Query 024155
Match_columns 271
No_of_seqs 82 out of 84
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 03:20:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024155.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024155hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3w1s_C Ubiquitin-like protein 47.6 7.8 0.00027 29.9 1.7 47 49-97 2-61 (91)
2 2d7p_A Filamin-C; beta-sandwic 27.7 1.8E+02 0.0061 22.2 6.6 76 47-129 5-85 (112)
3 4gdk_A Ubiquitin-like protein 20.5 57 0.0019 24.9 2.4 61 54-125 4-82 (91)
4 2xzm_4 40S ribosomal protein S 18.3 5.5E+02 0.019 23.4 8.7 86 42-131 28-144 (265)
5 2e5q_A PHD finger protein 19; 17.2 55 0.0019 24.3 1.6 22 109-132 11-32 (63)
6 2eqj_A Metal-response element- 15.7 1.3E+02 0.0044 22.4 3.3 24 108-133 16-39 (66)
7 2e5p_A Protein PHF1, PHD finge 15.6 99 0.0034 23.2 2.7 23 109-133 13-35 (68)
8 3qii_A PHD finger protein 20; 15.5 57 0.0019 25.2 1.4 16 107-124 23-38 (85)
9 3p8d_A Medulloblastoma antigen 13.7 70 0.0024 23.5 1.4 14 108-123 9-22 (67)
10 1ro5_A Autoinducer synthesis p 13.2 71 0.0024 26.1 1.4 21 138-158 19-39 (201)
No 1
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=47.56 E-value=7.8 Score=29.93 Aligned_cols=47 Identities=13% Similarity=0.162 Sum_probs=27.3
Q ss_pred CCCCCCcceEEEeccCCcCCCCCCCcceeeccCCcCC-------------ceEEEEccccch
Q 024155 49 AIFEASKLKVLFLGVDEEKHPGKLPRTYTLTHSDITS-------------KLTLAISQTINN 97 (271)
Q Consensus 49 ~~Fnp~KLsV~f~gvt~~~~P~~ipRrYTLTHSD~T~-------------~LfLtIg~~fn~ 97 (271)
+.++++|+.|.|.++. .-|....++|.+.-++--+ .|||-|.+.|..
T Consensus 2 ~~~~~~Kv~vrfk~~g--~~P~l~k~KflV~~~~t~~~~v~~lRkrL~l~alFlyVNn~f~P 61 (91)
T 3w1s_C 2 AHMNIQKIQIKFQPIG--SIGQLKPSVCKISMSQSFAMVILFLKRRLKMDHVYCYINNSFAP 61 (91)
T ss_dssp ----CCEEEEEEEECC--C-------EEEEETTSBHHHHHHHHHHHHTCSCCEEEETTTBCC
T ss_pred CCCCCCeEEEEEEecC--CCCcccccEEEcCCCCCHHHHHHHHHHhhCCceEEEEECCccCC
Confidence 4689999999999875 3466577888887665443 378888877643
No 2
>2d7p_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10 PDB: 2eeb_A
Probab=27.67 E-value=1.8e+02 Score=22.23 Aligned_cols=76 Identities=11% Similarity=0.143 Sum_probs=45.9
Q ss_pred CCCCCCCCcceEEEeccCCcCCCCCCCcceeeccCCcCCceEEEEccccc---hhhhhhhccccccc-eeeeeEe-eeCC
Q 024155 47 GPAIFEASKLKVLFLGVDEEKHPGKLPRTYTLTHSDITSKLTLAISQTIN---NSQLQGWYNRLQRD-EVVAEWK-KVKG 121 (271)
Q Consensus 47 gp~~Fnp~KLsV~f~gvt~~~~P~~ipRrYTLTHSD~T~~LfLtIg~~fn---~dqL~gwynrl~RD-EVlAEWk-~~~g 121 (271)
-+...||+|+.|. |.....-.+..+=.+||+-.|.-++|...|-.--. .-+++ ...| -...++. +..|
T Consensus 5 ~~~~~Daskv~~~--g~~~~~~~vg~~~~F~V~~~~a~g~l~v~V~~P~g~~~~~~v~-----d~~~gty~v~ytP~~~G 77 (112)
T 2d7p_A 5 SSGSDDARRLTVT--SLQETGLKVNQPASFAVQLNGARGVIDARVHTPSGAVEECYVS-----ELDSDKHTIRFIPHENG 77 (112)
T ss_dssp CCCSCGGGGCEEC--SSCSBCCCTTCCEEEEEECTTCCSCEEEEEECSSSCBCCCEEC-----SCBTTEEEEEECCSSCE
T ss_pred ccCCCCcceeEEe--CCCcCCcccCCcEEEEEEeCCCCCCEEEEEECCCCCeeeeEEE-----eCCCCeEEEEEEcCCCE
Confidence 4578999999886 43322223346668999999999999988833111 11222 2223 3455665 4456
Q ss_pred eeEEEEEE
Q 024155 122 KMSLHVHC 129 (271)
Q Consensus 122 ~~~LhVyc 129 (271)
.|.++|.+
T Consensus 78 ~h~v~V~~ 85 (112)
T 2d7p_A 78 VHSIDVKF 85 (112)
T ss_dssp EEEEEEEE
T ss_pred eEEEEEEE
Confidence 77776654
No 3
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=20.53 E-value=57 Score=24.90 Aligned_cols=61 Identities=16% Similarity=0.305 Sum_probs=39.2
Q ss_pred CcceEEEeccCCcCCCCCCCcceeeccCC----------------cCCceEEEEccccch--hhhhhhccccccceeeee
Q 024155 54 SKLKVLFLGVDEEKHPGKLPRTYTLTHSD----------------ITSKLTLAISQTINN--SQLQGWYNRLQRDEVVAE 115 (271)
Q Consensus 54 ~KLsV~f~gvt~~~~P~~ipRrYTLTHSD----------------~T~~LfLtIg~~fn~--dqL~gwynrl~RDEVlAE 115 (271)
.|+.|.|.++. .-|....++|.+.-++ -+..|||-|++.|.. |+.- .++..+
T Consensus 4 ~Kv~v~fk~~g--~~P~l~k~KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyVnn~~~P~~d~~~--------~~Ly~~ 73 (91)
T 4gdk_A 4 KKIDILLKAVG--DTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEV--------GTLYEC 73 (91)
T ss_dssp CEEEEEEEECS--SSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEETTTBCCCTTCBH--------HHHHHH
T ss_pred ceEEEEEEecC--CCCcccccEEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEECCccCCChhhHH--------HHHHHH
Confidence 57888888875 3466578888876543 345699999888743 3332 445555
Q ss_pred EeeeCCeeEE
Q 024155 116 WKKVKGKMSL 125 (271)
Q Consensus 116 Wk~~~g~~~L 125 (271)
.+ .+|..++
T Consensus 74 ~k-~DGfLyv 82 (91)
T 4gdk_A 74 FG-SDGKLVL 82 (91)
T ss_dssp HC-BTTEEEE
T ss_pred hC-CCCEEEE
Confidence 55 5676444
No 4
>2xzm_4 40S ribosomal protein S3A; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_4
Probab=18.29 E-value=5.5e+02 Score=23.42 Aligned_cols=86 Identities=14% Similarity=0.148 Sum_probs=53.2
Q ss_pred hhhhhC---CCCCCCCcceEEEeccCCcC--CCC-CCCcceeeccCCcCCc---------------------eEEEEccc
Q 024155 42 VARLFG---PAIFEASKLKVLFLGVDEEK--HPG-KLPRTYTLTHSDITSK---------------------LTLAISQT 94 (271)
Q Consensus 42 ~arl~g---p~~Fnp~KLsV~f~gvt~~~--~P~-~ipRrYTLTHSD~T~~---------------------LfLtIg~~ 94 (271)
.-.|++ |+.|+-..+=-+...-|+.+ .|- -.+|.|-+|..|.|++ ||-=.|.+
T Consensus 28 ~K~WY~VkAP~~F~~r~iGkTlv~rt~gtkia~d~L~GRv~EvsLaDL~~d~~~~~~rK~kf~i~~V~G~nalT~F~Gmd 107 (265)
T 2xzm_4 28 RKEWYDFRAPIPFSSKSFGKTLVTKSSGNRIASEEIKGRVVESTLADLKDNSNDKAWRKVKLVIDEVDGRNAKTSFYGLD 107 (265)
T ss_dssp SEEEEEEECCTTSCSSCCSEEEEECCCSSSCSTTSGGGCEEEEESCSSSSTTTTSCCCEEEEEEEEECSSCEEEEEEEEE
T ss_pred ccceEEEECCcccCCceeEEEecccccCcccCchhcCCcEEEEEHHHhcCChhhhcceEEEEEEEeecCCEEEEEEeeee
Confidence 344544 78898777766666321111 121 3899999999999988 33445677
Q ss_pred cchhhhhh----hccccccceeeeeEeeeCCeeEEEEEEEe
Q 024155 95 INNSQLQG----WYNRLQRDEVVAEWKKVKGKMSLHVHCHI 131 (271)
Q Consensus 95 fn~dqL~g----wynrl~RDEVlAEWk~~~g~~~LhVyc~V 131 (271)
+..|.|.. |-++ =|....=+ +...|.|.|+|-.
T Consensus 108 lTrDklrSlVrKw~s~---Iea~vdVk-T~DGY~lRvf~i~ 144 (265)
T 2xzm_4 108 ITRDRLCSMIRKWQTL---IEARVDCK-TNDGYIIRVFTLA 144 (265)
T ss_dssp CCHHHHHHSCCTTBCE---EEEEEEEE-ETTTEEEEEEEEE
T ss_pred ccHHHhhhhhccccee---EEEEEEEE-eCCCcEEEEEEEE
Confidence 78887764 4332 33333333 3567888888863
No 5
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=17.22 E-value=55 Score=24.31 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=15.7
Q ss_pred cceeeeeEeeeCCeeEEEEEEEee
Q 024155 109 RDEVVAEWKKVKGKMSLHVHCHIS 132 (271)
Q Consensus 109 RDEVlAEWk~~~g~~~LhVyc~Vs 132 (271)
=++|||+|. +|.|+|---+-|+
T Consensus 11 GqdVLarWs--DGlfYlgtV~kV~ 32 (63)
T 2e5q_A 11 GQYVLCRWT--DGLYYLGKIKRVS 32 (63)
T ss_dssp TCEEEEECT--TSCEEEEEECCCC
T ss_pred CCEEEEEec--CCCEEEEEEEEEe
Confidence 489999996 5778885444444
No 6
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=15.72 E-value=1.3e+02 Score=22.38 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=18.9
Q ss_pred ccceeeeeEeeeCCeeEEEEEEEeeC
Q 024155 108 QRDEVVAEWKKVKGKMSLHVHCHISG 133 (271)
Q Consensus 108 ~RDEVlAEWk~~~g~~~LhVyc~VsG 133 (271)
.-|+|||.| .+|.+++=--+-|+.
T Consensus 16 vGddVLA~w--tDGl~Y~gtI~~V~~ 39 (66)
T 2eqj_A 16 EGQDVLARW--SDGLFYLGTIKKINI 39 (66)
T ss_dssp TTCEEEEEC--TTSCEEEEEEEEEET
T ss_pred CCCEEEEEE--ccCcEEEeEEEEEcc
Confidence 459999999 789999966666654
No 7
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=15.65 E-value=99 Score=23.25 Aligned_cols=23 Identities=22% Similarity=0.479 Sum_probs=17.7
Q ss_pred cceeeeeEeeeCCeeEEEEEEEeeC
Q 024155 109 RDEVVAEWKKVKGKMSLHVHCHISG 133 (271)
Q Consensus 109 RDEVlAEWk~~~g~~~LhVyc~VsG 133 (271)
=++|||+|.+ |.|+|=--+-|+.
T Consensus 13 GqdVLarWsD--GlfYlGtV~kV~~ 35 (68)
T 2e5p_A 13 GQDVLARWTD--GLLYLGTIKKVDS 35 (68)
T ss_dssp TCEEEEECTT--SSEEEEEEEEEET
T ss_pred CCEEEEEecC--CcEEEeEEEEEec
Confidence 4899999964 8899966666654
No 8
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=15.46 E-value=57 Score=25.22 Aligned_cols=16 Identities=19% Similarity=0.416 Sum_probs=11.2
Q ss_pred cccceeeeeEeeeCCeeE
Q 024155 107 LQRDEVVAEWKKVKGKMS 124 (271)
Q Consensus 107 l~RDEVlAEWk~~~g~~~ 124 (271)
.--|+|+|.| .+++|+
T Consensus 23 ~vGd~VlArW--~D~~yY 38 (85)
T 3qii_A 23 QINEQVLACW--SDCRFY 38 (85)
T ss_dssp CTTCEEEEEC--TTSCEE
T ss_pred ccCCEEEEEe--CCCCEe
Confidence 3459999999 555443
No 9
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=13.67 E-value=70 Score=23.54 Aligned_cols=14 Identities=21% Similarity=0.558 Sum_probs=10.1
Q ss_pred ccceeeeeEeeeCCee
Q 024155 108 QRDEVVAEWKKVKGKM 123 (271)
Q Consensus 108 ~RDEVlAEWk~~~g~~ 123 (271)
.-|+|+|.| .++.|
T Consensus 9 vGd~vmArW--~D~~y 22 (67)
T 3p8d_A 9 INEQVLACW--SDCRF 22 (67)
T ss_dssp TTCEEEEEC--TTSCE
T ss_pred cCCEEEEEc--CCCCE
Confidence 459999999 44443
No 10
>1ro5_A Autoinducer synthesis protein LASI; alpha-beta-alpha sandwich, phosphopantetheine fold, signalin; 2.30A {Pseudomonas aeruginosa} SCOP: d.108.1.3
Probab=13.23 E-value=71 Score=26.13 Aligned_cols=21 Identities=19% Similarity=0.172 Sum_probs=16.3
Q ss_pred hhHHhhHHHHHHhhhhhhhhh
Q 024155 138 LDICARLRFFIFSKELPVVLK 158 (271)
Q Consensus 138 ~~~~A~lRy~IFrKELPLvLk 158 (271)
.+.+.++||.||..|+...+.
T Consensus 19 ~~~~~~LR~~VFv~E~g~~~~ 39 (201)
T 1ro5_A 19 LGEMHKLRAQVFKERKGWDVS 39 (201)
T ss_dssp HHHHHHHHHHHHTTCSSSCCC
T ss_pred HHHHHHHHHHHHHHhcCCCCC
Confidence 345667999999999987543
Done!