEEE 196 (271)
Q Consensus 175 I~~~~vv~G~pa~~~~~~~~~~ 196 (271)
|++++.+.+. +.+.+++++..
T Consensus 281 IgD~~~I~~~-~~v~~~i~~~~ 301 (338)
T COG1044 281 IGDGVTIGAR-SGVMASITEPG 301 (338)
T ss_pred EcCCCEEecc-cccccccCCCc
Confidence 9999888765 55555544433
No 25
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=99.86 E-value=2.6e-21 Score=172.98 Aligned_cols=52 Identities=21% Similarity=0.332 Sum_probs=33.4
Q ss_pred eeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEcc
Q 024153 137 CTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLR 190 (271)
Q Consensus 137 ~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~ 190 (271)
++||++|+||.++.|.++++||++++|+++|+|+++ +|+++++.|+||+..+
T Consensus 254 ~~IG~~~~ig~~~~I~~~v~Ig~~~~ig~~s~V~~~--v~~~~~~~G~pa~~~~ 305 (324)
T TIGR01853 254 TKIGRNVIIGGQVGVAGHLEIGDNVTIGAKSGVTKS--IPPPGVYGGIPARPNK 305 (324)
T ss_pred cEECCCeEEccccccccCCEECCCCEEccCCEeCCc--CCCCcEEEccCccHHH
Confidence 556666666666666666666666666666666666 6666666666665544
No 26
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=99.86 E-value=7.4e-21 Score=170.08 Aligned_cols=145 Identities=16% Similarity=0.305 Sum_probs=102.0
Q ss_pred CCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCC----------CCccc
Q 024153 50 DKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLA----------GKVLP 119 (271)
Q Consensus 50 ~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~----------~~~~~ 119 (271)
+..+.|++++.|+++++|++++.||++|.|+++++|.+. +.||++|.|+++|+|....+.+. +..+.
T Consensus 119 ~~~v~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~---~~IG~~~~I~~~~vIg~~gfg~~~~~~~~~~~i~~~G~ 195 (324)
T TIGR01853 119 GAGVEIGENVIIGPGVVIGDDVVIGDGSRIHPNVVIYER---VQLGKNVIIHSGAVIGSDGFGYAHTANGGHVKIPQIGR 195 (324)
T ss_pred ccCcEECCcEEECCCCEECCcceeCCCceECCCcEECCC---CEECCCCEECCCcEECCCCccceeccCCcceecCccce
Confidence 333444444444444555555555555555555555533 67778888888888765433211 11246
Q ss_pred eEEcCCcEECcCcEE-----------------------eceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeC
Q 024153 120 TIIGDNVTVGHSAVL-----------------------HGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIP 176 (271)
Q Consensus 120 ~~Ig~~~~i~~~~~i-----------------------~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~ 176 (271)
+.||++|.|+++++| ++|.||++|.|++++.|.++++||++|++|+++.|.++++|+
T Consensus 196 vvIgd~v~IGa~~~I~r~~~~~t~Ig~~~~I~n~v~I~~~v~IG~~~~I~~~~~iag~~~IG~~~~ig~~~~I~~~v~Ig 275 (324)
T TIGR01853 196 VIIEDDVEIGANTTIDRGAFDDTIIGEGTKIDNLVQIAHNCRIGENCIIVAQVGIAGSTKIGRNVIIGGQVGVAGHLEIG 275 (324)
T ss_pred EEECCCcEECCCCEEecCCcCcceecCCcEEccCcEECCCCEECCCcEECCcceEcCccEECCCeEEccccccccCCEEC
Confidence 778888888877766 457777777777888888889999999999999999999999
Q ss_pred CCcEEeccCceEccCCCHHHHH
Q 024153 177 CGEVWGGNPARFLRKLTEEEMA 198 (271)
Q Consensus 177 ~~~vv~G~pa~~~~~~~~~~~~ 198 (271)
+++++++. +.+.+++++..+.
T Consensus 276 ~~~~ig~~-s~V~~~v~~~~~~ 296 (324)
T TIGR01853 276 DNVTIGAK-SGVTKSIPPPGVY 296 (324)
T ss_pred CCCEEccC-CEeCCcCCCCcEE
Confidence 99999776 9999999887764
No 27
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.86 E-value=9.6e-21 Score=159.24 Aligned_cols=139 Identities=19% Similarity=0.267 Sum_probs=91.7
Q ss_pred cCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcC----------------
Q 024153 49 FDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSN---------------- 112 (271)
Q Consensus 49 ~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~---------------- 112 (271)
+++.+.|+++++|+|++.|.+++.||++|.|+++++|..+ +.||++|.|+++++|....++
T Consensus 16 i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~~i~~~---~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 92 (205)
T cd03352 16 IGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEG---CIIGDRVIIHSGAVIGSDGFGFAPDGGGWVKIPQLGG 92 (205)
T ss_pred ECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCC---CEECCCcEECCCCEEcCCCceeEecCCcEEEcCCcce
Confidence 4455555566666666666566666666666666665543 455555555555555321100
Q ss_pred ---------------------CC------------CCccceEEcCCcEECcCcEE-eceeeCCCcEEccCcEEccCcEEC
Q 024153 113 ---------------------LA------------GKVLPTIIGDNVTVGHSAVL-HGCTVEDEAFVGMGATLLDGVYVE 158 (271)
Q Consensus 113 ---------------------~~------------~~~~~~~Ig~~~~i~~~~~i-~~~~Ig~~~~Ig~~~~I~~~v~Ig 158 (271)
.. ...+++.||+++.|+.++.+ +++.||++|+|+.++.|.++++||
T Consensus 93 v~Ig~~~~Ig~~~~i~~~~~~~~~Ig~~~~i~~~v~I~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~ig~~~~v~~~~~ig 172 (205)
T cd03352 93 VIIGDDVEIGANTTIDRGALGDTVIGDGTKIDNLVQIAHNVRIGENCLIAAQVGIAGSTTIGDNVIIGGQVGIAGHLTIG 172 (205)
T ss_pred EEECCCEEECCCCEEeccccCCeEECCCCEECCceEEeCCCEECCCCEECCCCEEccccEECCCeEEcCCCEEeCCcEEC
Confidence 00 00123344444444444444 348999999999999999999999
Q ss_pred CCcEEccCcEecCCceeCCCcEEeccCceEccCC
Q 024153 159 KHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKL 192 (271)
Q Consensus 159 ~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~ 192 (271)
++++|+++|+|.++ ++++.++.|+||++++++
T Consensus 173 ~~~~i~~~s~v~~~--~~~~~~~~G~pa~~~~~~ 204 (205)
T cd03352 173 DGVVIGAGSGVTSI--VPPGEYVSGTPAQPHREW 204 (205)
T ss_pred CCCEEcCCCEEeeE--CCCCCEEEeecCchhhhc
Confidence 99999999999987 999999999999987765
No 28
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=99.86 E-value=5.7e-21 Score=172.67 Aligned_cols=140 Identities=15% Similarity=0.258 Sum_probs=75.6
Q ss_pred CCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCC---------CCccceE
Q 024153 51 KAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLA---------GKVLPTI 121 (271)
Q Consensus 51 ~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~---------~~~~~~~ 121 (271)
+.+.|++++.|+++++|++++.||++|.|+++++|.++ +.||++|.|+++++|....+.+. +..+.+.
T Consensus 129 ~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~---~~Ig~~~~I~~~~~Ig~~~f~~~~~~~~~~~~~~~g~v~ 205 (343)
T PRK00892 129 AGVVIGDGVVIGAGAVIGDGVKIGADCRLHANVTIYHA---VRIGNRVIIHSGAVIGSDGFGFANDRGGWVKIPQLGRVI 205 (343)
T ss_pred ccceeCCCcEECCCCEEcCCcEECCCCEeCCCeEEcCC---CEECCCCEECCCCEEeccCcCcccCCCceeeccccccEE
Confidence 33444444444444444455555555555555555433 55666666666666654322211 0112455
Q ss_pred EcCCcEECcCcEE-----------------------eceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCC
Q 024153 122 IGDNVTVGHSAVL-----------------------HGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCG 178 (271)
Q Consensus 122 Ig~~~~i~~~~~i-----------------------~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~ 178 (271)
||+++.||++++| |+|+||++|+|++++.|.++++||++|+|++++.|.++++|+++
T Consensus 206 Ig~~v~IGa~~~I~~~~~~~t~Ig~~~~i~~~v~I~~~~~IG~~~~i~~~~~i~~~~~iG~~~~ig~~~~i~~~~~ig~~ 285 (343)
T PRK00892 206 IGDDVEIGANTTIDRGALDDTVIGEGVKIDNLVQIAHNVVIGRHTAIAAQVGIAGSTKIGRYCMIGGQVGIAGHLEIGDG 285 (343)
T ss_pred ECCCcEECCCcEEecCccccceeCCCCEEeCCeEEccCCEECCCcEEeeeeeecCCCEECCceEECCCCEEcCCCEECCC
Confidence 5555555555544 33555555555555555666666666666666666666666666
Q ss_pred cEEeccCceEccCCCH
Q 024153 179 EVWGGNPARFLRKLTE 194 (271)
Q Consensus 179 ~vv~G~pa~~~~~~~~ 194 (271)
++++++ +.+.+++++
T Consensus 286 ~~i~~~-s~v~~~i~~ 300 (343)
T PRK00892 286 VTITAM-SGVTKSIPE 300 (343)
T ss_pred CEEecC-CeeCCccCC
Confidence 666555 555555555
No 29
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=99.85 E-value=2e-19 Score=146.51 Aligned_cols=133 Identities=29% Similarity=0.532 Sum_probs=112.7
Q ss_pred CceECCCCEECCCcEEecCeEECCCCEEccCcEEecCC-CceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECc
Q 024153 52 APVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDV-NSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGH 130 (271)
Q Consensus 52 ~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~-~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~ 130 (271)
.+.|+++++|+|++.|.+++.||++|.|+++++|.++. .++.||++|.|+++++|.... .+++.||+++.|++
T Consensus 2 ~~~ig~~~~I~~~a~i~~~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~------~~~v~Ig~~~~I~~ 75 (167)
T cd00710 2 EPVIDPSAYVHPTAVVIGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALE------GYSVWIGKNVSIAH 75 (167)
T ss_pred CCEeCCCeEECCCCEEEeeEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecC------CCCEEECCCceECC
Confidence 46799999999999999999999999999999998642 468999999999999997532 24799999999999
Q ss_pred CcEEec-eeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCC
Q 024153 131 SAVLHG-CTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLT 193 (271)
Q Consensus 131 ~~~i~~-~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~ 193 (271)
++.+.+ +.||++|+||.++.|. +++||++|+|+++|.|. +..|++++++. ..+.+.++.+
T Consensus 76 ~~~i~g~~~Ig~~~~Ig~~~~I~-~~~Ig~~~~Ig~~s~i~-~~~i~~~~~v~-~~~~v~~~~~ 136 (167)
T cd00710 76 GAIVHGPAYIGDNCFIGFRSVVF-NAKVGDNCVIGHNAVVD-GVEIPPGRYVP-AGAVITSQTQ 136 (167)
T ss_pred CCEEeCCEEECCCCEECCCCEEE-CCEECCCCEEcCCCEEe-CCEeCCCCEEC-CCCEEcCCCc
Confidence 999987 9999999999999996 69999999999999995 45788887773 3244433433
No 30
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=99.84 E-value=6.9e-20 Score=165.61 Aligned_cols=144 Identities=18% Similarity=0.264 Sum_probs=115.8
Q ss_pred hhcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCC----------------CceEECCCCEECCCCEEecCC
Q 024153 47 NIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDV----------------NSISIGSGTNIQDNSLVHVAK 110 (271)
Q Consensus 47 ~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~----------------~~~~IG~~~~I~~~~~I~~~~ 110 (271)
..++..+.||+++.|++++.|.+++.||++|.|+++++|..+. +.+.||+++.|+++++|..+.
T Consensus 143 ~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~I~~~~~Ig~~~f~~~~~~~~~~~~~~~g~v~Ig~~v~IGa~~~I~~~~ 222 (343)
T PRK00892 143 AVIGDGVKIGADCRLHANVTIYHAVRIGNRVIIHSGAVIGSDGFGFANDRGGWVKIPQLGRVIIGDDVEIGANTTIDRGA 222 (343)
T ss_pred CEEcCCcEECCCCEeCCCeEEcCCCEECCCCEECCCCEEeccCcCcccCCCceeeccccccEEECCCcEECCCcEEecCc
Confidence 3455667777888888888888899999999999999996431 358999999999999997643
Q ss_pred cCCC------------CCccceEEcCCcEECcCcEEec-eeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCC
Q 024153 111 SNLA------------GKVLPTIIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPC 177 (271)
Q Consensus 111 ~~~~------------~~~~~~~Ig~~~~i~~~~~i~~-~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~ 177 (271)
.... ...|++.||+++.|++++.+.+ ++||++|+||.++.|.++++||++++|+++|.|.++ +++
T Consensus 223 ~~~t~Ig~~~~i~~~v~I~~~~~IG~~~~i~~~~~i~~~~~iG~~~~ig~~~~i~~~~~ig~~~~i~~~s~v~~~--i~~ 300 (343)
T PRK00892 223 LDDTVIGEGVKIDNLVQIAHNVVIGRHTAIAAQVGIAGSTKIGRYCMIGGQVGIAGHLEIGDGVTITAMSGVTKS--IPE 300 (343)
T ss_pred cccceeCCCCEEeCCeEEccCCEECCCcEEeeeeeecCCCEECCceEECCCCEEcCCCEECCCCEEecCCeeCCc--cCC
Confidence 2111 1245666666666666666655 999999999999999999999999999999999998 999
Q ss_pred -CcEEeccCceEccCC
Q 024153 178 -GEVWGGNPARFLRKL 192 (271)
Q Consensus 178 -~~vv~G~pa~~~~~~ 192 (271)
+.++.|+||+.++++
T Consensus 301 ~~~~~~G~pa~~~~~~ 316 (343)
T PRK00892 301 PGEYSSGIPAQPNKEW 316 (343)
T ss_pred CCeEEEeecCchHHHH
Confidence 899999999875543
No 31
>PRK10502 putative acyl transferase; Provisional
Probab=99.83 E-value=2.2e-19 Score=148.26 Aligned_cols=132 Identities=20% Similarity=0.291 Sum_probs=107.6
Q ss_pred hhhhhcCCCceECCCCEECCCcEEec--CeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceE
Q 024153 44 TLMNIFDKAPVVNKDVFLAPSASIIG--DVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTI 121 (271)
Q Consensus 44 ~~~~~~~~~~~i~~~~~I~~~~~i~~--~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~ 121 (271)
.++..++ +.|++++.|++++.|.. ++.||++|.|++++.|.. ...+.||++|.|++++.|....|+.....
T Consensus 45 ~~lr~~g--a~iG~~~~I~~~a~i~~~~~~~IG~~~~Ig~~~~I~~-~~~v~IG~~~~I~~~~~I~~~~h~~~~~~---- 117 (182)
T PRK10502 45 FLLRLFG--AKIGKGVVIRPSVRITYPWKLTIGDYAWIGDDVWLYN-LGEITIGAHCVISQKSYLCTGSHDYSDPH---- 117 (182)
T ss_pred HHHHHhc--cccCCCcEEcCCEEEecCCeEEECCCeEECCCceecc-cCceEECCCcEECCCeEEECCCCCCcCCC----
Confidence 3444554 45899999999998875 599999999999999983 45689999999999999986555321100
Q ss_pred EcCCcEECcCcEEeceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCC
Q 024153 122 IGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKL 192 (271)
Q Consensus 122 Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~ 192 (271)
......+++|||+||||++++|.++++||++++|+++|+|.++ +|++++++|+||+++++.
T Consensus 118 --------~~~~~~~i~Igd~~~Ig~~a~I~~Gv~Ig~~~vIga~svV~~~--v~~~~v~~G~Pa~~ik~r 178 (182)
T PRK10502 118 --------FDLNTAPIVIGEGCWLAADVFVAPGVTIGSGAVVGARSSVFKS--LPANTICRGNPAVPIRPR 178 (182)
T ss_pred --------cccccCCEEEcCCcEEcCCCEEcCCCEECCCCEECCCCEEecc--cCCCcEEECCcceEeccc
Confidence 0112245899999999999999999999999999999999998 999999999999998865
No 32
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=99.82 E-value=2.1e-19 Score=157.05 Aligned_cols=145 Identities=16% Similarity=0.232 Sum_probs=119.7
Q ss_pred hhhcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCC----------------CceEECCCCEECCCCEEecC
Q 024153 46 MNIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDV----------------NSISIGSGTNIQDNSLVHVA 109 (271)
Q Consensus 46 ~~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~----------------~~~~IG~~~~I~~~~~I~~~ 109 (271)
..++++++.||++++|++++.|..++.||++|.|+++++|..+. ++++|||++.||.|++|..+
T Consensus 141 ~~vIg~~~~IG~~~~i~~~v~I~~~~~IG~~v~I~~GavIG~dgFg~a~~~~g~~Ki~q~g~V~Igd~VeIGanT~Idrg 220 (338)
T COG1044 141 GAVIGENVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVIGADGFGYAGTAIGWVKIPQIGRVIIGDDVEIGANTTIDRG 220 (338)
T ss_pred CCEECCCcEECCCcEEcCCCEEecCcEECCceEECCCCEEccCccccccccCCceEcceeceEEECCceEEcccceeccc
Confidence 34677777888888888888888899999999999999997553 57899999999999999887
Q ss_pred CcCCC------------CCccceEEcCCcEECcCcEEec-eeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeC
Q 024153 110 KSNLA------------GKVLPTIIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIP 176 (271)
Q Consensus 110 ~~~~~------------~~~~~~~Ig~~~~i~~~~~i~~-~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~ 176 (271)
..+.. ...|++.||++|.|..++-|.+ +.||++|.||..+.|.++..|+|++.|++.+.|.++ |+
T Consensus 221 a~~dTvIg~~~kIdN~vqIaHnv~IG~~~~I~~~vgIaGs~~IG~~v~igg~vgI~gh~~IgD~~~I~~~~~v~~~--i~ 298 (338)
T COG1044 221 ALDDTVIGEGVKIDNLVQIGHNVRIGEHCIIAGQVGIAGSVKIGKYVIIGGQVGIAGHLEIGDGVTIGARSGVMAS--IT 298 (338)
T ss_pred cccCceecCCcEEcceeEEccccEECCCcEEeccceeeccceECCeEEECcceeecCceEEcCCCEEecccccccc--cC
Confidence 44321 2366777777777777776666 999999999999999999999999999999999998 88
Q ss_pred CCcEEeccCceEccCC
Q 024153 177 CGEVWGGNPARFLRKL 192 (271)
Q Consensus 177 ~~~vv~G~pa~~~~~~ 192 (271)
+...+.|.|++..++|
T Consensus 299 ~~~~~gg~P~~p~k~w 314 (338)
T COG1044 299 EPGYSGGIPAQPIKEW 314 (338)
T ss_pred CCceeccCCCchHHHH
Confidence 8888888988765443
No 33
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=99.82 E-value=8.6e-19 Score=144.43 Aligned_cols=123 Identities=27% Similarity=0.447 Sum_probs=101.6
Q ss_pred CCCEECCCcE--EecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEE
Q 024153 57 KDVFLAPSAS--IIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVL 134 (271)
Q Consensus 57 ~~~~I~~~~~--i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i 134 (271)
.+++|.|.+. ++.++.||+++.|+.+++|. +...++||++|.|+++|+|....|+.+.. ....+..+
T Consensus 58 ~~~~i~~~~~~~~g~~i~iG~~~~in~~~~i~-d~~~I~IGd~v~I~~~v~i~t~~h~~~~~----------~~~~~~~~ 126 (183)
T PRK10092 58 TEAYIEPTFRCDYGYNIFLGNNFYANFDCVML-DVCPIRIGDNCMLAPGVHIYTATHPLDPV----------ARNSGAEL 126 (183)
T ss_pred CCEEEeCCEEEeecCCcEEcCCcEECCceEEe-cCceEEECCCCEECCCCEEEcCCCCCChH----------Hcccccee
Confidence 3678888764 46789999999999999987 55678999999999999999766643221 11122223
Q ss_pred -eceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCC
Q 024153 135 -HGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKL 192 (271)
Q Consensus 135 -~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~ 192 (271)
..+.||++||||++++|.++++||++++|+++|+|.++ ||++++++|+||++++.+
T Consensus 127 ~~~v~IGd~v~IG~~a~I~~gv~IG~~~vIgagsvV~~d--i~~~~i~~G~PAr~i~~~ 183 (183)
T PRK10092 127 GKPVTIGNNVWIGGRAVINPGVTIGDNVVVASGAVVTKD--VPDNVVVGGNPARIIKKL 183 (183)
T ss_pred cCCeEECCCcEECCCCEECCCCEECCCCEECCCCEEccc--cCCCcEEEecCcEEeecC
Confidence 45899999999999999999999999999999999998 999999999999998753
No 34
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=99.81 E-value=5.9e-19 Score=135.46 Aligned_cols=119 Identities=26% Similarity=0.381 Sum_probs=101.4
Q ss_pred ECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEE
Q 024153 55 VNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVL 134 (271)
Q Consensus 55 i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i 134 (271)
|++++.|+++++|.+++.||++|.|++++.|... +.||++|.|++++.+... .+ ....+..++.+
T Consensus 1 ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~---~~Ig~~~~I~~~~~i~~~-----------~~-~~~~~~~~~~~ 65 (119)
T cd03358 1 IGDNCIIGTNVFIENDVKIGDNVKIQSNVSIYEG---VTIEDDVFIGPNVVFTND-----------LY-PRSKIYRKWEL 65 (119)
T ss_pred CCCCCEECCCcEECCCcEECCCcEECCCcEEeCC---eEECCCcEEcCCeEEecC-----------CC-Ccccccccccc
Confidence 4678888888888889999999999999999654 899999999999998632 11 22233346677
Q ss_pred eceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEcc
Q 024153 135 HGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLR 190 (271)
Q Consensus 135 ~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~ 190 (271)
.+++||++|+|+.++.+.+++.|++++.|++++++.++ +|+++++.|+||+.++
T Consensus 66 ~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~i~~~~~v~~~--i~~~~~~~G~pa~~~~ 119 (119)
T cd03358 66 KGTTVKRGASIGANATILPGVTIGEYALVGAGAVVTKD--VPPYALVVGNPARIIG 119 (119)
T ss_pred CCcEECCCcEECcCCEEeCCcEECCCCEEccCCEEeCc--CCCCeEEecCcceecC
Confidence 88999999999999999999999999999999999997 9999999999999764
No 35
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=99.81 E-value=5.5e-19 Score=147.06 Aligned_cols=145 Identities=18% Similarity=0.224 Sum_probs=109.8
Q ss_pred hcCCCceECCCCEECCCcEE----ecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEc
Q 024153 48 IFDKAPVVNKDVFLAPSASI----IGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIG 123 (271)
Q Consensus 48 ~~~~~~~i~~~~~I~~~~~i----~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig 123 (271)
..+....+++++++..++.+ .+.+.||+++.|++++.|.. ...+.||++|.|++++.|....+.... +. ..-
T Consensus 39 ~~~~~I~iG~~v~i~~~~ri~~~~~~~i~IG~~v~Ig~~v~I~~-~~~v~IG~~v~Ig~~v~I~~~~hg~~~--~~-~~~ 114 (192)
T PRK09677 39 RNDGSINFGEGFTSGVGLRLDAFGRGKLFFGDNVQVNDYVHIAC-IESITIGRDTLIASKVFITDHNHGSFK--HS-DDF 114 (192)
T ss_pred cCCCeEEECCceEECCCeEEEecCCCeEEECCCCEECCCcEEcc-CceEEECCCCEECCCeEEECCCCcccc--cc-ccc
Confidence 34666778888888888887 35789999999999998873 345899999999999998764331000 00 000
Q ss_pred CCcEEC---cCcEEeceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHHHH
Q 024153 124 DNVTVG---HSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMA 198 (271)
Q Consensus 124 ~~~~i~---~~~~i~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~~~ 198 (271)
.+..+. ......+++||++|+||.++.|.++++||++|+|+++|+|.++ +|++++++|+||++++.+++....
T Consensus 115 ~~~~~~~~~~~~~~~~v~Ig~~~~ig~~~~i~~g~~Ig~~~~Iga~s~v~~~--i~~~~~~~G~Pa~~ik~~~~~~~~ 190 (192)
T PRK09677 115 SSPNLPPDMRTLESSAVVIGQRVWIGENVTILPGVSIGNGCIVGANSVVTKS--IPENTVIAGNPAKIIKKYNHETKL 190 (192)
T ss_pred cccccChhhcccccCCeEEcCCcEECCCCEEcCCCEECCCCEECCCCEECcc--cCCCcEEEecCCEEEeccCccccc
Confidence 001111 1122356899999999999999999999999999999999997 999999999999999998875543
No 36
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.80 E-value=3.3e-19 Score=145.52 Aligned_cols=122 Identities=25% Similarity=0.469 Sum_probs=100.1
Q ss_pred ECCCCEECCCcEE--ecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCc
Q 024153 55 VNKDVFLAPSASI--IGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSA 132 (271)
Q Consensus 55 i~~~~~I~~~~~i--~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~ 132 (271)
++++++|.+++.+ ..++.||+++.|+++++|. +.+.+.||++|.|+++|+|....+..+. .+.. .+.
T Consensus 45 ~~~~~~i~~~~~~~~~~~i~IG~~v~I~~~~~i~-~~~~i~IG~~v~Ig~~~~I~~~~h~~~~-------~~~~---~~~ 113 (169)
T cd03357 45 VGENVYIEPPFHCDYGYNIHIGDNFYANFNCTIL-DVAPVTIGDNVLIGPNVQIYTAGHPLDP-------EERN---RGL 113 (169)
T ss_pred cCCCCEEcCCEEEEeCCcCEECCCceEcCCEEEe-ccCcEEECCCCEECCCCEEEeCCCCCCh-------hHcc---ccc
Confidence 5778888888665 4579999999999999887 3356999999999999999876553221 1111 122
Q ss_pred -EEeceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEc
Q 024153 133 -VLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFL 189 (271)
Q Consensus 133 -~i~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~ 189 (271)
..++++||++||||.+++|.++++||++|+||++|+|.++ ||+++++.|+||+++
T Consensus 114 ~~~~~v~IG~~~~Ig~~a~I~~gv~Ig~~~~VgagavV~~~--vp~~~vv~G~PAkvi 169 (169)
T cd03357 114 EYAKPITIGDNVWIGGGVIILPGVTIGDNSVIGAGSVVTKD--IPANVVAAGNPARVI 169 (169)
T ss_pred eecCCcEeCCCEEECCCCEEeCCCEECCCCEECCCCEEccc--cCCCcEEEccccEEC
Confidence 2356999999999999999999999999999999999998 999999999999875
No 37
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=99.79 E-value=2.5e-18 Score=135.92 Aligned_cols=129 Identities=17% Similarity=0.246 Sum_probs=108.3
Q ss_pred hhcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCc
Q 024153 47 NIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNV 126 (271)
Q Consensus 47 ~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~ 126 (271)
..+++.+.|++++.|++.+++..++.||+++.|++++.|..+ +.||++|.|++++.|...... ...+++.|++++
T Consensus 8 ~~i~~~~~Ig~~~~I~~~~~i~~~~~IG~~~~I~~~~~I~~~---~~IG~~~~I~~~~~igg~~~~--~~~~~v~Ig~~~ 82 (139)
T cd03350 8 AIIRDGAFIGPGAVLMMPSYVNIGAYVDEGTMVDSWATVGSC---AQIGKNVHLSAGAVIGGVLEP--LQATPVIIEDDV 82 (139)
T ss_pred cEECCCCEECCCCEECCCCEEccCCEECCCeEEcCCCEECCC---CEECCCCEECCCCEECCcccc--cccCCeEECCCC
Confidence 345677778888888888888888889999999988888755 799999999999998753211 123578999999
Q ss_pred EECcCcEE-eceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCC-cEEeccC
Q 024153 127 TVGHSAVL-HGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCG-EVWGGNP 185 (271)
Q Consensus 127 ~i~~~~~i-~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~-~vv~G~p 185 (271)
+|++++.+ .+++||+++.|+++++|.++++|+++ +++++|.++ +|++ ++++|+|
T Consensus 83 ~Ig~~a~I~~gv~Ig~~~~Ig~g~~V~~~~~I~~~---~~~~~v~~~--~~~~~~~~~g~~ 138 (139)
T cd03350 83 FIGANCEVVEGVIVGKGAVLAAGVVLTQSTPIYDR---ETGEIYYGR--VPPGSVVVAGSL 138 (139)
T ss_pred EECCCCEECCCCEECCCCEEcCCCEEcCCeEeccc---CcccEEecc--cCCCCEEecccC
Confidence 99999999 46999999999999999999999998 999999998 9999 8888887
No 38
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=99.79 E-value=3.7e-18 Score=142.21 Aligned_cols=135 Identities=20% Similarity=0.361 Sum_probs=80.8
Q ss_pred cCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCC-------------CceEECCCCEECCCCEEecCCcC---
Q 024153 49 FDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDV-------------NSISIGSGTNIQDNSLVHVAKSN--- 112 (271)
Q Consensus 49 ~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~-------------~~~~IG~~~~I~~~~~I~~~~~~--- 112 (271)
+.+.+.|+++++|+|++.|.+++.||++|.|++++.|.... ..+.||+++.|++++.|.....-
T Consensus 12 ~~~~v~ig~~~~I~~~a~i~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig~~ 91 (193)
T cd03353 12 IDGDVEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGEG 91 (193)
T ss_pred EcCCeEECCCcEECCCCEEeCcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEECCC
Confidence 44556666677777777666666677777666666665320 01223333333333322211000
Q ss_pred ---------------------CCCCccceEEcCCcEECcCcEEe--------ceeeCCCcEEccCcEEccCcEECCCcEE
Q 024153 113 ---------------------LAGKVLPTIIGDNVTVGHSAVLH--------GCTVEDEAFVGMGATLLDGVYVEKHAMV 163 (271)
Q Consensus 113 ---------------------~~~~~~~~~Ig~~~~i~~~~~i~--------~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~I 163 (271)
+....+++.||+++.|++++.+. +++|||+||||.++++.++++||++++|
T Consensus 92 ~~Ig~~~~i~~s~ig~~~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~vigd~~~ig~~~~i~~~~~Ig~~~~i 171 (193)
T cd03353 92 VHIGNFVEIKKSTIGEGSKANHLSYLGDAEIGEGVNIGAGTITCNYDGVNKHRTVIGDNVFIGSNSQLVAPVTIGDGATI 171 (193)
T ss_pred CEECCcEEEecceEcCCCEecccceecccEECCCCEEcCceEEeccCCccccCCEECCCeEEccCCEEeCCcEECCCcEE
Confidence 00011234555566666665552 4678888888888888888888888888
Q ss_pred ccCcEecCCceeCCCcEEeccC
Q 024153 164 AAGALVRQNTKIPCGEVWGGNP 185 (271)
Q Consensus 164 g~~svV~~~~~I~~~~vv~G~p 185 (271)
+++|+|.++ +|+++++.|.|
T Consensus 172 ~~gs~V~~~--v~~~~~v~~~~ 191 (193)
T cd03353 172 AAGSTITKD--VPPGALAIARA 191 (193)
T ss_pred CCCCEEccc--cCCCCEEEecc
Confidence 888888887 88888887764
No 39
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=99.78 E-value=4.8e-18 Score=134.31 Aligned_cols=120 Identities=24% Similarity=0.345 Sum_probs=103.6
Q ss_pred CEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEe---
Q 024153 59 VFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLH--- 135 (271)
Q Consensus 59 ~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~--- 135 (271)
..|+|++.|++++.|++++.|++++.+..+ +.||++|.|+.++.|.. ++.||++|.|++++.+.
T Consensus 2 ~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~---~~IG~~~~I~~~~~I~~----------~~~IG~~~~I~~~~~igg~~ 68 (139)
T cd03350 2 RRVPPGAIIRDGAFIGPGAVLMMPSYVNIG---AYVDEGTMVDSWATVGS----------CAQIGKNVHLSAGAVIGGVL 68 (139)
T ss_pred cccCCCcEECCCCEECCCCEECCCCEEccC---CEECCCeEEcCCCEECC----------CCEECCCCEECCCCEECCcc
Confidence 356777777777778888888888887644 67888899988888863 68899999999999885
Q ss_pred ------ceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHH
Q 024153 136 ------GCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEE 195 (271)
Q Consensus 136 ------~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~ 195 (271)
+++||++|+|+++++|.++++||++++|+++++|.++++|+++ |..+.++|++++.
T Consensus 69 ~~~~~~~v~Ig~~~~Ig~~a~I~~gv~Ig~~~~Ig~g~~V~~~~~I~~~----~~~~~v~~~~~~~ 130 (139)
T cd03350 69 EPLQATPVIIEDDVFIGANCEVVEGVIVGKGAVLAAGVVLTQSTPIYDR----ETGEIYYGRVPPG 130 (139)
T ss_pred cccccCCeEECCCCEECCCCEECCCCEECCCCEEcCCCEEcCCeEeccc----CcccEEecccCCC
Confidence 4899999999999999999999999999999999999999998 7778999998875
No 40
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=99.77 E-value=6.8e-18 Score=144.91 Aligned_cols=113 Identities=20% Similarity=0.366 Sum_probs=85.7
Q ss_pred CCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEE-
Q 024153 56 NKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVL- 134 (271)
Q Consensus 56 ~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i- 134 (271)
..+++|.|++.+..++.||+++.|+++ .+... +.||++|.|..+++|.. ++.||++|.|+.++.|
T Consensus 98 ~~~~rv~p~a~i~~ga~Ig~~vvI~p~-~Vnig---a~IGeGt~I~~~a~IG~----------~v~IG~nv~I~~g~~Ig 163 (269)
T TIGR00965 98 KAGFRVVPGAAVRQGAFIAKNVVLMPS-YVNIG---AYVDEGTMVDTWATVGS----------CAQIGKNVHLSGGVGIG 163 (269)
T ss_pred cCCEEECCCcEECCCcEECCCCEEeee-EEcCC---cEECCCCEECCCcEECC----------CCEECCCCEEcCCcccC
Confidence 346777777777777777777777765 33322 57888888888887763 6788888888888877
Q ss_pred --------eceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCc-------------eeCCCcEEe
Q 024153 135 --------HGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNT-------------KIPCGEVWG 182 (271)
Q Consensus 135 --------~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~-------------~I~~~~vv~ 182 (271)
++++|||+|+||++|.|.++++||++|+||++++|.+++ .||+++++.
T Consensus 164 G~~ep~~~~~ViIgDnv~IGa~a~I~~GV~IG~gavIGaGavI~~~~~I~~~~~g~v~~~~vp~~svv~ 232 (269)
T TIGR00965 164 GVLEPLQANPTIIEDNCFIGARSEIVEGVIVEEGSVISMGVFIGQSTKIYDRETGEIHYGRVPAGSVVV 232 (269)
T ss_pred CCcccCCCCCeEECCCCEECCCCEEcCCCEECCCCEEeCCCEECCCCEEecccCCceeeeecCCCcEEe
Confidence 447888888888888888888888888888888887755 478888886
No 41
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=99.77 E-value=1e-17 Score=139.68 Aligned_cols=115 Identities=34% Similarity=0.588 Sum_probs=104.8
Q ss_pred CCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEe-
Q 024153 57 KDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLH- 135 (271)
Q Consensus 57 ~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~- 135 (271)
..+.+++.+.+.+++.||+++.|+++++|.++ +.||++|.|++++.|.. ++.||+++.|+.++.+.
T Consensus 86 ~~~~i~~~a~i~~~~~ig~~~~i~~~~~i~~~---~~ig~~~~i~~~~~i~~----------~~~ig~~~~i~~~~~i~~ 152 (201)
T TIGR03570 86 FATLIHPSAIVSPSASIGEGTVIMAGAVINPD---VRIGDNVIINTGAIVEH----------DCVIGDYVHIAPGVTLSG 152 (201)
T ss_pred ceEEecCCeEECCCCEECCCCEECCCCEECCC---CEECCCcEECCCCEEcC----------CCEECCCCEECCCCEEeC
Confidence 34677788888888889999999999998755 89999999999999963 78999999999999997
Q ss_pred ceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCc
Q 024153 136 GCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPA 186 (271)
Q Consensus 136 ~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa 186 (271)
++.||++|+|+.++.+.+++.||++|+|+++++|.++ +|++++|.|+||
T Consensus 153 ~~~ig~~~~ig~~~~v~~~~~i~~~~~i~~~~~v~~~--~~~~~~~~g~pa 201 (201)
T TIGR03570 153 GVVIGEGVFIGAGATIIQGVTIGAGAIVGAGAVVTKD--IPDGGVVVGVPA 201 (201)
T ss_pred CcEECCCCEECCCCEEeCCCEECCCCEECCCCEECCc--CCCCCEEEeccC
Confidence 5999999999999999999999999999999999997 999999999997
No 42
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.77 E-value=2.6e-17 Score=133.50 Aligned_cols=121 Identities=19% Similarity=0.264 Sum_probs=110.6
Q ss_pred hcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcE
Q 024153 48 IFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVT 127 (271)
Q Consensus 48 ~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~ 127 (271)
.+.+.+.|++++.|++++.|.+++.||++|.|++++.|.+. +.||++|.|++++.|. ++.|++++.
T Consensus 13 ~i~~~v~ig~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~---~~Ig~~~~I~~~~~i~-----------~siig~~~~ 78 (163)
T cd05636 13 TIKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGY---TVLGDGCVVGNSVEVK-----------NSIIMDGTK 78 (163)
T ss_pred EECCCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCC---CEECCCCEECCCcEEe-----------eeEecCCCE
Confidence 45567889999999999999999999999999999999865 7999999999999997 689999999
Q ss_pred ECcCcEEeceeeCCCcEEccCcEEcc------------------------CcEECCCcEEccCcEecCCceeCCCcEEe
Q 024153 128 VGHSAVLHGCTVEDEAFVGMGATLLD------------------------GVYVEKHAMVAAGALVRQNTKIPCGEVWG 182 (271)
Q Consensus 128 i~~~~~i~~~~Ig~~~~Ig~~~~I~~------------------------~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~ 182 (271)
|++++.+.++.|++++.|++++.+.. ++.||++++|+.++.+.+++.|++++++.
T Consensus 79 I~~~~~i~~siIg~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIg~~~~ig~~~~i~~g~~ig~~~~i~ 157 (163)
T cd05636 79 VPHLNYVGDSVLGENVNLGAGTITANLRFDDKPVKVRLKGERVDTGRRKLGAIIGDGVKTGINVSLNPGVKIGPGSWVY 157 (163)
T ss_pred eccCCEEecCEECCCCEECCCcEEcccCcCCcceEEEecCcceecCCcccCcEEcCCeEECCCcEECCCcEECCCCEEC
Confidence 99999999999999999999998843 68999999999999999999999999985
No 43
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=99.76 E-value=1.3e-17 Score=137.87 Aligned_cols=115 Identities=34% Similarity=0.590 Sum_probs=105.2
Q ss_pred CCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEe
Q 024153 56 NKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLH 135 (271)
Q Consensus 56 ~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~ 135 (271)
.....+++.+.+.+++.+|.++.|+++++|..+ ++||++|.|++++.|.. ++.||++|.|+.++.+.
T Consensus 82 ~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~---~~ig~~~~i~~~~~i~~----------~~~ig~~~~i~~~~~i~ 148 (197)
T cd03360 82 RFATLIHPSAVVSPSAVIGEGCVIMAGAVINPD---ARIGDNVIINTGAVIGH----------DCVIGDFVHIAPGVVLS 148 (197)
T ss_pred ccceEECCCeEECCCCEECCCCEEcCCCEECCC---CEECCCeEECCCCEECC----------CCEECCCCEECCCCEEc
Confidence 345678888888888999999999999999865 89999999999999963 78999999999999996
Q ss_pred c-eeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccC
Q 024153 136 G-CTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNP 185 (271)
Q Consensus 136 ~-~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~p 185 (271)
+ ++||++|+||.++.|.++++||++++|+++++|.++ +++++++.|+|
T Consensus 149 ~~~~ig~~~~ig~~~~v~~~~~ig~~~~v~~~~~v~~~--~~~~~~~~g~p 197 (197)
T cd03360 149 GGVTIGEGAFIGAGATIIQGVTIGAGAIIGAGAVVTKD--VPDGSVVVGNP 197 (197)
T ss_pred CCcEECCCCEECCCCEEcCCCEECCCCEECCCCEEcCC--CCCCCEEEecC
Confidence 5 999999999999999999999999999999999998 99999999987
No 44
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=99.76 E-value=1.6e-17 Score=131.98 Aligned_cols=128 Identities=26% Similarity=0.368 Sum_probs=95.7
Q ss_pred eEECCCCEEcc-CcEEecCCCceEECCCCEECCCCEEecC-CcCCCC-CccceEEcCCcE-----ECcCcEEeceeeCCC
Q 024153 71 VQVGRGSSIWY-GCVLRGDVNSISIGSGTNIQDNSLVHVA-KSNLAG-KVLPTIIGDNVT-----VGHSAVLHGCTVEDE 142 (271)
Q Consensus 71 v~IG~~~~I~~-~~~I~~~~~~~~IG~~~~I~~~~~I~~~-~~~~~~-~~~~~~Ig~~~~-----i~~~~~i~~~~Ig~~ 142 (271)
+.||+++.|++ .+.+.. ..+.||++|.|++++.|... .|++.. ...+..++++.. ........+++||++
T Consensus 2 ~~iG~~s~i~~~~~~~~~--~~i~IG~~~~I~~~v~i~~~~~H~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~Ig~~ 79 (145)
T cd03349 2 ISVGDYSYGSGPDCDVGG--DKLSIGKFCSIAPGVKIGLGGNHPTDWVSTYPFYIFGGEWEDDAKFDDWPSKGDVIIGND 79 (145)
T ss_pred EEEeCceeeCCCCceEeC--CCeEECCCCEECCCCEECCCCCCCCCCccccceEeeccccccccccccccccCCcEECCC
Confidence 46788888887 444442 45899999999999999877 554331 112233333221 122233456999999
Q ss_pred cEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccC-CCHHHHHHHHH
Q 024153 143 AFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRK-LTEEEMAFISQ 202 (271)
Q Consensus 143 ~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~-~~~~~~~~~~~ 202 (271)
|+||.++.|.++++||++|+|+++|+|.++ +|++++++|+||++++. ++++.+..+.+
T Consensus 80 ~~Ig~~~~i~~gv~Ig~~~vIgags~V~~~--v~~~~v~~G~Pa~~i~~~~~~~~~~~~~~ 138 (145)
T cd03349 80 VWIGHGATILPGVTIGDGAVIAAGAVVTKD--VPPYAIVGGNPAKVIRYRFDEETIERLLA 138 (145)
T ss_pred CEECCCCEEeCCCEECCCCEECCCCEEccc--cCCCeEEEecCCEeehhhCCHHHHHHHHH
Confidence 999999999999999999999999999998 99999999999999986 66666655543
No 45
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.76 E-value=2.3e-17 Score=138.69 Aligned_cols=61 Identities=8% Similarity=0.167 Sum_probs=51.3
Q ss_pred ceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHHH
Q 024153 136 GCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEM 197 (271)
Q Consensus 136 ~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~~ 197 (271)
++.||++++|+.++.+.++++||++|+|+++++|.++++|++++++.+. +.+.+++++..+
T Consensus 132 ~~~ig~~~~i~~~~~i~~~~~Ig~~~~ig~~~~v~~~~~ig~~~~i~~~-s~v~~~~~~~~~ 192 (205)
T cd03352 132 NVRIGENCLIAAQVGIAGSTTIGDNVIIGGQVGIAGHLTIGDGVVIGAG-SGVTSIVPPGEY 192 (205)
T ss_pred CCEECCCCEECCCCEEccccEECCCeEEcCCCEEeCCcEECCCCEEcCC-CEEeeECCCCCE
Confidence 4677777777777777788999999999999999999999999998765 888888877665
No 46
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=99.75 E-value=1.4e-17 Score=155.62 Aligned_cols=142 Identities=23% Similarity=0.347 Sum_probs=98.2
Q ss_pred cCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCC-------------CceEECCCCEECCCCEEecCCc----
Q 024153 49 FDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDV-------------NSISIGSGTNIQDNSLVHVAKS---- 111 (271)
Q Consensus 49 ~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~-------------~~~~IG~~~~I~~~~~I~~~~~---- 111 (271)
+++.+.|++++.|++++.|.+++.||++|.|++++.|.+.. .++.||++|.|++++.|.....
T Consensus 258 i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~ 337 (451)
T TIGR01173 258 IRGTVEIGRDVEIDPNVILEGKVKIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGAG 337 (451)
T ss_pred ECCccEECCCCEEcCCeEEeCceEECCCCEECCCcEEeeeEecCCCEEeeecEEecccccCCcEECCeeEECCCCEECCC
Confidence 45667788899999999999889999999998888876320 0122333333333333221100
Q ss_pred --CC-----------C-------CCccceEEcCCcEECcCcEEe--------ceeeCCCcEEccCcEEccCcEECCCcEE
Q 024153 112 --NL-----------A-------GKVLPTIIGDNVTVGHSAVLH--------GCTVEDEAFVGMGATLLDGVYVEKHAMV 163 (271)
Q Consensus 112 --~~-----------~-------~~~~~~~Ig~~~~i~~~~~i~--------~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~I 163 (271)
.. . ...+++.||++|.|+.++.+. +++|||+||||.++.|.++++||++++|
T Consensus 338 ~~Ig~~~~i~~~~ig~~~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~~i 417 (451)
T TIGR01173 338 VHIGNFVETKNARIGKGSKAGHLSYLGDAEIGSNVNIGAGTITCNYDGANKHKTIIGDGVFIGSNTQLVAPVKVGDGATI 417 (451)
T ss_pred cEEccceeecCcEECCCcEecceeeEeeeEEcCCcEECCCeEEeCcccccCCCCEECCCcEECCCCEEECCcEECCCCEE
Confidence 00 0 001246667777777777663 4889999999999999999999999999
Q ss_pred ccCcEecCCceeCCCcEEeccCceEc-cCC
Q 024153 164 AAGALVRQNTKIPCGEVWGGNPARFL-RKL 192 (271)
Q Consensus 164 g~~svV~~~~~I~~~~vv~G~pa~~~-~~~ 192 (271)
+++|+|.++ ||+++++.|.|+... +++
T Consensus 418 ~~g~~v~~~--v~~~~~~~~~~~~~~~~~~ 445 (451)
T TIGR01173 418 AAGSTVTKD--VPEGALAISRARQRNIEGW 445 (451)
T ss_pred ccCCEECcc--CCCCcEEEccCceeecccc
Confidence 999999998 999999998776554 444
No 47
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=99.74 E-value=3.4e-17 Score=123.66 Aligned_cols=105 Identities=23% Similarity=0.318 Sum_probs=84.9
Q ss_pred CeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEeceeeCCCcEEccCc
Q 024153 70 DVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGA 149 (271)
Q Consensus 70 ~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~ 149 (271)
++.||+++.|+++++|.. ...++||++|.|++++.|....|.+ ...+.. .....+.||++|||+.++
T Consensus 3 ~i~iG~~~~I~~~~~i~~-~~~i~IG~~~~I~~~~~I~~~~h~~-------~~~~~~-----~~~~~v~Ig~~~~ig~~~ 69 (107)
T cd05825 3 NLTIGDNSWIGEGVWIYN-LAPVTIGSDACISQGAYLCTGSHDY-------RSPAFP-----LITAPIVIGDGAWVAAEA 69 (107)
T ss_pred eEEECCCCEECCCCEEee-CCceEECCCCEECCCeEeecCCCCC-------CcCccc-----eecCCEEECCCCEECCCC
Confidence 467888888888888873 3568999999999999997654421 111111 122458999999999999
Q ss_pred EEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEc
Q 024153 150 TLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFL 189 (271)
Q Consensus 150 ~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~ 189 (271)
.|.++++||++|+|+++|+|.++ +++++++.|+||+++
T Consensus 70 ~i~~g~~Ig~~~~i~~gs~v~~~--~~~~~~~~G~Pa~~~ 107 (107)
T cd05825 70 FVGPGVTIGEGAVVGARSVVVRD--LPAWTVYAGNPAVPV 107 (107)
T ss_pred EECCCCEECCCCEECCCCEEeCc--CCCCCEEECCccEeC
Confidence 99999999999999999999998 999999999999874
No 48
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=99.73 E-value=2.3e-17 Score=147.46 Aligned_cols=135 Identities=21% Similarity=0.362 Sum_probs=107.1
Q ss_pred hcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCC-------------CceEECCCCEECCCCEEecCCcCCC
Q 024153 48 IFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDV-------------NSISIGSGTNIQDNSLVHVAKSNLA 114 (271)
Q Consensus 48 ~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~-------------~~~~IG~~~~I~~~~~I~~~~~~~~ 114 (271)
++...+.|+.++.|.|++.|.|++.||++|.|+++|+|.... ....||++|.||+++.+.+++.-..
T Consensus 264 ~i~~dv~ig~DvvI~p~v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~~~VGPfA~LRPg~~L~~ 343 (460)
T COG1207 264 YIRGDVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAVLGA 343 (460)
T ss_pred EEcCcEEECCceEEecCcEEeeeEEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCCcccCCccccCCcCcccC
Confidence 567788899999999999999999999999999998776321 2344555566665555554432110
Q ss_pred ------------------------CCccceEEcCCcEECcCcEEec--------eeeCCCcEEccCcEEccCcEECCCcE
Q 024153 115 ------------------------GKVLPTIIGDNVTVGHSAVLHG--------CTVEDEAFVGMGATLLDGVYVEKHAM 162 (271)
Q Consensus 115 ------------------------~~~~~~~Ig~~~~i~~~~~i~~--------~~Ig~~~~Ig~~~~I~~~v~Ig~~~~ 162 (271)
...+++.||++|.||++++..+ ++|||+++||+++.+...++||+++.
T Consensus 344 ~~hIGNFVEvK~a~ig~gsKa~HLtYlGDA~iG~~~NiGAGtItcNYDG~nK~~T~IGd~vFiGSns~LVAPV~IGd~a~ 423 (460)
T COG1207 344 DVHIGNFVEVKKATIGKGSKAGHLTYLGDAEIGENVNIGAGTITCNYDGKNKFKTIIGDNVFIGSNSQLVAPVTIGDGAT 423 (460)
T ss_pred CCeEeeeEEEecccccCCccccceeeeccceecCCceeccceEEEcCCCcccceeeecCCcEEccCCcEEeeEEecCCcE
Confidence 1156778888888888887733 99999999999999999999999999
Q ss_pred EccCcEecCCceeCCCcEEecc
Q 024153 163 VAAGALVRQNTKIPCGEVWGGN 184 (271)
Q Consensus 163 Ig~~svV~~~~~I~~~~vv~G~ 184 (271)
||+||+|++| ||++++..+.
T Consensus 424 iaAGStIT~D--Vp~~aLai~R 443 (460)
T COG1207 424 IAAGSTITKD--VPEGALAISR 443 (460)
T ss_pred EcccceEccc--CCCCceeEee
Confidence 9999999999 9999998865
No 49
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.73 E-value=8.9e-18 Score=157.01 Aligned_cols=134 Identities=19% Similarity=0.339 Sum_probs=80.3
Q ss_pred CCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCc------------------C
Q 024153 51 KAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKS------------------N 112 (271)
Q Consensus 51 ~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~------------------~ 112 (271)
+.+.|++++.|++++.|++++.||++|.|++++.|.+ +.||++|.|++++.|..... .
T Consensus 267 ~~~~I~~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~----~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~ 342 (446)
T PRK14353 267 YDTVIGRDVVIEPNVVFGPGVTVASGAVIHAFSHLEG----AHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKLG 342 (446)
T ss_pred CceEECCCCEECCCCEECCCCEECCCCEECCCeEEec----cEECCCcEECCCeEEeccceecCCeEEcCceEEeceEEC
Confidence 4455666666666666666666666666655554432 34444444444444431100 0
Q ss_pred ------CCCCccceEEcCCcEECcCcEE--------eceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCC
Q 024153 113 ------LAGKVLPTIIGDNVTVGHSAVL--------HGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCG 178 (271)
Q Consensus 113 ------~~~~~~~~~Ig~~~~i~~~~~i--------~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~ 178 (271)
+.....++.||++|.|++++++ +++.||++|+||++++|.++++||++++||++|+|.++ +|++
T Consensus 343 ~~~~i~~~~~i~~~~ig~~~~Ig~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~Ig~~~~ig~~s~v~~~--v~~~ 420 (446)
T PRK14353 343 EGAKVNHLTYIGDATIGAGANIGAGTITCNYDGFNKHRTEIGAGAFIGSNSALVAPVTIGDGAYIASGSVITED--VPDD 420 (446)
T ss_pred CCCEECCeeEEcCcEEcCCcEECCceeeeccccccCCCcEECCCcEECCCCEEeCCCEECCCCEECCCCEECcc--CCCC
Confidence 0001234566677777776654 24777788888888878777888888888888888777 7787
Q ss_pred cEEeccCceEcc
Q 024153 179 EVWGGNPARFLR 190 (271)
Q Consensus 179 ~vv~G~pa~~~~ 190 (271)
+++.|.|....+
T Consensus 421 ~~~~g~~~~~~~ 432 (446)
T PRK14353 421 ALALGRARQETK 432 (446)
T ss_pred CEEEecCceEec
Confidence 777777665543
No 50
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.73 E-value=4.7e-17 Score=152.20 Aligned_cols=141 Identities=18% Similarity=0.262 Sum_probs=102.6
Q ss_pred hcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecC----CC--------ceEECCCCEECCCCEEecCC-----
Q 024153 48 IFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGD----VN--------SISIGSGTNIQDNSLVHVAK----- 110 (271)
Q Consensus 48 ~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~----~~--------~~~IG~~~~I~~~~~I~~~~----- 110 (271)
.+++.+.|++++.|+|++.|.+++.||++|.|+++++|... .. ...||+++.|++++.|....
T Consensus 251 ~i~~~~~Ig~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~s~Ig~~~~I~~~~v~~sii~~~~~ig~~~~i~~~~~ig~~ 330 (448)
T PRK14357 251 YIHYDVEIGMDTIIYPMTFIEGKTRIGEDCEIGPMTRIVDCEIGNNVKIIRSECEKSVIEDDVSVGPFSRLREGTVLKKS 330 (448)
T ss_pred EEccceEECCCcEEcCCcEEEeeeEECCCcEECCCceecccEECCCCEEeeeEEEEEEEeCCcEECCCcEECCcccccCC
Confidence 45667778888888888888888888888888888765311 00 11222233333333321100
Q ss_pred ------------------c-CCCCCccceEEcCCcEECcCcEE--------eceeeCCCcEEccCcEEccCcEECCCcEE
Q 024153 111 ------------------S-NLAGKVLPTIIGDNVTVGHSAVL--------HGCTVEDEAFVGMGATLLDGVYVEKHAMV 163 (271)
Q Consensus 111 ------------------~-~~~~~~~~~~Ig~~~~i~~~~~i--------~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~I 163 (271)
. .+.....++.||++|.|++++.+ ++++|||+++||.+++|.++++||++++|
T Consensus 331 ~~Ig~~~~i~~~~ig~~~~~~~~~~~~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~gv~Ig~~~~i 410 (448)
T PRK14357 331 VKIGNFVEIKKSTIGENTKAQHLTYLGDATVGKNVNIGAGTITCNYDGKKKNPTFIEDGAFIGSNSSLVAPVRIGKGALI 410 (448)
T ss_pred cEecCceeeeccEEcCCcCccccccccCcEECCCcEECCCcccccccccccCCcEECCCCEECCCCEEeCCcEECCCCEE
Confidence 0 00011236788899999988876 35999999999999999999999999999
Q ss_pred ccCcEecCCceeCCCcEEeccCceEcc
Q 024153 164 AAGALVRQNTKIPCGEVWGGNPARFLR 190 (271)
Q Consensus 164 g~~svV~~~~~I~~~~vv~G~pa~~~~ 190 (271)
+++|+|.++ ||+++++.|+|.++++
T Consensus 411 ~ag~~v~~~--v~~~~~~~g~~~~~~~ 435 (448)
T PRK14357 411 GAGSVITED--VPPYSLALGRARQIVK 435 (448)
T ss_pred cCCCEECCc--CCCCcEEEccccEEec
Confidence 999999998 9999999999998875
No 51
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.73 E-value=6.4e-17 Score=152.70 Aligned_cols=145 Identities=19% Similarity=0.322 Sum_probs=108.8
Q ss_pred hcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecC------------CCceEECCCCEECCCCEEecC------
Q 024153 48 IFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGD------------VNSISIGSGTNIQDNSLVHVA------ 109 (271)
Q Consensus 48 ~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~------------~~~~~IG~~~~I~~~~~I~~~------ 109 (271)
++.+.+.|++++.|+|++.|.+++.||++|.|+++++|.+. ..++.||++|.|++++.+...
T Consensus 267 ~i~~~v~ig~~~~I~~~~~i~~~v~Ig~~~~I~~~~~i~~~~Ig~~~~i~~~~~~~~iIg~~~~Ig~~~~i~~~~vIg~~ 346 (482)
T PRK14352 267 WIDVDVTIGRDVVIHPGTQLLGRTTIGEDAVVGPDTTLTDVTVGEGASVVRTHGSESEIGAGATVGPFTYLRPGTVLGEE 346 (482)
T ss_pred EEeCCEEECCCcEEeCCcEEeecCEECCCCEECCCCEEecCEECCCCEEeeeeeecCEEcCCCEECCCeEecCCcEEcCC
Confidence 34567789999999999999999999999999998887631 012334444444444443321
Q ss_pred Cc--C----------------CCCCccceEEcCCcEECcCcEEe--------ceeeCCCcEEccCcEEccCcEECCCcEE
Q 024153 110 KS--N----------------LAGKVLPTIIGDNVTVGHSAVLH--------GCTVEDEAFVGMGATLLDGVYVEKHAMV 163 (271)
Q Consensus 110 ~~--~----------------~~~~~~~~~Ig~~~~i~~~~~i~--------~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~I 163 (271)
.. . +....+++.||++|.||+++.+. ++.|||+|+||.++.|.++++||++++|
T Consensus 347 ~~ig~~~~~~~~~I~~~~~i~~~~~i~~~~Ig~~~~IG~~~~i~~~~~~~~~~~~IGd~~~iG~~~~i~~~~~Ig~~~~i 426 (482)
T PRK14352 347 GKLGAFVETKNATIGRGTKVPHLTYVGDADIGEHSNIGASSVFVNYDGVNKHRTTIGSHVRTGSDTMFVAPVTVGDGAYT 426 (482)
T ss_pred CEECCcEEEcccEECCCcEEccCceecccEECCCcEECCCcEEeccccccCCCCeECCCcEECCCCEEeCCCEECCCcEE
Confidence 10 0 00112467888999999998774 3899999999999999999999999999
Q ss_pred ccCcEecCCceeCCCcEE-eccCceEccCCCH
Q 024153 164 AAGALVRQNTKIPCGEVW-GGNPARFLRKLTE 194 (271)
Q Consensus 164 g~~svV~~~~~I~~~~vv-~G~pa~~~~~~~~ 194 (271)
+++|+|.++ |++++++ .|.|++.++.+.+
T Consensus 427 gags~v~~~--v~~~~~~~~~~p~~~~~~~~~ 456 (482)
T PRK14352 427 GAGTVIRED--VPPGALAVSEGPQRNIEGWVQ 456 (482)
T ss_pred CCCCEEcCC--CCCCcEEEecccccccccccc
Confidence 999999998 8999875 4899999887643
No 52
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=99.73 E-value=3.4e-17 Score=125.18 Aligned_cols=140 Identities=16% Similarity=0.316 Sum_probs=125.0
Q ss_pred CeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCC--CCccceEEcCCcEECcCcEEeceeeCCCcEEcc
Q 024153 70 DVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLA--GKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGM 147 (271)
Q Consensus 70 ~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~--~~~~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~ 147 (271)
++.+.-.+++.++++|+||..++.||++|.+++++.|...-..|+ ....+..||++++|++.|++....||..+.+|.
T Consensus 33 NI~lnGKtIv~~g~iIRGDLAnVr~GryCV~ksrsvIRPp~K~FSKg~affp~hiGdhVFieE~cVVnAAqIgsyVh~Gk 112 (184)
T KOG3121|consen 33 NILLNGKTIVEEGVIIRGDLANVRIGRYCVLKSRSVIRPPMKIFSKGPAFFPVHIGDHVFIEEECVVNAAQIGSYVHLGK 112 (184)
T ss_pred eEEEcCcEEEeeCcEEecccccceEcceEEeccccccCCchHHhcCCceeeeeeecceEEEecceEeehhhheeeeEecc
Confidence 567878888999999999999999999999999999987554443 235688999999999999999999999999999
Q ss_pred CcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHHHHHHHHHHHHHHH
Q 024153 148 GATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINYSN 209 (271)
Q Consensus 148 ~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~~~~~~~~~~~~~~ 209 (271)
+++|+.+|++.|.|.|-.++++.+++.+|+++.++|+|+.+....|......+-...+.|++
T Consensus 113 naviGrrCVlkdCc~ild~tVlPpet~vppy~~~~g~p~~~~G~~P~ctq~lMi~~tksyY~ 174 (184)
T KOG3121|consen 113 NAVIGRRCVLKDCCRILDDTVLPPETLVPPYSTIGGNPAQVVGTEPRCTQNLMIEATKSYYD 174 (184)
T ss_pred ceeEcCceEhhhheeccCCcccCcccccCCceEEcCCCceeeccCchhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988887776666666654
No 53
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=99.73 E-value=6.5e-17 Score=134.20 Aligned_cols=132 Identities=22% Similarity=0.323 Sum_probs=102.3
Q ss_pred ECCCCEECCCcEE--e-cCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcC
Q 024153 55 VNKDVFLAPSASI--I-GDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHS 131 (271)
Q Consensus 55 i~~~~~I~~~~~i--~-~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~ 131 (271)
....+.+.+...+ + ..+.+|.+|.++.++.+. ....++||+++.++++|.|....|..+.. .. ..+..
T Consensus 49 ~~~~~~i~~~~~~~~~~~~~~iG~~~~i~~~~~~~-~~~~i~ig~~~~i~~~v~i~~~~h~~~~~-------~~-~~~~~ 119 (190)
T COG0110 49 IGEVAVIRPPVRIDLGEKNLTIGDLCFIGVNVVIL-VGEGITIGDNVVVGPNVTIYTNSHPGDFV-------TA-NIGAL 119 (190)
T ss_pred cCCccEECCCEEEecCCcceEECCeeEEcCCcEEE-ecCCeEECCCceECCCcEEecCCCCCChh-------hc-ccCCc
Confidence 4444666666555 3 578999999999999975 44668999999999999999765532111 00 00112
Q ss_pred cEEeceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHHH
Q 024153 132 AVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEM 197 (271)
Q Consensus 132 ~~i~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~~ 197 (271)
.....++||++||||++++|++|++||++++||++|+|++| +|+++++.|+||++++.......
T Consensus 120 ~~~~~v~IG~~vwIG~~a~IlpGV~IG~gavigagsVVtkd--vp~~~iv~G~Pa~vir~~~~~~~ 183 (190)
T COG0110 120 VGAGPVTIGEDVWIGAGAVILPGVTIGEGAVIGAGSVVTKD--VPPYGIVAGNPARVIRKRDVVAK 183 (190)
T ss_pred eecCCeEECCCeEEcCccEECCCEEECCCcEEeeCCEEeCc--cCCCeEEeCCcceEEEecchhhh
Confidence 22345999999999999999999999999999999999998 99999999999999987655443
No 54
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=99.72 E-value=6e-17 Score=140.27 Aligned_cols=86 Identities=24% Similarity=0.379 Sum_probs=69.4
Q ss_pred eEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEeceeeCCCcEEccCcEEccCcEECCCcEEccCcEecC
Q 024153 92 ISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQ 171 (271)
Q Consensus 92 ~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~ 171 (271)
++||++|.||++|+|.. +++||... ..+....++||++|+||++|+|.++++||++++||++|+|.+
T Consensus 162 ivIG~~a~IGdnv~I~~----------~VtiGg~~---~~~~~~~p~IGd~V~IGaga~Ilggv~IG~~a~IGAgSvV~~ 228 (273)
T PRK11132 162 IVIGETAVIENDVSILQ----------SVTLGGTG---KTSGDRHPKIREGVMIGAGAKILGNIEVGRGAKIGAGSVVLQ 228 (273)
T ss_pred eEECCCCEECCCCEEcC----------CcEEecCc---ccCCCcCCEECCCcEEcCCCEEcCCCEECCCCEECCCCEECc
Confidence 67777777777777752 45555421 111123479999999999999999999999999999999999
Q ss_pred CceeCCCcEEeccCceEccCC
Q 024153 172 NTKIPCGEVWGGNPARFLRKL 192 (271)
Q Consensus 172 ~~~I~~~~vv~G~pa~~~~~~ 192 (271)
+ ||+++++.|+||++++..
T Consensus 229 d--Vp~~~~v~G~PArvi~~~ 247 (273)
T PRK11132 229 P--VPPHTTAAGVPARIVGKP 247 (273)
T ss_pred c--cCCCcEEEecCcEEeCcc
Confidence 8 999999999999998754
No 55
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=99.72 E-value=8.5e-17 Score=139.26 Aligned_cols=79 Identities=29% Similarity=0.512 Sum_probs=47.0
Q ss_pred ceEEcCCcEECcCcEEec---------eeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCce-------------eC
Q 024153 119 PTIIGDNVTVGHSAVLHG---------CTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTK-------------IP 176 (271)
Q Consensus 119 ~~~Ig~~~~i~~~~~i~~---------~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~-------------I~ 176 (271)
.+.||++|+|++++.+++ ++|||+|+||.++.|..+++||++|+|+++++|.+++. ||
T Consensus 150 ~a~IG~nv~I~~gv~I~g~~~~~~~~~viIgDnv~IGa~s~I~~Gv~IGdgavIgag~vV~~gt~I~~~~~g~v~~g~vp 229 (272)
T PRK11830 150 CAQIGKNVHLSGGVGIGGVLEPLQANPVIIEDNCFIGARSEVVEGVIVEEGSVLGMGVFLGQSTKIYDRETGEVHYGRVP 229 (272)
T ss_pred CCEECCCcEECCCccCCCCccccCcCCeEEcCCCEECCCCEEcCCCEECCCCEEcCCCEEcCCeEECcCCCCcEEeeecC
Confidence 445555555555555432 55666666666666655566666665555555554332 67
Q ss_pred CCcEEe-c-----------cCceEccCCCHHHH
Q 024153 177 CGEVWG-G-----------NPARFLRKLTEEEM 197 (271)
Q Consensus 177 ~~~vv~-G-----------~pa~~~~~~~~~~~ 197 (271)
+++++. | .||++++.++....
T Consensus 230 ~~svvv~g~~~~~~~~~~~~~~~i~~~~~~~~~ 262 (272)
T PRK11830 230 AGSVVVPGSLPSKDGGYSLYCAVIVKKVDAKTR 262 (272)
T ss_pred CCcEEecCcccccCCCcCCcCcEEEEEccccch
Confidence 787776 6 37888887765544
No 56
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.71 E-value=1.3e-16 Score=149.52 Aligned_cols=138 Identities=25% Similarity=0.355 Sum_probs=96.4
Q ss_pred ceECCCCEECCCcEEecCeEECCCCEEccCcEEecCC-------------CceEECCCCEECCCCEEecCCcC-------
Q 024153 53 PVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDV-------------NSISIGSGTNIQDNSLVHVAKSN------- 112 (271)
Q Consensus 53 ~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~-------------~~~~IG~~~~I~~~~~I~~~~~~------- 112 (271)
+.+++++.|++++.|.+++.||++|.|+++++|.+.. .++.||++|.|++++.|.....-
T Consensus 266 ~~ig~~~~I~~~~~i~~~v~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~ig 345 (456)
T PRK09451 266 LTHGRDVEIDTNVIIEGNVTLGNRVKIGAGCVLKNCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAEGAHVG 345 (456)
T ss_pred EEECCCCEEcCCeEEecCcEECCCCEECCCceEecCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEECCCceec
Confidence 4567788888888887778888888887777775210 01223333333333333221100
Q ss_pred -----------------CCCCccceEEcCCcEECcCcEEe--------ceeeCCCcEEccCcEEccCcEECCCcEEccCc
Q 024153 113 -----------------LAGKVLPTIIGDNVTVGHSAVLH--------GCTVEDEAFVGMGATLLDGVYVEKHAMVAAGA 167 (271)
Q Consensus 113 -----------------~~~~~~~~~Ig~~~~i~~~~~i~--------~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~s 167 (271)
+....+++.||++|.||+++.+. +++|||+|+||.++.|.++++||++++|+++|
T Consensus 346 ~~~~i~~~~i~~~~~~~~~~~~g~~~ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~~i~~gs 425 (456)
T PRK09451 346 NFVEMKKARLGKGSKAGHLTYLGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIGAGT 425 (456)
T ss_pred cceeeeceeeCCCCccCccccccccEECCCCEEcCCeEEecccCcccCCCEECCCcEECCCCEEeCCcEECCCCEECCCC
Confidence 00112356788888888887663 37899999999999999999999999999999
Q ss_pred EecCCceeCCCcEEe-ccCceEccCC
Q 024153 168 LVRQNTKIPCGEVWG-GNPARFLRKL 192 (271)
Q Consensus 168 vV~~~~~I~~~~vv~-G~pa~~~~~~ 192 (271)
+|.++ ||+++++. |.|++.++++
T Consensus 426 ~v~~~--v~~~~~~~~~~~~~~~~~~ 449 (456)
T PRK09451 426 TVTRD--VAENELVISRVPQRHIQGW 449 (456)
T ss_pred EEccc--cCCCCEEEeccCceecccc
Confidence 99998 99999885 5788888665
No 57
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.71 E-value=2.3e-16 Score=148.14 Aligned_cols=135 Identities=25% Similarity=0.473 Sum_probs=100.6
Q ss_pred hcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcC---------------
Q 024153 48 IFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSN--------------- 112 (271)
Q Consensus 48 ~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~--------------- 112 (271)
.+++.+.|++++.|+|++.|.+++.||++|.|+++++|.+ +.||++|.|++++++....-.
T Consensus 264 ~i~~~v~ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~----~~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i~~~~ 339 (459)
T PRK14355 264 YIDRGVVIGRDTTIYPGVCISGDTRIGEGCTIEQGVVIKG----CRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRPGT 339 (459)
T ss_pred EECCCeEEcCCCEEeCCcEEeCCCEECCCCEECCCCEEeC----CEEcCCCEECCCeEEeCCEECCCCEECCCCEECCCC
Confidence 3556677888888889999999999999999999988863 466666655555544321000
Q ss_pred --------------------------CCCCccceEEcCCcEECcCcEE--------eceeeCCCcEEccCcEEccCcEEC
Q 024153 113 --------------------------LAGKVLPTIIGDNVTVGHSAVL--------HGCTVEDEAFVGMGATLLDGVYVE 158 (271)
Q Consensus 113 --------------------------~~~~~~~~~Ig~~~~i~~~~~i--------~~~~Ig~~~~Ig~~~~I~~~v~Ig 158 (271)
+....+++.||++|.||+++.+ +++.||++|+||.++.|.++++||
T Consensus 340 ~i~~~~~ig~~~~~~~~~ig~~~~~~~~~~ig~~~ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig 419 (459)
T PRK14355 340 ELSAHVKIGNFVETKKIVMGEGSKASHLTYLGDATIGRNVNIGCGTITCNYDGVKKHRTVIEDDVFVGSDVQFVAPVTVG 419 (459)
T ss_pred EeCCCCEECCCccccCCEECCCceeeeeccccCCEECCCCEEccceeecCcCCccccCcEecCCeEEcCCCEEeCCcEEC
Confidence 0001234577777888877765 247899999999999999999999
Q ss_pred CCcEEccCcEecCCceeCCCcEEeccCceE
Q 024153 159 KHAMVAAGALVRQNTKIPCGEVWGGNPARF 188 (271)
Q Consensus 159 ~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~ 188 (271)
++++|+++|+|.++ ||+++++.|.+...
T Consensus 420 ~~~~i~a~s~v~~~--v~~~~~~~~~~~~~ 447 (459)
T PRK14355 420 RNSLIAAGTTVTKD--VPPDSLAIARSPQV 447 (459)
T ss_pred CCCEECCCCEEccc--CCCCcEEEecccee
Confidence 99999999999988 99999999865443
No 58
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.70 E-value=1.2e-16 Score=149.63 Aligned_cols=135 Identities=19% Similarity=0.300 Sum_probs=101.6
Q ss_pred CCceECCCCEECCCcEEec---------------CeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcC---
Q 024153 51 KAPVVNKDVFLAPSASIIG---------------DVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSN--- 112 (271)
Q Consensus 51 ~~~~i~~~~~I~~~~~i~~---------------~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~--- 112 (271)
..+.|++++.|++++.|.. ++.||++|.|++++.|.++ +.||++|.|++++.|......
T Consensus 279 ~~~~ig~~~~I~~~~~I~~~~I~~~~~I~~~~i~~~~ig~~~~I~~~~~I~~~---~~Ig~~~~Ig~~~~i~~~~i~~~~ 355 (450)
T PRK14360 279 GNTVIGSGCRIGPGSLIENSQIGENVTVLYSVVSDSQIGDGVKIGPYAHLRPE---AQIGSNCRIGNFVEIKKSQLGEGS 355 (450)
T ss_pred CCcEECCCCEECCCcEEEEEEEcCCCEEeeeEEeeccccCCcEECCCCEECCC---CEEeCceEECCCEEEeccccCCCc
Confidence 3455666666666655531 2445667777777777644 677888888877776432111
Q ss_pred ---CCCCccceEEcCCcEECcCcEEe--------ceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEE
Q 024153 113 ---LAGKVLPTIIGDNVTVGHSAVLH--------GCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVW 181 (271)
Q Consensus 113 ---~~~~~~~~~Ig~~~~i~~~~~i~--------~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv 181 (271)
+....+++.||++|.||+++.+. +++||++|+||.++.|.++++||++++|+++|+|.++ ||+++++
T Consensus 356 ~i~~~~~~~~~~i~~~~~iG~~~~~~~~~~~~~~~~~Ig~~~~iG~~~~i~~~~~ig~~~~v~~~~~v~~~--~~~~~~~ 433 (450)
T PRK14360 356 KVNHLSYIGDATLGEQVNIGAGTITANYDGVKKHRTVIGDRSKTGANSVLVAPITLGEDVTVAAGSTITKD--VPDNSLA 433 (450)
T ss_pred EeccceecCCceecCCcEECccceeccccccccCCcEeCCCeEeCCCCEEeCCcEECCCCEECCCCEECcc--CCCCCEE
Confidence 11123467899999999998874 5899999999999999999999999999999999998 9999999
Q ss_pred eccCceEcc
Q 024153 182 GGNPARFLR 190 (271)
Q Consensus 182 ~G~pa~~~~ 190 (271)
.|+|++.++
T Consensus 434 ~g~~~~~~~ 442 (450)
T PRK14360 434 IARSRQVIK 442 (450)
T ss_pred Eeccceeec
Confidence 998887663
No 59
>PLN02694 serine O-acetyltransferase
Probab=99.70 E-value=1.4e-16 Score=138.09 Aligned_cols=85 Identities=27% Similarity=0.414 Sum_probs=71.8
Q ss_pred eEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEeceeeCCCcEEccCcEEccCcEECCCcEEccCcEecC
Q 024153 92 ISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQ 171 (271)
Q Consensus 92 ~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~ 171 (271)
++||++|.|+++|+|.. ++++|.. +..+...+++||++|+||++++|.++++||++|+||++|+|.+
T Consensus 181 VVIGe~a~IGdnv~I~~----------~VtLGg~---g~~~~~r~piIGd~V~IGagA~Ilggi~IGd~a~IGAgSVV~k 247 (294)
T PLN02694 181 VVIGETAVIGNNVSILH----------HVTLGGT---GKACGDRHPKIGDGVLIGAGATILGNVKIGEGAKIGAGSVVLI 247 (294)
T ss_pred eEECCCcEECCCCEEee----------cceeCCc---ccccCCCccEECCCeEECCeeEECCCCEECCCCEECCCCEECC
Confidence 67777888888877763 4556543 3344456689999999999999999999999999999999999
Q ss_pred CceeCCCcEEeccCceEccC
Q 024153 172 NTKIPCGEVWGGNPARFLRK 191 (271)
Q Consensus 172 ~~~I~~~~vv~G~pa~~~~~ 191 (271)
+ ||++++++|+||++++.
T Consensus 248 d--VP~~~~v~G~PAkiv~~ 265 (294)
T PLN02694 248 D--VPPRTTAVGNPARLVGG 265 (294)
T ss_pred c--CCCCcEEEccCcEEEcc
Confidence 8 99999999999999875
No 60
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.69 E-value=4.4e-16 Score=145.60 Aligned_cols=38 Identities=26% Similarity=0.452 Sum_probs=29.5
Q ss_pred cceEEcCCcEECcCcEEe-ceeeCCCcEEccCcEEccCc
Q 024153 118 LPTIIGDNVTVGHSAVLH-GCTVEDEAFVGMGATLLDGV 155 (271)
Q Consensus 118 ~~~~Ig~~~~i~~~~~i~-~~~Ig~~~~Ig~~~~I~~~v 155 (271)
+++.||++|+|+.++.+. ++.||++++||++++|...+
T Consensus 379 ~~~~Ig~~~~ig~~~~i~~~~~Ig~~~~ig~~s~v~~~v 417 (446)
T PRK14353 379 HRTEIGAGAFIGSNSALVAPVTIGDGAYIASGSVITEDV 417 (446)
T ss_pred CCcEECCCcEECCCCEEeCCCEECCCCEECCCCEECccC
Confidence 367888888888888775 48888888888888887653
No 61
>PLN02739 serine acetyltransferase
Probab=99.68 E-value=6.3e-16 Score=136.56 Aligned_cols=57 Identities=33% Similarity=0.545 Sum_probs=53.5
Q ss_pred ceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCH
Q 024153 136 GCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTE 194 (271)
Q Consensus 136 ~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~ 194 (271)
.++||++|+||++++|.++++||++++||+||+|.++ ||+++++.|+||++++....
T Consensus 257 ~p~IGd~V~IGagA~IlG~V~IGd~aiIGAGSVV~kD--VP~~stvvG~PAriI~~~~~ 313 (355)
T PLN02739 257 HPKIGDGALLGACVTILGNISIGAGAMVAAGSLVLKD--VPSHSMVAGNPAKLIGFVDE 313 (355)
T ss_pred CcEECCCCEEcCCCEEeCCeEECCCCEECCCCEECCC--CCCCcEEEecCCEEeccCCc
Confidence 4789999999999999999999999999999999998 99999999999999987653
No 62
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.68 E-value=8.4e-16 Score=144.16 Aligned_cols=139 Identities=18% Similarity=0.306 Sum_probs=94.2
Q ss_pred hcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCC------------CceEECCCCEECCCCEEecCCc----
Q 024153 48 IFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDV------------NSISIGSGTNIQDNSLVHVAKS---- 111 (271)
Q Consensus 48 ~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~------------~~~~IG~~~~I~~~~~I~~~~~---- 111 (271)
++++.+.|++++.|++++.|.+++.||++|.|++++.|.+.. ..+.||++|.|++++.|.....
T Consensus 261 ~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~~~i~~~~ig~~~~Ig~~~~i~~~~~Ig~~ 340 (458)
T PRK14354 261 YIDADVEIGSDTVIEPGVVIKGNTVIGEDCVIGPGSRIVDSTIGDGVTITNSVIEESKVGDNVTVGPFAHLRPGSVIGEE 340 (458)
T ss_pred EECCCcEECCCCEEeCCeEEecceEECCCCEECCCcEEeccEECCCCEEEEEEEeCCEECCCcEECCceEecCCCEEeCC
Confidence 456667788888888888888889999999998888775320 0123444444444444432110
Q ss_pred --C------------------CCCCccceEEcCCcEECcCcEEe--------ceeeCCCcEEccCcEEccCcEECCCcEE
Q 024153 112 --N------------------LAGKVLPTIIGDNVTVGHSAVLH--------GCTVEDEAFVGMGATLLDGVYVEKHAMV 163 (271)
Q Consensus 112 --~------------------~~~~~~~~~Ig~~~~i~~~~~i~--------~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~I 163 (271)
- +....+++.||++|.|+.++.+. .++|||++++|.++.|.++++||++++|
T Consensus 341 ~~i~~~~~i~~~~i~~~~~i~~~~~~~~~~ig~~~~ig~~~~~~~~~~~~~~~~~igd~~~ig~~s~i~~~~~ig~~~~v 420 (458)
T PRK14354 341 VKIGNFVEIKKSTIGEGTKVSHLTYIGDAEVGENVNIGCGTITVNYDGKNKFKTIIGDNAFIGCNSNLVAPVTVGDNAYI 420 (458)
T ss_pred cEECCceEEeeeEECCCCEecceeeecCcccCCceEEcCceeecccccccccCCEECCCcEEccCCEEeCCcEECCCCEE
Confidence 0 00112345566666666666552 3788888888888888888888888888
Q ss_pred ccCcEecCCceeCCCcEEeccCceE
Q 024153 164 AAGALVRQNTKIPCGEVWGGNPARF 188 (271)
Q Consensus 164 g~~svV~~~~~I~~~~vv~G~pa~~ 188 (271)
|++|+|.++ ||+++++.|.|..+
T Consensus 421 ~~~~~v~~~--~~~~~~~~~~~~~~ 443 (458)
T PRK14354 421 AAGSTITKD--VPEDALAIARARQV 443 (458)
T ss_pred CCCCEECCC--CCCCCEEEecccee
Confidence 888888887 88888888887655
No 63
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.67 E-value=9e-16 Score=142.78 Aligned_cols=74 Identities=19% Similarity=0.413 Sum_probs=62.5
Q ss_pred ccceEEcCCcEECcCcEEe--------ceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEec-cCce
Q 024153 117 VLPTIIGDNVTVGHSAVLH--------GCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGG-NPAR 187 (271)
Q Consensus 117 ~~~~~Ig~~~~i~~~~~i~--------~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G-~pa~ 187 (271)
.++++||++|.||+++++. +++||++|+||.++.|.++++||++++||++++|.++ +++++++.| .|++
T Consensus 340 i~d~~Ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~~g~~v~~~--v~~~~~~~~~~~~~ 417 (430)
T PRK14359 340 LGDCEIDEGTNIGAGTITCNYDGKKKHKTIIGKNVFIGSDTQLVAPVNIEDNVLIAAGSTVTKD--VPKGSLAISRAPQK 417 (430)
T ss_pred ccCCEECCCCEECCCceEccccCccCcCCEECCCeEEcCCCEEeCCcEECCCCEECCCCEEccc--cCCCcEEEeccCce
Confidence 5678899999999988774 3799999999999999999999999999999999998 999998876 5555
Q ss_pred EccCC
Q 024153 188 FLRKL 192 (271)
Q Consensus 188 ~~~~~ 192 (271)
..+.+
T Consensus 418 ~~~~~ 422 (430)
T PRK14359 418 NIKNF 422 (430)
T ss_pred ehhhH
Confidence 54433
No 64
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.67 E-value=2.1e-15 Score=122.45 Aligned_cols=114 Identities=16% Similarity=0.282 Sum_probs=100.7
Q ss_pred hcCCCceECCCCEECCCcEEe---cCeEECCCCEEccCcEEecCC-------CceEECCCCEECCCCEEecCCcCCCCCc
Q 024153 48 IFDKAPVVNKDVFLAPSASII---GDVQVGRGSSIWYGCVLRGDV-------NSISIGSGTNIQDNSLVHVAKSNLAGKV 117 (271)
Q Consensus 48 ~~~~~~~i~~~~~I~~~~~i~---~~v~IG~~~~I~~~~~I~~~~-------~~~~IG~~~~I~~~~~I~~~~~~~~~~~ 117 (271)
.+...+.|++++.|+|++.|. +++.||++|.|+++++|..+. .++.||++|.|..++.+.
T Consensus 13 ~i~g~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i~---------- 82 (164)
T cd04646 13 EIRGDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKCE---------- 82 (164)
T ss_pred EEcCceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEEE----------
Confidence 345677899999999999996 569999999999999998652 357899999999999987
Q ss_pred cceEEcCCcEECcCcEE-eceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCC
Q 024153 118 LPTIIGDNVTVGHSAVL-HGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQN 172 (271)
Q Consensus 118 ~~~~Ig~~~~i~~~~~i-~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~ 172 (271)
.+.||++|+|+.++.| .+++||++|+||+++.|.+++.|+++++++++..+.+.
T Consensus 83 -~~~IGd~~~Ig~~a~I~~gv~Ig~~~~IgagsvV~~~~~i~~~~vi~g~~~~~~~ 137 (164)
T cd04646 83 -ALKIGNNNVFESKSFVGKNVIITDGCIIGAGCKLPSSEILPENTVIYGADCLRRT 137 (164)
T ss_pred -eeEECCCCEEeCCCEECCCCEECCCCEEeCCeEECCCcEECCCeEEeCCceEEEe
Confidence 4999999999999999 55999999999999999999999999999999888774
No 65
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.67 E-value=1.6e-15 Score=123.07 Aligned_cols=106 Identities=23% Similarity=0.394 Sum_probs=87.5
Q ss_pred cCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEE
Q 024153 49 FDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTV 128 (271)
Q Consensus 49 ~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i 128 (271)
+...+.|++++.|++++.|.+++.||++|.|++++.|.. ..||+++.|+.++.+. ++.|++++.|
T Consensus 32 i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~----siig~~~~I~~~~~i~-----------~siIg~~~~I 96 (163)
T cd05636 32 IEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKN----SIIMDGTKVPHLNYVG-----------DSVLGENVNL 96 (163)
T ss_pred EeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEee----eEecCCCEeccCCEEe-----------cCEECCCCEE
Confidence 344566777777777777777788888888888888763 5788888888888876 5789999999
Q ss_pred CcCcEEe-------------------------ceeeCCCcEEccCcEEccCcEECCCcEEccCcEe
Q 024153 129 GHSAVLH-------------------------GCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALV 169 (271)
Q Consensus 129 ~~~~~i~-------------------------~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV 169 (271)
++++.+. ++.||++|+||.++.|.++++||++++|+++++|
T Consensus 97 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIg~~~~ig~~~~i~~g~~ig~~~~i~agsvV 162 (163)
T cd05636 97 GAGTITANLRFDDKPVKVRLKGERVDTGRRKLGAIIGDGVKTGINVSLNPGVKIGPGSWVYPGCVV 162 (163)
T ss_pred CCCcEEcccCcCCcceEEEecCcceecCCcccCcEEcCCeEECCCcEECCCcEECCCCEECCCcEe
Confidence 9999873 4899999999999999999999999999999987
No 66
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.66 E-value=1.4e-15 Score=143.56 Aligned_cols=53 Identities=21% Similarity=0.350 Sum_probs=37.2
Q ss_pred cCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCE
Q 024153 49 FDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSL 105 (271)
Q Consensus 49 ~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~ 105 (271)
+.+.+.||+++.|++++.|.+++.||++|.|+++|.|.. ..||++|.|++++.
T Consensus 267 i~~~~~Ig~~~~I~~~~~I~~~v~Ig~~~~I~~~~~i~~----svI~~~~~I~~~~~ 319 (481)
T PRK14358 267 IEDTVTLGRDVTIEPGVLLRGQTRVADGVTIGAYSVVTD----SVLHEGAVIKPHSV 319 (481)
T ss_pred ccCCcEECCCCEEeCCcEEeCCcEECCCCEECCCCEEee----eEECCCCEEeecce
Confidence 356677888899999999888888888888888877742 24444444444333
No 67
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=99.66 E-value=6.4e-16 Score=125.39 Aligned_cols=53 Identities=26% Similarity=0.537 Sum_probs=50.9
Q ss_pred eeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccC
Q 024153 137 CTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRK 191 (271)
Q Consensus 137 ~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~ 191 (271)
-+||+++.||+++.|.++.+||+++.|||+|+|.++ ||+++++.|.||+++..
T Consensus 120 PtIg~~V~IGagAkILG~I~IGd~akIGA~sVVlkd--VP~~~tvvGvPArii~~ 172 (194)
T COG1045 120 PTIGNGVYIGAGAKILGNIEIGDNAKIGAGSVVLKD--VPPNATVVGVPARVIGR 172 (194)
T ss_pred CccCCCeEECCCCEEEcceEECCCCEECCCceEccC--CCCCceEecCcceEecc
Confidence 689999999999999999999999999999999999 99999999999999963
No 68
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.66 E-value=5.2e-16 Score=144.38 Aligned_cols=95 Identities=17% Similarity=0.328 Sum_probs=76.2
Q ss_pred eEECCCCEECCCCEEecCCcCCCCCccceEEcCCc----------EECcCcEEeceeeCCCcEEccCcEEcc-------C
Q 024153 92 ISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNV----------TVGHSAVLHGCTVEDEAFVGMGATLLD-------G 154 (271)
Q Consensus 92 ~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~----------~i~~~~~i~~~~Ig~~~~Ig~~~~I~~-------~ 154 (271)
+.||++|.|++++.|. ++.||++| .|++++.+++|+||++|.||+++++.. +
T Consensus 299 ~~ig~~~~i~~~~~i~-----------~~~ig~~~~i~~~~~~~~~i~~~~~i~d~~Ig~~~~ig~~~~~~~~~~~~~~~ 367 (430)
T PRK14359 299 SDVGPLAHIRPKSEIK-----------NTHIGNFVETKNAKLNGVKAGHLSYLGDCEIDEGTNIGAGTITCNYDGKKKHK 367 (430)
T ss_pred CEECCCCEECCCcEEe-----------ccEEcCcEEEcccEeccccccccccccCCEECCCCEECCCceEccccCccCcC
Confidence 4667777777666664 34555555 666777788899999999999998864 3
Q ss_pred cEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHHHH
Q 024153 155 VYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMA 198 (271)
Q Consensus 155 v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~~~ 198 (271)
++||++|+||+++.|.++++|++++++++. +.+.+++++....
T Consensus 368 ~~ig~~~~ig~~~~i~~~~~ig~~~~i~~g-~~v~~~v~~~~~~ 410 (430)
T PRK14359 368 TIIGKNVFIGSDTQLVAPVNIEDNVLIAAG-STVTKDVPKGSLA 410 (430)
T ss_pred CEECCCeEEcCCCEEeCCcEECCCCEECCC-CEEccccCCCcEE
Confidence 899999999999999999999999998654 8899999887653
No 69
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=99.66 E-value=1.4e-15 Score=123.29 Aligned_cols=51 Identities=31% Similarity=0.505 Sum_probs=48.5
Q ss_pred eceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCce
Q 024153 135 HGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPAR 187 (271)
Q Consensus 135 ~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~ 187 (271)
+.++||++|+|++++.|.++++||++++|+++|+|.++ ||+++++.|+||+
T Consensus 112 ~~~~Ig~~v~Ig~~a~I~~~v~IG~~~~Iga~s~V~~d--vp~~~~~~G~Par 162 (162)
T TIGR01172 112 RHPTVGEGVMIGAGAKVLGNIEVGENAKIGANSVVLKD--VPPGATVVGVPAR 162 (162)
T ss_pred cCCEECCCcEEcCCCEEECCcEECCCCEECCCCEECCC--CCCCCEEEeecCC
Confidence 45789999999999999999999999999999999998 9999999999986
No 70
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=99.66 E-value=1.8e-15 Score=114.11 Aligned_cols=108 Identities=24% Similarity=0.450 Sum_probs=85.9
Q ss_pred eEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEeceeeCCCcEEccCcE
Q 024153 71 VQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGAT 150 (271)
Q Consensus 71 v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~ 150 (271)
++||+++.|++++.|.+. ..+.||++|.|+++|.|....+ ..++....+.......++.||++|+|+.++.
T Consensus 2 v~Ig~~~~I~~~~~i~~~-~~v~IG~~~~Ig~~~~i~~~~~--------~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~ 72 (109)
T cd04647 2 ISIGDNVYIGPGCVISAG-GGITIGDNVLIGPNVTIYDHNH--------DIDDPERPIEQGVTSAPIVIGDDVWIGANVV 72 (109)
T ss_pred eEECCCcEECCCCEEecC-CceEECCCCEECCCCEEECCCC--------CCCccccccccccccCCeEECCCCEECCCCE
Confidence 567777888888877753 3488888888888888876422 2333333334455567799999999999999
Q ss_pred EccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEc
Q 024153 151 LLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFL 189 (271)
Q Consensus 151 I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~ 189 (271)
+.+++.|+++++|++++.|.++ +++++++.|.||+++
T Consensus 73 i~~~~~ig~~~~i~~~~~v~~~--i~~~~i~~g~pa~~~ 109 (109)
T cd04647 73 ILPGVTIGDGAVVGAGSVVTKD--VPPNSIVAGNPAKVI 109 (109)
T ss_pred EcCCCEECCCCEECCCCEEeeE--CCCCCEEEccccEeC
Confidence 9999999999999999999975 999999999999874
No 71
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=99.65 E-value=4e-15 Score=121.17 Aligned_cols=143 Identities=27% Similarity=0.402 Sum_probs=114.0
Q ss_pred cCCCceECCCCEECCCcEEec----CeEECCCCEEccCcEEecC-CCceEECCCCEECCCCEEecCCcCCCCCccceEEc
Q 024153 49 FDKAPVVNKDVFLAPSASIIG----DVQVGRGSSIWYGCVLRGD-VNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIG 123 (271)
Q Consensus 49 ~~~~~~i~~~~~I~~~~~i~~----~v~IG~~~~I~~~~~I~~~-~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig 123 (271)
+...+.++++++|++++.|.. .+.||++|.|++++.|.+. ...+.||++|.|++++.|.. ++.||
T Consensus 17 i~~~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g----------~~~Ig 86 (167)
T cd00710 17 VIGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHG----------PAYIG 86 (167)
T ss_pred EEeeEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCCceECCCCEEeC----------CEEEC
Confidence 445677889999999999876 4899999999999999643 23589999999999999984 79999
Q ss_pred CCcEECcCcEEeceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHHHHHHHHH
Q 024153 124 DNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQS 203 (271)
Q Consensus 124 ~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~~~~~~~~ 203 (271)
++|.|+.++.+.+++||++|+||+++.|. ++.|++++.+++++++.++ .+ .+.+.++.....+..+..
T Consensus 87 ~~~~Ig~~~~I~~~~Ig~~~~Ig~~s~i~-~~~i~~~~~v~~~~~v~~~--~~---------~~~~~~~~~~~~~~~~~i 154 (167)
T cd00710 87 DNCFIGFRSVVFNAKVGDNCVIGHNAVVD-GVEIPPGRYVPAGAVITSQ--TQ---------ADALPDVTDSAREFNEKV 154 (167)
T ss_pred CCCEECCCCEEECCEECCCCEEcCCCEEe-CCEeCCCCEECCCCEEcCC--Cc---------ccccccCChhHHHHHHHH
Confidence 99999999999999999999999999994 6899999999988888775 33 333344555554554555
Q ss_pred HHHHHHHHHH
Q 024153 204 AINYSNLARV 213 (271)
Q Consensus 204 ~~~~~~~~~~ 213 (271)
...|.++...
T Consensus 155 ~~~~~~~~~~ 164 (167)
T cd00710 155 ITVNNELAEG 164 (167)
T ss_pred hhhhhhhhhh
Confidence 5556666543
No 72
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=99.65 E-value=1.7e-15 Score=118.45 Aligned_cols=100 Identities=15% Similarity=0.272 Sum_probs=78.0
Q ss_pred CEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEEC----CCCEEecCCcCCCCCccceEEcCCcEECcCcEE
Q 024153 59 VFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQ----DNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVL 134 (271)
Q Consensus 59 ~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~----~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i 134 (271)
++|.|.+.+...+.||+++.|.+++++..+ +.||++|.|. .+++|. |++.||++|.|. +.+
T Consensus 2 ~~i~~~~~V~~~a~IG~GtvI~~gavV~~~---a~IG~~~iIn~~ig~~a~Ig----------hd~~IG~~~~I~--~~l 66 (147)
T cd04649 2 VRIADADRVRLGAYLAEGTTVMHEGFVNFN---AGTLGNCMVEGRISSGVIVG----------KGSDVGGGASIM--GTL 66 (147)
T ss_pred eEecCCCEECCCCEECCCcEECCCCEEccC---CEECCCeEECCcccCCEEEC----------CCCEECCCCEEE--EEC
Confidence 466677777777778888888888888765 7888888887 665554 466666666665 333
Q ss_pred e-c----eeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCcee
Q 024153 135 H-G----CTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKI 175 (271)
Q Consensus 135 ~-~----~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I 175 (271)
. + +.||++||||.++.| ++.||++++||++++|.+++.|
T Consensus 67 ~G~~~~pV~IG~~~~IG~ga~I--gv~IG~~~vIGaGsvV~k~t~i 110 (147)
T cd04649 67 SGGGNNVISIGKRCLLGANSGI--GISLGDNCIVEAGLYVTAGTKV 110 (147)
T ss_pred CCCcccCEEECCCCEECCCCEE--eEEECCCCEECCCCEEeCCeEE
Confidence 2 2 899999999999999 6999999999999999998765
No 73
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.63 E-value=2.6e-15 Score=140.57 Aligned_cols=139 Identities=15% Similarity=0.302 Sum_probs=103.4
Q ss_pred cCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecC----C--------CceEECCCCEECCCCEEecCCcCCCCC
Q 024153 49 FDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGD----V--------NSISIGSGTNIQDNSLVHVAKSNLAGK 116 (271)
Q Consensus 49 ~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~----~--------~~~~IG~~~~I~~~~~I~~~~~~~~~~ 116 (271)
++..+.|++++.|++++.|.+++.||++|.|++++.|.+. . ..+.||++|.|+++|.|..
T Consensus 259 i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~I~~~~~I~~~~i~~~~ig~~~~I~~~~~I~~-------- 330 (450)
T PRK14360 259 ISETVELGPDVIIEPQTHLRGNTVIGSGCRIGPGSLIENSQIGENVTVLYSVVSDSQIGDGVKIGPYAHLRP-------- 330 (450)
T ss_pred EeCCEEECCCCEECCCCEEeCCcEECCCCEECCCcEEEEEEEcCCCEEeeeEEeeccccCCcEECCCCEECC--------
Confidence 4456678888888888899888999999999888887521 0 1234566666666666643
Q ss_pred ccceEEcCCcEECcCcEE-----------------eceeeCCCcEEccCcEEcc-------CcEECCCcEEccCcEecCC
Q 024153 117 VLPTIIGDNVTVGHSAVL-----------------HGCTVEDEAFVGMGATLLD-------GVYVEKHAMVAAGALVRQN 172 (271)
Q Consensus 117 ~~~~~Ig~~~~i~~~~~i-----------------~~~~Ig~~~~Ig~~~~I~~-------~v~Ig~~~~Ig~~svV~~~ 172 (271)
++.||++|.|+.++.+ .++.||++|.||+++.+.. +++||++|+||++++|.++
T Consensus 331 --~~~Ig~~~~Ig~~~~i~~~~i~~~~~i~~~~~~~~~~i~~~~~iG~~~~~~~~~~~~~~~~~Ig~~~~iG~~~~i~~~ 408 (450)
T PRK14360 331 --EAQIGSNCRIGNFVEIKKSQLGEGSKVNHLSYIGDATLGEQVNIGAGTITANYDGVKKHRTVIGDRSKTGANSVLVAP 408 (450)
T ss_pred --CCEEeCceEECCCEEEeccccCCCcEeccceecCCceecCCcEECccceeccccccccCCcEeCCCeEeCCCCEEeCC
Confidence 3455555555544443 3467888899999988753 7999999999999999999
Q ss_pred ceeCCCcEEeccCceEccCCCHHHHH
Q 024153 173 TKIPCGEVWGGNPARFLRKLTEEEMA 198 (271)
Q Consensus 173 ~~I~~~~vv~G~pa~~~~~~~~~~~~ 198 (271)
++|+++++++ ..+.+.+++++..+.
T Consensus 409 ~~ig~~~~v~-~~~~v~~~~~~~~~~ 433 (450)
T PRK14360 409 ITLGEDVTVA-AGSTITKDVPDNSLA 433 (450)
T ss_pred cEECCCCEEC-CCCEECccCCCCCEE
Confidence 9999999985 459999999887653
No 74
>PLN02357 serine acetyltransferase
Probab=99.63 E-value=2.7e-15 Score=133.57 Aligned_cols=56 Identities=25% Similarity=0.462 Sum_probs=52.6
Q ss_pred eceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCC
Q 024153 135 HGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKL 192 (271)
Q Consensus 135 ~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~ 192 (271)
..++||++|+||+++.|.++++||++++||++|+|.++ ||++++++|+||++++..
T Consensus 277 ~~piIGd~V~IGagA~IlggV~IGdga~IGAgSVV~~d--VP~~~~v~G~PArvv~~~ 332 (360)
T PLN02357 277 RHPKIGDGVLIGAGTCILGNITIGEGAKIGAGSVVLKD--VPPRTTAVGNPARLIGGK 332 (360)
T ss_pred cCceeCCCeEECCceEEECCeEECCCCEECCCCEECcc--cCCCcEEECCCeEEEccC
Confidence 35899999999999999999999999999999999998 999999999999999754
No 75
>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]
Probab=99.63 E-value=7.1e-16 Score=126.67 Aligned_cols=120 Identities=24% Similarity=0.403 Sum_probs=80.4
Q ss_pred ceECCCCEECCCc--EEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECc
Q 024153 53 PVVNKDVFLAPSA--SIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGH 130 (271)
Q Consensus 53 ~~i~~~~~I~~~~--~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~ 130 (271)
..++-+++|.|.. .|.+.++||++-.+...+- ++||+-..|+++|+|. |++++|..- .
T Consensus 135 lal~~q~ris~~~gvdihpaa~ig~gilldhatg-------vvigeTAvvg~~vSil----------H~Vtlggtg---k 194 (269)
T KOG4750|consen 135 LALGLQVRISPNFGVDIHPAAKIGKGILLDHATG-------VVIGETAVVGDNVSIL----------HPVTLGGTG---K 194 (269)
T ss_pred EEEeecceecccccccccchhhcccceeeccccc-------eeecceeEeccceeee----------cceeecccc---c
Confidence 3445555555553 3455566666655543322 4455555555554443 233333211 0
Q ss_pred CcEEeceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCH
Q 024153 131 SAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTE 194 (271)
Q Consensus 131 ~~~i~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~ 194 (271)
++--..-.|||+||||++++|.++++||+|++||+||+|.+| ||++++..|+|||.++..++
T Consensus 195 ~~gdrhP~Igd~vliGaGvtILgnV~IGegavIaAGsvV~kD--VP~~~~AvGnPAklIg~~~e 256 (269)
T KOG4750|consen 195 GSGDRHPKIGDNVLIGAGVTILGNVTIGEGAVIAAGSVVLKD--VPPNTLAVGNPAKLIGKIDE 256 (269)
T ss_pred cccccCCcccCCeEEccccEEeCCeeECCCcEEeccceEEec--cCCCceecCCchhhcccccc
Confidence 110011489999999999999999999999999999999999 99999999999999986654
No 76
>PRK10191 putative acyl transferase; Provisional
Probab=99.63 E-value=4.2e-15 Score=117.82 Aligned_cols=52 Identities=19% Similarity=0.314 Sum_probs=49.1
Q ss_pred ceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEc
Q 024153 136 GCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFL 189 (271)
Q Consensus 136 ~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~ 189 (271)
.+.|||+|+||+++.+.++++||++++|+++++|.++ +++++++.|.||++.
T Consensus 92 ~~~IGd~~~Ig~~~~I~~~v~IG~~~~Igags~V~~d--v~~~~~v~G~pA~~~ 143 (146)
T PRK10191 92 CPHIGNGVELGANVIILGDITIGNNVTVGAGSVVLDS--VPDNALVVGEKARVK 143 (146)
T ss_pred CCEECCCcEEcCCCEEeCCCEECCCCEECCCCEECCc--cCCCcEEEccCcEEE
Confidence 3689999999999999999999999999999999998 999999999999864
No 77
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=99.63 E-value=4.2e-15 Score=119.36 Aligned_cols=107 Identities=21% Similarity=0.365 Sum_probs=97.6
Q ss_pred eEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEec-----eeeCCCcEE
Q 024153 71 VQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHG-----CTVEDEAFV 145 (271)
Q Consensus 71 v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~-----~~Ig~~~~I 145 (271)
-.|.+.++|.+.++|.|+ +.||+++.|..+++|.+... +..||+++.|.+|++||. ++||++|.|
T Consensus 12 P~i~~~a~Va~~A~viGd---V~Ig~~vsIw~~aVlRgD~~-------~I~IG~~tNIQDg~ViH~~~~~p~~IG~~vtI 81 (176)
T COG0663 12 PKIDPTAFVAPSATVIGD---VRIGAGVSIWPGAVLRGDVE-------PIRIGARTNIQDGVVIHADPGYPVTIGDDVTI 81 (176)
T ss_pred CCCCCceEECCCCEEEEe---EEECCCCEECCceEEEccCC-------ceEECCCceecCCeEEecCCCCCeEECCCcEE
Confidence 347788999999999988 99999999999999998654 899999999999999976 999999999
Q ss_pred ccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEc
Q 024153 146 GMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFL 189 (271)
Q Consensus 146 g~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~ 189 (271)
|.++.|.+ |+||++|.||.+|+|..++.|+++++++ ..|.+.
T Consensus 82 GH~aivHG-c~Ig~~~lIGmgA~vldga~IG~~~iVg-AgalV~ 123 (176)
T COG0663 82 GHGAVVHG-CTIGDNVLIGMGATVLDGAVIGDGSIVG-AGALVT 123 (176)
T ss_pred cCccEEEE-eEECCCcEEecCceEeCCcEECCCcEEc-cCCccc
Confidence 99999988 9999999999999999999999999984 446655
No 78
>PLN02296 carbonate dehydratase
Probab=99.62 E-value=2.1e-14 Score=124.82 Aligned_cols=116 Identities=18% Similarity=0.283 Sum_probs=96.0
Q ss_pred CeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEe-----------cee
Q 024153 70 DVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLH-----------GCT 138 (271)
Q Consensus 70 ~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~-----------~~~ 138 (271)
.-.|++++.|.+++++.++ +.||++|.|+++|+|.+.. .++.||++|.|+++++|+ +++
T Consensus 52 ~p~I~~~~~I~p~A~V~G~---V~IG~~~~I~~gavI~g~~-------~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~si 121 (269)
T PLN02296 52 APVVDKDAFVAPSASVIGD---VQVGRGSSIWYGCVLRGDV-------NSISVGSGTNIQDNSLVHVAKTNLSGKVLPTI 121 (269)
T ss_pred CCccCCCCEECCCcEEEcc---eEECCCCEECCCCEEEcCC-------CceEECCCCEECCCCEEEeCCCcccCCCCCcE
Confidence 3458888899999998876 8999999999999998643 268999999999999995 589
Q ss_pred eCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccC--CCHHHH
Q 024153 139 VEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRK--LTEEEM 197 (271)
Q Consensus 139 Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~--~~~~~~ 197 (271)
||++|+|+.+|+| .+++||++|+||.+++|.+++.|+++++++. .+.+.++ +++..+
T Consensus 122 IG~~v~IG~~avI-~g~~Igd~v~IG~ga~I~~gv~Ig~~a~Iga-gSvV~~~~~I~~~~~ 180 (269)
T PLN02296 122 IGDNVTIGHSAVL-HGCTVEDEAFVGMGATLLDGVVVEKHAMVAA-GALVRQNTRIPSGEV 180 (269)
T ss_pred eCCCCEECCCcee-cCCEECCCcEECCCcEECCCeEECCCCEECC-CCEEecCCEeCCCeE
Confidence 9999999999987 4589999999999999999989999988853 3666554 444443
No 79
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=99.61 E-value=5e-15 Score=123.30 Aligned_cols=115 Identities=17% Similarity=0.276 Sum_probs=95.9
Q ss_pred eEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEec-----eeeCCCcEE
Q 024153 71 VQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHG-----CTVEDEAFV 145 (271)
Q Consensus 71 v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~-----~~Ig~~~~I 145 (271)
-.|++++.|++++.|.++ +.||++|.|+++|+|.+.. +.+.|++++.|+++|.|+. ++|+++++|
T Consensus 11 p~i~~~a~I~~~a~I~g~---V~IG~~~~I~~~avIrgd~-------~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~~~I 80 (196)
T PRK13627 11 PVVHPTAFVHPSAVLIGD---VIVGAGVYIGPLASLRGDY-------GRLIVQAGANLQDGCIMHGYCDTDTIVGENGHI 80 (196)
T ss_pred CccCCCeEECCCCEEECc---eEECCCCEECCCCEEecCC-------ccEEECCCCEECCCCEEeCCCCCCCEECCCCEE
Confidence 346788888999998877 8999999999999998643 2588999999999999965 789999999
Q ss_pred ccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCC--CHHHH
Q 024153 146 GMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKL--TEEEM 197 (271)
Q Consensus 146 g~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~--~~~~~ 197 (271)
|.++.+ .+++||++|+||++++|.+++.|++++++. ..+.+.++. ++..+
T Consensus 81 g~~a~i-~g~vIG~~v~IG~ga~V~~g~~IG~~s~Vg-ags~V~~~~~ip~~~~ 132 (196)
T PRK13627 81 GHGAIL-HGCVIGRDALVGMNSVIMDGAVIGEESIVA-AMSFVKAGFQGEKRQL 132 (196)
T ss_pred CCCcEE-eeEEECCCCEECcCCccCCCcEECCCCEEc-CCCEEeCCcCcCCCcE
Confidence 999977 458899999999999999999999999885 447777765 44443
No 80
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=99.61 E-value=1.4e-14 Score=120.63 Aligned_cols=146 Identities=14% Similarity=0.235 Sum_probs=97.3
Q ss_pred CCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCC--CceEECCCCEECCCCEEecCCcCCC-------CCccceE
Q 024153 51 KAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDV--NSISIGSGTNIQDNSLVHVAKSNLA-------GKVLPTI 121 (271)
Q Consensus 51 ~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~--~~~~IG~~~~I~~~~~I~~~~~~~~-------~~~~~~~ 121 (271)
....+++.++|++++.|.+.+.|+.++.|+++|.|.... ....||++|.|++++.|....-... -...++.
T Consensus 8 ~~~~~~~~v~ig~~~~I~~~a~i~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~ 87 (193)
T cd03353 8 ETTYIDGDVEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTV 87 (193)
T ss_pred CeEEEcCCeEECCCcEECCCCEEeCcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCccE
Confidence 456788888899999998888898889999999987542 2346777777777666642110000 0011233
Q ss_pred EcCCcEECcCcEE-----------------eceeeCCCcEEccCcEEc-------cCcEECCCcEEccCcEecCCceeCC
Q 024153 122 IGDNVTVGHSAVL-----------------HGCTVEDEAFVGMGATLL-------DGVYVEKHAMVAAGALVRQNTKIPC 177 (271)
Q Consensus 122 Ig~~~~i~~~~~i-----------------~~~~Ig~~~~Ig~~~~I~-------~~v~Ig~~~~Ig~~svV~~~~~I~~ 177 (271)
|++++.|++++.+ .++.||++|.||+++.+. .+++||++++|++++.+.++++|++
T Consensus 88 Ig~~~~Ig~~~~i~~s~ig~~~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~vigd~~~ig~~~~i~~~~~Ig~ 167 (193)
T cd03353 88 LGEGVHIGNFVEIKKSTIGEGSKANHLSYLGDAEIGEGVNIGAGTITCNYDGVNKHRTVIGDNVFIGSNSQLVAPVTIGD 167 (193)
T ss_pred ECCCCEECCcEEEecceEcCCCEecccceecccEECCCCEEcCceEEeccCCccccCCEECCCeEEccCCEEeCCcEECC
Confidence 3333333333222 224555666666665553 2578999999999999999999999
Q ss_pred CcEEeccCceEccCCCHHHH
Q 024153 178 GEVWGGNPARFLRKLTEEEM 197 (271)
Q Consensus 178 ~~vv~G~pa~~~~~~~~~~~ 197 (271)
++++... +.+.++++++.+
T Consensus 168 ~~~i~~g-s~V~~~v~~~~~ 186 (193)
T cd03353 168 GATIAAG-STITKDVPPGAL 186 (193)
T ss_pred CcEECCC-CEEccccCCCCE
Confidence 9998654 888899887654
No 81
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.61 E-value=1.3e-14 Score=136.10 Aligned_cols=133 Identities=19% Similarity=0.346 Sum_probs=82.7
Q ss_pred CCceECCCCEECCCcEEecCeEECCCCEEccCcEEecC-------------CCceEECCCCEECCCCEEecCCcC-----
Q 024153 51 KAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGD-------------VNSISIGSGTNIQDNSLVHVAKSN----- 112 (271)
Q Consensus 51 ~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~-------------~~~~~IG~~~~I~~~~~I~~~~~~----- 112 (271)
+.+.|++++.|.+++.|.+++.||++|.|++++.|.+. ..++.||++|.|++++.|..+...
T Consensus 268 ~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~ig~~~~ 347 (456)
T PRK14356 268 PRATIEPGAEIYGPCEIYGASRIARGAVIHSHCWLRDAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAVLEEGAR 347 (456)
T ss_pred CCcEECCCCEEeCCcEEeCceEECCCCEECCCeEEEeeEECCCCEEeeeEEEcccceecccEECCceEECCCCEECCCCE
Confidence 33444445555544555556667777777666665431 012344555555554444321110
Q ss_pred -------------------CCCCccceEEcCCcEECcCcEE--------eceeeCCCcEEccCcEEccCcEECCCcEEcc
Q 024153 113 -------------------LAGKVLPTIIGDNVTVGHSAVL--------HGCTVEDEAFVGMGATLLDGVYVEKHAMVAA 165 (271)
Q Consensus 113 -------------------~~~~~~~~~Ig~~~~i~~~~~i--------~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~ 165 (271)
+.....++.||+++.|++++.+ +++.|||++++|.++.|.++++||++++|++
T Consensus 348 ig~~~~i~~~~i~~~~~i~~~~~ig~~~ig~~~~Ig~~~~~~~~~~~~~~~~~igd~~~ig~~~~i~~~~~ig~~~~i~~ 427 (456)
T PRK14356 348 VGNFVEMKKAVLGKGAKANHLTYLGDAEIGAGANIGAGTITCNYDGVNKHRTVIGEGAFIGSNTALVAPVTIGDGALVGA 427 (456)
T ss_pred ecCCceeeeeEecCCcEecccccccCeEECCCCEECCCceeeccccccCCCCEECCCcEEcCCCEEeCCcEECCCCEEcC
Confidence 0011234566777777777654 2478888888888888888888888888888
Q ss_pred CcEecCCceeCCCcEEeccC
Q 024153 166 GALVRQNTKIPCGEVWGGNP 185 (271)
Q Consensus 166 ~svV~~~~~I~~~~vv~G~p 185 (271)
+|+|.++ |++++++.|..
T Consensus 428 ~~~v~~~--~~~~~~~~~~~ 445 (456)
T PRK14356 428 GSVITKD--VPDGSLAIARG 445 (456)
T ss_pred CCEEecc--CCCCcEEEEec
Confidence 8888887 88888888763
No 82
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.60 E-value=3.1e-15 Score=115.39 Aligned_cols=161 Identities=19% Similarity=0.217 Sum_probs=132.9
Q ss_pred CCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcC---CCCCccceEEcCCcE
Q 024153 51 KAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSN---LAGKVLPTIIGDNVT 127 (271)
Q Consensus 51 ~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~---~~~~~~~~~Ig~~~~ 127 (271)
..+.|.+++.+...+.|.|++.|+++|.++|.+++.++.+.++||++|.|.+.++|...-.+ .+.......||.+..
T Consensus 7 ~svkIap~AvVCvEs~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~Nv 86 (190)
T KOG4042|consen 7 TSVKIAPSAVVCVESDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNV 86 (190)
T ss_pred ceeeecCceEEEEecccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEeccce
Confidence 45678888888888899999999999999999999999999999999999999998653222 122345899999999
Q ss_pred ECcCcEEeceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCc--eEccC---CCHHHHHHHHH
Q 024153 128 VGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPA--RFLRK---LTEEEMAFISQ 202 (271)
Q Consensus 128 i~~~~~i~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa--~~~~~---~~~~~~~~~~~ 202 (271)
+.-+|....-.+||+..|+..+.+.+||.+-++|+||++..|..+-.+|+++++.|... |..++ -.+.++..+++
T Consensus 87 FeVgc~s~A~kvGd~NVieskayvg~gv~vssgC~vGA~c~v~~~q~lpent~vYga~~L~R~~~~~~~~qtlQidFLrK 166 (190)
T KOG4042|consen 87 FEVGCKSSAKKVGDRNVIESKAYVGDGVSVSSGCSVGAKCTVFSHQNLPENTSVYGATNLSRTTKTPNMTQTLQIDFLRK 166 (190)
T ss_pred EEeechhhhhhhcCcceEeeeeEecCCcEEcCCceeccceEEecccccCCcceEEccccccceecCCCCCccchHHHHHH
Confidence 99999988999999999999999999999999999999999998888999999998633 22222 23455667777
Q ss_pred HHHHHHHHH
Q 024153 203 SAINYSNLA 211 (271)
Q Consensus 203 ~~~~~~~~~ 211 (271)
....|.-|.
T Consensus 167 iLPnYHHL~ 175 (190)
T KOG4042|consen 167 ILPNYHHLY 175 (190)
T ss_pred Hccchhhhh
Confidence 666666554
No 83
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.59 E-value=1.6e-14 Score=135.38 Aligned_cols=146 Identities=15% Similarity=0.238 Sum_probs=97.2
Q ss_pred CCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCC--CceEECCCCEECCCCEEecCCcCCC-------CCccceE
Q 024153 51 KAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDV--NSISIGSGTNIQDNSLVHVAKSNLA-------GKVLPTI 121 (271)
Q Consensus 51 ~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~--~~~~IG~~~~I~~~~~I~~~~~~~~-------~~~~~~~ 121 (271)
..+.+++++.|++++.|.+++.|+.++.|+++|.|.... .+++||++|.|++++.|....-... -...++.
T Consensus 262 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~ 341 (456)
T PRK14356 262 ESVRIGPRATIEPGAEIYGPCEIYGASRIARGAVIHSHCWLRDAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAV 341 (456)
T ss_pred CcEEECCCcEECCCCEEeCCcEEeCceEECCCCEECCCeEEEeeEECCCCEEeeeEEEcccceecccEECCceEECCCCE
Confidence 346678888888888888888888889999999998552 3566777777777666653211100 0011223
Q ss_pred EcCCcEECcCcEEe-----------------ceeeCCCcEEccCcEEc-------cCcEECCCcEEccCcEecCCceeCC
Q 024153 122 IGDNVTVGHSAVLH-----------------GCTVEDEAFVGMGATLL-------DGVYVEKHAMVAAGALVRQNTKIPC 177 (271)
Q Consensus 122 Ig~~~~i~~~~~i~-----------------~~~Ig~~~~Ig~~~~I~-------~~v~Ig~~~~Ig~~svV~~~~~I~~ 177 (271)
||+++.|++++.+. +++||+++.|++++.+. .++.||+++++|+++.|.++++|++
T Consensus 342 ig~~~~ig~~~~i~~~~i~~~~~i~~~~~ig~~~ig~~~~Ig~~~~~~~~~~~~~~~~~igd~~~ig~~~~i~~~~~ig~ 421 (456)
T PRK14356 342 LEEGARVGNFVEMKKAVLGKGAKANHLTYLGDAEIGAGANIGAGTITCNYDGVNKHRTVIGEGAFIGSNTALVAPVTIGD 421 (456)
T ss_pred ECCCCEecCCceeeeeEecCCcEecccccccCeEECCCCEECCCceeeccccccCCCCEECCCcEEcCCCEEeCCcEECC
Confidence 33333333332221 24555555555555431 2489999999999999999999999
Q ss_pred CcEEeccCceEccCCCHHHH
Q 024153 178 GEVWGGNPARFLRKLTEEEM 197 (271)
Q Consensus 178 ~~vv~G~pa~~~~~~~~~~~ 197 (271)
++++++. +.+.+++++..+
T Consensus 422 ~~~i~~~-~~v~~~~~~~~~ 440 (456)
T PRK14356 422 GALVGAG-SVITKDVPDGSL 440 (456)
T ss_pred CCEEcCC-CEEeccCCCCcE
Confidence 9998654 888899987765
No 84
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=99.58 E-value=1.5e-14 Score=122.64 Aligned_cols=107 Identities=24% Similarity=0.418 Sum_probs=92.1
Q ss_pred CCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEe
Q 024153 56 NKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLH 135 (271)
Q Consensus 56 ~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~ 135 (271)
-++++|.|++.+..++.||+|++|++.+.|.-. ..+++.|-|.-++++.+ ..+||++|+|+.++.|.
T Consensus 106 ~~g~RI~p~a~VR~ga~i~~gtvvM~~sfVNig---A~~~~gtMVd~~as~G~----------~a~VGkn~higgGa~I~ 172 (271)
T COG2171 106 PEGVRIVPGAIVRLGAYIAKGTVVMPESFVNIG---AGTGEGTMVDGRASVGS----------CAQVGKNSHIGGGASIG 172 (271)
T ss_pred cCceeecCccEEeeccEECCCcEEcccceEEEC---cccCcceEEeeeeeeec----------cEEECCCcccCCcceEe
Confidence 345899999999999999999999998887633 56777777777777763 68899999999999985
Q ss_pred c---------eeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCcee
Q 024153 136 G---------CTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKI 175 (271)
Q Consensus 136 ~---------~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I 175 (271)
| ++|||+|+||+|+.+..|+.+|++|+|++|..|++++.+
T Consensus 173 GVLep~~a~Pv~IgdncliGAns~~veGV~vGdg~VV~aGv~I~~~tki 221 (271)
T COG2171 173 GVLEPLQANPVIIGDNCLIGANSEVVEGVIVGDGCVVAAGVFITQDTKI 221 (271)
T ss_pred EEecCCCCCCeEECCccEeccccceEeeeEeCCCcEEecceEEeCCcce
Confidence 4 899999999999999999999999999999999999443
No 85
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=99.58 E-value=4.7e-15 Score=126.61 Aligned_cols=113 Identities=21% Similarity=0.345 Sum_probs=100.2
Q ss_pred ECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEe-ceeeCCCcEEccCcEE
Q 024153 73 VGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLH-GCTVEDEAFVGMGATL 151 (271)
Q Consensus 73 IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~-~~~Ig~~~~Ig~~~~I 151 (271)
++.++.|++++.|.+. +.||++|.|++++.|.. ++.||++|.|++++.+. +++||++|+|+.++.|
T Consensus 83 vg~~~~I~~~a~I~g~---v~IG~~~~I~~~~~I~~----------~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I 149 (231)
T TIGR03532 83 KNINARIEPGAIIRDQ---VIIGDNAVIMMGAVINI----------GAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVL 149 (231)
T ss_pred cccccEECCCCEEeCC---eEECCCCEEecCcccCC----------CeEECCCCEEccccccCCCcEECCCcEEcCCcEE
Confidence 6788888888888865 89999999999999974 78999999999999995 6999999999999999
Q ss_pred cc--------CcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHHHHH
Q 024153 152 LD--------GVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAF 199 (271)
Q Consensus 152 ~~--------~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~~~~ 199 (271)
.+ ++.||++|+||++++|.+++.|++++++. ..+.+.+++++..+..
T Consensus 150 ~~~~~~~~~~~v~IGd~v~IG~gsvI~~g~~Ig~~~~Ig-agsvV~~di~~~~vv~ 204 (231)
T TIGR03532 150 AGVIEPPSAKPVVIEDNVLIGANAVILEGVRVGKGAVVA-AGAIVTEDVPPNTVVA 204 (231)
T ss_pred ccccccccCCCeEECCCcEECCCCEEcCCCEECCCCEEC-CCCEEccccCCCcEEE
Confidence 85 69999999999999999999999999985 5588888888777643
No 86
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.57 E-value=3.7e-14 Score=133.85 Aligned_cols=64 Identities=27% Similarity=0.413 Sum_probs=48.6
Q ss_pred cceEEcCCcEECcCcEEe--------ceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEec
Q 024153 118 LPTIIGDNVTVGHSAVLH--------GCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGG 183 (271)
Q Consensus 118 ~~~~Ig~~~~i~~~~~i~--------~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G 183 (271)
++++||++|.|++++++. ++.||++|+||++++|.++++||++++|+++|+|.++ +++++++.+
T Consensus 373 ~~~~ig~~~~ig~~~~i~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~Ig~~~~i~~gs~v~~~--v~~~~~~~~ 444 (481)
T PRK14358 373 GDVTIGAETNVGAGTIVANFDGVNKHQSKVGAGVFIGSNTTLIAPRVVGDAAFIAAGSAVHDD--VPEGAMAVA 444 (481)
T ss_pred CCeEEcCCceEcCCEEEeCCCCccCCCCEECCCeEEcCCCEEcCCcEECCCCEECCCCEEecc--cCCCCEEEe
Confidence 457777777777777663 3678888888888888888888888888888888877 777777763
No 87
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=1.1e-14 Score=135.37 Aligned_cols=133 Identities=22% Similarity=0.315 Sum_probs=104.8
Q ss_pred HHHHhhcccccCchhhhhhhhhhhhhhhhcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCE
Q 024153 20 QALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTN 99 (271)
Q Consensus 20 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~ 99 (271)
+.+.+|.+.+..+..+... +.+.+...+.+-++.+.+.+.+.++.++.||.++.|+.++.|.. .+||.+|.
T Consensus 288 DiI~RW~YP~Vpd~~~~~~-----q~~~~~r~~IYk~~dv~~~~~~~v~~~~~ig~gT~Ig~g~~I~N----SVIG~~c~ 358 (673)
T KOG1461|consen 288 DIIQRWTYPLVPDINFSGN-----QTFSLERRNIYKSPDVVLSHSVIVGANVVIGAGTKIGSGSKISN----SVIGANCR 358 (673)
T ss_pred HHHHhhcccccccccCCCC-----ceeeecccccccCccceehhhccccceEEecccccccCCCeeec----ceecCCCE
Confidence 4566666666555443321 12223333444567788888889999999999999999999984 59999999
Q ss_pred ECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEeceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCC
Q 024153 100 IQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQN 172 (271)
Q Consensus 100 I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~ 172 (271)
||.||.|. ++.|+++|+||.||.|+.+.|+|++.|++++.+.+||+||.+++++.+-++.++
T Consensus 359 IgsN~~I~-----------~S~iw~~v~Igdnc~I~~aii~d~v~i~~~~~l~~g~vl~~~VVv~~~~~l~~n 420 (673)
T KOG1461|consen 359 IGSNVRIK-----------NSFIWNNVTIGDNCRIDHAIICDDVKIGEGAILKPGSVLGFGVVVGRNFVLPKN 420 (673)
T ss_pred ecCceEEe-----------eeeeecCcEECCCceEeeeEeecCcEeCCCcccCCCcEEeeeeEeCCCcccccc
Confidence 99999998 699999999999999999999999999999988888887777777766666555
No 88
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.57 E-value=3.2e-14 Score=133.63 Aligned_cols=61 Identities=10% Similarity=0.204 Sum_probs=47.1
Q ss_pred eeeCCCcEEccCcEEc-------cCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHHHH
Q 024153 137 CTVEDEAFVGMGATLL-------DGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMA 198 (271)
Q Consensus 137 ~~Ig~~~~Ig~~~~I~-------~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~~~ 198 (271)
+.||++|.||+++++. .++.||++|+||+++.|.++++|++++++++. +.+.+++++..+.
T Consensus 373 ~~ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~a~-s~v~~~v~~~~~~ 440 (459)
T PRK14355 373 ATIGRNVNIGCGTITCNYDGVKKHRTVIEDDVFVGSDVQFVAPVTVGRNSLIAAG-TTVTKDVPPDSLA 440 (459)
T ss_pred CEECCCCEEccceeecCcCCccccCcEecCCeEEcCCCEEeCCcEECCCCEECCC-CEEcccCCCCcEE
Confidence 3556666666666542 34789999999999999999999999998654 8888888877653
No 89
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=99.56 E-value=3.4e-14 Score=123.43 Aligned_cols=105 Identities=23% Similarity=0.336 Sum_probs=87.2
Q ss_pred eECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceE-ECCCCE---ECCCCEEecCCcCCCCCccceEEcCCcEEC
Q 024153 54 VVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSIS-IGSGTN---IQDNSLVHVAKSNLAGKVLPTIIGDNVTVG 129 (271)
Q Consensus 54 ~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~-IG~~~~---I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~ 129 (271)
.+..+++|++.+.|..++.||++|.|+++++|..+ .. +|+++. |..+++|. |++.||+++.|
T Consensus 174 Vvp~gVrI~~sa~Vr~gA~LGeGT~IM~~a~Vn~n---AgtiG~~~IEgrInsGavIG----------hds~IG~gasI- 239 (341)
T TIGR03536 174 VVPKGVRIADTARVRLGAYVGEGTTVMHEGFINFN---AGTEGPSMVEGRISAGVMVG----------KGSDLGGGCST- 239 (341)
T ss_pred EccCCcEEcCCCeEcCCcEECCCCEEecCCEECcC---cEecCCceEecccccCCEEC----------CCCEECCCCEE-
Confidence 36678888888888888889999999998888744 44 788888 77888776 47888888888
Q ss_pred cCcEEe-c----eeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCcee
Q 024153 130 HSAVLH-G----CTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKI 175 (271)
Q Consensus 130 ~~~~i~-~----~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I 175 (271)
++++. + +.||++|+||+++.| ++.||++|+|++|++|..++.|
T Consensus 240 -g~tLsGg~~~~V~IGe~~lIGagA~I--GI~IGd~~iIGAGavVtagTkI 287 (341)
T TIGR03536 240 -MGTLSGGGNIVISVGEGCLLGANAGI--GIPLGDRCTVEAGLYITAGTKV 287 (341)
T ss_pred -eEEEeCCCceeEEECCCcEECCCCEE--eeEECCCCEECCCCEEeCCcEE
Confidence 44443 3 899999999999999 8999999999999999988765
No 90
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.56 E-value=1.2e-13 Score=111.81 Aligned_cols=104 Identities=25% Similarity=0.410 Sum_probs=84.6
Q ss_pred CCceECCCCEECCCcEEecC---eEECCCCEEccCcEEecCC---------CceEECCCCEECCCCEEecCCcCCCCCcc
Q 024153 51 KAPVVNKDVFLAPSASIIGD---VQVGRGSSIWYGCVLRGDV---------NSISIGSGTNIQDNSLVHVAKSNLAGKVL 118 (271)
Q Consensus 51 ~~~~i~~~~~I~~~~~i~~~---v~IG~~~~I~~~~~I~~~~---------~~~~IG~~~~I~~~~~I~~~~~~~~~~~~ 118 (271)
..+.|++++.|+|++.|.++ +.||++|.|+++++|.+.. ..+.||+++.|++++.+.
T Consensus 20 ~~I~ig~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~~i~----------- 88 (161)
T cd03359 20 QNIVLNGKTIIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVVN----------- 88 (161)
T ss_pred CCEEECCceEEcCCCEEeCCCcceEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECCCCEEE-----------
Confidence 36789999999999999876 7999999999999998642 357899999999999997
Q ss_pred ceEEcCCcEECcCcEEe-ceeeCCCcEEccCcEEccCcEECCCcEEcc
Q 024153 119 PTIIGDNVTVGHSAVLH-GCTVEDEAFVGMGATLLDGVYVEKHAMVAA 165 (271)
Q Consensus 119 ~~~Ig~~~~i~~~~~i~-~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~ 165 (271)
.+.|++++.|++++.|. ++.|+++++|+.++.|.+++.|++++++++
T Consensus 89 ~~~Ig~~v~Ig~~~~Ig~~~~I~~~~~i~~g~~V~~~~~i~~~~vv~g 136 (161)
T cd03359 89 AAQIGSYVHIGKNCVIGRRCIIKDCVKILDGTVVPPDTVIPPYSVVSG 136 (161)
T ss_pred eeEEcCCcEECCCCEEcCCCEECCCcEECCCCEECCCCEeCCCCEEec
Confidence 58899999999888773 377777777777777777666666666654
No 91
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=99.56 E-value=3e-14 Score=133.29 Aligned_cols=145 Identities=13% Similarity=0.157 Sum_probs=99.1
Q ss_pred ceECCCCEECCCcEEecCeEECCCCEEccCcEEecCC--CceEECCCCEECCCCEEecCCcCCC-------CCccceEEc
Q 024153 53 PVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDV--NSISIGSGTNIQDNSLVHVAKSNLA-------GKVLPTIIG 123 (271)
Q Consensus 53 ~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~--~~~~IG~~~~I~~~~~I~~~~~~~~-------~~~~~~~Ig 123 (271)
..+++.+.|++++.|.+++.|+.++.|++++.|.... .++.||++|.|++++.|....-... -....+.||
T Consensus 256 ~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~ 335 (451)
T TIGR01173 256 FDIRGTVEIGRDVEIDPNVILEGKVKIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLG 335 (451)
T ss_pred EEECCccEECCCCEEcCCeEEeCceEECCCCEECCCcEEeeeEecCCCEEeeecEEecccccCCcEECCeeEECCCCEEC
Confidence 3466777777777777777777777788888776442 3456677777776666653221100 001134444
Q ss_pred CCcEECcCcEE-----------------eceeeCCCcEEccCcEEcc-------CcEECCCcEEccCcEecCCceeCCCc
Q 024153 124 DNVTVGHSAVL-----------------HGCTVEDEAFVGMGATLLD-------GVYVEKHAMVAAGALVRQNTKIPCGE 179 (271)
Q Consensus 124 ~~~~i~~~~~i-----------------~~~~Ig~~~~Ig~~~~I~~-------~v~Ig~~~~Ig~~svV~~~~~I~~~~ 179 (271)
++|.|++++.+ .++.||++|+||+++.+.. +++||++++||+++.|.++++|++++
T Consensus 336 ~~~~Ig~~~~i~~~~ig~~~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~ 415 (451)
T TIGR01173 336 AGVHIGNFVETKNARIGKGSKAGHLSYLGDAEIGSNVNIGAGTITCNYDGANKHKTIIGDGVFIGSNTQLVAPVKVGDGA 415 (451)
T ss_pred CCcEEccceeecCcEECCCcEecceeeEeeeEEcCCcEECCCeEEeCcccccCCCCEECCCcEECCCCEEECCcEECCCC
Confidence 44444444332 2367777777777777754 58999999999999999999999999
Q ss_pred EEeccCceEccCCCHHHHH
Q 024153 180 VWGGNPARFLRKLTEEEMA 198 (271)
Q Consensus 180 vv~G~pa~~~~~~~~~~~~ 198 (271)
++++. +.+.+++++..+.
T Consensus 416 ~i~~g-~~v~~~v~~~~~~ 433 (451)
T TIGR01173 416 TIAAG-STVTKDVPEGALA 433 (451)
T ss_pred EEccC-CEECccCCCCcEE
Confidence 99654 8999999987764
No 92
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=99.55 E-value=6.3e-14 Score=104.55 Aligned_cols=79 Identities=24% Similarity=0.376 Sum_probs=63.5
Q ss_pred eEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEeceeeCCCcEEccCcEEccCcEECCCcEEccCcEecC
Q 024153 92 ISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQ 171 (271)
Q Consensus 92 ~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~ 171 (271)
+.||+++.|+++|.|.. ++.|+.++.+ ..+.++.||++|+|+.++.+..+++||++++|+++++|.+
T Consensus 23 ~~ig~~~~Ig~~~~i~~----------~~~i~~~~~~---~~~~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~ 89 (101)
T cd03354 23 IVIGETAVIGDNCTIYQ----------GVTLGGKGKG---GGKRHPTIGDNVVIGAGAKILGNITIGDNVKIGANAVVTK 89 (101)
T ss_pred EEECCCCEECCCCEEcC----------CCEECCCccC---CcCCCCEECCCcEEcCCCEEECcCEECCCCEECCCCEECc
Confidence 56677777777766642 3444444433 1356789999999999999999999999999999999999
Q ss_pred CceeCCCcEEeccC
Q 024153 172 NTKIPCGEVWGGNP 185 (271)
Q Consensus 172 ~~~I~~~~vv~G~p 185 (271)
+ +|+++++.|+|
T Consensus 90 ~--~~~~~~~~G~P 101 (101)
T cd03354 90 D--VPANSTVVGVP 101 (101)
T ss_pred c--cCCCCEEEeCC
Confidence 7 99999999997
No 93
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=99.55 E-value=5.5e-14 Score=121.57 Aligned_cols=103 Identities=17% Similarity=0.373 Sum_probs=89.3
Q ss_pred ECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCce-EECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcE
Q 024153 55 VNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSI-SIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAV 133 (271)
Q Consensus 55 i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~-~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~ 133 (271)
+..+++|.+.+.+.-++.||+++.|+++++|..+ + +||++ .| +++|. |++.||++|.|++++.
T Consensus 150 vp~gVRI~~~~rVRlGAyLGeGtvVm~~a~VN~n---AgtIG~~-iI--~g~I~----------HdvvIGd~~~IgpGvs 213 (319)
T TIGR03535 150 VPTGVRIGDADRVRLGAHLAEGTTVMHEGFVNFN---AGTLGAS-MV--EGRIS----------AGVVVGDGSDIGGGAS 213 (319)
T ss_pred CCCccEECCCceeeeccEECCCCEEcCCCEEccC---ceEecCc-eE--EEEEc----------cCCEECCCCEECCCce
Confidence 4568888888888889999999999999998865 6 68885 66 45664 6899999999999999
Q ss_pred Eec---------eeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCcee
Q 024153 134 LHG---------CTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKI 175 (271)
Q Consensus 134 i~~---------~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I 175 (271)
|.+ +.||++|+||++|.| ++.||++|+||+|++|.+++.|
T Consensus 214 I~G~LsGg~~~pV~IGe~~~IGagA~I--GI~IGd~~VVGAGaVVtkgT~v 262 (319)
T TIGR03535 214 IMGTLSGGGKEVISIGERCLLGANSGL--GISLGDDCVVEAGLYVTAGTKV 262 (319)
T ss_pred ecceecCCCcccEEECCCcEECCCCEE--CeEECCCCEECCCCEEeCCeEE
Confidence 644 899999999999999 8999999999999999998654
No 94
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=99.55 E-value=1.9e-14 Score=119.50 Aligned_cols=108 Identities=21% Similarity=0.265 Sum_probs=91.2
Q ss_pred eEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEe-----ceeeCCCcEE
Q 024153 71 VQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLH-----GCTVEDEAFV 145 (271)
Q Consensus 71 v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~-----~~~Ig~~~~I 145 (271)
-.|++++.|++++.|.++ +.||++|.|+++|+|.+.. +++.||+++.|+++|+|+ +++|++++.|
T Consensus 9 p~i~~~~~I~~~a~I~G~---V~IG~~~~I~~~a~I~gd~-------g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~I 78 (192)
T TIGR02287 9 PVVHPEAYVHPTAVLIGD---VILGKRCYVGPLASLRGDF-------GRIVLKEGANIQDNCVMHGFPGQDTVVEENGHV 78 (192)
T ss_pred CcCCCCcEECCCCEEEee---EEECCCCEECCCcEEEccC-------CceEECCCCEECCCeEEeccCCCCCeECCCCEE
Confidence 357899999999999877 8999999999999998632 368999999999999994 4899999999
Q ss_pred ccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEcc
Q 024153 146 GMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLR 190 (271)
Q Consensus 146 g~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~ 190 (271)
+.++.|. +++|+++|.||.++.+..++.|++++++. ..+.+.+
T Consensus 79 g~~a~I~-~siIg~~~~IG~ga~I~~g~~IG~~s~Vg-ags~V~~ 121 (192)
T TIGR02287 79 GHGAILH-GCIVGRNALVGMNAVVMDGAVIGENSIVA-ASAFVKA 121 (192)
T ss_pred CCCCEEc-CCEECCCCEECCCcccCCCeEECCCCEEc-CCCEECC
Confidence 9999775 58999999999998888888888888875 3355544
No 95
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=99.54 E-value=4.6e-14 Score=126.53 Aligned_cols=135 Identities=19% Similarity=0.321 Sum_probs=95.5
Q ss_pred EECCC-cEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCC------CCccceEEcCCcEECcCc
Q 024153 60 FLAPS-ASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLA------GKVLPTIIGDNVTVGHSA 132 (271)
Q Consensus 60 ~I~~~-~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~------~~~~~~~Ig~~~~i~~~~ 132 (271)
.+.|. .+|.+++.||.++.|.++++|.|. +.||++|.||++|.|....-... .....+.||++|.||+.+
T Consensus 257 l~dP~t~~i~~dv~ig~DvvI~p~v~l~G~---t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~~~VGPfA 333 (460)
T COG1207 257 LIDPATTYIRGDVEIGRDVVIEPNVILEGN---TVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEGATVGPFA 333 (460)
T ss_pred EeCCCeEEEcCcEEECCceEEecCcEEeee---EEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCCcccCCcc
Confidence 44454 457788999999999999999977 88888888888876653321100 112233344444333333
Q ss_pred EE-----------------------------------eceeeCCCcEEccCcEEcc-------CcEECCCcEEccCcEec
Q 024153 133 VL-----------------------------------HGCTVEDEAFVGMGATLLD-------GVYVEKHAMVAAGALVR 170 (271)
Q Consensus 133 ~i-----------------------------------~~~~Ig~~~~Ig~~~~I~~-------~v~Ig~~~~Ig~~svV~ 170 (271)
.+ .++.||.+|.||++++... .++||++++||++|.+-
T Consensus 334 ~LRPg~~L~~~~hIGNFVEvK~a~ig~gsKa~HLtYlGDA~iG~~~NiGAGtItcNYDG~nK~~T~IGd~vFiGSns~LV 413 (460)
T COG1207 334 RLRPGAVLGADVHIGNFVEVKKATIGKGSKAGHLTYLGDAEIGENVNIGAGTITCNYDGKNKFKTIIGDNVFIGSNSQLV 413 (460)
T ss_pred ccCCcCcccCCCeEeeeEEEecccccCCccccceeeeccceecCCceeccceEEEcCCCcccceeeecCCcEEccCCcEE
Confidence 33 2367777777777777643 28999999999999988
Q ss_pred CCceeCCCcEEeccCceEccCCCHHHHH
Q 024153 171 QNTKIPCGEVWGGNPARFLRKLTEEEMA 198 (271)
Q Consensus 171 ~~~~I~~~~vv~G~pa~~~~~~~~~~~~ 198 (271)
.-++|++++.++ ..+.+.+|+|+..+.
T Consensus 414 APV~IGd~a~ia-AGStIT~DVp~~aLa 440 (460)
T COG1207 414 APVTIGDGATIA-AGSTITKDVPEGALA 440 (460)
T ss_pred eeEEecCCcEEc-ccceEcccCCCCcee
Confidence 889999999984 568999999988764
No 96
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=99.54 E-value=1.3e-13 Score=118.54 Aligned_cols=141 Identities=18% Similarity=0.221 Sum_probs=92.0
Q ss_pred CCCceECCCCEECCCcEEe-----cCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcC
Q 024153 50 DKAPVVNKDVFLAPSASII-----GDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGD 124 (271)
Q Consensus 50 ~~~~~i~~~~~I~~~~~i~-----~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~ 124 (271)
.+.+.+.++++|++++.|. .++.||++|.|.++++|..+ +.||++|.|+.++.|.+... +...++++||+
T Consensus 104 ~p~a~i~~ga~Ig~~vvI~p~~Vniga~IGeGt~I~~~a~IG~~---v~IG~nv~I~~g~~IgG~~e--p~~~~~ViIgD 178 (269)
T TIGR00965 104 VPGAAVRQGAFIAKNVVLMPSYVNIGAYVDEGTMVDTWATVGSC---AQIGKNVHLSGGVGIGGVLE--PLQANPTIIED 178 (269)
T ss_pred CCCcEECCCcEECCCCEEeeeEEcCCcEECCCCEECCCcEECCC---CEECCCCEEcCCcccCCCcc--cCCCCCeEECC
Confidence 3444555555555555554 34556677777766666654 67777777777776643211 12346899999
Q ss_pred CcEECcCcEEe-ceeeCCCcEEccCcEEccCcEECCCc-------EEccCcEecCCcee---CCCcEEeccCceEccCCC
Q 024153 125 NVTVGHSAVLH-GCTVEDEAFVGMGATLLDGVYVEKHA-------MVAAGALVRQNTKI---PCGEVWGGNPARFLRKLT 193 (271)
Q Consensus 125 ~~~i~~~~~i~-~~~Ig~~~~Ig~~~~I~~~v~Ig~~~-------~Ig~~svV~~~~~I---~~~~vv~G~pa~~~~~~~ 193 (271)
+|+||+++.|. +++||++|.||++++|.++++|.+.. .|.++|+|.++..- +++++. .|.+++.++
T Consensus 179 nv~IGa~a~I~~GV~IG~gavIGaGavI~~~~~I~~~~~g~v~~~~vp~~svv~~g~~p~~~g~~~~~---~a~ivk~~d 255 (269)
T TIGR00965 179 NCFIGARSEIVEGVIVEEGSVISMGVFIGQSTKIYDRETGEIHYGRVPAGSVVVSGNLPSKDGKYSLY---CAVIVKKVD 255 (269)
T ss_pred CCEECCCCEEcCCCEECCCCEEeCCCEECCCCEEecccCCceeeeecCCCcEEecCCeecCCCccccc---eeEEEEEec
Confidence 99999999885 69999999999999999999988865 34555555544111 111221 267777776
Q ss_pred HHHHH
Q 024153 194 EEEMA 198 (271)
Q Consensus 194 ~~~~~ 198 (271)
+....
T Consensus 256 ~~t~~ 260 (269)
T TIGR00965 256 AKTRG 260 (269)
T ss_pred hhhhh
Confidence 55543
No 97
>PLN02472 uncharacterized protein
Probab=99.54 E-value=3.3e-14 Score=122.07 Aligned_cols=100 Identities=13% Similarity=0.235 Sum_probs=86.6
Q ss_pred EECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEe-----------ceeeC
Q 024153 72 QVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLH-----------GCTVE 140 (271)
Q Consensus 72 ~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~-----------~~~Ig 140 (271)
.|+.++.|.+++++.++ +.||++|.|+.+++|.+... .++||+++.|+++|+|+ +++||
T Consensus 61 ~i~~~~~I~p~a~i~G~---V~Ig~~a~I~~gavirgd~~-------~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG 130 (246)
T PLN02472 61 KVAVDAYVAPNVVLAGQ---VTVWDGASVWNGAVLRGDLN-------KITVGFCSNVQERCVLHAAWNSPTGLPAETLID 130 (246)
T ss_pred ccCCCCEECCCCEEecC---EEECCCCEEcCCCEEecCCc-------ceEECCCCEECCCCEEeecCccccCCCCCcEEC
Confidence 47889999999999987 99999999999999986433 68999999999999995 48999
Q ss_pred CCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEe
Q 024153 141 DEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWG 182 (271)
Q Consensus 141 ~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~ 182 (271)
++|.||.+|.|. +|+|+++|.||.+++|..++.|++++++.
T Consensus 131 ~~v~IG~~s~L~-~~~Igd~v~IG~~svI~~gavIg~~~~Ig 171 (246)
T PLN02472 131 RYVTIGAYSLLR-SCTIEPECIIGQHSILMEGSLVETHSILE 171 (246)
T ss_pred CCCEECCCcEEC-CeEEcCCCEECCCCEECCCCEECCCCEEC
Confidence 999999999884 68888888888888888888888877764
No 98
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=99.53 E-value=2.5e-13 Score=109.09 Aligned_cols=113 Identities=25% Similarity=0.342 Sum_probs=94.3
Q ss_pred cCCCceECCCCEECCCcEEecC---eEECCCCEEccCcEEecC-CCceEECCCCEECCCCEEecCCcCCCCCccceEEcC
Q 024153 49 FDKAPVVNKDVFLAPSASIIGD---VQVGRGSSIWYGCVLRGD-VNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGD 124 (271)
Q Consensus 49 ~~~~~~i~~~~~I~~~~~i~~~---v~IG~~~~I~~~~~I~~~-~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~ 124 (271)
+...+.||+++.|++++.|.+. +.||++|.|+++|.|.++ ..++.||+++.|++++.+. ++.||+
T Consensus 15 i~~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~-----------~~~Ig~ 83 (154)
T cd04650 15 VIGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVH-----------GAKVGN 83 (154)
T ss_pred EEeeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEE-----------CcEECC
Confidence 4456778999999999988876 899999999999999853 2358899999999999986 689999
Q ss_pred CcEECcCcEEe-ceeeCCCcEEccCcEEccCcEECCCcE-EccCcEecCC
Q 024153 125 NVTVGHSAVLH-GCTVEDEAFVGMGATLLDGVYVEKHAM-VAAGALVRQN 172 (271)
Q Consensus 125 ~~~i~~~~~i~-~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~-Ig~~svV~~~ 172 (271)
++.|+.++.+. ++.||+++++++++.+.++..++++++ .|..+.+.++
T Consensus 84 ~~~Ig~~~~i~~~~~Ig~~~~vg~~~~v~~g~~i~~~~v~~G~pa~~~~~ 133 (154)
T cd04650 84 YVIVGMGAILLNGAKIGDHVIIGAGAVVTPGKEIPDYSLVLGVPAKVVRK 133 (154)
T ss_pred CCEEcCCCEEeCCCEECCCCEECCCCEECCCcEeCCCCEEeccCceEecc
Confidence 99999999885 499999999999999999999999888 4555665544
No 99
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=99.53 E-value=2e-13 Score=109.84 Aligned_cols=112 Identities=23% Similarity=0.294 Sum_probs=91.8
Q ss_pred ECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEE-----eceeeCCCcEEcc
Q 024153 73 VGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVL-----HGCTVEDEAFVGM 147 (271)
Q Consensus 73 IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i-----~~~~Ig~~~~Ig~ 147 (271)
|..++.|+++++|.++ +.||++|.|+++|+|.... ..+.||++|.|+++|.| ++++||++|+|+.
T Consensus 3 i~~~~~i~~~a~i~g~---v~IG~~~~I~~~~~i~~~~-------~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~ 72 (155)
T cd04745 3 VDPSSFVHPTAVLIGD---VIIGKNCYIGPHASLRGDF-------GRIVIRDGANVQDNCVIHGFPGQDTVLEENGHIGH 72 (155)
T ss_pred cCCCeEECCCCEEEcc---EEECCCCEECCCcEEeCCC-------CcEEECCCCEECCCCEEeecCCCCeEEcCCCEECC
Confidence 5678888888988876 8999999999999998532 26899999999999999 4599999999999
Q ss_pred CcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEcc--CCCHHH
Q 024153 148 GATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLR--KLTEEE 196 (271)
Q Consensus 148 ~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~--~~~~~~ 196 (271)
++.+. ++.||++++|+++++|..++.|++++++. ..+.+.+ ++++..
T Consensus 73 ~~~i~-~~~Ig~~~~Ig~~~~I~~g~~Ig~~~~Ig-~~s~v~~~~~i~~~~ 121 (155)
T cd04745 73 GAILH-GCTIGRNALVGMNAVVMDGAVIGEESIVG-AMAFVKAGTVIPPRS 121 (155)
T ss_pred CcEEE-CCEECCCCEECCCCEEeCCCEECCCCEEC-CCCEeCCCCEeCCCC
Confidence 99875 58999999999999998888888888874 3355544 344443
No 100
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.53 E-value=7.8e-14 Score=130.53 Aligned_cols=141 Identities=16% Similarity=0.198 Sum_probs=90.1
Q ss_pred eECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecC----------CcC--CCCCccceE
Q 024153 54 VVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVA----------KSN--LAGKVLPTI 121 (271)
Q Consensus 54 ~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~----------~~~--~~~~~~~~~ 121 (271)
.|++++.|++++.|.+++.|+.++.|+++|+|... +.|. +|.|+++|.|..+ ..- +.-...++.
T Consensus 251 ~i~~~~~Ig~~~~i~~~~~I~~~~~ig~~~~I~~~---~~i~-~s~Ig~~~~I~~~~v~~sii~~~~~ig~~~~i~~~~~ 326 (448)
T PRK14357 251 YIHYDVEIGMDTIIYPMTFIEGKTRIGEDCEIGPM---TRIV-DCEIGNNVKIIRSECEKSVIEDDVSVGPFSRLREGTV 326 (448)
T ss_pred EEccceEECCCcEEcCCcEEEeeeEECCCcEECCC---ceec-ccEECCCCEEeeeEEEEEEEeCCcEECCCcEECCccc
Confidence 56666666666666666666666666666666543 3322 1344444444211 000 000112355
Q ss_pred EcCCcEECcCcEE-----------------eceeeCCCcEEccCcEEc-------cCcEECCCcEEccCcEecCCceeCC
Q 024153 122 IGDNVTVGHSAVL-----------------HGCTVEDEAFVGMGATLL-------DGVYVEKHAMVAAGALVRQNTKIPC 177 (271)
Q Consensus 122 Ig~~~~i~~~~~i-----------------~~~~Ig~~~~Ig~~~~I~-------~~v~Ig~~~~Ig~~svV~~~~~I~~ 177 (271)
||++|.|++++.+ .+++||++|+||+++++. .+++||++++||+++.|.++++|++
T Consensus 327 ig~~~~Ig~~~~i~~~~ig~~~~~~~~~~~~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~gv~Ig~ 406 (448)
T PRK14357 327 LKKSVKIGNFVEIKKSTIGENTKAQHLTYLGDATVGKNVNIGAGTITCNYDGKKKNPTFIEDGAFIGSNSSLVAPVRIGK 406 (448)
T ss_pred ccCCcEecCceeeeccEEcCCcCccccccccCcEECCCcEECCCcccccccccccCCcEECCCCEECCCCEEeCCcEECC
Confidence 5555555554433 236778888888887764 3589999999999999999999999
Q ss_pred CcEEeccCceEccCCCHHHHHH
Q 024153 178 GEVWGGNPARFLRKLTEEEMAF 199 (271)
Q Consensus 178 ~~vv~G~pa~~~~~~~~~~~~~ 199 (271)
+++++++ +.+.+++++..+..
T Consensus 407 ~~~i~ag-~~v~~~v~~~~~~~ 427 (448)
T PRK14357 407 GALIGAG-SVITEDVPPYSLAL 427 (448)
T ss_pred CCEEcCC-CEECCcCCCCcEEE
Confidence 9998655 99999998877643
No 101
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=99.53 E-value=2.5e-13 Score=113.96 Aligned_cols=127 Identities=16% Similarity=0.213 Sum_probs=89.0
Q ss_pred ECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEE
Q 024153 55 VNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVL 134 (271)
Q Consensus 55 i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i 134 (271)
+++++.|++++.|. ++.||+++.|++++.|.. +.||++|.|+.++.+. ++.||++|.|++++.+
T Consensus 5 ~~~~~~I~~~a~i~-~~~IG~~~~Ig~~a~I~~----s~IG~~s~I~~~~~i~-----------~~~IG~~~~I~~~v~I 68 (204)
T TIGR03308 5 LSPEPTLHPTAELT-ESKLGRYTEIGERTRLRE----VALGDYSYVMRDCDII-----------YTTIGKFCSIAAMVRI 68 (204)
T ss_pred cCCCCeECCCcEEe-ccEeCCCcEECCCcEEeC----CEECCCCEECCCcEEe-----------eeEECCCCEECCCCEE
Confidence 56777888888885 478999999999999973 6899999999999987 5889999999999887
Q ss_pred ecee-eCCCcE--------------EccCc-----EEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCH
Q 024153 135 HGCT-VEDEAF--------------VGMGA-----TLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTE 194 (271)
Q Consensus 135 ~~~~-Ig~~~~--------------Ig~~~-----~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~ 194 (271)
.... .-++.. ...+. ....++.||++++||.+++|.+++.|+++++++ ..+.+.+++++
T Consensus 69 ~~~~h~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~I~~gv~Ig~~~~I~-~gs~v~~~i~~ 147 (204)
T TIGR03308 69 NATNHPMERPTLHHFTYRAAMYFDDASDDADFFAWRRAKRVTIGHDVWIGHGAVILPGVTIGNGAVIA-AGAVVTKDVAP 147 (204)
T ss_pred CCCCCCCCcccccccccccccccccccccccccccccCCCeEECCCCEECCCCEECCCCEECCCCEEC-CCCEECCCCCC
Confidence 4310 000000 00000 123567777777777777777777777777764 33667777777
Q ss_pred HHHH
Q 024153 195 EEMA 198 (271)
Q Consensus 195 ~~~~ 198 (271)
..+.
T Consensus 148 ~~~~ 151 (204)
T TIGR03308 148 YTIV 151 (204)
T ss_pred CcEE
Confidence 6653
No 102
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.51 E-value=3.1e-13 Score=127.67 Aligned_cols=140 Identities=13% Similarity=0.205 Sum_probs=86.5
Q ss_pred ceECCCCEECCCcEEecCeEECCCCEEccCcEEecCC--CceEECCCCEE----------CCCCEEecCCcCCCCCccce
Q 024153 53 PVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDV--NSISIGSGTNI----------QDNSLVHVAKSNLAGKVLPT 120 (271)
Q Consensus 53 ~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~--~~~~IG~~~~I----------~~~~~I~~~~~~~~~~~~~~ 120 (271)
..|++++.|++++.|.+++.|+.++.|+++|.|..+. .++.||++|.| ++++.|.....- ..++
T Consensus 266 ~~i~~~v~ig~~~~I~~~~~i~~~v~Ig~~~~I~~~~~i~~~~Ig~~~~i~~~~~~~~iIg~~~~Ig~~~~i----~~~~ 341 (482)
T PRK14352 266 TWIDVDVTIGRDVVIHPGTQLLGRTTIGEDAVVGPDTTLTDVTVGEGASVVRTHGSESEIGAGATVGPFTYL----RPGT 341 (482)
T ss_pred EEEeCCEEECCCcEEeCCcEEeecCEECCCCEECCCCEEecCEECCCCEEeeeeeecCEEcCCCEECCCeEe----cCCc
Confidence 3455566666666666666666666666666665441 12223333222 222222211110 1122
Q ss_pred EEcC-----------------CcEECcCcEEeceeeCCCcEEccCcEEcc-------CcEECCCcEEccCcEecCCceeC
Q 024153 121 IIGD-----------------NVTVGHSAVLHGCTVEDEAFVGMGATLLD-------GVYVEKHAMVAAGALVRQNTKIP 176 (271)
Q Consensus 121 ~Ig~-----------------~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~-------~v~Ig~~~~Ig~~svV~~~~~I~ 176 (271)
.||+ ++.+++.+.+.+++||++|.||+++++.. +++||++++||.++.+.++++|+
T Consensus 342 vIg~~~~ig~~~~~~~~~I~~~~~i~~~~~i~~~~Ig~~~~IG~~~~i~~~~~~~~~~~~IGd~~~iG~~~~i~~~~~Ig 421 (482)
T PRK14352 342 VLGEEGKLGAFVETKNATIGRGTKVPHLTYVGDADIGEHSNIGASSVFVNYDGVNKHRTTIGSHVRTGSDTMFVAPVTVG 421 (482)
T ss_pred EEcCCCEECCcEEEcccEECCCcEEccCceecccEECCCcEECCCcEEeccccccCCCCeECCCcEECCCCEEeCCCEEC
Confidence 3332 23333333334578899999999988863 48999999999999999999999
Q ss_pred CCcEEeccCceEccCCCHHHH
Q 024153 177 CGEVWGGNPARFLRKLTEEEM 197 (271)
Q Consensus 177 ~~~vv~G~pa~~~~~~~~~~~ 197 (271)
++++++ ..+.+.+++++..+
T Consensus 422 ~~~~ig-ags~v~~~v~~~~~ 441 (482)
T PRK14352 422 DGAYTG-AGTVIREDVPPGAL 441 (482)
T ss_pred CCcEEC-CCCEEcCCCCCCcE
Confidence 999985 44888889887764
No 103
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=99.49 E-value=6.6e-13 Score=106.53 Aligned_cols=99 Identities=21% Similarity=0.380 Sum_probs=88.4
Q ss_pred ECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEec-----eeeCCCcEEcc
Q 024153 73 VGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHG-----CTVEDEAFVGM 147 (271)
Q Consensus 73 IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~-----~~Ig~~~~Ig~ 147 (271)
+|++++|+++++|.++ +.||++|.|++++.|.+.. .+++||+++.|++++.|.+ +.||++|+|+.
T Consensus 2 ~~~~~~i~~~a~i~g~---v~ig~~~~I~~~~~I~~~~-------~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~ 71 (153)
T cd04645 2 IDPSAFIAPNATVIGD---VTLGEGSSVWFGAVLRGDV-------NPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGH 71 (153)
T ss_pred ccCCeEECCCCEEEEe---EEECCCcEEcCCeEEECCC-------CceEECCCCEECCCcEEecCCCCCeEEcCCcEECC
Confidence 6888999999999876 8999999999999998643 3789999999999999987 69999999999
Q ss_pred CcEEccCcEECCCcEEccCcEecCCceeCCCcEEe
Q 024153 148 GATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWG 182 (271)
Q Consensus 148 ~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~ 182 (271)
++.+.. +.||++++|++++.|..++.|++++.+.
T Consensus 72 ~~~i~~-~~Ig~~~~Ig~~~~v~~~~~ig~~~~ig 105 (153)
T cd04645 72 GAVLHG-CTIGDNCLIGMGAIILDGAVIGKGSIVA 105 (153)
T ss_pred CcEEee-eEECCCCEECCCCEEcCCCEECCCCEEC
Confidence 999965 8999999999999999888888888774
No 104
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=99.47 E-value=1.2e-12 Score=113.49 Aligned_cols=117 Identities=24% Similarity=0.333 Sum_probs=68.7
Q ss_pred CceECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCC----CCCccceEEcCCcE
Q 024153 52 APVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNL----AGKVLPTIIGDNVT 127 (271)
Q Consensus 52 ~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~----~~~~~~~~Ig~~~~ 127 (271)
.+.++++++|++++.|.+ ..++.++.|+++++|... +.||++|.||++|+|..+..-. ....++++||++|.
T Consensus 109 ~a~V~~ga~Ig~gavI~p-~~V~iGa~Ig~gt~I~~~---a~IG~~a~IG~nv~I~~gv~I~g~~~~~~~~~viIgDnv~ 184 (272)
T PRK11830 109 GAVVRRGAYIAPNVVLMP-SYVNIGAYVDEGTMVDTW---ATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIEDNCF 184 (272)
T ss_pred CeEECCCCEECCCcEEEE-EEECCCCEECCCcEEccc---cEECCCCEECCCcEECCCccCCCCccccCcCCeEEcCCCE
Confidence 344555556666655552 334444444445544432 3444444444444444332110 11123688888888
Q ss_pred ECcCcEE-eceeeCCCcEEccCcEEccCcEECCCc-------EEccCcEecCC
Q 024153 128 VGHSAVL-HGCTVEDEAFVGMGATLLDGVYVEKHA-------MVAAGALVRQN 172 (271)
Q Consensus 128 i~~~~~i-~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~-------~Ig~~svV~~~ 172 (271)
||.++.+ .++.||++|.|++++.|.+++.|++.+ .|-++|+|.++
T Consensus 185 IGa~s~I~~Gv~IGdgavIgag~vV~~gt~I~~~~~g~v~~g~vp~~svvv~g 237 (272)
T PRK11830 185 IGARSEVVEGVIVEEGSVLGMGVFLGQSTKIYDRETGEVHYGRVPAGSVVVPG 237 (272)
T ss_pred ECCCCEEcCCCEECCCCEEcCCCEEcCCeEECcCCCCcEEeeecCCCcEEecC
Confidence 8888877 568888888888888888888888654 35566666544
No 105
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.46 E-value=6.6e-13 Score=124.61 Aligned_cols=143 Identities=14% Similarity=0.189 Sum_probs=93.8
Q ss_pred ECCCCEECCCcEEecCeEECCCCEEccCcEEecCC--CceEECCCCEECCCCEEecCCcCCC-------CCccceEEcCC
Q 024153 55 VNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDV--NSISIGSGTNIQDNSLVHVAKSNLA-------GKVLPTIIGDN 125 (271)
Q Consensus 55 i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~--~~~~IG~~~~I~~~~~I~~~~~~~~-------~~~~~~~Ig~~ 125 (271)
+...+.+++++.|.+++.|+.++.|++++.|.... .++.||++|.|++++.|....-... ....++.|+++
T Consensus 262 ~~~~~~ig~~~~I~~~~~i~~~v~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~ 341 (456)
T PRK09451 262 LRGTLTHGRDVEIDTNVIIEGNVTLGNRVKIGAGCVLKNCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAEG 341 (456)
T ss_pred ECCcEEECCCCEEcCCeEEecCcEECCCCEECCCceEecCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEECCC
Confidence 34455677777777777777777778887776542 2455666666666666542211100 00112233333
Q ss_pred cEECcCcEE-----------------eceeeCCCcEEccCcEEcc-------CcEECCCcEEccCcEecCCceeCCCcEE
Q 024153 126 VTVGHSAVL-----------------HGCTVEDEAFVGMGATLLD-------GVYVEKHAMVAAGALVRQNTKIPCGEVW 181 (271)
Q Consensus 126 ~~i~~~~~i-----------------~~~~Ig~~~~Ig~~~~I~~-------~v~Ig~~~~Ig~~svV~~~~~I~~~~vv 181 (271)
+.|++++.+ .++.||++|.||+++++.. +++||++|+||++++|.++++|++++++
T Consensus 342 ~~ig~~~~i~~~~i~~~~~~~~~~~~g~~~ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~~i 421 (456)
T PRK09451 342 AHVGNFVEMKKARLGKGSKAGHLTYLGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATI 421 (456)
T ss_pred ceeccceeeeceeeCCCCccCccccccccEECCCCEEcCCeEEecccCcccCCCEECCCcEECCCCEEeCCcEECCCCEE
Confidence 333333222 2357888888888887743 4889999999999999999999999998
Q ss_pred eccCceEccCCCHHHHH
Q 024153 182 GGNPARFLRKLTEEEMA 198 (271)
Q Consensus 182 ~G~pa~~~~~~~~~~~~ 198 (271)
++. +.+.+++++....
T Consensus 422 ~~g-s~v~~~v~~~~~~ 437 (456)
T PRK09451 422 GAG-TTVTRDVAENELV 437 (456)
T ss_pred CCC-CEEccccCCCCEE
Confidence 654 9999999876653
No 106
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.46 E-value=8.1e-13 Score=123.99 Aligned_cols=62 Identities=10% Similarity=0.231 Sum_probs=48.6
Q ss_pred eeeCCCcEEccCcEEcc-------CcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHHHHH
Q 024153 137 CTVEDEAFVGMGATLLD-------GVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAF 199 (271)
Q Consensus 137 ~~Ig~~~~Ig~~~~I~~-------~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~~~~ 199 (271)
++||++|.||+++.+.. +++||+++++|++|.|.++++|+++++++. .+.+.++++++.+..
T Consensus 369 ~~ig~~~~ig~~~~~~~~~~~~~~~~~igd~~~ig~~s~i~~~~~ig~~~~v~~-~~~v~~~~~~~~~~~ 437 (458)
T PRK14354 369 AEVGENVNIGCGTITVNYDGKNKFKTIIGDNAFIGCNSNLVAPVTVGDNAYIAA-GSTITKDVPEDALAI 437 (458)
T ss_pred cccCCceEEcCceeecccccccccCCEECCCcEEccCCEEeCCcEECCCCEECC-CCEECCCCCCCCEEE
Confidence 45555666666665543 588999999999999999999999999854 489999999877643
No 107
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=99.46 E-value=9.4e-13 Score=108.66 Aligned_cols=107 Identities=27% Similarity=0.444 Sum_probs=91.0
Q ss_pred CCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEE-eceeeCCCcEEccCcEEccC
Q 024153 76 GSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVL-HGCTVEDEAFVGMGATLLDG 154 (271)
Q Consensus 76 ~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i-~~~~Ig~~~~Ig~~~~I~~~ 154 (271)
.+.+++.+.+.++ +.||++|.|+++++|.. +++||++|.|+.++.| +++.||++|+|+.++.+.++
T Consensus 84 ~~~i~~~~~i~~~---~~ig~~~~i~~~~~i~~----------~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~ 150 (197)
T cd03360 84 ATLIHPSAVVSPS---AVIGEGCVIMAGAVINP----------DARIGDNVIINTGAVIGHDCVIGDFVHIAPGVVLSGG 150 (197)
T ss_pred ceEECCCeEECCC---CEECCCCEEcCCCEECC----------CCEECCCeEECCCCEECCCCEECCCCEECCCCEEcCC
Confidence 3556666666544 67888888888888874 6889999999999998 46999999999999999999
Q ss_pred cEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHH
Q 024153 155 VYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEE 196 (271)
Q Consensus 155 v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~ 196 (271)
++||++|+|++++.|.+++.|++++++ |..+.+.+++++..
T Consensus 151 ~~ig~~~~ig~~~~v~~~~~ig~~~~v-~~~~~v~~~~~~~~ 191 (197)
T cd03360 151 VTIGEGAFIGAGATIIQGVTIGAGAII-GAGAVVTKDVPDGS 191 (197)
T ss_pred cEECCCCEECCCCEEcCCCEECCCCEE-CCCCEEcCCCCCCC
Confidence 999999999999999999999999987 66788888876543
No 108
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=99.44 E-value=1.5e-12 Score=108.39 Aligned_cols=106 Identities=26% Similarity=0.446 Sum_probs=90.3
Q ss_pred CEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEe-ceeeCCCcEEccCcEEccCc
Q 024153 77 SSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLH-GCTVEDEAFVGMGATLLDGV 155 (271)
Q Consensus 77 ~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~-~~~Ig~~~~Ig~~~~I~~~v 155 (271)
+.+.+.+.+..+ +.||++|.|+++++|.. +++||++|.|+.++.|. ++.||++++|+.++.+.+++
T Consensus 88 ~~i~~~a~i~~~---~~ig~~~~i~~~~~i~~----------~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~ 154 (201)
T TIGR03570 88 TLIHPSAIVSPS---ASIGEGTVIMAGAVINP----------DVRIGDNVIINTGAIVEHDCVIGDYVHIAPGVTLSGGV 154 (201)
T ss_pred EEecCCeEECCC---CEECCCCEECCCCEECC----------CCEECCCcEECCCCEEcCCCEECCCCEECCCCEEeCCc
Confidence 455666666543 67888899988888874 68899999999999995 59999999999999999999
Q ss_pred EECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHH
Q 024153 156 YVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEE 196 (271)
Q Consensus 156 ~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~ 196 (271)
+||++|+|++++++.+++.|++++++ |.++.+.+++++..
T Consensus 155 ~ig~~~~ig~~~~v~~~~~i~~~~~i-~~~~~v~~~~~~~~ 194 (201)
T TIGR03570 155 VIGEGVFIGAGATIIQGVTIGAGAIV-GAGAVVTKDIPDGG 194 (201)
T ss_pred EECCCCEECCCCEEeCCCEECCCCEE-CCCCEECCcCCCCC
Confidence 99999999999999999999999987 66688888877543
No 109
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=99.42 E-value=1.2e-12 Score=128.06 Aligned_cols=105 Identities=22% Similarity=0.293 Sum_probs=84.9
Q ss_pred cCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEeceeeCCCcEEccC
Q 024153 69 GDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMG 148 (271)
Q Consensus 69 ~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~ 148 (271)
-+++||+|+.|++ ..+. ..+.++||+||.|+++|.+.+. .+.+ ....+..++||++|+||++
T Consensus 111 lGa~IG~~v~I~~-~~~~-~~~li~IG~~~~I~~~v~l~~~-----------~~~~-----~~l~~g~i~IG~~~~IG~~ 172 (695)
T TIGR02353 111 LGAKIGKGVDIGS-LPPV-CTDLLTIGAGTIVRKEVMLLGY-----------RAER-----GRLHTGPVTLGRDAFIGTR 172 (695)
T ss_pred cCCEECCCCEEEe-eecc-cCCceEECCCCEECCCCEEEcc-----------cCCC-----CceeecCcEECCCcEECCC
Confidence 3678888888877 3332 3456899999999999999742 1111 1123355899999999999
Q ss_pred cEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccC
Q 024153 149 ATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRK 191 (271)
Q Consensus 149 ~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~ 191 (271)
|+|.++++||++++|+++|.|.++..|++++++.|+||+.++.
T Consensus 173 s~I~~g~~Igd~a~vgagS~V~~g~~v~~~~~~~G~PA~~~~~ 215 (695)
T TIGR02353 173 STLDIDTSIGDGAQLGHGSALQGGQSIPDGERWHGSPAQKTGA 215 (695)
T ss_pred CEEcCCCEECCCCEECCCCEecCCcccCCCCEEEeeCCEEecc
Confidence 9999999999999999999999977799999999999999865
No 110
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=99.39 E-value=4.1e-12 Score=99.51 Aligned_cols=103 Identities=13% Similarity=0.151 Sum_probs=74.2
Q ss_pred hcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcE
Q 024153 48 IFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVT 127 (271)
Q Consensus 48 ~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~ 127 (271)
.+...+.|++++.|.+++.+..++.||++|.|.. +|... +.||++|.|+++|.|...... ....++.||++|+
T Consensus 9 ~V~~~a~IG~GtvI~~gavV~~~a~IG~~~iIn~--~ig~~---a~Ighd~~IG~~~~I~~~l~G--~~~~pV~IG~~~~ 81 (147)
T cd04649 9 RVRLGAYLAEGTTVMHEGFVNFNAGTLGNCMVEG--RISSG---VIVGKGSDVGGGASIMGTLSG--GGNNVISIGKRCL 81 (147)
T ss_pred EECCCCEECCCcEECCCCEEccCCEECCCeEECC--cccCC---EEECCCCEECCCCEEEEECCC--CcccCEEECCCCE
Confidence 3455666777777777777777777777777752 22222 567777888877777732111 1223599999999
Q ss_pred ECcCcEEeceeeCCCcEEccCcEEccCcEEC
Q 024153 128 VGHSAVLHGCTVEDEAFVGMGATLLDGVYVE 158 (271)
Q Consensus 128 i~~~~~i~~~~Ig~~~~Ig~~~~I~~~v~Ig 158 (271)
||.++.| ++.||++|.||++++|..+++|-
T Consensus 82 IG~ga~I-gv~IG~~~vIGaGsvV~k~t~i~ 111 (147)
T cd04649 82 LGANSGI-GISLGDNCIVEAGLYVTAGTKVT 111 (147)
T ss_pred ECCCCEE-eEEECCCCEECCCCEEeCCeEEE
Confidence 9999999 89999999999999998887664
No 111
>PRK10502 putative acyl transferase; Provisional
Probab=99.36 E-value=6.9e-12 Score=103.50 Aligned_cols=115 Identities=16% Similarity=0.191 Sum_probs=83.7
Q ss_pred CeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEeceeeCCCcEE-ccC
Q 024153 70 DVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFV-GMG 148 (271)
Q Consensus 70 ~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~Ig~~~~I-g~~ 148 (271)
++.||+++.|++++.|.. +.++.||++|.|++++.|... ..++||++|.|+.++.|... ++... ...
T Consensus 51 ga~iG~~~~I~~~a~i~~-~~~~~IG~~~~Ig~~~~I~~~--------~~v~IG~~~~I~~~~~I~~~---~h~~~~~~~ 118 (182)
T PRK10502 51 GAKIGKGVVIRPSVRITY-PWKLTIGDYAWIGDDVWLYNL--------GEITIGAHCVISQKSYLCTG---SHDYSDPHF 118 (182)
T ss_pred ccccCCCcEEcCCEEEec-CCeEEECCCeEECCCceeccc--------CceEECCCcEECCCeEEECC---CCCCcCCCc
Confidence 467888888888888874 356899999999999999742 25788888888877766321 11100 011
Q ss_pred cEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHHH
Q 024153 149 ATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEM 197 (271)
Q Consensus 149 ~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~~ 197 (271)
..+...++||++|+||++++|.++++|+++++++ ..+.+.++++++.+
T Consensus 119 ~~~~~~i~Igd~~~Ig~~a~I~~Gv~Ig~~~vIg-a~svV~~~v~~~~v 166 (182)
T PRK10502 119 DLNTAPIVIGEGCWLAADVFVAPGVTIGSGAVVG-ARSSVFKSLPANTI 166 (182)
T ss_pred ccccCCEEEcCCcEEcCCCEEcCCCEECCCCEEC-CCCEEecccCCCcE
Confidence 2345668889999999999998888999998885 44888888887654
No 112
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=99.33 E-value=1.4e-11 Score=94.29 Aligned_cols=108 Identities=20% Similarity=0.226 Sum_probs=67.4
Q ss_pred ECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEeceeeCCCcEEccCcEEc
Q 024153 73 VGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLL 152 (271)
Q Consensus 73 IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~ 152 (271)
||+++.|++++.|.++ +.||++|.|++++.|.. ++.||++|.|++++.+.+..+.+.. +..++. .
T Consensus 1 ig~~~~I~~~~~i~~~---~~Ig~~~~I~~~~~i~~----------~~~Ig~~~~I~~~~~i~~~~~~~~~-~~~~~~-~ 65 (119)
T cd03358 1 IGDNCIIGTNVFIEND---VKIGDNVKIQSNVSIYE----------GVTIEDDVFIGPNVVFTNDLYPRSK-IYRKWE-L 65 (119)
T ss_pred CCCCCEECCCcEECCC---cEECCCcEECCCcEEeC----------CeEECCCcEEcCCeEEecCCCCccc-cccccc-c
Confidence 3566666666666654 67777777777777752 5777777777777777654433322 222333 2
Q ss_pred cCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHH
Q 024153 153 DGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEE 196 (271)
Q Consensus 153 ~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~ 196 (271)
.+++||++|+|++++++.+++.|++++++. ..+.+.+++++..
T Consensus 66 ~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~i~-~~~~v~~~i~~~~ 108 (119)
T cd03358 66 KGTTVKRGASIGANATILPGVTIGEYALVG-AGAVVTKDVPPYA 108 (119)
T ss_pred CCcEECCCcEECcCCEEeCCcEECCCCEEc-cCCEEeCcCCCCe
Confidence 446777777777777776666777776663 3466656665544
No 113
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=99.32 E-value=7.5e-12 Score=122.54 Aligned_cols=106 Identities=26% Similarity=0.433 Sum_probs=84.1
Q ss_pred CCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEeceeeCCC
Q 024153 63 PSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDE 142 (271)
Q Consensus 63 ~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~Ig~~ 142 (271)
+.....-+++||+++.|........ ..++||++|.|+++|.|..+.. .+... .+.+++||++
T Consensus 590 ~~~lr~lGa~IG~~v~i~~~~~~~~--dlv~IGd~~~I~~~~~i~~h~~-----------~~~~~-----~~~~v~IG~~ 651 (695)
T TIGR02353 590 PAILRLLGVKIGRGVYIDGTDLTER--DLVTIGDDSTLNEGSVIQTHLF-----------EDRVM-----KSDTVTIGDG 651 (695)
T ss_pred HHHHHHCCCEECCCeEECCeeccCC--CCeEECCCCEECCCCEEEeccc-----------ccccc-----ccCCeEECCC
Confidence 3334445777888888876655543 3479999999999999975211 11111 3456999999
Q ss_pred cEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCc
Q 024153 143 AFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPA 186 (271)
Q Consensus 143 ~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa 186 (271)
|+||++++|.++++||++++|+++|+|.++..+++++++.|+||
T Consensus 652 ~~IG~~a~V~~g~~IGd~a~Ig~~SvV~~g~~vp~~s~~~G~Pa 695 (695)
T TIGR02353 652 ATLGPGAIVLYGVVMGEGSVLGPDSLVMKGEEVPAHTRWRGNPA 695 (695)
T ss_pred CEECCCCEECCCCEECCCCEECCCCEEcCCcccCCCCEEEeccC
Confidence 99999999999999999999999999999888999999999996
No 114
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.31 E-value=4.3e-11 Score=89.23 Aligned_cols=86 Identities=20% Similarity=0.272 Sum_probs=61.6
Q ss_pred cCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEeceeeCCCcEEccC
Q 024153 69 GDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMG 148 (271)
Q Consensus 69 ~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~ 148 (271)
+++.+++++.|.+++.+.+. +.||++|.|++++.|.. +++||++|.|+. .+.++.|++++.++.+
T Consensus 10 g~v~ig~~~~I~~~~~i~g~---v~IG~~~~Ig~~~~I~~----------~v~IG~~~~Ig~--~i~~svi~~~~~i~~~ 74 (101)
T cd05635 10 GPIYIGKDAVIEPFAVIEGP---VYIGPGSRVKMGARIYG----------NTTIGPTCKIGG--EVEDSIIEGYSNKQHD 74 (101)
T ss_pred CCEEECCCCEECCCCEEeCC---CEECCCCEECCCCEEeC----------cCEECCCCEECC--EECccEEcCCCEecCc
Confidence 35777777878777777755 77888888888888764 577777777764 4566777777777777
Q ss_pred cEEccCcEECCCcEEccCcEec
Q 024153 149 ATLLDGVYVEKHAMVAAGALVR 170 (271)
Q Consensus 149 ~~I~~~v~Ig~~~~Ig~~svV~ 170 (271)
+.|. +++||+++.|++++...
T Consensus 75 ~~lg-~siIg~~v~ig~~~~~~ 95 (101)
T cd05635 75 GFLG-HSYLGSWCNLGAGTNNS 95 (101)
T ss_pred CEEe-eeEECCCCEECCCceec
Confidence 7764 67777777777766543
No 115
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=99.30 E-value=2.5e-11 Score=101.52 Aligned_cols=117 Identities=15% Similarity=0.134 Sum_probs=83.4
Q ss_pred EECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEece-eeCCCcEEccCcE
Q 024153 72 QVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGC-TVEDEAFVGMGAT 150 (271)
Q Consensus 72 ~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~-~Ig~~~~Ig~~~~ 150 (271)
.+|+++.|.+.+.+. ...++.||+++.|+.+|+|... +.++||++|.|++++.|... .--+...-..+..
T Consensus 57 ~ig~~~~I~~~~~~~-~g~ni~IG~~v~In~~~~I~d~--------~~I~IGd~v~Ig~~v~I~~~~h~~~~~~r~~g~~ 127 (203)
T PRK09527 57 TVGENAWVEPPVYFS-YGSNIHIGRNFYANFNLTIVDD--------YTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEM 127 (203)
T ss_pred hcCCCcEEcCCEEEe-eCCCcEEcCCcEECCCcEEecC--------CCEEECCCCEECCCCEEEeCCCCCChhhcccccc
Confidence 478888888888874 2245899999999999999742 36899999999999988531 0000000112333
Q ss_pred EccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHHHH
Q 024153 151 LLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMA 198 (271)
Q Consensus 151 I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~~~ 198 (271)
....++||++|+||++++|.++++|+++++++. .+.+.+++++..+.
T Consensus 128 ~~~pi~IGd~v~IG~~~~I~~gv~IG~~~vIga-gsvV~kdvp~~~v~ 174 (203)
T PRK09527 128 YSFPITIGNNVWIGSHVVINPGVTIGDNSVIGA-GSVVTKDIPPNVVA 174 (203)
T ss_pred ccCCeEECCCcEECCCCEEcCCCEECCCCEECC-CCEEcccCCCCcEE
Confidence 445688888888888888888888888888754 47888888877654
No 116
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.29 E-value=2.4e-11 Score=111.45 Aligned_cols=103 Identities=19% Similarity=0.393 Sum_probs=74.2
Q ss_pred ECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEE
Q 024153 55 VNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVL 134 (271)
Q Consensus 55 i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i 134 (271)
+..++.+.+++.|++++.| .++.|+++|+|.+...++.||++|.|+++|.|. ++.|++++.|++++.+
T Consensus 273 ~~~~~~~~~~~~i~~~~~i-~~~~Ig~~~~I~~~v~~s~ig~~~~I~~~~~i~-----------~svi~~~~~i~~~~~i 340 (380)
T PRK05293 273 IYSVNPNLPPQYIAENAKV-KNSLVVEGCVVYGTVEHSVLFQGVQVGEGSVVK-----------DSVIMPGAKIGENVVI 340 (380)
T ss_pred eecCCcCCCCCEECCCCEE-ecCEECCCCEEcceecceEEcCCCEECCCCEEE-----------CCEEeCCCEECCCeEE
Confidence 3344444555555555555 355666666665433457899999999999987 6889999999999999
Q ss_pred eceeeCCCcEEccCcEEccC----cEECCCcEEccCcEe
Q 024153 135 HGCTVEDEAFVGMGATLLDG----VYVEKHAMVAAGALV 169 (271)
Q Consensus 135 ~~~~Ig~~~~Ig~~~~I~~~----v~Ig~~~~Ig~~svV 169 (271)
.+++|++++.|+.++.+.++ .+||+++.|..++++
T Consensus 341 ~~~ii~~~~~i~~~~~i~~~~~~~~~ig~~~~~~~~~~~ 379 (380)
T PRK05293 341 ERAIIGENAVIGDGVIIGGGKEVITVIGENEVIGVGTVI 379 (380)
T ss_pred eEEEECCCCEECCCCEEcCCCceeEEEeCCCCCCCCcEe
Confidence 99999999999999888775 556666666555544
No 117
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.29 E-value=3.8e-11 Score=85.05 Aligned_cols=77 Identities=29% Similarity=0.495 Sum_probs=52.8
Q ss_pred ECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEeceeeCCCcEEccCcEEc
Q 024153 73 VGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLL 152 (271)
Q Consensus 73 IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~ 152 (271)
||+++.|++++.|.. ..||++|.|++++.|. ++.|++++.|++++.+.++.|++++.|+.++.+.
T Consensus 2 ig~~~~I~~~~~i~~----s~ig~~~~ig~~~~i~-----------~s~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~ 66 (79)
T cd05787 2 IGRGTSIGEGTTIKN----SVIGRNCKIGKNVVID-----------NSYIWDDVTIEDGCTIHHSIVADGAVIGKGCTIP 66 (79)
T ss_pred ccCCCEECCCCEEec----cEECCCCEECCCCEEe-----------CcEEeCCCEECCCCEEeCcEEcCCCEECCCCEEC
Confidence 456666666666652 4677777777777775 4677777777777777777777777777776666
Q ss_pred cCcEECCCcEEc
Q 024153 153 DGVYVEKHAMVA 164 (271)
Q Consensus 153 ~~v~Ig~~~~Ig 164 (271)
.+++|++++.||
T Consensus 67 ~~~~v~~~~~ig 78 (79)
T cd05787 67 PGSLISFGVVIG 78 (79)
T ss_pred CCCEEeCCcEeC
Confidence 666666666554
No 118
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=99.28 E-value=2.5e-11 Score=103.13 Aligned_cols=118 Identities=20% Similarity=0.325 Sum_probs=79.7
Q ss_pred CeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCc-EEeceeeCCCcEEccC
Q 024153 70 DVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSA-VLHGCTVEDEAFVGMG 148 (271)
Q Consensus 70 ~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~-~i~~~~Ig~~~~Ig~~ 148 (271)
++.++.+|.|.-.+++.+ ...||+||.|+.++.|.+--. .+...++.||+||.||+++ .+.|+.+|++|.|+++
T Consensus 138 gA~~~~gtMVd~~as~G~---~a~VGkn~higgGa~I~GVLe--p~~a~Pv~IgdncliGAns~~veGV~vGdg~VV~aG 212 (271)
T COG2171 138 GAGTGEGTMVDGRASVGS---CAQVGKNSHIGGGASIGGVLE--PLQANPVIIGDNCLIGANSEVVEGVIVGDGCVVAAG 212 (271)
T ss_pred CcccCcceEEeeeeeeec---cEEECCCcccCCcceEeEEec--CCCCCCeEECCccEeccccceEeeeEeCCCcEEecc
Confidence 334444444444444443 378888888888888876333 2345699999999999998 7899999999999999
Q ss_pred cEEccCcEECCCc--EEccCcEecCCceeCCCcEEeccCceEccCCCHHH
Q 024153 149 ATLLDGVYVEKHA--MVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEE 196 (271)
Q Consensus 149 ~~I~~~v~Ig~~~--~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~ 196 (271)
+.|.+++.|.+-. -+ ++++|..+ .+| +.... ..+++++.++...
T Consensus 213 v~I~~~tki~~~~~g~~-~~svv~~~-~lp-g~~~~-~~~~ivk~vd~kt 258 (271)
T COG2171 213 VFITQDTKIYDRVAGRV-AGSVVVAG-TLP-GGLSL-YCASIVKQVDAKT 258 (271)
T ss_pred eEEeCCcceEEeecccc-ccceEeec-ccC-CCcce-eeeeeeeehhhhh
Confidence 9999999887632 23 55665544 344 11111 1246777776555
No 119
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.28 E-value=8.2e-11 Score=87.71 Aligned_cols=83 Identities=27% Similarity=0.362 Sum_probs=47.6
Q ss_pred ceECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCc
Q 024153 53 PVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSA 132 (271)
Q Consensus 53 ~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~ 132 (271)
+.+++++.|.+++.+.+++.||+++.|++++.|.+. +.||++|.|+. .|. ++.|++++.+.+++
T Consensus 12 v~ig~~~~I~~~~~i~g~v~IG~~~~Ig~~~~I~~~---v~IG~~~~Ig~--~i~-----------~svi~~~~~i~~~~ 75 (101)
T cd05635 12 IYIGKDAVIEPFAVIEGPVYIGPGSRVKMGARIYGN---TTIGPTCKIGG--EVE-----------DSIIEGYSNKQHDG 75 (101)
T ss_pred EEECCCCEECCCCEEeCCCEECCCCEECCCCEEeCc---CEECCCCEECC--EEC-----------ccEEcCCCEecCcC
Confidence 455566666666666666666666666666666543 55555555543 232 45555556666655
Q ss_pred EEeceeeCCCcEEccCcEE
Q 024153 133 VLHGCTVEDEAFVGMGATL 151 (271)
Q Consensus 133 ~i~~~~Ig~~~~Ig~~~~I 151 (271)
.|.+++||+++.||+++..
T Consensus 76 ~lg~siIg~~v~ig~~~~~ 94 (101)
T cd05635 76 FLGHSYLGSWCNLGAGTNN 94 (101)
T ss_pred EEeeeEECCCCEECCCcee
Confidence 5555666666666655544
No 120
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=99.28 E-value=6.2e-11 Score=98.65 Aligned_cols=129 Identities=12% Similarity=0.197 Sum_probs=89.4
Q ss_pred EECCCcEE--ecCeEECCCCEEccCcEEec-CCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEec
Q 024153 60 FLAPSASI--IGDVQVGRGSSIWYGCVLRG-DVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHG 136 (271)
Q Consensus 60 ~I~~~~~i--~~~v~IG~~~~I~~~~~I~~-~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~ 136 (271)
+|.++..+ +.++.+|+++.++.++.+.. +.+.+.||++|.|++++.|... .+++||++|.|++++.|.+
T Consensus 31 ~i~~pf~~~~~~~I~iG~~v~i~~~~ri~~~~~~~i~IG~~v~Ig~~v~I~~~--------~~v~IG~~v~Ig~~v~I~~ 102 (192)
T PRK09677 31 IIRFPFYIRNDGSINFGEGFTSGVGLRLDAFGRGKLFFGDNVQVNDYVHIACI--------ESITIGRDTLIASKVFITD 102 (192)
T ss_pred EEcCCEEEcCCCeEEECCceEECCCeEEEecCCCeEEECCCCEECCCcEEccC--------ceEEECCCCEECCCeEEEC
Confidence 66665554 35688999999999999843 3456999999999999999742 3689999999999998865
Q ss_pred eeeC----CCcEEccC------cEEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHHH
Q 024153 137 CTVE----DEAFVGMG------ATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEM 197 (271)
Q Consensus 137 ~~Ig----~~~~Ig~~------~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~~ 197 (271)
...| ...+...+ -.-..+++||++++|++++.+.++++|+++++++ ..+.+.+++++..+
T Consensus 103 ~~hg~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~~~ig~~~~i~~g~~Ig~~~~Ig-a~s~v~~~i~~~~~ 172 (192)
T PRK09677 103 HNHGSFKHSDDFSSPNLPPDMRTLESSAVVIGQRVWIGENVTILPGVSIGNGCIVG-ANSVVTKSIPENTV 172 (192)
T ss_pred CCCccccccccccccccChhhcccccCCeEEcCCcEECCCCEEcCCCEECCCCEEC-CCCEECcccCCCcE
Confidence 2211 11111111 1123457777778887777777777788887774 33777777766554
No 121
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.27 E-value=6.4e-11 Score=84.62 Aligned_cols=78 Identities=24% Similarity=0.368 Sum_probs=48.1
Q ss_pred ECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEeceeeCCCcEEccCcEEc
Q 024153 73 VGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLL 152 (271)
Q Consensus 73 IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~ 152 (271)
||+++.|++++.|. + +.||++|.|++++.|. ++.|++++.|++++.+.++.|++++.|++++.+.
T Consensus 2 ig~~~~I~~~~~i~-~---~~Ig~~~~I~~~~~i~-----------~s~i~~~~~ig~~~~l~~svi~~~~~i~~~~~v~ 66 (81)
T cd04652 2 VGENTQVGEKTSIK-R---SVIGANCKIGKRVKIT-----------NCVIMDNVTIEDGCTLENCIIGNGAVIGEKCKLK 66 (81)
T ss_pred ccCCCEECCCCEEe-C---cEECCCCEECCCCEEe-----------CcEEeCCCEECCCCEEeccEEeCCCEECCCCEEc
Confidence 45555555555554 2 4566666666666665 4566677777777777667777777777776663
Q ss_pred cCcEECCCcEEccC
Q 024153 153 DGVYVEKHAMVAAG 166 (271)
Q Consensus 153 ~~v~Ig~~~~Ig~~ 166 (271)
++.||+++.|+++
T Consensus 67 -~~ii~~~~~i~~~ 79 (81)
T cd04652 67 -DCLVGSGYRVEAG 79 (81)
T ss_pred -cCEECCCcEeCCC
Confidence 3555555555544
No 122
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=99.26 E-value=7.3e-11 Score=102.88 Aligned_cols=109 Identities=16% Similarity=0.187 Sum_probs=79.9
Q ss_pred hhcCCCceECCCCEECCCcEEecCeEECCCCEEccCcE-EecC------CCceEECCCCEECCCCEEecCCcCCCCCccc
Q 024153 47 NIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCV-LRGD------VNSISIGSGTNIQDNSLVHVAKSNLAGKVLP 119 (271)
Q Consensus 47 ~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~-I~~~------~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~ 119 (271)
..+..+++|++++.|.++++|+.++.|..+++|+.++. +... ...+.||++|.|+.+|.|...-.. +....
T Consensus 173 yVvp~gVrI~~sa~Vr~gA~LGeGT~IM~~a~Vn~nAgtiG~~~IEgrInsGavIGhds~IG~gasIg~tLsG--g~~~~ 250 (341)
T TIGR03536 173 YVVPKGVRIADTARVRLGAYVGEGTTVMHEGFINFNAGTEGPSMVEGRISAGVMVGKGSDLGGGCSTMGTLSG--GGNIV 250 (341)
T ss_pred eEccCCcEEcCCCeEcCCcEECCCCEEecCCEECcCcEecCCceEecccccCCEECCCCEECCCCEEeEEEeC--CCcee
Confidence 35567778888888888888887777777777777776 2211 134778888888888888542111 01113
Q ss_pred eEEcCCcEECcCcEEeceeeCCCcEEccCcEEccCcEEC
Q 024153 120 TIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVE 158 (271)
Q Consensus 120 ~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~~v~Ig 158 (271)
+.||++|+||.++.+ ++.||++|+||++++|..+++|-
T Consensus 251 V~IGe~~lIGagA~I-GI~IGd~~iIGAGavVtagTkI~ 288 (341)
T TIGR03536 251 ISVGEGCLLGANAGI-GIPLGDRCTVEAGLYITAGTKVA 288 (341)
T ss_pred EEECCCcEECCCCEE-eeEECCCCEECCCCEEeCCcEEE
Confidence 889999999999998 99999999999999998887664
No 123
>PRK10191 putative acyl transferase; Provisional
Probab=99.25 E-value=5.6e-11 Score=94.25 Aligned_cols=36 Identities=31% Similarity=0.585 Sum_probs=31.9
Q ss_pred ceEEcCCcEECcCcEEec-eeeCCCcEEccCcEEccC
Q 024153 119 PTIIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDG 154 (271)
Q Consensus 119 ~~~Ig~~~~i~~~~~i~~-~~Ig~~~~Ig~~~~I~~~ 154 (271)
.+.||++|+|++++.+.+ +.||++++|+++++|.++
T Consensus 92 ~~~IGd~~~Ig~~~~I~~~v~IG~~~~Igags~V~~d 128 (146)
T PRK10191 92 CPHIGNGVELGANVIILGDITIGNNVTVGAGSVVLDS 128 (146)
T ss_pred CCEECCCcEEcCCCEEeCCCEECCCCEECCCCEECCc
Confidence 468999999999998865 999999999999999875
No 124
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=99.25 E-value=4e-11 Score=97.12 Aligned_cols=69 Identities=22% Similarity=0.291 Sum_probs=52.1
Q ss_pred eEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEec-eeeCCCcEEccCcEEccCcEECCCcEEc
Q 024153 92 ISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDGVYVEKHAMVA 164 (271)
Q Consensus 92 ~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~-~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig 164 (271)
+.||++|.|+++|+|...... ...+.++||++|.|++++.+.+ ++||++|+||++++|.++ |.+++++.
T Consensus 88 ~~IG~~~~I~~~v~ig~~~~~--~~~~~~~Ig~~v~Ig~~a~I~~~v~IG~~~~Iga~s~V~~d--vp~~~~~~ 157 (162)
T TIGR01172 88 AVIGDDVTIYHGVTLGGTGKE--KGKRHPTVGEGVMIGAGAKVLGNIEVGENAKIGANSVVLKD--VPPGATVV 157 (162)
T ss_pred CEECCCCEEcCCCEECCCccc--cCCcCCEECCCcEEcCCCEEECCcEECCCCEECCCCEECCC--CCCCCEEE
Confidence 467777777777777643211 1124579999999999998866 999999999999999986 56666553
No 125
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.25 E-value=8.2e-11 Score=83.48 Aligned_cols=77 Identities=22% Similarity=0.418 Sum_probs=50.3
Q ss_pred ECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEeceeeCCCcEEccCcEEc
Q 024153 73 VGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLL 152 (271)
Q Consensus 73 IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~ 152 (271)
||+++.|++++.|.. +.||++|.|++++.|. ++.|++++.|++++.+.+++|++++.|+.++.+.
T Consensus 2 ig~~~~I~~~~~i~~----s~ig~~~~Ig~~~~i~-----------~svi~~~~~i~~~~~i~~svv~~~~~i~~~~~i~ 66 (79)
T cd03356 2 IGESTVIGENAIIKN----SVIGDNVRIGDGVTIT-----------NSILMDNVTIGANSVIVDSIIGDNAVIGENVRVV 66 (79)
T ss_pred ccCCcEECCCCEEeC----CEECCCCEECCCCEEe-----------CCEEeCCCEECCCCEEECCEECCCCEECCCCEEc
Confidence 445555555555542 3566677777777765 4667777777777777777777777777777776
Q ss_pred cCcEECCCcEEc
Q 024153 153 DGVYVEKHAMVA 164 (271)
Q Consensus 153 ~~v~Ig~~~~Ig 164 (271)
.++.+++++.|+
T Consensus 67 ~~~~ig~~~~i~ 78 (79)
T cd03356 67 NLCIIGDDVVVE 78 (79)
T ss_pred CCeEECCCeEEC
Confidence 666666666554
No 126
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.23 E-value=1.3e-10 Score=82.96 Aligned_cols=79 Identities=22% Similarity=0.312 Sum_probs=69.6
Q ss_pred ECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEE
Q 024153 55 VNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVL 134 (271)
Q Consensus 55 i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i 134 (271)
|++++.|++++.|. ++.||++|.|++++.|.. ..|+++|.|++++.+. ++.|++++.|++++.+
T Consensus 2 ig~~~~I~~~~~i~-~~~Ig~~~~I~~~~~i~~----s~i~~~~~ig~~~~l~-----------~svi~~~~~i~~~~~v 65 (81)
T cd04652 2 VGENTQVGEKTSIK-RSVIGANCKIGKRVKITN----CVIMDNVTIEDGCTLE-----------NCIIGNGAVIGEKCKL 65 (81)
T ss_pred ccCCCEECCCCEEe-CcEECCCCEECCCCEEeC----cEEeCCCEECCCCEEe-----------ccEEeCCCEECCCCEE
Confidence 67888888888886 688999999999999874 5899999999999997 6899999999999999
Q ss_pred eceeeCCCcEEccCc
Q 024153 135 HGCTVEDEAFVGMGA 149 (271)
Q Consensus 135 ~~~~Ig~~~~Ig~~~ 149 (271)
.++.||+++.|++++
T Consensus 66 ~~~ii~~~~~i~~~~ 80 (81)
T cd04652 66 KDCLVGSGYRVEAGT 80 (81)
T ss_pred ccCEECCCcEeCCCC
Confidence 989999888888764
No 127
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=99.20 E-value=1.4e-10 Score=81.52 Aligned_cols=77 Identities=27% Similarity=0.456 Sum_probs=57.8
Q ss_pred EECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEeceeeCCCcEEccCcEE
Q 024153 72 QVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATL 151 (271)
Q Consensus 72 ~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I 151 (271)
+||+++.|+++++|.+. +.||++|.|++++.|..... .. ....+.||++|+++.++.+
T Consensus 2 ~ig~~~~i~~~~~i~~~---~~Ig~~~~I~~~~~i~~~~~-----------~~--------~~~~~~ig~~~~v~~~~~i 59 (78)
T cd00208 2 FIGEGVKIHPKAVIRGP---VVIGDNVNIGPGAVIGAATG-----------PN--------EKNPTIIGDNVEIGANAVI 59 (78)
T ss_pred EECCCeEECCCCEEeCc---EEECCCCEECCCCEEEeccC-----------CC--------ccCCcEECCCcEECCCCEE
Confidence 56777777777777654 78888888888888875321 00 2244788889999999999
Q ss_pred ccCcEECCCcEEccCcEec
Q 024153 152 LDGVYVEKHAMVAAGALVR 170 (271)
Q Consensus 152 ~~~v~Ig~~~~Ig~~svV~ 170 (271)
.++++||+++.|++++.|.
T Consensus 60 ~~~~~ig~~~~i~~~s~v~ 78 (78)
T cd00208 60 HGGVKIGDNAVIGAGAVVT 78 (78)
T ss_pred eCCCEECCCCEECcCcEeC
Confidence 8889999999998888763
No 128
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=99.19 E-value=1.6e-10 Score=100.23 Aligned_cols=64 Identities=23% Similarity=0.384 Sum_probs=49.6
Q ss_pred eEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEeceeeCCCcEEccCcEEccCcEEC
Q 024153 92 ISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVE 158 (271)
Q Consensus 92 ~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~~v~Ig 158 (271)
+.||++|.|++++.|.+.-.. +....+.||++|+||.++.| ++.||++|.||++++|..++.|-
T Consensus 200 vvIGd~~~IgpGvsI~G~LsG--g~~~pV~IGe~~~IGagA~I-GI~IGd~~VVGAGaVVtkgT~v~ 263 (319)
T TIGR03535 200 VVVGDGSDIGGGASIMGTLSG--GGKEVISIGERCLLGANSGL-GISLGDDCVVEAGLYVTAGTKVT 263 (319)
T ss_pred CEECCCCEECCCceecceecC--CCcccEEECCCcEECCCCEE-CeEECCCCEECCCCEEeCCeEEE
Confidence 677777777777775431110 01224999999999999999 99999999999999999987663
No 129
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.18 E-value=1.2e-10 Score=95.05 Aligned_cols=115 Identities=17% Similarity=0.172 Sum_probs=80.4
Q ss_pred ECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEece-eeCCCcEEccCcEE
Q 024153 73 VGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGC-TVEDEAFVGMGATL 151 (271)
Q Consensus 73 IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~-~Ig~~~~Ig~~~~I 151 (271)
+++++.|.+...+.. ...+.||+++.|+.+++|... ..++||+++.|++++.|... .--+......+..+
T Consensus 45 ~~~~~~i~~~~~~~~-~~~i~IG~~v~I~~~~~i~~~--------~~i~IG~~v~Ig~~~~I~~~~h~~~~~~~~~~~~~ 115 (169)
T cd03357 45 VGENVYIEPPFHCDY-GYNIHIGDNFYANFNCTILDV--------APVTIGDNVLIGPNVQIYTAGHPLDPEERNRGLEY 115 (169)
T ss_pred cCCCCEEcCCEEEEe-CCcCEECCCceEcCCEEEecc--------CcEEECCCCEECCCCEEEeCCCCCChhHcccccee
Confidence 566677766665531 124789999999999888632 36889999999988888431 00011111134455
Q ss_pred ccCcEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHHH
Q 024153 152 LDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEM 197 (271)
Q Consensus 152 ~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~~ 197 (271)
..+++||++|+|++++.|.++++|++++++ |..|.+.+++++..+
T Consensus 116 ~~~v~IG~~~~Ig~~a~I~~gv~Ig~~~~V-gagavV~~~vp~~~v 160 (169)
T cd03357 116 AKPITIGDNVWIGGGVIILPGVTIGDNSVI-GAGSVVTKDIPANVV 160 (169)
T ss_pred cCCcEeCCCEEECCCCEEeCCCEECCCCEE-CCCCEEccccCCCcE
Confidence 677888899999999998888889999887 455888888877654
No 130
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.18 E-value=2.2e-10 Score=81.10 Aligned_cols=76 Identities=25% Similarity=0.452 Sum_probs=62.4
Q ss_pred ECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEeceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCc
Q 024153 94 IGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNT 173 (271)
Q Consensus 94 IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~ 173 (271)
||++|.|++++.|. ++.|++++.|++++.|.++.|++++.|+.++.|. +++|++++.|+.++.+..++
T Consensus 2 ig~~~~I~~~~~i~-----------~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~ 69 (79)
T cd05787 2 IGRGTSIGEGTTIK-----------NSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIH-HSIVADGAVIGKGCTIPPGS 69 (79)
T ss_pred ccCCCEECCCCEEe-----------ccEECCCCEECCCCEEeCcEEeCCCEECCCCEEe-CcEEcCCCEECCCCEECCCC
Confidence 78899999999986 5789999999999999999999999999998886 57777777777777766666
Q ss_pred eeCCCcEE
Q 024153 174 KIPCGEVW 181 (271)
Q Consensus 174 ~I~~~~vv 181 (271)
.+++++.+
T Consensus 70 ~v~~~~~i 77 (79)
T cd05787 70 LISFGVVI 77 (79)
T ss_pred EEeCCcEe
Confidence 66665544
No 131
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.18 E-value=2.8e-10 Score=81.03 Aligned_cols=46 Identities=17% Similarity=0.115 Sum_probs=27.2
Q ss_pred ceEEcCCcEECcCcEEeceeeCCCcEEccCcEEccCcEECCCcEEc
Q 024153 119 PTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVA 164 (271)
Q Consensus 119 ~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig 164 (271)
++.+++++.|++++.+.++.+++++.+++++.+..+..||+++.|+
T Consensus 34 ~sii~~~~~i~~~~~i~~sii~~~~~v~~~~~~~~~~~ig~~~~i~ 79 (80)
T cd05824 34 RCVILSNSTVRDHSWVKSSIVGWNSTVGRWTRLENVTVLGDDVTIK 79 (80)
T ss_pred eeEEcCCCEECCCCEEeCCEEeCCCEECCCcEEecCEEECCceEEC
Confidence 3555555666666666666666666666666665555555555553
No 132
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=99.18 E-value=3.6e-10 Score=84.92 Aligned_cols=98 Identities=24% Similarity=0.399 Sum_probs=73.7
Q ss_pred ceECCCCEECCCcEEec--CeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECc
Q 024153 53 PVVNKDVFLAPSASIIG--DVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGH 130 (271)
Q Consensus 53 ~~i~~~~~I~~~~~i~~--~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~ 130 (271)
+.|+++++|++++.|.+ ++.||++|.|++++.|... ....++.++.+...... .++.||+++.|+.
T Consensus 2 v~Ig~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~i~~~-~~~~~~~~~~~~~~~~~-----------~~~~Ig~~~~ig~ 69 (109)
T cd04647 2 ISIGDNVYIGPGCVISAGGGITIGDNVLIGPNVTIYDH-NHDIDDPERPIEQGVTS-----------APIVIGDDVWIGA 69 (109)
T ss_pred eEECCCcEECCCCEEecCCceEECCCCEECCCCEEECC-CCCCCcccccccccccc-----------CCeEECCCCEECC
Confidence 57899999999999988 8999999999999999854 22222223322222222 3789999999999
Q ss_pred CcEE-eceeeCCCcEEccCcEEccCcEECCCcEEc
Q 024153 131 SAVL-HGCTVEDEAFVGMGATLLDGVYVEKHAMVA 164 (271)
Q Consensus 131 ~~~i-~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig 164 (271)
++.+ .++.||++|+|++++.|.. .+.++++++
T Consensus 70 ~~~i~~~~~ig~~~~i~~~~~v~~--~i~~~~i~~ 102 (109)
T cd04647 70 NVVILPGVTIGDGAVVGAGSVVTK--DVPPNSIVA 102 (109)
T ss_pred CCEEcCCCEECCCCEECCCCEEee--ECCCCCEEE
Confidence 9988 5699999999999998883 566766654
No 133
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=99.18 E-value=2.2e-10 Score=99.48 Aligned_cols=99 Identities=22% Similarity=0.251 Sum_probs=67.3
Q ss_pred ECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEE
Q 024153 55 VNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVL 134 (271)
Q Consensus 55 i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i 134 (271)
+..++.|+|++.|+.++.|+.+ .+.+|..+ +.||++|.|..+++|.+..... .....+||++|.||.++.|
T Consensus 138 ~~~gidI~~~a~IG~g~~I~h~----~givIG~~---a~IGdnv~I~~~VtiGg~~~~~--~~~~p~IGd~V~IGaga~I 208 (273)
T PRK11132 138 VAFQVDIHPAAKIGRGIMLDHA----TGIVIGET---AVIENDVSILQSVTLGGTGKTS--GDRHPKIREGVMIGAGAKI 208 (273)
T ss_pred eeeeeEecCcceECCCeEEcCC----CCeEECCC---CEECCCCEEcCCcEEecCcccC--CCcCCEECCCcEEcCCCEE
Confidence 3444455555444444444332 23455433 7899999999999997532211 1124689999999999988
Q ss_pred ec-eeeCCCcEEccCcEEccCcEECCCcEEc
Q 024153 135 HG-CTVEDEAFVGMGATLLDGVYVEKHAMVA 164 (271)
Q Consensus 135 ~~-~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig 164 (271)
.+ ++||++|.||++++|..+ |.+++++.
T Consensus 209 lggv~IG~~a~IGAgSvV~~d--Vp~~~~v~ 237 (273)
T PRK11132 209 LGNIEVGRGAKIGAGSVVLQP--VPPHTTAA 237 (273)
T ss_pred cCCCEECCCCEECCCCEECcc--cCCCcEEE
Confidence 55 999999999999999875 66666654
No 134
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=99.18 E-value=2.6e-10 Score=85.89 Aligned_cols=95 Identities=21% Similarity=0.221 Sum_probs=70.6
Q ss_pred CceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEeceeeCCCc-EEccCcEEccCcEECCCcEEccCcE
Q 024153 90 NSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEA-FVGMGATLLDGVYVEKHAMVAAGAL 168 (271)
Q Consensus 90 ~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~Ig~~~-~Ig~~~~I~~~v~Ig~~~~Ig~~sv 168 (271)
.++.||++|.|++++.|... ..++||++|.|++++.|... ++. .......+...+.||++|+|++++.
T Consensus 2 ~~i~iG~~~~I~~~~~i~~~--------~~i~IG~~~~I~~~~~I~~~---~h~~~~~~~~~~~~~v~Ig~~~~ig~~~~ 70 (107)
T cd05825 2 WNLTIGDNSWIGEGVWIYNL--------APVTIGSDACISQGAYLCTG---SHDYRSPAFPLITAPIVIGDGAWVAAEAF 70 (107)
T ss_pred ceEEECCCCEECCCCEEeeC--------CceEECCCCEECCCeEeecC---CCCCCcCccceecCCEEECCCCEECCCCE
Confidence 46899999999999999842 36899999999999988431 111 1122345567788888888888888
Q ss_pred ecCCceeCCCcEEeccCceEccCCCHHH
Q 024153 169 VRQNTKIPCGEVWGGNPARFLRKLTEEE 196 (271)
Q Consensus 169 V~~~~~I~~~~vv~G~pa~~~~~~~~~~ 196 (271)
+.++++|+++++++ ..+.+.+++++..
T Consensus 71 i~~g~~Ig~~~~i~-~gs~v~~~~~~~~ 97 (107)
T cd05825 71 VGPGVTIGEGAVVG-ARSVVVRDLPAWT 97 (107)
T ss_pred ECCCCEECCCCEEC-CCCEEeCcCCCCC
Confidence 88888888888875 4477777776544
No 135
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=3.5e-10 Score=102.92 Aligned_cols=100 Identities=23% Similarity=0.399 Sum_probs=85.5
Q ss_pred ECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEeceeeC
Q 024153 61 LAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVE 140 (271)
Q Consensus 61 I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~Ig 140 (271)
+.. +.+.+++.||++|.|++++.|.+. +.||++|.|++++.|. ++.|+++|.|++++.+.+++||
T Consensus 253 ~~~-~~i~gp~~ig~~~~i~~~~~i~~~---~~ig~~~~I~~~~~i~-----------~Sii~~~~~i~~~~~i~~sIi~ 317 (358)
T COG1208 253 IRS-AYIIGPVVIGPGAKIGPGALIGPY---TVIGEGVTIGNGVEIK-----------NSIIMDNVVIGHGSYIGDSIIG 317 (358)
T ss_pred ccc-ceEeCCEEECCCCEECCCCEECCC---cEECCCCEECCCcEEE-----------eeEEEcCCEECCCCEEeeeEEc
Confidence 444 788899999999999999999876 8999999999999998 6999999999999999999999
Q ss_pred CCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEEe
Q 024153 141 DEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWG 182 (271)
Q Consensus 141 ~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~ 182 (271)
++|.||++. . ||+ +.++.++.+.+++++++++++.
T Consensus 318 ~~~~ig~~~-~-----i~d-~~~g~~~~i~~g~~~~~~~~~~ 352 (358)
T COG1208 318 ENCKIGASL-I-----IGD-VVIGINSEILPGVVVGPGSVVE 352 (358)
T ss_pred CCcEECCce-e-----ecc-eEecCceEEcCceEeCCCcccc
Confidence 999999922 2 777 7777777777777777776653
No 136
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=99.15 E-value=4.2e-10 Score=92.82 Aligned_cols=97 Identities=16% Similarity=0.166 Sum_probs=60.9
Q ss_pred ceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEec-eeeCCCcEEccCcEEccCcEECCCcEEccCcEe
Q 024153 91 SISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDGVYVEKHAMVAAGALV 169 (271)
Q Consensus 91 ~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~-~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV 169 (271)
++.||+++.|+.+|+|... ..++||++|.|++++.+.. ....+......+..+...++||++|+||++++|
T Consensus 73 ~i~iG~~~~in~~~~i~d~--------~~I~IGd~v~I~~~v~i~t~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~a~I 144 (183)
T PRK10092 73 NIFLGNNFYANFDCVMLDV--------CPIRIGDNCMLAPGVHIYTATHPLDPVARNSGAELGKPVTIGNNVWIGGRAVI 144 (183)
T ss_pred CcEEcCCcEECCceEEecC--------ceEEECCCCEECCCCEEEcCCCCCChHHccccceecCCeEECCCcEECCCCEE
Confidence 3667777777777776532 2457888888888777743 222233333334455566777777777777777
Q ss_pred cCCceeCCCcEEeccCceEccCCCHHH
Q 024153 170 RQNTKIPCGEVWGGNPARFLRKLTEEE 196 (271)
Q Consensus 170 ~~~~~I~~~~vv~G~pa~~~~~~~~~~ 196 (271)
.++++|+++++++ ..+.+.+++++..
T Consensus 145 ~~gv~IG~~~vIg-agsvV~~di~~~~ 170 (183)
T PRK10092 145 NPGVTIGDNVVVA-SGAVVTKDVPDNV 170 (183)
T ss_pred CCCCEECCCCEEC-CCCEEccccCCCc
Confidence 7777777777764 3366667766544
No 137
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=1.2e-10 Score=108.81 Aligned_cols=93 Identities=14% Similarity=0.317 Sum_probs=66.1
Q ss_pred CeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEeceeeCCCcEEccCc
Q 024153 70 DVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGA 149 (271)
Q Consensus 70 ~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~ 149 (271)
+++-++.+.+.+.+.+..+ +.||.++.||.++.|. ++.||.+|.||.|+.|.++.|+++|+||.||
T Consensus 315 ~IYk~~dv~~~~~~~v~~~---~~ig~gT~Ig~g~~I~-----------NSVIG~~c~IgsN~~I~~S~iw~~v~Igdnc 380 (673)
T KOG1461|consen 315 NIYKSPDVVLSHSVIVGAN---VVIGAGTKIGSGSKIS-----------NSVIGANCRIGSNVRIKNSFIWNNVTIGDNC 380 (673)
T ss_pred ccccCccceehhhccccce---EEecccccccCCCeee-----------cceecCCCEecCceEEeeeeeecCcEECCCc
Confidence 5556666666666666644 7888899999999998 7999999999999999999999999999887
Q ss_pred EEccCcEECCCcEEccCcEecCCceeCC
Q 024153 150 TLLDGVYVEKHAMVAAGALVRQNTKIPC 177 (271)
Q Consensus 150 ~I~~~v~Ig~~~~Ig~~svV~~~~~I~~ 177 (271)
.|.. +.|++++.|+.++.+.+++.++.
T Consensus 381 ~I~~-aii~d~v~i~~~~~l~~g~vl~~ 407 (673)
T KOG1461|consen 381 RIDH-AIICDDVKIGEGAILKPGSVLGF 407 (673)
T ss_pred eEee-eEeecCcEeCCCcccCCCcEEee
Confidence 7532 44444444444433333333333
No 138
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.14 E-value=6.5e-10 Score=79.15 Aligned_cols=77 Identities=26% Similarity=0.343 Sum_probs=62.9
Q ss_pred ECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEE
Q 024153 55 VNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVL 134 (271)
Q Consensus 55 i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i 134 (271)
+++++.|++++.|++++.||++|.|++++.|.. ..|++++.|++++.|. ++.+++++.+++++.+
T Consensus 2 i~~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~----sii~~~~~i~~~~~i~-----------~sii~~~~~v~~~~~~ 66 (80)
T cd05824 2 IDPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQR----CVILSNSTVRDHSWVK-----------SSIVGWNSTVGRWTRL 66 (80)
T ss_pred cCCCCEECCCCEECCCCEECCCCEECCCcEEee----eEEcCCCEECCCCEEe-----------CCEEeCCCEECCCcEE
Confidence 456677777777777777888888888888873 5889999999999997 6899999999999888
Q ss_pred ec-eeeCCCcEEc
Q 024153 135 HG-CTVEDEAFVG 146 (271)
Q Consensus 135 ~~-~~Ig~~~~Ig 146 (271)
.+ +.||+++.|+
T Consensus 67 ~~~~~ig~~~~i~ 79 (80)
T cd05824 67 ENVTVLGDDVTIK 79 (80)
T ss_pred ecCEEECCceEEC
Confidence 76 7777777765
No 139
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.14 E-value=7.4e-10 Score=78.50 Aligned_cols=76 Identities=22% Similarity=0.397 Sum_probs=62.1
Q ss_pred ECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEE
Q 024153 55 VNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVL 134 (271)
Q Consensus 55 i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i 134 (271)
|++++.|++++.|.+ +.||++|.|++++.|.. ..|+++|.|++++.+. ++.|++++.|++++.+
T Consensus 2 ig~~~~I~~~~~i~~-s~ig~~~~Ig~~~~i~~----svi~~~~~i~~~~~i~-----------~svv~~~~~i~~~~~i 65 (79)
T cd03356 2 IGESTVIGENAIIKN-SVIGDNVRIGDGVTITN----SILMDNVTIGANSVIV-----------DSIIGDNAVIGENVRV 65 (79)
T ss_pred ccCCcEECCCCEEeC-CEECCCCEECCCCEEeC----CEEeCCCEECCCCEEE-----------CCEECCCCEECCCCEE
Confidence 677788888888876 88899999999999874 5899999999999997 5789999988888877
Q ss_pred ec-eeeCCCcEEc
Q 024153 135 HG-CTVEDEAFVG 146 (271)
Q Consensus 135 ~~-~~Ig~~~~Ig 146 (271)
.+ +.|++++.|+
T Consensus 66 ~~~~~ig~~~~i~ 78 (79)
T cd03356 66 VNLCIIGDDVVVE 78 (79)
T ss_pred cCCeEECCCeEEC
Confidence 66 6677666664
No 140
>PLN02739 serine acetyltransferase
Probab=99.13 E-value=3e-10 Score=100.81 Aligned_cols=69 Identities=25% Similarity=0.334 Sum_probs=50.7
Q ss_pred eEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEec-eeeCCCcEEccCcEEccCcEECCCcEEc
Q 024153 92 ISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDGVYVEKHAMVA 164 (271)
Q Consensus 92 ~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~-~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig 164 (271)
+.||++|.|..+|+|.+.... ...+..+||++|+||+++.|-+ ++||++|.||+|++|... |.+++++.
T Consensus 232 avIGdnv~I~~gVTIGg~g~~--~g~r~p~IGd~V~IGagA~IlG~V~IGd~aiIGAGSVV~kD--VP~~stvv 301 (355)
T PLN02739 232 AVIGDRVSILHGVTLGGTGKE--TGDRHPKIGDGALLGACVTILGNISIGAGAMVAAGSLVLKD--VPSHSMVA 301 (355)
T ss_pred CEECCCCEEcCCceeCCcCCc--CCCCCcEECCCCEEcCCCEEeCCeEECCCCEECCCCEECCC--CCCCcEEE
Confidence 456667777777777543211 0124679999999999998855 999999999999999875 66666654
No 141
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=99.10 E-value=1.8e-09 Score=80.89 Aligned_cols=77 Identities=18% Similarity=0.339 Sum_probs=38.9
Q ss_pred EECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEeceee
Q 024153 60 FLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTV 139 (271)
Q Consensus 60 ~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~I 139 (271)
+|++++.|. ++.||++|.|+ ++.|.. ..|+++|.|++++.|. ++.|++++.|+.++.+.++.|
T Consensus 3 ~i~~~~~i~-~s~Ig~~~~I~-~~~I~~----svi~~~~~Ig~~~~I~-----------~siI~~~~~Ig~~~~i~~sii 65 (104)
T cd04651 3 YIGRRGEVK-NSLVSEGCIIS-GGTVEN----SVLFRGVRVGSGSVVE-----------DSVIMPNVGIGRNAVIRRAII 65 (104)
T ss_pred eecCCCEEE-eEEECCCCEEc-CeEEEe----CEEeCCCEECCCCEEE-----------EeEEcCCCEECCCCEEEeEEE
Confidence 344444442 34455555555 455542 3555555555555554 355555555555555555555
Q ss_pred CCCcEEccCcEEcc
Q 024153 140 EDEAFVGMGATLLD 153 (271)
Q Consensus 140 g~~~~Ig~~~~I~~ 153 (271)
|+++.|++++.+.+
T Consensus 66 g~~~~Ig~~~~v~~ 79 (104)
T cd04651 66 DKNVVIPDGVVIGG 79 (104)
T ss_pred CCCCEECCCCEECC
Confidence 55554444444433
No 142
>PLN02694 serine O-acetyltransferase
Probab=99.10 E-value=5.9e-10 Score=97.06 Aligned_cols=69 Identities=22% Similarity=0.278 Sum_probs=48.3
Q ss_pred eEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEE-eceeeCCCcEEccCcEEccCcEECCCcEEc
Q 024153 92 ISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVL-HGCTVEDEAFVGMGATLLDGVYVEKHAMVA 164 (271)
Q Consensus 92 ~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i-~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig 164 (271)
+.||++|.|..++++.+... ......++||++|.||.++.| .+++||++|.||++++|..+ |.+++++.
T Consensus 187 a~IGdnv~I~~~VtLGg~g~--~~~~r~piIGd~V~IGagA~Ilggi~IGd~a~IGAgSVV~kd--VP~~~~v~ 256 (294)
T PLN02694 187 AVIGNNVSILHHVTLGGTGK--ACGDRHPKIGDGVLIGAGATILGNVKIGEGAKIGAGSVVLID--VPPRTTAV 256 (294)
T ss_pred cEECCCCEEeecceeCCccc--ccCCCccEECCCeEECCeeEECCCCEECCCCEECCCCEECCc--CCCCcEEE
Confidence 34555566666666543211 011246899999999999998 56999999999999999874 55555553
No 143
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=99.10 E-value=1.7e-10 Score=88.71 Aligned_cols=103 Identities=21% Similarity=0.333 Sum_probs=73.2
Q ss_pred CCceECCCCEECCCcEEec---CeEECCCCEEccCcEEecCC---------CceEECCCCEECCCCEEecCCcCCCCCcc
Q 024153 51 KAPVVNKDVFLAPSASIIG---DVQVGRGSSIWYGCVLRGDV---------NSISIGSGTNIQDNSLVHVAKSNLAGKVL 118 (271)
Q Consensus 51 ~~~~i~~~~~I~~~~~i~~---~v~IG~~~~I~~~~~I~~~~---------~~~~IG~~~~I~~~~~I~~~~~~~~~~~~ 118 (271)
.+..+...+.+..+++|.| ++++|+.|.+..+++|+... .++.|||+++|++.|++.+
T Consensus 32 QNI~lnGKtIv~~g~iIRGDLAnVr~GryCV~ksrsvIRPp~K~FSKg~affp~hiGdhVFieE~cVVnA---------- 101 (184)
T KOG3121|consen 32 QNILLNGKTIVEEGVIIRGDLANVRIGRYCVLKSRSVIRPPMKIFSKGPAFFPVHIGDHVFIEEECVVNA---------- 101 (184)
T ss_pred ceEEEcCcEEEeeCcEEecccccceEcceEEeccccccCCchHHhcCCceeeeeeecceEEEecceEeeh----------
Confidence 3455667788999999987 59999999999999998532 4689999999999999985
Q ss_pred ceEEcCCcEECcCcEEec-eeeCCCcEEccCcEEccCcEECCCcEEc
Q 024153 119 PTIIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDGVYVEKHAMVA 164 (271)
Q Consensus 119 ~~~Ig~~~~i~~~~~i~~-~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig 164 (271)
.+||.++.+|.+++|.. |++.|.|.|-.++++-+.+.+.+.+.++
T Consensus 102 -AqIgsyVh~GknaviGrrCVlkdCc~ild~tVlPpet~vppy~~~~ 147 (184)
T KOG3121|consen 102 -AQIGSYVHLGKNAVIGRRCVLKDCCRILDDTVLPPETLVPPYSTIG 147 (184)
T ss_pred -hhheeeeEeccceeEcCceEhhhheeccCCcccCcccccCCceEEc
Confidence 67888887776655533 4444444444444444444444444443
No 144
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=99.08 E-value=1.6e-09 Score=76.05 Aligned_cols=54 Identities=28% Similarity=0.457 Sum_probs=39.5
Q ss_pred eECCCCEECCCcEEecCeEECCCCEEccCcEEecCCC-----ceEECCCCEECCCCEEe
Q 024153 54 VVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVN-----SISIGSGTNIQDNSLVH 107 (271)
Q Consensus 54 ~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~-----~~~IG~~~~I~~~~~I~ 107 (271)
.|++++.|+++++|.+++.||+++.|++++.|.+... .+.||++|.|+.++++.
T Consensus 2 ~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~ig~~~~v~~~~~i~ 60 (78)
T cd00208 2 FIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIH 60 (78)
T ss_pred EECCCeEECCCCEEeCcEEECCCCEECCCCEEEeccCCCccCCcEECCCcEECCCCEEe
Confidence 5889999999999998999999999999999886421 24444444444444443
No 145
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=99.07 E-value=1.2e-09 Score=99.32 Aligned_cols=100 Identities=24% Similarity=0.386 Sum_probs=84.6
Q ss_pred cCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEE
Q 024153 49 FDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTV 128 (271)
Q Consensus 49 ~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i 128 (271)
+...+.|++++.|++++.|++++.||++|.|+.++.|.. ..|.++|.|++++.|. +++||++|.|
T Consensus 258 i~gp~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~----Sii~~~~~i~~~~~i~-----------~sIi~~~~~i 322 (358)
T COG1208 258 IIGPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKN----SIIMDNVVIGHGSYIG-----------DSIIGENCKI 322 (358)
T ss_pred EeCCEEECCCCEECCCCEECCCcEECCCCEECCCcEEEe----eEEEcCCEECCCCEEe-----------eeEEcCCcEE
Confidence 445567888888888888888888888888888888874 5899999999999998 6999999999
Q ss_pred CcCcEEeceeeCCCcEEccCcEEccCcEECCCcEEccCcEe
Q 024153 129 GHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALV 169 (271)
Q Consensus 129 ~~~~~i~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV 169 (271)
++ .. . ||| +.+|.++.+.++++++.++++.++.++
T Consensus 323 g~-~~-~---i~d-~~~g~~~~i~~g~~~~~~~~~~~~~~~ 357 (358)
T COG1208 323 GA-SL-I---IGD-VVIGINSEILPGVVVGPGSVVESGEIE 357 (358)
T ss_pred CC-ce-e---ecc-eEecCceEEcCceEeCCCccccCcccc
Confidence 99 22 2 999 999999999999999998888877654
No 146
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=8.3e-10 Score=98.00 Aligned_cols=87 Identities=25% Similarity=0.312 Sum_probs=73.3
Q ss_pred cEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEeceeeCCCcE
Q 024153 65 ASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAF 144 (271)
Q Consensus 65 ~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~Ig~~~~ 144 (271)
+.++.++.+|++|.|+.++.|.- ..||++|.||+.|.|. ++.|.+++.+|+++.|.+|+||+++.
T Consensus 329 ~l~g~d~iv~~~t~i~~~s~ik~----SviG~nC~Ig~~~~v~-----------nSilm~nV~vg~G~~IensIIg~gA~ 393 (433)
T KOG1462|consen 329 ALVGADSIVGDNTQIGENSNIKR----SVIGSNCDIGERVKVA-----------NSILMDNVVVGDGVNIENSIIGMGAQ 393 (433)
T ss_pred eccchhhccCCCceecccceeee----eeecCCccccCCcEEE-----------eeEeecCcEecCCcceecceecccce
Confidence 55666778888888888888874 5899999999999998 69999999999999999999999999
Q ss_pred EccCcEEccCcEECCCcEEccCc
Q 024153 145 VGMGATLLDGVYVEKHAMVAAGA 167 (271)
Q Consensus 145 Ig~~~~I~~~v~Ig~~~~Ig~~s 167 (271)
||.++.+.. |.||.+-+|-|..
T Consensus 394 Ig~gs~L~n-C~Ig~~yvVeak~ 415 (433)
T KOG1462|consen 394 IGSGSKLKN-CIIGPGYVVEAKG 415 (433)
T ss_pred ecCCCeeee-eEecCCcEEcccc
Confidence 999999954 6666666655443
No 147
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=99.04 E-value=2.5e-09 Score=79.60 Aligned_cols=92 Identities=22% Similarity=0.322 Sum_probs=58.1
Q ss_pred eECCCCEECCCcEEec--CeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcC
Q 024153 54 VVNKDVFLAPSASIIG--DVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHS 131 (271)
Q Consensus 54 ~i~~~~~I~~~~~i~~--~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~ 131 (271)
.|++++.|+++++|.. .+.||+++.|++++.|. +++.|+.++.+. ..+.+.||+++.|+.+
T Consensus 4 ~i~~~~~ig~~~~i~~~~~~~ig~~~~Ig~~~~i~---------~~~~i~~~~~~~--------~~~~~~Ig~~~~Ig~~ 66 (101)
T cd03354 4 DIHPGAKIGPGLFIDHGTGIVIGETAVIGDNCTIY---------QGVTLGGKGKGG--------GKRHPTIGDNVVIGAG 66 (101)
T ss_pred EeCCCCEECCCEEECCCCeEEECCCCEECCCCEEc---------CCCEECCCccCC--------cCCCCEECCCcEEcCC
Confidence 3455555555555543 34455555555444433 333444333320 1247899999999999
Q ss_pred cEEec-eeeCCCcEEccCcEEccCcEECCCcEEc
Q 024153 132 AVLHG-CTVEDEAFVGMGATLLDGVYVEKHAMVA 164 (271)
Q Consensus 132 ~~i~~-~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig 164 (271)
+.+.. ++||++|+|++++.|.+. +.+++++.
T Consensus 67 ~~i~~~~~Ig~~~~i~~~~~i~~~--~~~~~~~~ 98 (101)
T cd03354 67 AKILGNITIGDNVKIGANAVVTKD--VPANSTVV 98 (101)
T ss_pred CEEECcCEECCCCEECCCCEECcc--cCCCCEEE
Confidence 98877 999999999999999874 66666554
No 148
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=99.03 E-value=2.4e-09 Score=80.27 Aligned_cols=79 Identities=15% Similarity=0.270 Sum_probs=67.7
Q ss_pred CEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEeceeeCCCcEEccCcEEccCcE
Q 024153 77 SSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVY 156 (271)
Q Consensus 77 ~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~~v~ 156 (271)
+.|++++.|.. ..||++|.|+ ++.|. ++.|++++.|++++.|.++.|++++.|+.++.+ .++.
T Consensus 2 ~~i~~~~~i~~----s~Ig~~~~I~-~~~I~-----------~svi~~~~~Ig~~~~I~~siI~~~~~Ig~~~~i-~~si 64 (104)
T cd04651 2 PYIGRRGEVKN----SLVSEGCIIS-GGTVE-----------NSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVI-RRAI 64 (104)
T ss_pred ceecCCCEEEe----EEECCCCEEc-CeEEE-----------eCEEeCCCEECCCCEEEEeEEcCCCEECCCCEE-EeEE
Confidence 34555565542 5789999998 88887 689999999999999999999999999999999 5799
Q ss_pred ECCCcEEccCcEecCC
Q 024153 157 VEKHAMVAAGALVRQN 172 (271)
Q Consensus 157 Ig~~~~Ig~~svV~~~ 172 (271)
||+++.|++++.+.++
T Consensus 65 ig~~~~Ig~~~~v~~~ 80 (104)
T cd04651 65 IDKNVVIPDGVVIGGD 80 (104)
T ss_pred ECCCCEECCCCEECCC
Confidence 9999999999988876
No 149
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=99.03 E-value=2.7e-09 Score=99.70 Aligned_cols=100 Identities=15% Similarity=0.359 Sum_probs=70.3
Q ss_pred CcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcC---------------C---
Q 024153 64 SASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGD---------------N--- 125 (271)
Q Consensus 64 ~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~---------------~--- 125 (271)
++.+.+ +.|+++|.|+ ++.|.. ..||++|.|+++|.|.. .+.+|. +
T Consensus 310 ~~~i~~-s~I~~~~~I~-~~~I~~----svI~~~~~Ig~~~~I~~----------sii~g~~~~~~~~~~~~~~~~~~~~ 373 (436)
T PLN02241 310 DCRITD-SIISHGCFLR-ECKIEH----SVVGLRSRIGEGVEIED----------TVMMGADYYETEEEIASLLAEGKVP 373 (436)
T ss_pred CCeEEE-eEEcCCcEEc-CeEEEe----eEEcCCCEECCCCEEEE----------eEEECCCccccccccccccccCCcc
Confidence 444544 7788888888 888863 58999999999999874 233342 2
Q ss_pred cEECcCcEEeceeeCCCcEEccCcEEcc------CcEECCCcEEccC-cEecCCceeCCCc
Q 024153 126 VTVGHSAVLHGCTVEDEAFVGMGATLLD------GVYVEKHAMVAAG-ALVRQNTKIPCGE 179 (271)
Q Consensus 126 ~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~------~v~Ig~~~~Ig~~-svV~~~~~I~~~~ 179 (271)
+.|+.++.+.+++|+++|+||.++.|.. ..++|++|.|+.+ ++|++++.|++++
T Consensus 374 ~~Ig~~~~i~~~vI~~~v~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 434 (436)
T PLN02241 374 IGIGENTKIRNAIIDKNARIGKNVVIINKDGVQEADREEEGYYIRSGIVVILKNAVIPDGT 434 (436)
T ss_pred eEECCCCEEcceEecCCCEECCCcEEecccccCCccccccccEEeCCEEEEcCCcEeCCCC
Confidence 3788888888888999999998888864 3555666666666 3555555555443
No 150
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=99.03 E-value=2.2e-09 Score=97.47 Aligned_cols=106 Identities=24% Similarity=0.287 Sum_probs=73.6
Q ss_pred ECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEeceeeC
Q 024153 61 LAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVE 140 (271)
Q Consensus 61 I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~Ig 140 (271)
+.+.+.+.+++.||++|.| .++.|.+. +.||++|.|+ +++|.. +++||++|.|+ ++.|.+++|+
T Consensus 245 i~~~~~i~~~~~i~~~~~i-~~~~i~~~---~~Ig~~~~I~-~~~i~~----------~~~Ig~~~~i~-~~~i~~s~i~ 308 (353)
T TIGR01208 245 VDDESKIRGRVVVGEGAKI-VNSVIRGP---AVIGEDCIIE-NSYIGP----------YTSIGEGVVIR-DAEVEHSIVL 308 (353)
T ss_pred cCCCCEEcCCEEECCCCEE-eCCEEECC---cEECCCCEEc-CcEECC----------CCEECCCCEEe-eeEEEeeEEc
Confidence 5667788888889999999 78888765 7888888886 445542 67788888776 5777778888
Q ss_pred CCcEEccCc-EEccCcEECCCcEEccCcEecCCceeCCCcEEeccCceE
Q 024153 141 DEAFVGMGA-TLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARF 188 (271)
Q Consensus 141 ~~~~Ig~~~-~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~ 188 (271)
+++.|+.++ .+ .++.||+++.|+.+..+..+ ...+.|.++++
T Consensus 309 ~~~~i~~~~~~~-~~~ii~~~~~i~~~~~~~~~-----~~~~~g~~~~~ 351 (353)
T TIGR01208 309 DESVIEGVQARI-VDSVIGKKVRIKGNRRRPGD-----LRLTIGDYSQV 351 (353)
T ss_pred CCCEEcCCccee-ecCEEcCCCEECCCcccccc-----cceEEcCCcee
Confidence 888887774 44 45677777776666555432 23445665543
No 151
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=99.03 E-value=7.6e-09 Score=84.36 Aligned_cols=77 Identities=25% Similarity=0.365 Sum_probs=55.9
Q ss_pred eEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEE-eceeeCCCcEEccCcEEccCcEECCCcEEccCcEec
Q 024153 92 ISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVL-HGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVR 170 (271)
Q Consensus 92 ~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i-~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~ 170 (271)
..||++|.|..+++|.+.... .+. ..-+||+++.||+++.| .+++|||++.||+|++|...+ -++++|.
T Consensus 94 a~IGddv~I~~gVTLGgtg~~-~g~-RhPtIg~~V~IGagAkILG~I~IGd~akIGA~sVVlkdV--------P~~~tvv 163 (194)
T COG1045 94 AVIGDDVTIYHGVTLGGTGKE-SGK-RHPTIGNGVYIGAGAKILGNIEIGDNAKIGAGSVVLKDV--------PPNATVV 163 (194)
T ss_pred eEECCCeEEEcceEecCCCCc-CCC-CCCccCCCeEECCCCEEEcceEECCCCEECCCceEccCC--------CCCceEe
Confidence 567788888888888654332 222 23479999999999966 559999999999999999865 3344444
Q ss_pred CCceeCCCcEE
Q 024153 171 QNTKIPCGEVW 181 (271)
Q Consensus 171 ~~~~I~~~~vv 181 (271)
. ||+..+-
T Consensus 164 G---vPArii~ 171 (194)
T COG1045 164 G---VPARVIG 171 (194)
T ss_pred c---CcceEec
Confidence 4 6766553
No 152
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=99.02 E-value=3.2e-09 Score=96.49 Aligned_cols=100 Identities=14% Similarity=0.157 Sum_probs=58.8
Q ss_pred eECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcC-c
Q 024153 54 VVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHS-A 132 (271)
Q Consensus 54 ~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~-~ 132 (271)
.+.+.++|++++.| .++.|+..|.|+++|.|.+ ..|+++|.|+++|.|.. . ...+++|++++.|+.+ +
T Consensus 250 ~i~~~~~i~~~~~i-~~~~i~~~~~Ig~~~~I~~----~~i~~~~~Ig~~~~i~~-~-----~i~~s~i~~~~~i~~~~~ 318 (353)
T TIGR01208 250 KIRGRVVVGEGAKI-VNSVIRGPAVIGEDCIIEN----SYIGPYTSIGEGVVIRD-A-----EVEHSIVLDESVIEGVQA 318 (353)
T ss_pred EEcCCEEECCCCEE-eCCEEECCcEECCCCEEcC----cEECCCCEECCCCEEee-e-----EEEeeEEcCCCEEcCCcc
Confidence 34444444444444 3333433444444444431 24444455554444431 0 1126889999999888 4
Q ss_pred EEeceeeCCCcEEccCcEEcc--CcEECCCcEEc
Q 024153 133 VLHGCTVEDEAFVGMGATLLD--GVYVEKHAMVA 164 (271)
Q Consensus 133 ~i~~~~Ig~~~~Ig~~~~I~~--~v~Ig~~~~Ig 164 (271)
.+.+++||++|.|+.++.+.. +..+|+++.|+
T Consensus 319 ~~~~~ii~~~~~i~~~~~~~~~~~~~~g~~~~~~ 352 (353)
T TIGR01208 319 RIVDSVIGKKVRIKGNRRRPGDLRLTIGDYSQVE 352 (353)
T ss_pred eeecCEEcCCCEECCCcccccccceEEcCCceec
Confidence 888899999999999888864 35677777654
No 153
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=98.98 E-value=4.5e-09 Score=86.99 Aligned_cols=114 Identities=20% Similarity=0.191 Sum_probs=83.4
Q ss_pred CEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEec-eeeCCCcEEccC-cEEccC
Q 024153 77 SSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHG-CTVEDEAFVGMG-ATLLDG 154 (271)
Q Consensus 77 ~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~-~~Ig~~~~Ig~~-~~I~~~ 154 (271)
+.+.+...+.-....+.+|++|.++.++.+.. ....+||+++.+++++.+.. ...++...-... ......
T Consensus 53 ~~i~~~~~~~~~~~~~~iG~~~~i~~~~~~~~--------~~~i~ig~~~~i~~~v~i~~~~h~~~~~~~~~~~~~~~~~ 124 (190)
T COG0110 53 AVIRPPVRIDLGEKNLTIGDLCFIGVNVVILV--------GEGITIGDNVVVGPNVTIYTNSHPGDFVTANIGALVGAGP 124 (190)
T ss_pred cEECCCEEEecCCcceEECCeeEEcCCcEEEe--------cCCeEECCCceECCCcEEecCCCCCChhhcccCCceecCC
Confidence 44444433332224588999999999999753 23678999999999888854 233333322222 444556
Q ss_pred cEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHHHHH
Q 024153 155 VYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAF 199 (271)
Q Consensus 155 v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~~~~ 199 (271)
++||++|+||++++|.++++|++++++ |..|.+.+++|++.+..
T Consensus 125 v~IG~~vwIG~~a~IlpGV~IG~gavi-gagsVVtkdvp~~~iv~ 168 (190)
T COG0110 125 VTIGEDVWIGAGAVILPGVTIGEGAVI-GAGSVVTKDVPPYGIVA 168 (190)
T ss_pred eEECCCeEEcCccEECCCEEECCCcEE-eeCCEEeCccCCCeEEe
Confidence 999999999999999999999999998 67799999999887644
No 154
>PLN02357 serine acetyltransferase
Probab=98.97 E-value=1.2e-08 Score=91.34 Aligned_cols=68 Identities=21% Similarity=0.315 Sum_probs=47.4
Q ss_pred eEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEE-eceeeCCCcEEccCcEEccCcEECCCcEE
Q 024153 92 ISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVL-HGCTVEDEAFVGMGATLLDGVYVEKHAMV 163 (271)
Q Consensus 92 ~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i-~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~I 163 (271)
++||++|.|..+|+|.+.... . ..+.+.||++|.||.++.| .+++||+++.||++++|..+ |.+++++
T Consensus 253 avIGdnV~I~~gVtIGg~g~~-~-g~~~piIGd~V~IGagA~IlggV~IGdga~IGAgSVV~~d--VP~~~~v 321 (360)
T PLN02357 253 AVVGNNVSILHNVTLGGTGKQ-S-GDRHPKIGDGVLIGAGTCILGNITIGEGAKIGAGSVVLKD--VPPRTTA 321 (360)
T ss_pred CEECCCCEEeCCceecCcccc-C-CccCceeCCCeEECCceEEECCeEECCCCEECCCCEECcc--cCCCcEE
Confidence 345566666666666542111 1 1235899999999999887 56999999999999999875 4455443
No 155
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.94 E-value=7.2e-09 Score=96.63 Aligned_cols=94 Identities=18% Similarity=0.379 Sum_probs=70.9
Q ss_pred CeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcC-------------------CcEECc
Q 024153 70 DVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGD-------------------NVTVGH 130 (271)
Q Consensus 70 ~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~-------------------~~~i~~ 130 (271)
++.||++|.| +++.|.. +.||++|.|+++|.|. ++.|+. ++.|++
T Consensus 308 ~~~ig~~~~i-~~~~i~~----svi~~~~~Ig~~~~i~-----------~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~ 371 (429)
T PRK02862 308 ESIIAEGCII-KNCSIHH----SVLGIRSRIESGCTIE-----------DTLVMGADFYESSEEREELRKEGKPPLGIGE 371 (429)
T ss_pred eCEECCCCEE-CCcEEEE----EEEeCCcEECCCCEEE-----------eeEEecCcccccccccccccccCCcccEECC
Confidence 4788888888 7787762 6999999999999998 466654 688999
Q ss_pred CcEEeceeeCCCcEEccCcEEccCcEECC------CcEEccC-cEecCCceeCCCc
Q 024153 131 SAVLHGCTVEDEAFVGMGATLLDGVYVEK------HAMVAAG-ALVRQNTKIPCGE 179 (271)
Q Consensus 131 ~~~i~~~~Ig~~~~Ig~~~~I~~~v~Ig~------~~~Ig~~-svV~~~~~I~~~~ 179 (271)
+|.|.+++|+++|.||.++.|.++..+.. +++|+.+ ++|++++.+++++
T Consensus 372 ~~~i~~~ii~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (429)
T PRK02862 372 GTTIKRAIIDKNARIGNNVRIVNKDNVEEADREDQGFYIRDGIVVVVKNAVIPDGT 427 (429)
T ss_pred CCEEEEEEECCCcEECCCcEEecCCCcccccccccceEeeCCEEEEcCCcCCCCCC
Confidence 99999999999999999999865544333 5555555 4455555555544
No 156
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=98.92 E-value=9.4e-09 Score=96.07 Aligned_cols=100 Identities=24% Similarity=0.410 Sum_probs=61.0
Q ss_pred eECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECC---------------C---CEECCCCEEecCCcCCCC
Q 024153 54 VVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGS---------------G---TNIQDNSLVHVAKSNLAG 115 (271)
Q Consensus 54 ~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~---------------~---~~I~~~~~I~~~~~~~~~ 115 (271)
.|+++|.|+ ++.|. ++.||++|.|+++|.|... +.+|. + +.|+++|.+.
T Consensus 317 ~I~~~~~I~-~~~I~-~svI~~~~~Ig~~~~I~~s---ii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-------- 383 (436)
T PLN02241 317 IISHGCFLR-ECKIE-HSVVGLRSRIGEGVEIEDT---VMMGADYYETEEEIASLLAEGKVPIGIGENTKIR-------- 383 (436)
T ss_pred EEcCCcEEc-CeEEE-eeEEcCCCEECCCCEEEEe---EEECCCccccccccccccccCCcceEECCCCEEc--------
Confidence 355555555 55553 4567777777777776644 55563 2 2677777765
Q ss_pred CccceEEcCCcEECcCcEEec-eeeCCCcEEccCcEEccC-cEECCCcEEccCcEe
Q 024153 116 KVLPTIIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDG-VYVEKHAMVAAGALV 169 (271)
Q Consensus 116 ~~~~~~Ig~~~~i~~~~~i~~-~~Ig~~~~Ig~~~~I~~~-v~Ig~~~~Ig~~svV 169 (271)
+++|++++.|++++.+.+ .-+.+...+|.++.+..+ |+||+++.|+++|+|
T Consensus 384 ---~~vI~~~v~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 436 (436)
T PLN02241 384 ---NAIIDKNARIGKNVVIINKDGVQEADREEEGYYIRSGIVVILKNAVIPDGTVI 436 (436)
T ss_pred ---ceEecCCCEECCCcEEecccccCCccccccccEEeCCEEEEcCCcEeCCCCCC
Confidence 567777777777777743 344444444555555555 577777777776653
No 157
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=98.90 E-value=2.2e-08 Score=79.54 Aligned_cols=105 Identities=25% Similarity=0.275 Sum_probs=70.6
Q ss_pred ceECCCCEECC-CcEEec-CeEECCCCEEccCcEEecC-CCc--------eEECCCCEECCCCEEecCCcCCCCCccceE
Q 024153 53 PVVNKDVFLAP-SASIIG-DVQVGRGSSIWYGCVLRGD-VNS--------ISIGSGTNIQDNSLVHVAKSNLAGKVLPTI 121 (271)
Q Consensus 53 ~~i~~~~~I~~-~~~i~~-~v~IG~~~~I~~~~~I~~~-~~~--------~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~ 121 (271)
..||++++|++ .+.+.. .+.||++|.|++++.|... ... ..++++...++ . .........+++
T Consensus 2 ~~iG~~s~i~~~~~~~~~~~i~IG~~~~I~~~v~i~~~~~H~~~~~~~~p~~~~~~~~~~~-~-----~~~~~~~~~~~~ 75 (145)
T cd03349 2 ISVGDYSYGSGPDCDVGGDKLSIGKFCSIAPGVKIGLGGNHPTDWVSTYPFYIFGGEWEDD-A-----KFDDWPSKGDVI 75 (145)
T ss_pred EEEeCceeeCCCCceEeCCCeEECCCCEECCCCEECCCCCCCCCCccccceEeeccccccc-c-----ccccccccCCcE
Confidence 46888888988 555554 7999999999999998743 111 01111111000 0 000111235899
Q ss_pred EcCCcEECcCcEE-eceeeCCCcEEccCcEEccCcEECCCcEEcc
Q 024153 122 IGDNVTVGHSAVL-HGCTVEDEAFVGMGATLLDGVYVEKHAMVAA 165 (271)
Q Consensus 122 Ig~~~~i~~~~~i-~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~ 165 (271)
||++|+|+.++.+ .+++||++|.||++++|.++ +.+++++++
T Consensus 76 Ig~~~~Ig~~~~i~~gv~Ig~~~vIgags~V~~~--v~~~~v~~G 118 (145)
T cd03349 76 IGNDVWIGHGATILPGVTIGDGAVIAAGAVVTKD--VPPYAIVGG 118 (145)
T ss_pred ECCCCEECCCCEEeCCCEECCCCEECCCCEEccc--cCCCeEEEe
Confidence 9999999999988 56999999999999999885 567666653
No 158
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.82 E-value=4.6e-08 Score=89.75 Aligned_cols=83 Identities=13% Similarity=0.200 Sum_probs=59.9
Q ss_pred EECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEeceeeCCCcEEccCcEE
Q 024153 72 QVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATL 151 (271)
Q Consensus 72 ~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I 151 (271)
.+...+.|++++.|. + +.||++|.|+. .+. ++.||++|.|+++|.|.+++|+++|.|+.++.|
T Consensus 278 ~~~~~~~i~~~~~i~-~---~~Ig~~~~I~~--~v~-----------~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i 340 (380)
T PRK05293 278 PNLPPQYIAENAKVK-N---SLVVEGCVVYG--TVE-----------HSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVI 340 (380)
T ss_pred cCCCCCEECCCCEEe-c---CEECCCCEEcc--eec-----------ceEEcCCCEECCCCEEECCEEeCCCEECCCeEE
Confidence 333445555555553 2 45777777752 232 689999999999999999999999999999887
Q ss_pred ccCcEECCCcEEccCcEecCC
Q 024153 152 LDGVYVEKHAMVAAGALVRQN 172 (271)
Q Consensus 152 ~~~v~Ig~~~~Ig~~svV~~~ 172 (271)
.. ++|++++.|+.++.+.++
T Consensus 341 ~~-~ii~~~~~i~~~~~i~~~ 360 (380)
T PRK05293 341 ER-AIIGENAVIGDGVIIGGG 360 (380)
T ss_pred eE-EEECCCCEECCCCEEcCC
Confidence 44 777777777777666553
No 159
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=1.6e-08 Score=87.22 Aligned_cols=70 Identities=26% Similarity=0.349 Sum_probs=40.4
Q ss_pred CceECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcC
Q 024153 52 APVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHS 131 (271)
Q Consensus 52 ~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~ 131 (271)
.+.|++++.++|++.|++++.||+++.|++|+.|+. ..|=++|.|.+|+++. +++||-.+.||..
T Consensus 288 dVyIhPsakvhptAkiGPNVSIga~vrvg~GvRl~~----sIIl~d~ei~enavVl-----------~sIigw~s~iGrW 352 (407)
T KOG1460|consen 288 DVYIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLRE----SIILDDAEIEENAVVL-----------HSIIGWKSSIGRW 352 (407)
T ss_pred eeEEcCcceeCCccccCCCceecCCceecCCceeee----eeeccCcEeeccceEE-----------eeeecccccccce
Confidence 355566666666666666666666666666666653 3555666666665554 3555555555555
Q ss_pred cEEec
Q 024153 132 AVLHG 136 (271)
Q Consensus 132 ~~i~~ 136 (271)
+.+.+
T Consensus 353 aRVe~ 357 (407)
T KOG1460|consen 353 ARVEG 357 (407)
T ss_pred eeecc
Confidence 54433
No 160
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=98.79 E-value=9.8e-09 Score=79.64 Aligned_cols=114 Identities=17% Similarity=0.219 Sum_probs=93.0
Q ss_pred hcCCCceECCCCEECCCcEEe---cCeEECCCCEEccCcEEec--------C--CCceEECCCCEECCCCEEecCCcCCC
Q 024153 48 IFDKAPVVNKDVFLAPSASII---GDVQVGRGSSIWYGCVLRG--------D--VNSISIGSGTNIQDNSLVHVAKSNLA 114 (271)
Q Consensus 48 ~~~~~~~i~~~~~I~~~~~i~---~~v~IG~~~~I~~~~~I~~--------~--~~~~~IG~~~~I~~~~~I~~~~~~~~ 114 (271)
-+...+.|+++|.+||.+.+. |++.||+|+.|.+.++|.. + ...+.||.+....-+|...
T Consensus 22 ~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~NvFeVgc~s~------- 94 (190)
T KOG4042|consen 22 DIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNVFEVGCKSS------- 94 (190)
T ss_pred ccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEeccceEEeechhh-------
Confidence 355678899999999999885 6899999999999999875 1 2358899998888887776
Q ss_pred CCccceEEcCCcEECcCcEEec-eeeCCCcEEccCcEEccCcEECCCcEEccCcEecCC
Q 024153 115 GKVLPTIIGDNVTVGHSAVLHG-CTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQN 172 (271)
Q Consensus 115 ~~~~~~~Ig~~~~i~~~~~i~~-~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~ 172 (271)
-..+|++..|+..+.+.. |++-++|.+|+.|.+..+-.+.++++|-+..-+..-
T Consensus 95 ----A~kvGd~NVieskayvg~gv~vssgC~vGA~c~v~~~q~lpent~vYga~~L~R~ 149 (190)
T KOG4042|consen 95 ----AKKVGDRNVIESKAYVGDGVSVSSGCSVGAKCTVFSHQNLPENTSVYGATNLSRT 149 (190)
T ss_pred ----hhhhcCcceEeeeeEecCCcEEcCCceeccceEEecccccCCcceEEccccccce
Confidence 367899999988888754 888888999999999888888888888766665543
No 161
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=98.75 E-value=7.6e-08 Score=87.65 Aligned_cols=50 Identities=16% Similarity=0.454 Sum_probs=28.8
Q ss_pred ceEEcCCcEECcCcEEeceeeCCCcEEccCcEEccCcEECCCcEEccCcEe
Q 024153 119 PTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALV 169 (271)
Q Consensus 119 ~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV 169 (271)
++.||++|.|+.+|.|.+++|++++.|+.++.| .+++||+++.|++++.+
T Consensus 310 ~s~i~~~~~I~~~~~i~~sii~~~~~v~~~~~l-~~~ivg~~~~i~~~~~i 359 (361)
T TIGR02091 310 HSVLGIRVRIGSGSTVEDSVIMGDVGIGRGAVI-RNAIIDKNVRIGEGVVI 359 (361)
T ss_pred ccEECCCCEECCCCEEeeeEEeCCCEECCCCEE-eeeEECCCCEECCCCEe
Confidence 355566666666666666666666666666655 34555555555555544
No 162
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=98.72 E-value=7.3e-08 Score=86.74 Aligned_cols=96 Identities=23% Similarity=0.424 Sum_probs=78.8
Q ss_pred hhcCCCceECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCc
Q 024153 47 NIFDKAPVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNV 126 (271)
Q Consensus 47 ~~~~~~~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~ 126 (271)
.++.+...|.......|++.+..+..+ .++.|..||+|.|...+..|+.++.|++++.|. ++.|..+|
T Consensus 268 ~lyd~~w~IyT~~~~~pPak~~~~s~v-~nSLv~~GciI~G~V~nSVL~~~v~I~~gs~i~-----------~svim~~~ 335 (393)
T COG0448 268 NLYDRNWPIYTKNKNLPPAKFVNDSEV-SNSLVAGGCIISGTVENSVLFRGVRIGKGSVIE-----------NSVIMPDV 335 (393)
T ss_pred cccCCCCceeecCCCCCCceEecCceE-eeeeeeCCeEEEeEEEeeEEecCeEECCCCEEE-----------eeEEeCCc
Confidence 345555556666777888888776664 677777777777766678999999999999998 69999999
Q ss_pred EECcCcEEeceeeCCCcEEccCcEEccC
Q 024153 127 TVGHSAVLHGCTVEDEAFVGMGATLLDG 154 (271)
Q Consensus 127 ~i~~~~~i~~~~Ig~~~~Ig~~~~I~~~ 154 (271)
.||.+|.|..++|.++|.|+.|+.|...
T Consensus 336 ~IG~~~~l~~aIIDk~v~I~~g~~i~~~ 363 (393)
T COG0448 336 EIGEGAVLRRAIIDKNVVIGEGVVIGGD 363 (393)
T ss_pred EECCCCEEEEEEeCCCcEeCCCcEEcCC
Confidence 9999999999999999999999888776
No 163
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=1.2e-07 Score=81.92 Aligned_cols=74 Identities=22% Similarity=0.319 Sum_probs=55.6
Q ss_pred ceECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCc
Q 024153 53 PVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSA 132 (271)
Q Consensus 53 ~~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~ 132 (271)
+.|-.+++|||++.+.+.++||.|+ .||.++.||+++.|. .++|-+++.|.+|+
T Consensus 283 a~IigdVyIhPsakvhptAkiGPNV---------------SIga~vrvg~GvRl~-----------~sIIl~d~ei~ena 336 (407)
T KOG1460|consen 283 AEIIGDVYIHPSAKVHPTAKIGPNV---------------SIGANVRVGPGVRLR-----------ESIILDDAEIEENA 336 (407)
T ss_pred ceEEeeeEEcCcceeCCccccCCCc---------------eecCCceecCCceee-----------eeeeccCcEeeccc
Confidence 3455555555555555555555544 566777788888887 68999999999999
Q ss_pred EEeceeeCCCcEEccCcEEc
Q 024153 133 VLHGCTVEDEAFVGMGATLL 152 (271)
Q Consensus 133 ~i~~~~Ig~~~~Ig~~~~I~ 152 (271)
++-+++||-++.||..+.|.
T Consensus 337 vVl~sIigw~s~iGrWaRVe 356 (407)
T KOG1460|consen 337 VVLHSIIGWKSSIGRWARVE 356 (407)
T ss_pred eEEeeeecccccccceeeec
Confidence 99999999999999888764
No 164
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=98.68 E-value=4.7e-08 Score=87.02 Aligned_cols=78 Identities=24% Similarity=0.405 Sum_probs=69.0
Q ss_pred eEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEeceeeCCCcEEccCcEEccCcEECCCcEEccCcEecC
Q 024153 92 ISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQ 171 (271)
Q Consensus 92 ~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~ 171 (271)
..+|++|.|++++.|. .+.||++|.||+.+.+.++.|-+++.||.++.| ++|.||.++.||++|.+.
T Consensus 335 ~iv~~~t~i~~~s~ik-----------~SviG~nC~Ig~~~~v~nSilm~nV~vg~G~~I-ensIIg~gA~Ig~gs~L~- 401 (433)
T KOG1462|consen 335 SIVGDNTQIGENSNIK-----------RSVIGSNCDIGERVKVANSILMDNVVVGDGVNI-ENSIIGMGAQIGSGSKLK- 401 (433)
T ss_pred hccCCCceecccceee-----------eeeecCCccccCCcEEEeeEeecCcEecCCcce-ecceecccceecCCCeee-
Confidence 6778888888888887 689999999999999999999999999999999 569999999999999985
Q ss_pred CceeCCCcEEe
Q 024153 172 NTKIPCGEVWG 182 (271)
Q Consensus 172 ~~~I~~~~vv~ 182 (271)
+|.|+++-++-
T Consensus 402 nC~Ig~~yvVe 412 (433)
T KOG1462|consen 402 NCIIGPGYVVE 412 (433)
T ss_pred eeEecCCcEEc
Confidence 57888887763
No 165
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.64 E-value=2e-07 Score=87.00 Aligned_cols=66 Identities=20% Similarity=0.416 Sum_probs=38.3
Q ss_pred eECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECC------------------CCEECCCCEEecCCcCCCC
Q 024153 54 VVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGS------------------GTNIQDNSLVHVAKSNLAG 115 (271)
Q Consensus 54 ~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~------------------~~~I~~~~~I~~~~~~~~~ 115 (271)
.|+++|.| +++.|. ++.||++|.|++++.|..+ +..|+ +|.|+++|.|.
T Consensus 310 ~ig~~~~i-~~~~i~-~svi~~~~~Ig~~~~i~~s---vi~~~~~~p~~~~~~~~~~~~~~~~~Ig~~~~i~-------- 376 (429)
T PRK02862 310 IIAEGCII-KNCSIH-HSVLGIRSRIESGCTIEDT---LVMGADFYESSEEREELRKEGKPPLGIGEGTTIK-------- 376 (429)
T ss_pred EECCCCEE-CCcEEE-EEEEeCCcEECCCCEEEee---EEecCcccccccccccccccCCcccEECCCCEEE--------
Confidence 45555555 444453 4566666666666666643 33342 56666666665
Q ss_pred CccceEEcCCcEECcCcEEe
Q 024153 116 KVLPTIIGDNVTVGHSAVLH 135 (271)
Q Consensus 116 ~~~~~~Ig~~~~i~~~~~i~ 135 (271)
++.|+++|.|++++.+.
T Consensus 377 ---~~ii~~~~~i~~~~~~~ 393 (429)
T PRK02862 377 ---RAIIDKNARIGNNVRIV 393 (429)
T ss_pred ---EEEECCCcEECCCcEEe
Confidence 46666666666665553
No 166
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.64 E-value=2e-07 Score=86.48 Aligned_cols=69 Identities=25% Similarity=0.362 Sum_probs=42.7
Q ss_pred cCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEeceeeCCCcEEccC
Q 024153 69 GDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMG 148 (271)
Q Consensus 69 ~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~ 148 (271)
.++.||++|.|+ ++.|.+ +.||++|.|+++|.|. +++|+++|.|++++.|.+++|+++|.|+++
T Consensus 314 ~~~~ig~~~~I~-~~~i~~----svIg~~~~I~~~~~i~-----------~sii~~~~~i~~~~~i~~~ii~~~~~i~~~ 377 (407)
T PRK00844 314 QDSLVSAGSIIS-GATVRN----SVLSPNVVVESGAEVE-----------DSVLMDGVRIGRGAVVRRAILDKNVVVPPG 377 (407)
T ss_pred EeCEEcCCCEEC-CeeeEc----CEECCCCEECCCCEEe-----------eeEECCCCEECCCCEEEeeEECCCCEECCC
Confidence 345566666665 555552 4666666666666665 456666666666666666666666666666
Q ss_pred cEEcc
Q 024153 149 ATLLD 153 (271)
Q Consensus 149 ~~I~~ 153 (271)
+.|..
T Consensus 378 ~~i~~ 382 (407)
T PRK00844 378 ATIGV 382 (407)
T ss_pred CEECC
Confidence 55544
No 167
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=98.62 E-value=1.5e-07 Score=86.04 Aligned_cols=66 Identities=23% Similarity=0.469 Sum_probs=46.7
Q ss_pred eEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEeceeeCCCcEEccCcEEccCcEECCCcEEccCcEecC
Q 024153 92 ISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQ 171 (271)
Q Consensus 92 ~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~ 171 (271)
+.||++|.|+ ..+. ++.|+++|.|+.+|.|.+++|+++|.|+.++.+.. +.||++++|++++.+..
T Consensus 290 ~~Ig~~~~i~--~~v~-----------~s~i~~~~~I~~~~~i~~sii~~~~~I~~~~~i~~-~ii~~~~~v~~~~~~~~ 355 (369)
T TIGR02092 290 SLVANGCIIE--GKVE-----------NSILSRGVHVGKDALIKNCIIMQRTVIGEGAHLEN-VIIDKDVVIEPNVKIAG 355 (369)
T ss_pred eEEcCCCEEe--eEEe-----------CCEECCCCEECCCCEEEeeEEeCCCEECCCCEEEE-EEECCCCEECCCCEeCC
Confidence 4566666665 2343 57788888888888888888888888888877743 77777777777766643
No 168
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=98.60 E-value=3.1e-07 Score=83.62 Aligned_cols=82 Identities=21% Similarity=0.324 Sum_probs=64.8
Q ss_pred eECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcE
Q 024153 54 VVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAV 133 (271)
Q Consensus 54 ~i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~ 133 (271)
.+.+.++|++.+.+ +++.||++|.|+++ .+. + +.||++|.|+++|.|. ++.|++++.|++++.
T Consensus 279 ~~~~~~~i~~~~~i-~~~~ig~~~~I~~~-~v~-~---s~i~~~~~I~~~~~i~-----------~sii~~~~~v~~~~~ 341 (361)
T TIGR02091 279 FLPPAKFVDSDAQV-VDSLVSEGCIISGA-TVS-H---SVLGIRVRIGSGSTVE-----------DSVIMGDVGIGRGAV 341 (361)
T ss_pred CCCCceEecCCCEE-ECCEECCCCEECCC-EEE-c---cEECCCCEECCCCEEe-----------eeEEeCCCEECCCCE
Confidence 34556677777644 56778888888765 554 2 6899999999999997 689999999999999
Q ss_pred EeceeeCCCcEEccCcEEc
Q 024153 134 LHGCTVEDEAFVGMGATLL 152 (271)
Q Consensus 134 i~~~~Ig~~~~Ig~~~~I~ 152 (271)
+++++||+++.|+.++.|.
T Consensus 342 l~~~ivg~~~~i~~~~~i~ 360 (361)
T TIGR02091 342 IRNAIIDKNVRIGEGVVIG 360 (361)
T ss_pred EeeeEECCCCEECCCCEeC
Confidence 9988888888888887764
No 169
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.53 E-value=4.6e-07 Score=84.48 Aligned_cols=65 Identities=25% Similarity=0.367 Sum_probs=31.6
Q ss_pred eEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEeceeeCCCcEEccCcE
Q 024153 71 VQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGAT 150 (271)
Q Consensus 71 v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~ 150 (271)
+.||++|.| .++.|.. +.||++|.|+++|.|. +++|+++|.|++++.|.+++|+++|.|++++.
T Consensus 328 s~i~~~~~i-~~~~i~~----svi~~~~~I~~~~~i~-----------~svi~~~~~I~~~~~i~~~ii~~~~~i~~~~~ 391 (425)
T PRK00725 328 SLVSGGCII-SGAVVRR----SVLFSRVRVNSFSNVE-----------DSVLLPDVNVGRSCRLRRCVIDRGCVIPEGMV 391 (425)
T ss_pred CEEcCCcEE-cCccccC----CEECCCCEECCCCEEe-----------eeEEcCCCEECCCCEEeeEEECCCCEECCCCE
Confidence 444444444 3444331 3555555555555554 35555555555555555555554444444433
Q ss_pred E
Q 024153 151 L 151 (271)
Q Consensus 151 I 151 (271)
|
T Consensus 392 i 392 (425)
T PRK00725 392 I 392 (425)
T ss_pred E
Confidence 3
No 170
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=98.52 E-value=2e-07 Score=81.64 Aligned_cols=99 Identities=21% Similarity=0.265 Sum_probs=69.3
Q ss_pred EECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEeceee
Q 024153 60 FLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTV 139 (271)
Q Consensus 60 ~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~I 139 (271)
...|++.+.+++.+..-..++.+|.|..+ +.||.+|.|++++.|. +|+|.....+...+.+..+.+
T Consensus 254 r~~p~~~i~~nvlvd~~~~iG~~C~Ig~~---vvIG~r~~i~~gV~l~-----------~s~il~~~~~~~~s~i~s~iv 319 (371)
T KOG1322|consen 254 RLLPGSKIVGNVLVDSIASIGENCSIGPN---VVIGPRVRIEDGVRLQ-----------DSTILGADYYETHSEISSSIV 319 (371)
T ss_pred cccCCccccccEeeccccccCCccEECCC---ceECCCcEecCceEEE-----------eeEEEccceechhHHHHhhhc
Confidence 44444444444444444444444444433 4677888888888887 688888888888888888888
Q ss_pred CCCcEEccCcEEccCcEECCCcEEccCcEecCC
Q 024153 140 EDEAFVGMGATLLDGVYVEKHAMVAAGALVRQN 172 (271)
Q Consensus 140 g~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~ 172 (271)
|-++.||.++.|...++||++++|.....|..+
T Consensus 320 g~~~~IG~~~~id~~a~lG~nV~V~d~~~vn~g 352 (371)
T KOG1322|consen 320 GWNVPIGIWARIDKNAVLGKNVIVADEDYVNEG 352 (371)
T ss_pred cccccccCceEEecccEeccceEEecccccccc
Confidence 888888888888888888888888765555443
No 171
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.51 E-value=4.3e-07 Score=84.70 Aligned_cols=69 Identities=13% Similarity=0.279 Sum_probs=60.1
Q ss_pred eEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEeceeeCCCcEEccCcEEccCcEECCCcEEccCcEecC
Q 024153 92 ISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQ 171 (271)
Q Consensus 92 ~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~ 171 (271)
+.||++|.| ++|.|. +++||++|.|+.++.|.+|+|+++|.|+.+|.| .+++|+++|.|++++++..
T Consensus 328 s~i~~~~~i-~~~~i~-----------~svi~~~~~I~~~~~i~~svi~~~~~I~~~~~i-~~~ii~~~~~i~~~~~i~~ 394 (425)
T PRK00725 328 SLVSGGCII-SGAVVR-----------RSVLFSRVRVNSFSNVEDSVLLPDVNVGRSCRL-RRCVIDRGCVIPEGMVIGE 394 (425)
T ss_pred CEEcCCcEE-cCcccc-----------CCEECCCCEECCCCEEeeeEEcCCCEECCCCEE-eeEEECCCCEECCCCEECC
Confidence 578888888 677775 689999999999999999999999999999999 5588999999998888876
Q ss_pred Cc
Q 024153 172 NT 173 (271)
Q Consensus 172 ~~ 173 (271)
++
T Consensus 395 ~~ 396 (425)
T PRK00725 395 DP 396 (425)
T ss_pred CC
Confidence 53
No 172
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.46 E-value=8.4e-07 Score=82.28 Aligned_cols=68 Identities=22% Similarity=0.368 Sum_probs=59.9
Q ss_pred eEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEeceeeCCCcEEccCcEEccCcEECCCcEEccCcEecC
Q 024153 92 ISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQ 171 (271)
Q Consensus 92 ~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~ 171 (271)
+.||++|.|+ ++.|. ++.||++|.|++++.|.+++|+++|.|+.+|.|.. ++|++++.|++++++..
T Consensus 316 ~~ig~~~~I~-~~~i~-----------~svIg~~~~I~~~~~i~~sii~~~~~i~~~~~i~~-~ii~~~~~i~~~~~i~~ 382 (407)
T PRK00844 316 SLVSAGSIIS-GATVR-----------NSVLSPNVVVESGAEVEDSVLMDGVRIGRGAVVRR-AILDKNVVVPPGATIGV 382 (407)
T ss_pred CEEcCCCEEC-CeeeE-----------cCEECCCCEECCCCEEeeeEECCCCEECCCCEEEe-eEECCCCEECCCCEECC
Confidence 5788888887 88886 58999999999999999999999999999999954 89999999999988876
Q ss_pred C
Q 024153 172 N 172 (271)
Q Consensus 172 ~ 172 (271)
+
T Consensus 383 ~ 383 (407)
T PRK00844 383 D 383 (407)
T ss_pred C
Confidence 4
No 173
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=98.43 E-value=1.4e-06 Score=79.71 Aligned_cols=79 Identities=14% Similarity=0.295 Sum_probs=60.2
Q ss_pred CCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEec
Q 024153 57 KDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHG 136 (271)
Q Consensus 57 ~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~ 136 (271)
+.++|++++.| +++.||++|.|+ ..+. ++.||++|.|+++|.|. ++.|++++.|++++.+.+
T Consensus 277 ~p~~i~~~~~i-~~~~Ig~~~~i~--~~v~----~s~i~~~~~I~~~~~i~-----------~sii~~~~~I~~~~~i~~ 338 (369)
T TIGR02092 277 PPTYYAENSKV-ENSLVANGCIIE--GKVE----NSILSRGVHVGKDALIK-----------NCIIMQRTVIGEGAHLEN 338 (369)
T ss_pred CCcEEcCCCEE-EEeEEcCCCEEe--eEEe----CCEECCCCEECCCCEEE-----------eeEEeCCCEECCCCEEEE
Confidence 44556665555 445566666554 2233 36899999999999997 689999999999999999
Q ss_pred eeeCCCcEEccCcEEcc
Q 024153 137 CTVEDEAFVGMGATLLD 153 (271)
Q Consensus 137 ~~Ig~~~~Ig~~~~I~~ 153 (271)
++||+++.|++++.+.+
T Consensus 339 ~ii~~~~~v~~~~~~~~ 355 (369)
T TIGR02092 339 VIIDKDVVIEPNVKIAG 355 (369)
T ss_pred EEECCCCEECCCCEeCC
Confidence 99999998888888744
No 174
>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A ....
Probab=98.42 E-value=3.8e-07 Score=53.75 Aligned_cols=33 Identities=24% Similarity=0.634 Sum_probs=21.2
Q ss_pred eeeCCCcEEccCcEEccCcEECCCcEEccCcEecC
Q 024153 137 CTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQ 171 (271)
Q Consensus 137 ~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~ 171 (271)
++||++|+|++++.| +++||++|+|+++++|.+
T Consensus 2 v~IG~~~~ig~~~~i--gi~igd~~~i~~g~~I~~ 34 (34)
T PF14602_consen 2 VTIGDNCFIGANSTI--GITIGDGVIIGAGVVITA 34 (34)
T ss_dssp EEE-TTEEE-TT-EE--TSEE-TTEEE-TTEEEES
T ss_pred eEECCCEEECccccc--CCEEcCCCEECCCCEEcC
Confidence 567788888888887 588888888888877753
No 175
>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]
Probab=98.40 E-value=6.6e-07 Score=74.27 Aligned_cols=44 Identities=18% Similarity=0.292 Sum_probs=39.9
Q ss_pred cEECCCcEEccCcEecCCceeCCCcEEeccCceEccCCCHHHHHH
Q 024153 155 VYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAF 199 (271)
Q Consensus 155 v~Ig~~~~Ig~~svV~~~~~I~~~~vv~G~pa~~~~~~~~~~~~~ 199 (271)
=+||||++||+++.|.++++|++++++ |..+.+++|+|+.....
T Consensus 201 P~Igd~vliGaGvtILgnV~IGegavI-aAGsvV~kDVP~~~~Av 244 (269)
T KOG4750|consen 201 PKIGDNVLIGAGVTILGNVTIGEGAVI-AAGSVVLKDVPPNTLAV 244 (269)
T ss_pred CcccCCeEEccccEEeCCeeECCCcEE-eccceEEeccCCCceec
Confidence 389999999999999999999999998 56699999999988765
No 176
>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix. A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....
Probab=98.24 E-value=1.2e-06 Score=52.21 Aligned_cols=35 Identities=17% Similarity=0.453 Sum_probs=27.9
Q ss_pred ceeeCCCcEEccCcEEccCcEECCCcEEccCcEec
Q 024153 136 GCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVR 170 (271)
Q Consensus 136 ~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~ 170 (271)
++.||++|+|++++.|.++++||+++.|+++++|.
T Consensus 1 ~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~I~ 35 (36)
T PF00132_consen 1 NVVIGDNVIIGPNAVIGGGVVIGDNCVIGPGVVIG 35 (36)
T ss_dssp TEEEETTEEEETTEEEETTEEE-TTEEEETTEEEE
T ss_pred CCEEcCCCEECCCcEecCCCEECCCCEEcCCCEEC
Confidence 36788888888888888888888888888888774
No 177
>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A ....
Probab=98.18 E-value=2.8e-06 Score=50.05 Aligned_cols=32 Identities=31% Similarity=0.651 Sum_probs=17.8
Q ss_pred eEEcCCcEECcCcEEeceeeCCCcEEccCcEEc
Q 024153 120 TIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLL 152 (271)
Q Consensus 120 ~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~ 152 (271)
+.||++|+|++++.+ +++|||+|.|++|++|.
T Consensus 2 v~IG~~~~ig~~~~i-gi~igd~~~i~~g~~I~ 33 (34)
T PF14602_consen 2 VTIGDNCFIGANSTI-GITIGDGVIIGAGVVIT 33 (34)
T ss_dssp EEE-TTEEE-TT-EE-TSEE-TTEEE-TTEEEE
T ss_pred eEECCCEEECccccc-CCEEcCCCEECCCCEEc
Confidence 456666666666666 56777777777776653
No 178
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=97.90 E-value=9.8e-05 Score=66.85 Aligned_cols=53 Identities=17% Similarity=0.427 Sum_probs=45.2
Q ss_pred ceEEcCCcEECcCcEEeceeeCCCcEEccCcEEccCcEECCCcEEccCcEecCC
Q 024153 119 PTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQN 172 (271)
Q Consensus 119 ~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~ 172 (271)
+++|+.++.|+.++.|.+|+|-.+|.||.+|.|.. +.|..+|.|+.|+++..+
T Consensus 311 nSVL~~~v~I~~gs~i~~svim~~~~IG~~~~l~~-aIIDk~v~I~~g~~i~~~ 363 (393)
T COG0448 311 NSVLFRGVRIGKGSVIENSVIMPDVEIGEGAVLRR-AIIDKNVVIGEGVVIGGD 363 (393)
T ss_pred eeEEecCeEECCCCEEEeeEEeCCcEECCCCEEEE-EEeCCCcEeCCCcEEcCC
Confidence 78999999999999999999999999999998854 777777777777777655
No 179
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=97.87 E-value=0.00025 Score=59.38 Aligned_cols=94 Identities=13% Similarity=0.184 Sum_probs=43.3
Q ss_pred ECCCCEECCC-cEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcE
Q 024153 55 VNKDVFLAPS-ASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAV 133 (271)
Q Consensus 55 i~~~~~I~~~-~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~ 133 (271)
+-+++++... ....+++.||+++.+..+ .+|+...+++++.|.+.-- ..++.|+-+|.+..|+.
T Consensus 6 vPp~Tr~e~~~ivv~gdViIG~nS~l~~~----------V~g~~iivge~v~i~Gdiv-----a~diridmw~kv~gNV~ 70 (277)
T COG4801 6 VPPNTRVEEAIIVVKGDVIIGKNSMLKYG----------VVGEEIIVGERVRIYGDIV-----AKDIRIDMWCKVTGNVI 70 (277)
T ss_pred cCCCCceeeeeEEEeccEEEcccceeeee----------eeeeeEEeccCcEEeeeEE-----ecceeeeeeeEeeccEE
Confidence 4455554333 344556666666655433 4556666666666663110 12344444444443333
Q ss_pred Eec-eeeCCCcEEccCcEEccCcEECCCcEE
Q 024153 134 LHG-CTVEDEAFVGMGATLLDGVYVEKHAMV 163 (271)
Q Consensus 134 i~~-~~Ig~~~~Ig~~~~I~~~v~Ig~~~~I 163 (271)
..+ ..||+.+.|....++.+.-.||+.+.|
T Consensus 71 ve~dayiGE~~sI~gkl~v~gdLdig~dV~I 101 (277)
T COG4801 71 VENDAYIGEFSSIKGKLTVIGDLDIGADVII 101 (277)
T ss_pred EcCceEEeccceeeeeEEEecccccccceEE
Confidence 322 334444444444444444444444444
No 180
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=97.86 E-value=2.7e-05 Score=68.51 Aligned_cols=13 Identities=46% Similarity=0.613 Sum_probs=5.9
Q ss_pred eEEcCCcEECcCc
Q 024153 120 TIIGDNVTVGHSA 132 (271)
Q Consensus 120 ~~Ig~~~~i~~~~ 132 (271)
+.+|.++.||.++
T Consensus 317 ~ivg~~~~IG~~~ 329 (371)
T KOG1322|consen 317 SIVGWNVPIGIWA 329 (371)
T ss_pred hhccccccccCce
Confidence 4444444444444
No 181
>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix. A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....
Probab=97.78 E-value=2.7e-05 Score=46.26 Aligned_cols=33 Identities=24% Similarity=0.366 Sum_probs=15.6
Q ss_pred eEECCCCEEccCcEEecCCCceEECCCCEECCCCEE
Q 024153 71 VQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLV 106 (271)
Q Consensus 71 v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I 106 (271)
+.||+++.|++++.|.++ +.||++|.|++++.|
T Consensus 2 ~~Ig~~~~i~~~~~i~~~---~~Ig~~~~I~~~~~I 34 (36)
T PF00132_consen 2 VVIGDNVIIGPNAVIGGG---VVIGDNCVIGPGVVI 34 (36)
T ss_dssp EEEETTEEEETTEEEETT---EEE-TTEEEETTEEE
T ss_pred CEEcCCCEECCCcEecCC---CEECCCCEEcCCCEE
Confidence 344445555555554433 455555555555544
No 182
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=97.30 E-value=0.0015 Score=54.79 Aligned_cols=60 Identities=13% Similarity=0.225 Sum_probs=30.2
Q ss_pred EcCCcEECcCcEEec------eeeCCCcEEccCcEEccCcEECCCcEEccCcEecCCceeCCCcEE
Q 024153 122 IGDNVTVGHSAVLHG------CTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVW 181 (271)
Q Consensus 122 Ig~~~~i~~~~~i~~------~~Ig~~~~Ig~~~~I~~~v~Ig~~~~Ig~~svV~~~~~I~~~~vv 181 (271)
+|+.+.++.++.+.| |.|+-+|.+..|+.+.++..||+++.|...-+|..+..+++...+
T Consensus 36 ~g~~iivge~v~i~Gdiva~diridmw~kv~gNV~ve~dayiGE~~sI~gkl~v~gdLdig~dV~I 101 (277)
T COG4801 36 VGEEIIVGERVRIYGDIVAKDIRIDMWCKVTGNVIVENDAYIGEFSSIKGKLTVIGDLDIGADVII 101 (277)
T ss_pred eeeeEEeccCcEEeeeEEecceeeeeeeEeeccEEEcCceEEeccceeeeeEEEecccccccceEE
Confidence 344444444444433 455555555555555555555555555555555555555554443
No 183
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=95.45 E-value=0.0031 Score=45.04 Aligned_cols=29 Identities=31% Similarity=0.529 Sum_probs=22.5
Q ss_pred eCCCcEEeccCceEc---------cCCCHHHHHHHHHH
Q 024153 175 IPCGEVWGGNPARFL---------RKLTEEEMAFISQS 203 (271)
Q Consensus 175 I~~~~vv~G~pa~~~---------~~~~~~~~~~~~~~ 203 (271)
|||++++.|+||++. +.+++.++..++++
T Consensus 2 VpPf~~~~G~~a~~~GlN~vGLrR~Gfs~~~i~~l~~a 39 (83)
T PF13720_consen 2 VPPFMLVAGNPARIRGLNLVGLRRRGFSKEEISALRRA 39 (83)
T ss_dssp B-TTEEEETTTTEEEEE-HHHHHHTTS-HHHHHHHHHH
T ss_pred CCCeEEecCCccEEeeeeHHHHHHcCCCHHHHHHHHHH
Confidence 899999999999886 56888887777666
No 184
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=90.10 E-value=0.73 Score=42.98 Aligned_cols=35 Identities=17% Similarity=0.297 Sum_probs=24.9
Q ss_pred ceEEcCCcEECcCcEEeceeeCCCcEEccCcEEcc
Q 024153 119 PTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLD 153 (271)
Q Consensus 119 ~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~ 153 (271)
++.+...+.++++++|..|.|+.++.||.+|+|.+
T Consensus 284 nSil~~~~~vg~~svIe~s~l~~~~~IG~~cIisG 318 (414)
T PF07959_consen 284 NSILEGGVSVGPGSVIEHSHLGGPWSIGSNCIISG 318 (414)
T ss_pred EeEecCCceECCCCEEEeeecCCCCEECCCCEEEC
Confidence 46677777777777777777777777777777644
No 185
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=86.70 E-value=1.7 Score=40.52 Aligned_cols=41 Identities=12% Similarity=0.374 Sum_probs=33.6
Q ss_pred eEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEeceeeCCCc
Q 024153 92 ISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEA 143 (271)
Q Consensus 92 ~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~Ig~~~ 143 (271)
..|..++.++++++|. ++.++.++.||++|+|.|+.+.+..
T Consensus 285 Sil~~~~~vg~~svIe-----------~s~l~~~~~IG~~cIisGv~~~~~~ 325 (414)
T PF07959_consen 285 SILEGGVSVGPGSVIE-----------HSHLGGPWSIGSNCIISGVDINSWS 325 (414)
T ss_pred eEecCCceECCCCEEE-----------eeecCCCCEECCCCEEECCcccccc
Confidence 5778888888888887 6888889999999999888776654
No 186
>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins.
Probab=85.30 E-value=6.9 Score=28.53 Aligned_cols=45 Identities=20% Similarity=0.251 Sum_probs=26.6
Q ss_pred CCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEe
Q 024153 58 DVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVH 107 (271)
Q Consensus 58 ~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~ 107 (271)
.+.|.+++.+.|++....+..+... +.++ +.......|+.++.|.
T Consensus 2 ~~~I~~~~~i~G~i~~~~~v~i~G~--v~G~---i~~~g~v~i~~~~~v~ 46 (101)
T PF04519_consen 2 TTIIGKGTKIEGDISSDGDVRIDGR--VEGN---IKAEGKVKIGGNGEVK 46 (101)
T ss_pred cEEECCCCEEEEEEEECcEEEEEEE--EEEE---EEEceEEEEcCCCEEE
Confidence 3567777777777777666666433 4444 4443355555555555
No 187
>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins.
Probab=79.96 E-value=4.8 Score=29.38 Aligned_cols=79 Identities=19% Similarity=0.210 Sum_probs=37.6
Q ss_pred CEEccCcEEecCCCceEECCCCEECCCCEEecCCcCCCCCccceEEcCCcEECcCcEEeceeeCCCcEEccCcEEccCcE
Q 024153 77 SSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVY 156 (271)
Q Consensus 77 ~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~~v~ 156 (271)
+.|.+++.+.|+ +....+..|... +.+ +......+.|+.++.+++-.-.+.+.|... +.+.+.
T Consensus 3 ~~I~~~~~i~G~---i~~~~~v~i~G~--v~G----------~i~~~g~v~i~~~~~v~G~i~~~~~~i~G~--v~G~v~ 65 (101)
T PF04519_consen 3 TIIGKGTKIEGD---ISSDGDVRIDGR--VEG----------NIKAEGKVKIGGNGEVKGDIKADDVIISGS--VDGNVE 65 (101)
T ss_pred EEECCCCEEEEE---EEECcEEEEEEE--EEE----------EEEEceEEEEcCCCEEEEEEEEeEEEEcCE--EeEEEE
Confidence 455666666655 444444444222 332 344434566666666665444444444332 333344
Q ss_pred ECCCcEEccCcEecCC
Q 024153 157 VEKHAMVAAGALVRQN 172 (271)
Q Consensus 157 Ig~~~~Ig~~svV~~~ 172 (271)
..+...|...+.|..+
T Consensus 66 a~~~v~i~~~~~v~G~ 81 (101)
T PF04519_consen 66 ASGKVEIYGTARVEGD 81 (101)
T ss_pred ECceEEEeCCEEEEEE
Confidence 4344445555544444
No 188
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=60.66 E-value=11 Score=39.03 Aligned_cols=32 Identities=6% Similarity=0.213 Sum_probs=14.2
Q ss_pred eEEcCCcEECcCcE-EeceeeCCCcEEccCcEE
Q 024153 120 TIIGDNVTVGHSAV-LHGCTVEDEAFVGMGATL 151 (271)
Q Consensus 120 ~~Ig~~~~i~~~~~-i~~~~Ig~~~~Ig~~~~I 151 (271)
+.+...+.++++.. ++.+.|+.+..||.+++|
T Consensus 337 s~~~~~~s~~~~s~~vE~s~l~~~~~ig~~~Ii 369 (974)
T PRK13412 337 AVLSGKLTAENATLWIENSHVGEGWKLASRSII 369 (974)
T ss_pred eEecCCcccCCCeEEEEeeEecCCeEEcCCcEE
Confidence 44444444444422 444444444444444444
No 189
>COG1664 CcmA Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane]
Probab=53.16 E-value=1.1e+02 Score=24.11 Aligned_cols=49 Identities=12% Similarity=0.233 Sum_probs=28.5
Q ss_pred ECCCCEECCCcEEecCeEECCCCEEccCcEEecCCCceEECCCCEECCCCEEec
Q 024153 55 VNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHV 108 (271)
Q Consensus 55 i~~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~ 108 (271)
...++.|++++.+.|+...-....|.- .+.|+ +.-...+.|++...|.+
T Consensus 20 ~~~~tli~~g~~f~G~l~f~~~l~IdG--~~~G~---v~s~~~iiv~~~g~V~g 68 (146)
T COG1664 20 LKPETLIGAGTTFKGELVFEGPLRIDG--TFEGD---VHSDGGIVVGESGRVEG 68 (146)
T ss_pred CCCCeEEecCCEEEEEEEecceEEEeE--EEEEE---EEeCCCEEECCccEEEE
Confidence 345677788888777777755555533 45543 23333366666666653
No 190
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=38.45 E-value=94 Score=32.45 Aligned_cols=16 Identities=19% Similarity=0.480 Sum_probs=8.9
Q ss_pred eEECCCCEECCCCEEe
Q 024153 92 ISIGSGTNIQDNSLVH 107 (271)
Q Consensus 92 ~~IG~~~~I~~~~~I~ 107 (271)
..||.+..|+.+++|.
T Consensus 355 s~l~~~~~ig~~~Iis 370 (974)
T PRK13412 355 SHVGEGWKLASRSIIT 370 (974)
T ss_pred eEecCCeEEcCCcEEe
Confidence 3555555555555555
No 191
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=32.36 E-value=81 Score=29.48 Aligned_cols=20 Identities=25% Similarity=0.368 Sum_probs=9.5
Q ss_pred EecCeEECCCCEEccCcEEe
Q 024153 67 IIGDVQVGRGSSIWYGCVLR 86 (271)
Q Consensus 67 i~~~v~IG~~~~I~~~~~I~ 86 (271)
+.|++..|+|+.+...++|.
T Consensus 450 VsGdV~FGknV~LkGtViIi 469 (498)
T KOG2638|consen 450 VSGDVWFGKNVSLKGTVIII 469 (498)
T ss_pred EeccEEeccceEEeeEEEEE
Confidence 44455555555554444433
No 192
>COG1664 CcmA Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane]
Probab=28.22 E-value=2.4e+02 Score=22.27 Aligned_cols=12 Identities=25% Similarity=0.385 Sum_probs=5.3
Q ss_pred CCEEccCcEEec
Q 024153 76 GSSIWYGCVLRG 87 (271)
Q Consensus 76 ~~~I~~~~~I~~ 87 (271)
++.|+.++.+.|
T Consensus 23 ~tli~~g~~f~G 34 (146)
T COG1664 23 ETLIGAGTTFKG 34 (146)
T ss_pred CeEEecCCEEEE
Confidence 344444444443
Done!