BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024155
(271 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3EBI7|FB130_ARATH F-box protein At2g40910 OS=Arabidopsis thaliana GN=At2g40910 PE=2
SV=1
Length = 449
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 27/113 (23%)
Query: 111 EVVAEWKKVKGKMSLHVHCHISGGHFL------------LDICARLRFFIFSKELPVVLK 158
E W+KV+ S H H + G F+ +D CA + F I S+EL ++
Sbjct: 247 EAGGSWRKVRTLESYHPHAPSTVGQFINGSVVYYMAWLDMDTCAVVSFDITSEELTTIIV 306
Query: 159 AFVHGD---------GNLLNNHPELQEALVWVYFHSNIPEFNKVECWGPLKEA 202
GD L+ H E+ V+ H+++ E V+ W LK+A
Sbjct: 307 TLEAGDVALPAGRMKAGLIQYHGEIA-----VFDHTHLKEKFLVDLW-VLKDA 353
>sp|P57265|FOLC_BUCAI Bifunctional protein FolC OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=folC PE=3 SV=1
Length = 411
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 180 WVYFHSNIPEFNKVECWGPLKEAVAGSSEAGGTRHEIRQET---SISNWELPEPCQ 232
W +FHS I +N E PL A S +R +I+++ SISN +LP Q
Sbjct: 230 WNFFHSTIQLYNLPETQVPLSSAATALSTLYYSRFKIKEKIIRKSISNVQLPGRFQ 285
>sp|Q5SXM2|SNPC4_HUMAN snRNA-activating protein complex subunit 4 OS=Homo sapiens GN=SNAPC4
PE=1 SV=1
Length = 1469
Score = 32.7 bits (73), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 9/71 (12%)
Query: 207 SEAGGTRHEIRQETSISNWELPEPCQETCNCCFPPMSLIPWSEKLPL------QTENRGT 260
+EA G+ + E ++ E+PEP T + PP + PWS +LP TE RGT
Sbjct: 1165 AEADGSVAFVPGEAQVAR-EIPEP--RTSSHADPPEAEPPWSGRLPAFGGVIPATEPRGT 1221
Query: 261 QGQESLQQQTR 271
G S Q+ R
Sbjct: 1222 PGSPSGTQEPR 1232
>sp|Q6GLK6|ACSF3_XENLA Acyl-CoA synthetase family member 3, mitochondrial OS=Xenopus
laevis GN=acsf3 PE=2 SV=1
Length = 578
Score = 32.0 bits (71), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 83/216 (38%), Gaps = 30/216 (13%)
Query: 11 PSKLKASPYEQQNALFVSRRRSKKKNQSFSPVARLFGPAIFEASKLKVLFLGVDEEKHPG 70
PS+LK + Q+AL V+ + SP+A G + VL + + HP
Sbjct: 132 PSELKYVLQDSQSALVVAE---ESYTNVLSPLAEQLG--------IPVLTMSGSQNLHPS 180
Query: 71 KLPRTYTLTHSDITSK----LTLAISQTINNSQ--LQGWYNRLQR-DEVVAEWKKVKGKM 123
+L + ++ D+ K + + S T + L YN +V EW K
Sbjct: 181 ELLQEIKISQLDLDWKDRGAMIIYTSGTTGRPKGVLSTHYNLYSMVTALVNEWGWTKEDS 240
Query: 124 SLHV----HCHISGGHFLLDICARLRFFIFSKELP-VVLKAFVHGDG---NLLNNHPELQ 175
LHV H H + + I + P V + F+ D N+ P +
Sbjct: 241 ILHVLPLHHVHGVVNKLMCPLWVGATCVILPEFCPKTVWQHFLGRDVPSINIFMAVPTIY 300
Query: 176 EALVWVY----FHSNIPEFNKVECWGPLKEAVAGSS 207
L+ Y HSN+ EF + C ++ V+GSS
Sbjct: 301 SKLIAYYEQHFTHSNVREFVRAACQERIRLMVSGSS 336
>sp|Q11U88|MEND_CYTH3 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Cytophaga hutchinsonii (strain ATCC 33406 /
NCIMB 9469) GN=menD PE=3 SV=1
Length = 559
Score = 31.6 bits (70), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 68/164 (41%), Gaps = 21/164 (12%)
Query: 115 EWKKVKGKMSLHVHCHISGGHFLLDICARLRFFIFSKELPVV--LKAFVHGDGNLLNNHP 172
+WK ++ K+ + GG L D RL+ I + + P + + + +HG N+++ H
Sbjct: 199 QWKSIQHKLDSYKKILFVGGQHLYDESLRLK--IGNIKAPFIGEVVSNLHGVRNVIHTHD 256
Query: 173 ELQEALVWVYFHSNIPEFNKVECWGPLKEAVAGSSEAGGTRHEIRQETSISNWEL----- 227
L ++IP + E L + G+ + + IR SI +W +
Sbjct: 257 TLL---------TSIPLTDLEELKPDLVISFGGALLSKWLKQFIRSNESIDHWYVGPDVT 307
Query: 228 -PEPCQETCNCCFPPMSLIPWSEKLPLQTENRGTQGQESLQQQT 270
P+ Q C P+ L + K + + + Q +QQQT
Sbjct: 308 TPDVFQHLCQII--PVQLNEFLSKTTIASNTQEQFVQRWIQQQT 349
>sp|B1HR98|LEU1_LYSSC 2-isopropylmalate synthase OS=Lysinibacillus sphaericus (strain
C3-41) GN=leuA PE=3 SV=1
Length = 511
Score = 31.2 bits (69), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 10/80 (12%)
Query: 53 ASKLKVLFLGVDEEKHPGKLPRTYTLTHSDITSKLTLAISQTINNSQLQGWYNRLQRDEV 112
A +L+ L + + E P P + H I++T+ NS + G +Q+D +
Sbjct: 31 AKQLERLGVTIIEAGFPASSPGDFDAVHR---------IAETVKNSVVTGLARCIQKD-I 80
Query: 113 VAEWKKVKGKMSLHVHCHIS 132
W+ +KG H+H ++
Sbjct: 81 DTTWEAIKGAQQPHIHIFLA 100
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,527,807
Number of Sequences: 539616
Number of extensions: 4222377
Number of successful extensions: 8238
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 8236
Number of HSP's gapped (non-prelim): 9
length of query: 271
length of database: 191,569,459
effective HSP length: 116
effective length of query: 155
effective length of database: 128,974,003
effective search space: 19990970465
effective search space used: 19990970465
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)