BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024161
(271 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1U6M|A Chain A, The Crystal Structure Of Acetyltransferase
pdb|1U6M|B Chain B, The Crystal Structure Of Acetyltransferase
pdb|1U6M|C Chain C, The Crystal Structure Of Acetyltransferase
pdb|1U6M|D Chain D, The Crystal Structure Of Acetyltransferase
Length = 199
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 36/61 (59%)
Query: 184 YISGLAVSKRFRRQKIATALMKACEVLAVLWGFEYLVLRAYEDDYGARRLYSNAGYRVVS 243
Y+ ++V +RFR I + L+ A +A G + L L D+ GAR+LY++ G++ V+
Sbjct: 114 YLDTISVDERFRGMGIGSKLLDALPEVAKASGKQALGLNVDFDNPGARKLYASKGFKDVT 173
Query: 244 S 244
+
Sbjct: 174 T 174
>pdb|1BO4|A Chain A, Crystal Structure Of A Gcn5-Related N-Acetyltransferase:
Serratia Marescens Aminoglycoside 3-N-Acetyltransferase
pdb|1BO4|B Chain B, Crystal Structure Of A Gcn5-Related N-Acetyltransferase:
Serratia Marescens Aminoglycoside 3-N-Acetyltransferase
Length = 168
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
Query: 155 QRKLVGVVDVTVLRDDPVLQHLRGAEEYLYISGLAVSKRFRRQKIATALMKACEVLAVLW 214
Q +VG + VL P + R +YI LAVS RRQ IATAL+ + A
Sbjct: 84 QEAVVGALAAYVL---PKFEQPRSE---IYIYDLAVSGEHRRQGIATALINLLKHEANAL 137
Query: 215 GFEYLVLRAYEDDYGARRLYSNAGYR 240
G + ++A D A LY+ G R
Sbjct: 138 GAYVIYVQADYGDDPAVALYTKLGIR 163
>pdb|3Q3E|A Chain A, Crystal Structure Of The Actinobacillus Pleuropneumoniae
Hmw1c Glycosyltransferase
pdb|3Q3E|B Chain B, Crystal Structure Of The Actinobacillus Pleuropneumoniae
Hmw1c Glycosyltransferase
pdb|3Q3H|A Chain A, Crystal Structure Of The Actinobacillus Pleuropneumoniae
Hmw1c Glycosyltransferase In Complex With Udp-Glc
pdb|3Q3H|B Chain B, Crystal Structure Of The Actinobacillus Pleuropneumoniae
Hmw1c Glycosyltransferase In Complex With Udp-Glc
pdb|3Q3I|A Chain A, Crystal Structure Of The Actinobacillus Pleuropneumoniae
Hmw1c Glycosyltransferase In The Presence Of Peptide
N1131
pdb|3Q3I|B Chain B, Crystal Structure Of The Actinobacillus Pleuropneumoniae
Hmw1c Glycosyltransferase In The Presence Of Peptide
N1131
Length = 631
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 63 KKNDINKQFEYLV-----SEYGWKVRKLVRVG-EEMREVAFIQAEAFHNPVALF 110
K+D+ + +++ SEYGWK R + +G + V + E FH+ +++
Sbjct: 238 NKHDVKRALNHVIRRHIESEYGWKDRDVAHIGYRNNKPVMVVLLEHFHSAHSIY 291
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 64/167 (38%), Gaps = 25/167 (14%)
Query: 71 FEYLVSEYGWKVRKLVRVGEEMREVAFIQAEAFHNPVALFNDVFFEFFKAEVLSGLLYKL 130
F+ +V+ W+ L + F+ E NP+ F + + ++GL++ L
Sbjct: 301 FDNMVTTLPWEFGNLCNL-------QFLGVEG--NPLE---KQFLKILTEKSVTGLIFYL 348
Query: 131 RNSPPDRYACLVAEHSNPNDNIEPQRKLVGV--------VDV-----TVLRDDPVLQHLR 177
R++ P+ N + EPQR+ + D+ TVL + + QH
Sbjct: 349 RDNRPEIPLPHERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQHYA 408
Query: 178 GAEEYLYISGLAVSKRFRRQKIATALMKACEVLAVLWGFEYLVLRAY 224
+ Y Y A+S +RR K+ ++ L L E Y
Sbjct: 409 TPKMYRYTPSWALSWDYRRNKLKEQILSYDSDLLCLQEVESKTFEEY 455
>pdb|3DG3|A Chain A, Crystal Structure Of Muconate Lactonizing Enzyme From
Mucobacterium Smegmatis
pdb|3DG6|A Chain A, Crystal Structure Of Muconate Lactonizing Enzyme From
Mucobacterium Smegmatis Complexed With Muconolactone
pdb|3DG7|A Chain A, Crystal Structure Of Muconate Lactonizing Enzyme From
Mucobacterium Smegmatis Complexed With Muconolactone
pdb|3DG7|B Chain B, Crystal Structure Of Muconate Lactonizing Enzyme From
Mucobacterium Smegmatis Complexed With Muconolactone
pdb|3DG7|C Chain C, Crystal Structure Of Muconate Lactonizing Enzyme From
Mucobacterium Smegmatis Complexed With Muconolactone
pdb|3DG7|D Chain D, Crystal Structure Of Muconate Lactonizing Enzyme From
Mucobacterium Smegmatis Complexed With Muconolactone
Length = 367
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 141 LVAEHSNPNDNIEPQRKLVGVVDVTVLRDDPVLQHLRGAEEYLYISGLAVSKRFRR 196
L AE P D++ +R+LVG +D+ + D+ V E L S A+S + R
Sbjct: 214 LFAEELCPADDVLSRRRLVGQLDMPFIADESVPTPADVTREVLGGSATAISIKTAR 269
>pdb|1ZHI|B Chain B, Complex Of The S. Cerevisiae Orc1 And Sir1 Interacting
Domains
Length = 138
Score = 27.3 bits (59), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 14/90 (15%)
Query: 90 EEMREVAFIQAEAFHNPVALFNDVFFEF---FKAEVLSGLLYKLRNSPPDRYACLVAEHS 146
++M V + + + +P+ L F+F K + L G +KL P +
Sbjct: 57 DQMNLVKWNDFKKYQDPIPLKAKTLFKFCKQIKKKFLRGADFKLHTLP-----------T 105
Query: 147 NPNDNIEPQRKLVGVVDVTVLRDDPVLQHL 176
N EP+R V V +L DD +Q+L
Sbjct: 106 EANLKYEPERMTVLASCVPILLDDQTVQYL 135
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,894,535
Number of Sequences: 62578
Number of extensions: 319512
Number of successful extensions: 651
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 647
Number of HSP's gapped (non-prelim): 9
length of query: 271
length of database: 14,973,337
effective HSP length: 97
effective length of query: 174
effective length of database: 8,903,271
effective search space: 1549169154
effective search space used: 1549169154
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)