Query 024154
Match_columns 271
No_of_seqs 223 out of 938
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 02:29:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024154.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024154hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02859 AMPKbeta_GBD_like AMP- 99.9 4.5E-25 9.7E-30 168.0 9.3 79 20-101 1-79 (79)
2 KOG1764 5'-AMP-activated prote 99.8 6.2E-20 1.3E-24 176.4 7.7 120 143-271 54-174 (381)
3 cd02861 E_set_proteins_like E 99.8 4.7E-19 1E-23 135.1 9.1 78 21-101 2-82 (82)
4 KOG1616 Protein involved in Sn 99.7 1.5E-16 3.2E-21 148.1 9.5 89 16-104 75-163 (289)
5 cd02858 Esterase_N_term Estera 99.3 2.5E-11 5.4E-16 93.4 8.8 76 22-100 7-84 (85)
6 cd02688 E_set E or "early" set 98.8 1.4E-08 3.1E-13 74.9 7.9 70 21-92 4-75 (83)
7 cd02854 Glycogen_branching_enz 98.5 8E-07 1.7E-11 70.6 8.6 67 22-90 6-86 (99)
8 PF02922 CBM_48: Carbohydrate- 98.3 3.1E-07 6.6E-12 69.4 2.7 57 21-79 11-73 (85)
9 PF00571 CBS: CBS domain CBS d 98.1 1.1E-05 2.4E-10 55.9 5.8 49 166-215 8-56 (57)
10 cd02860 Pullulanase_N_term Pul 97.9 3.6E-05 7.9E-10 60.3 7.0 66 22-91 9-86 (100)
11 PF00686 CBM_20: Starch bindin 97.8 6.8E-05 1.5E-09 58.4 6.0 56 21-76 2-68 (96)
12 cd05808 CBM20_alpha_amylase Al 97.7 0.00014 3E-09 56.2 7.1 54 21-76 1-63 (95)
13 cd02855 Glycogen_branching_enz 97.7 0.00023 5E-09 55.4 8.4 68 23-91 23-97 (106)
14 cd02856 Glycogen_debranching_e 97.6 0.00018 3.9E-09 56.8 7.0 53 23-79 11-67 (103)
15 cd04618 CBS_pair_5 The CBS dom 97.6 0.0001 2.2E-09 56.9 5.2 51 165-215 1-51 (98)
16 COG0296 GlgB 1,4-alpha-glucan 97.5 0.00018 3.8E-09 73.7 6.7 161 21-189 36-229 (628)
17 PRK12568 glycogen branching en 97.3 0.00053 1.1E-08 71.5 7.6 66 22-90 139-212 (730)
18 PLN02447 1,4-alpha-glucan-bran 97.3 0.00055 1.2E-08 71.7 7.5 65 22-89 115-193 (758)
19 cd04642 CBS_pair_29 The CBS do 97.3 0.0005 1.1E-08 54.3 5.6 50 165-215 1-50 (126)
20 cd05818 CBM20_water_dikinase P 97.3 0.0022 4.8E-08 49.9 9.0 53 21-76 2-61 (92)
21 PRK12313 glycogen branching en 97.2 0.00098 2.1E-08 68.4 8.3 67 22-90 39-112 (633)
22 cd02852 Isoamylase_N_term Isoa 97.2 0.0013 2.8E-08 53.1 7.0 59 23-83 9-75 (119)
23 cd05813 CBM20_genethonin_1 Gen 97.2 0.0017 3.6E-08 50.5 7.1 54 21-76 1-62 (95)
24 PRK14706 glycogen branching en 97.2 0.0012 2.6E-08 68.1 8.0 66 22-90 39-112 (639)
25 cd05809 CBM20_beta_amylase Bet 97.1 0.0043 9.2E-08 48.8 8.9 57 20-76 2-68 (99)
26 PRK14705 glycogen branching en 97.1 0.0011 2.4E-08 72.5 6.8 64 22-87 639-710 (1224)
27 cd05820 CBM20_novamyl Novamyl 97.0 0.0046 1E-07 49.1 8.7 55 20-76 2-70 (103)
28 cd05814 CBM20_Prei4 Prei4, N-t 97.0 0.0024 5.2E-08 52.0 6.9 57 22-78 2-68 (120)
29 PRK05402 glycogen branching en 96.9 0.0023 5E-08 66.7 7.3 68 22-90 132-206 (726)
30 TIGR02402 trehalose_TreZ malto 96.9 0.0025 5.5E-08 64.4 7.1 72 23-102 1-75 (542)
31 cd02853 MTHase_N_term Maltooli 96.7 0.0048 1E-07 46.9 6.2 62 23-90 10-73 (85)
32 cd05811 CBM20_glucoamylase Glu 96.7 0.0084 1.8E-07 47.3 7.7 58 19-76 5-73 (106)
33 cd05467 CBM20 The family 20 ca 96.6 0.011 2.3E-07 45.4 7.3 53 23-76 2-65 (96)
34 cd05817 CBM20_DSP Dual-specifi 96.6 0.01 2.2E-07 46.7 7.2 52 23-76 2-62 (100)
35 cd05816 CBM20_DPE2_repeat2 Dis 96.6 0.01 2.2E-07 46.6 7.1 52 23-76 2-64 (99)
36 COG2524 Predicted transcriptio 96.5 0.0046 9.9E-08 57.3 5.5 52 164-217 179-230 (294)
37 smart00116 CBS Domain in cysta 96.5 0.0088 1.9E-07 37.7 5.3 47 167-214 2-48 (49)
38 PRK05402 glycogen branching en 96.5 0.0042 9.2E-08 64.8 5.7 61 23-86 30-95 (726)
39 cd05807 CBM20_CGTase CGTase, C 96.3 0.032 7E-07 43.8 8.6 57 20-76 2-70 (101)
40 TIGR01515 branching_enzym alph 96.1 0.018 3.8E-07 59.2 8.0 67 22-90 29-103 (613)
41 cd05810 CBM20_alpha_MTH Glucan 96.1 0.028 6.2E-07 44.1 7.4 54 21-76 1-64 (97)
42 PF11806 DUF3327: Domain of un 95.9 0.055 1.2E-06 44.5 8.5 83 21-104 2-114 (122)
43 cd04634 CBS_pair_21 The CBS do 95.7 0.021 4.5E-07 46.5 5.3 49 166-216 2-50 (143)
44 cd04623 CBS_pair_10 The CBS do 95.7 0.02 4.4E-07 43.3 4.7 45 166-212 68-112 (113)
45 cd04641 CBS_pair_28 The CBS do 95.6 0.031 6.8E-07 43.4 5.8 49 166-215 2-50 (120)
46 cd04801 CBS_pair_M50_like This 95.6 0.015 3.2E-07 44.7 3.6 56 156-212 58-113 (114)
47 cd04627 CBS_pair_14 The CBS do 95.5 0.03 6.6E-07 43.7 5.2 51 167-217 3-53 (123)
48 cd04642 CBS_pair_29 The CBS do 95.5 0.023 5.1E-07 44.7 4.6 47 165-212 79-125 (126)
49 cd04592 CBS_pair_EriC_assoc_eu 95.3 0.042 9.1E-07 44.9 5.8 50 166-216 2-51 (133)
50 cd02205 CBS_pair The CBS domai 95.3 0.058 1.3E-06 39.9 6.0 52 166-218 2-53 (113)
51 cd04618 CBS_pair_5 The CBS dom 95.3 0.026 5.7E-07 43.3 4.2 46 167-212 52-97 (98)
52 cd05815 CBM20_DPE2_repeat1 Dis 95.2 0.055 1.2E-06 42.4 5.9 54 23-76 2-65 (101)
53 cd04617 CBS_pair_4 The CBS dom 95.1 0.023 5E-07 44.2 3.5 59 154-212 57-117 (118)
54 cd05806 CBM20_laforin Laforin 95.1 0.26 5.6E-06 40.2 9.6 55 22-76 2-74 (112)
55 cd04586 CBS_pair_BON_assoc Thi 95.1 0.038 8.2E-07 44.0 4.7 54 155-212 81-134 (135)
56 cd04605 CBS_pair_MET2_assoc Th 95.1 0.069 1.5E-06 40.4 5.9 50 165-215 2-51 (110)
57 cd04633 CBS_pair_20 The CBS do 95.0 0.055 1.2E-06 41.7 5.3 48 166-215 2-49 (121)
58 cd04614 CBS_pair_1 The CBS dom 95.0 0.043 9.4E-07 41.6 4.6 45 167-212 51-95 (96)
59 cd04603 CBS_pair_KefB_assoc Th 95.0 0.032 7E-07 43.0 3.9 55 156-213 57-111 (111)
60 cd04600 CBS_pair_HPP_assoc Thi 95.0 0.064 1.4E-06 41.5 5.6 51 164-215 1-51 (124)
61 cd04613 CBS_pair_SpoIVFB_EriC_ 94.9 0.061 1.3E-06 40.7 5.3 48 166-214 2-49 (114)
62 cd04623 CBS_pair_10 The CBS do 94.9 0.12 2.7E-06 38.9 7.0 51 166-217 2-52 (113)
63 cd04633 CBS_pair_20 The CBS do 94.8 0.043 9.3E-07 42.3 4.3 54 155-212 67-120 (121)
64 cd04800 CBS_pair_CAP-ED_DUF294 94.8 0.037 8.1E-07 42.0 3.8 53 156-212 58-110 (111)
65 cd04585 CBS_pair_ACT_assoc2 Th 94.8 0.063 1.4E-06 41.0 5.1 48 166-215 2-49 (122)
66 cd04588 CBS_pair_CAP-ED_DUF294 94.8 0.079 1.7E-06 40.1 5.6 48 166-215 2-49 (110)
67 cd04632 CBS_pair_19 The CBS do 94.7 0.084 1.8E-06 41.4 5.8 49 166-215 2-50 (128)
68 cd04609 CBS_pair_PALP_assoc2 T 94.7 0.084 1.8E-06 39.6 5.6 49 165-215 1-49 (110)
69 TIGR02104 pulA_typeI pullulana 94.7 0.091 2E-06 53.8 7.3 66 22-90 20-95 (605)
70 PF03423 CBM_25: Carbohydrate 94.6 0.053 1.2E-06 41.9 4.3 61 22-82 3-76 (87)
71 cd04614 CBS_pair_1 The CBS dom 94.6 0.068 1.5E-06 40.5 4.8 48 166-214 2-49 (96)
72 PLN02316 synthase/transferase 94.6 0.12 2.6E-06 56.2 8.2 76 2-79 137-222 (1036)
73 cd04590 CBS_pair_CorC_HlyC_ass 94.5 0.12 2.6E-06 39.2 6.1 50 166-215 2-51 (111)
74 cd04595 CBS_pair_DHH_polyA_Pol 94.5 0.1 2.2E-06 39.6 5.6 48 165-214 2-49 (110)
75 cd04643 CBS_pair_30 The CBS do 94.5 0.1 2.3E-06 39.7 5.7 48 166-214 2-49 (116)
76 cd04630 CBS_pair_17 The CBS do 94.5 0.18 3.9E-06 38.7 7.0 51 166-216 2-52 (114)
77 PRK10439 enterobactin/ferric e 94.5 0.22 4.8E-06 48.8 9.2 86 18-104 36-163 (411)
78 cd04599 CBS_pair_GGDEF_assoc2 94.5 0.078 1.7E-06 39.7 4.8 45 166-212 2-46 (105)
79 cd04635 CBS_pair_22 The CBS do 94.5 0.074 1.6E-06 41.0 4.8 53 157-212 69-121 (122)
80 cd04612 CBS_pair_SpoIVFB_EriC_ 94.4 0.081 1.8E-06 39.9 4.9 46 166-212 65-110 (111)
81 cd04802 CBS_pair_3 The CBS dom 94.4 0.1 2.2E-06 39.6 5.5 48 166-215 2-49 (112)
82 cd04803 CBS_pair_15 The CBS do 94.4 0.1 2.2E-06 40.2 5.4 50 166-216 2-51 (122)
83 cd04627 CBS_pair_14 The CBS do 94.3 0.09 2E-06 41.0 5.1 46 164-210 75-120 (123)
84 cd04604 CBS_pair_KpsF_GutQ_ass 94.3 0.073 1.6E-06 40.4 4.4 46 166-212 68-113 (114)
85 cd04617 CBS_pair_4 The CBS dom 94.3 0.14 2.9E-06 39.8 6.0 49 166-215 2-50 (118)
86 cd04586 CBS_pair_BON_assoc Thi 94.3 0.11 2.4E-06 41.2 5.6 50 164-214 1-50 (135)
87 cd04589 CBS_pair_CAP-ED_DUF294 94.2 0.13 2.8E-06 39.1 5.7 47 166-214 2-48 (111)
88 cd04585 CBS_pair_ACT_assoc2 Th 94.2 0.1 2.2E-06 39.9 5.1 55 155-212 67-121 (122)
89 cd04619 CBS_pair_6 The CBS dom 94.2 0.15 3.2E-06 39.3 6.0 50 166-216 2-51 (114)
90 PRK15094 magnesium/cobalt effl 94.1 0.086 1.9E-06 49.3 5.3 63 152-214 64-126 (292)
91 cd04587 CBS_pair_CAP-ED_DUF294 94.1 0.08 1.7E-06 40.2 4.3 54 156-212 59-112 (113)
92 cd04630 CBS_pair_17 The CBS do 94.1 0.083 1.8E-06 40.5 4.4 45 166-212 69-113 (114)
93 cd04625 CBS_pair_12 The CBS do 94.1 0.1 2.2E-06 39.6 4.8 52 157-212 60-111 (112)
94 cd04590 CBS_pair_CorC_HlyC_ass 94.1 0.082 1.8E-06 40.1 4.2 46 166-212 65-110 (111)
95 cd04595 CBS_pair_DHH_polyA_Pol 94.0 0.087 1.9E-06 40.0 4.3 54 155-212 56-109 (110)
96 cd04800 CBS_pair_CAP-ED_DUF294 94.0 0.14 3.1E-06 38.7 5.5 47 166-214 2-48 (111)
97 cd04605 CBS_pair_MET2_assoc Th 94.0 0.12 2.5E-06 39.2 5.0 47 165-212 63-109 (110)
98 cd04631 CBS_pair_18 The CBS do 94.0 0.14 2.9E-06 39.7 5.4 50 166-215 2-51 (125)
99 cd04601 CBS_pair_IMPDH This cd 93.9 0.097 2.1E-06 39.4 4.4 45 167-212 64-109 (110)
100 cd04612 CBS_pair_SpoIVFB_EriC_ 93.9 0.14 3E-06 38.6 5.2 48 166-215 2-49 (111)
101 cd04611 CBS_pair_PAS_GGDEF_DUF 93.9 0.16 3.4E-06 38.3 5.5 48 166-215 2-49 (111)
102 cd04606 CBS_pair_Mg_transporte 93.9 0.12 2.5E-06 39.4 4.8 48 166-214 62-109 (109)
103 cd04619 CBS_pair_6 The CBS dom 93.9 0.091 2E-06 40.5 4.2 46 166-212 68-113 (114)
104 cd04639 CBS_pair_26 The CBS do 93.8 0.16 3.5E-06 38.4 5.5 50 166-216 2-51 (111)
105 cd04599 CBS_pair_GGDEF_assoc2 93.8 0.11 2.4E-06 38.8 4.5 44 166-211 60-103 (105)
106 cd04622 CBS_pair_9 The CBS dom 93.8 0.11 2.5E-06 39.3 4.6 46 166-212 67-112 (113)
107 cd04626 CBS_pair_13 The CBS do 93.7 0.11 2.4E-06 39.4 4.4 53 156-212 58-110 (111)
108 cd04629 CBS_pair_16 The CBS do 93.7 0.11 2.4E-06 39.4 4.4 45 166-212 69-113 (114)
109 cd04637 CBS_pair_24 The CBS do 93.7 0.17 3.8E-06 39.0 5.6 49 166-216 2-50 (122)
110 cd04624 CBS_pair_11 The CBS do 93.7 0.2 4.4E-06 37.9 5.8 50 166-216 2-51 (112)
111 cd04615 CBS_pair_2 The CBS dom 93.7 0.13 2.9E-06 39.0 4.8 46 166-212 67-112 (113)
112 TIGR03520 GldE gliding motilit 93.7 0.12 2.7E-06 50.4 5.7 62 152-213 188-249 (408)
113 cd04596 CBS_pair_DRTGG_assoc T 93.6 0.16 3.4E-06 38.6 5.1 54 156-212 54-107 (108)
114 cd04636 CBS_pair_23 The CBS do 93.6 0.12 2.7E-06 40.8 4.6 53 156-212 79-131 (132)
115 cd04607 CBS_pair_NTP_transfera 93.6 0.15 3.3E-06 38.9 5.0 46 165-211 66-111 (113)
116 cd04593 CBS_pair_EriC_assoc_ba 93.5 0.15 3.2E-06 39.1 4.8 48 165-212 66-114 (115)
117 cd04615 CBS_pair_2 The CBS dom 93.5 0.2 4.3E-06 38.0 5.4 47 167-214 3-49 (113)
118 cd04608 CBS_pair_PALP_assoc Th 93.4 0.23 5E-06 39.4 5.9 50 166-216 3-52 (124)
119 cd04640 CBS_pair_27 The CBS do 93.4 0.18 3.8E-06 39.7 5.2 46 166-212 2-47 (126)
120 cd04587 CBS_pair_CAP-ED_DUF294 93.4 0.22 4.7E-06 37.7 5.5 46 165-212 1-46 (113)
121 cd04640 CBS_pair_27 The CBS do 93.4 0.092 2E-06 41.3 3.5 40 173-212 86-125 (126)
122 cd04603 CBS_pair_KefB_assoc Th 93.3 0.23 4.9E-06 38.2 5.5 48 166-214 2-49 (111)
123 cd04641 CBS_pair_28 The CBS do 93.3 0.16 3.5E-06 39.3 4.8 46 166-212 74-119 (120)
124 cd04620 CBS_pair_7 The CBS dom 93.2 0.12 2.7E-06 39.4 4.0 46 166-212 67-114 (115)
125 PLN02960 alpha-amylase 93.1 0.11 2.4E-06 55.5 4.6 53 23-77 131-198 (897)
126 cd04622 CBS_pair_9 The CBS dom 93.1 0.21 4.5E-06 37.8 5.0 44 166-211 2-45 (113)
127 cd04634 CBS_pair_21 The CBS do 93.1 0.15 3.4E-06 41.3 4.5 52 157-212 91-142 (143)
128 cd04613 CBS_pair_SpoIVFB_EriC_ 93.0 0.18 3.8E-06 38.1 4.5 48 165-212 66-113 (114)
129 cd04803 CBS_pair_15 The CBS do 92.9 0.22 4.7E-06 38.4 4.9 47 165-212 75-121 (122)
130 PLN02950 4-alpha-glucanotransf 92.8 0.9 2E-05 49.1 10.9 68 17-86 149-232 (909)
131 PLN02950 4-alpha-glucanotransf 92.7 0.91 2E-05 49.0 10.8 61 16-76 4-74 (909)
132 cd04584 CBS_pair_ACT_assoc Thi 92.7 0.21 4.6E-06 38.3 4.7 45 166-212 76-120 (121)
133 cd04624 CBS_pair_11 The CBS do 92.7 0.22 4.7E-06 37.8 4.6 46 166-212 66-111 (112)
134 cd04582 CBS_pair_ABC_OpuCA_ass 92.7 0.29 6.3E-06 36.7 5.3 48 166-214 2-49 (106)
135 cd04639 CBS_pair_26 The CBS do 92.7 0.2 4.3E-06 37.9 4.4 46 166-212 65-110 (111)
136 cd04588 CBS_pair_CAP-ED_DUF294 92.7 0.24 5.1E-06 37.4 4.8 47 165-212 63-109 (110)
137 cd04600 CBS_pair_HPP_assoc Thi 92.6 0.21 4.6E-06 38.5 4.6 46 166-212 78-123 (124)
138 cd04597 CBS_pair_DRTGG_assoc2 92.6 0.2 4.4E-06 39.3 4.4 45 166-211 67-111 (113)
139 cd04620 CBS_pair_7 The CBS dom 92.5 0.33 7.1E-06 37.0 5.5 48 166-215 2-50 (115)
140 cd04593 CBS_pair_EriC_assoc_ba 92.5 0.31 6.7E-06 37.3 5.3 48 167-215 3-50 (115)
141 cd04632 CBS_pair_19 The CBS do 92.5 0.24 5.2E-06 38.7 4.8 55 156-212 72-127 (128)
142 cd04607 CBS_pair_NTP_transfera 92.4 0.38 8.2E-06 36.7 5.6 49 166-215 3-51 (113)
143 TIGR01302 IMP_dehydrog inosine 92.3 0.91 2E-05 45.0 9.7 48 165-212 88-137 (450)
144 cd04801 CBS_pair_M50_like This 92.3 0.28 6E-06 37.5 4.9 49 166-215 2-51 (114)
145 cd04584 CBS_pair_ACT_assoc Thi 92.2 0.37 7.9E-06 36.9 5.4 49 166-215 2-50 (121)
146 cd04631 CBS_pair_18 The CBS do 92.2 0.28 6.1E-06 37.9 4.8 46 166-212 79-124 (125)
147 cd04610 CBS_pair_ParBc_assoc T 92.1 0.34 7.4E-06 36.2 5.1 46 166-212 61-106 (107)
148 PLN02316 synthase/transferase 92.0 0.76 1.7E-05 50.2 9.2 59 21-79 329-399 (1036)
149 cd04626 CBS_pair_13 The CBS do 92.0 0.42 9E-06 36.2 5.4 49 166-215 2-50 (111)
150 cd04594 CBS_pair_EriC_assoc_ar 91.9 0.26 5.5E-06 37.3 4.1 45 166-212 59-103 (104)
151 cd04591 CBS_pair_EriC_assoc_eu 91.9 0.26 5.7E-06 37.8 4.2 45 166-212 60-104 (105)
152 COG0517 FOG: CBS domain [Gener 91.8 0.27 5.8E-06 37.4 4.2 46 166-211 71-117 (117)
153 cd04636 CBS_pair_23 The CBS do 91.8 0.41 8.8E-06 37.8 5.3 50 166-216 2-51 (132)
154 cd04637 CBS_pair_24 The CBS do 91.7 0.38 8.2E-06 37.1 5.0 46 166-212 76-121 (122)
155 TIGR02100 glgX_debranch glycog 91.7 0.39 8.5E-06 50.2 6.5 55 22-80 15-75 (688)
156 cd02205 CBS_pair The CBS domai 91.6 0.38 8.2E-06 35.4 4.7 46 166-212 67-112 (113)
157 cd04582 CBS_pair_ABC_OpuCA_ass 91.6 0.38 8.2E-06 36.0 4.8 45 167-212 61-105 (106)
158 cd04583 CBS_pair_ABC_OpuCA_ass 91.5 0.55 1.2E-05 35.1 5.6 48 166-214 3-50 (109)
159 cd04591 CBS_pair_EriC_assoc_eu 91.4 0.65 1.4E-05 35.6 6.0 51 166-216 3-55 (105)
160 cd04594 CBS_pair_EriC_assoc_ar 91.4 0.43 9.2E-06 36.1 4.9 45 166-212 2-46 (104)
161 cd04635 CBS_pair_22 The CBS do 91.3 0.41 9E-06 36.8 4.8 47 166-213 2-48 (122)
162 cd04621 CBS_pair_8 The CBS dom 91.3 0.46 1E-05 38.3 5.3 48 167-215 3-50 (135)
163 cd04638 CBS_pair_25 The CBS do 91.3 0.38 8.2E-06 36.2 4.5 46 165-212 60-105 (106)
164 cd04629 CBS_pair_16 The CBS do 91.3 0.53 1.1E-05 35.6 5.4 49 166-215 2-50 (114)
165 cd04602 CBS_pair_IMPDH_2 This 91.2 0.37 8.1E-06 36.9 4.4 46 166-212 68-113 (114)
166 COG3448 CBS-domain-containing 91.1 0.49 1.1E-05 45.1 5.8 68 142-212 232-299 (382)
167 cd04621 CBS_pair_8 The CBS dom 91.0 0.42 9.1E-06 38.5 4.8 45 166-212 90-134 (135)
168 cd04604 CBS_pair_KpsF_GutQ_ass 91.0 0.45 9.9E-06 35.9 4.8 50 166-216 3-52 (114)
169 cd04583 CBS_pair_ABC_OpuCA_ass 91.0 0.5 1.1E-05 35.3 4.9 53 157-212 56-108 (109)
170 cd04598 CBS_pair_GGDEF_assoc T 90.9 0.43 9.3E-06 36.5 4.5 47 167-215 3-50 (119)
171 cd04589 CBS_pair_CAP-ED_DUF294 90.9 0.44 9.5E-06 36.1 4.5 45 166-212 66-110 (111)
172 cd04611 CBS_pair_PAS_GGDEF_DUF 90.8 0.67 1.5E-05 34.8 5.5 54 156-212 57-110 (111)
173 cd04638 CBS_pair_25 The CBS do 90.7 0.64 1.4E-05 34.9 5.3 46 166-212 2-47 (106)
174 cd04610 CBS_pair_ParBc_assoc T 90.6 0.63 1.4E-05 34.8 5.2 46 165-212 2-47 (107)
175 TIGR02102 pullulan_Gpos pullul 90.6 0.61 1.3E-05 51.3 6.8 66 23-90 329-409 (1111)
176 cd04802 CBS_pair_3 The CBS dom 90.4 0.51 1.1E-05 35.7 4.5 45 166-212 67-111 (112)
177 TIGR01137 cysta_beta cystathio 89.9 0.78 1.7E-05 44.8 6.4 65 148-215 328-392 (454)
178 cd04596 CBS_pair_DRTGG_assoc T 89.8 0.75 1.6E-05 34.8 5.0 46 166-212 3-48 (108)
179 PRK03705 glycogen debranching 89.6 0.67 1.5E-05 48.3 5.9 54 22-79 20-77 (658)
180 cd04643 CBS_pair_30 The CBS do 89.4 0.59 1.3E-05 35.5 4.1 44 166-212 72-115 (116)
181 PRK10892 D-arabinose 5-phospha 89.2 0.67 1.5E-05 43.2 5.2 53 156-212 270-322 (326)
182 cd04602 CBS_pair_IMPDH_2 This 89.1 0.82 1.8E-05 35.0 4.8 47 166-212 3-51 (114)
183 PRK15094 magnesium/cobalt effl 89.1 0.55 1.2E-05 43.9 4.5 50 166-216 141-190 (292)
184 cd04601 CBS_pair_IMPDH This cd 89.1 0.64 1.4E-05 34.8 4.1 45 166-211 3-47 (110)
185 cd04625 CBS_pair_12 The CBS do 88.7 1.2 2.6E-05 33.6 5.4 47 167-215 3-49 (112)
186 PRK10892 D-arabinose 5-phospha 88.5 0.91 2E-05 42.4 5.5 58 157-215 204-261 (326)
187 PRK11573 hypothetical protein; 87.8 1.3 2.9E-05 43.4 6.4 63 152-214 184-246 (413)
188 COG0517 FOG: CBS domain [Gener 87.5 1.6 3.5E-05 33.0 5.5 53 165-219 7-59 (117)
189 TIGR02103 pullul_strch alpha-1 87.4 2.2 4.9E-05 46.0 8.3 67 22-90 136-216 (898)
190 PLN02274 inosine-5'-monophosph 87.0 1.1 2.5E-05 45.1 5.5 60 157-217 165-224 (505)
191 TIGR01303 IMP_DH_rel_1 IMP deh 86.5 1.3 2.9E-05 44.3 5.7 51 165-216 154-204 (475)
192 cd04606 CBS_pair_Mg_transporte 86.4 0.85 1.8E-05 34.5 3.4 42 170-212 2-48 (109)
193 PRK07107 inosine 5-monophospha 86.2 1 2.2E-05 45.5 4.7 58 156-214 162-219 (502)
194 cd04598 CBS_pair_GGDEF_assoc T 85.8 1.5 3.4E-05 33.3 4.6 55 155-212 61-118 (119)
195 PRK14869 putative manganese-de 85.8 1.6 3.4E-05 44.0 5.8 60 155-217 68-127 (546)
196 PRK05567 inosine 5'-monophosph 84.0 1.7 3.6E-05 43.5 5.0 51 165-216 156-206 (486)
197 PRK07807 inosine 5-monophospha 83.8 2.1 4.6E-05 43.0 5.7 51 165-216 156-206 (479)
198 PRK01862 putative voltage-gate 83.8 2.2 4.8E-05 43.3 5.9 51 166-216 521-572 (574)
199 TIGR01302 IMP_dehydrog inosine 83.8 1.4 3E-05 43.7 4.3 51 165-216 152-202 (450)
200 cd02857 CD_pullulan_degrading_ 83.7 4.3 9.3E-05 31.6 6.4 56 21-76 18-79 (116)
201 PRK11543 gutQ D-arabinose 5-ph 82.0 2.9 6.2E-05 38.8 5.5 46 166-212 272-317 (321)
202 PLN03244 alpha-amylase; Provis 81.6 1.7 3.7E-05 46.4 4.2 55 21-77 132-201 (872)
203 TIGR00400 mgtE Mg2+ transporte 81.6 3.1 6.7E-05 41.1 5.8 51 166-217 204-254 (449)
204 PRK11543 gutQ D-arabinose 5-ph 81.2 3.2 6.9E-05 38.5 5.5 48 167-215 209-256 (321)
205 KOG1764 5'-AMP-activated prote 81.0 2.3 4.9E-05 41.5 4.5 67 149-217 221-288 (381)
206 PRK01862 putative voltage-gate 80.5 2.9 6.4E-05 42.4 5.4 63 150-215 442-504 (574)
207 PRK14869 putative manganese-de 80.2 3.6 7.9E-05 41.4 5.9 63 151-215 242-304 (546)
208 TIGR00393 kpsF KpsF/GutQ famil 79.2 3 6.5E-05 37.5 4.5 48 167-215 166-213 (268)
209 PTZ00314 inosine-5'-monophosph 78.2 2.4 5.3E-05 42.7 3.9 60 157-217 161-220 (495)
210 KOG0470 1,4-alpha-glucan branc 78.0 1.7 3.7E-05 45.6 2.8 40 23-64 115-157 (757)
211 PRK14510 putative bifunctional 77.6 6.5 0.00014 44.0 7.3 56 21-80 23-84 (1221)
212 PRK07807 inosine 5-monophospha 76.3 6.5 0.00014 39.5 6.3 58 151-211 85-142 (479)
213 TIGR03520 GldE gliding motilit 75.6 5.2 0.00011 39.2 5.3 49 166-215 263-311 (408)
214 cd04609 CBS_pair_PALP_assoc2 T 75.1 5.8 0.00013 29.4 4.4 52 156-212 58-109 (110)
215 PRK05567 inosine 5'-monophosph 74.2 5.1 0.00011 40.1 4.9 46 165-211 95-140 (486)
216 PF01357 Pollen_allerg_1: Poll 71.7 16 0.00035 27.7 6.2 61 17-82 10-76 (82)
217 COG1253 TlyC Hemolysins and re 71.7 8.8 0.00019 37.7 5.9 66 152-217 203-268 (429)
218 PF02903 Alpha-amylase_N: Alph 70.9 6 0.00013 31.7 3.8 58 19-76 21-87 (120)
219 COG2524 Predicted transcriptio 70.0 8.7 0.00019 36.1 5.1 50 165-215 242-291 (294)
220 PLN02877 alpha-amylase/limit d 68.9 18 0.0004 39.5 7.9 64 22-90 223-303 (970)
221 PLN02274 inosine-5'-monophosph 68.5 13 0.00029 37.6 6.5 50 163-212 106-157 (505)
222 COG1253 TlyC Hemolysins and re 68.2 13 0.00028 36.6 6.2 50 166-216 280-329 (429)
223 cd04608 CBS_pair_PALP_assoc Th 67.3 3.7 8.1E-05 32.3 1.9 48 165-213 67-123 (124)
224 PTZ00314 inosine-5'-monophosph 67.2 8.3 0.00018 38.9 4.7 47 165-211 104-152 (495)
225 TIGR01137 cysta_beta cystathio 63.2 11 0.00024 36.7 4.7 53 156-214 401-453 (454)
226 COG3794 PetE Plastocyanin [Ene 62.5 26 0.00057 29.2 6.1 50 19-73 60-111 (128)
227 COG2239 MgtE Mg/Co/Ni transpor 59.5 17 0.00036 36.5 5.2 51 167-218 206-256 (451)
228 TIGR01303 IMP_DH_rel_1 IMP deh 56.7 21 0.00045 35.9 5.4 56 152-211 85-140 (475)
229 COG3448 CBS-domain-containing 54.9 27 0.00058 33.7 5.4 65 151-218 311-375 (382)
230 TIGR01186 proV glycine betaine 53.2 40 0.00086 32.6 6.5 49 166-216 311-359 (363)
231 PRK07107 inosine 5-monophospha 50.1 22 0.00048 36.0 4.4 44 168-211 108-153 (502)
232 PRK10785 maltodextrin glucosid 48.0 57 0.0012 33.6 7.0 61 19-79 19-87 (598)
233 smart00526 H15 Domain in histo 47.5 30 0.00065 24.8 3.6 37 144-189 25-61 (66)
234 KOG1263 Multicopper oxidases [ 47.5 15 0.00031 37.9 2.6 47 43-90 85-136 (563)
235 TIGR00400 mgtE Mg2+ transporte 43.3 66 0.0014 31.8 6.5 63 147-212 121-190 (449)
236 TIGR03503 conserved hypothetic 41.5 63 0.0014 31.7 5.8 41 35-78 152-194 (374)
237 TIGR02375 pseudoazurin pseudoa 41.2 1.1E+02 0.0024 24.9 6.4 25 12-36 14-38 (116)
238 PLN00115 pollen allergen group 38.8 1.2E+02 0.0025 25.1 6.2 47 31-81 47-96 (118)
239 KOG0045 Cytosolic Ca2+-depende 37.6 30 0.00066 36.0 3.2 26 66-91 115-143 (612)
240 COG2905 Predicted signal-trans 36.6 60 0.0013 33.7 5.0 57 155-215 214-270 (610)
241 COG4535 CorC Putative Mg2+ and 35.5 47 0.001 31.1 3.7 67 138-213 59-125 (293)
242 TIGR00393 kpsF KpsF/GutQ famil 35.5 65 0.0014 28.7 4.7 48 156-206 221-268 (268)
243 COG4109 Predicted transcriptio 34.2 93 0.002 30.8 5.6 51 169-220 261-311 (432)
244 COG3620 Predicted transcriptio 33.9 1E+02 0.0022 27.3 5.3 60 154-217 64-123 (187)
245 PRK11573 hypothetical protein; 33.5 75 0.0016 31.2 5.1 48 167-215 264-311 (413)
246 PRK10239 2-amino-4-hydroxy-6-h 33.2 30 0.00065 29.8 2.0 69 167-245 5-82 (159)
247 COG4536 CorB Putative Mg2+ and 32.5 52 0.0011 32.6 3.7 66 152-217 197-262 (423)
248 PF14681 UPRTase: Uracil phosp 32.4 75 0.0016 28.1 4.5 56 158-219 112-174 (207)
249 PF13473 Cupredoxin_1: Cupredo 32.0 29 0.00062 26.9 1.6 16 57-72 74-90 (104)
250 COG1926 Predicted phosphoribos 31.9 1.2E+02 0.0026 27.7 5.6 74 143-219 105-195 (220)
251 PF14347 DUF4399: Domain of un 30.6 1E+02 0.0022 23.9 4.4 32 56-88 50-81 (87)
252 PRK14092 2-amino-4-hydroxy-6-h 30.1 60 0.0013 28.0 3.4 73 162-245 5-87 (163)
253 TIGR03102 halo_cynanin halocya 29.2 2.6E+02 0.0056 22.7 6.8 48 20-73 49-99 (115)
254 COG1343 CRISPR-associated prot 29.1 1.4E+02 0.0029 23.5 4.9 63 167-238 4-68 (89)
255 PF11896 DUF3416: Domain of un 27.6 54 0.0012 29.0 2.7 40 41-83 55-99 (187)
256 TIGR01004 PulS_OutS lipoprotei 24.0 95 0.0021 26.0 3.3 50 137-200 37-86 (128)
257 cd00483 HPPK 7,8-dihydro-6-hyd 22.0 1.2E+02 0.0025 24.9 3.5 69 167-245 2-79 (128)
258 PF11232 Med25: Mediator compl 21.8 1.1E+02 0.0025 26.3 3.5 56 163-218 72-146 (152)
259 PRK10070 glycine betaine trans 21.7 1.7E+02 0.0037 28.7 5.2 49 167-217 347-395 (400)
260 PF07495 Y_Y_Y: Y_Y_Y domain; 21.7 81 0.0018 21.8 2.2 25 60-84 30-58 (66)
261 PRK11534 DNA-binding transcrip 21.1 1.4E+02 0.003 26.0 4.1 40 172-214 43-82 (224)
262 smart00592 BRK domain in trans 20.9 85 0.0018 21.5 2.1 19 146-164 26-44 (45)
263 smart00230 CysPc Calpain-like 20.5 1.2E+02 0.0025 28.7 3.6 25 65-89 98-125 (318)
264 cd04592 CBS_pair_EriC_assoc_eu 20.4 1.4E+02 0.003 24.0 3.6 33 165-197 86-118 (133)
265 COG3620 Predicted transcriptio 20.2 1.2E+02 0.0025 26.9 3.2 59 152-216 127-185 (187)
No 1
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=99.92 E-value=4.5e-25 Score=168.01 Aligned_cols=79 Identities=46% Similarity=0.944 Sum_probs=73.9
Q ss_pred ceEEEEEecCCCceEEEEeccCCCCCCCCCCCCCCCCCeEEEEEecCCceEEEEEEEcCeeecCCCCCeeeCCCCccccE
Q 024154 20 LVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCV 99 (271)
Q Consensus 20 ~vpVtF~w~~~ak~V~V~GsF~nW~~~ipM~k~~~~~g~f~~~~~LppG~yeYKFiVDG~W~~Dp~~P~v~d~~G~~NNv 99 (271)
.++|+|+|.++|++|+|+|||++|++..||.+.. .+ |++++.||||.|+|||+|||+|.+||++|++.|++|+.||+
T Consensus 1 ~~~v~f~~~~~a~~V~v~G~F~~W~~~~pm~~~~--~~-~~~~~~L~~g~y~YkF~Vdg~w~~d~~~~~~~d~~G~~NN~ 77 (79)
T cd02859 1 MVPTTFVWPGGGKEVYVTGSFDNWKKKIPLEKSG--KG-FSATLRLPPGKYQYKFIVDGEWRHSPDLPTETDDEGNVNNV 77 (79)
T ss_pred CeEEEEEEcCCCcEEEEEEEcCCCCccccceECC--CC-cEEEEEcCCCCEEEEEEECCEEEeCCCCCccCCCCCcEeee
Confidence 4799999999999999999999999878999875 34 99999999999999999999999999999999999999999
Q ss_pred EE
Q 024154 100 YI 101 (271)
Q Consensus 100 l~ 101 (271)
|+
T Consensus 78 i~ 79 (79)
T cd02859 78 ID 79 (79)
T ss_pred EC
Confidence 84
No 2
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=99.80 E-value=6.2e-20 Score=176.41 Aligned_cols=120 Identities=35% Similarity=0.534 Sum_probs=105.4
Q ss_pred HhHHHHHHhhhhccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHHhccCC-
Q 024154 143 LSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNG- 221 (271)
Q Consensus 143 ~~~~~~~~fl~~~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~~~~~~- 221 (271)
.....+.+||+.|+||+++|++.|+++||+.++|++||++|++++++++|+||+.+++|+||+|++|||.+|+++|+.+
T Consensus 54 ~~~~~~~~~~~~~~~~~~~p~~~~l~~~d~~~~v~~a~~~l~~~~~~~~p~~~~~~~~~~g~~~~~d~i~~~~~~~~~~~ 133 (381)
T KOG1764|consen 54 NAVDTLSKFMKSHTCYDLLPTSSKLVVFDTKLSVKKAFNALVQNGVRAAPLWDSKKQQFVGMLTITDFITVLLRYYKSKS 133 (381)
T ss_pred chhHHHHHHHhccCcccccCCcceeEEeeCCCcHHHHHHHHHhhceeeeccccCccceeEEEEEHHHHHHHHHHhhccCC
Confidence 3556899999999999999999999999999999999999999999999999999999999999999999999999863
Q ss_pred CCcchhhhhccchhHHHHHHHhhhhcccCCCCCCCCCCCceEecCCCCCC
Q 024154 222 SNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQVSASSVSF 271 (271)
Q Consensus 222 ~~~~~~~le~~~I~~~re~~~~~~~~~~~~~~~~~~~~plv~i~p~~~l~ 271 (271)
.....+.++++.+..||+....+.. ...++|++++|+.++|
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~i~p~~s~l 174 (381)
T KOG1764|consen 134 SLDNIEVLEDSQLSKRREVECLLKE---------TLKPPFVSISPESSLL 174 (381)
T ss_pred cHHHHhhhhhhhccccchhhhhhcc---------ccCCCceeecCcHHHH
Confidence 3346899999999999998555431 2456669999998764
No 3
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.79 E-value=4.7e-19 Score=135.15 Aligned_cols=78 Identities=37% Similarity=0.752 Sum_probs=69.7
Q ss_pred eEEEEEecCC-CceEEEEeccCCCCCCCCCCCCCCCCCeEEEEEecCCceEEEEEEEcCeee-cCCCCCe-eeCCCCccc
Q 024154 21 VPVRFIWPNG-GRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWR-HDENQPH-VSGNYGVVN 97 (271)
Q Consensus 21 vpVtF~w~~~-ak~V~V~GsF~nW~~~ipM~k~~~~~g~f~~~~~LppG~yeYKFiVDG~W~-~Dp~~P~-v~d~~G~~N 97 (271)
++|+|+|.++ +++|+|+|+|++|+ ..+|++.+ +|.|++++.|++|.|+|||+|||.|. +||.++. ..|+.|+.|
T Consensus 2 ~~vtf~~~ap~a~~V~v~G~fn~W~-~~~m~~~~--~G~w~~~~~l~~G~y~Ykf~vdg~~~~~DP~~~~~~~~~~g~~n 78 (82)
T cd02861 2 VPVVFAYRGPEADSVYLAGSFNNWN-AIPMEREG--DGLWVVTVELRPGRYEYKFVVDGEWVIVDPNAAAYVDDGFGGKN 78 (82)
T ss_pred ccEEEEEECCCCCEEEEEeECCCCC-cccCEECC--CCcEEEEEeCCCCcEEEEEEECCEEeeCCCCCCceecCCCCccc
Confidence 5799999875 69999999999998 47999864 69999999999999999999999998 9999986 668899999
Q ss_pred cEEE
Q 024154 98 CVYI 101 (271)
Q Consensus 98 Nvl~ 101 (271)
|+|.
T Consensus 79 ~v~~ 82 (82)
T cd02861 79 AVFV 82 (82)
T ss_pred eEcC
Confidence 9873
No 4
>KOG1616 consensus Protein involved in Snf1 protein kinase complex assembly [Carbohydrate transport and metabolism]
Probab=99.67 E-value=1.5e-16 Score=148.11 Aligned_cols=89 Identities=36% Similarity=0.690 Sum_probs=80.8
Q ss_pred CCCcceEEEEEecCCCceEEEEeccCCCCCCCCCCCCCCCCCeEEEEEecCCceEEEEEEEcCeeecCCCCCeeeCCCCc
Q 024154 16 VGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGV 95 (271)
Q Consensus 16 ~~~~~vpVtF~w~~~ak~V~V~GsF~nW~~~ipM~k~~~~~g~f~~~~~LppG~yeYKFiVDG~W~~Dp~~P~v~d~~G~ 95 (271)
......+++|+|..+++.|+|+|+|.||+..++|.+..+..|.|.+++.|++|.|+|||+|||+|++|++.|++.|..|+
T Consensus 75 ~~~~~~pvvi~W~~gg~~v~v~gS~~nWk~~~~l~~~~~~~~~f~~~~dL~~g~~~~kf~vdge~~~s~~~pta~d~~Gn 154 (289)
T KOG1616|consen 75 DREQGRPTVIRWSQGGKEVYVDGSFGNWKTKIPLVRSGKNVGGFSTILDLPPGEHEYKFIVDGEWRHDPDLPTAEDSLGN 154 (289)
T ss_pred ccccCCceEEEecCCCceEEEecccccccccccceecCCCcccceeeEecCCceEEEEEecCCceecCCCCcccccccCC
Confidence 34457999999999999999999999999889998875444559999999999999999999999999999999999999
Q ss_pred cccEEEecC
Q 024154 96 VNCVYIAVP 104 (271)
Q Consensus 96 ~NNvl~V~~ 104 (271)
.||++.|..
T Consensus 155 ~~N~i~v~~ 163 (289)
T KOG1616|consen 155 LNNILEVQD 163 (289)
T ss_pred cccceEecC
Confidence 999999933
No 5
>cd02858 Esterase_N_term Esterase N-terminal domain. Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.27 E-value=2.5e-11 Score=93.39 Aligned_cols=76 Identities=26% Similarity=0.377 Sum_probs=63.0
Q ss_pred EEEEEe-cCCCceEEEEeccCCCCCCCCCCCCCCCCCeEEEEEe-cCCceEEEEEEEcCeeecCCCCCeeeCCCCccccE
Q 024154 22 PVRFIW-PNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCV 99 (271)
Q Consensus 22 pVtF~w-~~~ak~V~V~GsF~nW~~~ipM~k~~~~~g~f~~~~~-LppG~yeYKFiVDG~W~~Dp~~P~v~d~~G~~NNv 99 (271)
.++|+. ...|++|.|.|+|++|.. .+|++.+ +|+|++++. |.+|.|+|+|+|||.++.||.++...-..+...|.
T Consensus 7 ~v~F~vwAP~A~~V~L~~~~~~~~~-~~m~~~~--~G~W~~~v~~l~~g~Y~Y~~~vdg~~~~DP~s~~~~~~~~~~~~~ 83 (85)
T cd02858 7 TVTFRLFAPKANEVQVRGSWGGAGS-HPMTKDE--AGVWSVTTGPLAPGIYTYSFLVDGVRVIDPSNPTTKPGRQVDTSG 83 (85)
T ss_pred cEEEEEECCCCCEEEEEeecCCCcc-EeCeECC--CeEEEEEECCCCCcEEEEEEEECCeEecCCCCCceeeccccccee
Confidence 578876 457999999999998864 7999875 799999984 88899999999999999999999877555555444
Q ss_pred E
Q 024154 100 Y 100 (271)
Q Consensus 100 l 100 (271)
+
T Consensus 84 ~ 84 (85)
T cd02858 84 V 84 (85)
T ss_pred e
Confidence 3
No 6
>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.84 E-value=1.4e-08 Score=74.90 Aligned_cols=70 Identities=33% Similarity=0.527 Sum_probs=59.0
Q ss_pred eEEEEEecC-CCceEEEEeccCCCCCCCCCCCCCCCCCeEEEEEecCC-ceEEEEEEEcCeeecCCCCCeeeCC
Q 024154 21 VPVRFIWPN-GGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPP-GHHQYKFYVDGEWRHDENQPHVSGN 92 (271)
Q Consensus 21 vpVtF~w~~-~ak~V~V~GsF~nW~~~ipM~k~~~~~g~f~~~~~Lpp-G~yeYKFiVDG~W~~Dp~~P~v~d~ 92 (271)
..++|++.. ++++|.|.++|++|....+|.+.+ .|.|++.+.+.. +.|.|+|+|||.|.+++.++...+.
T Consensus 4 ~~v~f~v~ap~a~~v~l~~~~~~~~~~~~~~~~~--~g~w~~~v~~~~~~~~~Y~~~v~~~~~~~~~~~~~~~~ 75 (83)
T cd02688 4 KGVTFTVRGPKAQRVSLAGSFNGDTQLIPMTKVE--DGYWEVELPLPSPGKYQYKYVLDGGKGPDEGEPKADEG 75 (83)
T ss_pred ccEEEEEECCCCCEEEEEEEECCCCCcccCEECC--CceEEEEEcCCCCCCeEEEEEEeCCCCCCCCChhhhcC
Confidence 467888865 689999999999976678998865 699999999887 9999999999999999888655543
No 7
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=98.48 E-value=8e-07 Score=70.56 Aligned_cols=67 Identities=25% Similarity=0.446 Sum_probs=50.7
Q ss_pred EEEEEe-cCCCceEEEEeccCCCCCC-CCCCCCCCCCCeEEEEEec--------CCc-eEEEEEEE-cCee--ecCCCCC
Q 024154 22 PVRFIW-PNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICRL--------PPG-HHQYKFYV-DGEW--RHDENQP 87 (271)
Q Consensus 22 pVtF~w-~~~ak~V~V~GsF~nW~~~-ipM~k~~~~~g~f~~~~~L--------ppG-~yeYKFiV-DG~W--~~Dp~~P 87 (271)
.++|+. ...|++|+|+|+||+|+.. .+|.|.+ .|+|+++++. +.| .|.|++.. ||+| +.||...
T Consensus 6 g~~FrvwAP~A~~V~l~GdFn~W~~~~~~m~k~~--~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~G~~~~~~DPyA~ 83 (99)
T cd02854 6 GVTYREWAPNAEEVYLIGDFNNWDRNAHPLKKDE--FGVWEITIPPNEDGSPAIPHGSKIKVRMVTPSGEWIDRIPAWIK 83 (99)
T ss_pred eEEEEEECCCCCEEEEEccCCCCCCcCcccEECC--CCEEEEEECCcccccccCCCCCEEEEEEEeCCCCEEEEcCccee
Confidence 466764 5689999999999999863 6899875 7999999874 344 56666666 7876 6787766
Q ss_pred eee
Q 024154 88 HVS 90 (271)
Q Consensus 88 ~v~ 90 (271)
.+.
T Consensus 84 ~~~ 86 (99)
T cd02854 84 YVT 86 (99)
T ss_pred EEE
Confidence 544
No 8
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=98.33 E-value=3.1e-07 Score=69.38 Aligned_cols=57 Identities=30% Similarity=0.596 Sum_probs=44.5
Q ss_pred eEEEEEe-cCCCceEEEEeccCC-CCCC-CCCC-CCCCCCCeEEEEEe--cCCceEEEEEEEcCe
Q 024154 21 VPVRFIW-PNGGRRVSLSGSFTR-WSEP-MPMS-PSEGCPAVFQIICR--LPPGHHQYKFYVDGE 79 (271)
Q Consensus 21 vpVtF~w-~~~ak~V~V~GsF~n-W~~~-ipM~-k~~~~~g~f~~~~~--LppG~yeYKFiVDG~ 79 (271)
..++|+. ...|++|.|++.|++ |... ++|. +.+ .|+|++++. +++|.++|+|+|||.
T Consensus 11 ~~~~F~vwaP~A~~V~l~~~~~~~~~~~~~~m~~~~~--~G~w~~~~~~~~~~g~~~Y~y~i~~~ 73 (85)
T PF02922_consen 11 GGVTFRVWAPNAKSVELVLYFNGSWPAEEYPMTRKDD--DGVWEVTVPGDLPPGGYYYKYRIDGD 73 (85)
T ss_dssp TEEEEEEE-TTESEEEEEEETTTSSEEEEEEEEEECT--TTEEEEEEEGCGTTTT-EEEEEEEET
T ss_pred CEEEEEEECCCCCEEEEEEEeeecCCCceEEeeecCC--CCEEEEEEcCCcCCCCEEEEEEEEeC
Confidence 3567765 568999999999999 8653 6998 444 799999998 888888888888764
No 9
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.06 E-value=1.1e-05 Score=55.85 Aligned_cols=49 Identities=20% Similarity=0.461 Sum_probs=46.6
Q ss_pred CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR 215 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~ 215 (271)
+++.++.+.++++|+..|.++++..+|+.|.. ++++|++|..|+++.|.
T Consensus 8 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~-~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 8 PPITVSPDDSLEEALEIMRKNGISRLPVVDED-GKLVGIISRSDLLKALL 56 (57)
T ss_dssp SSEEEETTSBHHHHHHHHHHHTSSEEEEESTT-SBEEEEEEHHHHHHHHH
T ss_pred CCEEEcCcCcHHHHHHHHHHcCCcEEEEEecC-CEEEEEEEHHHHHhhhh
Confidence 78999999999999999999999999999988 99999999999999774
No 10
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.92 E-value=3.6e-05 Score=60.30 Aligned_cols=66 Identities=20% Similarity=0.238 Sum_probs=49.9
Q ss_pred EEEE-EecCCCceEEEEeccCCCC-----CCCCCCCCCCCCCeEEEEEe-cCCceEEEEEEEcCe-----eecCCCCCee
Q 024154 22 PVRF-IWPNGGRRVSLSGSFTRWS-----EPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGE-----WRHDENQPHV 89 (271)
Q Consensus 22 pVtF-~w~~~ak~V~V~GsF~nW~-----~~ipM~k~~~~~g~f~~~~~-LppG~yeYKFiVDG~-----W~~Dp~~P~v 89 (271)
-++| .|...|++|.|+. |++|. ..++|.+.+ .|+|++.+. +.+|. .|+|.|+|. ...||....+
T Consensus 9 ~~~F~vwAP~A~~V~L~l-~~~~~~~~~~~~~~m~~~~--~gvw~~~v~~~~~g~-~Y~y~i~~~~~~~~~~~DPyA~~~ 84 (100)
T cd02860 9 KTTFRLWAPTAQSVKLLL-YDKDDQDKVLETVQMKRGE--NGVWSVTLDGDLEGY-YYLYEVKVYKGETNEVVDPYAKAL 84 (100)
T ss_pred CEEEEEECCCCcEEEEEE-EcCCCCCCcceeEeeecCC--CCEEEEEeCCccCCc-EEEEEEEEeceEEEEEcCcccEeE
Confidence 3677 4667899999998 88886 346898854 799999987 45555 488888775 7888888776
Q ss_pred eC
Q 024154 90 SG 91 (271)
Q Consensus 90 ~d 91 (271)
..
T Consensus 85 ~~ 86 (100)
T cd02860 85 SA 86 (100)
T ss_pred ee
Confidence 63
No 11
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....
Probab=97.75 E-value=6.8e-05 Score=58.42 Aligned_cols=56 Identities=29% Similarity=0.561 Sum_probs=46.6
Q ss_pred eEEEEEecC---CCceEEEEeccC---CCCC--CCCCCCCCC--CCCeEEEEEecCCc-eEEEEEEE
Q 024154 21 VPVRFIWPN---GGRRVSLSGSFT---RWSE--PMPMSPSEG--CPAVFQIICRLPPG-HHQYKFYV 76 (271)
Q Consensus 21 vpVtF~w~~---~ak~V~V~GsF~---nW~~--~ipM~k~~~--~~g~f~~~~~LppG-~yeYKFiV 76 (271)
+.|+|.... .++.|+|+||.. +|++ .++|...++ ....|++++.||.+ .++|||++
T Consensus 2 v~V~F~v~~~~~~ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~~~~eYKy~i 68 (96)
T PF00686_consen 2 VSVTFRVNYQTQPGESVYIVGSCPELGNWDPKKAVPLQWNEGTENYPIWSATVDLPAGTPFEYKYVI 68 (96)
T ss_dssp EEEEEEESE---TTEEEEEEESSGGGTTTSGGGSBESEBESSSSTTTSEEEEEEEETTSEEEEEEEE
T ss_pred EEEEEEEEeECCCCCEEEEEECcHHhCCCChHhccccccccCCCCCCeEEEEEECcCCCEEEEEEEE
Confidence 678999964 589999999998 7987 478887532 35799999999997 69999999
No 12
>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo
Probab=97.71 E-value=0.00014 Score=56.19 Aligned_cols=54 Identities=28% Similarity=0.482 Sum_probs=43.7
Q ss_pred eEEEEEecC---CCceEEEEec---cCCCCCC--CCCCCCCCCCCeEEEEEecCCc-eEEEEEEE
Q 024154 21 VPVRFIWPN---GGRRVSLSGS---FTRWSEP--MPMSPSEGCPAVFQIICRLPPG-HHQYKFYV 76 (271)
Q Consensus 21 vpVtF~w~~---~ak~V~V~Gs---F~nW~~~--ipM~k~~~~~g~f~~~~~LppG-~yeYKFiV 76 (271)
++|+|..++ .+++|+|+|+ +.+|++. ++|...+ .+.|++++.||++ .++|||++
T Consensus 1 v~v~F~v~~~t~~ge~l~v~G~~~~lG~W~~~~a~~l~~~~--~~~W~~~v~l~~~~~~eYKy~~ 63 (95)
T cd05808 1 VAVTFNVTATTVWGQNVYVVGNVPELGNWSPANAVALSAAT--YPVWSGTVDLPAGTAIEYKYIK 63 (95)
T ss_pred CeEEEEEEEECCCCCEEEEEeCcHHhCCCChhhCccCCCCC--CCCEEEEEEeCCCCeEEEEEEE
Confidence 467888764 4789999995 7799864 5888754 5789999999986 69999997
No 13
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=97.71 E-value=0.00023 Score=55.42 Aligned_cols=68 Identities=28% Similarity=0.506 Sum_probs=45.6
Q ss_pred EEEE-ecCCCceEEEEeccCCCCC-CCCCCCCCCCCCeEEEEEe-cCCc-eEEEEEEEc-Ce--eecCCCCCeeeC
Q 024154 23 VRFI-WPNGGRRVSLSGSFTRWSE-PMPMSPSEGCPAVFQIICR-LPPG-HHQYKFYVD-GE--WRHDENQPHVSG 91 (271)
Q Consensus 23 VtF~-w~~~ak~V~V~GsF~nW~~-~ipM~k~~~~~g~f~~~~~-LppG-~yeYKFiVD-G~--W~~Dp~~P~v~d 91 (271)
++|+ |..+|++|.|+++|++|.. ..+|.+.+. .|.|.+.+. +++| .|.|++..+ |. .+.||....++.
T Consensus 23 ~~frv~aP~A~~V~l~~~~~~~~~~~~~m~~~~~-~G~w~~~v~~~~~~~~Y~~~v~~~~g~~~~~~DPYa~~~~~ 97 (106)
T cd02855 23 VRFAVWAPNARRVSVVGDFNGWDGRRHPMRRRGD-SGVWELFIPGLGEGELYKYEILGADGHLPLKADPYAFYSEL 97 (106)
T ss_pred EEEEEECCCCCEEEEEEECCCCCCcceecEECCC-CCEEEEEECCCCCCCEEEEEEECCCCCEEEeeCCCceeeEe
Confidence 5565 4568999999999999964 358987542 789998886 5666 444444443 32 356666654443
No 14
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.64 E-value=0.00018 Score=56.76 Aligned_cols=53 Identities=21% Similarity=0.425 Sum_probs=40.7
Q ss_pred EEE-EecCCCceEEEEeccCCCC--CCCCCCCCCCCCCeEEEEEe-cCCceEEEEEEEcCe
Q 024154 23 VRF-IWPNGGRRVSLSGSFTRWS--EPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGE 79 (271)
Q Consensus 23 VtF-~w~~~ak~V~V~GsF~nW~--~~ipM~k~~~~~g~f~~~~~-LppG~yeYKFiVDG~ 79 (271)
++| .|...|++|.|+. |+++. ..++|++.+ .|+|.+.+. +.+|. .|+|.|||.
T Consensus 11 ~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~~--~GvW~~~v~~~~~g~-~Y~y~i~g~ 67 (103)
T cd02856 11 CNFAVHSENATRIELCL-FDEDGSETRLPLTEEY--GGVWHGFLPGIKAGQ-RYGFRVHGP 67 (103)
T ss_pred eEEEEECCCCCEEEEEE-EeCCCCEEEEEccccc--CCEEEEEECCCCCCC-EEEEEECCc
Confidence 567 5677899999998 66664 246898765 799999985 56665 799999993
No 15
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.63 E-value=0.0001 Score=56.87 Aligned_cols=51 Identities=51% Similarity=0.891 Sum_probs=47.4
Q ss_pred CCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154 165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR 215 (271)
Q Consensus 165 ~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~ 215 (271)
.++++++.+.++++|+..|.++++.+.|++|.+.++++||+|..|++.++.
T Consensus 1 ~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~ 51 (98)
T cd04618 1 SKLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR 51 (98)
T ss_pred CeEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhee
Confidence 478999999999999999999999999999987789999999999998765
No 16
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=97.52 E-value=0.00018 Score=73.74 Aligned_cols=161 Identities=21% Similarity=0.264 Sum_probs=92.6
Q ss_pred eEEEEE-ecCCCceEEEEeccCCCCCC-CCCCCCCCCCCeEEEEEe-cCCceEEEEEEEcCe-----eecCCCCCeeeCC
Q 024154 21 VPVRFI-WPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGE-----WRHDENQPHVSGN 92 (271)
Q Consensus 21 vpVtF~-w~~~ak~V~V~GsF~nW~~~-ipM~k~~~~~g~f~~~~~-LppG~yeYKFiVDG~-----W~~Dp~~P~v~d~ 92 (271)
..++|+ |..+|+.|.|+|+||+|... .+|.... ..|+|++++. +++| +.|||.+++. ++.||..-.....
T Consensus 36 ~~~~F~vWAP~a~~V~vvgdfn~w~~~~~~~~~~~-~~G~we~~vp~~~~G-~~Yky~l~~~~g~~~~~~DP~a~~~~~~ 113 (628)
T COG0296 36 SGVRFRVWAPNARRVSLVGDFNDWDGRRMPMRDRK-ESGIWELFVPGAPPG-TRYKYELIDPSGQLRLKADPYARRQEVG 113 (628)
T ss_pred CceEEEEECCCCCeEEEEeecCCccceecccccCC-CCceEEEeccCCCCC-CeEEEEEeCCCCceeeccCchhhccCCC
Confidence 456675 67899999999999999873 4555433 3799999998 9999 9999999653 3666665444433
Q ss_pred CCccccEEEecCCCCCCCC----CCCC-CCCCCcccc-ccccCCCCCCC---CcHHHHHHhHHHHHHhhhhccccccCCC
Q 024154 93 YGVVNCVYIAVPQPDMVPN----TISP-ETSGNMEVD-DVVMRPEGFAQ---YSEADLQLSRDRISSFLSTHTVYELLPD 163 (271)
Q Consensus 93 ~G~~NNvl~V~~~~~~~p~----~~~~-~~~~~m~~~-~~~~~~e~~pr---~s~~~~~~~~~~~~~fl~~~tcYd~lP~ 163 (271)
-++..-|. ..+++.=. -... ..+.+ ++. =+.|. .++.+ ..-.|+.+.+-+|-.-| --||=+|||.
T Consensus 114 p~~aS~v~---~~~~y~W~d~~~~~~~~~~~~e-~~vIYElHv-Gs~~~~~~~~~~e~a~~llpYl~el-G~T~IELMPv 187 (628)
T COG0296 114 PHTASQVV---DLPDYEWQDERWDRAWRGRFWE-PIVIYELHV-GSFTPDRFLGYFELAIELLPYLKEL-GITHIELMPV 187 (628)
T ss_pred CCCcceec---CCCCcccccccccccccCCCCC-CceEEEEEe-eeccCCCCcCHHHHHHHHhHHHHHh-CCCEEEEccc
Confidence 22222122 22222111 0000 01111 111 11221 11111 34556666666666666 6799999998
Q ss_pred CCC---------eEE-------EcccchHHHHHHHHHHcCCC
Q 024154 164 SGK---------VTA-------LDVNLAVKQAFHVLYEQGLP 189 (271)
Q Consensus 164 s~k---------~vv-------~D~~l~v~~Af~al~~~g~~ 189 (271)
+.- .+- +-+-=-.|+-+.+++++||.
T Consensus 188 ~e~p~~~sWGYq~~g~yAp~sryGtPedfk~fVD~aH~~GIg 229 (628)
T COG0296 188 AEHPGDRSWGYQGTGYYAPTSRYGTPEDFKALVDAAHQAGIG 229 (628)
T ss_pred ccCCCCCCCCCCcceeccccccCCCHHHHHHHHHHHHHcCCE
Confidence 743 111 11222367777888888884
No 17
>PRK12568 glycogen branching enzyme; Provisional
Probab=97.33 E-value=0.00053 Score=71.54 Aligned_cols=66 Identities=26% Similarity=0.579 Sum_probs=50.0
Q ss_pred EEEEE-ecCCCceEEEEeccCCCCCC-CCCCCCCCCCCeEEEEEe-cCCceEEEEEEE---cCee--ecCCCCCeee
Q 024154 22 PVRFI-WPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICR-LPPGHHQYKFYV---DGEW--RHDENQPHVS 90 (271)
Q Consensus 22 pVtF~-w~~~ak~V~V~GsF~nW~~~-ipM~k~~~~~g~f~~~~~-LppG~yeYKFiV---DG~W--~~Dp~~P~v~ 90 (271)
-|+|+ |...|++|+|+|+||+|... .+|.+.+ .|+|++.++ +.+| ..|||.| ||.+ +.||....+.
T Consensus 139 Gv~FaVWAPnA~~VsVvGDFN~Wdg~~~pM~~~~--~GVWelfipg~~~G-~~YKYeI~~~~G~~~~k~DPYA~~~e 212 (730)
T PRK12568 139 GVRFAVWAPHAQRVAVVGDFNGWDVRRHPMRQRI--GGFWELFLPRVEAG-ARYKYAITAADGRVLLKADPVARQTE 212 (730)
T ss_pred cEEEEEECCCCCEEEEEEecCCCCccceecccCC--CCEEEEEECCCCCC-CEEEEEEEcCCCeEeecCCCcceEee
Confidence 46785 56689999999999999864 6898753 799999986 6666 3567776 7865 4677766544
No 18
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=97.32 E-value=0.00055 Score=71.66 Aligned_cols=65 Identities=23% Similarity=0.418 Sum_probs=47.3
Q ss_pred EEEE-EecCCCceEEEEeccCCCCCC-CCCCCCCCCCCeEEEEEec-------CCceEEEEEEEc---Ce--eecCCCCC
Q 024154 22 PVRF-IWPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICRL-------PPGHHQYKFYVD---GE--WRHDENQP 87 (271)
Q Consensus 22 pVtF-~w~~~ak~V~V~GsF~nW~~~-ipM~k~~~~~g~f~~~~~L-------ppG~yeYKFiVD---G~--W~~Dp~~P 87 (271)
.++| .|..+|++|+|+|+||+|... .+|++.+ .|+|++.++- +.| ..|||.|. |. .+.||-..
T Consensus 115 g~~FrvWAP~A~~V~LvGdFN~W~~~~~~M~~~~--~GvWe~~ip~~~g~~~~~~G-~~Yky~i~~~~g~~~~r~dpya~ 191 (758)
T PLN02447 115 GITYREWAPGAKAAALIGDFNNWNPNAHWMTKNE--FGVWEIFLPDADGSPAIPHG-SRVKIRMETPDGRWVDRIPAWIK 191 (758)
T ss_pred CEEEEEECCCCCEEEEEEecCCCCCCccCceeCC--CCEEEEEECCccccccCCCC-CEEEEEEEeCCCcEEeecCchHh
Confidence 3455 467789999999999999864 6999865 7999999863 334 36777773 54 46777654
Q ss_pred ee
Q 024154 88 HV 89 (271)
Q Consensus 88 ~v 89 (271)
.+
T Consensus 192 ~~ 193 (758)
T PLN02447 192 YA 193 (758)
T ss_pred ee
Confidence 43
No 19
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.30 E-value=0.0005 Score=54.32 Aligned_cols=50 Identities=28% Similarity=0.481 Sum_probs=45.9
Q ss_pred CCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154 165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR 215 (271)
Q Consensus 165 ~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~ 215 (271)
+++++++.+.++++|+..|.++++..+|++|.. ++++||+|..|+++.+.
T Consensus 1 ~~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~-~~~~Giv~~~dl~~~~~ 50 (126)
T cd04642 1 SKVVSIDSDERVLDAFKLMRKNNISGLPVVDEK-GKLIGNISASDLKGLLL 50 (126)
T ss_pred CCeEEECCCccHHHHHHHHHHhCCCcccEECCC-CcEEEEEEHHHhhhhhc
Confidence 468899999999999999999999999999976 89999999999998764
No 20
>cd05818 CBM20_water_dikinase Phosphoglucan water dikinase (also known as alpha-glucan water dikinase), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in the chloroplast-encoded phosphoglucan water dikinase, one of two enzymes involved in the phosphorylation of plant starches. In addition to the CBM20 domain, phosphoglucan water dikinase contains a C-terminal pyruvate binding domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=97.29 E-value=0.0022 Score=49.90 Aligned_cols=53 Identities=25% Similarity=0.389 Sum_probs=44.2
Q ss_pred eEEEEEecC---CCceEEEEeccC---CCCCCCCCCCCCCCCCeEEEEEecCCc-eEEEEEEE
Q 024154 21 VPVRFIWPN---GGRRVSLSGSFT---RWSEPMPMSPSEGCPAVFQIICRLPPG-HHQYKFYV 76 (271)
Q Consensus 21 vpVtF~w~~---~ak~V~V~GsF~---nW~~~ipM~k~~~~~g~f~~~~~LppG-~yeYKFiV 76 (271)
+.++|+.++ -|+.++|+|+-. +|++..+|... .+.|++.+.+|++ ..+|||++
T Consensus 2 ~~v~F~~~~~~~~Gq~l~v~G~~~~LG~W~~~~~l~~~---~~~W~~~~~l~~~~~ieyKy~~ 61 (92)
T cd05818 2 VKLQVRLDHQVKFGEHVAILGSTKELGSWKKKVPMNWT---ENGWVCDLELDGGELVEYKFVI 61 (92)
T ss_pred EEEEEEEEEEcCCCCEEEEEeChHHHCCCCCCCccccC---CCCEEEEEEeCCCCcEEEEEEE
Confidence 578888876 488999999885 89987788764 3569999999987 69999999
No 21
>PRK12313 glycogen branching enzyme; Provisional
Probab=97.24 E-value=0.00098 Score=68.36 Aligned_cols=67 Identities=21% Similarity=0.282 Sum_probs=48.9
Q ss_pred EEEEEe-cCCCceEEEEeccCCCCCC-CCCCCCCCCCCeEEEEEe-cCCc-eEEEEEEE-cCee--ecCCCCCeee
Q 024154 22 PVRFIW-PNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICR-LPPG-HHQYKFYV-DGEW--RHDENQPHVS 90 (271)
Q Consensus 22 pVtF~w-~~~ak~V~V~GsF~nW~~~-ipM~k~~~~~g~f~~~~~-LppG-~yeYKFiV-DG~W--~~Dp~~P~v~ 90 (271)
.|+|+. ...|++|+|+|+|++|... .+|.+.. .|+|.+++. +.+| .|.|++.. +|.| +.||....+.
T Consensus 39 gv~Frv~AP~A~~V~v~gdfn~w~~~~~~m~~~~--~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~DPya~~~~ 112 (633)
T PRK12313 39 GTYFRVWAPNAQAVSVVGDFNDWRGNAHPLVRRE--SGVWEGFIPGAKEGQLYKYHISRQDGYQVEKIDPFAFYFE 112 (633)
T ss_pred cEEEEEECCCCCEEEEEEecCCCCcccccccccC--CCEEEEEeCCCCCCCEEEEEEECCCCeEEecCCCceEEEe
Confidence 577865 5579999999999999864 6898864 799999987 4444 57776654 5665 4666655444
No 22
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain. Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.21 E-value=0.0013 Score=53.10 Aligned_cols=59 Identities=25% Similarity=0.518 Sum_probs=43.3
Q ss_pred EEE-EecCCCceEEEEeccCCCC---C--CCCCCCCC-CCCCeEEEEEe-cCCceEEEEEEEcCeeecC
Q 024154 23 VRF-IWPNGGRRVSLSGSFTRWS---E--PMPMSPSE-GCPAVFQIICR-LPPGHHQYKFYVDGEWRHD 83 (271)
Q Consensus 23 VtF-~w~~~ak~V~V~GsF~nW~---~--~ipM~k~~-~~~g~f~~~~~-LppG~yeYKFiVDG~W~~D 83 (271)
++| .|...|++|.|+. |++|. + .++|.+.+ +..|+|++.+. +.+|. .|+|.|+|.|..+
T Consensus 9 ~~F~vwAP~A~~V~L~l-f~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~~~~~g~-~Y~y~v~g~~~p~ 75 (119)
T cd02852 9 VNFSVYSSNATAVELLL-FDPGDGDEPALEIELDPSVNRTGDVWHVFVEGLKPGQ-LYGYRVDGPFEPE 75 (119)
T ss_pred EEEEEECCCCCEEEEEE-EeCCCCCCceEEEeCcCcccccCCEEEEEECCCCCCC-EEEEEECCCCCCC
Confidence 667 5677899999999 88875 2 35776543 23589999986 67775 7999999865433
No 23
>cd05813 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=97.17 E-value=0.0017 Score=50.52 Aligned_cols=54 Identities=22% Similarity=0.448 Sum_probs=43.4
Q ss_pred eEEEEEecC----CCceEEEEeccC---CCCCCCCCCCCCCCCCeEEEEEecCCc-eEEEEEEE
Q 024154 21 VPVRFIWPN----GGRRVSLSGSFT---RWSEPMPMSPSEGCPAVFQIICRLPPG-HHQYKFYV 76 (271)
Q Consensus 21 vpVtF~w~~----~ak~V~V~GsF~---nW~~~ipM~k~~~~~g~f~~~~~LppG-~yeYKFiV 76 (271)
++|+|+..+ +++.++|+|+-. +|+...+|...+ ...|+.++.||++ ..+|||++
T Consensus 1 v~v~F~v~~~t~~~~e~l~v~G~~~~LG~W~~~~~l~~~~--~~~W~~~v~lp~~~~ieYky~~ 62 (95)
T cd05813 1 VNVTFRVHYITHSDAQLVAVTGDHEELGSWHSYIPLQYVK--DGFWSASVSLPVDTHVEWKFVL 62 (95)
T ss_pred CeEEEEEEeeeCCCCeEEEEEcChHHHCCCCccccCcCCC--CCCEEEEEEecCCCcEEEEEEE
Confidence 467888864 457788999875 788878997654 5789999999997 49999998
No 24
>PRK14706 glycogen branching enzyme; Provisional
Probab=97.16 E-value=0.0012 Score=68.05 Aligned_cols=66 Identities=30% Similarity=0.585 Sum_probs=48.9
Q ss_pred EEEEE-ecCCCceEEEEeccCCCCCC-CCCCCCCCCCCeEEEEEec-CCceEEEEEEEcC---ee--ecCCCCCeee
Q 024154 22 PVRFI-WPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICRL-PPGHHQYKFYVDG---EW--RHDENQPHVS 90 (271)
Q Consensus 22 pVtF~-w~~~ak~V~V~GsF~nW~~~-ipM~k~~~~~g~f~~~~~L-ppG~yeYKFiVDG---~W--~~Dp~~P~v~ 90 (271)
-++|+ |...|++|.|+|+||+|... .||.+.+ .|+|++.++. .+| ..|||.|++ .+ +.||....+.
T Consensus 39 Gv~FrvwAP~A~~V~Lvgdfn~w~~~~~pM~~~~--~GvW~~~vpg~~~g-~~Yky~I~~~~g~~~~~~DPYa~~~~ 112 (639)
T PRK14706 39 GVRFAVWAPGAQHVSVVGDFNDWNGFDHPMQRLD--FGFWGAFVPGARPG-QRYKFRVTGAAGQTVDKMDPYGSFFE 112 (639)
T ss_pred cEEEEEECCCCCEEEEEEecCCcccccccccccC--CCEEEEEECCCCCC-CEEEEEEECCCCCEEeccCcceEEEe
Confidence 46675 56689999999999999864 6998865 6999999874 445 468888854 33 6777665544
No 25
>cd05809 CBM20_beta_amylase Beta-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Beta-amylase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 14, which hydrolyzes the alpha-1,4-glucosidic bonds of starch, yielding beta-maltose from the nonreducing end of the substrate. Beta-amylase is found in both plants and microorganisms, however the plant members lack a C-terminal CBM20 domain and are not included in this group. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1
Probab=97.10 E-value=0.0043 Score=48.81 Aligned_cols=57 Identities=23% Similarity=0.410 Sum_probs=42.8
Q ss_pred ceEEEEEecC----CCceEEEEe---ccCCCCCCC-CCCCCC-CCCCeEEEEEecCCc-eEEEEEEE
Q 024154 20 LVPVRFIWPN----GGRRVSLSG---SFTRWSEPM-PMSPSE-GCPAVFQIICRLPPG-HHQYKFYV 76 (271)
Q Consensus 20 ~vpVtF~w~~----~ak~V~V~G---sF~nW~~~i-pM~k~~-~~~g~f~~~~~LppG-~yeYKFiV 76 (271)
.++|+|.... .+++|+|+| ++-+|+... +|.... ...+.|++++.||+| .++|||++
T Consensus 2 ~v~v~f~v~~~~t~~G~~v~v~Gs~~~LG~W~~~~~~~~~~~~~~~~~W~~~~~lp~~~~veyKyv~ 68 (99)
T cd05809 2 PVPQTFVVKNVPTTIGETVYITGSRAELGNWDTKQYPIQLYYNSHSNDWRGTVHLPAGRNIEFKAIK 68 (99)
T ss_pred ceEEEEEEcccccCCCCEEEEEeChHHhCCCChhhhhhccccCCCCCCEEEEEEecCCCcEEEEEEE
Confidence 4899999853 478999999 566998642 343321 124789999999998 59999999
No 26
>PRK14705 glycogen branching enzyme; Provisional
Probab=97.05 E-value=0.0011 Score=72.52 Aligned_cols=64 Identities=25% Similarity=0.557 Sum_probs=47.5
Q ss_pred EEEEE-ecCCCceEEEEeccCCCCCC-CCCCCCCCCCCeEEEEEe-cCCceEEEEEEEc---Cee--ecCCCCC
Q 024154 22 PVRFI-WPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICR-LPPGHHQYKFYVD---GEW--RHDENQP 87 (271)
Q Consensus 22 pVtF~-w~~~ak~V~V~GsF~nW~~~-ipM~k~~~~~g~f~~~~~-LppG~yeYKFiVD---G~W--~~Dp~~P 87 (271)
-|+|+ |..+|++|+|+|+||+|... .+|.+.. ..|+|++.++ +.+|. .|||.|+ |.| +.||...
T Consensus 639 Gv~F~VWAP~A~~V~vvgdFN~w~~~~~~m~~~~-~~GvW~~fipg~~~G~-~Yky~i~~~~g~~~~k~DPyA~ 710 (1224)
T PRK14705 639 GVSFAVWAPNAQAVRVKGDFNGWDGREHSMRSLG-SSGVWELFIPGVVAGA-CYKFEILTKAGQWVEKADPLAF 710 (1224)
T ss_pred eEEEEEECCCCCEEEEEEEecCCCCCcccceECC-CCCEEEEEECCCCCCC-EEEEEEEcCCCcEEecCCcccc
Confidence 45665 56789999999999999864 5898743 3699999886 77885 6888884 444 4566543
No 27
>cd05820 CBM20_novamyl Novamyl (also known as acarviose transferase, ATase, maltogenic alpha-amylase, glucan 1,4-alpha-maltohydrolase, and AcbD), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Novamyl has a five-domain structure similar to that of cyclodextrin glucanotransferase (CGTase). Novamyl has a substrate-binding surface with an open groove which can accommodate both cyclodextrins and linear substrates. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific reco
Probab=97.05 E-value=0.0046 Score=49.06 Aligned_cols=55 Identities=27% Similarity=0.510 Sum_probs=43.7
Q ss_pred ceEEEEEecC-----CCceEEEEeccC---CCCCCC-----CCCCCCCCCCeEEEEEecCCc-eEEEEEEE
Q 024154 20 LVPVRFIWPN-----GGRRVSLSGSFT---RWSEPM-----PMSPSEGCPAVFQIICRLPPG-HHQYKFYV 76 (271)
Q Consensus 20 ~vpVtF~w~~-----~ak~V~V~GsF~---nW~~~i-----pM~k~~~~~g~f~~~~~LppG-~yeYKFiV 76 (271)
.+||+|+... -+++++|+|+-. +|+... +|.... ...|++++.||+| ..+|||++
T Consensus 2 ~~~v~f~~~~~~~t~~Ge~l~vvGs~~~LG~W~~~~~~a~~~l~~~~--~~~W~~~~~lp~~~~veyK~v~ 70 (103)
T cd05820 2 QIPVIFTVQNTPETAPGEFLYLTGSVPELGNWSTSTDQAVGPLLCPN--WPDWFVVASVPAGTYIEFKFLK 70 (103)
T ss_pred cccEEEEEeCCcCcCCCCEEEEEECcHHhCCCChhccccccccccCC--CCCEEEEEEcCCCCcEEEEEEE
Confidence 3899999973 378999999876 898632 665432 5689999999998 69999999
No 28
>cd05814 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 contains a C-terminal glycerophosphoryl diester phosphodiesterase (GDPD) domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=97.01 E-value=0.0024 Score=51.97 Aligned_cols=57 Identities=25% Similarity=0.501 Sum_probs=44.6
Q ss_pred EEEEEecC----CCceEEEEec---cCCCCC--CCCCCCCCCCCCeEEEEEecCCc-eEEEEEEEcC
Q 024154 22 PVRFIWPN----GGRRVSLSGS---FTRWSE--PMPMSPSEGCPAVFQIICRLPPG-HHQYKFYVDG 78 (271)
Q Consensus 22 pVtF~w~~----~ak~V~V~Gs---F~nW~~--~ipM~k~~~~~g~f~~~~~LppG-~yeYKFiVDG 78 (271)
.|+|...+ .++.|+|+|+ +.+|++ ..+|.+.......|++++.||++ .++|||++..
T Consensus 2 ~v~F~v~~~~~~~ge~v~v~G~~~~LG~W~~~~a~~l~~~~~~~~~W~~~v~lp~~~~veYkY~~~~ 68 (120)
T cd05814 2 RVTFRVFASELAPGEVVAVVGSLPVLGNWQPEKAVPLEKEDDDCNLWKASIELPRGVDFQYRYFVAV 68 (120)
T ss_pred eEEEEEeeccCCCCCEEEEEeChHHhCCCCHHhCeeCccCCCcCCccEEEEEECCCCeEEEEEEEEE
Confidence 46777765 4789999999 789985 35888752125789999999987 7999999943
No 29
>PRK05402 glycogen branching enzyme; Provisional
Probab=96.89 E-value=0.0023 Score=66.75 Aligned_cols=68 Identities=26% Similarity=0.421 Sum_probs=48.3
Q ss_pred EEEEEec-CCCceEEEEeccCCCCCC-CCCCCCCCCCCeEEEEEe-cCCc-eEEEEEEEc-Cee--ecCCCCCeee
Q 024154 22 PVRFIWP-NGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICR-LPPG-HHQYKFYVD-GEW--RHDENQPHVS 90 (271)
Q Consensus 22 pVtF~w~-~~ak~V~V~GsF~nW~~~-ipM~k~~~~~g~f~~~~~-LppG-~yeYKFiVD-G~W--~~Dp~~P~v~ 90 (271)
.|+|+.- ..|++|.|+|+||+|... .+|.+.. ..|+|++.+. +++| .|.|++..+ |.| +.||..-.+.
T Consensus 132 gv~FrvwAP~A~~V~l~gdfn~w~~~~~~m~~~~-~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~DPYa~~~~ 206 (726)
T PRK05402 132 GVRFAVWAPNARRVSVVGDFNGWDGRRHPMRLRG-ESGVWELFIPGLGEGELYKFEILTADGELLLKADPYAFAAE 206 (726)
T ss_pred cEEEEEECCCCCEEEEEEEcCCCCCccccceEcC-CCCEEEEEeCCCCCCCEEEEEEeCCCCcEeecCCCceEEEe
Confidence 4777765 579999999999999763 6898862 2799999886 6666 677777664 444 4555544433
No 30
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=96.87 E-value=0.0025 Score=64.39 Aligned_cols=72 Identities=19% Similarity=0.243 Sum_probs=53.4
Q ss_pred EEEE-ecCCCceEEEEeccCCCCCCCCCCCCCCCCCeEEEEEe-cCCceEEEEEEEcC-eeecCCCCCeeeCCCCccccE
Q 024154 23 VRFI-WPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDG-EWRHDENQPHVSGNYGVVNCV 99 (271)
Q Consensus 23 VtF~-w~~~ak~V~V~GsF~nW~~~ipM~k~~~~~g~f~~~~~-LppG~yeYKFiVDG-~W~~Dp~~P~v~d~~G~~NNv 99 (271)
|+|+ |...|++|.|++. + ...+|.+.+ .|+|++++. +.+| +.|+|.||| ..+.||.......+. +..++
T Consensus 1 v~FrlwAP~A~~V~L~l~---~-~~~~m~k~~--~GvW~~~v~~~~~G-~~Y~y~v~g~~~v~DPya~~~~~~~-~~~S~ 72 (542)
T TIGR02402 1 VRFRLWAPTAASVKLRLN---G-ALHAMQRLG--DGWFEITVPPVGPG-DRYGYVLDDGTPVPDPASRRQPDGV-HGPSQ 72 (542)
T ss_pred CEEEEECCCCCEEEEEeC---C-CEEeCeECC--CCEEEEEECCCCCC-CEEEEEEeeeEEecCccccccccCC-CCCeE
Confidence 4664 6778999999973 3 347999875 699999997 7778 789999999 788999988765321 22355
Q ss_pred EEe
Q 024154 100 YIA 102 (271)
Q Consensus 100 l~V 102 (271)
+..
T Consensus 73 V~d 75 (542)
T TIGR02402 73 VVD 75 (542)
T ss_pred Eec
Confidence 544
No 31
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=96.74 E-value=0.0048 Score=46.92 Aligned_cols=62 Identities=23% Similarity=0.359 Sum_probs=45.2
Q ss_pred EEEE-ecCCCceEEEEeccCCCCCCCCCCCCCCCCCeEEEEEecCCceEEEEEEEc-CeeecCCCCCeee
Q 024154 23 VRFI-WPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVD-GEWRHDENQPHVS 90 (271)
Q Consensus 23 VtF~-w~~~ak~V~V~GsF~nW~~~ipM~k~~~~~g~f~~~~~LppG~yeYKFiVD-G~W~~Dp~~P~v~ 90 (271)
++|+ |...|++|.|+... |. ..+|.+.+ .|+|++++..-+|. .|+|.|+ +..+.||......
T Consensus 10 ~~F~vwAP~A~~V~l~l~~--~~-~~~m~~~~--~G~W~~~v~~~~g~-~Y~y~v~~~~~~~DP~a~~~~ 73 (85)
T cd02853 10 TRFRLWAPDAKRVTLRLDD--GE-EIPMQRDG--DGWFEAEVPGAAGT-RYRYRLDDGTPVPDPASRFQP 73 (85)
T ss_pred EEEEEeCCCCCEEEEEecC--CC-cccCccCC--CcEEEEEeCCCCCC-eEEEEECCCcCCCCCccccCC
Confidence 6676 56689999999743 53 47898765 79999998633665 4777776 5778888877644
No 32
>cd05811 CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-glucosidase), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Glucoamylases are inverting, exo-acting starch hydrolases that hydrolyze starch and related polysaccharides by releasing the nonreducing end glucose. They are mainly active on alpha-1,4-glycosidic bonds but also have some activity towards 1,6-glycosidic bonds occurring in natural oligosaccharides. The ability of glucoamylases to cleave 1-6-glycosidic binds is called "debranching activity" and is of importance in industrial applications, where complete degradation of starch to glucose is needed. Most glucoamylases are multidomain proteins containing an N-terminal catalytic domain, a C-terminal CBM20 domain, and a highly O-glycosylated linker region that connects the two. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also
Probab=96.72 E-value=0.0084 Score=47.33 Aligned_cols=58 Identities=26% Similarity=0.504 Sum_probs=44.4
Q ss_pred cceEEEEEecC---CCceEEEEeccC---CCCC--CCCCCCCC--CCCCeEEEEEecCCc-eEEEEEEE
Q 024154 19 ILVPVRFIWPN---GGRRVSLSGSFT---RWSE--PMPMSPSE--GCPAVFQIICRLPPG-HHQYKFYV 76 (271)
Q Consensus 19 ~~vpVtF~w~~---~ak~V~V~GsF~---nW~~--~ipM~k~~--~~~g~f~~~~~LppG-~yeYKFiV 76 (271)
..++|+|...+ .++.|+|+|+-. +|++ .++|.... .....|+.++.||++ .++|||++
T Consensus 5 ~~v~V~F~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~t~~~~~W~~~v~lp~~~~veYKy~~ 73 (106)
T cd05811 5 TTVAVTFNERVTTSYGENIKIVGSIPQLGNWDTSSAVALSASQYTSSNPLWSVTIPLPAGTSFEYKFIR 73 (106)
T ss_pred CEEEEEEEEeeEcCCCCeEEEEeCcHHHCCCChhhCcccccccCccCCCcEEEEEEeCCCCcEEEEEEE
Confidence 45788998865 478999999875 7986 36786431 124689999999987 59999997
No 33
>cd05467 CBM20 The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=96.60 E-value=0.011 Score=45.41 Aligned_cols=53 Identities=26% Similarity=0.459 Sum_probs=41.2
Q ss_pred EEEEecC---CCceEEEEeccC---CCCC--CCCCCCCCCCCCeEEEEEecCC--c-eEEEEEEE
Q 024154 23 VRFIWPN---GGRRVSLSGSFT---RWSE--PMPMSPSEGCPAVFQIICRLPP--G-HHQYKFYV 76 (271)
Q Consensus 23 VtF~w~~---~ak~V~V~GsF~---nW~~--~ipM~k~~~~~g~f~~~~~Lpp--G-~yeYKFiV 76 (271)
|+|+..+ .++.++|+|+.. +|++ .++|...+ ..+.|++.+.+|+ + .++|||++
T Consensus 2 v~f~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~-~~~~W~~~v~~~~~~~~~~~yKy~~ 65 (96)
T cd05467 2 VRFQVRCTTQFGQSVYVVGSHPELGNWDPAKALRLNTSN-SYPLWTGEIPLPAPEGQVIEYKYVI 65 (96)
T ss_pred EEEEEEEECCCCCEEEEEeCcHHhCCcChhcCccccCCC-CCCcEEEEEEecCCCCCeEEEEEEE
Confidence 4566653 588999999986 7985 36887653 2478999999998 6 69999998
No 34
>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This CBM20 domain is located at the N-terminus of a protein tyrosine phosphatase of unknown function found in slime molds and ciliated protozoans. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=96.57 E-value=0.01 Score=46.72 Aligned_cols=52 Identities=25% Similarity=0.438 Sum_probs=40.0
Q ss_pred EEEEecC---CCceEEEEecc---CCCCCC--CCCCCCCCCCCeEEEEEecCCc-eEEEEEEE
Q 024154 23 VRFIWPN---GGRRVSLSGSF---TRWSEP--MPMSPSEGCPAVFQIICRLPPG-HHQYKFYV 76 (271)
Q Consensus 23 VtF~w~~---~ak~V~V~GsF---~nW~~~--ipM~k~~~~~g~f~~~~~LppG-~yeYKFiV 76 (271)
|+|...+ .|+.+.|+|+- -+|++. ++|...+ ...|++++.||++ .++|||+|
T Consensus 2 v~F~i~~~t~~Ge~l~v~Gs~~~LG~W~~~~a~~m~~~~--~~~W~~~v~lp~~~~veYKY~i 62 (100)
T cd05817 2 VTFKIHYPTQFGEAVYISGNCNQLGNWNPSKAKRMQWNE--GDLWTVDVGIPESVYIEYKYFV 62 (100)
T ss_pred EEEEEEEEcCCCCEEEEEeCcHHHCCCCccccCcccCCC--CCCEEEEEEECCCCcEEEEEEE
Confidence 3454443 57899999995 489864 5787654 5689999999987 69999998
No 35
>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star
Probab=96.56 E-value=0.01 Score=46.58 Aligned_cols=52 Identities=19% Similarity=0.397 Sum_probs=41.4
Q ss_pred EEEEecC----CCceEEEEeccC---CCCC--CCCCCCCCCCCCeEEEEEecCCc--eEEEEEEE
Q 024154 23 VRFIWPN----GGRRVSLSGSFT---RWSE--PMPMSPSEGCPAVFQIICRLPPG--HHQYKFYV 76 (271)
Q Consensus 23 VtF~w~~----~ak~V~V~GsF~---nW~~--~ipM~k~~~~~g~f~~~~~LppG--~yeYKFiV 76 (271)
|+|+... .++.|+|+|+-. +|++ .++|...+ ...|++.+.+|++ .++|||++
T Consensus 2 v~f~v~~~~~~~Ge~v~i~Gs~~~LG~W~~~~a~~l~~~~--~~~W~~~v~~p~~~~~ieYKyvi 64 (99)
T cd05816 2 VQFKILCPYVPKGQSVYVTGSSPELGNWDPQKALKLSDVG--FPIWEADIDISKDSFPFEYKYII 64 (99)
T ss_pred EEEEEEcCccCCCCEEEEEEChHHhCCCCccccccCCCCC--CCcEEEEEEeCCCCccEEEEEEE
Confidence 6777754 478999999864 8986 36888754 5689999999885 59999998
No 36
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=96.51 E-value=0.0046 Score=57.34 Aligned_cols=52 Identities=23% Similarity=0.408 Sum_probs=49.2
Q ss_pred CCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHHh
Q 024154 164 SGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILREL 217 (271)
Q Consensus 164 s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~~ 217 (271)
|.+++.++.+.+++.|-..|+++|++-||+-|-. .++|+||.+|+.+.+...
T Consensus 179 s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~d--k~vGiit~~dI~~aia~g 230 (294)
T COG2524 179 SKKLITVRPDDTLREAAKLFYEKGIRGAPVVDDD--KIVGIITLSDIAKAIANG 230 (294)
T ss_pred cCCceEecCCccHHHHHHHHHHcCccCCceecCC--ceEEEEEHHHHHHHHHcC
Confidence 4789999999999999999999999999999988 999999999999998875
No 37
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=96.48 E-value=0.0088 Score=37.74 Aligned_cols=47 Identities=30% Similarity=0.574 Sum_probs=41.4
Q ss_pred eEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHH
Q 024154 167 VTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILIL 214 (271)
Q Consensus 167 ~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il 214 (271)
.++++-+.+++.+...+.++++..+|+.+.. ++++|+++..|++..|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEE-GRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCC-CeEEEEEEHHHHHHhh
Confidence 3567788889999999999999999999976 7899999999998765
No 38
>PRK05402 glycogen branching enzyme; Provisional
Probab=96.47 E-value=0.0042 Score=64.83 Aligned_cols=61 Identities=11% Similarity=0.041 Sum_probs=43.9
Q ss_pred EEE-EecCCCceEEEEeccCCCCCCCCCCCCCCCCCeEEEEEecCCceEEEEEEE--cCe--eecCCCC
Q 024154 23 VRF-IWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYV--DGE--WRHDENQ 86 (271)
Q Consensus 23 VtF-~w~~~ak~V~V~GsF~nW~~~ipM~k~~~~~g~f~~~~~LppG~yeYKFiV--DG~--W~~Dp~~ 86 (271)
++| +|..+|++|+|+|+||+ ....||.+.+ ..|+|++.+++..|.. |||.| ||+ .+.||..
T Consensus 30 ~~f~vwaP~A~~V~vvgdfn~-~~~~~m~~~~-~~G~w~~~ip~~~g~~-YKy~i~~~g~~~~k~DPya 95 (726)
T PRK05402 30 LVVRALLPGAEEVWVILPGGG-RKLAELERLH-PRGLFAGVLPRKGPFD-YRLRVTWGGGEQLIDDPYR 95 (726)
T ss_pred EEEEEECCCCeEEEEEeecCC-CccccceEcC-CCceEEEEecCCCCCC-eEEEEEeCCceeEeccccc
Confidence 444 56789999999999997 3457999754 3799999998666632 55555 784 4566654
No 39
>cd05807 CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. CGTase, also known as cyclodextrin glycosyltransferase and cyclodextrin glucanotransferase, catalyzes the formation of various cyclodextrins (alpha-1,4-glucans) from starch. CGTase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13 and an IPT domain of unknown function. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific
Probab=96.31 E-value=0.032 Score=43.84 Aligned_cols=57 Identities=23% Similarity=0.314 Sum_probs=42.3
Q ss_pred ceEEEEEec-C---CCceEEEEeccC---CCCCC--CCCC-CC-CCCCCeEEEEEecCCc-eEEEEEEE
Q 024154 20 LVPVRFIWP-N---GGRRVSLSGSFT---RWSEP--MPMS-PS-EGCPAVFQIICRLPPG-HHQYKFYV 76 (271)
Q Consensus 20 ~vpVtF~w~-~---~ak~V~V~GsF~---nW~~~--ipM~-k~-~~~~g~f~~~~~LppG-~yeYKFiV 76 (271)
.++|+|... . .+++|+|+|+-. +|++. +.|. .. ......|++++.||+| .++|||++
T Consensus 2 ~v~v~f~v~~~~t~~Gq~l~v~Gs~~~LG~W~~~~a~~~~~~~~~~~~~~W~~~~~lp~~~~~eyK~~~ 70 (101)
T cd05807 2 QVSVRFVVNNATTQLGENVYLVGNVHELGNWDPSKAIGPFFNQVVYQYPNWYYDVSVPAGTTIEFKFIK 70 (101)
T ss_pred cEEEEEEEeccccCCCCEEEEEECHHHHCCCChHHccccccccCCCcCCcEEEEEEcCCCCcEEEEEEE
Confidence 478999985 2 478999999876 89864 3232 11 1135689999999998 69999999
No 40
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=96.14 E-value=0.018 Score=59.16 Aligned_cols=67 Identities=24% Similarity=0.525 Sum_probs=48.7
Q ss_pred EEEEE-ecCCCceEEEEeccCCCCCC-CCCCCCCCCCCeEEEEEe-cCCceEEEEEEEc---Ce--eecCCCCCeee
Q 024154 22 PVRFI-WPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICR-LPPGHHQYKFYVD---GE--WRHDENQPHVS 90 (271)
Q Consensus 22 pVtF~-w~~~ak~V~V~GsF~nW~~~-ipM~k~~~~~g~f~~~~~-LppG~yeYKFiVD---G~--W~~Dp~~P~v~ 90 (271)
.++|+ |...|++|.|+|+||+|... .+|.+.+ ..|+|++.+. +.+|. .|+|.|+ |. .+.||....+.
T Consensus 29 g~~FrvwAP~A~~V~L~~dfn~w~~~~~~m~~~~-~~Gvw~~~i~~~~~g~-~Y~y~v~~~~g~~~~~~DPYA~~~~ 103 (613)
T TIGR01515 29 GTRFCVWAPNAREVRVAGDFNYWDGREHPMRRRN-DNGIWELFIPGIGEGE-LYKYEIVTNNGEIRLKADPYAFYAE 103 (613)
T ss_pred cEEEEEECCCCCEEEEEEecCCCCCceecceEec-CCCEEEEEeCCCCCCC-EEEEEEECCCCcEEEeCCCCEeeec
Confidence 45665 56689999999999999764 5888753 2689999886 45564 5888874 54 47888766544
No 41
>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Alpha-MTH, also known as maltotetraose-forming exo-amylase or G4-amylase, is an exo-amylase found in bacteria that degrades starch from its non-reducing end. Most alpha-MTHs have, in addition to the C-terminal CBM20 domain, an N-terminal glycosyl hydrolase family 13 catalytic domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=96.12 E-value=0.028 Score=44.15 Aligned_cols=54 Identities=22% Similarity=0.405 Sum_probs=41.7
Q ss_pred eEEEEEec-C---CCceEEEEeccC---CCCCC--CCCCCCCCCCCeEEEEEecCCc-eEEEEEEE
Q 024154 21 VPVRFIWP-N---GGRRVSLSGSFT---RWSEP--MPMSPSEGCPAVFQIICRLPPG-HHQYKFYV 76 (271)
Q Consensus 21 vpVtF~w~-~---~ak~V~V~GsF~---nW~~~--ipM~k~~~~~g~f~~~~~LppG-~yeYKFiV 76 (271)
++|+|.-. . .++.|+|+|+-. +|++. ++|.... ...|++.+.||.+ ..+|||++
T Consensus 1 v~v~f~~~~~~t~~Ge~l~v~Gs~~~LG~W~~~~a~~l~~~~--~~~W~~~v~lp~~~~veyKyv~ 64 (97)
T cd05810 1 VSVTFSCNNGTTQLGQSVYVVGNVPQLGNWSPADAVKLDPTA--YPTWSGSISLPASTNVEWKCLK 64 (97)
T ss_pred CeEEEEEeecccCCCCeEEEEEChHHhCCCChhhcccccCCC--CCeEEEEEEcCCCCeEEEEEEE
Confidence 46777743 2 478999999886 89863 5776543 5689999999997 69999988
No 42
>PF11806 DUF3327: Domain of unknown function (DUF3327); InterPro: IPR021764 This entry represents the N-terminal domain of enterochelin esterase. The activity of the enzyme has been characterised [, ]. Fes catalyses the hydrolysis of the 2,3-dihydroxy-N-benzoyl-L-serine trimer, enterochelin, forming 2,3-dihydroxybenzoylserine. It also catalyses hydrolysis of free enterobactin and ferric enterobactin. Upon hydrolysis of ferric enterobactin by Fes, released iron is probably reduced by a second enzyme. Enterochelin esterase represents a family of non-peptidase homologues belonging to the MEROPS peptidase family S9, clan SC. ; GO: 0005506 iron ion binding, 0008849 enterochelin esterase activity, 0006826 iron ion transport, 0005737 cytoplasm; PDB: 3MGA_B 3C87_B 3C8H_B 3C8D_A 2B20_A.
Probab=95.91 E-value=0.055 Score=44.52 Aligned_cols=83 Identities=22% Similarity=0.340 Sum_probs=55.4
Q ss_pred eEEEEEec----CCCceEEEEeccCCCCC-----CCCCCCCCCCCCeEEEEEecCCc-eEEEEEEEcCe-----------
Q 024154 21 VPVRFIWP----NGGRRVSLSGSFTRWSE-----PMPMSPSEGCPAVFQIICRLPPG-HHQYKFYVDGE----------- 79 (271)
Q Consensus 21 vpVtF~w~----~~ak~V~V~GsF~nW~~-----~ipM~k~~~~~g~f~~~~~LppG-~yeYKFiVDG~----------- 79 (271)
+.|||.|. .....+.|.++.|+... ...|++..+ +.+|+.++.||.+ +-.|+|+.+-.
T Consensus 2 ~~VTFlWRdp~~~~~~~~~V~~~~ngvtD~~~~~~~~l~Rl~g-TDVW~~t~~lp~d~rgSY~~~p~~~~~~~~~r~~~r 80 (122)
T PF11806_consen 2 CLVTFLWRDPDEGASANVRVYGDINGVTDHHDPDPQSLQRLPG-TDVWYWTYRLPADWRGSYSFIPDVPDARGAQREWWR 80 (122)
T ss_dssp -EEEEEEE-TSTTT----EEEEEETTTTCGGGT---BEEE-TT-SSEEEEEEEEETT-EEEEEEEEES-T-HHHHHHHHH
T ss_pred cEEEEEEeCCCCCCCceeEEEEECCcccccccCChhhheeCCC-CceEEEEEEECcccEEEEEEEecCcccchhHHHHHH
Confidence 46999999 34578999999999854 247888764 6899999999997 78899997543
Q ss_pred -----eecCCCCCeee-CC---CCccccEEEecC
Q 024154 80 -----WRHDENQPHVS-GN---YGVVNCVYIAVP 104 (271)
Q Consensus 80 -----W~~Dp~~P~v~-d~---~G~~NNvl~V~~ 104 (271)
-+.||-||... .. .|+..++++.+.
T Consensus 81 ~~l~~~~~DPlNp~~~~~~~~~~g~~~S~l~Lp~ 114 (122)
T PF11806_consen 81 AILAQAQADPLNPRPWPNGAQDRGNAASVLELPD 114 (122)
T ss_dssp HHGGG-B--TTSSSEEE-TT---SSEEEEEE-TT
T ss_pred HHHhccCCCCCCCCCCCCCccccccccCceeCCC
Confidence 46789998754 33 488999999843
No 43
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=95.73 E-value=0.021 Score=46.47 Aligned_cols=49 Identities=22% Similarity=0.418 Sum_probs=44.2
Q ss_pred CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHH
Q 024154 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRE 216 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~ 216 (271)
++++++.+.++..|+..|.++++.++|+.|. ++++|++|..|++..+..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~dl~~~~~~ 50 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLDG--GKLVGIVSESDILKLLVT 50 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeEC--CeEEEEecHHHHHHHHHh
Confidence 4678899999999999999999999999997 899999999999887753
No 44
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=95.67 E-value=0.02 Score=43.33 Aligned_cols=45 Identities=24% Similarity=0.451 Sum_probs=41.2
Q ss_pred CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~ 212 (271)
+++.++.+.++.+|+..|.+++...+|+.|. ++++|++|..|++.
T Consensus 68 ~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~--~~~~Gvit~~di~~ 112 (113)
T cd04623 68 NVITVTPDDTVDEAMALMTERRFRHLPVVDG--GKLVGIVSIGDVVK 112 (113)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEeEEEeC--CEEEEEEEHHHhhc
Confidence 6788888999999999999999999999987 88999999999864
No 45
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=95.64 E-value=0.031 Score=43.44 Aligned_cols=49 Identities=20% Similarity=0.436 Sum_probs=44.2
Q ss_pred CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR 215 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~ 215 (271)
.++.++-+.++.+|+..|.++++...|+-|. .++++|++|..|++.++.
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~~~Giv~~~dl~~~~~ 50 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDE-NGKVVDVYSRFDVINLAK 50 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECC-CCeEEEEEeHHHHHHHHh
Confidence 4678899999999999999999999999987 688999999999998764
No 46
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=95.56 E-value=0.015 Score=44.71 Aligned_cols=56 Identities=21% Similarity=0.454 Sum_probs=45.9
Q ss_pred cccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154 156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (271)
Q Consensus 156 tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~ 212 (271)
++.+++....++.+++-+.++..|+..|.++++..+|+.|. .+.++||||..|+++
T Consensus 58 ~v~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~-~~~~~Gvl~~~di~~ 113 (114)
T cd04801 58 TVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVED-SGQVIGLITEADLLR 113 (114)
T ss_pred chhhhhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcC-CCcEEEEEeccceec
Confidence 35555544445678888999999999999999999999987 468999999999864
No 47
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=95.49 E-value=0.03 Score=43.73 Aligned_cols=51 Identities=22% Similarity=0.312 Sum_probs=44.8
Q ss_pred eEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHHh
Q 024154 167 VTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILREL 217 (271)
Q Consensus 167 ~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~~ 217 (271)
+++++.+.++.+|...|.++++..+|+-|..+++++|++|..|+++.+...
T Consensus 3 ~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~ 53 (123)
T cd04627 3 FIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWEN 53 (123)
T ss_pred ceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHh
Confidence 567788899999999999999999999998778999999999999876543
No 48
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=95.47 E-value=0.023 Score=44.66 Aligned_cols=47 Identities=19% Similarity=0.234 Sum_probs=42.8
Q ss_pred CCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154 165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (271)
Q Consensus 165 ~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~ 212 (271)
..++.++.+.++.+|+..|.++++..+|+.|.. ++++|++|.+|++.
T Consensus 79 ~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~-~~~~Giit~~dil~ 125 (126)
T cd04642 79 RPLITCTPSSTLKEVITKLVANKVHRVWVVDEE-GKPIGVITLTDIIS 125 (126)
T ss_pred CCCeEECCCCcHHHHHHHHHHhCCcEEEEECCC-CCEEEEEEHHHHhc
Confidence 458889999999999999999999999999975 78999999999875
No 49
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=95.34 E-value=0.042 Score=44.94 Aligned_cols=50 Identities=18% Similarity=0.204 Sum_probs=44.6
Q ss_pred CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHH
Q 024154 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRE 216 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~ 216 (271)
+++++..+.++++|...|.++++..+|+-|.+ ++++|+||..|++..+..
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~-g~l~Givt~~Dl~~~~~~ 51 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSD-DFLEGILTLGDIQRFLFT 51 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHHHHHHhh
Confidence 56788999999999999999999999999975 789999999999987653
No 50
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=95.29 E-value=0.058 Score=39.86 Aligned_cols=52 Identities=31% Similarity=0.551 Sum_probs=45.8
Q ss_pred CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHHhc
Q 024154 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELG 218 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~~~ 218 (271)
++++++.+.++..|+..|..++...+|++|.. ++++|+++..|++..+...+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~~~~~ 53 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDD-GRLVGIVTERDLLRALAEGG 53 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCC-CCEEEEEeHHHHHHHHHhcc
Confidence 56788999999999999999999999999976 89999999999998775543
No 51
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=95.27 E-value=0.026 Score=43.26 Aligned_cols=46 Identities=13% Similarity=0.197 Sum_probs=42.4
Q ss_pred eEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154 167 VTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (271)
Q Consensus 167 ~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~ 212 (271)
++.+.-+-++..|+..|.++++...|+=|...++++|++|..|.+.
T Consensus 52 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~ 97 (98)
T cd04618 52 LVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK 97 (98)
T ss_pred eEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence 6788899999999999999999999999877789999999999874
No 52
>cd05815 CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 1. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 starch binding domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal carbohydrate-binding domains. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabol
Probab=95.22 E-value=0.055 Score=42.39 Aligned_cols=54 Identities=30% Similarity=0.618 Sum_probs=40.0
Q ss_pred EEEEecC---CCceEEEEeccC---CCCCC--CCCCCC-CCCCCeEEEEEecCCc-eEEEEEEE
Q 024154 23 VRFIWPN---GGRRVSLSGSFT---RWSEP--MPMSPS-EGCPAVFQIICRLPPG-HHQYKFYV 76 (271)
Q Consensus 23 VtF~w~~---~ak~V~V~GsF~---nW~~~--ipM~k~-~~~~g~f~~~~~LppG-~yeYKFiV 76 (271)
++|...+ -|+++.|+|+-. +|... .+|... .+....|++++.+|++ ..+|||+|
T Consensus 2 l~f~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~~~~~~W~~~v~~~~~~~veYky~v 65 (101)
T cd05815 2 LSFKLPYYTQWGQSLLICGSDPLLGSWNVKKGLLLKPSHQGDVLVWSGSISVPPGFSSEYNYYV 65 (101)
T ss_pred EEEEEEEEccCCCEEEEEcChHHcCCcChHhcEeeeecCCCCCCEEEEEEEeCCCCcEEEEEEE
Confidence 5666654 479999999875 78653 578642 2223489999999887 59999999
No 53
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=95.14 E-value=0.023 Score=44.16 Aligned_cols=59 Identities=14% Similarity=0.159 Sum_probs=48.5
Q ss_pred hccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCC--CCceeeeechHHHHH
Q 024154 154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDF--KGRFVGVLSALDFIL 212 (271)
Q Consensus 154 ~~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~--~~~f~G~lt~tD~i~ 212 (271)
..++-+++....++++++.+-++..|+..|.++++...|+=|.. .++++|++|.+|++.
T Consensus 57 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 57 KVPVGVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred CCCHHHHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 34455555444568899999999999999999999999998876 378999999999875
No 54
>cd05806 CBM20_laforin Laforin protein tyrosine phosphatase, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Laforin, encoded by the EPM2A gene, is a dual-specificity phosphatase that dephosphorylates complex carbohydrates. Mutations in the gene encoding laforin result in Lafora disease, a fatal autosomal recessive neurodegenerative disorder characterized by the presence of intracellular deposits of insoluble, abnormally branched, glycogen-like polymers, known as Lafora bodies, in neurons, muscle, liver, and other tissues. The molecular basis for the formation of these Lafora bodies is unknown. Laforin is one of the only phosphatases that contains a carbohydrate-binding module. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen
Probab=95.10 E-value=0.26 Score=40.17 Aligned_cols=55 Identities=24% Similarity=0.368 Sum_probs=40.3
Q ss_pred EEEEEec----CCCceEEEEeccC---CCCCC--CCCCCCC-----CCCCeEEEEEecCCc----eEEEEEEE
Q 024154 22 PVRFIWP----NGGRRVSLSGSFT---RWSEP--MPMSPSE-----GCPAVFQIICRLPPG----HHQYKFYV 76 (271)
Q Consensus 22 pVtF~w~----~~ak~V~V~GsF~---nW~~~--ipM~k~~-----~~~g~f~~~~~LppG----~yeYKFiV 76 (271)
.|+|... ..+++|+|+|+-. +|+.. ++|.... .....|++++.|+++ ..+|||+.
T Consensus 2 ~~~f~~~~~~~~~gq~v~IvGsipeLG~Wd~~~Av~Ls~~~yt~~~~~~~~W~~~v~lp~~~~~~~~eYKfv~ 74 (112)
T cd05806 2 LFRFGVVLTFADRDTELLVLGSRPELGSWDPQRAVPMRPARKALSPQEPSLWLGEVELSEPGSEDTFWYKFLK 74 (112)
T ss_pred EEEEEEEEeecCCCCEEEEEECchhcCCCCcccccccccccccccCCCCCEEEEEEEcCCCCcCceEEEEEEE
Confidence 4666663 3678999999864 79864 5676541 123469999999985 69999998
No 55
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=95.08 E-value=0.038 Score=43.99 Aligned_cols=54 Identities=20% Similarity=0.412 Sum_probs=46.1
Q ss_pred ccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154 155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (271)
Q Consensus 155 ~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~ 212 (271)
.++.+++ ..+.+.++.+.++.+|+..|.+++....|+.| .+.++|++|..|+++
T Consensus 81 ~~v~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd--~g~~~Gvit~~di~~ 134 (135)
T cd04586 81 RKVADVM--TRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR--GGRLVGIVSRADLLR 134 (135)
T ss_pred CCHHHHh--CCCceEeCCCCcHHHHHHHHHHcCCCccCEec--CCEEEEEEEhHhhhc
Confidence 4455655 23678899999999999999999999999999 589999999999874
No 56
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=95.06 E-value=0.069 Score=40.43 Aligned_cols=50 Identities=22% Similarity=0.458 Sum_probs=44.1
Q ss_pred CCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154 165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR 215 (271)
Q Consensus 165 ~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~ 215 (271)
.+++.+..+.++.+|+..+.++++...|+-|.. ++++|++|..|+++.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~ 51 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVDED-GRLVGIVTSWDISKAVA 51 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEECCC-CcEEEEEeHHHHHHHHh
Confidence 467888999999999999999999889988865 89999999999987654
No 57
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=95.01 E-value=0.055 Score=41.70 Aligned_cols=48 Identities=21% Similarity=0.432 Sum_probs=43.3
Q ss_pred CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR 215 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~ 215 (271)
++++++.+.++++|...|.++++...|+.|. ++++|++|..|++..+.
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~ 49 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG--GKLVGIVTEKDIADALR 49 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC--CEEEEEEchHHHHHhhh
Confidence 4678899999999999999999999999996 89999999999987655
No 58
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=94.99 E-value=0.043 Score=41.64 Aligned_cols=45 Identities=13% Similarity=0.312 Sum_probs=41.3
Q ss_pred eEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154 167 VTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (271)
Q Consensus 167 ~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~ 212 (271)
+..++.+-++.+|+..|.++++...|+.|.. ++++|++|..|+++
T Consensus 51 ~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~-~~~~Giit~~di~~ 95 (96)
T cd04614 51 VVTATKRTTVSECAQKMKRNRIEQIPIINGN-DKLIGLLRDHDLLK 95 (96)
T ss_pred cEEecCCCCHHHHHHHHHHhCCCeeeEECCC-CcEEEEEEHHHhhc
Confidence 7788999999999999999999999999975 78999999999874
No 59
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=94.99 E-value=0.032 Score=42.96 Aligned_cols=55 Identities=20% Similarity=0.320 Sum_probs=45.5
Q ss_pred cccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHH
Q 024154 156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILI 213 (271)
Q Consensus 156 tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~i 213 (271)
++.+++. ..+..+..+-+++.|+..|.++++...|+=|.. ++++|++|..|++++
T Consensus 57 ~v~~~~~--~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~-~~~~Giit~~di~~~ 111 (111)
T cd04603 57 KVCEVYI--VPVPIVYCDSKVTDLLRIFRETEPPVVAVVDKE-GKLVGTIYERELLRF 111 (111)
T ss_pred Chhheee--cCCcEECCCCcHHHHHHHHHHcCCCeEEEEcCC-CeEEEEEEhHHhhcC
Confidence 3555553 346778889999999999999999999998866 689999999999863
No 60
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=94.97 E-value=0.064 Score=41.54 Aligned_cols=51 Identities=22% Similarity=0.399 Sum_probs=44.8
Q ss_pred CCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154 164 SGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR 215 (271)
Q Consensus 164 s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~ 215 (271)
|.++++++.+.++.+|+..|.++++..+|+-|.. ++++|++|..|+++.+.
T Consensus 1 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~~~l~~~~~ 51 (124)
T cd04600 1 SRDVVTVTPDTSLEEAWALLRRHRIKALPVVDGD-RRLVGIVTQRDLLRHAR 51 (124)
T ss_pred CCCcEEeCCCCCHHHHHHHHHHcCCceeeEECCC-CCEEEEEEHHHHHhhhc
Confidence 4578889999999999999999999999998865 88999999999987553
No 61
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=94.94 E-value=0.061 Score=40.68 Aligned_cols=48 Identities=27% Similarity=0.376 Sum_probs=42.9
Q ss_pred CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHH
Q 024154 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILIL 214 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il 214 (271)
.++++..+.++.+|...|.++++..+|+.|.. +.|+|++|..|+...+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~ 49 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDD-GRLVGIVSLDDIREIL 49 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEECCC-CCEEEEEEHHHHHHHH
Confidence 46788999999999999999999999999986 7899999999998754
No 62
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=94.94 E-value=0.12 Score=38.90 Aligned_cols=51 Identities=25% Similarity=0.348 Sum_probs=44.7
Q ss_pred CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHHh
Q 024154 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILREL 217 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~~ 217 (271)
++++++.+.++.+|+..+.++++...|+-|.. ++++|++|..|++..+...
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~~~l~~~~~~~ 52 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDG-GRLVGIFSERDIVRKVALR 52 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECCC-CCEEEEEehHHHHHHHhhc
Confidence 56778899999999999999999999999975 6899999999999866543
No 63
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=94.84 E-value=0.043 Score=42.34 Aligned_cols=54 Identities=20% Similarity=0.466 Sum_probs=44.9
Q ss_pred ccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154 155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (271)
Q Consensus 155 ~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~ 212 (271)
.++.+++.. ..+.++.+.++.+|+..|.+++...+|+.|. ++++|++|..|+++
T Consensus 67 ~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~Gvi~~~dl~~ 120 (121)
T cd04633 67 LPVSDIMTR--PVITIEPDTSVSDVASLMLENNIGGLPVVDD--GKLVGIVTRTDILR 120 (121)
T ss_pred cCHHHHccC--CceEECCCCcHHHHHHHHHHcCCCcccEEEC--CEEEEEEEHHHhhc
Confidence 344454432 5778899999999999999999999999986 78999999999874
No 64
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=94.82 E-value=0.037 Score=42.01 Aligned_cols=53 Identities=32% Similarity=0.560 Sum_probs=45.1
Q ss_pred cccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154 156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (271)
Q Consensus 156 tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~ 212 (271)
++.+++. .+.+.++-+.++.+|+..|.++++..+|+=|. +.++|++|..|+++
T Consensus 58 ~i~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~Giit~~di~~ 110 (111)
T cd04800 58 PVSEVMT--APPITIPPDATVFEALLLMLERGIHHLPVVDD--GRLVGVISATDLLR 110 (111)
T ss_pred CHHHHhC--CCCeEECCCCcHHHHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhhc
Confidence 3555553 36888999999999999999999999999876 88999999999985
No 65
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=94.80 E-value=0.063 Score=41.03 Aligned_cols=48 Identities=19% Similarity=0.407 Sum_probs=43.3
Q ss_pred CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR 215 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~ 215 (271)
++++++.+.++.+|+..|.++++...|+.|. ++|+|+++..|+...+.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~i~~~~l~~~~~ 49 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR--GKLVGIVTDRDLKLASP 49 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecC--CeEEEEEeHHHHHHhhh
Confidence 5678999999999999999999999999998 89999999999987553
No 66
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=94.79 E-value=0.079 Score=40.10 Aligned_cols=48 Identities=21% Similarity=0.425 Sum_probs=42.7
Q ss_pred CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR 215 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~ 215 (271)
++++++.+.++.+|+..|.++++..+|+-|. ++++|+++..|+++.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~~l~~~~~ 49 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVDD--GKLVGIVTLSDIAHAIA 49 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHh
Confidence 4678889999999999999999999999887 78999999999987654
No 67
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=94.75 E-value=0.084 Score=41.39 Aligned_cols=49 Identities=27% Similarity=0.491 Sum_probs=43.6
Q ss_pred CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR 215 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~ 215 (271)
+++++..+.++.+|+..|.++++..+|+-|.. ++++|++|..|++..+.
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~dl~~~~~ 50 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDN-GKLTGIVTRHDIVDFVV 50 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCC-CcEEEEEEHHHHHHHHh
Confidence 46778899999999999999999999999877 78999999999998654
No 68
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=94.72 E-value=0.084 Score=39.64 Aligned_cols=49 Identities=33% Similarity=0.509 Sum_probs=43.5
Q ss_pred CCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154 165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR 215 (271)
Q Consensus 165 ~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~ 215 (271)
+.+++++.+.++++|...+.++++..+|+-|. ++++|++|..|+.+.+.
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~ 49 (110)
T cd04609 1 GDVVSVAPDDTVSQAIERMREYGVSQLPVVDD--GRVVGSIDESDLLDALI 49 (110)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCceeeEeeC--CeeEEEEeHHHHHHHHh
Confidence 35678899999999999999999999999886 89999999999998764
No 69
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=94.67 E-value=0.091 Score=53.81 Aligned_cols=66 Identities=18% Similarity=0.271 Sum_probs=46.4
Q ss_pred EEEEE-ecCCCceEEEEeccCCCCC-----CCCCCCCCCCCCeEEEEEe-cCCc-eEEEEEEEcCe--eecCCCCCeee
Q 024154 22 PVRFI-WPNGGRRVSLSGSFTRWSE-----PMPMSPSEGCPAVFQIICR-LPPG-HHQYKFYVDGE--WRHDENQPHVS 90 (271)
Q Consensus 22 pVtF~-w~~~ak~V~V~GsF~nW~~-----~ipM~k~~~~~g~f~~~~~-LppG-~yeYKFiVDG~--W~~Dp~~P~v~ 90 (271)
-++|+ |...|++|.|++ |++|.. .++|.+.. .|+|++.++ +.+| .|.|+...+|. ++.||....+.
T Consensus 20 ~~~F~vwaP~a~~V~l~~-~~~~~~~~~~~~~~m~~~~--~gvw~~~i~~~~~g~~Y~y~v~~~~~~~~~~DPya~~~~ 95 (605)
T TIGR02104 20 KTVFRVWAPTATEVELLL-YKSGEDGEPYKVVKMKRGE--NGVWSAVLEGDLHGYFYTYQVCINGKWRETVDPYAKAVT 95 (605)
T ss_pred eeEEEEECCCCCEEEEEE-EcCCCCCccceEEecccCC--CCEEEEEECCCCCCCEEEEEEEcCCCeEEEcCCCcceec
Confidence 36775 566899999998 888853 35888754 699999987 4555 44444444564 58898876544
No 70
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=94.63 E-value=0.053 Score=41.94 Aligned_cols=61 Identities=23% Similarity=0.480 Sum_probs=37.8
Q ss_pred EEEEEecC------CCceEEEEeccCCCCCC--CCCCCCC--CCCCeEEEEEecCCceEEEEEEE-cC--eeec
Q 024154 22 PVRFIWPN------GGRRVSLSGSFTRWSEP--MPMSPSE--GCPAVFQIICRLPPGHHQYKFYV-DG--EWRH 82 (271)
Q Consensus 22 pVtF~w~~------~ak~V~V~GsF~nW~~~--ipM~k~~--~~~g~f~~~~~LppG~yeYKFiV-DG--~W~~ 82 (271)
+|++.|.. ++.+|++.+.|++|+.. ++|.+.. ...+.|++++.+|..-|+..|+. || .|-.
T Consensus 3 ~vtVyYn~~~~~l~g~~~v~~~~G~n~W~~~~~~~m~~~~~~~~~~~~~~tv~vP~~a~~~dfvF~dg~~~wDN 76 (87)
T PF03423_consen 3 TVTVYYNPSLTALSGAPNVHLHGGFNRWTHVPGFGMTKMCVPDEGGWWKATVDVPEDAYVMDFVFNDGAGNWDN 76 (87)
T ss_dssp EEEEEE---E-SSS-S-EEEEEETTS-B-SSS-EE-EEESS---TTEEEEEEE--TTTSEEEEEEE-SSS-EES
T ss_pred EEEEEEEeCCCCCCCCCcEEEEecCCCCCcCCCCCcceeeeeecCCEEEEEEEEcCCceEEEEEEcCCCCcEeC
Confidence 57777743 46899999999999864 4576542 12589999999999988888888 65 4533
No 71
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=94.62 E-value=0.068 Score=40.53 Aligned_cols=48 Identities=19% Similarity=0.322 Sum_probs=42.5
Q ss_pred CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHH
Q 024154 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILIL 214 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il 214 (271)
.+++++.+.++.+|+..|.++++..+|+-|.. ++++|++|..|+.+.+
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~ 49 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDDD-GKLSGIITERDLIAKS 49 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECCC-CCEEEEEEHHHHhcCC
Confidence 46788999999999999999999999999854 8999999999998744
No 72
>PLN02316 synthase/transferase
Probab=94.57 E-value=0.12 Score=56.18 Aligned_cols=76 Identities=13% Similarity=0.167 Sum_probs=56.0
Q ss_pred CCCCCCCCCCCCCCCCCcceEEEEEecC------CCceEEEEeccCCCCCC---CCCCCCCCCCCeEEEEEecCCceEEE
Q 024154 2 YNSGLNTGHENSGVVGSILVPVRFIWPN------GGRRVSLSGSFTRWSEP---MPMSPSEGCPAVFQIICRLPPGHHQY 72 (271)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~vpVtF~w~~------~ak~V~V~GsF~nW~~~---ipM~k~~~~~g~f~~~~~LppG~yeY 72 (271)
|..|+-++-.|...... .++++.|+. +..+|.|.|.||+|... .+|.|.+..+++|+..+.+|++-|..
T Consensus 137 ~~~~~~~f~~P~~~~a~--~~~~v~~n~~~~~L~~~~~v~i~~gfN~W~~~~f~~~~~k~~~~g~ww~~~v~Vp~~A~~l 214 (1036)
T PLN02316 137 FSRGNKLFVYPQVVKPD--SDIEVYLNRSLSTLANEPDVLIMGAFNGWRWKSFTERLEKTELGGDWWSCKLHIPKEAYKM 214 (1036)
T ss_pred cCCCCeEEeccccccCC--CeeEEEEcCCCCccCCCCceEEEeccccccccccceeccccccCCCeEEEEEecCccceEE
Confidence 34555566666665544 455666653 35789999999999764 37777664467899999999999999
Q ss_pred EEEE-cCe
Q 024154 73 KFYV-DGE 79 (271)
Q Consensus 73 KFiV-DG~ 79 (271)
-|+. ||.
T Consensus 215 dfVf~~g~ 222 (1036)
T PLN02316 215 DFVFFNGQ 222 (1036)
T ss_pred EEEEeCCc
Confidence 9998 773
No 73
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=94.55 E-value=0.12 Score=39.20 Aligned_cols=50 Identities=22% Similarity=0.436 Sum_probs=44.8
Q ss_pred CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR 215 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~ 215 (271)
.++++..+.++.+|...|.++++...|+-|..+++++|++|..|.+..+.
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~ 51 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALA 51 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHH
Confidence 57888999999999999999999999998887789999999999998664
No 74
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=94.52 E-value=0.1 Score=39.61 Aligned_cols=48 Identities=25% Similarity=0.414 Sum_probs=43.5
Q ss_pred CCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHH
Q 024154 165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILIL 214 (271)
Q Consensus 165 ~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il 214 (271)
.++++++.+.++++|...|.+++...+|+-|. ++++|+++..|.+..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~dl~~~~ 49 (110)
T cd04595 2 SPVKTVRPEATIEEARELLLRYGHTALPVVEG--GRVVGIISRRDVEKAL 49 (110)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeC--CEEEEEEEHHHHHHHH
Confidence 46789999999999999999999989999997 8999999999988765
No 75
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=94.51 E-value=0.1 Score=39.73 Aligned_cols=48 Identities=27% Similarity=0.543 Sum_probs=43.0
Q ss_pred CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHH
Q 024154 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILIL 214 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il 214 (271)
+++.+..+.++.+|+..+.++++..+|+-|. .++++|+++..|+++.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~~Giv~~~dl~~~~ 49 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDK-EGKYVGTISLTDILWKL 49 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECC-CCcEEEEEeHHHHHHHh
Confidence 6788999999999999999999999999985 57899999999998755
No 76
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=94.49 E-value=0.18 Score=38.67 Aligned_cols=51 Identities=16% Similarity=0.244 Sum_probs=44.5
Q ss_pred CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHH
Q 024154 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRE 216 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~ 216 (271)
+++++..+.++.+|+..|.+++...+|+-|...++++|++|..|+++.+..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~ 52 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVA 52 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHh
Confidence 467888899999999999999999999998766899999999999886543
No 77
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=94.47 E-value=0.22 Score=48.81 Aligned_cols=86 Identities=23% Similarity=0.296 Sum_probs=59.9
Q ss_pred CcceEEEEEecCC-C-------ceEEEEec----cCCCCCCCCCCCCCCCCCeEEEEEecCCc-eEEEEEEEc---C---
Q 024154 18 SILVPVRFIWPNG-G-------RRVSLSGS----FTRWSEPMPMSPSEGCPAVFQIICRLPPG-HHQYKFYVD---G--- 78 (271)
Q Consensus 18 ~~~vpVtF~w~~~-a-------k~V~V~Gs----F~nW~~~ipM~k~~~~~g~f~~~~~LppG-~yeYKFiVD---G--- 78 (271)
...+.|||-|... + ++|+|-+. ...+....+|++..+ +.+|+.++.||.. +-.|+|+++ .
T Consensus 36 ~~~~~vTFlwr~~~~~~~~~~~~~v~~~~n~~tdh~~~~~~~~l~rl~~-tDvW~~~~~~p~~~r~sY~~~~~~~~~~~~ 114 (411)
T PRK10439 36 DGMVRVTFWWRDPQGDEEHSTIRRVWIYINGVTDHHQNSQPQSLQRIAG-TDVWQWSTELSANWRGSYCFIPTERDDIFS 114 (411)
T ss_pred CCcEEEEEEeeCCCCCcccccceeEEEeCCCCCCcCccCCcchhhccCC-CceEEEEEEECcccEEEEEEEecccccccc
Confidence 3458999999862 2 36887422 222433457998874 7899999999997 799999992 1
Q ss_pred ----------------------eeecCCCCCeee-CCCCccccEEEecC
Q 024154 79 ----------------------EWRHDENQPHVS-GNYGVVNCVYIAVP 104 (271)
Q Consensus 79 ----------------------~W~~Dp~~P~v~-d~~G~~NNvl~V~~ 104 (271)
.-+.||.+|... +..|+..|+++++.
T Consensus 115 ~~~~~~~~~~~~~r~~~~~l~~~~~~DP~N~~~~~~~~~~~~S~l~lp~ 163 (411)
T PRK10439 115 AFAPAPSPDRLELREGWRKLLPQAIADPLNPQSWRGGRGHAVSALEMPQ 163 (411)
T ss_pred ccccccchhHHHHHHHHHHhhccccCCCCCCCCCCCCCccccccccCCC
Confidence 114788888754 44566678999844
No 78
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=94.46 E-value=0.078 Score=39.69 Aligned_cols=45 Identities=18% Similarity=0.287 Sum_probs=40.2
Q ss_pred CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~ 212 (271)
+++.+..+.+++.|+..|.++++..+|+.| + ++++|++|..|++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-~-~~~~Giv~~~~l~~ 46 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE-D-GKLVGIITSRDVRR 46 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEE-C-CEEEEEEehHHhhc
Confidence 467788899999999999999999999998 3 89999999999875
No 79
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=94.45 E-value=0.074 Score=41.04 Aligned_cols=53 Identities=15% Similarity=0.347 Sum_probs=44.5
Q ss_pred ccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154 157 VYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (271)
Q Consensus 157 cYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~ 212 (271)
+-+++. .+.++++-+.++.+|+..|.+++...+|+.|.. +.++|++|..|++.
T Consensus 69 ~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~-g~~~Gvit~~dl~~ 121 (122)
T cd04635 69 VEKIMS--TPVYSVTPDDSIATAVELMLEHDIGRLPVVNEK-DQLVGIVDRHDVLK 121 (122)
T ss_pred HHHHhc--CCCeeECCCCCHHHHHHHHHHcCCCeeeEEcCC-CcEEEEEEhHHhhc
Confidence 444443 357888989999999999999999999999865 78999999999874
No 80
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=94.45 E-value=0.081 Score=39.91 Aligned_cols=46 Identities=24% Similarity=0.462 Sum_probs=41.4
Q ss_pred CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~ 212 (271)
..+.++.+.++.+++..|.+++...+|+.|. .+.++|++|..|+++
T Consensus 65 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~it~~di~~ 110 (111)
T cd04612 65 DPVTASPDETLRDALKRMAERDIGRLPVVDD-SGRLVGIVSRSDLLR 110 (111)
T ss_pred CCeEECCCCCHHHHHHHHHhCCCCeeeEEcC-CCCEEEEEEHHHhhh
Confidence 4688899999999999999999999999987 477999999999874
No 81
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=94.43 E-value=0.1 Score=39.62 Aligned_cols=48 Identities=19% Similarity=0.306 Sum_probs=42.4
Q ss_pred CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR 215 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~ 215 (271)
+++++.-+.++++|+..|.+++...+|+.|.. +|+|++|..|++..+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~G~v~~~dl~~~~~ 49 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVDNE--KPVGIITERDLVKKVV 49 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEECC--EEEEEEEHHHHHHHHh
Confidence 46778889999999999999999999999975 9999999999998553
No 82
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=94.38 E-value=0.1 Score=40.25 Aligned_cols=50 Identities=20% Similarity=0.349 Sum_probs=44.2
Q ss_pred CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHH
Q 024154 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRE 216 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~ 216 (271)
++++++.+.++..|+..|.++++..+|+-|.. ++++|++|..|++..+..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~ 51 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNED-GKLVGLLTQRDLLRAALS 51 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECCC-CCEEEEEEHHHHHHHhcc
Confidence 56788999999999999999999999998864 899999999999886643
No 83
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=94.33 E-value=0.09 Score=41.00 Aligned_cols=46 Identities=22% Similarity=0.476 Sum_probs=41.8
Q ss_pred CCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHH
Q 024154 164 SGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDF 210 (271)
Q Consensus 164 s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~ 210 (271)
+.+++.++.+-++.+|+..|.++++..+|+=|.+ ++++|++|..|+
T Consensus 75 ~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-~~~vGiit~~di 120 (123)
T cd04627 75 TSDVISINGDQPLIDALHLMHNEGISSVAVVDNQ-GNLIGNISVTDV 120 (123)
T ss_pred cCCceEeCCCCCHHHHHHHHHHcCCceEEEECCC-CcEEEEEeHHHh
Confidence 4678899999999999999999999999999886 679999999986
No 84
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=94.30 E-value=0.073 Score=40.35 Aligned_cols=46 Identities=28% Similarity=0.457 Sum_probs=40.8
Q ss_pred CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~ 212 (271)
....+..+.++.+|+..+.+++...+|+.|.. ++++|++|..|++.
T Consensus 68 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~-~~~iG~it~~di~~ 113 (114)
T cd04604 68 NPKTIDPDALAAEALELMEENKITALPVVDDN-GRPVGVLHIHDLLR 113 (114)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCC-CCEEEEEEHHHhhc
Confidence 34678889999999999999999999999875 88999999999875
No 85
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=94.27 E-value=0.14 Score=39.78 Aligned_cols=49 Identities=22% Similarity=0.251 Sum_probs=43.7
Q ss_pred CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR 215 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~ 215 (271)
+.++++.+.++..|+..|.++++..+|+-|.+ ++++|++|..|+++.+.
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~-~~~~Givt~~dl~~~~~ 50 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDED-GDLVGVVSRKDLLKASI 50 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHHHHH
Confidence 56889999999999999999999999998864 67999999999998765
No 86
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=94.27 E-value=0.11 Score=41.24 Aligned_cols=50 Identities=24% Similarity=0.441 Sum_probs=44.2
Q ss_pred CCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHH
Q 024154 164 SGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILIL 214 (271)
Q Consensus 164 s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il 214 (271)
|..+++++.+.+++.|+..|.++++..+|+-|+ .++++|++|..|++..+
T Consensus 1 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~~Gvi~~~dl~~~~ 50 (135)
T cd04586 1 TTDVVTVSPETSVAEAARLMLDNHISGLPVVDD-DGRLVGIVSEGDLLRRA 50 (135)
T ss_pred CCCCEEeCCCCCHHHHHHHHHHcCCCCceEECC-CCCEEEEeeHHHHHHHh
Confidence 456788999999999999999999999999985 48899999999998754
No 87
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=94.24 E-value=0.13 Score=39.07 Aligned_cols=47 Identities=15% Similarity=0.297 Sum_probs=41.9
Q ss_pred CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHH
Q 024154 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILIL 214 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il 214 (271)
+.+++..+.++++|...|.+++...+++-|. ++++|+++..|++..+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~ 48 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDG--DPRLGIVTRTDLLDAV 48 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecC--CeEEEEEEHHHHHHHH
Confidence 4678899999999999999999989999887 6899999999998765
No 88
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=94.23 E-value=0.1 Score=39.86 Aligned_cols=55 Identities=22% Similarity=0.471 Sum_probs=45.1
Q ss_pred ccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154 155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (271)
Q Consensus 155 ~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~ 212 (271)
.++-+++.. ..++++-+.++.+++..|.+++...+|+=|. .++++|++|..|+++
T Consensus 67 ~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvvt~~di~~ 121 (122)
T cd04585 67 IKVSDIMTR--DPITVSPDASVEEAAELMLERKISGLPVVDD-QGRLVGIITESDLFR 121 (122)
T ss_pred cCHHHhccC--CCeEeCCCCcHHHHHHHHHHcCCCceeEECC-CCcEEEEEEHHHhhh
Confidence 344454433 5788999999999999999999999999885 478999999999875
No 89
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=94.21 E-value=0.15 Score=39.29 Aligned_cols=50 Identities=28% Similarity=0.533 Sum_probs=44.2
Q ss_pred CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHH
Q 024154 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRE 216 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~ 216 (271)
++.++..+.++.+|+..|.+++...+|+=|.. ++++|++|..|+++.+..
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~-g~~~G~vt~~dl~~~~~~ 51 (114)
T cd04619 2 RLAKIDVNATLQRAAKILGEPGIDLVVVCDPH-GKLAGVLTKTDVVRQMGR 51 (114)
T ss_pred ceEEECCCCcHHHHHHHHHhcCCCEEEEECCC-CCEEEEEehHHHHHHHhh
Confidence 57788999999999999999999999998865 689999999999986643
No 90
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=94.14 E-value=0.086 Score=49.32 Aligned_cols=63 Identities=17% Similarity=0.354 Sum_probs=57.6
Q ss_pred hhhccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHH
Q 024154 152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILIL 214 (271)
Q Consensus 152 l~~~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il 214 (271)
|...++-|+|=.-.+++.++.+.++.+++..+.+++..-.|+++....+++|++++.|++..+
T Consensus 64 l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~ 126 (292)
T PRK15094 64 IADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFM 126 (292)
T ss_pred cCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHh
Confidence 577799999976679999999999999999999999999999998888999999999998755
No 91
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=94.13 E-value=0.08 Score=40.18 Aligned_cols=54 Identities=19% Similarity=0.322 Sum_probs=44.8
Q ss_pred cccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154 156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (271)
Q Consensus 156 tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~ 212 (271)
++.+++. ...++++-+.++.+|+..+.+++....|+.|.. +.++|++|..|+++
T Consensus 59 ~v~~i~~--~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~-~~~~Gvvs~~dl~~ 112 (113)
T cd04587 59 LVERVMT--PNPVCATSDTPVLEALHLMVQGKFRHLPVVDKS-GQVVGLLDVTKLTH 112 (113)
T ss_pred CHHHhcC--CCCeEEcCCCCHHHHHHHHHHcCCCcccEECCC-CCEEEEEEHHHhcc
Confidence 4666653 356678888889999999999999999999875 78999999999874
No 92
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=94.09 E-value=0.083 Score=40.54 Aligned_cols=45 Identities=13% Similarity=0.400 Sum_probs=41.0
Q ss_pred CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~ 212 (271)
.++.+..+.++.+|+..|.+++...+|+.|. +.++|++|..|++.
T Consensus 69 ~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~--~~~~Gvi~~~dl~~ 113 (114)
T cd04630 69 PLISVSPDMDIKYCARLMERTNIRRAPVVEN--NELIGIISLTDIFL 113 (114)
T ss_pred CCeeECCCCCHHHHHHHHHHcCCCEeeEeeC--CEEEEEEEHHHhhc
Confidence 5788899999999999999999999999986 88999999999864
No 93
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=94.07 E-value=0.1 Score=39.59 Aligned_cols=52 Identities=19% Similarity=0.324 Sum_probs=43.3
Q ss_pred ccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154 157 VYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (271)
Q Consensus 157 cYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~ 212 (271)
+-+++. ....+++.+.++..|+..|.+++....|+.| .++++|++|..|++.
T Consensus 60 v~~~~~--~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~--~~~~~Gvvt~~dl~~ 111 (112)
T cd04625 60 VRAIMN--PEPIVASPDDSIDEVRRLMVERHLRYLPVLD--GGTLLGVISFHDVAK 111 (112)
T ss_pred HHHHhC--CCCeEECCCCCHHHHHHHHHHcCCCeeeEEE--CCEEEEEEEHHHhhc
Confidence 445553 3467789999999999999999999999998 378999999999874
No 94
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=94.07 E-value=0.082 Score=40.09 Aligned_cols=46 Identities=11% Similarity=0.188 Sum_probs=40.6
Q ss_pred CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~ 212 (271)
.++.++.+.++..|+..|.+++...+|+.|.. +.++|++|..|++.
T Consensus 65 ~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~di~~ 110 (111)
T cd04590 65 PPLFVPESTPLDDLLEEMRKERSHMAIVVDEY-GGTAGLVTLEDILE 110 (111)
T ss_pred CCeecCCCCcHHHHHHHHHhcCCcEEEEEECC-CCEEEEeEHHHhhc
Confidence 46778889999999999999999999999864 67999999999874
No 95
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=94.03 E-value=0.087 Score=39.98 Aligned_cols=54 Identities=19% Similarity=0.429 Sum_probs=44.9
Q ss_pred ccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154 155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (271)
Q Consensus 155 ~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~ 212 (271)
..|.+++-. ..+.++.+.++..|+..|.+++....|+=| .++++|++|..|++.
T Consensus 56 ~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~--~~~~~Gvvt~~di~~ 109 (110)
T cd04595 56 APVKDYMST--DVVTVPPDTPLSEVQELMVEHDIGRVPVVE--DGRLVGIVTRTDLLR 109 (110)
T ss_pred CcHHHHhcC--CCEEECCCCcHHHHHHHHHHcCCCeeEEEe--CCEEEEEEEhHHhhc
Confidence 345555533 477899999999999999999999999987 578999999999874
No 96
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=94.03 E-value=0.14 Score=38.71 Aligned_cols=47 Identities=19% Similarity=0.345 Sum_probs=41.9
Q ss_pred CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHH
Q 024154 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILIL 214 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il 214 (271)
++++++.+.++++|...|.++++..+|+-|. ++++|+++..|++..+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~ 48 (111)
T cd04800 2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD--GRLVGIVTDRDLRNRV 48 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHH
Confidence 5678899999999999999999989999887 8999999999998643
No 97
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=94.02 E-value=0.12 Score=39.18 Aligned_cols=47 Identities=15% Similarity=0.265 Sum_probs=41.9
Q ss_pred CCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154 165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (271)
Q Consensus 165 ~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~ 212 (271)
.+...++.+.++.+|+..|.+++...+|+.+.. +.++|++|..|++.
T Consensus 63 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~~G~v~~~di~~ 109 (110)
T cd04605 63 RNVITATPDEPIDVAARKMERHNISALPVVDAE-NRVIGIITSEDISK 109 (110)
T ss_pred CCCeEECCCCcHHHHHHHHHHhCCCEEeEECCC-CcEEEEEEHHHhhh
Confidence 367788899999999999999999999999865 78999999999864
No 98
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=93.96 E-value=0.14 Score=39.71 Aligned_cols=50 Identities=22% Similarity=0.459 Sum_probs=44.5
Q ss_pred CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR 215 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~ 215 (271)
+++.++.+.++..|...|.+++...+|+-|...++++|+++..|++..+.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~ 51 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLG 51 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhh
Confidence 46778999999999999999999999999987789999999999987654
No 99
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=93.94 E-value=0.097 Score=39.41 Aligned_cols=45 Identities=22% Similarity=0.414 Sum_probs=38.1
Q ss_pred eEEEcc-cchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154 167 VTALDV-NLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (271)
Q Consensus 167 ~vv~D~-~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~ 212 (271)
.+.++. +.++.+|+..+.+++...+|+.|. .+.++|++|.+|++.
T Consensus 64 ~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvi~~~dil~ 109 (110)
T cd04601 64 NLLTTVEGTSLEEALELLHEHKIEKLPVVDD-EGKLKGLITVKDIEK 109 (110)
T ss_pred ceEEecCCCCHHHHHHHHHHhCCCeeeEEcC-CCCEEEEEEhhhhhc
Confidence 344455 888899999999999999999986 468999999999875
No 100
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=93.93 E-value=0.14 Score=38.64 Aligned_cols=48 Identities=25% Similarity=0.485 Sum_probs=42.5
Q ss_pred CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR 215 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~ 215 (271)
+.+.++.+.++.+|...|.++++...|+-|. +.++|+++..|++..+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~ 49 (111)
T cd04612 2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD--GRLVGIVTLADIRRVPA 49 (111)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC--CeEEEEEEHHHHHHHHh
Confidence 4678899999999999999999988999887 89999999999987553
No 101
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=93.90 E-value=0.16 Score=38.30 Aligned_cols=48 Identities=19% Similarity=0.364 Sum_probs=42.6
Q ss_pred CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR 215 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~ 215 (271)
++.+++.+.++.+|+..|.+++...+|+-|. ++++|++|..|+++.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~~l~~~~~ 49 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDD--GRPLGIVTERDILRLLA 49 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeC--CEEEEEEeHHHHHHHHh
Confidence 5678899999999999999999989999886 88999999999987653
No 102
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=93.89 E-value=0.12 Score=39.36 Aligned_cols=48 Identities=21% Similarity=0.389 Sum_probs=41.9
Q ss_pred CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHH
Q 024154 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILIL 214 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il 214 (271)
..+.++.+.++.+|+..|.+++...+|+=|.. ++++|++|..|+++.|
T Consensus 62 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~dll~~~ 109 (109)
T cd04606 62 DVISVSADDDQEEVARLFEKYDLLALPVVDEE-GRLVGIITVDDVIDVI 109 (109)
T ss_pred CCeEEcCCCCHHHHHHHHHHcCCceeeeECCC-CcEEEEEEhHHhhhhC
Confidence 47888899999999999999999888887754 6899999999998753
No 103
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=93.87 E-value=0.091 Score=40.52 Aligned_cols=46 Identities=26% Similarity=0.397 Sum_probs=41.3
Q ss_pred CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~ 212 (271)
.++++..+-++.+|+..|.++++...|+.|.+ ++++|++|..|++.
T Consensus 68 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-~~~~Gvi~~~dl~~ 113 (114)
T cd04619 68 AVVSCRPGDLLHDVWQVMKQRGLKNIPVVDEN-ARPLGVLNARDALK 113 (114)
T ss_pred CCeeECCCCCHHHHHHHHHHcCCCeEEEECCC-CcEEEEEEhHhhcc
Confidence 57788888889999999999999999999855 68999999999875
No 104
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=93.81 E-value=0.16 Score=38.42 Aligned_cols=50 Identities=26% Similarity=0.308 Sum_probs=43.0
Q ss_pred CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHH
Q 024154 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRE 216 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~ 216 (271)
+.+.++.+.++.+|...|.+.+...+|+-|.. ++++|+++..|++..+..
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~ 51 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDGD-GHLVGLLTRDDLIRALAE 51 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECCC-CcEEEEeeHHHHHHHHHh
Confidence 45678899999999999999999999998864 789999999999986643
No 105
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=93.78 E-value=0.11 Score=38.79 Aligned_cols=44 Identities=14% Similarity=0.339 Sum_probs=40.6
Q ss_pred CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHH
Q 024154 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFI 211 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i 211 (271)
..++++.+.++..|+..|.+++...+|+-|. ++++|++|..|++
T Consensus 60 ~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~~l~ 103 (105)
T cd04599 60 EVVTISPEASLLEAKRLMEEKKIERLPVLRE--RKLVGIITKGTIA 103 (105)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEeeEEEC--CEEEEEEEHHHhc
Confidence 5778899999999999999999999999986 8999999999986
No 106
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=93.77 E-value=0.11 Score=39.30 Aligned_cols=46 Identities=28% Similarity=0.398 Sum_probs=40.7
Q ss_pred CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~ 212 (271)
....+..+.++.+|+..+.+++...+|+.|.. +.++|++|..|+++
T Consensus 67 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~G~it~~di~~ 112 (113)
T cd04622 67 GVVTVTEDDDVDEAARLMREHQVRRLPVVDDD-GRLVGIVSLGDLAR 112 (113)
T ss_pred CccEECCCCCHHHHHHHHHHcCCCeeeEECCC-CcEEEEEEHHHhhc
Confidence 46677888899999999999999999999864 78999999999864
No 107
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=93.72 E-value=0.11 Score=39.44 Aligned_cols=53 Identities=19% Similarity=0.449 Sum_probs=44.0
Q ss_pred cccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154 156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (271)
Q Consensus 156 tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~ 212 (271)
++.+++. ...+.+..+.++..|+..|.++++..+|+.|. +.++|++|..|++.
T Consensus 58 ~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~di~~ 110 (111)
T cd04626 58 KVFNIVS--QDVFYVNEEDTIDEALDIMREKQIGRLPVVDD--NKLIGVVRTKDILD 110 (111)
T ss_pred cHHHHhc--CCcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC--CEEEEEEEhHHhcc
Confidence 3444443 46777888899999999999999999999986 78999999999863
No 108
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=93.71 E-value=0.11 Score=39.43 Aligned_cols=45 Identities=20% Similarity=0.343 Sum_probs=41.2
Q ss_pred CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~ 212 (271)
+.++++.+.++.+|+..+.+++....|+=|. +.++|++|..|++.
T Consensus 69 ~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~Gvit~~di~~ 113 (114)
T cd04629 69 EVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD--GKLVGQISRRDVLR 113 (114)
T ss_pred CceEECCCCcHHHHHHHHHHhCCCccCEEEC--CEEEEEEEHHHHhc
Confidence 6788999999999999999999999999886 79999999999874
No 109
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=93.70 E-value=0.17 Score=39.02 Aligned_cols=49 Identities=14% Similarity=0.357 Sum_probs=43.5
Q ss_pred CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHH
Q 024154 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRE 216 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~ 216 (271)
+++.+..+.++++|+..|.++++...|+-|. ++++|++|..|+.+.+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~ 50 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED--NELVGVISDRDYLKAISP 50 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC--CeEEEEEEHHHHHHHHHH
Confidence 5678899999999999999999999999996 899999999999876543
No 110
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=93.67 E-value=0.2 Score=37.92 Aligned_cols=50 Identities=18% Similarity=0.311 Sum_probs=43.1
Q ss_pred CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHH
Q 024154 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRE 216 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~ 216 (271)
+++++..+.++++|...|.++++...|+-|.+ ++++|++|..|+++.+..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~~l~~~~~~ 51 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPD-ERPIGIVTERDIVRAVAA 51 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCC-CCEEEEeeHHHHHHHHhc
Confidence 45678889999999999999999889988876 899999999999876543
No 111
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=93.65 E-value=0.13 Score=39.00 Aligned_cols=46 Identities=22% Similarity=0.422 Sum_probs=40.7
Q ss_pred CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~ 212 (271)
+..+++.+.++.+|+..|.+++....|+.|.. ++++|++|..|++.
T Consensus 67 ~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~-g~~~Gvvt~~dl~~ 112 (113)
T cd04615 67 PVITIDANDSIAKARWLMSNNNISRLPVLDDK-GKVGGIVTEDDILR 112 (113)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCeeeEECCC-CeEEEEEEHHHhhc
Confidence 57778889999999999999999999999855 68999999999863
No 112
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=93.65 E-value=0.12 Score=50.40 Aligned_cols=62 Identities=16% Similarity=0.319 Sum_probs=57.6
Q ss_pred hhhccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHH
Q 024154 152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILI 213 (271)
Q Consensus 152 l~~~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~i 213 (271)
|...++-|+|=.-.+++.+|.+.+++++...+.++|+.--|+++....+++|+++..|++..
T Consensus 188 l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~ 249 (408)
T TIGR03520 188 FGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPH 249 (408)
T ss_pred cCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhH
Confidence 46889999997778999999999999999999999999999999888999999999999853
No 113
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=93.60 E-value=0.16 Score=38.59 Aligned_cols=54 Identities=20% Similarity=0.428 Sum_probs=44.5
Q ss_pred cccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154 156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (271)
Q Consensus 156 tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~ 212 (271)
.+.+++. ...++++.+.++.+|+..|.+++....|+=|.. +.++|++|..|+++
T Consensus 54 ~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~di~~ 107 (108)
T cd04596 54 TIEKVMT--KNPITVNPKTSVASVAHMMIWEGIEMLPVVDDN-KKLLGIISRQDVLK 107 (108)
T ss_pred cHHHHhc--CCCeEECCCCCHHHHHHHHHHcCCCeeeEEcCC-CCEEEEEEHHHhhc
Confidence 3444443 357789999999999999999999999998854 68999999999874
No 114
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=93.59 E-value=0.12 Score=40.81 Aligned_cols=53 Identities=26% Similarity=0.532 Sum_probs=44.3
Q ss_pred cccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154 156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (271)
Q Consensus 156 tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~ 212 (271)
++-+++.. ..+.++.+.++..|+..+.+++...+|+-|. +.++|++|..|++.
T Consensus 79 ~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~--~~~iGvit~~dl~~ 131 (132)
T cd04636 79 KVEEIMTK--KVITVDEDTTIEDVARIMSKKNIKRLPVVDD--GKLVGIISRGDIIR 131 (132)
T ss_pred CHHHhccC--CceEECCCCcHHHHHHHHHHCCCCeeEEEEC--CEEEEEEEHHHhhc
Confidence 44444432 4678899999999999999999999999987 88999999999874
No 115
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=93.56 E-value=0.15 Score=38.90 Aligned_cols=46 Identities=20% Similarity=0.386 Sum_probs=40.7
Q ss_pred CCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHH
Q 024154 165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFI 211 (271)
Q Consensus 165 ~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i 211 (271)
..+.++.-+.++..|+..|.+++...+|+.|.. ++++|++|..|++
T Consensus 66 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~di~ 111 (113)
T cd04607 66 RNPITAKVGSSREEILALMRERSIRHLPILDEE-GRVVGLATLDDLL 111 (113)
T ss_pred CCCEEEcCCCCHHHHHHHHHHCCCCEEEEECCC-CCEEEEEEhHHhc
Confidence 346788899999999999999999999999854 7899999999986
No 116
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=93.47 E-value=0.15 Score=39.07 Aligned_cols=48 Identities=19% Similarity=0.364 Sum_probs=42.5
Q ss_pred CCeEEEcccchHHHHHHHHHHcCCCeeccccCC-CCceeeeechHHHHH
Q 024154 165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDF-KGRFVGVLSALDFIL 212 (271)
Q Consensus 165 ~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~-~~~f~G~lt~tD~i~ 212 (271)
...+++..+.++.+|+..|.+++...+|+.|.. .+.++|++|.+|+++
T Consensus 66 ~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~ 114 (115)
T cd04593 66 PPLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL 114 (115)
T ss_pred CCceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence 357788889999999999999999999999876 368999999999875
No 117
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=93.46 E-value=0.2 Score=38.04 Aligned_cols=47 Identities=23% Similarity=0.436 Sum_probs=41.7
Q ss_pred eEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHH
Q 024154 167 VTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILIL 214 (271)
Q Consensus 167 ~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il 214 (271)
.+++..+.++..|+..+.+.++...|+.|.. ++++|++|..|++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~-~~~~G~v~~~dl~~~~ 49 (113)
T cd04615 3 PSCVVLNTDIARAVAEMYTSGSRALPVVDDK-KRLVGIITRYDVLSYA 49 (113)
T ss_pred CEEeeCCCcHHHHHHHHHHcCCceEeEEcCC-CCEEEEEEHHHHHHhh
Confidence 5677889999999999999999999999874 7899999999998754
No 118
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=93.41 E-value=0.23 Score=39.41 Aligned_cols=50 Identities=18% Similarity=0.386 Sum_probs=43.4
Q ss_pred CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHH
Q 024154 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRE 216 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~ 216 (271)
+++.+.-+.++.+|+..|.++++...|+-|.+ ++++|++|..|++..+..
T Consensus 3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~-~~~~Gii~~~dl~~~~~~ 52 (124)
T cd04608 3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDES-GKILGMVTLGNLLSSLSS 52 (124)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHHHHHH
Confidence 46778889999999999999999999998865 689999999999986553
No 119
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=93.40 E-value=0.18 Score=39.68 Aligned_cols=46 Identities=20% Similarity=0.474 Sum_probs=41.2
Q ss_pred CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~ 212 (271)
+.+.+..+.++.+|+..|.++++..+|+=|.. ++++|++|..|+..
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~ 47 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSD-DNFIGVITAVDLLG 47 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCC-CcEEEEEEHHHHhh
Confidence 45778899999999999999999999999965 78999999999986
No 120
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=93.39 E-value=0.22 Score=37.75 Aligned_cols=46 Identities=22% Similarity=0.390 Sum_probs=40.6
Q ss_pred CCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154 165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (271)
Q Consensus 165 ~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~ 212 (271)
++++++..+.++..|+..|.+++...+++-|. ++++|++|..|++.
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~ 46 (113)
T cd04587 1 TKPATVSPTTTVQEAAKLMREKRVSCVLVMDG--NKLVGIFTSKDIAL 46 (113)
T ss_pred CCCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHH
Confidence 35678889999999999999999888888885 89999999999985
No 121
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=93.37 E-value=0.092 Score=41.31 Aligned_cols=40 Identities=20% Similarity=0.215 Sum_probs=35.1
Q ss_pred cchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154 173 NLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (271)
Q Consensus 173 ~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~ 212 (271)
+-++..|+..|.++++..+|+-|.+.++++|++|..|+++
T Consensus 86 ~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 86 NASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred cCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence 4578899999999999999999876457999999999875
No 122
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=93.29 E-value=0.23 Score=38.17 Aligned_cols=48 Identities=17% Similarity=0.346 Sum_probs=41.8
Q ss_pred CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHH
Q 024154 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILIL 214 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il 214 (271)
+.++++.+.++.+|+..|.+++...+++=|. .++++|++|..|++++.
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~-~~~~~G~v~~~dl~~~~ 49 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDE-ENKVLGQVTLSDLLEIG 49 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcC-CCCEEEEEEHHHHHhhc
Confidence 5678899999999999999999988888774 58999999999998753
No 123
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=93.27 E-value=0.16 Score=39.35 Aligned_cols=46 Identities=15% Similarity=0.261 Sum_probs=41.0
Q ss_pred CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~ 212 (271)
+++.+..+.++.+|+..|.++++..+|+=|.. +.++|++|..|++.
T Consensus 74 ~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~-~~~~Givt~~di~~ 119 (120)
T cd04641 74 GVRTCSPDDCLRTIFDLIVKARVHRLVVVDEN-KRVEGIISLSDILQ 119 (120)
T ss_pred CCeEEcCCCcHHHHHHHHHhcCccEEEEECCC-CCEEEEEEHHHhhc
Confidence 56788888999999999999999999998865 78999999999874
No 124
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=93.25 E-value=0.12 Score=39.44 Aligned_cols=46 Identities=20% Similarity=0.360 Sum_probs=38.3
Q ss_pred CeEEEcc--cchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154 166 KVTALDV--NLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (271)
Q Consensus 166 k~vv~D~--~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~ 212 (271)
.++.+.. ..++.+|+..|.+++...+|+=|.+ +.++||+|..|+++
T Consensus 67 ~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~-~~~~Gvit~~dl~~ 114 (115)
T cd04620 67 PVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQ-GQLIGLVTAESIRQ 114 (115)
T ss_pred CcEEEecccccCHHHHHHHHHHhCCceEEEEcCC-CCEEEEEEhHHhhc
Confidence 3445543 3789999999999999999998865 78999999999985
No 125
>PLN02960 alpha-amylase
Probab=93.12 E-value=0.11 Score=55.49 Aligned_cols=53 Identities=28% Similarity=0.512 Sum_probs=40.7
Q ss_pred EEEEecCCCceEEEEeccCCCCCCC-CCC-----CCCCCCCeEEEEEe--cCCce-------EEEEEEEc
Q 024154 23 VRFIWPNGGRRVSLSGSFTRWSEPM-PMS-----PSEGCPAVFQIICR--LPPGH-------HQYKFYVD 77 (271)
Q Consensus 23 VtF~w~~~ak~V~V~GsF~nW~~~i-pM~-----k~~~~~g~f~~~~~--LppG~-------yeYKFiVD 77 (271)
.-..|..+|+.++|+|+||||.++. .|. +++ -|+|.++++ |..|. -||.|..|
T Consensus 131 ~~~~wap~a~~~~~~gdfn~w~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (897)
T PLN02960 131 DFMEWAPGARYCSLVGDFNNWSPTENRAREGYFGHDD--FGYWFIILEDKLREGEEPDELYFQEYNYVDD 198 (897)
T ss_pred EEEEEcCCceeEEEeecccCCCcccchhhcccccccc--cceEEEEechhhhcCCCcchhhhhhhccccc
Confidence 3457899999999999999999863 555 554 689999986 76652 46778775
No 126
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=93.06 E-value=0.21 Score=37.82 Aligned_cols=44 Identities=18% Similarity=0.484 Sum_probs=40.4
Q ss_pred CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHH
Q 024154 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFI 211 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i 211 (271)
++++++.+.++++|+..|.+++...+|+-|. ++|+|++|..|.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~i~~~~l~ 45 (113)
T cd04622 2 DVVTVSPDDTIREAARLMREHDVGALPVCEN--DRLVGIVTDRDIV 45 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC--CEEEEEEEhHHHH
Confidence 4678899999999999999999999999987 9999999999976
No 127
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=93.05 E-value=0.15 Score=41.26 Aligned_cols=52 Identities=23% Similarity=0.504 Sum_probs=43.4
Q ss_pred ccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154 157 VYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (271)
Q Consensus 157 cYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~ 212 (271)
+-+++.. ..+.++-+.++.+|+..|.+++...+|+.+. +.++|++|..|++.
T Consensus 91 v~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~--~~~~Gvvt~~dl~~ 142 (143)
T cd04634 91 VRDIMTK--KVITISPDASIEDAAELMVRHKIKRLPVVED--GRLVGIVTRGDIIE 142 (143)
T ss_pred HHHHcCC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHhhc
Confidence 4444432 5778888888999999999999999999987 78999999999874
No 128
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=93.02 E-value=0.18 Score=38.10 Aligned_cols=48 Identities=19% Similarity=0.324 Sum_probs=41.8
Q ss_pred CCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154 165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (271)
Q Consensus 165 ~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~ 212 (271)
.+...++.+.++.+|+..+..++...+|+-|...+.++|++|..|++.
T Consensus 66 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 66 KPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113 (114)
T ss_pred CCCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence 357788899999999999999999999998763578999999999874
No 129
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=92.88 E-value=0.22 Score=38.40 Aligned_cols=47 Identities=23% Similarity=0.486 Sum_probs=41.3
Q ss_pred CCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154 165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (271)
Q Consensus 165 ~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~ 212 (271)
...+.++.+.++.+|+..|.+++...+|+.|.. ++++|++|..|++.
T Consensus 75 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~dl~~ 121 (122)
T cd04803 75 TDVLTVTPDTPLREAAEIMVENKIGCLPVVDDK-GTLVGIITRSDFLR 121 (122)
T ss_pred CCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCC-CCEEEEEEHHHhhc
Confidence 356788889999999999999999999999875 58999999999874
No 130
>PLN02950 4-alpha-glucanotransferase
Probab=92.79 E-value=0.9 Score=49.05 Aligned_cols=68 Identities=21% Similarity=0.437 Sum_probs=50.7
Q ss_pred CCcceEEEEEecC----CCceEEEEeccC---CCCCC--CCCCCCCCCCCeEEEEEecCCc--eEEEEEEE---cC--ee
Q 024154 17 GSILVPVRFIWPN----GGRRVSLSGSFT---RWSEP--MPMSPSEGCPAVFQIICRLPPG--HHQYKFYV---DG--EW 80 (271)
Q Consensus 17 ~~~~vpVtF~w~~----~ak~V~V~GsF~---nW~~~--ipM~k~~~~~g~f~~~~~LppG--~yeYKFiV---DG--~W 80 (271)
....++|+|+... .+++|+|+|+-. +|++. .+|.... ...|++++.++++ ..+|||++ +| .|
T Consensus 149 ~~~~v~V~F~v~~~~~~~Gq~v~VvGs~~eLGnW~~~~a~~Ls~~~--~p~W~~~v~lp~~~~~~EYKyv~~~~~g~v~W 226 (909)
T PLN02950 149 APDEIVVRFKIACPRLEEGTSVYVTGSIAQLGNWQVDDGLKLNYTG--DSIWEADCLVPKSDFPIKYKYALQTAEGLVSL 226 (909)
T ss_pred CCCceeEEEEEecCccCCCCeEEEEechhhcCCCCcccccccccCC--CCcEEEEEEecCCCceEEEEEEEEcCCCceEE
Confidence 3456889999864 478999999876 89864 5676533 6789999999987 49999998 34 46
Q ss_pred ecCCCC
Q 024154 81 RHDENQ 86 (271)
Q Consensus 81 ~~Dp~~ 86 (271)
-..++.
T Consensus 227 E~g~NR 232 (909)
T PLN02950 227 ELGVNR 232 (909)
T ss_pred eeCCCc
Confidence 544443
No 131
>PLN02950 4-alpha-glucanotransferase
Probab=92.73 E-value=0.91 Score=49.02 Aligned_cols=61 Identities=26% Similarity=0.469 Sum_probs=45.3
Q ss_pred CCCcceEEEEEecC---CCceEEEEeccC---CCCCC--CCCCCCC-CCCCeEEEEEecCCc-eEEEEEEE
Q 024154 16 VGSILVPVRFIWPN---GGRRVSLSGSFT---RWSEP--MPMSPSE-GCPAVFQIICRLPPG-HHQYKFYV 76 (271)
Q Consensus 16 ~~~~~vpVtF~w~~---~ak~V~V~GsF~---nW~~~--ipM~k~~-~~~g~f~~~~~LppG-~yeYKFiV 76 (271)
+.+..+.|+|.-++ -|++|.|+|+-. +|... ++|+... .....|++++.|++| ..+|||++
T Consensus 4 ~~~~~V~V~F~i~y~T~~GQ~l~VvGs~~~LG~Wd~~kA~~Ls~~~~~d~~~W~~~v~lp~~~~ieYKYv~ 74 (909)
T PLN02950 4 KSLKSVTLSFRIPYYTQWGQSLLVCGSEPLLGSWNVKKGLLLSPVHQGDELVWEGSVSVPEGFSCEYSYYV 74 (909)
T ss_pred CCCCcEEEEEEeEEecCCCCeEEEEecchhcCCCCcccceecccccCCCCCeEEEEEEecCCCeEEEEEEE
Confidence 34455778888775 489999999885 68754 6886532 113489999999987 59999995
No 132
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=92.73 E-value=0.21 Score=38.26 Aligned_cols=45 Identities=24% Similarity=0.460 Sum_probs=40.4
Q ss_pred CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~ 212 (271)
..+.++.+.++.+|+..|.+++...+|+-|. ++++|++|..|+++
T Consensus 76 ~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~--~~~~Gvv~~~di~~ 120 (121)
T cd04584 76 DVITVHPLDTVEEAALLMREHRIGCLPVVED--GRLVGIITETDLLR 120 (121)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCeEEEeeC--CEEEEEEEHHHhhc
Confidence 5678899999999999999999998999875 88999999999874
No 133
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=92.69 E-value=0.22 Score=37.78 Aligned_cols=46 Identities=22% Similarity=0.330 Sum_probs=40.5
Q ss_pred CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~ 212 (271)
..+++..+.++.+|+..|.++++..+|+.|.. +.++|++|..|+++
T Consensus 66 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~-g~~~Gilt~~dl~~ 111 (112)
T cd04624 66 DLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKG-GELVGVISIRDLVR 111 (112)
T ss_pred CCEEECCCCcHHHHHHHHHHcCccEEEEEcCC-CcEEEEEEHHHhcc
Confidence 47778888889999999999999999999875 78999999999874
No 134
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=92.68 E-value=0.29 Score=36.66 Aligned_cols=48 Identities=10% Similarity=0.137 Sum_probs=40.9
Q ss_pred CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHH
Q 024154 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILIL 214 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il 214 (271)
..+.++.+.++..|+..|.++++...++-|.. ++++|++|..|++...
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~-g~~~Giv~~~dl~~~~ 49 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDAD-GQPLGFVTRREAARAS 49 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECCC-CCEEEEEeHHHHHHhc
Confidence 45677888999999999999998888888764 8999999999998753
No 135
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=92.66 E-value=0.2 Score=37.92 Aligned_cols=46 Identities=20% Similarity=0.395 Sum_probs=40.7
Q ss_pred CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~ 212 (271)
..+.++-+.++.+|+.+|.+++...+|+=|.+ ++++|++|..|++.
T Consensus 65 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~dl~~ 110 (111)
T cd04639 65 DFPTVSPSATLDAVLRLMQQGGAPAVPVVDGS-GRLVGLVTLENVGE 110 (111)
T ss_pred CCcEECCCCcHHHHHHHHHhcCCceeeEEcCC-CCEEEEEEHHHhhc
Confidence 56788999999999999999999999998754 78999999999864
No 136
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=92.65 E-value=0.24 Score=37.43 Aligned_cols=47 Identities=21% Similarity=0.349 Sum_probs=41.6
Q ss_pred CCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154 165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (271)
Q Consensus 165 ~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~ 212 (271)
...+.++.+.++.+|+..|.++++...|+.|.. ++++|++|..|++.
T Consensus 63 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~G~i~~~dl~~ 109 (110)
T cd04588 63 KDVITIDEDEQLYDAIRLMNKHNVGRLIVTDDE-GRPVGIITRTDILR 109 (110)
T ss_pred CCceEECCCCCHHHHHHHHHhcCCCEEEEECCC-CCEEEEEEhHHhhc
Confidence 377889999999999999999999999999764 68999999999874
No 137
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=92.63 E-value=0.21 Score=38.53 Aligned_cols=46 Identities=24% Similarity=0.452 Sum_probs=41.5
Q ss_pred CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~ 212 (271)
.++.+..+.++.+|+..|.++++...|+.|. .++++|++|..|++.
T Consensus 78 ~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~-~g~~~Gvit~~di~~ 123 (124)
T cd04600 78 PVVTVRPDTPIAELVPLLADGGHHHVPVVDE-DRRLVGIVTQTDLIA 123 (124)
T ss_pred CCeeeCCCCcHHHHHHHHHhcCCCceeEEcC-CCCEEEEEEhHHhhc
Confidence 5778889999999999999999999999996 578999999999874
No 138
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=92.58 E-value=0.2 Score=39.27 Aligned_cols=45 Identities=24% Similarity=0.434 Sum_probs=40.4
Q ss_pred CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHH
Q 024154 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFI 211 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i 211 (271)
++.++.-+.++++|+..|.++++...|+-|.+ ++++||+|..|+.
T Consensus 67 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-~~l~Givt~~dl~ 111 (113)
T cd04597 67 KPVTARPNDPLREALNLMHEHNIRTLPVVDDD-GTPAGIITLLDLA 111 (113)
T ss_pred CCCEECCcCcHHHHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHhh
Confidence 57778889999999999999999999999975 6799999999975
No 139
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=92.52 E-value=0.33 Score=37.05 Aligned_cols=48 Identities=19% Similarity=0.376 Sum_probs=40.2
Q ss_pred CeEEEcccchHHHHHHHHHHcC-CCeeccccCCCCceeeeechHHHHHHHH
Q 024154 166 KVTALDVNLAVKQAFHVLYEQG-LPMVPLWDDFKGRFVGVLSALDFILILR 215 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g-~~~aplwds~~~~f~G~lt~tD~i~il~ 215 (271)
+.++++.+.++..|...+.+++ ....++=|. ++++|++|..|++..+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~ 50 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVEK--GRLLGIFTERDIVRLTA 50 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcCC--CcEEEEEeHHHHHHHHh
Confidence 4567889999999999998888 667777773 78999999999987653
No 140
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=92.51 E-value=0.31 Score=37.27 Aligned_cols=48 Identities=21% Similarity=0.253 Sum_probs=42.2
Q ss_pred eEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154 167 VTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR 215 (271)
Q Consensus 167 ~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~ 215 (271)
..+++.+.++.+|...|.+.++..+|+-|.. ++++|+++..|+.+.+.
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~ 50 (115)
T cd04593 3 PPVLSATTPLREAAEQLIESKHGSALVVDRD-GGVVGIITLPDLLRALE 50 (115)
T ss_pred CcEeCCCCCHHHHHHHHHhCCCcEEEEEcCC-CCEEEEEEHHHHHHHHh
Confidence 4577889999999999999999999999875 78999999999998664
No 141
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=92.48 E-value=0.24 Score=38.75 Aligned_cols=55 Identities=22% Similarity=0.286 Sum_probs=45.3
Q ss_pred cccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccC-CCCceeeeechHHHHH
Q 024154 156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDD-FKGRFVGVLSALDFIL 212 (271)
Q Consensus 156 tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds-~~~~f~G~lt~tD~i~ 212 (271)
.+.+++. .+++++..+.++.+|+..|.+++...+|+=+. +.+.++|++|..|++.
T Consensus 72 ~~~~~~~--~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~ 127 (128)
T cd04632 72 PVYDAMS--SPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR 127 (128)
T ss_pred cHHHHhc--CCCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence 4666654 36888999999999999999999988888653 5688999999999874
No 142
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=92.37 E-value=0.38 Score=36.66 Aligned_cols=49 Identities=20% Similarity=0.287 Sum_probs=42.7
Q ss_pred CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR 215 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~ 215 (271)
|-++++.+.++..|...|.++++..+++-|.. ++++|++|..|++..+.
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~ 51 (113)
T cd04607 3 KQLLVSPDASILDALRKIDKNALRIVLVVDEN-GRLLGTVTDGDIRRALL 51 (113)
T ss_pred cceEECCCCCHHHHHHHHHhcCcCEEEEECCC-CCEEEEEEcHHHHHHHh
Confidence 56788999999999999999999999988874 78999999999987553
No 143
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=92.35 E-value=0.91 Score=44.96 Aligned_cols=48 Identities=17% Similarity=0.431 Sum_probs=44.1
Q ss_pred CCeEEEcccchHHHHHHHHHHcCCCeeccccCCC--CceeeeechHHHHH
Q 024154 165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFK--GRFVGVLSALDFIL 212 (271)
Q Consensus 165 ~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~--~~f~G~lt~tD~i~ 212 (271)
.+++.++.+.++.+|+..|.++++...|+-|... .+++|++|..|++.
T Consensus 88 ~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~ 137 (450)
T TIGR01302 88 SDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRF 137 (450)
T ss_pred cCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhh
Confidence 4789999999999999999999999999999865 79999999999874
No 144
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=92.34 E-value=0.28 Score=37.47 Aligned_cols=49 Identities=18% Similarity=0.305 Sum_probs=41.1
Q ss_pred CeEEEcccchHHHHHHHHHHcC-CCeeccccCCCCceeeeechHHHHHHHH
Q 024154 166 KVTALDVNLAVKQAFHVLYEQG-LPMVPLWDDFKGRFVGVLSALDFILILR 215 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g-~~~aplwds~~~~f~G~lt~tD~i~il~ 215 (271)
++..+..+.++++|+..|.+++ ...+|+-|. .++++|++|..|++..+.
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~dl~~~~~ 51 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDN-EGRYVGIISLADLRAIPT 51 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcC-CCcEEEEEEHHHHHHHHH
Confidence 4567889999999999988775 888998885 478999999999987654
No 145
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=92.20 E-value=0.37 Score=36.93 Aligned_cols=49 Identities=20% Similarity=0.392 Sum_probs=42.7
Q ss_pred CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR 215 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~ 215 (271)
++.+++.+.++..|...+.+++....|+-|.. ++++|+++..|++..+.
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~ 50 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEE-GRLVGIVTDRDLRDASP 50 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCC-CcEEEEEEHHHHHHHhh
Confidence 46788889999999999999999899999885 88999999999876543
No 146
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=92.19 E-value=0.28 Score=37.92 Aligned_cols=46 Identities=24% Similarity=0.465 Sum_probs=41.4
Q ss_pred CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~ 212 (271)
++++++-+.++.+++..+.+++...+|+=|.. +.++||+|..|+++
T Consensus 79 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~-~~~~Gvit~~di~~ 124 (125)
T cd04631 79 NVITITPDDSIKDAAELMLEKRVGGLPVVDDD-GKLVGIVTERDLLK 124 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCceEEEEcCC-CcEEEEEEHHHhhc
Confidence 58899999999999999999999999998754 78999999999875
No 147
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=92.13 E-value=0.34 Score=36.24 Aligned_cols=46 Identities=20% Similarity=0.445 Sum_probs=40.4
Q ss_pred CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~ 212 (271)
..+.++.+.++..|+..+.+++...+|+.|.. ++++|++|..|++.
T Consensus 61 ~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-g~~~Gvi~~~di~~ 106 (107)
T cd04610 61 DLVVAVPEMDIMDAARVMFRTGISKLPVVDEN-NNLVGIITNTDVIR 106 (107)
T ss_pred CCeEECCCCCHHHHHHHHHHhCCCeEeEECCC-CeEEEEEEHHHhhc
Confidence 46778888899999999999999999999865 68999999999874
No 148
>PLN02316 synthase/transferase
Probab=92.01 E-value=0.76 Score=50.18 Aligned_cols=59 Identities=14% Similarity=0.287 Sum_probs=45.1
Q ss_pred eEEEEEecC------CCceEEEEeccCCCCCCC----CCCCCC-CCCCeEEEEEecCCceEEEEEEE-cCe
Q 024154 21 VPVRFIWPN------GGRRVSLSGSFTRWSEPM----PMSPSE-GCPAVFQIICRLPPGHHQYKFYV-DGE 79 (271)
Q Consensus 21 vpVtF~w~~------~ak~V~V~GsF~nW~~~i----pM~k~~-~~~g~f~~~~~LppG~yeYKFiV-DG~ 79 (271)
.+|++.|+. ++.+|+|.|.||+|+... .|.+.+ +.+++|+.++.+|+.-|-.-|+. ||.
T Consensus 329 ~~v~lyYN~~~~~L~~~~~v~i~gg~N~W~~~~~~~~~~~~~~~~~g~ww~a~v~vP~~A~~mDfVFsdg~ 399 (1036)
T PLN02316 329 DTVKLYYNRSSGPLAHSTEIWIHGGYNNWIDGLSIVEKLVKSEEKDGDWWYAEVVVPERALVLDWVFADGP 399 (1036)
T ss_pred CEEEEEECCCCCCCCCCCcEEEEEeEcCCCCCCcccceeecccCCCCCEEEEEEecCCCceEEEEEEecCC
Confidence 578888873 468999999999998632 233333 23458999999999999999998 773
No 149
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=92.00 E-value=0.42 Score=36.21 Aligned_cols=49 Identities=14% Similarity=0.297 Sum_probs=42.4
Q ss_pred CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR 215 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~ 215 (271)
++++++.+.+++.|+..+.+++....|+-|. .++++|+++..|++....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~~G~v~~~dl~~~~~ 50 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDN-EEKLKGVVTFTDILDLDL 50 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcC-CCCEEEEEehHHhHHHHh
Confidence 5678899999999999999999988998876 478999999999987543
No 150
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=91.91 E-value=0.26 Score=37.31 Aligned_cols=45 Identities=16% Similarity=0.371 Sum_probs=40.0
Q ss_pred CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~ 212 (271)
..+.++.+.++..|+..|.+++...+|+=| .++++|++|..|+++
T Consensus 59 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~--~~~~iGvit~~dl~~ 103 (104)
T cd04594 59 GIPYVRLTSTAEEAWEVMMKNKTRWCPVVD--DGKFKGIVTLDSILD 103 (104)
T ss_pred CCcEEcCCCCHHHHHHHHHHcCcceEEEEE--CCEEEEEEEHHHhhc
Confidence 467889999999999999999999888887 489999999999874
No 151
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=91.88 E-value=0.26 Score=37.81 Aligned_cols=45 Identities=16% Similarity=0.326 Sum_probs=40.1
Q ss_pred CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~ 212 (271)
..+.++.+.++.+|+..|.+++...+|+= +.++++|++|..|++.
T Consensus 60 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVv--~~~~~~Gvvt~~dl~~ 104 (105)
T cd04591 60 SPFTVSPRTSLEKVHQLFRKLGLRHLLVV--DEGRLVGIITRKDLLK 104 (105)
T ss_pred CCceECCCCcHHHHHHHHHHcCCCEEEEE--ECCeEEEEEEhhhhhc
Confidence 57788999999999999999999999886 4689999999999874
No 152
>COG0517 FOG: CBS domain [General function prediction only]
Probab=91.84 E-value=0.27 Score=37.38 Aligned_cols=46 Identities=24% Similarity=0.526 Sum_probs=42.8
Q ss_pred CeEEEcccchHHHHHHHHHH-cCCCeeccccCCCCceeeeechHHHH
Q 024154 166 KVTALDVNLAVKQAFHVLYE-QGLPMVPLWDDFKGRFVGVLSALDFI 211 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~-~g~~~aplwds~~~~f~G~lt~tD~i 211 (271)
.++..+.+.++..|...+.+ +++...|+=|.+..+++|++|.+|++
T Consensus 71 ~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~ 117 (117)
T COG0517 71 PVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL 117 (117)
T ss_pred CcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence 78899999999999999999 69999999998877999999999974
No 153
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=91.78 E-value=0.41 Score=37.81 Aligned_cols=50 Identities=24% Similarity=0.400 Sum_probs=43.4
Q ss_pred CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHH
Q 024154 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRE 216 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~ 216 (271)
.++++..+.++++|+..|.++++...|+-|.. ++++|+++..|++..+..
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~-~~~~G~i~~~~l~~~~~~ 51 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNE-GRVVGIVSEGDLIRKIYK 51 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECCC-CCEEEEEeHHHHHHHHhc
Confidence 35678899999999999999999999998874 789999999999987653
No 154
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=91.71 E-value=0.38 Score=37.09 Aligned_cols=46 Identities=20% Similarity=0.442 Sum_probs=41.0
Q ss_pred CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~ 212 (271)
+.++++-+.++.+|+..+.++++..+|+.|.. +.++|++|..|+++
T Consensus 76 ~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~-~~~~Gvit~~dll~ 121 (122)
T cd04637 76 DPITVSPDTPVDEASKLLLENSISCLPVVDEN-GQLIGIITWKDLLK 121 (122)
T ss_pred CCeeeCCCCcHHHHHHHHHHcCCCeEeEECCC-CCEEEEEEHHHhhh
Confidence 57788999999999999999999999998765 68999999999874
No 155
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=91.69 E-value=0.39 Score=50.19 Aligned_cols=55 Identities=22% Similarity=0.441 Sum_probs=39.7
Q ss_pred EEEEEe-cCCCceEEEEeccCCCCC----CCCCCCCCCCCCeEEEEEe-cCCceEEEEEEEcCee
Q 024154 22 PVRFIW-PNGGRRVSLSGSFTRWSE----PMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGEW 80 (271)
Q Consensus 22 pVtF~w-~~~ak~V~V~GsF~nW~~----~ipM~k~~~~~g~f~~~~~-LppG~yeYKFiVDG~W 80 (271)
-++|+. ...|++|.|+ -|+++.. .++|.+.. .|+|++.+. +.+|. .|+|.|+|.|
T Consensus 15 g~~F~vwap~A~~V~L~-l~~~~~~~~~~~~~m~~~~--~gvW~~~v~~~~~g~-~Y~yrv~g~~ 75 (688)
T TIGR02100 15 GVNFALFSANAEKVELC-LFDAQGEKEEARLPLPERT--DDIWHGYLPGAQPGQ-LYGYRVHGPY 75 (688)
T ss_pred cEEEEEECCCCCEEEEE-EEcCCCCceeeEEecccCC--CCEEEEEECCCCCCC-EEEEEEeeee
Confidence 467755 5679999987 4555432 35888754 689999986 66776 5999999853
No 156
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=91.63 E-value=0.38 Score=35.38 Aligned_cols=46 Identities=26% Similarity=0.550 Sum_probs=40.5
Q ss_pred CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~ 212 (271)
..+.+..+.++..|+..|.+++...+|+=|.. ++++|++|..|++.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~G~i~~~dl~~ 112 (113)
T cd02205 67 DVVTVSPDTSLEEAAELMLEHGIRRLPVVDDE-GRLVGIVTRSDILR 112 (113)
T ss_pred CceecCCCcCHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEEHHHhhc
Confidence 46666788899999999999999999998887 78999999999874
No 157
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=91.58 E-value=0.38 Score=36.02 Aligned_cols=45 Identities=16% Similarity=0.347 Sum_probs=39.5
Q ss_pred eEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154 167 VTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (271)
Q Consensus 167 ~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~ 212 (271)
.++++.+.++..|+..|.++++..+|+=|.. ++++|++|..|+++
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~-~~~~Gvi~~~~l~~ 105 (106)
T cd04582 61 KVTVSVDDDLRIVLSRMFAHDMSWLPCVDED-GRYVGEVTQRSIAD 105 (106)
T ss_pred CEEECCCCCHHHHHHHHHHCCCCeeeEECCC-CcEEEEEEHHHhhc
Confidence 4568888899999999999999999998754 78999999999874
No 158
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=91.47 E-value=0.55 Score=35.13 Aligned_cols=48 Identities=8% Similarity=0.191 Sum_probs=41.9
Q ss_pred CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHH
Q 024154 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILIL 214 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il 214 (271)
+.++++.+.++..|...|.++++..+|+-|.. ++++|++|..|.++.+
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~ 50 (109)
T cd04583 3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDKD-NKLLGIVSLESLEQAY 50 (109)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCceEEEEcCC-CcEEEEEEHHHHHHHh
Confidence 45778899999999999999999999998864 7899999999998754
No 159
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=91.41 E-value=0.65 Score=35.59 Aligned_cols=51 Identities=20% Similarity=0.263 Sum_probs=45.1
Q ss_pred CeEEEcccchHHHHHHHHHHcCCCeeccccCC--CCceeeeechHHHHHHHHH
Q 024154 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDF--KGRFVGVLSALDFILILRE 216 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~--~~~f~G~lt~tD~i~il~~ 216 (271)
.+..++.+.++.+|...+.+++....|+-|.. .++++|+++..|+.+.+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~ 55 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN 55 (105)
T ss_pred ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH
Confidence 46788999999999999999998889999986 5899999999999987753
No 160
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=91.38 E-value=0.43 Score=36.07 Aligned_cols=45 Identities=22% Similarity=0.233 Sum_probs=40.0
Q ss_pred CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~ 212 (271)
|=+.+..+.++..|+..|.+++...+|+-|. ++++|+++..|+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~ 46 (104)
T cd04594 2 KDIKVKDYDKVYEAKRIMIENDLLSLPVVDY--NKFLGAVYLKDIEN 46 (104)
T ss_pred CceEECCCCCHHHHHHHHHHcCCcEEEEEEC--CEEEEEEEHHHHhh
Confidence 3467788999999999999999999999985 99999999999875
No 161
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=91.32 E-value=0.41 Score=36.77 Aligned_cols=47 Identities=17% Similarity=0.409 Sum_probs=41.9
Q ss_pred CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHH
Q 024154 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILI 213 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~i 213 (271)
+++++..+.++.+|+..|.++++..+|+-|. .+.++|++|..|+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~~ 48 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQK-AGELIGIITRRDIIRA 48 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEECC-CCcEEEEEEcHHHHhh
Confidence 4678899999999999999999999999885 5899999999999864
No 162
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=91.31 E-value=0.46 Score=38.27 Aligned_cols=48 Identities=19% Similarity=0.290 Sum_probs=41.7
Q ss_pred eEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154 167 VTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR 215 (271)
Q Consensus 167 ~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~ 215 (271)
++.+..+.++..|+..|.++++..+|+-|. .++++|++|..|++..+.
T Consensus 3 ~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~-~~~~~Giv~~~dl~~~~~ 50 (135)
T cd04621 3 IATVHPEHSLLHVVDEMEKNGVGRVIVVDD-NGKPVGVITYRDLAFAEF 50 (135)
T ss_pred ceEeCCCCcHHHHHHHHHHcCCCcceEECC-CCCEEEEEeHHHHHHHhh
Confidence 456677889999999999999999999985 589999999999998663
No 163
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=91.31 E-value=0.38 Score=36.22 Aligned_cols=46 Identities=26% Similarity=0.486 Sum_probs=40.0
Q ss_pred CCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154 165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (271)
Q Consensus 165 ~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~ 212 (271)
...++++.+.++++|+..+.+++...+|+=|. ++++|++|..|++.
T Consensus 60 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~--~~~~G~it~~d~~~ 105 (106)
T cd04638 60 RDPPTVSPDDDVKEAAKLMVENNIRRVPVVDD--GKLVGIVTVADIVR 105 (106)
T ss_pred CCCceECCCCCHHHHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHhhc
Confidence 35677788888999999999999999999884 58999999999874
No 164
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=91.31 E-value=0.53 Score=35.61 Aligned_cols=49 Identities=27% Similarity=0.370 Sum_probs=42.0
Q ss_pred CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR 215 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~ 215 (271)
+++++..+.++.+|...|.+++....|+-|.. ++++|++|..|++..+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~ 50 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDN-GNLVGFLSEQDCLKQLL 50 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECCC-CeEEEEeehHHHHHHhh
Confidence 46788899999999999999999888988864 67999999999987553
No 165
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=91.18 E-value=0.37 Score=36.93 Aligned_cols=46 Identities=17% Similarity=0.286 Sum_probs=37.4
Q ss_pred CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~ 212 (271)
..+....+-++.+|+..|.++++...|+=|.. +.++|++|..|++.
T Consensus 68 ~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~-~~~~Gvit~~di~~ 113 (114)
T cd04602 68 VLVVAPTGITLEEANEILRESKKGKLPIVNDD-GELVALVTRSDLKK 113 (114)
T ss_pred eEEECCCCCCHHHHHHHHHhcCCCceeEECCC-CeEEEEEEHHHhhc
Confidence 34444347788999999999999999998754 57999999999875
No 166
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=91.08 E-value=0.49 Score=45.09 Aligned_cols=68 Identities=16% Similarity=0.368 Sum_probs=59.6
Q ss_pred HHhHHHHHHhhhhccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154 142 QLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (271)
Q Consensus 142 ~~~~~~~~~fl~~~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~ 212 (271)
+..+..|+.=+.+-+|=|+|- -.||-.-++-++..|..-|.++++.+-|+-|.. .+.+|+.|.+|+..
T Consensus 232 ~~elqa~~R~~~~LtcadIMS--rdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~-~rl~GiVt~~dl~~ 299 (382)
T COG3448 232 ETELQALRRRMGELTCADIMS--RDVVTVSTDTSIDHARKLLQEHRIKALPVLDEH-RRLVGIVTQRDLLK 299 (382)
T ss_pred HHHHHHHHHHhccccHHHhcC--ccceecCCcCChHHHHHHHHHcCcccccccccc-cceeeeeeHHHHhh
Confidence 347778888889999999985 557788888899999999999999999999976 78999999999876
No 167
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=91.05 E-value=0.42 Score=38.52 Aligned_cols=45 Identities=22% Similarity=0.379 Sum_probs=40.4
Q ss_pred CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~ 212 (271)
.++.++-+.++.+|+..|.++++..+|+=|. ++++|+||..|++.
T Consensus 90 ~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~--~~~~Gvit~~di~~ 134 (135)
T cd04621 90 EIITVSPNDDVVDAAKLMLEANISGLPVVDN--DNIVGVITKTDICR 134 (135)
T ss_pred CCeEECCCCCHHHHHHHHHHcCCCEEEEEeC--CEEEEEEEHHHHhh
Confidence 5678889999999999999999999999876 78999999999874
No 168
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=91.04 E-value=0.45 Score=35.89 Aligned_cols=50 Identities=24% Similarity=0.400 Sum_probs=42.2
Q ss_pred CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHH
Q 024154 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRE 216 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~ 216 (271)
++.++..+.++..|...+.+.+....|+-|.. ++++|+++..|++..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~~i~~~~~~ 52 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDED-GRLVGIFTDGDLRRALEK 52 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEcCC-CCEEEEechHHHHHHHhc
Confidence 45567788899999999988888889988875 789999999999987754
No 169
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=90.99 E-value=0.5 Score=35.34 Aligned_cols=53 Identities=15% Similarity=0.409 Sum_probs=43.6
Q ss_pred ccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154 157 VYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (271)
Q Consensus 157 cYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~ 212 (271)
+-+++. .+.++++-+.++.+|+..+.+++...+|+=|.+ ++++|++|.+|+++
T Consensus 56 v~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~-g~~~Gvit~~~l~~ 108 (109)
T cd04583 56 LEDIML--EDVFTVQPDASLRDVLGLVLKRGPKYVPVVDED-GKLVGLITRSSLVD 108 (109)
T ss_pred HhHhhc--CCceEECCCCcHHHHHHHHHHcCCceeeEECCC-CeEEEEEehHHhhc
Confidence 444443 357788999999999999999999999998854 58999999999874
No 170
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=90.91 E-value=0.43 Score=36.53 Aligned_cols=47 Identities=19% Similarity=0.335 Sum_probs=40.7
Q ss_pred eEEEcccchHHHHHHHHHHcC-CCeeccccCCCCceeeeechHHHHHHHH
Q 024154 167 VTALDVNLAVKQAFHVLYEQG-LPMVPLWDDFKGRFVGVLSALDFILILR 215 (271)
Q Consensus 167 ~vv~D~~l~v~~Af~al~~~g-~~~aplwds~~~~f~G~lt~tD~i~il~ 215 (271)
+.++..+.++++|+..+.+++ +..+|+=|. +.++|+++..|+...+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~~l~~~~~ 50 (119)
T cd04598 3 APTVSPDTTVNDVLERFERDPDLSALAVVDD--GRPVGLIMREALMELLS 50 (119)
T ss_pred cCccCCCCcHHHHHHHHHhCCCccEEEEEEC--CeeEEEEEHHHHHHHHh
Confidence 456778889999999998887 888999998 89999999999987654
No 171
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=90.89 E-value=0.44 Score=36.10 Aligned_cols=45 Identities=20% Similarity=0.313 Sum_probs=40.1
Q ss_pred CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~ 212 (271)
++..+..+.++.+++..|.+++...+|+=|. ++++|++|..|++.
T Consensus 66 ~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~dl~~ 110 (111)
T cd04589 66 PLITVDPDDFLFNALLLMTRHRIHRVVVREG--GEVVGVLEQTDLLS 110 (111)
T ss_pred CcEEECCCCcHHHHHHHHHHhCccEEEEeeC--CEEEEEEEhHHhhc
Confidence 5777888899999999999999999999874 78999999999874
No 172
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=90.83 E-value=0.67 Score=34.77 Aligned_cols=54 Identities=22% Similarity=0.396 Sum_probs=44.0
Q ss_pred cccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154 156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (271)
Q Consensus 156 tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~ 212 (271)
.+.+++. ...+.+.-+.++.+|+..|.+++...+|+=|.. +.++|++|..|++.
T Consensus 57 ~v~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~-~~~~Gvi~~~di~~ 110 (111)
T cd04611 57 PVGEVMS--SPLLTVPADTSLYDARQLMREHGIRHLVVVDDD-GELLGLLSQTDLLQ 110 (111)
T ss_pred CHHHhcC--CCceEECCCCCHHHHHHHHHHcCCeEEEEECCC-CcEEEEEEhHHhhc
Confidence 3445443 357888889999999999999999889998864 68999999999875
No 173
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=90.74 E-value=0.64 Score=34.94 Aligned_cols=46 Identities=20% Similarity=0.330 Sum_probs=40.9
Q ss_pred CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~ 212 (271)
+++.++.+.++++|+..+.++++...|+-|.. ++++|+++..|++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~g~v~~~~l~~ 47 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKS-GELVGIITRKDLLR 47 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCC-CcEEEEEEHHHHHh
Confidence 57888989999999999999998889998876 78999999999874
No 174
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=90.61 E-value=0.63 Score=34.75 Aligned_cols=46 Identities=28% Similarity=0.469 Sum_probs=39.8
Q ss_pred CCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154 165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (271)
Q Consensus 165 ~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~ 212 (271)
.+++++..+.++.+|+..+.+++....|+-|. ++++|+++..|++.
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~--~~~~g~v~~~~l~~ 47 (107)
T cd04610 2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDN--GKVVGIVSARDLLG 47 (107)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhhc
Confidence 45788899999999999999888877888774 89999999999874
No 175
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=90.57 E-value=0.61 Score=51.31 Aligned_cols=66 Identities=12% Similarity=0.206 Sum_probs=47.5
Q ss_pred EEEE-ecCCCceEEEEe-ccCCCCC---CCCCCCCCCCCCeEEEEEe-cCCc-----eEEEEEEEcC----eeecCCCCC
Q 024154 23 VRFI-WPNGGRRVSLSG-SFTRWSE---PMPMSPSEGCPAVFQIICR-LPPG-----HHQYKFYVDG----EWRHDENQP 87 (271)
Q Consensus 23 VtF~-w~~~ak~V~V~G-sF~nW~~---~ipM~k~~~~~g~f~~~~~-LppG-----~yeYKFiVDG----~W~~Dp~~P 87 (271)
++|+ |...|++|.|++ ++++|.. .++|.+.+ .|+|++.+. +.+| -+.|+|.|++ ..+.||...
T Consensus 329 v~F~vWAP~A~~V~L~lyd~~~~~~~~~~~~m~~~~--~GvW~v~v~~~~~G~~d~~G~~Y~Y~V~~~~~~~~~~DPYA~ 406 (1111)
T TIGR02102 329 VTLKLWSPSADHVSVVLYDKDDQDKVVGTVELKKGD--RGVWEVQLTKENTGIDSLTGYYYHYEITRGGDKVLALDPYAK 406 (1111)
T ss_pred EEEEEECCCCCEEEEEEEeCCCCCCceeeEecccCC--CCEEEEEECCcccCcccCCCceEEEEEECCCceEEEeChhhe
Confidence 6675 567899999998 4455653 46898755 799999987 4432 4688888876 467888776
Q ss_pred eee
Q 024154 88 HVS 90 (271)
Q Consensus 88 ~v~ 90 (271)
.+.
T Consensus 407 al~ 409 (1111)
T TIGR02102 407 SLA 409 (1111)
T ss_pred EEe
Confidence 543
No 176
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=90.38 E-value=0.51 Score=35.70 Aligned_cols=45 Identities=22% Similarity=0.524 Sum_probs=39.7
Q ss_pred CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~ 212 (271)
.++++.-+.++.+|+..|.+++....|+=|.. .++|++|..|++.
T Consensus 67 ~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~--~~~Gvi~~~di~~ 111 (112)
T cd04802 67 PLITIDPNASLNEAAKLMAKHGIKRLPVVDDD--ELVGIVTTTDIVM 111 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeeEEeeCC--EEEEEEEhhhhhc
Confidence 57778889999999999999999889998754 8999999999873
No 177
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=89.85 E-value=0.78 Score=44.76 Aligned_cols=65 Identities=20% Similarity=0.302 Sum_probs=54.4
Q ss_pred HHHhhhhccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154 148 ISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR 215 (271)
Q Consensus 148 ~~~fl~~~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~ 215 (271)
..++|+..++-|+|- .+++++..+.++.+|+..|.++++..+|+-|.. ++++||+|..|+...+.
T Consensus 328 ~~~~l~~~~v~~im~--~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~ 392 (454)
T TIGR01137 328 VFDVLKNATVKDLHL--PAPVTVHPTETVGDAIEILREYGFDQLPVVTEA-GKVLGSVTLRELLSALF 392 (454)
T ss_pred HHHHhccCCHHHhCc--CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHHh
Confidence 445577788888773 468889999999999999999999999998854 78999999999988554
No 178
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=89.85 E-value=0.75 Score=34.77 Aligned_cols=46 Identities=24% Similarity=0.305 Sum_probs=40.9
Q ss_pred CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~ 212 (271)
++++++.+.++++|...+.+++....|+-|. .++++|+++..|...
T Consensus 3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~ 48 (108)
T cd04596 3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDE-KNKVVGIVTSKDVAG 48 (108)
T ss_pred ccEEeCCCCCHHHHHHHHHHcCCCceeEECC-CCeEEEEecHHHHhc
Confidence 4678899999999999999999989999885 588999999999874
No 179
>PRK03705 glycogen debranching enzyme; Provisional
Probab=89.55 E-value=0.67 Score=48.26 Aligned_cols=54 Identities=20% Similarity=0.362 Sum_probs=39.7
Q ss_pred EEEEE-ecCCCceEEEEeccCCCC--CCCCCCCCCCCCCeEEEEEe-cCCceEEEEEEEcCe
Q 024154 22 PVRFI-WPNGGRRVSLSGSFTRWS--EPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGE 79 (271)
Q Consensus 22 pVtF~-w~~~ak~V~V~GsF~nW~--~~ipM~k~~~~~g~f~~~~~-LppG~yeYKFiVDG~ 79 (271)
-|+|+ |...|++|.|+. |+++. ..++|.+.+ .|+|++.+. +.+|. .|+|.|+|.
T Consensus 20 g~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~~--~gvW~~~v~~~~~G~-~Y~yrv~g~ 77 (658)
T PRK03705 20 GVNFTLFSAHAERVELCV-FDENGQEQRYDLPARS--GDIWHGYLPGARPGL-RYGYRVHGP 77 (658)
T ss_pred CEEEEEECCCCCEEEEEE-EcCCCCeeeEeeeecc--CCEEEEEECCCCCCC-EEEEEEccc
Confidence 46775 566799999997 66542 246887654 689999987 55664 599999884
No 180
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=89.36 E-value=0.59 Score=35.47 Aligned_cols=44 Identities=23% Similarity=0.516 Sum_probs=36.2
Q ss_pred CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~ 212 (271)
..++++-+.++.+|+..|.+++ ..|+.|.. ++++|++|..|+++
T Consensus 72 ~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~-~~~~Gvit~~dil~ 115 (116)
T cd04643 72 DVPVIIDDADIEEILHLLIDQP--FLPVVDDD-GIFIGIITRREILK 115 (116)
T ss_pred CCceecCCCCHHHHHHHHhcCC--ceeEEeCC-CeEEEEEEHHHhhc
Confidence 4667788888999999999876 47888754 68999999999874
No 181
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=89.23 E-value=0.67 Score=43.24 Aligned_cols=53 Identities=13% Similarity=0.258 Sum_probs=46.0
Q ss_pred cccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154 156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (271)
Q Consensus 156 tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~ 212 (271)
++-|++.. .++.++.+.++.+|+..|.++++...|+-| .++++||+|.+|+++
T Consensus 270 ~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~--~~~lvGiit~~dil~ 322 (326)
T PRK10892 270 SIADVMTP--GGIRVRPGILAVDALNLMQSRHITSVLVAD--GDHLLGVLHMHDLLR 322 (326)
T ss_pred CHHHhcCC--CCEEECCCCCHHHHHHHHHHCCCcEEEEee--CCEEEEEEEhHHhHh
Confidence 46666643 688899999999999999999999999997 467999999999986
No 182
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=89.08 E-value=0.82 Score=34.98 Aligned_cols=47 Identities=17% Similarity=0.397 Sum_probs=40.7
Q ss_pred CeEEEcccchHHHHHHHHHHcCCCeeccccCC--CCceeeeechHHHHH
Q 024154 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDF--KGRFVGVLSALDFIL 212 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~--~~~f~G~lt~tD~i~ 212 (271)
+++++.-+.++.+|...|.++++..+|+-|.. .++++|+++..|.+.
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~ 51 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDF 51 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhh
Confidence 46778889999999999999999999998863 588999999999764
No 183
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=89.07 E-value=0.55 Score=43.92 Aligned_cols=50 Identities=16% Similarity=0.288 Sum_probs=42.1
Q ss_pred CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHH
Q 024154 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRE 216 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~ 216 (271)
+.+++.-+.++.+|+..|.+++...||+=|.. +.++|++|..|++..|.-
T Consensus 141 ~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~-G~viGiVTleDIle~ivG 190 (292)
T PRK15094 141 QAVVVPESKRVDRMLKEFRSQRYHMAIVIDEF-GGVSGLVTIEDILELIVG 190 (292)
T ss_pred CCcCcCCCCcHHHHHHHHHhcCCEEEEEEeCC-CCEEEEeEHHHHHHHHhC
Confidence 34456667789999999999999999999854 569999999999997753
No 184
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=89.05 E-value=0.64 Score=34.83 Aligned_cols=45 Identities=24% Similarity=0.474 Sum_probs=40.0
Q ss_pred CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHH
Q 024154 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFI 211 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i 211 (271)
+.++++.+.+++.|...|.+++....|+-|.. ++++|++|..|.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~ 47 (110)
T cd04601 3 DPITVSPDATVAEALELMAEYGISGLPVVDDD-GKLVGIVTNRDLR 47 (110)
T ss_pred CCeEeCCCCcHHHHHHHHHHcCCceEEEEcCC-CEEEEEEEhhHee
Confidence 56788999999999999999999899988866 8999999999875
No 185
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=88.72 E-value=1.2 Score=33.61 Aligned_cols=47 Identities=17% Similarity=0.332 Sum_probs=37.8
Q ss_pred eEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154 167 VTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR 215 (271)
Q Consensus 167 ~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~ 215 (271)
+.++..+.++.+|...|.+++....++=+ .++++|++|..|+++.+.
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~G~v~~~dl~~~~~ 49 (112)
T cd04625 3 IYTVAPETLLSEAVATMAEQDLGSLVVME--RGELVGLLTFREVLQAMA 49 (112)
T ss_pred cEEECCCCcHHHHHHHHHHcCCCeEEEee--CCEEEEEEEHHHHHHHHH
Confidence 46678889999999999888876655544 389999999999987554
No 186
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=88.45 E-value=0.91 Score=42.37 Aligned_cols=58 Identities=12% Similarity=0.257 Sum_probs=46.3
Q ss_pred ccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154 157 VYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR 215 (271)
Q Consensus 157 cYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~ 215 (271)
.=|+|-....++.++.+.++.+|+..|.++++..+|+=| +.++++|++|..|+.+++.
T Consensus 204 V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd-~~g~lvGivt~~Dl~~~~~ 261 (326)
T PRK10892 204 VSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICD-DNMKIEGIFTDGDLRRVFD 261 (326)
T ss_pred HHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEc-CCCcEEEEEecHHHHHHHh
Confidence 334444333788999999999999999999988878766 4578999999999887554
No 187
>PRK11573 hypothetical protein; Provisional
Probab=87.77 E-value=1.3 Score=43.42 Aligned_cols=63 Identities=16% Similarity=0.211 Sum_probs=58.4
Q ss_pred hhhccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHH
Q 024154 152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILIL 214 (271)
Q Consensus 152 l~~~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il 214 (271)
|...+.-|+|=.-.+++.+|.+.++.+++..+.+.|..--|+++....+++|++.+.|++..+
T Consensus 184 l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~ 246 (413)
T PRK11573 184 LEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLM 246 (413)
T ss_pred cCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHh
Confidence 577888999877789999999999999999999999999999999999999999999999754
No 188
>COG0517 FOG: CBS domain [General function prediction only]
Probab=87.48 E-value=1.6 Score=32.97 Aligned_cols=53 Identities=26% Similarity=0.475 Sum_probs=46.2
Q ss_pred CCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHHhcc
Q 024154 165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGT 219 (271)
Q Consensus 165 ~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~~~~ 219 (271)
..++...-+.++..|+..|.++++...|+=+.. +++|++|..|++..+.....
T Consensus 7 ~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~~--~l~Giit~~di~~~~~~~~~ 59 (117)
T COG0517 7 KDVITVKPDTSVRDALLLMSENGVSAVPVVDDG--KLVGIITERDILRALAAGGK 59 (117)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeCC--EEEEEEEHHHHHHHHhccCC
Confidence 567888889999999999999999888887765 89999999999998876654
No 189
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=87.45 E-value=2.2 Score=46.03 Aligned_cols=67 Identities=21% Similarity=0.285 Sum_probs=45.6
Q ss_pred EEEEE-ecCCCceEEEEeccCCCC--CCCCCCCCCCCCCeEEEEEe-cCCceEEEEEEEc------Ce----eecCCCCC
Q 024154 22 PVRFI-WPNGGRRVSLSGSFTRWS--EPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVD------GE----WRHDENQP 87 (271)
Q Consensus 22 pVtF~-w~~~ak~V~V~GsF~nW~--~~ipM~k~~~~~g~f~~~~~-LppG~yeYKFiVD------G~----W~~Dp~~P 87 (271)
.++|+ |...|++|.|+...++|. ..++|.+.+ ..|+|++.+. ...|. .|+|.|+ |+ .+.||...
T Consensus 136 gv~FrVWAPtA~~V~L~Ly~~~~~~~~~~~M~~~~-~~GVWsv~v~g~~~G~-~Y~Y~V~v~~p~~G~v~~~~v~DPYA~ 213 (898)
T TIGR02103 136 GVTFRLWAPTAQQVKLHIYSASKKVETTLPMTRDS-TSGVWSAEGGSSWKGA-YYRYEVTVYHPSTGKVETYLVTDPYSV 213 (898)
T ss_pred cEEEEEECCCCCEEEEEEEcCCCCccceEeCccCC-CCCEEEEEECcCCCCC-EeEEEEEEecCCCCeECCeEEeCcCcc
Confidence 45664 667899999997666553 236898763 2699999986 44554 3666664 53 37888876
Q ss_pred eee
Q 024154 88 HVS 90 (271)
Q Consensus 88 ~v~ 90 (271)
.+.
T Consensus 214 als 216 (898)
T TIGR02103 214 SLS 216 (898)
T ss_pred eEc
Confidence 654
No 190
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=86.97 E-value=1.1 Score=45.14 Aligned_cols=60 Identities=15% Similarity=0.225 Sum_probs=50.6
Q ss_pred ccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHHh
Q 024154 157 VYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILREL 217 (271)
Q Consensus 157 cYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~~ 217 (271)
+-+++-...++++++.+.++.+|+..|.++++...|+=|.+ ++++||||..|+++.+.|-
T Consensus 165 V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~-g~LvGvITr~DIlk~~~~p 224 (505)
T PLN02274 165 LSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNED-GELVDLVTRTDVKRVKGYP 224 (505)
T ss_pred HHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHhhCc
Confidence 44445334458899999999999999999999999998865 5799999999999999873
No 191
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=86.48 E-value=1.3 Score=44.32 Aligned_cols=51 Identities=18% Similarity=0.234 Sum_probs=45.2
Q ss_pred CCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHH
Q 024154 165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRE 216 (271)
Q Consensus 165 ~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~ 216 (271)
..+++++-+.++..|+..|.++++...|+-|.+ ++++|+||..|+++...+
T Consensus 154 ~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~-g~LvGIIT~~DLl~~~~~ 204 (475)
T TIGR01303 154 TDLVTAPADTEPRKAFDLLEHAPRDVAPLVDAD-GTLAGILTRTGALRATIY 204 (475)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHHhC
Confidence 468888999999999999999999999998854 579999999999987664
No 192
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=86.44 E-value=0.85 Score=34.52 Aligned_cols=42 Identities=26% Similarity=0.434 Sum_probs=34.1
Q ss_pred EcccchHHHHHHHHHHcC-----CCeeccccCCCCceeeeechHHHHH
Q 024154 170 LDVNLAVKQAFHVLYEQG-----LPMVPLWDDFKGRFVGVLSALDFIL 212 (271)
Q Consensus 170 ~D~~l~v~~Af~al~~~g-----~~~aplwds~~~~f~G~lt~tD~i~ 212 (271)
+..+.+++.|+..|.+++ +..+|+=|.. ++|+||+|..|+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~-~~~~G~v~~~~l~~ 48 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEE-GRLLGVVSLRDLLL 48 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECCC-CCEEEEEEHHHHhc
Confidence 356778999999998887 4678888765 78999999999875
No 193
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=86.25 E-value=1 Score=45.46 Aligned_cols=58 Identities=17% Similarity=0.280 Sum_probs=49.1
Q ss_pred cccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHH
Q 024154 156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILIL 214 (271)
Q Consensus 156 tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il 214 (271)
+.-|+|-.+-++++++.+.++.+|+..|.++++...|+=|.+ ++++|+||..|++...
T Consensus 162 ~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~-g~LvGIIT~~Dilk~~ 219 (502)
T PRK07107 162 KVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKN-GNLVYLVFRKDYDSHK 219 (502)
T ss_pred CHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CeEEEEEEhHHHHhcc
Confidence 344555444579999999999999999999999999999854 5699999999999865
No 194
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=85.83 E-value=1.5 Score=33.35 Aligned_cols=55 Identities=11% Similarity=0.212 Sum_probs=40.3
Q ss_pred ccccccCCCCCCeEEEcccchHHHHHHHHHHcCCC---eeccccCCCCceeeeechHHHHH
Q 024154 155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLP---MVPLWDDFKGRFVGVLSALDFIL 212 (271)
Q Consensus 155 ~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~---~aplwds~~~~f~G~lt~tD~i~ 212 (271)
.++=+++. ...+.++-+.++..|+..|.+++.. .+++=|. .++++|++|..|+++
T Consensus 61 ~~v~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~-~~~~~Gvvs~~di~~ 118 (119)
T cd04598 61 KPVSEVMD--PDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTE-EGRYLGIGTVKDLLR 118 (119)
T ss_pred CcHHHhcC--CCcEEecCCCCHHHHHHHHHcCCcccccccEEEee-CCeEEEEEEHHHHhc
Confidence 34445553 3577788888899999999998853 3344444 489999999999875
No 195
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=85.79 E-value=1.6 Score=43.99 Aligned_cols=60 Identities=20% Similarity=0.386 Sum_probs=50.7
Q ss_pred ccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHHh
Q 024154 155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILREL 217 (271)
Q Consensus 155 ~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~~ 217 (271)
.++-|++ ..+++.+..+.++++|+..|.++++...|+-|.+ ++++|++|..|+...+..-
T Consensus 68 ~~V~dim--~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~l~Givt~~di~~~~~~~ 127 (546)
T PRK14869 68 PQVRDLE--IDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEE-GKLLGLVSLSDLARAYMDI 127 (546)
T ss_pred CcHHHhc--CCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHhh
Confidence 4566655 2478999999999999999999999999999865 7899999999999866543
No 196
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=84.00 E-value=1.7 Score=43.52 Aligned_cols=51 Identities=20% Similarity=0.341 Sum_probs=45.8
Q ss_pred CCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHH
Q 024154 165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRE 216 (271)
Q Consensus 165 ~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~ 216 (271)
..++++..+.++.+|+..|.++++..+|+-|.. +.++|++|..|++..+.+
T Consensus 156 ~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~-g~lvGiIT~~DLl~~~~~ 206 (486)
T PRK05567 156 ERLVTVPEGTTLEEALELLHEHRIEKLPVVDDN-GRLKGLITVKDIEKAEEF 206 (486)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEEhHHhhhhhhC
Confidence 467888999999999999999999999998865 689999999999998764
No 197
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=83.84 E-value=2.1 Score=43.00 Aligned_cols=51 Identities=24% Similarity=0.332 Sum_probs=45.3
Q ss_pred CCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHH
Q 024154 165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRE 216 (271)
Q Consensus 165 ~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~ 216 (271)
..++.+..+.++.+|+..|.++++...|+=|.+ ++++|+||.+|+++.+.+
T Consensus 156 ~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~-g~lvGIIT~~DIl~~~~~ 206 (479)
T PRK07807 156 TDLVTLPAGTDPREAFDLLEAARVKLAPVVDAD-GRLVGVLTRTGALRATIY 206 (479)
T ss_pred CCceEECCCCcHHHHHHHHHhcCCCEEEEEcCC-CeEEEEEEHHHHHHHhhC
Confidence 468888999999999999999999999998875 489999999999987764
No 198
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=83.82 E-value=2.2 Score=43.26 Aligned_cols=51 Identities=12% Similarity=0.156 Sum_probs=45.2
Q ss_pred CeEEEcccchHHHHHHHHHHcCCCeeccccCCC-CceeeeechHHHHHHHHH
Q 024154 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFK-GRFVGVLSALDFILILRE 216 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~-~~f~G~lt~tD~i~il~~ 216 (271)
.++.++.+.++++|+..+.++++...|+=|.+. ++++|++|..|+++.++.
T Consensus 521 ~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~~ 572 (574)
T PRK01862 521 PFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYRR 572 (574)
T ss_pred CCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHHh
Confidence 467889999999999999999999999988764 689999999999988764
No 199
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=83.78 E-value=1.4 Score=43.72 Aligned_cols=51 Identities=22% Similarity=0.389 Sum_probs=45.8
Q ss_pred CCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHH
Q 024154 165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRE 216 (271)
Q Consensus 165 ~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~ 216 (271)
.+++.+..+.++.+|+..|.++++..+|+-|.. +.++|++|..|+++.+.+
T Consensus 152 ~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~-G~lvGiVT~~DIl~~~~~ 202 (450)
T TIGR01302 152 EEVITVPEGIDLEEALKVLHEHRIEKLPVVDKN-GELVGLITMKDIVKRRKF 202 (450)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCC-CcEEEEEEhHHhhhcccC
Confidence 368889999999999999999999999999864 779999999999998754
No 200
>cd02857 CD_pullulan_degrading_enzymes_N_term CD and pullulan-degrading enzymes N-terminus domain. Members of this subgroup include: Cyclomaltodextrinase (CDase), maltogenic amylase, and neopullulanase all of which are capable of hydrolyzing all or two of the following three types of substrates: cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. The N-terminus of the CD and pullulan-degrading enzymes may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of
Probab=83.71 E-value=4.3 Score=31.58 Aligned_cols=56 Identities=18% Similarity=0.191 Sum_probs=36.2
Q ss_pred eEEEEEecC-CCceEEEEeccCC--CC-CCCCCCCCCCCC--CeEEEEEecCCceEEEEEEE
Q 024154 21 VPVRFIWPN-GGRRVSLSGSFTR--WS-EPMPMSPSEGCP--AVFQIICRLPPGHHQYKFYV 76 (271)
Q Consensus 21 vpVtF~w~~-~ak~V~V~GsF~n--W~-~~ipM~k~~~~~--g~f~~~~~LppG~yeYKFiV 76 (271)
+.++++-.. +.++|.|.-.-+. +. ..++|.+..... ..|++++.++.|.+.|.|.|
T Consensus 18 v~irlr~~~~~v~~v~l~~~~~~~~~~~~~~~M~~~~~~~~~~~~~~~i~~~~~~~~Y~F~l 79 (116)
T cd02857 18 LHIRLRTKKGDVAKVYLRYGDPYDKGEEEEVPMRKDGSDELFDYWEATLPPPTGRLRYYFEL 79 (116)
T ss_pred EEEEEEecCCCccEEEEEEECCCCCCCceEEEEEEeeeCCceeEEEEEEecCCcEEEEEEEE
Confidence 444444433 4678888654442 22 246898764211 35899998877999999999
No 201
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=82.01 E-value=2.9 Score=38.82 Aligned_cols=46 Identities=22% Similarity=0.366 Sum_probs=41.4
Q ss_pred CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~ 212 (271)
..++++.+-++.+|+..|.++++...|+=|.+ ++++|++|..|+++
T Consensus 272 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-~~lvGvIt~~di~~ 317 (321)
T PRK11543 272 GGTTLQAQSRAIDAKEILMKRKITAAPVVDEN-GKLTGAINLQDFYQ 317 (321)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHh
Confidence 57788999999999999999999999998865 48999999999985
No 202
>PLN03244 alpha-amylase; Provisional
Probab=81.61 E-value=1.7 Score=46.36 Aligned_cols=55 Identities=25% Similarity=0.472 Sum_probs=40.6
Q ss_pred eEEEEEecCCCceEEEEeccCCCCCCC-C-----CCCCCCCCCeEEEEEe--cCCce-------EEEEEEEc
Q 024154 21 VPVRFIWPNGGRRVSLSGSFTRWSEPM-P-----MSPSEGCPAVFQIICR--LPPGH-------HQYKFYVD 77 (271)
Q Consensus 21 vpVtF~w~~~ak~V~V~GsF~nW~~~i-p-----M~k~~~~~g~f~~~~~--LppG~-------yeYKFiVD 77 (271)
.-.--.|..||.--+|+|+||||.++. . |.+++ -|+|.+.++ |..|. -||.|.-|
T Consensus 132 ~~~~~ewapga~~~~~~gdfn~w~~~~~~~r~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (872)
T PLN03244 132 RVDFMDWAPGARYCAIIGDFNGWSPTENAAREGHFGHDD--YGYWFIILEDKLREGEEPDELYFQQYNYVDD 201 (872)
T ss_pred CceeEeecCCcceeeeeccccCCCccccccccccccccc--cceEEEEechhhhcCCCchhhhHhhhccccc
Confidence 334457999999999999999998863 2 44555 689999986 76652 36777654
No 203
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=81.57 E-value=3.1 Score=41.12 Aligned_cols=51 Identities=20% Similarity=0.291 Sum_probs=44.6
Q ss_pred CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHHh
Q 024154 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILREL 217 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~~ 217 (271)
..+.+..+.++.+|+..+.++++.++|+=|.. +.++|++|..|+++.+..-
T Consensus 204 ~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~-g~lvGiIt~~Dil~~l~~~ 254 (449)
T TIGR00400 204 SVFSIVGVNDQEEVARLIQKYDFLAVPVVDNE-GRLVGIVTVDDIIDVIQSE 254 (449)
T ss_pred CCeeECCCCCHHHHHHHHHHcCCCEEeEEcCC-CeEEEEEEHHHHHHHHHhh
Confidence 35677888899999999999999999998865 5799999999999988763
No 204
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=81.16 E-value=3.2 Score=38.50 Aligned_cols=48 Identities=23% Similarity=0.312 Sum_probs=42.1
Q ss_pred eEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154 167 VTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR 215 (271)
Q Consensus 167 ~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~ 215 (271)
++.+..+.++.+|...|.+++...+|+=|. .++++|++|..|+...+.
T Consensus 209 ~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~-~g~~iG~vt~~dl~~~~~ 256 (321)
T PRK11543 209 IPQVALTASVMDAMLELSRTGLGLVAVCDA-QQQVQGVFTDGDLRRWLV 256 (321)
T ss_pred CcEeCCCCCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEecHHHHHHHHh
Confidence 677888999999999999999999999884 478999999999987654
No 205
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=80.97 E-value=2.3 Score=41.54 Aligned_cols=67 Identities=24% Similarity=0.408 Sum_probs=56.3
Q ss_pred HHhhhhcccccc-CCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHHh
Q 024154 149 SSFLSTHTVYEL-LPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILREL 217 (271)
Q Consensus 149 ~~fl~~~tcYd~-lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~~ 217 (271)
..+|+ ++|=|+ ++.-..++..+.+-+|..|+..|.++++.+.|+=|..... +|+++.+|.+++++.-
T Consensus 221 ~~~l~-~s~~dl~ig~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~-v~~~s~~Dv~~l~~~~ 288 (381)
T KOG1764|consen 221 PSLLS-KSLSDLGIGTWSNIASISEDTPVIEALKIMSERRISALPVVDENGKK-VGNYSRFDVIHLAREG 288 (381)
T ss_pred HHHhh-CCHHHhCcchhhhheeecCCCcHHHHHHHHHhcCcCcceEEcCCCce-ecceehhhhhhhhhcC
Confidence 34443 444444 6766679999999999999999999999999999999888 9999999999988754
No 206
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=80.50 E-value=2.9 Score=42.39 Aligned_cols=63 Identities=25% Similarity=0.279 Sum_probs=49.9
Q ss_pred HhhhhccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154 150 SFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR 215 (271)
Q Consensus 150 ~fl~~~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~ 215 (271)
+.|..-+.-|++-. +.++++.+.++++|...+.+++....|+-|. .++++|++|..|+++.+.
T Consensus 442 ~~L~~~~V~dim~~--~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~-~g~lvGiVt~~dL~~~l~ 504 (574)
T PRK01862 442 ERLRTTQMRELIQP--AQTVVPPTASVADMTRVFLEYPVKYLYVVDD-DGRFRGAVALKDITSDLL 504 (574)
T ss_pred hHHhhCcHHHHhcC--CCceeCCCCCHHHHHHHHHhCCCceEEEEcC-CCeEEEEEEHHHHHHHhh
Confidence 44555566665532 4567888899999999999999999999885 478999999999998654
No 207
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=80.17 E-value=3.6 Score=41.37 Aligned_cols=63 Identities=16% Similarity=0.270 Sum_probs=52.2
Q ss_pred hhhhccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154 151 FLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR 215 (271)
Q Consensus 151 fl~~~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~ 215 (271)
+-++..+-++|- +..+++++.+.++.+|...|.+++++..|+=|.+ ++++|++|..|+++...
T Consensus 242 l~~~~~V~~iM~-~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~-g~lvGiit~~dl~~~~~ 304 (546)
T PRK14869 242 INQSIPVSYIMT-TEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDED-GKVVGVISRYHLLSPVR 304 (546)
T ss_pred hhcCCCHHHhcc-CCCcEEECCCCcHHHHHHHHHhcCCCceEEEcCC-CCEEEEEEHHHhhcccc
Confidence 334555666664 2578999999999999999999999999999965 78999999999998554
No 208
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=79.17 E-value=3 Score=37.46 Aligned_cols=48 Identities=21% Similarity=0.240 Sum_probs=42.4
Q ss_pred eEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154 167 VTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR 215 (271)
Q Consensus 167 ~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~ 215 (271)
.+++..+.++.+|+..|.+.++..+|+=|.+ ++++|++|..|+++.+.
T Consensus 166 ~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~-g~~~Givt~~dl~~~~~ 213 (268)
T TIGR00393 166 LPLIAPTTSFKDALLEMSEKRLGSAIVCDEN-NQLVGVFTDGDLRRALL 213 (268)
T ss_pred CCcCCCCCcHHHHHHHHhhcCCcEEEEEeCC-CCEEEEEEcHHHHHHHh
Confidence 7788899999999999999999999988865 78999999999998653
No 209
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=78.25 E-value=2.4 Score=42.66 Aligned_cols=60 Identities=22% Similarity=0.238 Sum_probs=48.7
Q ss_pred ccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHHh
Q 024154 157 VYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILREL 217 (271)
Q Consensus 157 cYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~~ 217 (271)
+.|+|-.-.+++++..+.++.+|+..|.++++...|+=|.+ ++++|++|.+|+++...+.
T Consensus 161 V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~-g~liGIIT~~DIl~~~~~p 220 (495)
T PTZ00314 161 VSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDN-GELVALVSRSDLKKNRGYP 220 (495)
T ss_pred HHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCC-CcEEEEEEehHhhhcccCc
Confidence 33444322368888889999999999999999999998765 5799999999999987654
No 210
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=78.01 E-value=1.7 Score=45.63 Aligned_cols=40 Identities=28% Similarity=0.525 Sum_probs=30.3
Q ss_pred EEE-EecCCCceEEEEeccCCCCCCC-CCC-CCCCCCCeEEEEEe
Q 024154 23 VRF-IWPNGGRRVSLSGSFTRWSEPM-PMS-PSEGCPAVFQIICR 64 (271)
Q Consensus 23 VtF-~w~~~ak~V~V~GsF~nW~~~i-pM~-k~~~~~g~f~~~~~ 64 (271)
|.| .|...++.|.++|+||+|+... .|. +++ .|.|++.+.
T Consensus 115 v~~~ewaP~a~~~s~~gd~n~W~~~~~~~~~k~~--~g~w~i~l~ 157 (757)
T KOG0470|consen 115 VDFTEWAPLAEAVSLIGDFNNWNPSSNELKPKDD--LGVWEIDLP 157 (757)
T ss_pred eeeeeecccccccccccccCCCCCcccccCcccc--cceeEEecC
Confidence 555 4677899999999999998742 444 443 689998876
No 211
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=77.61 E-value=6.5 Score=43.95 Aligned_cols=56 Identities=18% Similarity=0.294 Sum_probs=41.3
Q ss_pred eEEEEEe-cCCCceEEEEeccCCCCCC----CCCCCCCCCCCeEEEEEe-cCCceEEEEEEEcCee
Q 024154 21 VPVRFIW-PNGGRRVSLSGSFTRWSEP----MPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGEW 80 (271)
Q Consensus 21 vpVtF~w-~~~ak~V~V~GsF~nW~~~----ipM~k~~~~~g~f~~~~~-LppG~yeYKFiVDG~W 80 (271)
.-|+|+. ...|++|.|+ -|+.|... ++|... ..++|++.+. +.+|. .|+|.|+|.+
T Consensus 23 ~gv~F~v~ap~A~~V~L~-lf~~~~~~~~~~~~l~~~--~g~vW~~~i~~~~~g~-~Ygyrv~g~~ 84 (1221)
T PRK14510 23 GGVNLALFSGAAERVEFC-LFDLWGVREEARIKLPGR--TGDVWHGFIVGVGPGA-RYGNRQEGPG 84 (1221)
T ss_pred CeEEEEEECCCCCEEEEE-EEECCCCCeeEEEECCCC--cCCEEEEEEccCCCCc-EEEEEeccCC
Confidence 3578865 4579999998 88888542 466543 3689999876 77886 6999999854
No 212
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=76.29 E-value=6.5 Score=39.54 Aligned_cols=58 Identities=22% Similarity=0.222 Sum_probs=48.0
Q ss_pred hhhhccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHH
Q 024154 151 FLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFI 211 (271)
Q Consensus 151 fl~~~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i 211 (271)
.++.-+..+++ ....+.+..+.++.+|+..|.++++...|+-| +.++++|++|..|+.
T Consensus 85 ~l~~VKv~~iM--i~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD-~~gklvGIVT~rDL~ 142 (479)
T PRK07807 85 VVAWVKSRDLV--FDTPVTLSPDDTVGDALALLPKRAHGAVVVVD-EEGRPVGVVTEADCA 142 (479)
T ss_pred HHhhccccccc--ccCCeEECCCCCHHHHHHHHHhcCCceEEEEC-CCCeEEEEEeHHHHh
Confidence 34555566664 45678899999999999999999999999999 457899999999974
No 213
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=75.58 E-value=5.2 Score=39.15 Aligned_cols=49 Identities=14% Similarity=0.121 Sum_probs=41.8
Q ss_pred CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR 215 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~ 215 (271)
+.+.+--+.++.+++..|.+++...|++=|. -+..+|++|.+|++.-|.
T Consensus 263 ~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE-~G~~~GiVT~eDileeiv 311 (408)
T TIGR03520 263 EPYFVPENKKLDDLLRDFQEKKNHLAIVVDE-YGGTSGLVTLEDIIEEIV 311 (408)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCceEEEEEcC-CCCEEEEEEHHHHHHHHh
Confidence 4455666778999999999999999999884 478999999999999663
No 214
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=75.09 E-value=5.8 Score=29.38 Aligned_cols=52 Identities=21% Similarity=0.447 Sum_probs=35.5
Q ss_pred cccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154 156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL 212 (271)
Q Consensus 156 tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~ 212 (271)
++.+++.. ..+.++.+.++..|...|.+ ... +|+=|- .+.++|++|..|+++
T Consensus 58 ~~~~~~~~--~~~~v~~~~~l~~~~~~~~~-~~~-~~vv~~-~~~~~Gvvt~~di~~ 109 (110)
T cd04609 58 PVREVMGE--PLPTVDPDAPIEELSELLDR-GNV-AVVVDE-GGKFVGIITRADLLK 109 (110)
T ss_pred CHHHHhcC--CCceeCCCCcHHHHHHHHHh-CCc-eeEEec-CCeEEEEEeHHHhhc
Confidence 34455532 46778888888888888877 333 444442 368999999999864
No 215
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=74.23 E-value=5.1 Score=40.11 Aligned_cols=46 Identities=20% Similarity=0.442 Sum_probs=42.7
Q ss_pred CCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHH
Q 024154 165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFI 211 (271)
Q Consensus 165 ~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i 211 (271)
.++++++.+.++.+|+..|.++++...|+-|. ..+++|++|..|+.
T Consensus 95 ~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~-~g~lvGiVt~~DL~ 140 (486)
T PRK05567 95 TDPVTVTPDTTLAEALALMARYGISGVPVVDE-NGKLVGIITNRDVR 140 (486)
T ss_pred CCCeEeCCCCCHHHHHHHHHHhCCCEEEEEcc-CCEEEEEEEHHHhh
Confidence 68899999999999999999999999999994 68999999999985
No 216
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants []. They are believed to act as a sort of chemical grease, allowing polymers to slide past one another by disrupting non-covalent hydrogen bonds that hold many wall polymers to one another. This process is not degradative and hence does not weaken the wall, which could otherwise rupture under internal pressure during growth. Sequence comparisons indicate at least four distinct expansin cDNAs in rice and at least six in Arabidopsis. The proteins are highly conserved in size and sequence (75-95% amino acid sequence similarity between any pairwise comparison), and phylogenetic trees indicate that this multigene family formed before the evolutionary divergence of monocotyledons and dicotyledons []. Sequence and motif analyses show no similarities to known functional domains that might account for expansin action on wall extension. It is thought that several highly-conserved tryptophans may function in expansin binding to cellulose, or other glycans. The high conservation of the family indicates that the mechanism by which expansins promote wall extensin tolerates little variation in protein structure. Grass pollens, such as pollen from timothy grass, represent a major cause of type I allergy []. Interestingly, expansins share a high degree of sequence similarity with the Lol p I family of allergens. This entry represents the C-terminal domain.; PDB: 2VXQ_A 1WHP_A 1BMW_A 1WHO_A 2HCZ_X 2JNZ_A 3FT9_A 3FT1_C 1N10_B.
Probab=71.74 E-value=16 Score=27.72 Aligned_cols=61 Identities=26% Similarity=0.333 Sum_probs=40.7
Q ss_pred CCcceEEEEEecCCC---ceEEEEecc-CCCCCCCCCCCCCCCCCeEEEEEecCCceEEEEEEE-c-Ceeec
Q 024154 17 GSILVPVRFIWPNGG---RRVSLSGSF-TRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYV-D-GEWRH 82 (271)
Q Consensus 17 ~~~~vpVtF~w~~~a---k~V~V~GsF-~nW~~~ipM~k~~~~~g~f~~~~~LppG~yeYKFiV-D-G~W~~ 82 (271)
.+...-+.+.+.+++ +.|+|.++= .+| .+|++.. ...|++.-.++.|-+.+|+.. | |+++.
T Consensus 10 ~~~~l~v~v~n~gG~gdi~~Vevk~~~s~~W---~~m~r~w--Ga~W~~~~~~~~~pls~Rvts~~~G~~vv 76 (82)
T PF01357_consen 10 NPYYLAVLVKNVGGDGDIKAVEVKQSGSGNW---IPMKRSW--GAVWQIDSNPPGGPLSFRVTSGDSGQTVV 76 (82)
T ss_dssp BTTEEEEEEEECCTTS-EEEEEEEETTSSS----EE-EEEC--TTEEEEE-SS--SSEEEEEEETTTSEEEE
T ss_pred CCcEEEEEEEEcCCCccEEEEEEEeCCCCCc---eEeecCc--CceEEECCCCcCCCEEEEEEEcCCCeEEE
Confidence 345566677776543 689999554 459 5899875 469999887777899999988 7 88765
No 217
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=71.73 E-value=8.8 Score=37.72 Aligned_cols=66 Identities=23% Similarity=0.423 Sum_probs=59.3
Q ss_pred hhhccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHHh
Q 024154 152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILREL 217 (271)
Q Consensus 152 l~~~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~~ 217 (271)
|.+.+.=++|=.-..++.+|.+-++.++...+.++|..--|+.+.....++||+.+-|++..+..-
T Consensus 203 l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~ 268 (429)
T COG1253 203 LDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDG 268 (429)
T ss_pred cCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcC
Confidence 467777788777899999999999999999999999999999999999999999999999866544
No 218
>PF02903 Alpha-amylase_N: Alpha amylase, N-terminal ig-like domain; InterPro: IPR004185 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1J0J_A 1J0H_A 1J0I_A 1J0K_A 1EA9_C 1SMA_A 1GVI_B 1WZK_B 1VFM_B 3A6O_A ....
Probab=70.89 E-value=6 Score=31.74 Aligned_cols=58 Identities=16% Similarity=0.146 Sum_probs=38.3
Q ss_pred cceEEEEEecC-CCceEEEE-eccCCC----CC-CCCCCCCC--CCCCeEEEEEecCCceEEEEEEE
Q 024154 19 ILVPVRFIWPN-GGRRVSLS-GSFTRW----SE-PMPMSPSE--GCPAVFQIICRLPPGHHQYKFYV 76 (271)
Q Consensus 19 ~~vpVtF~w~~-~ak~V~V~-GsF~nW----~~-~ipM~k~~--~~~g~f~~~~~LppG~yeYKFiV 76 (271)
..+.++|+-.. +.++|.|. |+-.+| .. ..+|++.. +.-..|++++.++..+..|.|.|
T Consensus 21 ~~l~IRLRt~k~Dv~~V~l~~~d~~~~~~~~~~~~~~M~k~~~~~~fDyye~~l~~~~~r~~Y~F~l 87 (120)
T PF02903_consen 21 DTLHIRLRTAKNDVEKVFLVYGDPYEEEGKWTYKSVEMEKIASDELFDYYEATLKLPEKRLRYYFEL 87 (120)
T ss_dssp TEEEEEEEEETTT-SEEEEEEEETTSETTCECEEEEEEEEEEEESSEEEEEEEEE-TTSEEEEEEEE
T ss_pred CEEEEEEEecCCCCCEEEEEECCCccccccceEEEEEeEEEEeCCCeEEEEEEEECCCCeEEEEEEE
Confidence 34556666643 57899986 666666 11 25787643 12347899999999999999998
No 219
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=70.03 E-value=8.7 Score=36.08 Aligned_cols=50 Identities=14% Similarity=0.289 Sum_probs=45.7
Q ss_pred CCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154 165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR 215 (271)
Q Consensus 165 ~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~ 215 (271)
-+++.++-+-.+..|+..|..+|+.--.+-||+ +..+|++|-||++..|.
T Consensus 242 k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~-gkpvGiITrTDIL~~ia 291 (294)
T COG2524 242 KNVITINEDEDIYDAIRLMNKNNVGRLLVTDSN-GKPVGIITRTDILTRIA 291 (294)
T ss_pred cCCceEcCchhHHHHHHHHHhcCcceEEEEccC-CcEEEEEehHHHHHHhh
Confidence 568999999999999999999999988888887 88999999999998775
No 220
>PLN02877 alpha-amylase/limit dextrinase
Probab=68.90 E-value=18 Score=39.54 Aligned_cols=64 Identities=19% Similarity=0.304 Sum_probs=40.5
Q ss_pred EEEE-EecCCCceEEEEeccCCCC---C--CCCCCCCCCCCCeEEEEEec-CCceEEEEEEEc------Ce----eecCC
Q 024154 22 PVRF-IWPNGGRRVSLSGSFTRWS---E--PMPMSPSEGCPAVFQIICRL-PPGHHQYKFYVD------GE----WRHDE 84 (271)
Q Consensus 22 pVtF-~w~~~ak~V~V~GsF~nW~---~--~ipM~k~~~~~g~f~~~~~L-ppG~yeYKFiVD------G~----W~~Dp 84 (271)
.++| .|...|++|.|+- |++|. + .++|. . ..|+|++.+.- ..| ..|+|.|+ |. ...||
T Consensus 223 g~~F~VWAPtA~~V~L~l-yd~~~~~~~~~~~~m~-~--~~GVWsv~v~~~~~G-~~Y~Y~V~v~~p~~g~~~~~~v~DP 297 (970)
T PLN02877 223 AVSLYLWAPTAQAVSLCL-YDDPRGKEPLEIVQLK-E--SNGVWSVEGPKSWEG-CYYVYEVSVYHPSTGKVETCYANDP 297 (970)
T ss_pred CEEEEEECCCCCEEEEEE-ecCCCCccceEEeccc-C--CCCEEEEEeccCCCC-CeeEEEEeecccCCCcccccccCCc
Confidence 4666 4677899999994 55543 2 24676 2 37999999873 345 44666665 32 25677
Q ss_pred CCCeee
Q 024154 85 NQPHVS 90 (271)
Q Consensus 85 ~~P~v~ 90 (271)
....+.
T Consensus 298 YA~als 303 (970)
T PLN02877 298 YARGLS 303 (970)
T ss_pred cceEEe
Confidence 765544
No 221
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=68.51 E-value=13 Score=37.60 Aligned_cols=50 Identities=8% Similarity=0.064 Sum_probs=44.3
Q ss_pred CCCCeEEEcccchHHHHHHHHHHcCCCeeccccCC--CCceeeeechHHHHH
Q 024154 163 DSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDF--KGRFVGVLSALDFIL 212 (271)
Q Consensus 163 ~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~--~~~f~G~lt~tD~i~ 212 (271)
-....+.+.-+.++.+|...|.++++...|+=|.. .++++|++|..|+..
T Consensus 106 mi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~ 157 (505)
T PLN02274 106 FVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDF 157 (505)
T ss_pred ccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhh
Confidence 34678899999999999999999999999999875 479999999999854
No 222
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=68.18 E-value=13 Score=36.59 Aligned_cols=50 Identities=16% Similarity=0.216 Sum_probs=46.0
Q ss_pred CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHH
Q 024154 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRE 216 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~ 216 (271)
+++++--.+++.+++..|.+.....|.+-|.- +.+.||+|..|.|..|.=
T Consensus 280 ~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEy-G~~~GlVTleDIiEeIvG 329 (429)
T COG1253 280 PPLFVPETLSLSDLLEEFREERTHMAIVVDEY-GGVEGLVTLEDIIEEIVG 329 (429)
T ss_pred CCeEecCCCcHHHHHHHHHHhCCeEEEEEEcC-CCeEEEeEHHHHHHHHhC
Confidence 78888888999999999999999999999988 999999999999997754
No 223
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=67.33 E-value=3.7 Score=32.34 Aligned_cols=48 Identities=13% Similarity=0.135 Sum_probs=32.8
Q ss_pred CCeEEEcccchHHHHHHHHH---------HcCCCeeccccCCCCceeeeechHHHHHH
Q 024154 165 GKVTALDVNLAVKQAFHVLY---------EQGLPMVPLWDDFKGRFVGVLSALDFILI 213 (271)
Q Consensus 165 ~k~vv~D~~l~v~~Af~al~---------~~g~~~aplwds~~~~f~G~lt~tD~i~i 213 (271)
..++.++.+-++.++...+. ++...+.|+=| +.+.++||+|..|++..
T Consensus 67 ~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~Givt~~Dl~~~ 123 (124)
T cd04608 67 KQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKE-KQEKPIGIVTKIDLLSY 123 (124)
T ss_pred ccceecCCCCCHHHHHhhcccCCceEEEeccccccccccc-cccceEEEEehhHhhhh
Confidence 34666777777777766443 33455556555 44899999999999875
No 224
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=67.22 E-value=8.3 Score=38.87 Aligned_cols=47 Identities=17% Similarity=0.258 Sum_probs=42.3
Q ss_pred CCeEEEcccchHHHHHHHHHHcCCCeeccccCC--CCceeeeechHHHH
Q 024154 165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDF--KGRFVGVLSALDFI 211 (271)
Q Consensus 165 ~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~--~~~f~G~lt~tD~i 211 (271)
...++++-+.++.+|...|.++++...|+-|.. .++++|++|..|+.
T Consensus 104 ~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~ 152 (495)
T PTZ00314 104 MDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDID 152 (495)
T ss_pred cCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHh
Confidence 456789999999999999999999999999975 48999999999975
No 225
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=63.23 E-value=11 Score=36.68 Aligned_cols=53 Identities=15% Similarity=0.281 Sum_probs=40.3
Q ss_pred cccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHH
Q 024154 156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILIL 214 (271)
Q Consensus 156 tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il 214 (271)
++.|++- ..+++++.+.++..|+..|.+++. ++ -+. .++++||||..|+++.|
T Consensus 401 ~v~~im~--~~~~~v~~~~~l~~a~~~~~~~~~--~v-V~~-~g~liGvvt~~dll~~l 453 (454)
T TIGR01137 401 AVSKVMS--KKFIQIGEGEKLSDLSKFLEKNSS--AI-VTE-EGKPIGVVTKIDLLSFL 453 (454)
T ss_pred CHHHhcC--CCCeEECCcCcHHHHHHHHHHCCe--eE-EEE-CCEEEEEEEHHHHHHhh
Confidence 4666663 456788889999999999988763 33 343 47899999999999865
No 226
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=62.51 E-value=26 Score=29.25 Aligned_cols=50 Identities=16% Similarity=0.212 Sum_probs=34.2
Q ss_pred cceEEEEEecCC-CceEEEEeccCCCCC-CCCCCCCCCCCCeEEEEEecCCceEEEE
Q 024154 19 ILVPVRFIWPNG-GRRVSLSGSFTRWSE-PMPMSPSEGCPAVFQIICRLPPGHHQYK 73 (271)
Q Consensus 19 ~~vpVtF~w~~~-ak~V~V~GsF~nW~~-~ipM~k~~~~~g~f~~~~~LppG~yeYK 73 (271)
.--+|+|+|... +.+|...++..-|.. .++... +..|+.+.+- ||.|.|+
T Consensus 60 pGDTVtw~~~d~~~Hnv~~~~~~~~~g~~~~~~~~----~~s~~~Tfe~-~G~Y~Y~ 111 (128)
T COG3794 60 PGDTVTWVNTDSVGHNVTAVGGMDPEGSGTLKAGI----NESFTHTFET-PGEYTYY 111 (128)
T ss_pred CCCEEEEEECCCCCceEEEeCCCCcccccccccCC----CcceEEEecc-cceEEEE
Confidence 346789999987 899999988854433 222221 2357777664 9999985
No 227
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=59.53 E-value=17 Score=36.48 Aligned_cols=51 Identities=20% Similarity=0.313 Sum_probs=42.6
Q ss_pred eEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHHhc
Q 024154 167 VTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELG 218 (271)
Q Consensus 167 ~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~~~ 218 (271)
++.+..+.....+-...-++++.++|+=|.. ++.+|++|+-|.|.+|..=.
T Consensus 206 ~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~-~~LiG~itiDDiidvi~eEa 256 (451)
T COG2239 206 VVSVLADDDQEEVARLFEKYDLLAVPVVDED-NRLIGIITIDDIIDVIEEEA 256 (451)
T ss_pred ceeecccCCHHHHHHHHHHhCCeecceECCC-CceeeeeeHHHHHHHHHHHH
Confidence 4555666667778888889999999999987 78999999999999998643
No 228
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=56.71 E-value=21 Score=35.95 Aligned_cols=56 Identities=14% Similarity=0.179 Sum_probs=45.1
Q ss_pred hhhccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHH
Q 024154 152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFI 211 (271)
Q Consensus 152 l~~~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i 211 (271)
++.-+.++++ ....+.+..+.++.+|...|.++++..+|+-|. ++++|++|..|+.
T Consensus 85 v~~VKv~eim--~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~--gklvGIVT~rDL~ 140 (475)
T TIGR01303 85 VAFVKSRDLV--LDTPITLAPHDTVSDAMALIHKRAHGAAVVILE--DRPVGLVTDSDLL 140 (475)
T ss_pred Hhhcchhhcc--ccCCeEECCCCCHHHHHHHHHhcCCeEEEEEEC--CEEEEEEEHHHhh
Confidence 3344455653 346788999999999999999999999999885 5899999999964
No 229
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=54.88 E-value=27 Score=33.68 Aligned_cols=65 Identities=26% Similarity=0.400 Sum_probs=51.2
Q ss_pred hhhhccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHHhc
Q 024154 151 FLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELG 218 (271)
Q Consensus 151 fl~~~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~~~ 218 (271)
||+.-+.=++| +.+++..--+-+.-..+..|-+-|.-+.|+-|.+ +..||++|.||.|..|.+-+
T Consensus 311 ~~~~~~vk~im--t~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~-g~lvGIvsQtDliaal~r~~ 375 (382)
T COG3448 311 FLRPPTVKGIM--TTPVVTVRPDTPAVELVPRLADEGLHALPVLDAA-GKLVGIVSQTDLIAALYRNW 375 (382)
T ss_pred ccCCCcccccc--cCcceeecCCCcHHHHHHHhhcCCcceeeEEcCC-CcEEEEeeHHHHHHHHHHHH
Confidence 44444444433 4566677777889999999999999999999976 89999999999999876554
No 230
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=53.17 E-value=40 Score=32.60 Aligned_cols=49 Identities=18% Similarity=0.410 Sum_probs=41.7
Q ss_pred CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHH
Q 024154 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRE 216 (271)
Q Consensus 166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~ 216 (271)
.+..+..+-+++.|+..+.+++.. .|+-|.+ +.++|++|..+++..|..
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~-~~~~g~i~~~~~~~~~~~ 359 (363)
T TIGR01186 311 DIYTVDAGTLLRETVRKVLKAGIK-VPVVDED-QRLVGIVTRGSLVDALYD 359 (363)
T ss_pred CCceECCCCcHHHHHHHHHhCCCC-EEEECCC-CcEEEEEEHHHHHHHHHh
Confidence 345678888999999999999998 7776765 899999999999998864
No 231
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=50.14 E-value=22 Score=35.99 Aligned_cols=44 Identities=16% Similarity=0.364 Sum_probs=39.8
Q ss_pred EEEcccchHHHHHHHHHHcCCCeeccccCC--CCceeeeechHHHH
Q 024154 168 TALDVNLAVKQAFHVLYEQGLPMVPLWDDF--KGRFVGVLSALDFI 211 (271)
Q Consensus 168 vv~D~~l~v~~Af~al~~~g~~~aplwds~--~~~f~G~lt~tD~i 211 (271)
.++.-+.++++|...|.++++..+|+=|.. .++++|++|..|+.
T Consensus 108 ~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr 153 (502)
T PRK07107 108 SNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYR 153 (502)
T ss_pred CEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhh
Confidence 478899999999999999999999999863 68999999999975
No 232
>PRK10785 maltodextrin glucosidase; Provisional
Probab=47.96 E-value=57 Score=33.61 Aligned_cols=61 Identities=15% Similarity=0.182 Sum_probs=39.9
Q ss_pred cceEEEEEecCC--CceEEEEeccCCCCCCCCCCCCCCCC--CeEEEEEecC--CceEEEEEEE--cCe
Q 024154 19 ILVPVRFIWPNG--GRRVSLSGSFTRWSEPMPMSPSEGCP--AVFQIICRLP--PGHHQYKFYV--DGE 79 (271)
Q Consensus 19 ~~vpVtF~w~~~--ak~V~V~GsF~nW~~~ipM~k~~~~~--g~f~~~~~Lp--pG~yeYKFiV--DG~ 79 (271)
..+.++++-..+ .++|.|.-..++-....+|.+..... ..|++++.++ ++++.|.|.+ +|+
T Consensus 19 ~~~~~~lr~~~~~~~~~v~l~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~Y~F~l~~~~~ 87 (598)
T PRK10785 19 DQLLITLWLTGEDPPQRVMLRCEPDNEEYLLPMEKQRSQPQVTAWRASLPLNSGQPRRRYSFKLLWHDR 87 (598)
T ss_pred CEEEEEEEEcCCCceEEEEEEEEcCCCEEEEEeEEeecCCCceEEEEEEEcCCCCceEEEEEEEEeCCE
Confidence 345566655432 57888876555544457898754222 3588888875 6889999988 553
No 233
>smart00526 H15 Domain in histone families 1 and 5.
Probab=47.47 E-value=30 Score=24.79 Aligned_cols=37 Identities=24% Similarity=0.395 Sum_probs=29.3
Q ss_pred hHHHHHHhhhhccccccCCCCCCeEEEcccchHHHHHHHHHHcCCC
Q 024154 144 SRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLP 189 (271)
Q Consensus 144 ~~~~~~~fl~~~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~ 189 (271)
++..|+.|++.+ |++.|... +--+++|+..++++|..
T Consensus 25 S~~aI~kyi~~~--~~~~~~~~-------~~~l~~~Lk~~v~~G~l 61 (66)
T smart00526 25 SLQAIKKYIEAN--YKVLPNNF-------RSLLKLALKKLVASGKL 61 (66)
T ss_pred CHHHHHHHHHHh--CCCChHHH-------HHHHHHHHHHHHhcCce
Confidence 677999999998 98776432 34588999999999964
No 234
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=47.46 E-value=15 Score=37.93 Aligned_cols=47 Identities=21% Similarity=0.482 Sum_probs=32.0
Q ss_pred CCCCCCCCCCCCCCCeEEEEEecCCc-eEEEEEEEcC----eeecCCCCCeee
Q 024154 43 WSEPMPMSPSEGCPAVFQIICRLPPG-HHQYKFYVDG----EWRHDENQPHVS 90 (271)
Q Consensus 43 W~~~ipM~k~~~~~g~f~~~~~LppG-~yeYKFiVDG----~W~~Dp~~P~v~ 90 (271)
|+. +.+.|..-.+|.+-+.|+++|| .|.|+|.|++ -|-|......-.
T Consensus 85 WhG-v~q~kn~w~DG~~~TqCPI~Pg~~~tY~F~v~~q~GT~~yh~h~~~~Ra 136 (563)
T KOG1263|consen 85 WHG-VRQRKNPWQDGVYITQCPIQPGENFTYRFTVKDQIGTLWYHSHVSWQRA 136 (563)
T ss_pred ecc-ccccCCccccCCccccCCcCCCCeEEEEEEeCCcceeEEEeeccccccc
Confidence 654 4445543346777788999998 6999999995 365655554433
No 235
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=43.33 E-value=66 Score=31.77 Aligned_cols=63 Identities=21% Similarity=0.292 Sum_probs=47.0
Q ss_pred HHHHhh--hhccccccCCCCCCeEEEcccchHHHHHHHHHH-----cCCCeeccccCCCCceeeeechHHHHH
Q 024154 147 RISSFL--STHTVYELLPDSGKVTALDVNLAVKQAFHVLYE-----QGLPMVPLWDDFKGRFVGVLSALDFIL 212 (271)
Q Consensus 147 ~~~~fl--~~~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~-----~g~~~aplwds~~~~f~G~lt~tD~i~ 212 (271)
.++..+ ...++-++|- ..++.++.+.++++|+..+.+ +++..+++=|. .++++|+++..|++.
T Consensus 121 ~i~~ll~~~e~tvg~iMt--~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~-~~~l~GvV~l~dLl~ 190 (449)
T TIGR00400 121 AINLLLSYSDDSAGRIMT--IEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNE-SKHLKGVLSIRDLIL 190 (449)
T ss_pred HHHHHhCCCcchHHHhCc--CceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECC-CCeEEEEEEHHHHhc
Confidence 455554 4567778774 678999999999999999975 34445555454 588999999999863
No 236
>TIGR03503 conserved hypothetical protein TIGR03503. This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.
Probab=41.51 E-value=63 Score=31.75 Aligned_cols=41 Identities=12% Similarity=0.179 Sum_probs=27.9
Q ss_pred EEEeccCCCCCCCCCCCCCCCCCeEEEEEe--cCCceEEEEEEEcC
Q 024154 35 SLSGSFTRWSEPMPMSPSEGCPAVFQIICR--LPPGHHQYKFYVDG 78 (271)
Q Consensus 35 ~V~GsF~nW~~~ipM~k~~~~~g~f~~~~~--LppG~yeYKFiVDG 78 (271)
.++|+|.+=- ..+.... .+|+|+..+. .+||.|+.++.+||
T Consensus 152 ~vvg~f~DdG--~g~DE~p-~DGvFT~~l~l~~~~G~Y~~~v~~~n 194 (374)
T TIGR03503 152 IVVGEFEDDG--EGLDERP-GDGIFTGEFNLDVAPGEYRPTYQSRN 194 (374)
T ss_pred EEEEeeccCC--ccCCCCC-CCceEEEEeeccCCCceEEEEEEEcC
Confidence 4667775332 2232111 3799998876 57899999999998
No 237
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=41.15 E-value=1.1e+02 Score=24.85 Aligned_cols=25 Identities=16% Similarity=0.114 Sum_probs=16.0
Q ss_pred CCCCCCCcceEEEEEecCCCceEEE
Q 024154 12 NSGVVGSILVPVRFIWPNGGRRVSL 36 (271)
Q Consensus 12 ~~~~~~~~~vpVtF~w~~~ak~V~V 36 (271)
|..+.=..--+|+|+|...+.+|..
T Consensus 14 P~~v~V~~GdTV~f~n~d~~Hnv~~ 38 (116)
T TIGR02375 14 PAYIRAAPGDTVTFVPTDKGHNVET 38 (116)
T ss_pred CCEEEECCCCEEEEEECCCCeeEEE
Confidence 4444444456789999877766654
No 238
>PLN00115 pollen allergen group 3; Provisional
Probab=38.81 E-value=1.2e+02 Score=25.07 Aligned_cols=47 Identities=17% Similarity=0.327 Sum_probs=32.8
Q ss_pred CceEEEEecc-CCCCCCCCCCCCCCCCCeEEEEEec-CCceEEEEEEEc-Ceee
Q 024154 31 GRRVSLSGSF-TRWSEPMPMSPSEGCPAVFQIICRL-PPGHHQYKFYVD-GEWR 81 (271)
Q Consensus 31 ak~V~V~GsF-~nW~~~ipM~k~~~~~g~f~~~~~L-ppG~yeYKFiVD-G~W~ 81 (271)
-..|.|.++- .+|. .+|++.- ...|++...- +.|-+.+||... |.+.
T Consensus 47 I~~V~Ik~~g~~~W~--~~M~rsw--GavW~~~s~~pl~GPlS~R~t~~~G~~~ 96 (118)
T PLN00115 47 ISEVEIKEKGAKDWV--DDLKESS--TNTWTLKSKAPLKGPFSVRFLVKGGGYR 96 (118)
T ss_pred EEEEEEeecCCCccc--CccccCc--cceeEecCCCCCCCceEEEEEEeCCCEE
Confidence 4788998863 4783 2798875 4589886643 347899999885 6553
No 239
>KOG0045 consensus Cytosolic Ca2+-dependent cysteine protease (calpain), large subunit (EF-Hand protein superfamily) [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=37.57 E-value=30 Score=36.00 Aligned_cols=26 Identities=31% Similarity=0.800 Sum_probs=21.9
Q ss_pred CCceEEEEEEEcCeee---cCCCCCeeeC
Q 024154 66 PPGHHQYKFYVDGEWR---HDENQPHVSG 91 (271)
Q Consensus 66 ppG~yeYKFiVDG~W~---~Dp~~P~v~d 91 (271)
..|+|++||.++|+|+ .|...|+..+
T Consensus 115 yaGif~f~~w~~G~W~~VvIDD~LP~~~~ 143 (612)
T KOG0045|consen 115 YAGIFHFRFWQNGEWVEVVIDDRLPTSNG 143 (612)
T ss_pred cceEEEEEEEeCCeEEEEEeeeecceEcC
Confidence 5699999999999994 6788888664
No 240
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=36.59 E-value=60 Score=33.70 Aligned_cols=57 Identities=18% Similarity=0.324 Sum_probs=45.0
Q ss_pred ccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154 155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR 215 (271)
Q Consensus 155 ~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~ 215 (271)
-+.|++|- .-++.+|-.-.+=.|.-.|..|+|.-.|+- +.+|.+||||.+|++....
T Consensus 214 ~~V~evmT--~p~~svd~~~~~feAml~m~r~~I~hl~V~--e~gq~~Gilt~~dIl~l~s 270 (610)
T COG2905 214 QKVSEVMT--SPVISVDRGDFLFEAMLMMLRNRIKHLPVT--EDGQPLGILTLTDILRLFS 270 (610)
T ss_pred cchhhhhc--cCceeecCcchHHHHHHHHHHhCCceeeee--cCCeeeEEeeHHHHHHhhC
Confidence 34444442 457888888888899999999999999986 5689999999999886543
No 241
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=35.53 E-value=47 Score=31.11 Aligned_cols=67 Identities=19% Similarity=0.386 Sum_probs=55.5
Q ss_pred HHHHHHhHHHHHHhhhhccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHH
Q 024154 138 EADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILI 213 (271)
Q Consensus 138 ~~~~~~~~~~~~~fl~~~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~i 213 (271)
++-++.+...+++.| +|. ++++.+..+-.....+..+++....--|+..-.+-...|+|-+-|.+..
T Consensus 59 EGvm~iadl~vrDiM--------IPR-SQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~ 125 (293)
T COG4535 59 EGVMDIADLRVRDIM--------IPR-SQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPF 125 (293)
T ss_pred HHHHHHHHhhHhhhc--------ccH-HHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHH
Confidence 555555555666655 565 4788999999999999999999999999999999999999999997654
No 242
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=35.49 E-value=65 Score=28.74 Aligned_cols=48 Identities=17% Similarity=0.306 Sum_probs=38.6
Q ss_pred cccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeec
Q 024154 156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLS 206 (271)
Q Consensus 156 tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt 206 (271)
++-|++. ..+++++.+-++.+|+..|.++++...|+=|.+ ++++|+++
T Consensus 221 ~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~l~GvI~ 268 (268)
T TIGR00393 221 EVRDFMT--LGPKTFKLDALLLEALEFLERRKITSLVVVDDH-NKVLGVLH 268 (268)
T ss_pred cHHHhCC--CCCeEECCCCcHHHHHHHHHHcCCcEEEEECCC-CeEEEEEC
Confidence 3555553 347788999999999999999999999997754 57999974
No 243
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=34.16 E-value=93 Score=30.75 Aligned_cols=51 Identities=16% Similarity=0.363 Sum_probs=44.1
Q ss_pred EEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHHhccC
Q 024154 169 ALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTN 220 (271)
Q Consensus 169 v~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~~~~~ 220 (271)
..-.+.+|..+-+.|+--|+...|+-|+. +..+||+|-.|.+.-||+..+.
T Consensus 261 tv~~~tsVAsvaq~MiwE~iem~PVv~~n-~~llGiitR~dvlk~lq~~q~q 311 (432)
T COG4109 261 TVRAKTSVASVAQMMIWEGIEMLPVVDSN-NTLLGIITRQDVLKSLQMIQRQ 311 (432)
T ss_pred eecccchHHHHHHHHHhccceeeeEEcCC-ceEEEEEEHHHHHHHHHHhccC
Confidence 33445667778889999999999999987 7899999999999999999876
No 244
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=33.86 E-value=1e+02 Score=27.27 Aligned_cols=60 Identities=15% Similarity=0.355 Sum_probs=51.1
Q ss_pred hccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHHh
Q 024154 154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILREL 217 (271)
Q Consensus 154 ~~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~~ 217 (271)
.-+|=.+| ++-+|..-.+=++.+|.+.|...|+.--|+-+. ...||-+|-.|+.+.+++-
T Consensus 64 ~ita~~iM--~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~--~k~VGsItE~~iv~~~le~ 123 (187)
T COG3620 64 RITAKTIM--HSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE--DKVVGSITENDIVRALLEG 123 (187)
T ss_pred eEeHhhhc--cCCeeEECchhhHHHHHHHHHHcCCccCceeeC--CeeeeeecHHHHHHHHhcc
Confidence 44666665 467888888899999999999999999999988 7899999999999887543
No 245
>PRK11573 hypothetical protein; Provisional
Probab=33.55 E-value=75 Score=31.22 Aligned_cols=48 Identities=8% Similarity=0.151 Sum_probs=39.8
Q ss_pred eEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154 167 VTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR 215 (271)
Q Consensus 167 ~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~ 215 (271)
...+--+.++.+++..|.+++...|.+=|-- +..+|++|..|.+.-|.
T Consensus 264 ~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEy-G~~~GiVTleDilEeiv 311 (413)
T PRK11573 264 IYFVPEGTPLSTQLVKFQRNKKKVGLVVDEY-GDIQGLVTVEDILEEIV 311 (413)
T ss_pred CeEeCCCCcHHHHHHHHHhcCCeEEEEEecC-CCeEEEeeHHHHHHHHh
Confidence 4445556678999999999999999888764 78999999999998554
No 246
>PRK10239 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase; Provisional
Probab=33.20 E-value=30 Score=29.79 Aligned_cols=69 Identities=25% Similarity=0.251 Sum_probs=46.7
Q ss_pred eEEEcccch-----HHHHHHHHHHc-CCC---eeccccCCCCceeeeechHHHHHHHHHhccCCCCcchhhhhccchhHH
Q 024154 167 VTALDVNLA-----VKQAFHVLYEQ-GLP---MVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAW 237 (271)
Q Consensus 167 ~vv~D~~l~-----v~~Af~al~~~-g~~---~aplwds~~~~f~G~lt~tD~i~il~~~~~~~~~~~~~~le~~~I~~~ 237 (271)
+|.|-+++. +++|+..|-+. ++. ..++|-+.- +|.-...||+|........ ++..+| ++.+
T Consensus 5 ~i~lGSN~g~~~~~l~~A~~~L~~~~~~~i~~~S~~y~T~P---~g~~~q~~FlN~v~~i~T~---l~p~~L----l~~l 74 (159)
T PRK10239 5 YIAIGSNLASPLEQVNAALKALGDIPESRILAVSSFYRTPP---LGPQDQPDYLNAAVALETA---LAPEEL----LNHT 74 (159)
T ss_pred EEEEeCchhhHHHHHHHHHHHHhcCCCCeEEEECCCEEeCC---CCCCCCCCceEEEEEEEeC---CCHHHH----HHHH
Confidence 466667775 88899988775 554 566666553 4666777888866665543 344553 3678
Q ss_pred HHHHHhhh
Q 024154 238 KVGKLQLN 245 (271)
Q Consensus 238 re~~~~~~ 245 (271)
++++++++
T Consensus 75 ~~IE~~~G 82 (159)
T PRK10239 75 QRIELQQG 82 (159)
T ss_pred HHHHHHhC
Confidence 88988887
No 247
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=32.55 E-value=52 Score=32.60 Aligned_cols=66 Identities=21% Similarity=0.370 Sum_probs=58.3
Q ss_pred hhhccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHHh
Q 024154 152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILREL 217 (271)
Q Consensus 152 l~~~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~~ 217 (271)
|..-|.-|+|=.-..++.+|.+.+.+.-...|...-+--.|||--+.-+.+|||-+.|..+.|.+.
T Consensus 197 Le~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~ 262 (423)
T COG4536 197 LENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEK 262 (423)
T ss_pred cccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhcc
Confidence 356678888877889999999999999999999999989999999999999999999988777544
No 248
>PF14681 UPRTase: Uracil phosphoribosyltransferase; PDB: 1V9S_B 1UPF_A 1UPU_D 1JLR_B 1BD4_A 1BD3_C 1JLS_D 1XTV_C 1XTU_H 3G6W_C ....
Probab=32.44 E-value=75 Score=28.05 Aligned_cols=56 Identities=25% Similarity=0.275 Sum_probs=42.3
Q ss_pred cccCCC---CCCeEEEc----ccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHHhcc
Q 024154 158 YELLPD---SGKVTALD----VNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGT 219 (271)
Q Consensus 158 Yd~lP~---s~k~vv~D----~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~~~~ 219 (271)
|.-||. +.+|+++| |.=++-+|+..|.++|+ ..++=.|+.+++...=|+-|+.-+-
T Consensus 112 y~~LP~~i~~~~VillDpmlaTG~s~~~ai~~L~~~G~------~~~~I~~v~~ias~~Gl~~l~~~~P 174 (207)
T PF14681_consen 112 YNKLPEDIENRKVILLDPMLATGGSAIAAIEILKEHGV------PEENIIIVSVIASPEGLERLLKAFP 174 (207)
T ss_dssp EEE--TTGTTSEEEEEESEESSSHHHHHHHHHHHHTTG-------GGEEEEEEEEEEHHHHHHHHHHST
T ss_pred HhhCCCCccCCEEEEEeccccchhhHHHHHHHHHHcCC------CcceEEEEEEEecHHHHHHHHHhCC
Confidence 444666 48899999 55579999999999994 4556679999999998887776653
No 249
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=32.00 E-value=29 Score=26.89 Aligned_cols=16 Identities=19% Similarity=0.440 Sum_probs=9.5
Q ss_pred CeEEEEE-ecCCceEEE
Q 024154 57 AVFQIIC-RLPPGHHQY 72 (271)
Q Consensus 57 g~f~~~~-~LppG~yeY 72 (271)
...++++ .+.||.|+|
T Consensus 74 ~~~~~~f~~~~~G~y~~ 90 (104)
T PF13473_consen 74 ETATVTFTPLKPGEYEF 90 (104)
T ss_dssp -EEEEEEEE-S-EEEEE
T ss_pred CEEEEEEcCCCCEEEEE
Confidence 3566664 689999888
No 250
>COG1926 Predicted phosphoribosyltransferases [General function prediction only]
Probab=31.92 E-value=1.2e+02 Score=27.74 Aligned_cols=74 Identities=18% Similarity=0.130 Sum_probs=49.6
Q ss_pred HhHHHHHHhhhhccccccCCCCCC-eEEEc----ccchHHHHHHHHHHcCC----Ceecccc--------CCCCceeeee
Q 024154 143 LSRDRISSFLSTHTVYELLPDSGK-VTALD----VNLAVKQAFHVLYEQGL----PMVPLWD--------DFKGRFVGVL 205 (271)
Q Consensus 143 ~~~~~~~~fl~~~tcYd~lP~s~k-~vv~D----~~l~v~~Af~al~~~g~----~~aplwd--------s~~~~f~G~l 205 (271)
|-......|.+.+.-. ..++| ||+.| |.-+++-|+.++..++- .++|+-- ++--++|.+.
T Consensus 105 El~rrr~~yr~~~~~~---~~~g~~VIlVDDGiATGatm~aAi~~~r~~~~~~IviAVPV~p~~a~~~l~s~~D~vvc~~ 181 (220)
T COG1926 105 ELLRRREAYRGGRPVP---SLKGRTVILVDDGIATGATMKAAVRALRAKGPKEIVIAVPVAPEDAAAELESEADEVVCLY 181 (220)
T ss_pred HHHHHHHHHcCCCCCC---CCCCCEEEEEeCCcchhHHHHHHHHHHHhcCCceEEEEcccCCHHHHHHHHhhcCeEEEEc
Confidence 3333444444454444 44555 55556 67789999999999883 4555543 3457899999
Q ss_pred chHHHHHHHHHhcc
Q 024154 206 SALDFILILRELGT 219 (271)
Q Consensus 206 t~tD~i~il~~~~~ 219 (271)
+.++|-.+=++|..
T Consensus 182 ~P~~F~AVg~~Y~d 195 (220)
T COG1926 182 MPAPFEAVGEFYRD 195 (220)
T ss_pred CCccHHHHHHHHHH
Confidence 99999988887754
No 251
>PF14347 DUF4399: Domain of unknown function (DUF4399)
Probab=30.60 E-value=1e+02 Score=23.88 Aligned_cols=32 Identities=25% Similarity=0.501 Sum_probs=24.2
Q ss_pred CCeEEEEEecCCceEEEEEEEcCeeecCCCCCe
Q 024154 56 PAVFQIICRLPPGHHQYKFYVDGEWRHDENQPH 88 (271)
Q Consensus 56 ~g~f~~~~~LppG~yeYKFiVDG~W~~Dp~~P~ 88 (271)
.|.=++.++|+||.|....+. |.+.+-|..|.
T Consensus 50 ~Gqte~~I~L~PG~htLtl~~-~d~~h~~~~~~ 81 (87)
T PF14347_consen 50 KGQTELNIELPPGKHTLTLQL-GDGDHVPHDPP 81 (87)
T ss_pred CCEEEEEEEeCCCCEEEEEEe-CCCCcccCCCc
Confidence 466678899999999999887 44566666554
No 252
>PRK14092 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
Probab=30.14 E-value=60 Score=28.05 Aligned_cols=73 Identities=19% Similarity=0.256 Sum_probs=49.9
Q ss_pred CCCCC-eEEEcccc-----hHHHHHHHHHHc-CCC---eeccccCCCCceeeeechHHHHHHHHHhccCCCCcchhhhhc
Q 024154 162 PDSGK-VTALDVNL-----AVKQAFHVLYEQ-GLP---MVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELET 231 (271)
Q Consensus 162 P~s~k-~vv~D~~l-----~v~~Af~al~~~-g~~---~aplwds~~~~f~G~lt~tD~i~il~~~~~~~~~~~~~~le~ 231 (271)
|.|.+ +|.|.+++ .+++|+..|-+. |+. ..++|-++.- |. ...||+|........ ++.++|
T Consensus 5 ~~~~~v~i~LGSNlg~~~~~l~~A~~~L~~~~~~~~~~~S~~y~T~P~---g~-~q~dFlN~vv~~~T~---l~p~~L-- 75 (163)
T PRK14092 5 PASALAYVGLGANLGDAAATLRSVLAELAAAPGILACKASRLYRTAPV---DA-QGPDFVNAVAALDTT---LAPLDL-- 75 (163)
T ss_pred CcCCEEEEEecCchHhHHHHHHHHHHHHHhCCCCeeEEECCCEEeCCC---CC-CCCchhEEEEEEEeC---CCHHHH--
Confidence 55555 57788888 588999999774 444 4666666543 54 456899877666553 445554
Q ss_pred cchhHHHHHHHhhh
Q 024154 232 HTISAWKVGKLQLN 245 (271)
Q Consensus 232 ~~I~~~re~~~~~~ 245 (271)
++.++.++++++
T Consensus 76 --l~~L~~IE~~~G 87 (163)
T PRK14092 76 --LDLLQALEQRHG 87 (163)
T ss_pred --HHHHHHHHHHcC
Confidence 477889999887
No 253
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=29.18 E-value=2.6e+02 Score=22.68 Aligned_cols=48 Identities=19% Similarity=0.249 Sum_probs=24.7
Q ss_pred ceEEEEEecCC--CceEEEEeccCCCCCCC-CCCCCCCCCCeEEEEEecCCceEEEE
Q 024154 20 LVPVRFIWPNG--GRRVSLSGSFTRWSEPM-PMSPSEGCPAVFQIICRLPPGHHQYK 73 (271)
Q Consensus 20 ~vpVtF~w~~~--ak~V~V~GsF~nW~~~i-pM~k~~~~~g~f~~~~~LppG~yeYK 73 (271)
--+|+|+|+.. +.+|...+ -..|.... .+.. ...|+.++. .||.|.|.
T Consensus 49 GdTVtw~~~~d~~~HnV~s~~-~~~f~s~~~~~~~----G~t~s~Tf~-~~G~Y~Y~ 99 (115)
T TIGR03102 49 GTTVVWEWTGEGGGHNVVSDG-DGDLDESERVSEE----GTTYEHTFE-EPGIYLYV 99 (115)
T ss_pred CCEEEEEECCCCCCEEEEECC-CCCccccccccCC----CCEEEEEec-CCcEEEEE
Confidence 35677777653 34555331 12343211 1111 346777775 67888885
No 254
>COG1343 CRISPR-associated protein Cas2 [Defense mechanisms]
Probab=29.05 E-value=1.4e+02 Score=23.46 Aligned_cols=63 Identities=19% Similarity=0.238 Sum_probs=39.1
Q ss_pred eEEEcccch--HHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHHhccCCCCcchhhhhccchhHHH
Q 024154 167 VTALDVNLA--VKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWK 238 (271)
Q Consensus 167 ~vv~D~~l~--v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~~~~~~~~~~~~~le~~~I~~~r 238 (271)
|||.|.+.. -.+....|..+|.. |= ..+-|.|.||..|+-.|.+..-+. ..++.+..+|-..+
T Consensus 4 lvvYDI~~d~~R~~~~~~l~~~~l~----rV-QnSvFeg~l~~~~~~~l~~~~~ki----i~~~~Dsi~iy~~~ 68 (89)
T COG1343 4 LVVYDISDDGERVRKVAKLLKRGLQ----RV-QNSVFEGELTPADLEKLKRRLKKI----IDEDEDSIRIYPLR 68 (89)
T ss_pred EEEEecCCcHHHHHHHHHHHHhhhh----hh-eeeeeEEecCHHHHHHHHHHHHhh----hccccceEEEEEcc
Confidence 567776555 33333444444432 22 346799999999999999888764 23555555555443
No 255
>PF11896 DUF3416: Domain of unknown function (DUF3416); InterPro: IPR021828 This presumed domain is functionally uncharacterised. This domain is found in bacteria and archaea. This domain is about 190 amino acids in length. This domain is found associated with PF00128 from PFAM. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3ZT7_A 3ZST_B 3ZT6_A 3ZSS_D 3ZT5_B.
Probab=27.63 E-value=54 Score=29.01 Aligned_cols=40 Identities=33% Similarity=0.758 Sum_probs=22.1
Q ss_pred CCCCCCCCCCCCCCCCCeEEEEEecC-CceEEEEEE--Ec--CeeecC
Q 024154 41 TRWSEPMPMSPSEGCPAVFQIICRLP-PGHHQYKFY--VD--GEWRHD 83 (271)
Q Consensus 41 ~nW~~~ipM~k~~~~~g~f~~~~~Lp-pG~yeYKFi--VD--G~W~~D 83 (271)
..|+. +||.... +..|+..+.+. +|.|+|+.. +| +.|+++
T Consensus 55 ~~w~~-vpM~~~g--nDrW~a~f~~~~~G~~~f~VeAW~D~faTW~~~ 99 (187)
T PF11896_consen 55 REWQE-VPMTPLG--NDRWEASFTPDRPGRYEFRVEAWVDHFATWRHD 99 (187)
T ss_dssp -B-----B-EEST--S-EEEEEEE--SSEEEEEEEEEEE-HHHHHHHH
T ss_pred Cccee-eccccCC--CCEEEEEEECCCceeEEEEEEEEeccHHHHHHh
Confidence 45876 8999874 77999998864 599999876 34 245553
No 256
>TIGR01004 PulS_OutS lipoprotein, PulS/OutS family. This family comprises lipoproteins from four gamma proteobacterial species: PulS protein of Klebsiella pneumoniae, the OutS protein of Erwinia chrysanthemi and Pectobacterium chrysanthemi, and the functionally uncharacterized E. coli protein EtpO. PulS and OutS have been shown to interact with and facilitate insertion of secretins into the outer membrane, suggesting a chaperone-like, or piloting function for members of this family.
Probab=24.01 E-value=95 Score=26.05 Aligned_cols=50 Identities=26% Similarity=0.369 Sum_probs=40.1
Q ss_pred cHHHHHHhHHHHHHhhhhccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCc
Q 024154 137 SEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGR 200 (271)
Q Consensus 137 s~~~~~~~~~~~~~fl~~~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~ 200 (271)
.+.|+-.++-+...|||.+--|.=+|....+ ++.|+....++| ||....+
T Consensus 37 ~q~eqLA~L~A~~~YLK~~C~rsdiPd~~~I--------~raai~~A~~~g------Wd~~~y~ 86 (128)
T TIGR01004 37 EQLEQLASIVAASRYLKMQCNRSDLPDDGSI--------LKTANNVAIGKG------WDSGRQE 86 (128)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccCCcHHHH--------HHHHHHHHHHcC------CchhhHH
Confidence 4566666788889999999999999988765 777888888888 9887433
No 257
>cd00483 HPPK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is HPPK which catalyzes pyrophosphoryl transfer from ATP to 6-hydroxymethyl-7,8-dihydropterin (HP). The functional enzyme is a monomer. Mammals lack many of the enzymes in the folate pathway including, HPPK.
Probab=22.03 E-value=1.2e+02 Score=24.92 Aligned_cols=69 Identities=30% Similarity=0.381 Sum_probs=46.0
Q ss_pred eEEEcccch-----HHHHHHHHHHc----CCCeeccccCCCCceeeeechHHHHHHHHHhccCCCCcchhhhhccchhHH
Q 024154 167 VTALDVNLA-----VKQAFHVLYEQ----GLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAW 237 (271)
Q Consensus 167 ~vv~D~~l~-----v~~Af~al~~~----g~~~aplwds~~~~f~G~lt~tD~i~il~~~~~~~~~~~~~~le~~~I~~~ 237 (271)
+|.|.+++. +++|+..|-+. -+...++|-++ -+|.-...||+|........ ++.++| ++.+
T Consensus 2 ~i~LGSN~~~~~~~l~~A~~~L~~~~~~~~~~~S~~y~T~---p~g~~~~~~FlN~v~~~~T~---l~p~~L----l~~l 71 (128)
T cd00483 2 YLALGSNLGDRLANLRAALRALAALPGIEILAVSPLYETA---PVGFTDQPDFLNAVVELETS---LSPLEL----LDAL 71 (128)
T ss_pred EEEEeCCcHhHHHHHHHHHHHHHcCCCCCceEECCCEEeC---CCCCCCChHHHheEEEEEEC---CCHHHH----HHHH
Confidence 355666654 78888888765 23446666655 34666888999987777653 344553 4568
Q ss_pred HHHHHhhh
Q 024154 238 KVGKLQLN 245 (271)
Q Consensus 238 re~~~~~~ 245 (271)
+.++++++
T Consensus 72 ~~IE~~~G 79 (128)
T cd00483 72 QAIEQRLG 79 (128)
T ss_pred HHHHHHhC
Confidence 88998887
No 258
>PF11232 Med25: Mediator complex subunit 25 PTOV activation and synapsin 2; InterPro: IPR021394 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-active part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. The overall function of the full-length Med25 is efficiently to coordinate the transcriptional activation of RAR/RXR (retinoic acid receptor/retinoic X receptor) in higher eukaryotic cells. Human Med25 consists of several domains with different binding properties, the N-terminal, VWA domain, an SD1 - synapsin 1 - domain from residues 229-381, a PTOV(B) or ACID domain from 395-545, an SD2 domain from residues 564-645 and a C-terminal NR box-containing domain (646-650) from 646-747. This family is the combined PTOV and SD2 domains. the PTOV domain being the domain through which Med25 co-operates with the histone acetyltransferase CBP, but the function of the SD2 domain is unclear []. ; PDB: 2KY6_A 2L23_A 2XNF_A 2L6U_A.
Probab=21.84 E-value=1.1e+02 Score=26.26 Aligned_cols=56 Identities=14% Similarity=0.269 Sum_probs=38.9
Q ss_pred CCCCeEEEcc--cchHHHHHHHHHHcCCCee---------------ccccCCCCceeeeech--HHHHHHHHHhc
Q 024154 163 DSGKVTALDV--NLAVKQAFHVLYEQGLPMV---------------PLWDDFKGRFVGVLSA--LDFILILRELG 218 (271)
Q Consensus 163 ~s~k~vv~D~--~l~v~~Af~al~~~g~~~a---------------plwds~~~~f~G~lt~--tD~i~il~~~~ 218 (271)
..+|+|+|-. +.-..+++.++..||...+ .||.++++.|.|++-- ..|..-|+.-+
T Consensus 72 kns~~v~f~~~~~~E~l~~L~~im~ng~~GcvhF~~~p~c~iKvL~LlYs~kk~~flG~IP~DQ~~Fv~~lr~Vi 146 (152)
T PF11232_consen 72 KNSRSVVFHFTTDCESLKSLYRIMSNGFAGCVHFSSNPPCEIKVLMLLYSPKKKAFLGFIPNDQEGFVNRLRQVI 146 (152)
T ss_dssp SSEEEEEEEESS-HHHHHHHHHHHHCCEEEEEE--STSSSS-SEEEEEEETTTTEEEEEEESTHHHHHHHHHHHC
T ss_pred hcCeEEEEEcCCChHHHHHHHHHhcCCeEEEEEcCCCCCCceEEEEEEEcCCCceEEEEcCCCHHHHHHHHHHHH
Confidence 3458888863 4456677777778884322 4788899999999864 67887766554
No 259
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=21.74 E-value=1.7e+02 Score=28.66 Aligned_cols=49 Identities=18% Similarity=0.283 Sum_probs=38.7
Q ss_pred eEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHHh
Q 024154 167 VTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILREL 217 (271)
Q Consensus 167 ~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~~ 217 (271)
+..+..+-+++.|+..+.+.... .|+=|. .++++|++|..+++..|..-
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~-~~~~~g~~~~~~~~~~~~~~ 395 (400)
T PRK10070 347 PLAVDAQTPLSELLSHVGQAPCA-VPVVDE-DQQYVGIISKGMLLRALDRE 395 (400)
T ss_pred CceeCCCCCHHHHHHHHHhCCCc-EEEECC-CCcEEEEEEHHHHHHHHHhc
Confidence 44566777888999999997776 555443 69999999999999988654
No 260
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=21.71 E-value=81 Score=21.82 Aligned_cols=25 Identities=36% Similarity=0.775 Sum_probs=14.2
Q ss_pred EEE-EecCCceEEEEEEE---cCeeecCC
Q 024154 60 QII-CRLPPGHHQYKFYV---DGEWRHDE 84 (271)
Q Consensus 60 ~~~-~~LppG~yeYKFiV---DG~W~~Dp 84 (271)
.+. ..|+||.|.++-.+ +|.|..+.
T Consensus 30 ~~~~~~L~~G~Y~l~V~a~~~~~~~~~~~ 58 (66)
T PF07495_consen 30 SISYTNLPPGKYTLEVRAKDNNGKWSSDE 58 (66)
T ss_dssp EEEEES--SEEEEEEEEEEETTS-B-SS-
T ss_pred EEEEEeCCCEEEEEEEEEECCCCCcCccc
Confidence 444 56999999988776 46776553
No 261
>PRK11534 DNA-binding transcriptional regulator CsiR; Provisional
Probab=21.10 E-value=1.4e+02 Score=26.00 Aligned_cols=40 Identities=23% Similarity=0.212 Sum_probs=31.7
Q ss_pred ccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHH
Q 024154 172 VNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILIL 214 (271)
Q Consensus 172 ~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il 214 (271)
+.-||+.|+..|...|+... -+.++.+|--+|..|+.++.
T Consensus 43 SRtpVREAL~~L~~eGlv~~---~~~~G~~V~~~~~~~~~ei~ 82 (224)
T PRK11534 43 GVGPLREALSQLVAERLVTV---VNQKGYRVASMSEQELLDIF 82 (224)
T ss_pred ChHHHHHHHHHHHHCCCEEE---eCCCceEeCCCCHHHHHHHH
Confidence 44689999999999998764 46778888888888776544
No 262
>smart00592 BRK domain in transcription and CHROMO domain helicases.
Probab=20.91 E-value=85 Score=21.46 Aligned_cols=19 Identities=21% Similarity=0.513 Sum_probs=16.7
Q ss_pred HHHHHhhhhccccccCCCC
Q 024154 146 DRISSFLSTHTVYELLPDS 164 (271)
Q Consensus 146 ~~~~~fl~~~tcYd~lP~s 164 (271)
..+..+|+.|--|++.|..
T Consensus 26 ~~l~~WL~~~p~yev~p~~ 44 (45)
T smart00592 26 KDLERWLEENPEYEVAPRR 44 (45)
T ss_pred HHHHHHHhcCCCcccCCCc
Confidence 4678999999999999975
No 263
>smart00230 CysPc Calpain-like thiol protease family. Calpain-like thiol protease family (peptidase family C2). Calcium activated neutral protease (large subunit).
Probab=20.54 E-value=1.2e+02 Score=28.70 Aligned_cols=25 Identities=24% Similarity=0.563 Sum_probs=20.4
Q ss_pred cCCceEEEEEEEcCeee---cCCCCCee
Q 024154 65 LPPGHHQYKFYVDGEWR---HDENQPHV 89 (271)
Q Consensus 65 LppG~yeYKFiVDG~W~---~Dp~~P~v 89 (271)
-+.|.|..||.+||.|+ .|+..|+.
T Consensus 98 ~~~G~y~vrl~~~G~w~~V~VDd~lP~~ 125 (318)
T smart00230 98 NYAGIFHFRFWRFGKWVDVVIDDRLPTY 125 (318)
T ss_pred ccCCEEEEEEEECCEEEEEEecCCCeee
Confidence 35699999999999984 67777764
No 264
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=20.42 E-value=1.4e+02 Score=24.00 Aligned_cols=33 Identities=9% Similarity=0.088 Sum_probs=29.5
Q ss_pred CCeEEEcccchHHHHHHHHHHcCCCeeccccCC
Q 024154 165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDF 197 (271)
Q Consensus 165 ~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~ 197 (271)
..++++..+-++.+|+..|.++++...|+=|..
T Consensus 86 ~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~ 118 (133)
T cd04592 86 CGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRG 118 (133)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCcCCEecCC
Confidence 357889999999999999999999999998764
No 265
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=20.20 E-value=1.2e+02 Score=26.90 Aligned_cols=59 Identities=22% Similarity=0.314 Sum_probs=37.2
Q ss_pred hhhccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHH
Q 024154 152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRE 216 (271)
Q Consensus 152 l~~~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~ 216 (271)
+.+++.-++|-+.+-.|-=|..|.|-+ +.|-++.. ..+- +.+..||++|-.|+...++.
T Consensus 127 i~~~~vr~vM~e~fP~Vs~~~~l~vI~--~LL~~~~A--VlV~--e~G~~vGIITk~DI~k~~~~ 185 (187)
T COG3620 127 IRSLRVREVMGEPFPTVSPDESLNVIS--QLLEEHPA--VLVV--ENGKVVGIITKADIMKLLAG 185 (187)
T ss_pred hhhhhHHHHhcCCCCcCCCCCCHHHHH--HHHhhCCe--EEEE--eCCceEEEEeHHHHHHHHhc
Confidence 345555566666666665566666533 33444442 2222 77899999999999987753
Done!