BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>024155
MASLVAALGLPSKLKASPYEQQNALFVSRRRSKKKNQSFSPVARLFGPAIFEASKLKVLF
LGVDEEKHPGKLPRTYTLTHSDITSKLTLAISQTINNSQLQGWYNRLQRDEVVAEWKKVK
GKMSLHVHCHISGGHFLLDICARLRFFIFSKELPVVLKAFVHGDGNLLNNHPELQEALVW
VYFHSNIPEFNKVECWGPLKEAVAGSSEAGGTRHEIRQETSISNWELPEPCQETCNCCFP
PMSLIPWSEKLPLQTENRGTQGQESLQQQTR

High Scoring Gene Products

Symbol, full name Information P value
NYE1
AT4G22920
protein from Arabidopsis thaliana 1.3e-91
AT4G11910 protein from Arabidopsis thaliana 1.4e-89
AT4G11911 protein from Arabidopsis thaliana 3.6e-82
AT1G44000 protein from Arabidopsis thaliana 6.2e-46

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  024155
        (271 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2127153 - symbol:NYE1 "AT4G22920" species:3702...   913  1.3e-91   1
TAIR|locus:2137020 - symbol:AT4G11910 "AT4G11910" species...   894  1.4e-89   1
TAIR|locus:4515103377 - symbol:AT4G11911 "AT4G11911" spec...   824  3.6e-82   1
TAIR|locus:2037154 - symbol:AT1G44000 "AT1G44000" species...   482  6.2e-46   1


>TAIR|locus:2127153 [details] [associations]
            symbol:NYE1 "AT4G22920" species:3702 "Arabidopsis
            thaliana" [GO:0015996 "chlorophyll catabolic process" evidence=IMP]
            [GO:0005515 "protein binding" evidence=IPI] GO:GO:0009536
            EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL031018 EMBL:AL161558
            GO:GO:0015996 GO:GO:0010304 eggNOG:NOG118556 HOGENOM:HOG000243267
            ProtClustDB:CLSN2689564 InterPro:IPR024438 Pfam:PF12638
            EMBL:AY063900 EMBL:AY096504 EMBL:AY850161 EMBL:DQ437531
            IPI:IPI00529577 PIR:T05123 RefSeq:NP_567673.1 UniGene:At.27150
            STRING:O82741 DNASU:828391 EnsemblPlants:AT4G22920.1 GeneID:828391
            KEGG:ath:AT4G22920 TAIR:At4g22920 InParanoid:O82741 OMA:YYIFRKE
            PhylomeDB:O82741 Genevestigator:O82741 Uniprot:O82741
        Length = 268

 Score = 913 (326.5 bits), Expect = 1.3e-91, P = 1.3e-91
 Identities = 189/270 (70%), Positives = 212/270 (78%)

Query:     1 MASLVAALGLPSKLKASPYEQQN------ALFVSRRRSKKKNQSFSPVARLFGPAIFEAS 54
             M SL A + LP+KLK +  ++++      +LF + RRSKKKNQS  PVARLFGPAIFE+S
Sbjct:     1 MCSLSAIMLLPTKLKPAYSDKRSNSSSSSSLFFNNRRSKKKNQSIVPVARLFGPAIFESS 60

Query:    55 KLKVLFLGVDEEKHPGKLPRTYTLTHSDITSKLTLAISQTINNSQLQGWYNRLQRDEVVA 114
             KLKVLFLGVDE+KHP  LPRTYTLTHSDIT+KLTLAISQ+INNSQLQGW NRL RDEVVA
Sbjct:    61 KLKVLFLGVDEKKHPSTLPRTYTLTHSDITAKLTLAISQSINNSQLQGWANRLYRDEVVA 120

Query:   115 EWKKVKGKMSLHVHCHISGGHFLLDICARLRFFIFSKELPVVLKAFVHGDGNLLNNHPEL 174
             EWKKVKGKMSLHVHCHISGGHFLLD+ A+ R+FIF KELPVVLKAFVHGDGNLLNN+PEL
Sbjct:   121 EWKKVKGKMSLHVHCHISGGHFLLDLFAKFRYFIFCKELPVVLKAFVHGDGNLLNNYPEL 180

Query:   175 QEALVWVYFHSNIPEFNKVECWGPLKEAVAGSSEAGGTRHEIRQETSISNWELPEP-CQE 233
             QEALVWVYFHSN+ EFNKVECWGPL EAV   S  G   H  + ET      LPE  C +
Sbjct:   181 QEALVWVYFHSNVNEFNKVECWGPLWEAV---SPDG---H--KTET------LPEARCAD 226

Query:   234 TCNCCFPPMSLIPWSEKLPLQTEN--RGTQ 261
              C+CCFP +S IPWS  L  +  N   GTQ
Sbjct:   227 ECSCCFPTVSSIPWSHSLSNEGVNGYSGTQ 256


>TAIR|locus:2137020 [details] [associations]
            symbol:AT4G11910 "AT4G11910" species:3702 "Arabidopsis
            thaliana" [GO:0008150 "biological_process" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM] GO:GO:0009536 EMBL:CP002687
            GenomeReviews:CT486007_GR GO:GO:0015996 GO:GO:0010304
            eggNOG:NOG118556 HOGENOM:HOG000243267 ProtClustDB:CLSN2689564
            InterPro:IPR024438 Pfam:PF12638 EMBL:AY699948 EMBL:DQ437532
            IPI:IPI00545148 RefSeq:NP_192928.2 UniGene:At.33525
            EnsemblPlants:AT4G11910.1 GeneID:826798 KEGG:ath:AT4G11910
            TAIR:At4g11910 InParanoid:Q66WT5 PhylomeDB:Q66WT5
            Genevestigator:Q66WT5 Uniprot:Q66WT5
        Length = 271

 Score = 894 (319.8 bits), Expect = 1.4e-89, P = 1.4e-89
 Identities = 177/253 (69%), Positives = 202/253 (79%)

Query:     1 MASLVAALGLPSKLK-ASPYE-QQNALFVSRRRSKKKNQSFSPVARLFGPAIFEASKLKV 58
             M SL   L LPSK+K   P +   ++L V+ RRSK KN+S  PVARLFGPAIFEASKLKV
Sbjct:     1 MCSLATNLLLPSKMKPVFPEKLSTSSLCVTTRRSKMKNRSIVPVARLFGPAIFEASKLKV 60

Query:    59 LFLGVDEEKHPGKLPRTYTLTHSDITSKLTLAISQTINNSQLQGWYNRLQRDEVVAEWKK 118
             LFLGVDE+KHP KLPRTYTLTHSDIT+KLTLAISQ+INNSQLQGW N+L RDEVV EWKK
Sbjct:    61 LFLGVDEKKHPAKLPRTYTLTHSDITAKLTLAISQSINNSQLQGWANKLFRDEVVGEWKK 120

Query:   119 VKGKMSLHVHCHISGGHFLLDICARLRFFIFSKELPVVLKAFVHGDGNLLNNHPELQEAL 178
             VKGKMSLHVHCHISGGHF L++ A+LR++IF KELPVVL+AF HGD  LLNNHPELQE+ 
Sbjct:   121 VKGKMSLHVHCHISGGHFFLNLIAKLRYYIFCKELPVVLEAFAHGDEYLLNNHPELQESP 180

Query:   179 VWVYFHSNIPEFNKVECWGPLKEAVAGSSEAGGTRHEIRQETSISNWELPE-PCQETCNC 237
             VWVYFHSNIPE+NKVECWGPL EA++     G T H+ + ET      LPE PC + C C
Sbjct:   181 VWVYFHSNIPEYNKVECWGPLWEAMSQHQHDGRT-HK-KSET------LPELPCPDECKC 232

Query:   238 CFPPMSLIPWSEK 250
             CFP +S IPWS +
Sbjct:   233 CFPTVSTIPWSHR 245


>TAIR|locus:4515103377 [details] [associations]
            symbol:AT4G11911 "AT4G11911" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] GO:GO:0009536 EMBL:CP002687
            GenomeReviews:CT486007_GR EMBL:AL161533 GO:GO:0015996 GO:GO:0010304
            IPI:IPI00891095 RefSeq:NP_001118967.1 UniGene:At.73507
            EnsemblPlants:AT4G11911.1 GeneID:6240548 KEGG:ath:AT4G11911
            TAIR:At4g11911 eggNOG:NOG118556 HOGENOM:HOG000243267 OMA:GTHESKQ
            PhylomeDB:B3H593 ProtClustDB:CLSN2689564 Genevestigator:B3H593
            InterPro:IPR024438 Pfam:PF12638 Uniprot:B3H593
        Length = 273

 Score = 824 (295.1 bits), Expect = 3.6e-82, P = 3.6e-82
 Identities = 166/251 (66%), Positives = 191/251 (76%)

Query:     1 MASLVAALGLPSKLKA--SPYEQQNALFVSRRRSKKKNQSFSPVARLFGPAIFEASKLKV 58
             M SL+A+L LP+ LK   S  E+ +++  + R SK+K QS  PVARLFG AIFEASKL V
Sbjct:     1 MCSLMASLLLPANLKPDFSDKERSSSIPSTTRSSKRKKQSMFPVARLFGQAIFEASKLNV 60

Query:    59 LFLGVDEEKHPGKLPRTYTLTHSDITSKLTLAISQTINNSQLQGWYNRLQRDEVVAEWKK 118
              FLGVDE+KHP  LPRTYT THSDIT+KLTLAIS +INNSQLQGW NRL RDEVVAEW+K
Sbjct:    61 KFLGVDEKKHPPNLPRTYTFTHSDITAKLTLAISHSINNSQLQGWANRLYRDEVVAEWRK 120

Query:   119 VKGKMSLHVHCHISGGHFLLDICARLRFFIFSKELPVVLKAFVHGDGNLLNNHPELQEAL 178
             VK  MSLHVHCHISG HFLLD+ A LR+FIF KELP+VLKAFVHGD N+LNN+PEL EA 
Sbjct:   121 VKSNMSLHVHCHISGDHFLLDLIAELRYFIFCKELPMVLKAFVHGDENMLNNYPELHEAF 180

Query:   179 VWVYFHSNIPEFNKVECWGPLKEAVAGSSEAGGTRHEIRQETSISNWELPEP-CQETCNC 237
             VWVYFHSNIP+FNKVECWG L EA         T H+  +  +     LPEP C + C+C
Sbjct:   181 VWVYFHSNIPKFNKVECWGRLCEA---------TSHDGCKTPTCEI--LPEPPCFDKCSC 229

Query:   238 CFPPMSLIPWS 248
             CFP +S IPWS
Sbjct:   230 CFPTVSTIPWS 240


>TAIR|locus:2037154 [details] [associations]
            symbol:AT1G44000 "AT1G44000" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0009658 "chloroplast
            organization" evidence=IMP] EMBL:CP002684 GO:GO:0009658
            InterPro:IPR024438 Pfam:PF12638 EMBL:AY045870 EMBL:AY091453
            IPI:IPI00544101 RefSeq:NP_564489.1 UniGene:At.19660 STRING:Q94AQ9
            PRIDE:Q94AQ9 EnsemblPlants:AT1G44000.1 GeneID:841000
            KEGG:ath:AT1G44000 TAIR:At1g44000 eggNOG:NOG136444
            InParanoid:Q94AQ9 OMA:WVYFHSS PhylomeDB:Q94AQ9
            ProtClustDB:CLSN2688450 ArrayExpress:Q94AQ9 Genevestigator:Q94AQ9
            Uniprot:Q94AQ9
        Length = 260

 Score = 482 (174.7 bits), Expect = 6.2e-46, P = 6.2e-46
 Identities = 95/177 (53%), Positives = 122/177 (68%)

Query:    36 NQSFSPVARLFGP-AIFEASKLKVLFLG-VDEEKHPGKL--PRTYTLTHSDITSKLTLAI 91
             N   S   RL  P A F++SKLKV FLG + E K  G +  PRTY L+H D T+ LTL I
Sbjct:    57 NTLVSEAVRLLVPQANFDSSKLKVEFLGELLENKSNGGIITPRTYILSHCDFTANLTLTI 116

Query:    92 SQTINNSQLQGWYNRLQRDEVVAEWKKVKGKMSLHVHCHISGGHFLLDICARLRFFIFSK 151
             S  IN  QL+GWY   ++D+VVAEWKKV  ++ LH+HC +SG   L D+ A LR+ IFSK
Sbjct:   117 SNVINLDQLEGWY---KKDDVVAEWKKVNDELRLHIHCCVSGMSLLQDVAAELRYHIFSK 173

Query:   152 ELPVVLKAFVHGDGNLLNNHPELQEALVWVYFHSNIPEFNKVECWGPLKEAVAGSSE 208
             ELP+VLKA VHGD  +   +PEL +A VWVYFHS+ P++N++ECWGPLK+A  G  +
Sbjct:   174 ELPLVLKAVVHGDSVMFRENPELMDAYVWVYFHSSTPKYNRIECWGPLKDAAKGKQQ 230


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.133   0.411    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      271       271   0.00098  114 3  11 22  0.49    33
                                                     32  0.40    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  618 (66 KB)
  Total size of DFA:  228 KB (2125 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  24.75u 0.18s 24.93t   Elapsed:  00:00:01
  Total cpu time:  24.75u 0.18s 24.93t   Elapsed:  00:00:01
  Start:  Thu May  9 15:09:28 2013   End:  Thu May  9 15:09:29 2013

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