Query 024157
Match_columns 271
No_of_seqs 167 out of 1149
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 03:22:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024157.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024157hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jg6_A DNA-3-methyladenine gly 100.0 9.4E-55 3.2E-59 380.0 12.3 110 159-270 1-110 (186)
2 2ofk_A 3-methyladenine DNA gly 100.0 1.1E-54 3.7E-59 378.7 12.6 110 159-270 1-110 (183)
3 2h56_A DNA-3-methyladenine gly 95.8 0.029 9.8E-07 49.2 8.0 90 169-264 29-120 (233)
4 1orn_A Endonuclease III; DNA r 95.5 0.1 3.5E-06 45.5 10.6 70 191-264 33-102 (226)
5 3n0u_A Probable N-glycosylase/ 95.5 0.015 5E-07 51.2 5.0 67 187-262 46-113 (219)
6 2yg9_A DNA-3-methyladenine gly 95.4 0.039 1.3E-06 48.2 7.5 90 169-264 38-128 (225)
7 1kea_A Possible G-T mismatches 94.5 0.16 5.6E-06 43.9 8.9 70 191-264 35-104 (221)
8 2abk_A Endonuclease III; DNA-r 94.4 0.092 3.1E-06 45.0 6.9 71 190-264 28-98 (211)
9 1kg2_A A/G-specific adenine gl 93.9 0.23 7.9E-06 42.9 8.5 69 191-264 30-98 (225)
10 4b21_A Probable DNA-3-methylad 93.6 0.31 1E-05 42.9 8.9 90 169-264 36-131 (232)
11 3s6i_A DNA-3-methyladenine gly 93.3 0.31 1E-05 42.6 8.4 88 169-263 25-119 (228)
12 3n5n_X A/G-specific adenine DN 92.5 0.53 1.8E-05 43.0 9.0 72 188-264 46-117 (287)
13 3i0w_A 8-oxoguanine-DNA-glycos 92.2 0.87 3E-05 41.0 10.0 87 169-263 94-192 (290)
14 1pu6_A 3-methyladenine DNA gly 91.9 0.62 2.1E-05 40.3 8.4 71 191-263 30-105 (218)
15 4e9f_A Methyl-CPG-binding doma 90.6 1.1 3.8E-05 37.5 8.3 67 192-262 32-98 (161)
16 3fsp_A A/G-specific adenine gl 90.3 1.2 4.1E-05 40.9 9.1 72 188-264 36-107 (369)
17 3fhg_A Mjogg, N-glycosylase/DN 89.8 0.8 2.7E-05 39.2 7.0 69 187-263 29-97 (207)
18 2jhn_A ALKA, 3-methyladenine D 88.4 0.99 3.4E-05 40.6 6.9 87 169-261 94-194 (295)
19 1mpg_A ALKA, 3-methyladenine D 87.6 2.6 9E-05 37.4 9.1 78 181-264 103-191 (282)
20 2d3d_A VTS1 protein; RNA bindi 85.8 1.4 4.9E-05 34.3 5.5 47 214-262 31-77 (88)
21 2b6g_A VTS1P; alpha-helix, pen 84.3 2.4 8.1E-05 34.7 6.4 54 206-262 55-108 (119)
22 1v38_A SAM-domain protein sams 81.3 1.7 5.8E-05 32.1 4.1 43 214-258 25-70 (78)
23 2es6_A VTS1P; SAM domain, prot 81.0 2.4 8.3E-05 33.9 5.1 47 214-262 44-90 (101)
24 1ucv_A Ephrin type-A receptor 80.1 2.9 9.9E-05 30.8 5.1 46 214-261 20-68 (81)
25 2xhi_A N-glycosylase/DNA lyase 78.1 7 0.00024 36.4 8.1 87 170-264 132-232 (360)
26 3k1r_B Usher syndrome type-1G 76.7 5.4 0.00018 29.3 5.6 44 214-262 19-62 (74)
27 3fhf_A Mjogg, N-glycosylase/DN 76.1 3.1 0.00011 36.3 4.9 67 186-260 39-105 (214)
28 1b0x_A Protein (EPHA4 receptor 74.7 4.8 0.00016 30.5 5.0 46 214-261 39-87 (94)
29 1b4f_A EPHB2; SAM domain, EPH 74.6 7.2 0.00025 28.5 5.9 47 214-262 24-73 (82)
30 2eao_A Ephrin type-B receptor 73.6 5.3 0.00018 30.5 5.1 45 214-260 35-82 (99)
31 2kso_A Ephrin type-A receptor 72.1 6.5 0.00022 29.2 5.1 45 214-260 29-76 (82)
32 2dl0_A SAM and SH3 domain-cont 72.1 2.3 8E-05 32.9 2.7 43 214-258 36-81 (97)
33 2k4p_A Phosphatidylinositol-3, 69.9 6 0.0002 30.0 4.5 42 214-257 39-83 (86)
34 1x40_A ARAP2; ASAP-related pro 69.6 4.3 0.00015 30.7 3.7 45 214-260 28-75 (91)
35 3h8m_A Ephrin type-A receptor 69.1 7.7 0.00026 29.5 5.1 45 214-260 38-85 (90)
36 2e8n_A Ephrin type-A receptor 65.9 5.3 0.00018 29.8 3.5 46 214-261 25-73 (88)
37 3kka_C Ephrin type-A receptor 64.3 9 0.00031 28.9 4.5 43 214-258 34-79 (86)
38 3hil_A Ephrin type-A receptor 62.0 6.3 0.00021 29.5 3.2 42 214-257 36-80 (82)
39 2kg5_A ARF-GAP, RHO-GAP domain 61.7 9 0.00031 29.7 4.2 43 214-258 39-84 (100)
40 1oxj_A RNA-binding protein sma 60.9 10 0.00035 32.9 4.8 44 214-260 20-63 (173)
41 2ean_A Connector enhancer of k 57.4 22 0.00076 25.8 5.5 39 221-261 37-75 (83)
42 3sei_A Caskin-1; SAM domain, p 52.2 25 0.00086 28.7 5.6 47 214-262 92-141 (149)
43 3sei_A Caskin-1; SAM domain, p 51.7 16 0.00056 29.8 4.4 43 214-258 23-67 (149)
44 3bs5_B Connector enhancer of k 51.4 30 0.001 24.8 5.3 44 216-261 26-71 (80)
45 2khq_A Integrase; all-alpha, s 47.2 69 0.0024 22.3 7.9 42 201-242 17-58 (110)
46 2lv7_A Calcium-binding protein 46.7 8.2 0.00028 28.7 1.7 44 214-257 36-79 (100)
47 2oxo_A Integrase; DNA-binding 46.2 63 0.0022 21.5 8.1 41 201-241 16-56 (103)
48 2qkq_A Ephrin type-B receptor 45.7 20 0.0007 26.2 3.7 45 214-260 28-75 (83)
49 2lmr_A ODIN, ankyrin repeat an 45.3 12 0.00042 29.1 2.6 43 214-258 42-89 (101)
50 2gle_A Neurabin-1; SAM domain, 43.6 49 0.0017 23.2 5.4 45 214-260 22-68 (74)
51 1z19_A Integrase; protein-DNA 42.7 1.2E+02 0.004 24.4 8.2 43 200-242 15-57 (283)
52 1k94_A Grancalcin; penta-EF-ha 40.9 21 0.00071 27.0 3.2 49 209-257 65-113 (165)
53 2b1u_A Calmodulin-like protein 39.8 15 0.00053 23.7 2.0 44 213-256 5-48 (71)
54 1eh2_A EPS15; calcium binding, 38.8 13 0.00044 28.3 1.7 40 202-242 3-42 (106)
55 2ktg_A Calmodulin, putative; e 37.9 16 0.00055 24.7 2.0 45 213-257 13-57 (85)
56 2kz2_A Calmodulin, CAM; TR2C, 37.1 14 0.0005 26.4 1.7 44 214-257 29-72 (94)
57 1kdx_B CREB; complex (transcri 36.6 5 0.00017 25.5 -0.8 18 207-224 7-24 (28)
58 2f3n_A SH3 and multiple ankyri 35.3 33 0.0011 24.6 3.4 45 215-261 21-67 (76)
59 1wlz_A DJBP, CAP-binding prote 34.9 20 0.00067 25.4 2.1 45 211-255 21-65 (105)
60 1juo_A Sorcin; calcium-binding 34.9 30 0.001 27.2 3.4 48 209-256 98-145 (198)
61 1j7q_A CAVP, calcium vector pr 33.7 19 0.00065 24.5 1.8 39 213-251 13-51 (86)
62 1a0p_A Site-specific recombina 33.3 1.1E+02 0.0039 24.6 6.7 56 187-242 1-59 (290)
63 2jjz_A Ionized calcium-binding 32.0 34 0.0012 26.3 3.2 49 210-258 46-94 (150)
64 2kiv_A Ankyrin repeat and ster 31.7 30 0.001 27.9 2.9 43 214-258 27-74 (148)
65 2aao_A CDPK, calcium-dependent 31.5 54 0.0019 24.3 4.2 61 192-256 9-69 (166)
66 1tiz_A Calmodulin-related prot 31.4 14 0.00048 23.5 0.7 42 216-257 3-44 (67)
67 1fi6_A EH domain protein REPS1 30.8 11 0.00036 27.1 0.0 31 211-241 6-36 (92)
68 2joj_A Centrin protein; N-term 30.2 14 0.00049 24.3 0.6 44 213-256 6-49 (77)
69 2d58_A Allograft inflammatory 30.2 30 0.001 24.9 2.4 47 211-257 29-75 (107)
70 2jq6_A EH domain-containing pr 29.4 13 0.00045 30.2 0.4 36 204-241 42-77 (139)
71 3bq7_A Diacylglycerol kinase d 29.2 59 0.002 23.5 3.9 44 216-261 27-72 (81)
72 2pvb_A Protein (parvalbumin); 28.9 39 0.0013 23.8 2.8 45 213-257 40-87 (108)
73 2ke7_A Ankyrin repeat and ster 28.6 65 0.0022 24.6 4.2 47 214-262 35-86 (103)
74 1k2h_A S100A1, S-100 protein, 28.1 25 0.00087 24.2 1.7 32 211-242 6-39 (93)
75 2znd_A Programmed cell death p 27.7 36 0.0012 25.8 2.6 48 209-256 69-116 (172)
76 3bs7_A Protein aveugle; sterIl 27.1 1.5E+02 0.0052 20.8 5.7 45 215-261 24-70 (78)
77 2kn2_A Calmodulin; S MAPK phos 27.0 28 0.00097 23.9 1.7 42 214-255 9-50 (92)
78 3lys_A Prophage PI2 protein 01 27.0 1.7E+02 0.0058 20.7 7.5 68 203-270 23-90 (112)
79 2i7a_A Calpain 13; calcium-dep 26.9 23 0.00078 28.5 1.4 48 209-257 71-122 (174)
80 1gjy_A Sorcin, CP-22, V19; cal 26.7 35 0.0012 25.9 2.3 54 204-257 59-115 (167)
81 1avs_A Troponin C; muscle cont 26.6 29 0.001 23.9 1.7 44 213-256 19-62 (90)
82 2mys_C Myosin; muscle protein, 26.5 49 0.0017 23.8 3.0 44 213-256 84-127 (149)
83 1c07_A Protein (epidermal grow 25.7 11 0.00037 27.3 -0.7 31 212-242 8-38 (95)
84 1y1x_A Leishmania major homolo 25.7 49 0.0017 25.9 3.1 47 209-255 88-134 (191)
85 2kgr_A Intersectin-1; structur 25.6 15 0.00052 27.6 0.1 31 211-241 11-41 (111)
86 2qac_A Myosin A tail domain in 24.6 58 0.002 23.8 3.2 46 213-258 83-128 (146)
87 1z1b_A Integrase; protein-DNA 24.5 3E+02 0.01 23.1 8.1 41 201-241 89-129 (356)
88 2k9i_A Plasmid PRN1, complete 23.8 1.5E+02 0.0051 19.0 5.2 31 188-220 17-47 (55)
89 1wdc_C Scallop myosin; calcium 23.8 47 0.0016 24.5 2.6 45 213-257 83-127 (156)
90 3rm1_A Protein S100-B; alpha-h 23.7 37 0.0013 24.2 1.9 32 210-242 5-39 (92)
91 2kiw_A INT protein; alpha, str 23.2 1.9E+02 0.0065 20.0 7.9 71 200-270 13-83 (111)
92 2l8n_A Transcriptional repress 22.9 99 0.0034 21.8 4.0 40 224-271 14-53 (67)
93 2ovk_B RLC, myosin regulatory 22.6 57 0.002 24.0 2.8 45 214-258 16-60 (153)
94 3h4s_E KCBP interacting Ca2+-b 22.4 56 0.0019 24.5 2.8 45 213-257 39-84 (135)
95 1c7v_A CAVP, calcium vector pr 22.0 49 0.0017 22.0 2.1 43 213-256 8-51 (81)
96 1pva_A Parvalbumin; calcium bi 21.6 48 0.0017 23.3 2.1 46 212-257 40-88 (110)
97 4h62_V Mediator of RNA polymer 21.6 30 0.001 22.0 0.9 15 228-242 6-20 (31)
98 1uxc_A FRUR (1-57), fructose r 21.5 80 0.0027 22.2 3.2 40 224-271 5-47 (65)
99 1wy9_A Allograft inflammatory 21.5 51 0.0018 25.3 2.4 47 211-257 45-91 (147)
100 1qjt_A EH1, epidermal growth f 21.3 25 0.00084 25.9 0.5 32 212-243 9-40 (99)
101 1lhs_A Myoglobin; oxygen stora 21.2 56 0.0019 25.8 2.7 55 205-260 13-76 (153)
102 1k9u_A Polcalcin PHL P 7; poll 21.1 25 0.00087 23.3 0.5 27 215-241 4-30 (78)
103 2qac_A Myosin A tail domain in 20.8 31 0.0011 25.3 1.0 31 211-241 11-42 (146)
104 3i5g_B Myosin regulatory light 20.4 57 0.002 25.3 2.5 44 213-256 84-127 (153)
105 2opo_A Polcalcin CHE A 3; calc 20.2 38 0.0013 22.9 1.2 43 213-256 10-52 (86)
106 1ggw_A Protein (CDC4P); light 20.1 61 0.0021 23.4 2.5 44 214-257 76-119 (140)
107 2eam_A Putative 47 kDa protein 20.1 26 0.00089 25.4 0.4 43 214-258 25-72 (80)
No 1
>2jg6_A DNA-3-methyladenine glycosidase; 3-methyladenine-DNA-glycosylase-I, hydrolase; 1.70A {Staphylococcus aureus} PDB: 4aia_A* 4ai5_A* 4ai4_A
Probab=100.00 E-value=9.4e-55 Score=380.04 Aligned_cols=110 Identities=31% Similarity=0.595 Sum_probs=108.1
Q ss_pred CCCCCCCCCCCChhhhhhhhcCCCccccChHHHHHHHHHHHHhccCCHHHHHHhHHHHHHHHhCCCHHHHhcCCHHHHHH
Q 024157 159 KKRCAWVTPNTDPCYAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLA 238 (271)
Q Consensus 159 ~~RC~Wa~~~~dply~~YHD~EWGvPvhDDr~LFElL~LEgfQAGLSW~tILkKRe~fReAF~~FDp~~VA~~~E~~Ie~ 238 (271)
|+||.|++ +||+|++|||+|||+|+|||++|||+||||||||||||.|||+||++||+||+||||++||.|+|++|++
T Consensus 1 m~RC~W~~--~~ply~~YHD~EWG~Pv~Dd~~LFE~L~LEgfQAGLSW~tIL~KRe~fR~AF~~FD~~~VA~~~e~dve~ 78 (186)
T 2jg6_A 1 MNECAFGT--KDPVYLNYHDHVWGQPLYDSKALFKLLALESQHAGLSWLTILKKKEAYEEAFYDFEPEKVAQMTAQDIDR 78 (186)
T ss_dssp CTTTTTTC--CCHHHHHHHHHTTTSCCCCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTGGGCHHHHTTCCHHHHHH
T ss_pred CCCCCCCC--CChHHHHHHHhccCCcccCcHHHHHHHHHHHHhccCCHHHHHHhHHHHHHHHcCCCHHHHhCCCHHHHHH
Confidence 47999996 7999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccchhhcchhHHHHHHHHHHHHHHHHHhcC
Q 024157 239 AGSAASSLLSELKLRAIIENARQISKVDFYFH 270 (271)
Q Consensus 239 L~~d~~IIRNr~KIrAII~NArailkI~~E~G 270 (271)
||+|++|||||+||+|||+||+++++|++|||
T Consensus 79 Ll~d~gIIRnr~KI~A~i~NA~~~l~i~~e~g 110 (186)
T 2jg6_A 79 LMTFPNIVHHRKKLEAIVNQAQGYLKIEQAYG 110 (186)
T ss_dssp HTTCTTSCCCHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HhcCccchhhHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999998
No 2
>2ofk_A 3-methyladenine DNA glycosylase I, constitutive; DNA repair, base excision, helix-hairpin-helix, hydrolase; HET: PGE; 1.50A {Salmonella typhi} PDB: 2ofi_A* 1lmz_A 1nku_A 1p7m_A*
Probab=100.00 E-value=1.1e-54 Score=378.72 Aligned_cols=110 Identities=37% Similarity=0.708 Sum_probs=107.6
Q ss_pred CCCCCCCCCCCChhhhhhhhcCCCccccChHHHHHHHHHHHHhccCCHHHHHHhHHHHHHHHhCCCHHHHhcCCHHHHHH
Q 024157 159 KKRCAWVTPNTDPCYAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLA 238 (271)
Q Consensus 159 ~~RC~Wa~~~~dply~~YHD~EWGvPvhDDr~LFElL~LEgfQAGLSW~tILkKRe~fReAF~~FDp~~VA~~~E~~Ie~ 238 (271)
++||.|++ +||+|++|||+|||+|+|||++|||+||||+|||||||.|||+||++||+||+||||++||.|+|++|++
T Consensus 1 ~~RC~W~~--~~ply~~YHD~EWG~P~~Dd~~LFE~L~Le~fQAGLSW~tIL~KRe~fr~AF~~Fd~~~VA~~~e~~ve~ 78 (183)
T 2ofk_A 1 MQRCDWVS--QDPLYIAYHDNEWGVPETDSRKLFEMICLEGQQAGLSWITVLKKRENYRACFHQFDPIRIAAMQEEDVER 78 (183)
T ss_dssp -CCCTTCC--SCHHHHHHHHHTTTCCCCCHHHHHHHHHHHHHTTTSCHHHHHHTHHHHHHHTGGGCHHHHHTCCHHHHHH
T ss_pred CCCCCCCC--CChHHHHHHHhccCCcccCcHHHHHHHHHHHHhccCCHHHHHHhHHHHHHHHcCCCHHHHcCCCHHHHHH
Confidence 46999996 7999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccchhhcchhHHHHHHHHHHHHHHHHHhcC
Q 024157 239 AGSAASSLLSELKLRAIIENARQISKVDFYFH 270 (271)
Q Consensus 239 L~~d~~IIRNr~KIrAII~NArailkI~~E~G 270 (271)
||+|++|||||+||+|||+||+++++|++|||
T Consensus 79 Ll~d~~IIRnr~KI~A~i~NA~~~l~i~~e~G 110 (183)
T 2ofk_A 79 LLQNTGIIRHRGKIQAIISNARAWLAMEQNGE 110 (183)
T ss_dssp HTTCTTSCCCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HhcCCcchhhHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999998
No 3
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=95.78 E-value=0.029 Score=49.18 Aligned_cols=90 Identities=17% Similarity=0.141 Sum_probs=70.3
Q ss_pred CChhhhhhhhcCCCccccChHHHHHHHHHHHHhccCCHHHHHHhHHHHHHHHhCC--CHHHHhcCCHHHHHHhhccchhh
Q 024157 169 TDPCYAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVFVGF--DPIAVSKLNEKKLLAAGSAASSL 246 (271)
Q Consensus 169 ~dply~~YHD~EWGvPvhDDr~LFElL~LEgfQAGLSW~tILkKRe~fReAF~~F--Dp~~VA~~~E~~Ie~L~~d~~II 246 (271)
.|+.+....+..-|.+.....-.||.|+-.+...-.+|..+.+-...|.+.|..+ +|+.|+..++++|.. +-
T Consensus 29 ~d~~l~~l~~~~~~~~~~~~~dpfe~Lv~~IlsQqts~~~a~~~~~rL~~~~G~~fPtp~~la~~~~e~Lr~------~G 102 (233)
T 2h56_A 29 QDSRLFQFIEIAGEVQLPTKPNPFQSLVSSIVEQQLSIKAASAIYGRVEQLVGGALEKPEQLYRVSDEALRQ------AG 102 (233)
T ss_dssp TCHHHHHHHHHHCCEEEECCSCHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTSCCCCTHHHHTSCHHHHHH------TT
T ss_pred cCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCCHHHHHcCCHHHHHH------cC
Confidence 5676665554444444333344899999999999999999999999999999877 999999999999833 33
Q ss_pred cchhHHHHHHHHHHHHHH
Q 024157 247 LSELKLRAIIENARQISK 264 (271)
Q Consensus 247 RNr~KIrAII~NArailk 264 (271)
-.++|.+.|++=|+.+.+
T Consensus 103 ~~~~KA~~I~~~A~~i~~ 120 (233)
T 2h56_A 103 VSKRKIEYIRHVCEHVES 120 (233)
T ss_dssp CCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 567888889888888753
No 4
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=95.54 E-value=0.1 Score=45.47 Aligned_cols=70 Identities=16% Similarity=0.044 Sum_probs=59.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHhHHHHHHHHhCCCHHHHhcCCHHHHHHhhccchhhcchhHHHHHHHHHHHHHH
Q 024157 191 LFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISK 264 (271)
Q Consensus 191 LFElL~LEgfQAGLSW~tILkKRe~fReAF~~FDp~~VA~~~E~~Ie~L~~d~~IIRNr~KIrAII~NArailk 264 (271)
.||.|+-+++..-.+|..+.+-...|.+.| -+|+.|+..++++|++++..-++- +.|.+.|++=|+.+.+
T Consensus 33 pfe~Lv~~IlsQqts~~~v~~~~~~l~~~f--pt~~~la~a~~~~l~~~i~~~G~~--~~KA~~l~~~a~~i~~ 102 (226)
T 1orn_A 33 PFELLIAVVLSAQCTDALVNKVTKRLFEKY--RTPHDYIAVPLEELEQDIRSIGLY--RNKARNIQKLCAMLID 102 (226)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHC--CSHHHHHSSCHHHHHHHTGGGSSH--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHHC--CCHHHHHcCCHHHHHHHHHHcCCh--HHHHHHHHHHHHHHHH
Confidence 699999999999999999998888887776 489999999999999988766654 4677788888877753
No 5
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=95.47 E-value=0.015 Score=51.24 Aligned_cols=67 Identities=12% Similarity=0.087 Sum_probs=57.6
Q ss_pred ChHHHHHHHHHHHHhccCCHHHHHHhHHHHHHHHhCCCHHHHhcCCHHHHHHhhccchhhc-chhHHHHHHHHHHHH
Q 024157 187 DDKKLFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLL-SELKLRAIIENARQI 262 (271)
Q Consensus 187 DDr~LFElL~LEgfQAGLSW~tILkKRe~fReAF~~FDp~~VA~~~E~~Ie~L~~d~~IIR-Nr~KIrAII~NArai 262 (271)
.+.-.||.|+..++.+..+|..+.+-.+.| |+.++.+++++|++++...+ +| .+.|.+.|+++|+.+
T Consensus 46 ~~~~~fe~Lv~~ILsqqts~~~~~~a~~~L--------p~~l~~~~~eeL~~~Ir~~G-~Rf~~~KA~~I~~~a~~i 113 (219)
T 3n0u_A 46 TEEDLFCELSFCVLTANWSAEGGIRAQKEI--------GKGFVHLPLEELAEKLREVG-HRYPQKRAEFIVENRKLL 113 (219)
T ss_dssp CHHHHHHHHHHHHHTTTSCHHHHHHHHHHH--------TTHHHHCCHHHHHHHHHHTT-CSSHHHHHHHHHHHGGGT
T ss_pred CCCCHHHHHHHHHHhCCCCHHHHHHHHHHH--------HHHHHcCCHHHHHHHHHHhc-chHHHHHHHHHHHHHHHH
Confidence 567799999999999999999987655554 78899999999999988777 45 789999999999976
No 6
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=95.41 E-value=0.039 Score=48.15 Aligned_cols=90 Identities=22% Similarity=0.111 Sum_probs=71.8
Q ss_pred CChhhhhhhhcCCCc-cccChHHHHHHHHHHHHhccCCHHHHHHhHHHHHHHHhCCCHHHHhcCCHHHHHHhhccchhhc
Q 024157 169 TDPCYAAFHDEEWGV-PVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLL 247 (271)
Q Consensus 169 ~dply~~YHD~EWGv-PvhDDr~LFElL~LEgfQAGLSW~tILkKRe~fReAF~~FDp~~VA~~~E~~Ie~L~~d~~IIR 247 (271)
.|+.+..-.+..-|. +.....-.||.|+-.+.-.-.+|..+.+-...|.+.|...+|+.|+..++++|.. +-.
T Consensus 38 ~D~~l~~l~~~~~~~~~~~~~~dpfe~Lv~~IlsQq~s~~~a~~~~~rL~~~~G~ptp~~la~~~~e~Lr~------~G~ 111 (225)
T 2yg9_A 38 RDPVLAQVTSLCGELPVLAPTPDPFGRLVRSVAGQQLSVKAAQAIYGRLEGLPGGVVPAALLKVSGDDLRG------VGL 111 (225)
T ss_dssp TSHHHHHHHHHHCCCCCCCCCSCHHHHHHHHHHHTTSCHHHHHHHHHHHHTSTTCSCHHHHTTSCHHHHHH------TTC
T ss_pred cCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHhCcChHHHHHHHHHHHHHHhCcCCHHHHHcCCHHHHHH------CCC
Confidence 688777666655555 3444445899999999999999999999988898888888999999999998843 224
Q ss_pred chhHHHHHHHHHHHHHH
Q 024157 248 SELKLRAIIENARQISK 264 (271)
Q Consensus 248 Nr~KIrAII~NArailk 264 (271)
.+.|.+.|++=|+.+.+
T Consensus 112 ~~~KA~~i~~lA~~~~~ 128 (225)
T 2yg9_A 112 SWAKVRTVQAAAAAAVS 128 (225)
T ss_dssp CHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHh
Confidence 57899999998888754
No 7
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=94.52 E-value=0.16 Score=43.88 Aligned_cols=70 Identities=13% Similarity=0.010 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhccCCHHHHHHhHHHHHHHHhCCCHHHHhcCCHHHHHHhhccchhhcchhHHHHHHHHHHHHHH
Q 024157 191 LFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISK 264 (271)
Q Consensus 191 LFElL~LEgfQAGLSW~tILkKRe~fReAF~~FDp~~VA~~~E~~Ie~L~~d~~IIRNr~KIrAII~NArailk 264 (271)
.||.|+-+++..-.+|..+.+-...|.+.| .+|+.|+..++++|++++..-++ .+.|.+.|++=|+.+.+
T Consensus 35 pfe~lv~~IlsQqts~~~~~~~~~~l~~~f--ptp~~la~a~~e~l~~~i~~~G~--~~~KA~~l~~~a~~i~~ 104 (221)
T 1kea_A 35 PYVILITEILLRRTTAGHVKKIYDKFFVKY--KCFEDILKTPKSEIAKDIKEIGL--SNQRAEQLKELARVVIN 104 (221)
T ss_dssp HHHHHHHHHHTTTSCHHHHHHHHHHHHHHC--CSHHHHHHSCHHHHHHHTGGGSC--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHHC--CCHHHHHCCCHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHH
Confidence 799999999999999999999888888886 67999999999999988776554 46788888888887754
No 8
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=94.39 E-value=0.092 Score=44.96 Aligned_cols=71 Identities=18% Similarity=0.098 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHhccCCHHHHHHhHHHHHHHHhCCCHHHHhcCCHHHHHHhhccchhhcchhHHHHHHHHHHHHHH
Q 024157 190 KLFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISK 264 (271)
Q Consensus 190 ~LFElL~LEgfQAGLSW~tILkKRe~fReAF~~FDp~~VA~~~E~~Ie~L~~d~~IIRNr~KIrAII~NArailk 264 (271)
-.||.|+-+++..-.+|..+.+-.+.|.+.| .+|+.|+..++++|++++..-+. .+.|.+.|++=|+.+.+
T Consensus 28 ~pfe~lv~~Il~qqts~~~v~~~~~~l~~~f--pt~~~la~a~~~~l~~~i~~~G~--~~~KA~~l~~~a~~~~~ 98 (211)
T 2abk_A 28 SPFELLIAVLLSAQATDVSVNKATAKLYPVA--NTPAAMLELGVEGVKTYIKTIGL--YNSKAENIIKTCRILLE 98 (211)
T ss_dssp SHHHHHHHHHHTTTSCHHHHHHHHHHHTTTC--CSHHHHHHHHHHHHHHHHTTSTT--HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCCHHHHHHHHHHHHHHC--CCHHHHHCCCHHHHHHHHHHcCC--ChHHHHHHHHHHHHHHH
Confidence 3799999999999999999887666654443 47999999999999988776554 56788888888887754
No 9
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=93.86 E-value=0.23 Score=42.93 Aligned_cols=69 Identities=10% Similarity=0.115 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhccCCHHHHHHhHHHHHHHHhCCCHHHHhcCCHHHHHHhhccchhhcchhHHHHHHHHHHHHHH
Q 024157 191 LFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISK 264 (271)
Q Consensus 191 LFElL~LEgfQAGLSW~tILkKRe~fReAF~~FDp~~VA~~~E~~Ie~L~~d~~IIRNr~KIrAII~NArailk 264 (271)
.||.|+-+++..-.+|..+..-...|.+.| .+|+.|+..++++|+++...-+.- .|.+.|++=|+.+.+
T Consensus 30 pfe~lv~~IlsQqt~~~~v~~~~~~l~~~~--pt~~~la~~~~~~l~~~i~~~G~~---~kA~~l~~~a~~i~~ 98 (225)
T 1kg2_A 30 PYKVWLSEVMLQQTQVATVIPYFERFMARF--PTVTDLANAPLDEVLHLWTGLGYY---ARARNLHKAAQQVAT 98 (225)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHHHHHC--SSHHHHHHSCHHHHHHHHTTSCCT---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCHHHHHHHHHHHHHHC--CCHHHHHCCCHHHHHHHHHhCChH---HHHHHHHHHHHHHHH
Confidence 699999999999999999988766666555 379999999999999887766654 288888888887753
No 10
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=93.61 E-value=0.31 Score=42.88 Aligned_cols=90 Identities=17% Similarity=0.113 Sum_probs=68.6
Q ss_pred CChhhhhhhhcCCCc--cccChHHHHHHHHHHHHhccCCHHHHHHhHHHHHHHHhC---C-CHHHHhcCCHHHHHHhhcc
Q 024157 169 TDPCYAAFHDEEWGV--PVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVFVG---F-DPIAVSKLNEKKLLAAGSA 242 (271)
Q Consensus 169 ~dply~~YHD~EWGv--PvhDDr~LFElL~LEgfQAGLSW~tILkKRe~fReAF~~---F-Dp~~VA~~~E~~Ie~L~~d 242 (271)
.||.+..-.+..-|. |....+-.||.|+-.+.-.-.+|..+.+-...|.+.|.. | +|+.|+..++++|..
T Consensus 36 ~Dp~l~~li~~~~g~rl~~~~~~dpfe~Lv~~Il~Qq~s~~~a~~~~~rL~~~~G~~~~fPtpe~la~~~~e~Lr~---- 111 (232)
T 4b21_A 36 IDNKWSSLVKKVGPCTLTPHPEHAPYEGIIRAITSQKLSDAATNSIINKFCTQCSDNDEFPTPKQIMETDVETLHE---- 111 (232)
T ss_dssp TCHHHHHHHHHHCSCCCCCCTTSCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHCSSSSCCCHHHHHTSCHHHHHT----
T ss_pred hCHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHhCcCcHHHHHHHHHHHHHHhCCCCCCCCHHHHHcCCHHHHHH----
Confidence 477665555554452 222223379999999999999999999999999999975 5 999999999998743
Q ss_pred chhhcchhHHHHHHHHHHHHHH
Q 024157 243 ASSLLSELKLRAIIENARQISK 264 (271)
Q Consensus 243 ~~IIRNr~KIrAII~NArailk 264 (271)
+-..++|.+.|++=|+++.+
T Consensus 112 --~Gl~~~Ka~~l~~~A~~~~~ 131 (232)
T 4b21_A 112 --CGFSKLKSQEIHIVAEAALN 131 (232)
T ss_dssp --TTCCHHHHHHHHHHHHHHHT
T ss_pred --cCCcHHHHHHHHHHHHHHHh
Confidence 23467888888888888763
No 11
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=93.32 E-value=0.31 Score=42.63 Aligned_cols=88 Identities=16% Similarity=0.095 Sum_probs=68.7
Q ss_pred CChhhhhhhhcCCCcccc--ChH-HHHHHHHHHHHhccCCHHHHHHhHHHHHHHH---hCC-CHHHHhcCCHHHHHHhhc
Q 024157 169 TDPCYAAFHDEEWGVPVH--DDK-KLFELLVLSGALSELTWPAILSKRHIFREVF---VGF-DPIAVSKLNEKKLLAAGS 241 (271)
Q Consensus 169 ~dply~~YHD~EWGvPvh--DDr-~LFElL~LEgfQAGLSW~tILkKRe~fReAF---~~F-Dp~~VA~~~E~~Ie~L~~ 241 (271)
.||.+..-.+..-|..+. ..+ -.||.|+-.+...-.+|..+.+-+..| +.| ..| +|+.|+..++++|..
T Consensus 25 ~Dp~l~~li~~~g~~r~~~~~~~~d~fe~Lv~~Il~Qq~s~~~a~~~~~rL-~~~Gg~~~fPtp~~la~~~~e~Lr~--- 100 (228)
T 3s6i_A 25 LDENWKRLVKLVGNYRPNRSMEKKEPYEELIRAVASQQLHSKAANAIFNRF-KSISNNGQFPTPEEIRDMDFEIMRA--- 100 (228)
T ss_dssp SCHHHHHHHHHHCSCCCCCTTTTSCHHHHHHHHHHHSSSCHHHHHHHHHHH-HTSSGGGSCCCHHHHHHSCHHHHHH---
T ss_pred hChHHHHHHHHcCCCCCCCCCCcCCHHHHHHHHHHhCcCCHHHHHHHHHHH-HHhcCCCCCCCHHHHHcCCHHHHHH---
Confidence 588777666665554442 222 479999999999999999999999999 888 345 999999999998843
Q ss_pred cchhhcchhHHHHHHHHHHHHH
Q 024157 242 AASSLLSELKLRAIIENARQIS 263 (271)
Q Consensus 242 d~~IIRNr~KIrAII~NArail 263 (271)
+--.++|.+.|++=|+++.
T Consensus 101 ---~G~~~rKa~~i~~~A~~~~ 119 (228)
T 3s6i_A 101 ---CGFSARKIDSLKSIAEATI 119 (228)
T ss_dssp ---HTCCHHHHHHHHHHHHHHH
T ss_pred ---cCCCHHHHHHHHHHHHHHH
Confidence 3356788899988888876
No 12
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=92.49 E-value=0.53 Score=43.00 Aligned_cols=72 Identities=10% Similarity=0.126 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHHHhccCCHHHHHHhHHHHHHHHhCCCHHHHhcCCHHHHHHhhccchhhcchhHHHHHHHHHHHHHH
Q 024157 188 DKKLFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISK 264 (271)
Q Consensus 188 Dr~LFElL~LEgfQAGLSW~tILkKRe~fReAF~~FDp~~VA~~~E~~Ie~L~~d~~IIRNr~KIrAII~NArailk 264 (271)
.+-.||.|+-+++-.-.+|..+..-...|.+.|- +++.|+..++++|+++...-+.- + |.+.|++=|+.+.+
T Consensus 46 ~~dpfe~LVs~ILsQQts~~~v~~~~~rL~~~fp--tpe~La~a~~eel~~~ir~lG~~--~-KA~~L~~~A~~i~~ 117 (287)
T 3n5n_X 46 DRRAYAVWVSEVMLQQTQVATVINYYTGWMQKWP--TLQDLASASLEEVNQLWAGLGYY--S-RGRRLQEGARKVVE 117 (287)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC--SHHHHHTSCHHHHHHHHTTSSCH--H-HHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHCC--CHHHHHcCCHHHHHHHHHHcCCH--H-HHHHHHHHHHHHHH
Confidence 4678999999999999999999998888888774 89999999999999988766664 3 78888888887753
No 13
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=92.22 E-value=0.87 Score=41.03 Aligned_cols=87 Identities=16% Similarity=0.126 Sum_probs=68.9
Q ss_pred CChhhhhhhhcCCCccccChHHHHHHHHHHHHhccCCHHHHHHhHHHHHHHHhC-----------C-CHHHHhcCCHHHH
Q 024157 169 TDPCYAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVFVG-----------F-DPIAVSKLNEKKL 236 (271)
Q Consensus 169 ~dply~~YHD~EWGvPvhDDr~LFElL~LEgfQAGLSW~tILkKRe~fReAF~~-----------F-Dp~~VA~~~E~~I 236 (271)
.||.+..-.+.-.|..+.. +-.||.|+-.+.-.-.+|..+.+-...|.+.|.. | +|+.|+..++++|
T Consensus 94 ~Dp~l~~~~~~~~glR~~~-~dpfE~Lv~~IlsQq~s~~~a~~~~~rL~~~~G~~~~~~g~~~~~fPtpe~la~~~~e~L 172 (290)
T 3i0w_A 94 RDPLLKKSVDFGEGIRILR-QDPFEILLSFIISANNRIPMIKKCINNISEKAGKKLEYKGKIYYAFPTVDKLHEFTEKDF 172 (290)
T ss_dssp TSHHHHHHHHHTTTCCCCC-CCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSCEEEETTEEEECCCCHHHHTTCCHHHH
T ss_pred hCHHHHHHHHHCCCCCCCC-CCHHHHHHHHHHhCcccHHHHHHHHHHHHHHhCCCcccCCcccccCCcHHHHHCCCHHHH
Confidence 3666665555567766655 5689999999999999999999999999999754 5 9999999999999
Q ss_pred HHhhccchhhcchhHHHHHHHHHHHHH
Q 024157 237 LAAGSAASSLLSELKLRAIIENARQIS 263 (271)
Q Consensus 237 e~L~~d~~IIRNr~KIrAII~NArail 263 (271)
..+. +- .|.+.|+.=|+++.
T Consensus 173 ~~~g----~g---~Ra~~I~~~A~~i~ 192 (290)
T 3i0w_A 173 EECT----AG---FRAKYLKDTVDRIY 192 (290)
T ss_dssp HHTT----CG---GGHHHHHHHHHHHH
T ss_pred HHcC----Cc---hHHHHHHHHHHHHH
Confidence 8742 21 26788888888775
No 14
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=91.92 E-value=0.62 Score=40.29 Aligned_cols=71 Identities=15% Similarity=0.171 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhccCCHHHHHHhHHHHHHH-HhCCC----HHHHhcCCHHHHHHhhccchhhcchhHHHHHHHHHHHHH
Q 024157 191 LFELLVLSGALSELTWPAILSKRHIFREV-FVGFD----PIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQIS 263 (271)
Q Consensus 191 LFElL~LEgfQAGLSW~tILkKRe~fReA-F~~FD----p~~VA~~~E~~Ie~L~~d~~IIRNr~KIrAII~NArail 263 (271)
-||.|+-.+...-.+|..+.+-...|.+. |-..+ |+.|+..++++|++++..-+ -.+.|.+.|+.=|+++.
T Consensus 30 pfe~Lv~~ILsQqts~~~v~~~~~~L~~~~~pt~~~~~t~~~la~~~~e~L~~~ir~~G--~~~~KA~~L~~~a~~i~ 105 (218)
T 1pu6_A 30 KFEALLGAVLTQNTKFEAVLKSLENLKNAFILENDDEINLKKIAYIEFSKLAECVRPSG--FYNQKAKRLIDLSGNIL 105 (218)
T ss_dssp SHHHHHHHHHTTTSCHHHHHHHHHHHHHTTSSCSCHHHHHHHHHHSCHHHHHHHTGGGS--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCCccccccHHHHHhCCHHHHHHHHHHCC--CcHHHHHHHHHHHHHHH
Confidence 58999999999999999999877777776 54322 99999999999998876655 34667788888887764
No 15
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=90.57 E-value=1.1 Score=37.54 Aligned_cols=67 Identities=9% Similarity=0.055 Sum_probs=53.3
Q ss_pred HHHHHHHHHhccCCHHHHHHhHHHHHHHHhCCCHHHHhcCCHHHHHHhhccchhhcchhHHHHHHHHHHHH
Q 024157 192 FELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQI 262 (271)
Q Consensus 192 FElL~LEgfQAGLSW~tILkKRe~fReAF~~FDp~~VA~~~E~~Ie~L~~d~~IIRNr~KIrAII~NArai 262 (271)
|+.|+-+++.+--+|.++..--+.|.+.|- +++.+++.++++|+++...-|.-++ |-+.|++-|+.+
T Consensus 32 ~~vLVs~ILsqQT~~~~v~~~~~~l~~~~p--t~~~la~a~~~el~~~i~~lG~y~~--KAk~i~~~a~~~ 98 (161)
T 4e9f_A 32 WKLLIATIFLNRTSGKMAIPVLWKFLEKYP--SAEVARTADWRDVSELLKPLGLYDL--RAKTIVKFSDEY 98 (161)
T ss_dssp HHHHHHHHHTTTSCHHHHHHHHHHHHHHSC--SHHHHTTSCHHHHHHHHGGGSCHHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCcHHHHHHHHHHHHHHCC--CHHHHhccChHhHHhHhhhcCCHHH--HHHHHHHHhCCc
Confidence 899999999999999999876666655543 8999999999999999887776544 545566666654
No 16
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=90.27 E-value=1.2 Score=40.86 Aligned_cols=72 Identities=14% Similarity=0.217 Sum_probs=59.9
Q ss_pred hHHHHHHHHHHHHhccCCHHHHHHhHHHHHHHHhCCCHHHHhcCCHHHHHHhhccchhhcchhHHHHHHHHHHHHHH
Q 024157 188 DKKLFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISK 264 (271)
Q Consensus 188 Dr~LFElL~LEgfQAGLSW~tILkKRe~fReAF~~FDp~~VA~~~E~~Ie~L~~d~~IIRNr~KIrAII~NArailk 264 (271)
.+--||.|+-+++..-.+|.++..-...|.+.| .+++.++..++++|+++...-+.- + |.+.|++=|+.+.+
T Consensus 36 ~~~p~~~lv~~il~qqt~~~~~~~~~~~l~~~~--pt~~~la~a~~~~l~~~i~~~G~~--~-ra~~l~~~a~~~~~ 107 (369)
T 3fsp_A 36 DRDPYKVWVSEVMLQQTRVETVIPYFEQFIDRF--PTLEALADADEDEVLKAWEGLGYY--S-RVRNLHAAVKEVKT 107 (369)
T ss_dssp CCCHHHHHHHHHHTTTSCHHHHHHHHHHHHHHC--CSHHHHHTSCHHHHHHTTTTSSCT--H-HHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHhccCcHHHHHHHHHHHHHHC--CCHHHHHCCCHHHHHHHHHhcChH--H-HHHHHHHHHHHHHH
Confidence 344699999999999999999998888887776 589999999999999887766653 4 78888888888754
No 17
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=89.84 E-value=0.8 Score=39.20 Aligned_cols=69 Identities=13% Similarity=0.119 Sum_probs=57.4
Q ss_pred ChHHHHHHHHHHHHhccCCHHHHHHhHHHHHHHHhCCCHHHHhcCCHHHHHHhhccchhhcchhHHHHHHHHHHHHH
Q 024157 187 DDKKLFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQIS 263 (271)
Q Consensus 187 DDr~LFElL~LEgfQAGLSW~tILkKRe~fReAF~~FDp~~VA~~~E~~Ie~L~~d~~IIRNr~KIrAII~NArail 263 (271)
..+-.||.|+-++.-.-.+|..+.+-.+.| ++.++..++++|++++...++--.+.|.+.|.+-|+.+.
T Consensus 29 ~~~~~fe~Lv~~ILsqqts~~~~~~~~~~L--------~~~l~~~~~e~l~~~ir~~G~g~~~~KA~~l~~~a~~~~ 97 (207)
T 3fhg_A 29 NEEVWFRELTLCLLTANSSFISAYQALNCL--------GQKIYYANEEEIRNILKSCKYRFYNLKAKYIIMAREKVY 97 (207)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHHH--------GGGGGTCCHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHT
T ss_pred CcCCHHHHHHHHHHcCCCCHHHHHHHHHHH--------HHHHHcCCHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH
Confidence 567799999999999999999998877777 578999999999988766554457789999998888553
No 18
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=88.44 E-value=0.99 Score=40.56 Aligned_cols=87 Identities=17% Similarity=0.133 Sum_probs=66.5
Q ss_pred CChhhhhhhhcCCCccccC--hHHHHHHHHHHHHhccCCHHHHHHhHHHHHHHHhC-----------C-CHHHHhcCCHH
Q 024157 169 TDPCYAAFHDEEWGVPVHD--DKKLFELLVLSGALSELTWPAILSKRHIFREVFVG-----------F-DPIAVSKLNEK 234 (271)
Q Consensus 169 ~dply~~YHD~EWGvPvhD--Dr~LFElL~LEgfQAGLSW~tILkKRe~fReAF~~-----------F-Dp~~VA~~~E~ 234 (271)
.|+.+..-.+..-|..+.- ..-.||.|+-.+...-.+|..+.+-...|.+.|.. | +|+.|+..+++
T Consensus 94 ~D~~l~~l~~~~~glr~~~~~~~d~fe~lv~~Il~Qq~s~~~a~~~~~rL~~~~G~~~~~~g~~~~~fPtp~~la~~~~~ 173 (295)
T 2jhn_A 94 GDEKLRMLKNRFYGFGRAGLMSMSVFEGIAKAIIQQQISFVVAEKLAAKIVGRFGDEVEWNGLKFYGFPTQEAILKAGVE 173 (295)
T ss_dssp TSHHHHHHHHHTTTCCSCCCSCSSHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSCEEEETTEEEECCCCHHHHHHHHHH
T ss_pred cCHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHcCcccHHHHHHHHHHHHHHhCCCCCCCCCccccCCCHHHHHcCCHH
Confidence 4666665555555655543 45589999999999999999999999999999864 4 79999999988
Q ss_pred HHHHhhccchhhcchhHHHHHHHHHHH
Q 024157 235 KLLAAGSAASSLLSELKLRAIIENARQ 261 (271)
Q Consensus 235 ~Ie~L~~d~~IIRNr~KIrAII~NAra 261 (271)
+|..+ --.++|.+.|+.=|++
T Consensus 174 ~Lr~~------G~~~rKa~~i~~~A~~ 194 (295)
T 2jhn_A 174 GLREC------GLSRRKAELIVEIAKE 194 (295)
T ss_dssp HHHHT------TCCHHHHHHHHHHHTC
T ss_pred HHHHc------CCCHHHHHHHHHHHHC
Confidence 87433 2467777777776654
No 19
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=87.59 E-value=2.6 Score=37.39 Aligned_cols=78 Identities=14% Similarity=0.051 Sum_probs=62.4
Q ss_pred CCccccChHHHHHHHHHHHHhccCCHHHHHHhHHHHHHHHhC----------C-CHHHHhcCCHHHHHHhhccchhhcch
Q 024157 181 WGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVFVG----------F-DPIAVSKLNEKKLLAAGSAASSLLSE 249 (271)
Q Consensus 181 WGvPvhDDr~LFElL~LEgfQAGLSW~tILkKRe~fReAF~~----------F-Dp~~VA~~~E~~Ie~L~~d~~IIRNr 249 (271)
.|..+....-.||.|+-.+...-.+|..+.+-...|.+.|.. | +|+.|+..++++|..+ --.+
T Consensus 103 ~glR~~~~~d~fe~lv~~Il~Qq~s~~~a~~~~~rL~~~~G~~~~~~~~~~~fPtp~~la~~~~~~Lr~~------G~~~ 176 (282)
T 1mpg_A 103 PGLRLPGCVDAFEQGVRAILGQLVSVAMAAKLTARVAQLYGERLDDFPEYICFPTPQRLAAADPQALKAL------GMPL 176 (282)
T ss_dssp TTCCCCCCSCHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHCCBCSSCTTCBCCCCHHHHHTCCHHHHHHT------TSCH
T ss_pred CCCcCCCCCCHHHHHHHHHHhCcccHHHHHHHHHHHHHHhCCCCCCCCCcccCCCHHHHHcCCHHHHHHc------CCCH
Confidence 455554445589999999999999999999999999998743 4 7999999999998432 3457
Q ss_pred hHHHHHHHHHHHHHH
Q 024157 250 LKLRAIIENARQISK 264 (271)
Q Consensus 250 ~KIrAII~NArailk 264 (271)
.|.+.|+.=|+++.+
T Consensus 177 ~ra~~i~~~A~~~~~ 191 (282)
T 1mpg_A 177 KRAEALIHLANAALE 191 (282)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc
Confidence 788888888888753
No 20
>2d3d_A VTS1 protein; RNA binding, SAM domain, SRE hairpin binding, RNA binding protein; 1.60A {Saccharomyces cerevisiae} PDB: 2f8k_A 2fe9_A
Probab=85.80 E-value=1.4 Score=34.31 Aligned_cols=47 Identities=19% Similarity=0.195 Sum_probs=39.3
Q ss_pred HHHHHHHhCCCHHHHhcCCHHHHHHhhccchhhcchhHHHHHHHHHHHH
Q 024157 214 HIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQI 262 (271)
Q Consensus 214 e~fReAF~~FDp~~VA~~~E~~Ie~L~~d~~IIRNr~KIrAII~NArai 262 (271)
+-|.+.|.+.+.+.+..|+|++++.+... ..-+|+||...|+.-|..
T Consensus 31 hKY~~~F~~~~~~~l~~LtdedL~~~GVt--a~GaRrKil~aI~~lr~~ 77 (88)
T 2d3d_A 31 HKYSDALSGTPWIELIYLDDETLEKKGVL--ALGARRKLLKAFGIVIDY 77 (88)
T ss_dssp GGGHHHHTTSCHHHHTTCCHHHHHHTTCC--CHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHhcCCHHHHHHcCHHHHHHcCCc--cHhHHHHHHHHHHHHHHH
Confidence 56889999999999999999999998765 246899999888866654
No 21
>2b6g_A VTS1P; alpha-helix, pentaloop, hairpin, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=84.34 E-value=2.4 Score=34.71 Aligned_cols=54 Identities=20% Similarity=0.240 Sum_probs=42.6
Q ss_pred HHHHHHhHHHHHHHHhCCCHHHHhcCCHHHHHHhhccchhhcchhHHHHHHHHHHHH
Q 024157 206 WPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQI 262 (271)
Q Consensus 206 W~tILkKRe~fReAF~~FDp~~VA~~~E~~Ie~L~~d~~IIRNr~KIrAII~NArai 262 (271)
|..-|+ -.-|.+.|.+.|.+.+..++|++|+.+... .+-+|+||...|+--+..
T Consensus 55 WL~sLr-L~KY~~~F~~~~~d~l~~LTeeDL~~lGVt--a~GaRrKlL~AI~~Lr~~ 108 (119)
T 2b6g_A 55 WLKSLR-LHKYSDALSGTPWIELIYLDDETLEKKGVL--ALGARRKLLKAFGIVIDY 108 (119)
T ss_dssp HHHHHT-CHHHHHHHTTSCHHHHTTCCHHHHHHHSCC--CHHHHHHHHHHHHHHHHH
T ss_pred HHHHCC-ChhHHHHHccCCHHHHHhcCHHHHHHCCCC--ccccHHHHHHHHHHHHhh
Confidence 554332 377999999999999999999999998654 357999999888766554
No 22
>1v38_A SAM-domain protein samsn-1; structural genomics, hypothetical protein, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.60.1.2
Probab=81.32 E-value=1.7 Score=32.10 Aligned_cols=43 Identities=14% Similarity=0.249 Sum_probs=33.5
Q ss_pred HHHHHHH--hCCC-HHHHhcCCHHHHHHhhccchhhcchhHHHHHHHH
Q 024157 214 HIFREVF--VGFD-PIAVSKLNEKKLLAAGSAASSLLSELKLRAIIEN 258 (271)
Q Consensus 214 e~fReAF--~~FD-p~~VA~~~E~~Ie~L~~d~~IIRNr~KIrAII~N 258 (271)
+.|.+.| ++|| .+.|+.++++++.+|... ..-||.||...|..
T Consensus 25 ~~Y~~~F~~~gy~~~~~~~~lt~~DL~~lGI~--~~ghrkkil~ai~~ 70 (78)
T 1v38_A 25 QEYTSTLLLNGYETLDDLKDIKESHLIELNIA--DPEDRARLLSAAES 70 (78)
T ss_dssp GGGHHHHHHHTCCBHHHHTTCCHHHHHHTTTC--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHhhcCHHHHHHcCCC--CHHHHHHHHHHHHH
Confidence 5677777 7995 999999999999998654 23589998776654
No 23
>2es6_A VTS1P; SAM domain, protein structure, gene regulation; NMR {Saccharomyces cerevisiae} PDB: 2ese_A
Probab=80.97 E-value=2.4 Score=33.89 Aligned_cols=47 Identities=19% Similarity=0.195 Sum_probs=38.0
Q ss_pred HHHHHHHhCCCHHHHhcCCHHHHHHhhccchhhcchhHHHHHHHHHHHH
Q 024157 214 HIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQI 262 (271)
Q Consensus 214 e~fReAF~~FDp~~VA~~~E~~Ie~L~~d~~IIRNr~KIrAII~NArai 262 (271)
.-|.+.|.+.+.+.+..+||++++.+... .+-+|.||...|+.-+..
T Consensus 44 hKY~~~F~~~~~~~l~~LTdedL~~~GVt--a~GARrKiL~aI~~Lr~~ 90 (101)
T 2es6_A 44 HKYSDALSGTPWIELIYLDDETLEKKGVL--ALGARRKLLKAFGIVIDY 90 (101)
T ss_dssp CCTHHHHTTSCHHHHTTCCHHHHHHHTCC--SHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHccCCHHHHHhcCHHHHHHcCCc--cHhHHHHHHHHHHHHHHH
Confidence 45778888999999999999999998754 246899999888865543
No 24
>1ucv_A Ephrin type-A receptor 8; receptor oligomerization, developmental regulation, tyrosine kinase, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=80.13 E-value=2.9 Score=30.83 Aligned_cols=46 Identities=22% Similarity=0.307 Sum_probs=35.4
Q ss_pred HHHHHHH--hCCC-HHHHhcCCHHHHHHhhccchhhcchhHHHHHHHHHHH
Q 024157 214 HIFREVF--VGFD-PIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQ 261 (271)
Q Consensus 214 e~fReAF--~~FD-p~~VA~~~E~~Ie~L~~d~~IIRNr~KIrAII~NAra 261 (271)
+.|.+.| .+|| .+.|..++++|+.+|... .+-||.||...|..-+.
T Consensus 20 ~~Y~~~F~~~~~d~~~~l~~lt~~DL~~lGI~--~~GhrkkIl~ai~~l~~ 68 (81)
T 1ucv_A 20 GRYRDHFAAGGYSSLGMVLRMNAQDVRALGIT--LMGHQKKILGSIQTMRA 68 (81)
T ss_dssp GGGHHHHHHTTCCBHHHHTTCCHHHHHHHTCC--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHcCHHHHHhCCCC--ChhHHHHHHHHHHHHHH
Confidence 4567777 4688 899999999999987554 24599999887776554
No 25
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ...
Probab=78.09 E-value=7 Score=36.39 Aligned_cols=87 Identities=16% Similarity=0.054 Sum_probs=62.3
Q ss_pred ChhhhhhhhcCCCccccChHHHHHHHHHHHHhccCCHHHHHHhHHHHHHHHhC-------------CCHHHHhcCCHH-H
Q 024157 170 DPCYAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVFVG-------------FDPIAVSKLNEK-K 235 (271)
Q Consensus 170 dply~~YHD~EWGvPvhDDr~LFElL~LEgfQAGLSW~tILkKRe~fReAF~~-------------FDp~~VA~~~E~-~ 235 (271)
||.+....+..-|..+.. .-.||.|+-.+...-.+|..|.+-...|.+.|.. -+|+.|+..+.+ .
T Consensus 132 Dp~l~~l~~~~~glR~~~-~dpfE~LV~~ILsQq~s~~~a~~~~~rL~~~~G~~~~~~~g~~~~~fPtpe~La~~~~ee~ 210 (360)
T 2xhi_A 132 DSHFQEVAQKFQGVRLLR-QDPIECLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVEAH 210 (360)
T ss_dssp CHHHHHHHHHSTTCCCCC-CCHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHSCEEEEETTEEEECCCCHHHHTSTTHHHH
T ss_pred CHHHHHHHHHcCCCCCCC-CCHHHHHHHHHHhCcCcHHHHHHHHHHHHHHhCCCcccCCCcccccCCCHHHHHcCCHHHH
Confidence 343333344455655544 4689999999999999999999999999998853 379999999754 3
Q ss_pred HHHhhccchhhcchhHHHHHHHHHHHHHH
Q 024157 236 LLAAGSAASSLLSELKLRAIIENARQISK 264 (271)
Q Consensus 236 Ie~L~~d~~IIRNr~KIrAII~NArailk 264 (271)
|.. -++ . .|.+.|+.=|+++.+
T Consensus 211 Lr~----~Gl-~--~RA~~I~~~A~~i~~ 232 (360)
T 2xhi_A 211 LRK----LGL-G--YRARYVSASARAILE 232 (360)
T ss_dssp HHH----TTC-T--THHHHHHHHHHHHHH
T ss_pred HHH----cCC-c--HHHHHHHHHHHHHHh
Confidence 433 233 2 478888888887753
No 26
>3k1r_B Usher syndrome type-1G protein; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens}
Probab=76.74 E-value=5.4 Score=29.25 Aligned_cols=44 Identities=18% Similarity=0.169 Sum_probs=34.2
Q ss_pred HHHHHHHhCCCHHHHhcCCHHHHHHhhccchhhcchhHHHHHHHHHHHH
Q 024157 214 HIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQI 262 (271)
Q Consensus 214 e~fReAF~~FDp~~VA~~~E~~Ie~L~~d~~IIRNr~KIrAII~NArai 262 (271)
+.|.+ +++|.+.+..|+++|+.++... +=+|.||-..|..=+..
T Consensus 19 ~~F~~--~~id~e~l~~lt~~DL~~lGI~---~G~RkkIl~ai~~~~~~ 62 (74)
T 3k1r_B 19 ALLRQ--EKIDLEALMLCSDLDLRSISVP---LGPREKILGAVRRRRQA 62 (74)
T ss_dssp HHHHH--TTCCHHHHTTCCHHHHHHTTCC---HHHHHHHHHHHHHHHHH
T ss_pred HHHHH--cCcCHHHHhHCCHHHHHHcCCC---cchHHHHHHHHHHHHHH
Confidence 45554 5789999999999999998776 44899998877655443
No 27
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=76.13 E-value=3.1 Score=36.31 Aligned_cols=67 Identities=10% Similarity=0.041 Sum_probs=51.7
Q ss_pred cChHHHHHHHHHHHHhccCCHHHHHHhHHHHHHHHhCCCHHHHhcCCHHHHHHhhccchhhcchhHHHHHHHHHH
Q 024157 186 HDDKKLFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENAR 260 (271)
Q Consensus 186 hDDr~LFElL~LEgfQAGLSW~tILkKRe~fReAF~~FDp~~VA~~~E~~Ie~L~~d~~IIRNr~KIrAII~NAr 260 (271)
.+.+-.||.|+..+.-+--+|..+.+--+.+. +.++.+++++|++++..-+.=-.+.|-+-|++-|+
T Consensus 39 ~~~~~~fe~Lv~~ILsqqt~~~~v~~a~~~L~--------~~l~~~~~eeL~~~Ir~~G~rf~~~KA~~I~~~a~ 105 (214)
T 3fhf_A 39 KSNEEWFKELCFCILTANFTAEGGIRIQKEIG--------DGFLTLPREELEEKLKNLGHRFYRKRAEYIVLARR 105 (214)
T ss_dssp SCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHT--------THHHHSCHHHHHHHHHHTTCTTHHHHHHHHHHHGG
T ss_pred CCCCChHHHHHHHHHcCCCCHHHHHHHHHHHH--------HHHHCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 35678999999999999999999987766663 56899999999998776563234556666666666
No 28
>1b0x_A Protein (EPHA4 receptor tyrosine kinase); protein interaction module, dimerization domain, transferase; 2.00A {Mus musculus} SCOP: a.60.1.2
Probab=74.73 E-value=4.8 Score=30.52 Aligned_cols=46 Identities=20% Similarity=0.382 Sum_probs=35.0
Q ss_pred HHHHHHHh--CC-CHHHHhcCCHHHHHHhhccchhhcchhHHHHHHHHHHH
Q 024157 214 HIFREVFV--GF-DPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQ 261 (271)
Q Consensus 214 e~fReAF~--~F-Dp~~VA~~~E~~Ie~L~~d~~IIRNr~KIrAII~NAra 261 (271)
+.|.+.|. +| |.+.|..|+++|+.++.... +-||.||...|..-+.
T Consensus 39 ~~Y~~~F~~~g~~~~~~l~~lt~~DL~~lGI~~--~GhrkkIl~ai~~L~~ 87 (94)
T 1b0x_A 39 DRYKDNFTAAGYTTLEAVVHMSQDDLARIGITA--ITHQNKILSSVQAMRT 87 (94)
T ss_dssp GGGHHHHHHTTCCSHHHHTTCCHHHHHHHTCCC--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHhhCCHHHHHHCCCCC--hhHHHHHHHHHHHHHH
Confidence 56677774 46 78999999999999886542 4599999887776554
No 29
>1b4f_A EPHB2; SAM domain, EPH receptor, signal transduction, oligomer; 1.95A {Homo sapiens} SCOP: a.60.1.2 PDB: 1f0m_A 1sgg_A
Probab=74.64 E-value=7.2 Score=28.51 Aligned_cols=47 Identities=23% Similarity=0.282 Sum_probs=35.0
Q ss_pred HHHHHHHh--CC-CHHHHhcCCHHHHHHhhccchhhcchhHHHHHHHHHHHH
Q 024157 214 HIFREVFV--GF-DPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQI 262 (271)
Q Consensus 214 e~fReAF~--~F-Dp~~VA~~~E~~Ie~L~~d~~IIRNr~KIrAII~NArai 262 (271)
+.|.+.|. +| |.+.+..++++++..+... .+-||.||...|..-+.-
T Consensus 24 ~~Y~~~F~~~~~~~~~~l~~lt~~dL~~lGI~--~~GhrkkIl~ai~~l~~~ 73 (82)
T 1b4f_A 24 GQYKESFANAGFTSFDVVSQMMMEDILRVGVT--LAGHQKKILNSIQVMRAQ 73 (82)
T ss_dssp GGGHHHHHHTTCCSHHHHTTCCHHHHHHTTCC--CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHhCCHHHHHHcCCC--CHHHHHHHHHHHHHHHHH
Confidence 35666664 57 7899999999999987553 235899998888776644
No 30
>2eao_A Ephrin type-B receptor 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.65 E-value=5.3 Score=30.54 Aligned_cols=45 Identities=24% Similarity=0.366 Sum_probs=33.4
Q ss_pred HHHHHHH--hCCC-HHHHhcCCHHHHHHhhccchhhcchhHHHHHHHHHH
Q 024157 214 HIFREVF--VGFD-PIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENAR 260 (271)
Q Consensus 214 e~fReAF--~~FD-p~~VA~~~E~~Ie~L~~d~~IIRNr~KIrAII~NAr 260 (271)
+.|.+.| ++|| .+.|..|+++++.+|... .+-||.||...|..-+
T Consensus 35 ~~Y~~~F~~~~~~~~~~L~~lt~~DL~~lGI~--~~GhRkkIl~ai~~l~ 82 (99)
T 2eao_A 35 VQYRDSFLTAGFTSLQLVTQMTSEDLLRIGIT--LAGHQKKILNSIHSMR 82 (99)
T ss_dssp GGGHHHHHHHTCCBHHHHTTCCHHHHHHHTCC--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHhhCCHHHHHHCCCC--ChhHHHHHHHHHHHHH
Confidence 4455666 4688 899999999999987554 2458999987776544
No 31
>2kso_A Ephrin type-A receptor 2; SAM domain, heterodimer, cell signaling, angiogenesis, apopt ATP-binding, cataract; NMR {Homo sapiens}
Probab=72.14 E-value=6.5 Score=29.20 Aligned_cols=45 Identities=11% Similarity=0.210 Sum_probs=34.4
Q ss_pred HHHHHHHh--CCC-HHHHhcCCHHHHHHhhccchhhcchhHHHHHHHHHH
Q 024157 214 HIFREVFV--GFD-PIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENAR 260 (271)
Q Consensus 214 e~fReAF~--~FD-p~~VA~~~E~~Ie~L~~d~~IIRNr~KIrAII~NAr 260 (271)
+.|.+.|. +|| .+.+..++++|+.+|.... +-+|.||...|..-+
T Consensus 29 ~qY~~~F~~~gid~~~~L~~lt~~DL~~lGI~~--~GhRkkIl~ai~~Lr 76 (82)
T 2kso_A 29 QQYTEHFMAAGYTAIEKVVQMTNDDIKRIGVRL--PGHQKRIAYSLLGLK 76 (82)
T ss_dssp TTHHHHHHHTTCCSHHHHTTCCHHHHHHHHCCC--TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHhCCHHHHHHCCCCC--hhHHHHHHHHHHHHH
Confidence 55677774 588 8999999999999886542 358999887776654
No 32
>2dl0_A SAM and SH3 domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.12 E-value=2.3 Score=32.87 Aligned_cols=43 Identities=21% Similarity=0.201 Sum_probs=33.3
Q ss_pred HHHHHHH--hCCC-HHHHhcCCHHHHHHhhccchhhcchhHHHHHHHH
Q 024157 214 HIFREVF--VGFD-PIAVSKLNEKKLLAAGSAASSLLSELKLRAIIEN 258 (271)
Q Consensus 214 e~fReAF--~~FD-p~~VA~~~E~~Ie~L~~d~~IIRNr~KIrAII~N 258 (271)
+.|.+.| ++|| .+.|..++++|+.+|... ..-||+||...|..
T Consensus 36 ~qY~~~F~~~g~d~le~l~~lt~~DL~~lGIt--~~gHrkkIl~ai~~ 81 (97)
T 2dl0_A 36 PMYAGTLSTAGFSTLSQVPSLSHTCLQEAGIT--EERHIRKLLSAARL 81 (97)
T ss_dssp GGGHHHHHHHTCCSTTSGGGCCHHHHHHHTCC--CHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCcHHHHHhcCHHHHHHCCCC--CHHHHHHHHHHHHH
Confidence 5677777 4688 789999999999988664 24699999776654
No 33
>2k4p_A Phosphatidylinositol-3,4,5-trisphosphate 5- phosphatase 2; helix bundle, signaling protein, actin-binding, alternative splicing, cell adhesion; NMR {Homo sapiens} PDB: 2kso_B
Probab=69.91 E-value=6 Score=30.02 Aligned_cols=42 Identities=24% Similarity=0.303 Sum_probs=32.2
Q ss_pred HHHHHHHh--CCC-HHHHhcCCHHHHHHhhccchhhcchhHHHHHHH
Q 024157 214 HIFREVFV--GFD-PIAVSKLNEKKLLAAGSAASSLLSELKLRAIIE 257 (271)
Q Consensus 214 e~fReAF~--~FD-p~~VA~~~E~~Ie~L~~d~~IIRNr~KIrAII~ 257 (271)
+.|.+.|. +|| .+.|..++++|+.++... .+-+|.||...|.
T Consensus 39 ~qY~~~F~~~g~~~le~l~~lt~~DL~~lGIt--~~GHRkkIL~aI~ 83 (86)
T 2k4p_A 39 ERYEEGLVHNGWDDLEFLSDITEEDLEEAGVQ--DPAHKRLLLDTLQ 83 (86)
T ss_dssp GGGHHHHHTTTCCCHHHHTTCCHHHHHHTTCC--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHhCCHHHHHHCCCC--CHHHHHHHHHHHH
Confidence 56777884 574 799999999999988654 2468999876665
No 34
>1x40_A ARAP2; ASAP-related protein2, GTPase activity, signal transduction, SAM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=69.63 E-value=4.3 Score=30.70 Aligned_cols=45 Identities=13% Similarity=0.139 Sum_probs=33.0
Q ss_pred HHHHHHHh--CCC-HHHHhcCCHHHHHHhhccchhhcchhHHHHHHHHHH
Q 024157 214 HIFREVFV--GFD-PIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENAR 260 (271)
Q Consensus 214 e~fReAF~--~FD-p~~VA~~~E~~Ie~L~~d~~IIRNr~KIrAII~NAr 260 (271)
+.|.+.|. +|| .+.|..++++|+.+|... .+-||.||...|..-+
T Consensus 28 ~qY~~~F~~~g~~~~~~l~~lt~~DL~~lGI~--~~GHrkkIl~ai~~L~ 75 (91)
T 1x40_A 28 EQYLLHFHESGFTTVKDCAAINDSLLQKIGIS--PTGHRRRILKQLQIIL 75 (91)
T ss_dssp GGGHHHHHHHTCCBSGGGGGCCHHHHHHHTCC--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHhhcCHHHHHHCCCC--CHhHHHHHHHHHHHHH
Confidence 44666664 574 789999999999987553 2469999987776644
No 35
>3h8m_A Ephrin type-A receptor 7; SAM domain, kinase,structural genomics, structural genomics consortium, SGC, alternative splicing, ATP-binding; 2.10A {Homo sapiens}
Probab=69.12 E-value=7.7 Score=29.52 Aligned_cols=45 Identities=16% Similarity=0.388 Sum_probs=33.0
Q ss_pred HHHHHHH--hCCC-HHHHhcCCHHHHHHhhccchhhcchhHHHHHHHHHH
Q 024157 214 HIFREVF--VGFD-PIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENAR 260 (271)
Q Consensus 214 e~fReAF--~~FD-p~~VA~~~E~~Ie~L~~d~~IIRNr~KIrAII~NAr 260 (271)
+.|.+.| .+|| .+.|..++++|+.+|.... +-+|.||-..|..-+
T Consensus 38 ~qY~~~F~~~g~d~~e~l~~lt~~DL~~lGIt~--~GHRkkIL~ai~~Lr 85 (90)
T 3h8m_A 38 ERYKDNFTAAGYNSLESVARMTIEDVMSLGITL--VGHQKKIMSSIQTMR 85 (90)
T ss_dssp GGGHHHHHHTTCCSHHHHHTCCHHHHHHTTCCC--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHhhCCHHHHHHCCCCC--HHHHHHHHHHHHHHH
Confidence 4456666 5688 8999999999999885532 358889887775543
No 36
>2e8n_A Ephrin type-A receptor 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.85 E-value=5.3 Score=29.83 Aligned_cols=46 Identities=11% Similarity=0.205 Sum_probs=34.8
Q ss_pred HHHHHHHh--CCC-HHHHhcCCHHHHHHhhccchhhcchhHHHHHHHHHHH
Q 024157 214 HIFREVFV--GFD-PIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQ 261 (271)
Q Consensus 214 e~fReAF~--~FD-p~~VA~~~E~~Ie~L~~d~~IIRNr~KIrAII~NAra 261 (271)
+.|.+.|. +|| .+.|..|+++++.+|.... +-||.||...|..-+.
T Consensus 25 ~~Y~~~F~~~~~~~~~~l~~lt~~dL~~lGI~~--~GhRkkIl~ai~~l~~ 73 (88)
T 2e8n_A 25 QQYTEHFMAAGYTAIEKVVQMTNDDVKRIGVRL--PGHQKRIAYSLLGLKD 73 (88)
T ss_dssp GGGHHHHHHHTCSSHHHHTTSCTTHHHHTTCCS--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHhCCHHHHHHCCCCC--hhHHHHHHHHHHHHHH
Confidence 45666664 588 8999999999999886542 4599999887776554
No 37
>3kka_C Ephrin type-A receptor 2; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.40A {Homo sapiens} SCOP: a.60.1.0
Probab=64.29 E-value=9 Score=28.91 Aligned_cols=43 Identities=12% Similarity=0.196 Sum_probs=32.2
Q ss_pred HHHHHHH--hCCC-HHHHhcCCHHHHHHhhccchhhcchhHHHHHHHH
Q 024157 214 HIFREVF--VGFD-PIAVSKLNEKKLLAAGSAASSLLSELKLRAIIEN 258 (271)
Q Consensus 214 e~fReAF--~~FD-p~~VA~~~E~~Ie~L~~d~~IIRNr~KIrAII~N 258 (271)
+.|.+.| .+|| .+.|..++++|+.+|.... +-+|.||-..|..
T Consensus 34 ~qY~~~F~~~g~d~le~l~~lt~~DL~~LGIt~--~GHRkkIL~ai~~ 79 (86)
T 3kka_C 34 QQYTEHFMAAGYTAIEKVVQMTNDDIKRIGVRL--PGHQKRIAYSLLG 79 (86)
T ss_dssp GGGHHHHHHTTCCSHHHHHTCCHHHHHHTTCCC--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHhCCHHHHHHCCCCC--HHHHHHHHHHHHH
Confidence 4566666 4688 8999999999999885532 3588898777654
No 38
>3hil_A Ephrin type-A receptor 1; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.00A {Homo sapiens} PDB: 3kka_A
Probab=61.98 E-value=6.3 Score=29.54 Aligned_cols=42 Identities=19% Similarity=0.216 Sum_probs=30.7
Q ss_pred HHHHHHH--hCCC-HHHHhcCCHHHHHHhhccchhhcchhHHHHHHH
Q 024157 214 HIFREVF--VGFD-PIAVSKLNEKKLLAAGSAASSLLSELKLRAIIE 257 (271)
Q Consensus 214 e~fReAF--~~FD-p~~VA~~~E~~Ie~L~~d~~IIRNr~KIrAII~ 257 (271)
+.|.+.| .+|| .+.|..++++|+.+|.... +-+|.||-..|.
T Consensus 36 ~qY~~~F~~~g~~s~e~l~~lt~~DL~~lGIt~--~GHRkkIL~aiq 80 (82)
T 3hil_A 36 KRYILHFHSAGLDTMECVLELTAEDLTQMGITL--PGHQKRILCSIQ 80 (82)
T ss_dssp GGGHHHHHHTTCCSGGGGTTCCHHHHHHTTCCC--HHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHhcCCHHHHHHCCCCC--HHHHHHHHHHHH
Confidence 4455666 4688 8899999999999885542 358888876554
No 39
>2kg5_A ARF-GAP, RHO-GAP domain, ANK repeat and PH domain-containing protein 3; SAM domain, helix bundle, cell membrane, cell projection, cytoplasm; NMR {Homo sapiens}
Probab=61.73 E-value=9 Score=29.68 Aligned_cols=43 Identities=14% Similarity=0.262 Sum_probs=32.2
Q ss_pred HHHHHHH--hCCC-HHHHhcCCHHHHHHhhccchhhcchhHHHHHHHH
Q 024157 214 HIFREVF--VGFD-PIAVSKLNEKKLLAAGSAASSLLSELKLRAIIEN 258 (271)
Q Consensus 214 e~fReAF--~~FD-p~~VA~~~E~~Ie~L~~d~~IIRNr~KIrAII~N 258 (271)
+.|.+.| .+|| .+.|..++++|+.+|... .+-+|.||...|..
T Consensus 39 ~qY~~~F~~~gid~~~~L~~Lt~eDLkeLGIt--~~GhRkkIL~aI~~ 84 (100)
T 2kg5_A 39 EQYADTFRRHGLATAGAARGLGHEELKQLGIS--ATGHRKRILRLLQT 84 (100)
T ss_dssp GGGHHHHHHTTCCBHHHHTTCCHHHHHHHTCC--CHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCChHHHHHhcCHHHHHHCCCC--ChhHHHHHHHHHHH
Confidence 4566666 4788 899999999999998654 24588898766643
No 40
>1oxj_A RNA-binding protein smaug; SAM domain, PHAT domain; 1.80A {Drosophila melanogaster} SCOP: a.60.1.2 a.118.1.13
Probab=60.89 E-value=10 Score=32.88 Aligned_cols=44 Identities=20% Similarity=0.249 Sum_probs=37.4
Q ss_pred HHHHHHHhCCCHHHHhcCCHHHHHHhhccchhhcchhHHHHHHHHHH
Q 024157 214 HIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENAR 260 (271)
Q Consensus 214 e~fReAF~~FDp~~VA~~~E~~Ie~L~~d~~IIRNr~KIrAII~NAr 260 (271)
+-|.+.|.+.+.+.+..+||++++.+.... -+|.||...|+.-+
T Consensus 20 hKY~~~F~~~~~e~~~~LTdedL~~~GVT~---GARrKIL~aIq~Lr 63 (173)
T 1oxj_A 20 HKYIELFKNMTYEEMLLITEDFLQSVGVTK---GASHKLALCIDKLK 63 (173)
T ss_dssp GGGGGGGTTCCHHHHTTCCHHHHHHTTCCH---HHHHHHHHHHHHHH
T ss_pred chhHHHHccCCHHHHHhcCHHHHHHCCCch---HHHHHHHHHHHHHH
Confidence 457889999999999999999999987773 68999888776544
No 41
>2ean_A Connector enhancer of kinase suppressor of RAS 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.40 E-value=22 Score=25.77 Aligned_cols=39 Identities=5% Similarity=0.019 Sum_probs=30.4
Q ss_pred hCCCHHHHhcCCHHHHHHhhccchhhcchhHHHHHHHHHHH
Q 024157 221 VGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQ 261 (271)
Q Consensus 221 ~~FDp~~VA~~~E~~Ie~L~~d~~IIRNr~KIrAII~NAra 261 (271)
+++|-+.+..++++++.+|... -+-+|.||...|..-+.
T Consensus 37 ~~I~G~~Ll~Lt~~dL~~LGI~--~~ghr~~il~~I~~L~~ 75 (83)
T 2ean_A 37 EKISGDQLLRITHQELEDLGVS--RIGHQELILEAVDLLCA 75 (83)
T ss_dssp HTCCHHHHTTCCHHHHHHHTCC--CSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHhhCCHHHHHHhCCC--CHHHHHHHHHHHHHHHH
Confidence 5688899999999999987553 24688998877776554
No 42
>3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling protein; 2.40A {Homo sapiens} PDB: 3sen_A
Probab=52.18 E-value=25 Score=28.67 Aligned_cols=47 Identities=15% Similarity=0.233 Sum_probs=33.6
Q ss_pred HHHHHHH--hCCC-HHHHhcCCHHHHHHhhccchhhcchhHHHHHHHHHHHH
Q 024157 214 HIFREVF--VGFD-PIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQI 262 (271)
Q Consensus 214 e~fReAF--~~FD-p~~VA~~~E~~Ie~L~~d~~IIRNr~KIrAII~NArai 262 (271)
+.|.+.| .+|| .+.|..++++++..|.... +-+|.||-..|..-+.+
T Consensus 92 ~qY~~~F~~~g~d~~~~l~~lt~~dL~~lGI~~--~gHr~kIl~ai~~l~~~ 141 (149)
T 3sei_A 92 AQYYKVLVDNGYENIDFITDITWEDLQEIGITK--LGHQKKLMLAVRKLAEL 141 (149)
T ss_dssp GGGHHHHHHTTCCSHHHHTTCCHHHHHHHTCCC--HHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHCCCchHHHHhhCCHHHHHHCCCCC--HHHHHHHHHHHHHHHHH
Confidence 3456666 4788 8999999999998875532 35888887777544443
No 43
>3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling protein; 2.40A {Homo sapiens} PDB: 3sen_A
Probab=51.69 E-value=16 Score=29.77 Aligned_cols=43 Identities=23% Similarity=0.402 Sum_probs=32.7
Q ss_pred HHHHHHHh--CCCHHHHhcCCHHHHHHhhccchhhcchhHHHHHHHH
Q 024157 214 HIFREVFV--GFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIEN 258 (271)
Q Consensus 214 e~fReAF~--~FDp~~VA~~~E~~Ie~L~~d~~IIRNr~KIrAII~N 258 (271)
+.|.+.|. +||.+.+..++++|+.+|.... .-+|.||...|..
T Consensus 23 ~~Y~~~F~~~g~d~~~l~~lt~~DL~~lGIt~--~gHrkkil~ai~~ 67 (149)
T 3sei_A 23 QLYAPNFISAGYDLPTISRMTPEDLTAIGVTK--PGHRKKIAAEISG 67 (149)
T ss_dssp GGGHHHHHHTTCCHHHHTTCCHHHHHHTTCCS--HHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHccCCHHHHHHcCCCC--HHHHHHHHHHHHH
Confidence 45666665 8999999999999999886542 3588898776654
No 44
>3bs5_B Connector enhancer of kinase suppressor of RAS 2; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Homo sapiens}
Probab=51.39 E-value=30 Score=24.78 Aligned_cols=44 Identities=7% Similarity=0.080 Sum_probs=32.1
Q ss_pred HHHHH--hCCCHHHHhcCCHHHHHHhhccchhhcchhHHHHHHHHHHH
Q 024157 216 FREVF--VGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQ 261 (271)
Q Consensus 216 fReAF--~~FDp~~VA~~~E~~Ie~L~~d~~IIRNr~KIrAII~NAra 261 (271)
|.+.| +++|-..+..++++++.+|.... +-+|.||...|..-+.
T Consensus 26 Y~~~F~~~~i~G~~Ll~L~~~dL~~lGI~~--~ghr~~il~~I~~L~~ 71 (80)
T 3bs5_B 26 YIKNFEREKISGDQLLRITHQELEDLGVSR--IGHQELILEAVDLLCA 71 (80)
T ss_dssp GHHHHHHHTCCHHHHHTCCHHHHHHTTCCC--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHCCHHHHHHcCCCC--HHHHHHHHHHHHHHHH
Confidence 44444 67889999999999998875532 4588888877766543
No 45
>2khq_A Integrase; all-alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus saprophyticus subsp}
Probab=47.16 E-value=69 Score=22.26 Aligned_cols=42 Identities=5% Similarity=0.030 Sum_probs=29.5
Q ss_pred hccCCHHHHHHhHHHHHHHHhCCCHHHHhcCCHHHHHHhhcc
Q 024157 201 LSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSA 242 (271)
Q Consensus 201 QAGLSW~tILkKRe~fReAF~~FDp~~VA~~~E~~Ie~L~~d 242 (271)
+.+++=.|+-..+..++..+..|.-..|..++..+|.+.+..
T Consensus 17 ~~~~~~~T~~~y~~~~~~~~~~~g~~~l~~it~~~i~~~~~~ 58 (110)
T 2khq_A 17 LPHVSESTKRHYESAYKHIKDHFRHKLLKDIKRTEYQKFLNE 58 (110)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHCSSCBGGGCCHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHHHHHCcCCHhhCCHHHHHHHHHH
Confidence 357888888777777766444454456788999999876543
No 46
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=46.74 E-value=8.2 Score=28.74 Aligned_cols=44 Identities=25% Similarity=0.294 Sum_probs=34.7
Q ss_pred HHHHHHHhCCCHHHHhcCCHHHHHHhhccchhhcchhHHHHHHH
Q 024157 214 HIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIE 257 (271)
Q Consensus 214 e~fReAF~~FDp~~VA~~~E~~Ie~L~~d~~IIRNr~KIrAII~ 257 (271)
+.++++|.-||.+.=-.++-+++..++..-++-.+...|..++.
T Consensus 36 ~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~ 79 (100)
T 2lv7_A 36 EEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQ 79 (100)
T ss_dssp HHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 45789999999998888999999888876666666666766664
No 47
>2oxo_A Integrase; DNA-binding protein, four-helix bundle, DNA binding protein; 2.00A {Unidentified phage}
Probab=46.16 E-value=63 Score=21.50 Aligned_cols=41 Identities=7% Similarity=0.130 Sum_probs=28.4
Q ss_pred hccCCHHHHHHhHHHHHHHHhCCCHHHHhcCCHHHHHHhhc
Q 024157 201 LSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGS 241 (271)
Q Consensus 201 QAGLSW~tILkKRe~fReAF~~FDp~~VA~~~E~~Ie~L~~ 241 (271)
+.+++=.|+-..+..++..+..|.-..|.+++..+|+..+.
T Consensus 16 ~~~~~~~T~~~y~~~~~~~~~~~g~~~l~~it~~~i~~~~~ 56 (103)
T 2oxo_A 16 SRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLN 56 (103)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHSCSCBGGGCCHHHHHHHHH
T ss_pred ccCCChhHHHHHHHHHHHHHHHHCcCchhhCCHHHHHHHHH
Confidence 46788788777776666544444445678899999987654
No 48
>2qkq_A Ephrin type-B receptor 4; ATP-binding, glycoprotein, kinase, membrane, nucleotide- binding, phosphorylation, repeat, signal, transferase; 2.10A {Homo sapiens}
Probab=45.74 E-value=20 Score=26.16 Aligned_cols=45 Identities=24% Similarity=0.351 Sum_probs=32.9
Q ss_pred HHHHHHHh--CC-CHHHHhcCCHHHHHHhhccchhhcchhHHHHHHHHHH
Q 024157 214 HIFREVFV--GF-DPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENAR 260 (271)
Q Consensus 214 e~fReAF~--~F-Dp~~VA~~~E~~Ie~L~~d~~IIRNr~KIrAII~NAr 260 (271)
+.|.+.|. +| |.+.+..++++++.++... .+-||.||...|..-+
T Consensus 28 ~~Y~~~F~~~~~~~~~~l~~lt~~dL~~lGI~--~~GhrkkIl~ai~~l~ 75 (83)
T 2qkq_A 28 GRYEESFAAAGFGSFELVSQISAEDLLRIGVT--LAGHQKKILASVQHMK 75 (83)
T ss_dssp GGGHHHHHHTTCCSHHHHTTCCHHHHHHHTCC--CHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHcCCCcHHHHhhCCHHHHHHCCCC--CHHHHHHHHHHHHHHH
Confidence 45778885 43 7899999999999997553 2458999877665433
No 49
>2lmr_A ODIN, ankyrin repeat and SAM domain-containing protein; signaling protein; NMR {Homo sapiens}
Probab=45.34 E-value=12 Score=29.09 Aligned_cols=43 Identities=19% Similarity=0.270 Sum_probs=31.9
Q ss_pred HHHHHHHh--CCC-HHHHh--cCCHHHHHHhhccchhhcchhHHHHHHHH
Q 024157 214 HIFREVFV--GFD-PIAVS--KLNEKKLLAAGSAASSLLSELKLRAIIEN 258 (271)
Q Consensus 214 e~fReAF~--~FD-p~~VA--~~~E~~Ie~L~~d~~IIRNr~KIrAII~N 258 (271)
+.|.+.|. +|| .+.|+ .++++++.+|... .+-+|.||...|..
T Consensus 42 ~qY~~~F~~~g~d~~e~l~~~~Lt~eDL~eLGIt--~~GHRkkIL~aI~~ 89 (101)
T 2lmr_A 42 QQYESKLLLNGFDDVHFLGSNVMEEQDLRDIGIS--DPQHRRKLLQAARS 89 (101)
T ss_dssp GGGHHHHHHTTCCCTTSTTTSCCCHHHHHHHTCC--CHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCChHHHHhhccCCHHHHHHCCCC--CHHHHHHHHHHHHH
Confidence 66777775 466 66888 8999999988654 24589998766654
No 50
>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction, protein binding; NMR {Rattus norvegicus}
Probab=43.59 E-value=49 Score=23.24 Aligned_cols=45 Identities=16% Similarity=0.204 Sum_probs=32.0
Q ss_pred HHHHHHH--hCCCHHHHhcCCHHHHHHhhccchhhcchhHHHHHHHHHH
Q 024157 214 HIFREVF--VGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENAR 260 (271)
Q Consensus 214 e~fReAF--~~FDp~~VA~~~E~~Ie~L~~d~~IIRNr~KIrAII~NAr 260 (271)
+.|.+.| +++|-..+..++++++..|... .+-+|.||...|..-+
T Consensus 22 ~~y~~~F~~~~i~g~~Ll~l~~~dL~~lGI~--~~g~r~kil~~i~~L~ 68 (74)
T 2gle_A 22 DQYVSEFSAQNISGEQLLQLDGNKLKALGMT--SSQDRALVKKKLKEMK 68 (74)
T ss_dssp HHHHHHHTTTTCCHHHHHTCCHHHHHTTTCC--CHHHHHHHHHHHHSHH
T ss_pred HHHHHHHHHcCCCHHHHhhCCHHHHHHcCCC--CHHHHHHHHHHHHHHH
Confidence 4567777 4578899999999998876543 1457888876665543
No 51
>1z19_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 2.80A {Enterobacteria phage lambda} PDB: 1p7d_A*
Probab=42.68 E-value=1.2e+02 Score=24.44 Aligned_cols=43 Identities=9% Similarity=0.146 Sum_probs=32.1
Q ss_pred HhccCCHHHHHHhHHHHHHHHhCCCHHHHhcCCHHHHHHhhcc
Q 024157 200 ALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSA 242 (271)
Q Consensus 200 fQAGLSW~tILkKRe~fReAF~~FDp~~VA~~~E~~Ie~L~~d 242 (271)
...|++=.|+-..+..++..+..|.-..|..++.++|+..+..
T Consensus 15 ~~~~~~~~T~~~y~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~ 57 (283)
T 1z19_A 15 ASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNG 57 (283)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHHHSCSCBGGGCCHHHHHHHHHH
T ss_pred hhcccchhHHHHHHHHHHHHHHHhccCcHHhCCHHHHHHHHHH
Confidence 3578999998888877776555555556788999999876543
No 52
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8 PDB: 1k95_A 1f4q_A 1f4o_A
Probab=40.87 E-value=21 Score=27.00 Aligned_cols=49 Identities=18% Similarity=0.227 Sum_probs=34.0
Q ss_pred HHHhHHHHHHHHhCCCHHHHhcCCHHHHHHhhccchhhcchhHHHHHHH
Q 024157 209 ILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIE 257 (271)
Q Consensus 209 ILkKRe~fReAF~~FDp~~VA~~~E~~Ie~L~~d~~IIRNr~KIrAII~ 257 (271)
++.+.+.++++|..||.+.=-.++-+++..++..-+.-.+...+..++.
T Consensus 65 ~~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~ 113 (165)
T 1k94_A 65 LWAALNAWKENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVK 113 (165)
T ss_dssp HHHHHHHHHHHHHHHCTTCCSBCCHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCceECHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 4445678999999999887777888888777665444445555555554
No 53
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein, solution structure, backbone dynamic, structural genomics; NMR {Homo sapiens}
Probab=39.82 E-value=15 Score=23.71 Aligned_cols=44 Identities=20% Similarity=0.206 Sum_probs=30.4
Q ss_pred HHHHHHHHhCCCHHHHhcCCHHHHHHhhccchhhcchhHHHHHH
Q 024157 213 RHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAII 256 (271)
Q Consensus 213 Re~fReAF~~FDp~~VA~~~E~~Ie~L~~d~~IIRNr~KIrAII 256 (271)
.+.++++|..||.+.=-.++.+++..++..-+.-.+...|..++
T Consensus 5 ~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~ 48 (71)
T 2b1u_A 5 LEDLQVAFRAFDQDGDGHITVDELRRAMAGLGQPLPQEELDAMI 48 (71)
T ss_dssp HHHHHHHHTTSCCSSSSEEEHHHHHHHGGGTTCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 46789999999988777788888888776554434444444443
No 54
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=38.76 E-value=13 Score=28.27 Aligned_cols=40 Identities=13% Similarity=0.195 Sum_probs=24.5
Q ss_pred ccCCHHHHHHhHHHHHHHHhCCCHHHHhcCCHHHHHHhhcc
Q 024157 202 SELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSA 242 (271)
Q Consensus 202 AGLSW~tILkKRe~fReAF~~FDp~~VA~~~E~~Ie~L~~d 242 (271)
.|..|..--..+..|+++|.-||. .=-.++-+++..++..
T Consensus 3 ~~~~w~ls~~e~~~~~~~F~~~D~-~dG~Is~~el~~~l~~ 42 (106)
T 1eh2_A 3 WGSPWAVKPEDKAKYDAIFDSLSP-VNGFLSGDKVKPVLLN 42 (106)
T ss_dssp ---CCSSCHHHHHHHHHHHTTSCC-SSSCCBHHHHHHHHHT
T ss_pred cCCCCCCCHHHHHHHHHHHHHhCC-CCCeEcHHHHHHHHHH
Confidence 355566545667889999999997 4334555555555443
No 55
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=37.92 E-value=16 Score=24.67 Aligned_cols=45 Identities=22% Similarity=0.275 Sum_probs=31.3
Q ss_pred HHHHHHHHhCCCHHHHhcCCHHHHHHhhccchhhcchhHHHHHHH
Q 024157 213 RHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIE 257 (271)
Q Consensus 213 Re~fReAF~~FDp~~VA~~~E~~Ie~L~~d~~IIRNr~KIrAII~ 257 (271)
...++++|..||.+.=-.++-+++..++..-++-.+...|..++.
T Consensus 13 ~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~ 57 (85)
T 2ktg_A 13 QQEYKEAFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVK 57 (85)
T ss_dssp HHHHHHHHHHTCTTCCSEEEHHHHHHHHHTTSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 467899999999877666777888777665554445555555554
No 56
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Probab=37.15 E-value=14 Score=26.36 Aligned_cols=44 Identities=16% Similarity=0.134 Sum_probs=27.9
Q ss_pred HHHHHHHhCCCHHHHhcCCHHHHHHhhccchhhcchhHHHHHHH
Q 024157 214 HIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIE 257 (271)
Q Consensus 214 e~fReAF~~FDp~~VA~~~E~~Ie~L~~d~~IIRNr~KIrAII~ 257 (271)
+.++++|..||.+.=-.++.+++..++..-+.-.....|..++.
T Consensus 29 ~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~e~~~l~~ 72 (94)
T 2kz2_A 29 EEIREAFRVEDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIR 72 (94)
T ss_dssp HHHHHHHHHHCTTCCSCBCHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCcCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 55778888888776666777777776655444444555555443
No 57
>1kdx_B CREB; complex (transcription activator/CO-activator), protein- protein interaction, phosphoserine recognition; HET: SEP; NMR {Rattus norvegicus}
Probab=36.57 E-value=5 Score=25.52 Aligned_cols=18 Identities=28% Similarity=0.562 Sum_probs=15.2
Q ss_pred HHHHHhHHHHHHHHhCCC
Q 024157 207 PAILSKRHIFREVFVGFD 224 (271)
Q Consensus 207 ~tILkKRe~fReAF~~FD 224 (271)
..||.+|+.||..|.+|-
T Consensus 7 r~iL~rrpSYrkIlndls 24 (28)
T 1kdx_B 7 REILSRRPSYRKILNDLS 24 (28)
T ss_dssp HHHHTTSTHHHHHHHHHH
T ss_pred hhhhhcCchHHHHHHhhc
Confidence 458999999999998763
No 58
>2f3n_A SH3 and multiple ankyrin repeat domains 3; postsynaptic density, SAM domain, shank, scaffolding protein, structural protein; 2.10A {Rattus norvegicus} SCOP: a.60.1.2 PDB: 2f44_A
Probab=35.33 E-value=33 Score=24.58 Aligned_cols=45 Identities=9% Similarity=0.179 Sum_probs=31.3
Q ss_pred HHHHHH--hCCCHHHHhcCCHHHHHHhhccchhhcchhHHHHHHHHHHH
Q 024157 215 IFREVF--VGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQ 261 (271)
Q Consensus 215 ~fReAF--~~FDp~~VA~~~E~~Ie~L~~d~~IIRNr~KIrAII~NAra 261 (271)
.|.+.| .++|-..+..++++++..|... .+-+|.||...|..-+.
T Consensus 21 ~Y~~~F~~~~idg~~Ll~Lt~~dL~~lGI~--~~Ghr~kIl~aI~~l~~ 67 (76)
T 2f3n_A 21 EHRDRFEDHEIEGAHLPALTKEDFVELGVT--RVGHRENIERALRQLDG 67 (76)
T ss_dssp GGHHHHHHTTCCGGGGGGCCHHHHHHTTCC--CHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHcCCCHHHHccCCHHHHHHcCCC--ChhHHHHHHHHHHHHHH
Confidence 466666 4677789999999999877553 13478888777765443
No 59
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A; EF-hand like, unknown function; 1.60A {Homo sapiens} SCOP: a.39.1.7
Probab=34.94 E-value=20 Score=25.42 Aligned_cols=45 Identities=16% Similarity=0.339 Sum_probs=27.4
Q ss_pred HhHHHHHHHHhCCCHHHHhcCCHHHHHHhhccchhhcchhHHHHH
Q 024157 211 SKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAI 255 (271)
Q Consensus 211 kKRe~fReAF~~FDp~~VA~~~E~~Ie~L~~d~~IIRNr~KIrAI 255 (271)
.....++++|..||.+.=-.++-+++..++..-+.-.+...|..+
T Consensus 21 ~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~e~~~l 65 (105)
T 1wlz_A 21 SHYHAITQEFENFDTMKTNTISREEFRAICNRRVQILTDEQFDRL 65 (105)
T ss_dssp HTHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred chHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHH
Confidence 345678899999998766666666666655443333333334333
No 60
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB: 2jc2_A
Probab=34.87 E-value=30 Score=27.20 Aligned_cols=48 Identities=19% Similarity=0.241 Sum_probs=30.9
Q ss_pred HHHhHHHHHHHHhCCCHHHHhcCCHHHHHHhhccchhhcchhHHHHHH
Q 024157 209 ILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAII 256 (271)
Q Consensus 209 ILkKRe~fReAF~~FDp~~VA~~~E~~Ie~L~~d~~IIRNr~KIrAII 256 (271)
++...+.++++|..||.+.=-.++.+++..++..-+.-.....|..++
T Consensus 98 ~~~~~~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~l~ 145 (198)
T 1juo_A 98 LWAVLNGWRQHFISFDTDRSGTVDPQELQKALTTMGFRLSPQAVNSIA 145 (198)
T ss_dssp HHHHHHHHHHHHHTTCTTCCSEECHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 444567899999999987666677777776665443333444444444
No 61
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Probab=33.69 E-value=19 Score=24.54 Aligned_cols=39 Identities=10% Similarity=0.026 Sum_probs=25.8
Q ss_pred HHHHHHHHhCCCHHHHhcCCHHHHHHhhccchhhcchhH
Q 024157 213 RHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELK 251 (271)
Q Consensus 213 Re~fReAF~~FDp~~VA~~~E~~Ie~L~~d~~IIRNr~K 251 (271)
...++++|.-||.+.=-.++-+++..++..-+.-.+...
T Consensus 13 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~ 51 (86)
T 1j7q_A 13 KDECMKIFDIFDRNAENIAPVSDTMDMLTKLGQTYTKRE 51 (86)
T ss_dssp HHHHHHHHHHHSTTTTSCBCHHHHHHHHHHTSCCCSHHH
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHcCCCCHHH
Confidence 356788888888877667777887776655443333333
No 62
>1a0p_A Site-specific recombinase XERD; DNA binding, DNA recombination; 2.50A {Escherichia coli} SCOP: a.60.9.1 d.163.1.1
Probab=33.27 E-value=1.1e+02 Score=24.58 Aligned_cols=56 Identities=11% Similarity=-0.031 Sum_probs=36.3
Q ss_pred ChHHHHHHHHHHHH-hccCCHHHHHHhHHHHHHHHhCCCHH--HHhcCCHHHHHHhhcc
Q 024157 187 DDKKLFELLVLSGA-LSELTWPAILSKRHIFREVFVGFDPI--AVSKLNEKKLLAAGSA 242 (271)
Q Consensus 187 DDr~LFElL~LEgf-QAGLSW~tILkKRe~fReAF~~FDp~--~VA~~~E~~Ie~L~~d 242 (271)
+|..|++....... ..|++=.|+-.-+..++..+.-+... .+..++.++|...+..
T Consensus 1 ~d~~~~~~~~~~~~~~~~~s~~T~~~y~~~l~~~~~~~~~~~~~~~~i~~~~i~~~~~~ 59 (290)
T 1a0p_A 1 QDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAE 59 (290)
T ss_dssp CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHTSCCTTTCCHHHHHHHHHS
T ss_pred CchHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhcCCChhhCCHHHHHHHHHH
Confidence 34555564444333 57899999888777776544333322 5788999999886653
No 63
>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin crosslinking, ionized calciu binding adapter molecule 2, metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B 2vtg_A
Probab=32.04 E-value=34 Score=26.33 Aligned_cols=49 Identities=16% Similarity=0.224 Sum_probs=35.7
Q ss_pred HHhHHHHHHHHhCCCHHHHhcCCHHHHHHhhccchhhcchhHHHHHHHH
Q 024157 210 LSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIEN 258 (271)
Q Consensus 210 LkKRe~fReAF~~FDp~~VA~~~E~~Ie~L~~d~~IIRNr~KIrAII~N 258 (271)
-...+.++++|..||.+.=-.++-+++..++..-+.-.+...|..++..
T Consensus 46 ~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~e~~~l~~~ 94 (150)
T 2jjz_A 46 PEKLTAFKEKYMEFDLNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISE 94 (150)
T ss_dssp HHHHHHHHHHHTTSCCCTTSSBCHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCcCcCCHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3556789999999998877778888888777655544555566666554
No 64
>2kiv_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, tandem, signaling protein, alternative splicing, ANK repeat; NMR {Homo sapiens}
Probab=31.71 E-value=30 Score=27.88 Aligned_cols=43 Identities=19% Similarity=0.276 Sum_probs=31.2
Q ss_pred HHHHHHH--hCCCH-HHHh--cCCHHHHHHhhccchhhcchhHHHHHHHH
Q 024157 214 HIFREVF--VGFDP-IAVS--KLNEKKLLAAGSAASSLLSELKLRAIIEN 258 (271)
Q Consensus 214 e~fReAF--~~FDp-~~VA--~~~E~~Ie~L~~d~~IIRNr~KIrAII~N 258 (271)
+.|.+.| .+||- +.|+ .|+++|+..+.... .-+|.||...|.+
T Consensus 27 ~~Y~~~F~~~g~d~~~~l~~~~lt~~DL~~lGI~~--~ghRkkil~ai~~ 74 (148)
T 2kiv_A 27 PQYENHLMANGFDNVQAMGSNVMEDQDLLEIGILN--SGHRQRILQAIQL 74 (148)
T ss_dssp TTSHHHHHHTTTTBGGGGTSSCCCHHHHHHHCCSS--TTSHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHhhhccCCHHHHHHCCCCC--HHHHHHHHHHHHH
Confidence 3566666 56776 5676 99999999876542 3589999877765
No 65
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1; calmodulin-like domain, EF calcium binding protein, transferase; 2.00A {Arabidopsis thaliana}
Probab=31.51 E-value=54 Score=24.31 Aligned_cols=61 Identities=18% Similarity=0.187 Sum_probs=39.6
Q ss_pred HHHHHHHHHhccCCHHHHHHhHHHHHHHHhCCCHHHHhcCCHHHHHHhhccchhhcchhHHHHHH
Q 024157 192 FELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAII 256 (271)
Q Consensus 192 FElL~LEgfQAGLSW~tILkKRe~fReAF~~FDp~~VA~~~E~~Ie~L~~d~~IIRNr~KIrAII 256 (271)
|..+++..+...|+...+ ..++++|..||.+.=-.++-+++..++..-+.-.+...|..++
T Consensus 9 ~~~~~~~~~~~~l~~~~~----~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~ 69 (166)
T 2aao_A 9 FKKMALRVIAESLSEEEI----AGLKEMFNMIDADKSGQITFEELKAGLKRVGANLKESEILDLM 69 (166)
T ss_dssp HHHHHHHHHHHHSCHHHH----HHHHHHHHHHCTTCCSSBCHHHHHHHGGGGTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHH----HHHHHHHHHhCCCCCCeEeHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 455677777777887654 4578888888887666777888877666544333444444443
No 66
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5
Probab=31.42 E-value=14 Score=23.55 Aligned_cols=42 Identities=21% Similarity=0.244 Sum_probs=26.6
Q ss_pred HHHHHhCCCHHHHhcCCHHHHHHhhccchhhcchhHHHHHHH
Q 024157 216 FREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIE 257 (271)
Q Consensus 216 fReAF~~FDp~~VA~~~E~~Ie~L~~d~~IIRNr~KIrAII~ 257 (271)
++++|..||.+.=-.++-+++..++..-+.-.+...|..++.
T Consensus 3 l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~ 44 (67)
T 1tiz_A 3 AKRVFEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFE 44 (67)
T ss_dssp HHHHHHHHCTTSSSCEEHHHHHHHHHHTCTTSCHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 577888888777666777777776665444344445544443
No 67
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=30.78 E-value=11 Score=27.15 Aligned_cols=31 Identities=10% Similarity=0.051 Sum_probs=21.5
Q ss_pred HhHHHHHHHHhCCCHHHHhcCCHHHHHHhhc
Q 024157 211 SKRHIFREVFVGFDPIAVSKLNEKKLLAAGS 241 (271)
Q Consensus 211 kKRe~fReAF~~FDp~~VA~~~E~~Ie~L~~ 241 (271)
..+..|+++|.-||.+.=-.++-+++..++.
T Consensus 6 ~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~ 36 (92)
T 1fi6_A 6 EQRQYYVNQFKTIQPDLNGFIPGSAAKEFFT 36 (92)
T ss_dssp HHHHHHHHHHTTTCCSTTCEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 3457799999999986555556666665554
No 68
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=30.22 E-value=14 Score=24.35 Aligned_cols=44 Identities=16% Similarity=0.191 Sum_probs=28.6
Q ss_pred HHHHHHHHhCCCHHHHhcCCHHHHHHhhccchhhcchhHHHHHH
Q 024157 213 RHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAII 256 (271)
Q Consensus 213 Re~fReAF~~FDp~~VA~~~E~~Ie~L~~d~~IIRNr~KIrAII 256 (271)
...++++|..||...=-.++-+++..++..-++-.+...|..++
T Consensus 6 ~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~ 49 (77)
T 2joj_A 6 KQEIKEAFDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELM 49 (77)
T ss_dssp HHHHHHHHHHHCCSSSSEEEHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCCcHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 46688889888887666677777777665544434444444444
No 69
>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein; 1.90A {Homo sapiens}
Probab=30.20 E-value=30 Score=24.86 Aligned_cols=47 Identities=21% Similarity=0.233 Sum_probs=32.6
Q ss_pred HhHHHHHHHHhCCCHHHHhcCCHHHHHHhhccchhhcchhHHHHHHH
Q 024157 211 SKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIE 257 (271)
Q Consensus 211 kKRe~fReAF~~FDp~~VA~~~E~~Ie~L~~d~~IIRNr~KIrAII~ 257 (271)
.....++++|..||.+.=-.++-+++..++..-+.-.+...|..++.
T Consensus 29 ~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~l~~ 75 (107)
T 2d58_A 29 SKLEGFKEKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKKLIG 75 (107)
T ss_dssp HHHHHHHHHHTTSCCCTTSCEEHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 34567899999999887677778888777665444445555555554
No 70
>2jq6_A EH domain-containing protein 1; metal binding protein; NMR {Homo sapiens} PDB: 2kff_A 2kfg_A 2kfh_A 2ksp_A
Probab=29.35 E-value=13 Score=30.20 Aligned_cols=36 Identities=11% Similarity=0.222 Sum_probs=20.1
Q ss_pred CCHHHHHHhHHHHHHHHhCCCHHHHhcCCHHHHHHhhc
Q 024157 204 LTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGS 241 (271)
Q Consensus 204 LSW~tILkKRe~fReAF~~FDp~~VA~~~E~~Ie~L~~ 241 (271)
..|.+ -..++.|+++|.-|| +.=-.++-+++..+|.
T Consensus 42 ~~W~~-~~e~~~l~~~F~~fD-d~dG~Is~~El~~~l~ 77 (139)
T 2jq6_A 42 VEWVV-GKDKPTYDEIFYTLS-PVNGKITGANAKKEMV 77 (139)
T ss_dssp CCCGG-GGTHHHHHHHHHHSC-CSSSEEEHHHHHHHHH
T ss_pred CCCCC-hHHHHHHHHHHHHhC-CCCCeECHHHHHHHHH
Confidence 44553 345566778888887 4333344455544443
No 71
>3bq7_A Diacylglycerol kinase delta; SAM domain, polymerization domain, alternative splicing, cytoplasm, membrane, metal-binding, phorbol-ester binding; 2.90A {Homo sapiens}
Probab=29.20 E-value=59 Score=23.50 Aligned_cols=44 Identities=11% Similarity=0.230 Sum_probs=32.2
Q ss_pred HHHHH--hCCCHHHHhcCCHHHHHHhhccchhhcchhHHHHHHHHHHH
Q 024157 216 FREVF--VGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQ 261 (271)
Q Consensus 216 fReAF--~~FDp~~VA~~~E~~Ie~L~~d~~IIRNr~KIrAII~NAra 261 (271)
|.+.| .++|-..+..++++++.+|.... +-+|.||...|..-+.
T Consensus 27 Y~~~F~~~~idg~~Ll~Lt~~dL~~lGI~~--~ghr~kIl~aI~~L~~ 72 (81)
T 3bq7_A 27 YKDIFTRHDIRGSGLLHLERRDLKDLGVTK--VGHMKRILCGIKELSR 72 (81)
T ss_dssp GHHHHHHTTCCHHHHTTCCHHHHHHTTCCC--HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCHHHHCcCCHHHHhHcCCCC--HHHHHHHHHHHHHHHH
Confidence 55566 45788899999999999875432 4578898877766544
No 72
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A 2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A 1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Probab=28.88 E-value=39 Score=23.80 Aligned_cols=45 Identities=13% Similarity=0.110 Sum_probs=33.0
Q ss_pred HHHHHHHHhCCCHHHHhcCCHHHHHHhhccc---hhhcchhHHHHHHH
Q 024157 213 RHIFREVFVGFDPIAVSKLNEKKLLAAGSAA---SSLLSELKLRAIIE 257 (271)
Q Consensus 213 Re~fReAF~~FDp~~VA~~~E~~Ie~L~~d~---~IIRNr~KIrAII~ 257 (271)
.+.++++|.-||.+.=-.++-+++..++..- +.-.....|..++.
T Consensus 40 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~ 87 (108)
T 2pvb_A 40 LDDVKKAFYVIDQDKSGFIEEDELKLFLQNFSPSARALTDAETKAFLA 87 (108)
T ss_dssp HHHHHHHHHHHCTTCSSSBCHHHHHTGGGGTCTTSCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCcCCHHHHHHHHHHHhccCCCCCHHHHHHHHH
Confidence 5779999999999887788999998887654 33345555555554
No 73
>2ke7_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, alternative splicing, ANK repeat, cell junction, cell membrane; NMR {Homo sapiens}
Probab=28.57 E-value=65 Score=24.56 Aligned_cols=47 Identities=15% Similarity=0.245 Sum_probs=32.0
Q ss_pred HHHHHHH--hCCCH-HHH--hcCCHHHHHHhhccchhhcchhHHHHHHHHHHHH
Q 024157 214 HIFREVF--VGFDP-IAV--SKLNEKKLLAAGSAASSLLSELKLRAIIENARQI 262 (271)
Q Consensus 214 e~fReAF--~~FDp-~~V--A~~~E~~Ie~L~~d~~IIRNr~KIrAII~NArai 262 (271)
+.|.+.| ++||- +.| ..|+++++.++... .+-||.||...|..-+.+
T Consensus 35 ~qY~~~F~~~gid~~~~l~~~~lt~~DL~~lGI~--~~GhRkkIl~ai~~L~~~ 86 (103)
T 2ke7_A 35 PQYENHLMANGFDNVQFMGSNVMEDQDLLEIGIL--NSGHRQRILQAIQLLPKM 86 (103)
T ss_dssp TTCHHHHHHTTCCCHHHHHTTCCCHHHHHHHTCC--CHHHHHHHHHHHHHSCC-
T ss_pred HHHHHHHHHcCCCcHHHHhcccCCHHHHhHCCCC--CHHHHHHHHHHHHHHHhc
Confidence 4556666 45764 446 69999999988654 246899998777665433
No 74
>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer, X-type four-helix bundle, metal binding protein; NMR {Rattus norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A 2kbm_A 2l0p_A 2jpt_A
Probab=28.14 E-value=25 Score=24.17 Aligned_cols=32 Identities=19% Similarity=0.147 Sum_probs=20.6
Q ss_pred HhHHHHHHHHhCCC-HHHHh-cCCHHHHHHhhcc
Q 024157 211 SKRHIFREVFVGFD-PIAVS-KLNEKKLLAAGSA 242 (271)
Q Consensus 211 kKRe~fReAF~~FD-p~~VA-~~~E~~Ie~L~~d 242 (271)
.....++++|.-|| .+.=- .++-+++..++..
T Consensus 6 ~~~~~l~~~F~~~D~~d~~G~~I~~~el~~~l~~ 39 (93)
T 1k2h_A 6 TAMETLINVFHAHSGKEGDKYKLSKKELKDLLQT 39 (93)
T ss_dssp HHHHHHHHHHHHHHTTSSCCSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccCCCcCccCHHHHHHHHHH
Confidence 44566778888777 45544 6677777666553
No 75
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium binding protein, apoptosis, calcium, endoplasmic reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB: 2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Probab=27.66 E-value=36 Score=25.82 Aligned_cols=48 Identities=19% Similarity=0.158 Sum_probs=29.4
Q ss_pred HHHhHHHHHHHHhCCCHHHHhcCCHHHHHHhhccchhhcchhHHHHHH
Q 024157 209 ILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAII 256 (271)
Q Consensus 209 ILkKRe~fReAF~~FDp~~VA~~~E~~Ie~L~~d~~IIRNr~KIrAII 256 (271)
++...+.++++|..||.+.=-.++.+++..++..-+.-.....+..++
T Consensus 69 ~~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~ 116 (172)
T 2znd_A 69 VWKYITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILI 116 (172)
T ss_dssp HHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 344557789999999987666677777766655433333333344333
No 76
>3bs7_A Protein aveugle; sterIle alpha motif (SAM) domain, cytoplasm, membrane, sensory transduction, vision, signaling protein; 1.90A {Drosophila melanogaster}
Probab=27.09 E-value=1.5e+02 Score=20.81 Aligned_cols=45 Identities=13% Similarity=0.181 Sum_probs=32.3
Q ss_pred HHHHHH--hCCCHHHHhcCCHHHHHHhhccchhhcchhHHHHHHHHHHH
Q 024157 215 IFREVF--VGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQ 261 (271)
Q Consensus 215 ~fReAF--~~FDp~~VA~~~E~~Ie~L~~d~~IIRNr~KIrAII~NAra 261 (271)
.|.+.| ++.|-..+..++++++.+|... .+-+|.||..-|..-|.
T Consensus 24 ~y~~~F~~~~I~G~~Ll~L~~~dL~~lGI~--~~g~r~~il~~I~~Lr~ 70 (78)
T 3bs7_A 24 QYEQLFAQHDITGRALLRITDSSLQRMGVT--DNRDREAIWREIVKQRL 70 (78)
T ss_dssp GGHHHHHHTTCCHHHHTTCCHHHHHHHTCC--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHhhCCHHHHhHcCCC--CHHHHHHHHHHHHHHHh
Confidence 355666 5678899999999999987543 24578888776665443
No 77
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}
Probab=27.04 E-value=28 Score=23.85 Aligned_cols=42 Identities=14% Similarity=0.162 Sum_probs=22.5
Q ss_pred HHHHHHHhCCCHHHHhcCCHHHHHHhhccchhhcchhHHHHH
Q 024157 214 HIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAI 255 (271)
Q Consensus 214 e~fReAF~~FDp~~VA~~~E~~Ie~L~~d~~IIRNr~KIrAI 255 (271)
+.++++|..||.+.=-.++-+++..++..-++-.+...|..+
T Consensus 9 ~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l 50 (92)
T 2kn2_A 9 EELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQM 50 (92)
T ss_dssp HHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCeEcHHHHHHHHHHhCCCCCHHHHHHH
Confidence 456777777776654455566665555443333333334333
No 78
>3lys_A Prophage PI2 protein 01, integrase; helical N-terminal domain, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactococcus lactis}
Probab=27.02 E-value=1.7e+02 Score=20.75 Aligned_cols=68 Identities=4% Similarity=-0.059 Sum_probs=37.7
Q ss_pred cCCHHHHHHhHHHHHHHHhCCCHHHHhcCCHHHHHHhhccchhhcchhHHHHHHHHHHHHHHHHHhcC
Q 024157 203 ELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISKVDFYFH 270 (271)
Q Consensus 203 GLSW~tILkKRe~fReAF~~FDp~~VA~~~E~~Ie~L~~d~~IIRNr~KIrAII~NArailkI~~E~G 270 (271)
+++=.|+-..+..++..+..|.-..|.+++..+|.+++..-.--....-+.-++..-+.+++...+.|
T Consensus 23 ~~~~~T~~~y~~~~~~i~p~~g~~~l~~It~~~i~~~~~~l~~~~s~~t~~~~~~~l~~i~~~Av~~g 90 (112)
T 3lys_A 23 AIDEMTYKGYEQTLKYLKTYMPNVLISEITASSYQRALNKFAETHAKASTKGFHTRVRASIQCLIEEG 90 (112)
T ss_dssp TSCHHHHHHHHHHHHHHHHHSSSCBTTTCCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCHHhCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHCC
Confidence 67767776666666655555544578899999998766531100122223333444444555444444
No 79
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases, like, EF-hand, structural genomics, structural genomics CON SGC, hydrolase; 1.80A {Homo sapiens}
Probab=26.95 E-value=23 Score=28.45 Aligned_cols=48 Identities=15% Similarity=0.134 Sum_probs=29.0
Q ss_pred HHHhHHHHHHHHhCCCHHHHhcCCHHHHHHhhccc----hhhcchhHHHHHHH
Q 024157 209 ILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAA----SSLLSELKLRAIIE 257 (271)
Q Consensus 209 ILkKRe~fReAF~~FDp~~VA~~~E~~Ie~L~~d~----~IIRNr~KIrAII~ 257 (271)
++.+...++++|.-|| +.=-.++-+++..++..- +.-.+...+..++.
T Consensus 71 ~~~~~~~l~~aF~~fD-d~~G~I~~~El~~~l~~l~~~~G~~~~~~~~~~l~~ 122 (174)
T 2i7a_A 71 LWKRLVHYQHVFQKVQ-TSPGVLLSSDLWKAIENTDFLRGIFISRELLHLVTL 122 (174)
T ss_dssp HHHHHHHHHHHHHHHC-SBTTBEEGGGHHHHHHTCGGGTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc-CCCCcCCHHHHHHHHHHhHhccCCCCCHHHHHHHHH
Confidence 3445567899999999 875556666666555443 33334444555443
No 80
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding, phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Probab=26.69 E-value=35 Score=25.88 Aligned_cols=54 Identities=15% Similarity=0.246 Sum_probs=33.8
Q ss_pred CCHHH---HHHhHHHHHHHHhCCCHHHHhcCCHHHHHHhhccchhhcchhHHHHHHH
Q 024157 204 LTWPA---ILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIE 257 (271)
Q Consensus 204 LSW~t---ILkKRe~fReAF~~FDp~~VA~~~E~~Ie~L~~d~~IIRNr~KIrAII~ 257 (271)
++|.. ++...+.++++|..||.+.=-.++.+++..++..-+.-.....+..++.
T Consensus 59 i~~~eF~~~~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~ 115 (167)
T 1gjy_A 59 MGFNEFKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLNPQTVNSIAK 115 (167)
T ss_dssp BCHHHHHHHHHHHHHHHHHHHHHCTTCCSEECHHHHHHHHHTTTCCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 55443 4445578899999999877666777777766654443334444444443
No 81
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A
Probab=26.64 E-value=29 Score=23.86 Aligned_cols=44 Identities=23% Similarity=0.184 Sum_probs=28.6
Q ss_pred HHHHHHHHhCCCHHHHhcCCHHHHHHhhccchhhcchhHHHHHH
Q 024157 213 RHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAII 256 (271)
Q Consensus 213 Re~fReAF~~FDp~~VA~~~E~~Ie~L~~d~~IIRNr~KIrAII 256 (271)
...++++|..||.+.=-.++-+++..++..-++-.+...|..++
T Consensus 19 ~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~ 62 (90)
T 1avs_A 19 IAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAII 62 (90)
T ss_dssp HHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 45688889888887666677777777665544434444555444
No 82
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*
Probab=26.49 E-value=49 Score=23.82 Aligned_cols=44 Identities=14% Similarity=0.091 Sum_probs=29.5
Q ss_pred HHHHHHHHhCCCHHHHhcCCHHHHHHhhccchhhcchhHHHHHH
Q 024157 213 RHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAII 256 (271)
Q Consensus 213 Re~fReAF~~FDp~~VA~~~E~~Ie~L~~d~~IIRNr~KIrAII 256 (271)
...++++|.-||...=-.++-+++..++..-+.-.+...+..++
T Consensus 84 ~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~ 127 (149)
T 2mys_C 84 FEDFVEGLRVFDKEGNGTVMGAELRHVLATLGEKMTEEEVEELM 127 (149)
T ss_pred HHHHHHHHHHhCCCCCceEcHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 36788999999988766777888877766544333444444443
No 83
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=25.72 E-value=11 Score=27.34 Aligned_cols=31 Identities=10% Similarity=0.044 Sum_probs=21.5
Q ss_pred hHHHHHHHHhCCCHHHHhcCCHHHHHHhhcc
Q 024157 212 KRHIFREVFVGFDPIAVSKLNEKKLLAAGSA 242 (271)
Q Consensus 212 KRe~fReAF~~FDp~~VA~~~E~~Ie~L~~d 242 (271)
.++.|+++|.-||.+.=-.++-+++..++..
T Consensus 8 ~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~ 38 (95)
T 1c07_A 8 EKAKYDEIFLKTDKDMDGFVSGLEVREIFLK 38 (95)
T ss_dssp HHHHHHHHHHHHCTTCSSEECHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCCCCcEeHHHHHHHHHH
Confidence 4567888888888776556666666665544
No 84
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP, structural genomics, PSI; 1.95A {Leishmania major} SCOP: a.39.1.8
Probab=25.68 E-value=49 Score=25.93 Aligned_cols=47 Identities=21% Similarity=0.164 Sum_probs=28.9
Q ss_pred HHHhHHHHHHHHhCCCHHHHhcCCHHHHHHhhccchhhcchhHHHHH
Q 024157 209 ILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAI 255 (271)
Q Consensus 209 ILkKRe~fReAF~~FDp~~VA~~~E~~Ie~L~~d~~IIRNr~KIrAI 255 (271)
++...+.++++|..||.+.=-.++.+++..++..-+.-.+...+..+
T Consensus 88 ~~~~~~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~g~~~~~~~~~~~ 134 (191)
T 1y1x_A 88 LHHFILSMREGFRKRDSSGDGRLDSNEVRAALLSSGYQVSEQTFQAL 134 (191)
T ss_dssp HHHHHHHHHHHHHHHCTTSSSCBCHHHHHHHHHTTSCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhCCCCCHHHHHHH
Confidence 34445778999999998766667777776666543333333333333
No 85
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens}
Probab=25.59 E-value=15 Score=27.60 Aligned_cols=31 Identities=19% Similarity=0.210 Sum_probs=20.0
Q ss_pred HhHHHHHHHHhCCCHHHHhcCCHHHHHHhhc
Q 024157 211 SKRHIFREVFVGFDPIAVSKLNEKKLLAAGS 241 (271)
Q Consensus 211 kKRe~fReAF~~FDp~~VA~~~E~~Ie~L~~ 241 (271)
..++.|+++|.-||.+.=-.++-+++..++.
T Consensus 11 ~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~ 41 (111)
T 2kgr_A 11 SSRLKYRQLFNSHDKTMSGHLTGPQARTILM 41 (111)
T ss_dssp HHHHHHHHHHHTTSCSSCCEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 3456788888888876544455566655554
No 86
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion, structural genomics, PSI, protein structur initiative, structural genomics of pathogenic protozoa CONS SGPP; 1.70A {Plasmodium falciparum} PDB: 2auc_A
Probab=24.60 E-value=58 Score=23.76 Aligned_cols=46 Identities=11% Similarity=0.131 Sum_probs=34.2
Q ss_pred HHHHHHHHhCCCHHHHhcCCHHHHHHhhccchhhcchhHHHHHHHH
Q 024157 213 RHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIEN 258 (271)
Q Consensus 213 Re~fReAF~~FDp~~VA~~~E~~Ie~L~~d~~IIRNr~KIrAII~N 258 (271)
.+.++++|.-||.+.=-.++-+++..++..-+.-.+...+..++..
T Consensus 83 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~ 128 (146)
T 2qac_A 83 VEELIKMFAHFDNNCTGYLTKSQMKNILTTWGDALTDQEAIDALNA 128 (146)
T ss_dssp HHHHHHHHHTTCTTCSSEEEHHHHHHHHHHSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 5778999999999877778888888877665554566666666553
No 87
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=24.54 E-value=3e+02 Score=23.15 Aligned_cols=41 Identities=7% Similarity=0.130 Sum_probs=29.9
Q ss_pred hccCCHHHHHHhHHHHHHHHhCCCHHHHhcCCHHHHHHhhc
Q 024157 201 LSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGS 241 (271)
Q Consensus 201 QAGLSW~tILkKRe~fReAF~~FDp~~VA~~~E~~Ie~L~~ 241 (271)
..+++=.|+-..+..++..+..|.-..|..++..+|...+.
T Consensus 89 ~~~~~~~T~~~y~~~~~~~~~~~g~~~l~~it~~~i~~~~~ 129 (356)
T 1z1b_A 89 SRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLN 129 (356)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHSCSCBGGGCCHHHHHHHHH
T ss_pred hcccChhHHHHHHHHHHHHHHHhcCCcHHHCCHHHHHHHHH
Confidence 45788888877777777655556555688899999987655
No 88
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=23.80 E-value=1.5e+02 Score=19.03 Aligned_cols=31 Identities=13% Similarity=0.150 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHhccCCHHHHHHhHHHHHHHH
Q 024157 188 DKKLFELLVLSGALSELTWPAILSKRHIFREVF 220 (271)
Q Consensus 188 Dr~LFElL~LEgfQAGLSW~tILkKRe~fReAF 220 (271)
|..|++.|-.-+.+.|+|...++. +++++.+
T Consensus 17 ~~el~~~l~~~a~~~g~s~s~~ir--~ai~~~l 47 (55)
T 2k9i_A 17 PQEWHDRLMEIAKEKNLTLSDVCR--LAIKEYL 47 (55)
T ss_dssp CHHHHHHHHHHHHHHTCCHHHHHH--HHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCHHHHHH--HHHHHHH
Confidence 567888898889999999998874 4555544
No 89
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z 1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z 3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z 2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Probab=23.80 E-value=47 Score=24.45 Aligned_cols=45 Identities=22% Similarity=0.198 Sum_probs=31.6
Q ss_pred HHHHHHHHhCCCHHHHhcCCHHHHHHhhccchhhcchhHHHHHHH
Q 024157 213 RHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIE 257 (271)
Q Consensus 213 Re~fReAF~~FDp~~VA~~~E~~Ie~L~~d~~IIRNr~KIrAII~ 257 (271)
.+.++++|..||...=-.++-+++..++..-+.-.+...|..++.
T Consensus 83 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~ 127 (156)
T 1wdc_C 83 FADYMEAFKTFDREGQGFISGAELRHVLTALGERLSDEDVDEIIK 127 (156)
T ss_dssp HHHHHHHHHTTCSSSSSEEEHHHHHHHHHHSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 367889999999887667778888777765554445555555554
No 90
>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A 1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X* 3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A* 3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ...
Probab=23.67 E-value=37 Score=24.22 Aligned_cols=32 Identities=16% Similarity=0.087 Sum_probs=21.5
Q ss_pred HHhHHHHHHHHhCCCHHHHh---cCCHHHHHHhhcc
Q 024157 210 LSKRHIFREVFVGFDPIAVS---KLNEKKLLAAGSA 242 (271)
Q Consensus 210 LkKRe~fReAF~~FDp~~VA---~~~E~~Ie~L~~d 242 (271)
.+-.+.++++|..|| ..=- .++-+++..++..
T Consensus 5 e~~~~~l~~~F~~~D-~~dG~~g~Is~~EL~~~l~~ 39 (92)
T 3rm1_A 5 EKAVVALIDVFHQYS-GREGDKHKLKKSELKELINN 39 (92)
T ss_dssp HHHHHHHHHHHHHHH-TSSSSTTSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc-cCCCCcCeECHHHHHHHHHH
Confidence 344567888888888 4333 6777788776654
No 91
>2kiw_A INT protein; alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus haemolyticus JCSC1435}
Probab=23.17 E-value=1.9e+02 Score=19.99 Aligned_cols=71 Identities=8% Similarity=0.141 Sum_probs=38.8
Q ss_pred HhccCCHHHHHHhHHHHHHHHhCCCHHHHhcCCHHHHHHhhccchhhcchhHHHHHHHHHHHHHHHHHhcC
Q 024157 200 ALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISKVDFYFH 270 (271)
Q Consensus 200 fQAGLSW~tILkKRe~fReAF~~FDp~~VA~~~E~~Ie~L~~d~~IIRNr~KIrAII~NArailkI~~E~G 270 (271)
...+++=.|+-..+..++..|..|.-..|.+++..+|...+..-.--....-+.-++..-+.+++...+.|
T Consensus 13 ~~~~~~~~T~~~y~~~~~~~i~~~g~~~l~~It~~~i~~~~~~l~~~~s~~t~~~~~~~lr~~~~~A~~~~ 83 (111)
T 2kiw_A 13 YANDVKVSSVRAREKAIQHAIERFNTKPIQTIKKHDYQRFVDDISAQYSKNYVDSIVASTNMIFKYAYDTR 83 (111)
T ss_dssp HTTSSCHHHHHHHHHHHHHHHHHTTSSCGGGCCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHccCCcchHHHHHHHHHHHHHHHCcCcHHHcCHHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHHHHhC
Confidence 35678777877777666643223333467889999988765531100123334444444455555444444
No 92
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=22.92 E-value=99 Score=21.81 Aligned_cols=40 Identities=13% Similarity=0.073 Sum_probs=22.7
Q ss_pred CHHHHhcCCHHHHHHhhccchhhcchhHHHHHHHHHHHHHHHHHhcCC
Q 024157 224 DPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISKVDFYFHY 271 (271)
Q Consensus 224 Dp~~VA~~~E~~Ie~L~~d~~IIRNr~KIrAII~NArailkI~~E~G~ 271 (271)
|+.+.+.++..-|-+.+.+..-|. -+..+.|+++.+|+||
T Consensus 14 diA~~aGVS~sTVSr~ln~~~~vs--------~~t~~rV~~~a~~lgY 53 (67)
T 2l8n_A 14 DVALKAKVSTATVSRALMNPDKVS--------QATRNRVEKAAREVGY 53 (67)
T ss_dssp HHHHHTTCCHHHHHHTTTCCCCSC--------HHHHHHHHHHHHHHCC
T ss_pred HHHHHHCCCHHHHHHHHcCCCCCC--------HHHHHHHHHHHHHhCC
Confidence 345555556666666555543332 2344567777777777
No 93
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=22.63 E-value=57 Score=23.99 Aligned_cols=45 Identities=16% Similarity=0.154 Sum_probs=32.9
Q ss_pred HHHHHHHhCCCHHHHhcCCHHHHHHhhccchhhcchhHHHHHHHH
Q 024157 214 HIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIEN 258 (271)
Q Consensus 214 e~fReAF~~FDp~~VA~~~E~~Ie~L~~d~~IIRNr~KIrAII~N 258 (271)
..++++|..||.+.=-.++-+++..++..-++-.+...|..++..
T Consensus 16 ~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~ 60 (153)
T 2ovk_B 16 QELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAMLKE 60 (153)
T ss_dssp HHHHHHHHHHCCSTTTCCCHHHHHHHTTTTTSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCeECHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 678888888888777788888888877765555566666666543
No 94
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein, regulation, complex, calcium, EF- hand, calmodulin, ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis thaliana}
Probab=22.42 E-value=56 Score=24.53 Aligned_cols=45 Identities=7% Similarity=-0.014 Sum_probs=28.9
Q ss_pred HHHHHHHHhCCCHHHHhcCCHHHHHHhhccchh-hcchhHHHHHHH
Q 024157 213 RHIFREVFVGFDPIAVSKLNEKKLLAAGSAASS-LLSELKLRAIIE 257 (271)
Q Consensus 213 Re~fReAF~~FDp~~VA~~~E~~Ie~L~~d~~I-IRNr~KIrAII~ 257 (271)
.+.++++|..||.+.=-.++-+++..++..-++ -.....|..++.
T Consensus 39 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~e~~~~~~ 84 (135)
T 3h4s_E 39 VSELCKGFSLLADPERHLITAESLRRNSGILGIEGMSKEDAQGMVR 84 (135)
T ss_dssp HHHHHHHHHHHSBTTTTBBCHHHHHHHGGGGTCCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 356788888888877667777777776665443 334444554443
No 95
>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A
Probab=21.98 E-value=49 Score=22.03 Aligned_cols=43 Identities=14% Similarity=0.200 Sum_probs=28.5
Q ss_pred HHHHHHHHhCCCHHHHhcCCHHHHHHhhccch-hhcchhHHHHHH
Q 024157 213 RHIFREVFVGFDPIAVSKLNEKKLLAAGSAAS-SLLSELKLRAII 256 (271)
Q Consensus 213 Re~fReAF~~FDp~~VA~~~E~~Ie~L~~d~~-IIRNr~KIrAII 256 (271)
.+.++ +|.-||.+.=-.++-+++..++..-+ .-.+...|..++
T Consensus 8 ~~~l~-~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~ 51 (81)
T 1c7v_A 8 EEILR-AFKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAM 51 (81)
T ss_dssp HHHHH-HHHHHSCSGGGEECHHHHHHHSSTTTTCCCCHHHHHHHH
T ss_pred HHHHH-HHHHHCCCCCCcCCHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 45678 88888887777778888887776544 334444454444
No 96
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4 PDB: 2pas_A 3pat_A
Probab=21.62 E-value=48 Score=23.27 Aligned_cols=46 Identities=17% Similarity=0.204 Sum_probs=32.9
Q ss_pred hHHHHHHHHhCCCHHHHhcCCHHHHHHhhccc---hhhcchhHHHHHHH
Q 024157 212 KRHIFREVFVGFDPIAVSKLNEKKLLAAGSAA---SSLLSELKLRAIIE 257 (271)
Q Consensus 212 KRe~fReAF~~FDp~~VA~~~E~~Ie~L~~d~---~IIRNr~KIrAII~ 257 (271)
..+.++++|..||.+.=-.++-+++..++..- +.-.+...|..++.
T Consensus 40 ~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~ 88 (110)
T 1pva_A 40 SANDVKKVFKAIDADASGFIEEEELKFVLKSFAADGRDLTDAETKAFLK 88 (110)
T ss_dssp CHHHHHHHHHHHCTTCSSSBCHHHHHTGGGGTCTTCCCCCHHHHHHHHH
T ss_pred hHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Confidence 45778999999998887788889998877654 33344555555544
No 97
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=21.56 E-value=30 Score=22.04 Aligned_cols=15 Identities=20% Similarity=0.328 Sum_probs=9.3
Q ss_pred HhcCCHHHHHHhhcc
Q 024157 228 VSKLNEKKLLAAGSA 242 (271)
Q Consensus 228 VA~~~E~~Ie~L~~d 242 (271)
|..|+|++|++|+.|
T Consensus 6 vtrfdekqieelldn 20 (31)
T 4h62_V 6 VTRFDEKQIEELLDN 20 (31)
T ss_dssp ----CHHHHHHHHHH
T ss_pred cccccHHHHHHHHHH
Confidence 567899999998765
No 98
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=21.47 E-value=80 Score=22.18 Aligned_cols=40 Identities=5% Similarity=0.004 Sum_probs=23.4
Q ss_pred CHHHHhcCCHHHHHHhhccch---hhcchhHHHHHHHHHHHHHHHHHhcCC
Q 024157 224 DPIAVSKLNEKKLLAAGSAAS---SLLSELKLRAIIENARQISKVDFYFHY 271 (271)
Q Consensus 224 Dp~~VA~~~E~~Ie~L~~d~~---IIRNr~KIrAII~NArailkI~~E~G~ 271 (271)
|+.+.+.++..-|-+++.+.. -|. .+.++.|+++.+++||
T Consensus 5 diA~~aGVS~sTVSrvLng~~~~~~vs--------~et~~rI~~aa~~lgY 47 (65)
T 1uxc_A 5 EIARLAGVSRTTASYVINGKAKQYRVS--------DKTVEKVMAVVREHNY 47 (65)
T ss_dssp HHHHHHTSCHHHHHHHHHTCTTTTTCT--------THHHHHHHHHHHHHTC
T ss_pred HHHHHHCcCHHHHHHHHcCCCCCCCCC--------HHHHHHHHHHHHHhCC
Confidence 455556666666666666543 222 2445566666777776
No 99
>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal binding protein; 2.10A {Mus musculus} PDB: 2g2b_A
Probab=21.45 E-value=51 Score=25.28 Aligned_cols=47 Identities=19% Similarity=0.227 Sum_probs=32.3
Q ss_pred HhHHHHHHHHhCCCHHHHhcCCHHHHHHhhccchhhcchhHHHHHHH
Q 024157 211 SKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIE 257 (271)
Q Consensus 211 kKRe~fReAF~~FDp~~VA~~~E~~Ie~L~~d~~IIRNr~KIrAII~ 257 (271)
...+.++++|.-||.+.=-.++-+++..++..-+.-.+...|..++.
T Consensus 45 ~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~g~~~~~~~~~~l~~ 91 (147)
T 1wy9_A 45 SKLEAFKVKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKRLIR 91 (147)
T ss_dssp HHHHHHHHHHTTSCCCTTSSEEHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 45677999999999877667777888776665444444555555543
No 100
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6
Probab=21.27 E-value=25 Score=25.95 Aligned_cols=32 Identities=3% Similarity=0.019 Sum_probs=22.0
Q ss_pred hHHHHHHHHhCCCHHHHhcCCHHHHHHhhccc
Q 024157 212 KRHIFREVFVGFDPIAVSKLNEKKLLAAGSAA 243 (271)
Q Consensus 212 KRe~fReAF~~FDp~~VA~~~E~~Ie~L~~d~ 243 (271)
..+.|+++|.-||.+.=-.++-+++..++..-
T Consensus 9 ~~~~~~~~F~~~D~d~dG~Is~~el~~~l~~~ 40 (99)
T 1qjt_A 9 GNPVYEKYYRQVEAGNTGRVLALDAAAFLKKS 40 (99)
T ss_dssp TCTHHHHHHHHHCCTTSSCCCSHHHHHHHHTS
T ss_pred hHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHc
Confidence 45678888888888765566666666655543
No 101
>1lhs_A Myoglobin; oxygen storage; HET: HEM; 2.00A {Caretta caretta} SCOP: a.1.1.2 PDB: 1lht_A*
Probab=21.25 E-value=56 Score=25.79 Aligned_cols=55 Identities=9% Similarity=0.155 Sum_probs=37.3
Q ss_pred CHHHHHHh-----HHHHHHHHhCCCHHHHhcCCH----HHHHHhhccchhhcchhHHHHHHHHHH
Q 024157 205 TWPAILSK-----RHIFREVFVGFDPIAVSKLNE----KKLLAAGSAASSLLSELKLRAIIENAR 260 (271)
Q Consensus 205 SW~tILkK-----Re~fReAF~~FDp~~VA~~~E----~~Ie~L~~d~~IIRNr~KIrAII~NAr 260 (271)
+|..|-.. ...|...|..+ |+.-..|+. ...+.|+.++.+-.+..||...+..+-
T Consensus 13 sw~~v~~~~~~~g~~~~~rlF~~~-P~~k~~F~~f~~~~~~~~l~~n~~~~~h~~~v~~al~~~v 76 (153)
T 1lhs_A 13 IWAKVEPDLSAHGQEVIIRLFQLH-PETQERFAKFKNLTTIDALKSSEEVKKHGTTVLTALGRIL 76 (153)
T ss_dssp HHHHHGGGHHHHHHHHHHHHHHHC-HHHHTTCGGGTTCCSHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHC-hhHHHHhHhhcCCCcHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 45555433 35566666666 777666652 246778899999899999988887753
No 102
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand, cross-reactivity; 1.75A {Phleum pratense} SCOP: a.39.1.10
Probab=21.11 E-value=25 Score=23.32 Aligned_cols=27 Identities=22% Similarity=0.231 Sum_probs=13.9
Q ss_pred HHHHHHhCCCHHHHhcCCHHHHHHhhc
Q 024157 215 IFREVFVGFDPIAVSKLNEKKLLAAGS 241 (271)
Q Consensus 215 ~fReAF~~FDp~~VA~~~E~~Ie~L~~ 241 (271)
.++++|..||.+.=-.++-+++..++.
T Consensus 4 ~l~~~F~~~D~~~~G~i~~~el~~~l~ 30 (78)
T 1k9u_A 4 DMERIFKRFDTNGDGKISLSELTDALR 30 (78)
T ss_dssp HHHHHHHHHCTTCSSEECHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 355666666655444445555544443
No 103
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion, structural genomics, PSI, protein structur initiative, structural genomics of pathogenic protozoa CONS SGPP; 1.70A {Plasmodium falciparum} PDB: 2auc_A
Probab=20.76 E-value=31 Score=25.27 Aligned_cols=31 Identities=10% Similarity=0.013 Sum_probs=15.4
Q ss_pred HhHHHHHHHHhCCCHHH-HhcCCHHHHHHhhc
Q 024157 211 SKRHIFREVFVGFDPIA-VSKLNEKKLLAAGS 241 (271)
Q Consensus 211 kKRe~fReAF~~FDp~~-VA~~~E~~Ie~L~~ 241 (271)
.....++++|..||.+. =-.++-+++..++.
T Consensus 11 ~~~~~l~~~F~~~D~d~~~G~i~~~el~~~l~ 42 (146)
T 2qac_A 11 EEKVDESDVRIYFNEKSSGGKISIDNASYNAR 42 (146)
T ss_dssp HHHSCHHHHHHHHHHHCBTTBEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccCCCCcccHHHHHHHHH
Confidence 33444555555555554 44445555544433
No 104
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=20.38 E-value=57 Score=25.25 Aligned_cols=44 Identities=16% Similarity=0.161 Sum_probs=28.7
Q ss_pred HHHHHHHHhCCCHHHHhcCCHHHHHHhhccchhhcchhHHHHHH
Q 024157 213 RHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAII 256 (271)
Q Consensus 213 Re~fReAF~~FDp~~VA~~~E~~Ie~L~~d~~IIRNr~KIrAII 256 (271)
.+.+++||.-||.+.=-.++-+++..++..-+.-.+..-|..++
T Consensus 84 ~~~l~~aF~~fD~d~~G~I~~~el~~~l~~~g~~ls~~ei~~~~ 127 (153)
T 3i5g_B 84 EDALRNAFSMFDEDGQGFIPEDYLKDLLENMGDNFSKEEIKNVW 127 (153)
T ss_dssp HHHHHHHHHTTCSSCSSCCCHHHHHHHHHSSSSCCCHHHHHHHH
T ss_pred HHHHHHHHhccccCCCCeEeHHHHHHHHHHcCCcCCHHHHHHHH
Confidence 46788999999988766677777776665544333444444443
No 105
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=20.16 E-value=38 Score=22.90 Aligned_cols=43 Identities=16% Similarity=0.152 Sum_probs=24.1
Q ss_pred HHHHHHHHhCCCHHHHhcCCHHHHHHhhccchhhcchhHHHHHH
Q 024157 213 RHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAII 256 (271)
Q Consensus 213 Re~fReAF~~FDp~~VA~~~E~~Ie~L~~d~~IIRNr~KIrAII 256 (271)
.+.++++|..||.+.=-.++-+++..++..-+ -.+...|..++
T Consensus 10 ~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g-~~~~~~~~~~~ 52 (86)
T 2opo_A 10 IADRERIFKRFDTNGDGKISSSELGDALKTLG-SVTPDEVRRMM 52 (86)
T ss_dssp HHHHHHHHHHHCTTCSSEEEHHHHHHHHHTTT-TCCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCcCHHHHHHHHHHcC-CCCHHHHHHHH
Confidence 35677888888876555556666665554433 23333444433
No 106
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR {Schizosaccharomyces pombe} SCOP: a.39.1.5
Probab=20.08 E-value=61 Score=23.36 Aligned_cols=44 Identities=18% Similarity=0.175 Sum_probs=31.3
Q ss_pred HHHHHHHhCCCHHHHhcCCHHHHHHhhccchhhcchhHHHHHHH
Q 024157 214 HIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIE 257 (271)
Q Consensus 214 e~fReAF~~FDp~~VA~~~E~~Ie~L~~d~~IIRNr~KIrAII~ 257 (271)
+.++++|..||.+.=-.++.+++..++..-+.-....-+..++.
T Consensus 76 ~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~ 119 (140)
T 1ggw_A 76 EEFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLK 119 (140)
T ss_dssp HHHHHHHHTTCSSCSSCCCHHHHHHHHHHHHSCSCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 77899999999887777888888887765443344444544443
No 107
>2eam_A Putative 47 kDa protein; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.07 E-value=26 Score=25.41 Aligned_cols=43 Identities=14% Similarity=0.226 Sum_probs=29.2
Q ss_pred HHHHHHHhC--CCH-HHH--hcCCHHHHHHhhccchhhcchhHHHHHHHH
Q 024157 214 HIFREVFVG--FDP-IAV--SKLNEKKLLAAGSAASSLLSELKLRAIIEN 258 (271)
Q Consensus 214 e~fReAF~~--FDp-~~V--A~~~E~~Ie~L~~d~~IIRNr~KIrAII~N 258 (271)
+.|.+.|.. ||- +.| ..|+++++.+|.... +-||.||...|..
T Consensus 25 ~~Y~~~F~~~~i~~~~~l~~~~lt~~dL~~lGI~~--~ghR~kIl~ai~~ 72 (80)
T 2eam_A 25 PQYENHLMANGFDNVQFMGSNVMEDQDLLEIGILN--SGHRQRILQAIQL 72 (80)
T ss_dssp GGGHHHHHHTTCCCTTTSSSSSSCTTHHHHSSCCC--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHhhccCCHHHHHHCCCCC--HHHHHHHHHHHHH
Confidence 456667755 543 355 699999999875532 4589998766653
Done!