Query 024162
Match_columns 271
No_of_seqs 300 out of 2030
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 02:32:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024162.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024162hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4020 Protein DRE2, required 100.0 1.4E-51 3E-56 354.6 13.1 200 49-269 46-256 (257)
2 PF05093 CIAPIN1: Cytokine-ind 100.0 2.9E-48 6.4E-53 297.3 5.8 84 179-262 1-100 (100)
3 COG5636 Uncharacterized conser 100.0 3.6E-44 7.8E-49 306.3 5.9 239 1-266 1-275 (284)
4 COG2226 UbiE Methylase involve 99.3 3.4E-12 7.4E-17 113.8 9.2 76 16-94 84-160 (238)
5 PLN02232 ubiquinone biosynthes 99.2 2.9E-11 6.4E-16 101.5 8.3 79 15-93 5-84 (160)
6 PF01209 Ubie_methyltran: ubiE 99.2 1.9E-11 4.2E-16 108.9 6.9 76 15-93 80-156 (233)
7 PLN02233 ubiquinone biosynthes 99.2 8.6E-11 1.9E-15 106.2 11.1 80 15-94 106-186 (261)
8 PF08241 Methyltransf_11: Meth 99.2 8.8E-11 1.9E-15 87.7 8.0 68 15-88 27-95 (95)
9 KOG1540 Ubiquinone biosynthesi 99.0 7.8E-10 1.7E-14 98.7 8.1 78 16-93 139-217 (296)
10 PRK11873 arsM arsenite S-adeno 99.0 6.7E-09 1.5E-13 93.8 12.5 102 16-120 111-228 (272)
11 KOG4300 Predicted methyltransf 98.9 4.6E-09 1E-13 91.3 9.0 89 15-106 107-198 (252)
12 PTZ00098 phosphoethanolamine N 98.9 9.8E-09 2.1E-13 92.9 10.7 100 16-120 84-200 (263)
13 PLN02244 tocopherol O-methyltr 98.9 6E-09 1.3E-13 97.7 9.3 76 15-92 149-225 (340)
14 PRK10258 biotin biosynthesis p 98.9 4.9E-09 1.1E-13 93.6 8.2 81 16-104 73-154 (251)
15 PLN02490 MPBQ/MSBQ methyltrans 98.8 3E-08 6.4E-13 93.1 10.6 122 16-143 146-283 (340)
16 TIGR02752 MenG_heptapren 2-hep 98.8 6.1E-08 1.3E-12 85.2 10.8 75 16-93 79-154 (231)
17 PLN02336 phosphoethanolamine N 98.6 2.4E-07 5.2E-12 90.2 11.1 99 16-118 298-410 (475)
18 PLN02396 hexaprenyldihydroxybe 98.5 1.1E-07 2.3E-12 88.8 6.0 77 15-93 161-238 (322)
19 TIGR00740 methyltransferase, p 98.5 5.1E-07 1.1E-11 80.1 9.8 74 15-92 87-163 (239)
20 PRK15068 tRNA mo(5)U34 methylt 98.5 3.8E-07 8.3E-12 85.0 8.4 105 15-122 153-274 (322)
21 COG2521 Predicted archaeal met 98.5 1.5E-07 3.4E-12 83.2 5.3 96 37-141 186-287 (287)
22 TIGR02072 BioC biotin biosynth 98.5 1.1E-06 2.4E-11 76.6 9.8 73 16-95 67-140 (240)
23 PF13847 Methyltransf_31: Meth 98.4 7.5E-07 1.6E-11 73.5 7.8 73 16-92 37-112 (152)
24 PRK15451 tRNA cmo(5)U34 methyl 98.4 1.4E-06 3.1E-11 77.9 9.7 74 15-92 90-166 (247)
25 TIGR00452 methyltransferase, p 98.4 7E-07 1.5E-11 83.0 7.9 104 15-121 152-272 (314)
26 PRK14103 trans-aconitate 2-met 98.4 5.1E-07 1.1E-11 81.0 6.5 66 16-92 62-128 (255)
27 PRK00216 ubiE ubiquinone/menaq 98.4 4E-06 8.7E-11 73.2 11.6 75 16-92 85-160 (239)
28 PRK08317 hypothetical protein; 98.4 2.8E-06 6.1E-11 73.8 10.3 73 16-92 53-126 (241)
29 smart00828 PKS_MT Methyltransf 98.3 1.5E-06 3.2E-11 76.0 7.8 103 16-121 32-143 (224)
30 PRK11088 rrmA 23S rRNA methylt 98.3 1.3E-06 2.8E-11 79.3 6.9 67 16-96 121-187 (272)
31 PF13649 Methyltransf_25: Meth 98.3 7.9E-07 1.7E-11 68.3 4.6 65 16-84 33-101 (101)
32 PRK11036 putative S-adenosyl-L 98.3 9.2E-07 2E-11 79.4 5.4 77 15-93 74-152 (255)
33 PRK05785 hypothetical protein; 98.3 1.5E-06 3.2E-11 77.0 6.6 58 15-83 82-140 (226)
34 TIGR01934 MenG_MenH_UbiE ubiqu 98.3 1.2E-05 2.7E-10 69.4 11.7 72 16-92 73-145 (223)
35 PRK01683 trans-aconitate 2-met 98.3 2.7E-06 5.9E-11 76.1 7.6 69 15-92 63-132 (258)
36 PRK11207 tellurite resistance 98.2 3.9E-06 8.4E-11 72.7 7.5 71 16-90 61-134 (197)
37 smart00138 MeTrc Methyltransfe 98.2 3.7E-06 8E-11 76.3 6.8 55 37-91 186-243 (264)
38 COG2227 UbiG 2-polyprenyl-3-me 98.2 1.4E-06 3E-11 77.6 3.6 75 15-93 89-164 (243)
39 KOG2940 Predicted methyltransf 98.2 1.5E-06 3.2E-11 77.0 3.7 81 16-101 104-185 (325)
40 PRK00121 trmB tRNA (guanine-N( 98.1 1.1E-05 2.4E-10 70.2 8.4 93 15-117 72-176 (202)
41 PRK00107 gidB 16S rRNA methylt 98.1 3.7E-05 8.1E-10 66.4 10.9 90 15-120 77-167 (187)
42 PF12847 Methyltransf_18: Meth 98.1 1.4E-05 3E-10 61.8 7.3 73 15-90 33-111 (112)
43 TIGR02716 C20_methyl_CrtF C-20 98.1 2.9E-05 6.4E-10 71.4 10.7 72 17-92 182-256 (306)
44 PF08242 Methyltransf_12: Meth 98.1 9.6E-07 2.1E-11 67.3 0.6 34 53-86 65-99 (99)
45 PLN02336 phosphoethanolamine N 98.1 1.5E-05 3.3E-10 77.7 9.0 101 15-120 67-180 (475)
46 TIGR00477 tehB tellurite resis 98.1 1.6E-05 3.5E-10 68.7 8.1 71 16-91 61-134 (195)
47 PF13489 Methyltransf_23: Meth 98.0 5E-06 1.1E-10 68.0 3.8 49 45-93 69-118 (161)
48 PRK04266 fibrillarin; Provisio 98.0 8.2E-05 1.8E-09 66.1 11.3 83 36-124 120-212 (226)
49 KOG3045 Predicted RNA methylas 98.0 2.1E-05 4.5E-10 70.9 6.9 77 40-121 214-290 (325)
50 PF05148 Methyltransf_8: Hypot 97.9 1.6E-05 3.5E-10 69.6 5.9 75 41-120 109-183 (219)
51 PRK06922 hypothetical protein; 97.9 1.9E-05 4.1E-10 79.6 7.2 73 16-92 451-539 (677)
52 TIGR00091 tRNA (guanine-N(7)-) 97.9 5.2E-05 1.1E-09 65.4 8.5 74 16-92 49-134 (194)
53 TIGR00138 gidB 16S rRNA methyl 97.9 6.4E-05 1.4E-09 64.4 8.9 94 15-120 74-167 (181)
54 PRK12335 tellurite resistance 97.9 4.8E-05 1E-09 69.6 8.4 70 16-90 151-223 (287)
55 PTZ00146 fibrillarin; Provisio 97.9 0.00028 6.1E-09 65.0 12.9 111 4-125 158-274 (293)
56 PLN03075 nicotianamine synthas 97.9 4.1E-05 9E-10 70.6 7.5 73 16-90 158-233 (296)
57 PF03848 TehB: Tellurite resis 97.8 7.9E-05 1.7E-09 64.7 8.3 78 6-92 55-135 (192)
58 PF05401 NodS: Nodulation prot 97.8 9.1E-05 2E-09 64.4 7.5 71 16-92 74-148 (201)
59 TIGR01983 UbiG ubiquinone bios 97.8 0.00011 2.5E-09 63.9 8.4 73 16-92 76-151 (224)
60 COG4106 Tam Trans-aconitate me 97.7 5.1E-05 1.1E-09 66.8 5.7 70 15-93 62-132 (257)
61 KOG1270 Methyltransferases [Co 97.7 3.3E-05 7.1E-10 69.7 4.1 75 15-93 119-198 (282)
62 TIGR03587 Pse_Me-ase pseudamin 97.7 0.00015 3.2E-09 63.4 7.6 68 15-93 75-145 (204)
63 TIGR00537 hemK_rel_arch HemK-r 97.7 0.00049 1.1E-08 58.3 10.4 91 16-119 50-162 (179)
64 PRK06202 hypothetical protein; 97.7 0.00016 3.4E-09 63.8 7.6 71 15-93 96-169 (232)
65 KOG3010 Methyltransferase [Gen 97.6 6.2E-05 1.3E-09 67.1 4.7 76 15-92 63-139 (261)
66 PRK05134 bifunctional 3-demeth 97.6 0.00038 8.2E-09 61.2 8.5 73 16-92 79-153 (233)
67 PRK11705 cyclopropane fatty ac 97.5 0.00024 5.3E-09 67.8 7.4 69 15-92 198-269 (383)
68 PRK11188 rrmJ 23S rRNA methylt 97.5 0.00031 6.7E-09 61.5 7.4 58 36-93 91-168 (209)
69 PRK14967 putative methyltransf 97.4 0.0028 6E-08 55.7 12.6 72 16-92 68-161 (223)
70 PF08003 Methyltransf_9: Prote 97.4 0.00073 1.6E-08 62.4 8.8 85 38-123 167-268 (315)
71 PF02353 CMAS: Mycolic acid cy 97.4 0.0004 8.6E-09 63.5 6.9 73 15-92 93-168 (273)
72 PF05891 Methyltransf_PK: AdoM 97.4 0.00025 5.4E-09 62.5 5.2 106 13-121 84-200 (218)
73 TIGR02469 CbiT precorrin-6Y C5 97.4 0.00053 1.1E-08 53.5 6.6 70 16-90 52-122 (124)
74 TIGR01177 conserved hypothetic 97.4 0.00067 1.5E-08 63.3 8.3 92 16-121 213-314 (329)
75 KOG1541 Predicted protein carb 97.4 0.00084 1.8E-08 59.4 8.0 89 16-117 81-182 (270)
76 PRK00377 cbiT cobalt-precorrin 97.3 0.0015 3.2E-08 56.4 9.1 92 16-120 74-167 (198)
77 TIGR03534 RF_mod_PrmC protein- 97.3 0.0019 4.1E-08 57.0 10.1 94 16-121 120-240 (251)
78 PRK14121 tRNA (guanine-N(7)-)- 97.3 0.00076 1.6E-08 64.5 7.5 74 16-92 155-237 (390)
79 PF03141 Methyltransf_29: Puta 97.3 0.00025 5.4E-09 69.2 4.1 100 4-111 139-242 (506)
80 PRK08287 cobalt-precorrin-6Y C 97.2 0.0024 5.1E-08 54.4 9.5 92 16-121 64-155 (187)
81 TIGR03840 TMPT_Se_Te thiopurin 97.2 0.0014 3E-08 57.7 8.1 57 36-92 94-154 (213)
82 KOG2361 Predicted methyltransf 97.2 0.00083 1.8E-08 60.1 6.4 78 16-93 106-186 (264)
83 PRK00517 prmA ribosomal protei 97.2 0.0023 5E-08 57.3 9.3 72 54-141 179-250 (250)
84 PRK13942 protein-L-isoaspartat 97.2 0.0012 2.5E-08 57.9 7.1 68 15-90 109-176 (212)
85 PRK13944 protein-L-isoaspartat 97.1 0.0012 2.7E-08 57.4 6.9 68 16-90 106-173 (205)
86 PRK10611 chemotaxis methyltran 97.1 0.00056 1.2E-08 63.0 4.8 55 36-90 204-262 (287)
87 PF00891 Methyltransf_2: O-met 97.1 0.0012 2.6E-08 58.5 6.5 65 16-92 132-201 (241)
88 cd02440 AdoMet_MTases S-adenos 97.1 0.0025 5.5E-08 46.4 7.2 54 36-89 47-103 (107)
89 PF01739 CheR: CheR methyltran 97.1 0.00088 1.9E-08 58.3 5.2 56 36-91 118-176 (196)
90 PRK14968 putative methyltransf 97.0 0.007 1.5E-07 50.8 9.8 95 16-119 54-170 (188)
91 KOG1269 SAM-dependent methyltr 96.9 0.00083 1.8E-08 63.8 3.7 54 40-93 164-218 (364)
92 KOG1331 Predicted methyltransf 96.9 0.00083 1.8E-08 61.3 3.5 55 39-93 88-146 (293)
93 PF13659 Methyltransf_26: Meth 96.9 0.0022 4.7E-08 49.8 5.3 74 16-91 32-116 (117)
94 COG4627 Uncharacterized protei 96.8 0.00027 5.8E-09 59.3 -0.1 47 46-92 39-88 (185)
95 TIGR00080 pimt protein-L-isoas 96.8 0.0037 7.9E-08 54.6 7.0 67 16-90 111-177 (215)
96 TIGR02021 BchM-ChlM magnesium 96.7 0.0044 9.6E-08 54.1 6.6 70 15-89 85-157 (219)
97 PRK15001 SAM-dependent 23S rib 96.7 0.0064 1.4E-07 58.1 8.1 75 16-91 261-341 (378)
98 TIGR02081 metW methionine bios 96.6 0.003 6.5E-08 54.2 4.9 58 15-82 44-104 (194)
99 TIGR03438 probable methyltrans 96.6 0.007 1.5E-07 55.8 7.6 75 16-92 97-179 (301)
100 PF05175 MTS: Methyltransferas 96.6 0.013 2.8E-07 49.4 8.6 78 6-92 58-142 (170)
101 PRK07580 Mg-protoporphyrin IX 96.6 0.0091 2E-07 52.0 7.6 67 16-87 94-163 (230)
102 PRK09328 N5-glutamine S-adenos 96.5 0.029 6.2E-07 50.3 10.6 94 16-121 141-261 (275)
103 PRK13255 thiopurine S-methyltr 96.5 0.0073 1.6E-07 53.3 6.5 56 35-90 96-155 (218)
104 PRK09489 rsmC 16S ribosomal RN 96.5 0.0099 2.1E-07 56.0 7.8 71 16-92 229-305 (342)
105 PRK00312 pcm protein-L-isoaspa 96.4 0.011 2.5E-07 51.2 7.3 68 16-91 109-176 (212)
106 TIGR00438 rrmJ cell division p 96.4 0.018 3.9E-07 49.1 8.2 56 37-92 73-148 (188)
107 PRK01581 speE spermidine synth 96.3 0.017 3.7E-07 54.9 8.2 100 16-118 183-293 (374)
108 PRK13256 thiopurine S-methyltr 96.3 0.016 3.4E-07 51.6 7.4 58 35-92 102-165 (226)
109 PF01234 NNMT_PNMT_TEMT: NNMT/ 96.3 0.028 6E-07 51.0 9.0 80 40-119 138-236 (256)
110 PRK14901 16S rRNA methyltransf 96.2 0.04 8.7E-07 53.4 10.5 74 16-92 286-386 (434)
111 TIGR00406 prmA ribosomal prote 96.2 0.038 8.1E-07 50.7 9.7 71 16-92 191-261 (288)
112 PRK03612 spermidine synthase; 96.2 0.02 4.4E-07 56.9 8.3 97 16-115 330-437 (521)
113 COG2230 Cfa Cyclopropane fatty 96.2 0.013 2.9E-07 53.7 6.5 74 15-93 103-179 (283)
114 PRK00811 spermidine synthase; 96.1 0.014 3.1E-07 53.4 6.5 76 16-91 109-192 (283)
115 PRK07402 precorrin-6B methylas 96.1 0.038 8.3E-07 47.4 8.9 71 16-92 73-144 (196)
116 PHA03411 putative methyltransf 96.1 0.022 4.8E-07 52.2 7.4 92 16-118 97-210 (279)
117 TIGR03533 L3_gln_methyl protei 96.1 0.054 1.2E-06 49.6 10.1 90 16-117 154-269 (284)
118 COG2519 GCD14 tRNA(1-methylade 96.0 0.054 1.2E-06 48.9 9.6 92 17-123 129-221 (256)
119 TIGR00563 rsmB ribosomal RNA s 96.0 0.065 1.4E-06 51.8 10.7 76 16-93 271-371 (426)
120 COG1352 CheR Methylase of chem 96.0 0.013 2.9E-07 53.4 5.6 55 36-90 184-241 (268)
121 COG4123 Predicted O-methyltran 96.0 0.048 1E-06 49.2 9.1 115 16-140 77-212 (248)
122 PF11968 DUF3321: Putative met 96.0 0.014 3.1E-07 51.5 5.4 82 41-122 88-181 (219)
123 PF03291 Pox_MCEL: mRNA cappin 95.9 0.031 6.7E-07 52.5 8.1 91 2-92 84-188 (331)
124 PF05219 DREV: DREV methyltran 95.9 0.016 3.5E-07 52.5 5.8 65 15-91 124-189 (265)
125 PLN02585 magnesium protoporphy 95.9 0.045 9.6E-07 51.1 8.8 68 16-87 175-247 (315)
126 PF06859 Bin3: Bicoid-interact 95.9 0.0049 1.1E-07 48.7 2.0 38 54-91 1-45 (110)
127 PRK10901 16S rRNA methyltransf 95.8 0.099 2.2E-06 50.6 11.4 73 16-92 277-374 (427)
128 PRK04457 spermidine synthase; 95.8 0.037 8E-07 50.2 7.9 75 16-92 99-179 (262)
129 PF06080 DUF938: Protein of un 95.8 0.017 3.7E-07 50.6 5.4 41 52-92 100-143 (204)
130 TIGR00446 nop2p NOL1/NOP2/sun 95.7 0.038 8.1E-07 50.0 7.6 74 16-92 105-201 (264)
131 PF07942 N2227: N2227-like pro 95.7 0.017 3.6E-07 52.8 5.1 85 36-120 144-240 (270)
132 PF02390 Methyltransf_4: Putat 95.7 0.077 1.7E-06 46.0 9.0 77 35-118 66-156 (195)
133 TIGR00536 hemK_fam HemK family 95.7 0.13 2.8E-06 46.9 10.8 95 16-121 147-268 (284)
134 PRK14966 unknown domain/N5-glu 95.5 0.11 2.5E-06 50.2 10.3 94 16-121 284-404 (423)
135 PRK14904 16S rRNA methyltransf 95.5 0.059 1.3E-06 52.4 8.4 74 16-93 284-380 (445)
136 COG2264 PrmA Ribosomal protein 95.4 0.12 2.7E-06 47.8 9.8 71 53-140 228-299 (300)
137 PRK14903 16S rRNA methyltransf 95.4 0.13 2.7E-06 50.1 10.1 75 16-93 271-369 (431)
138 COG4976 Predicted methyltransf 95.3 0.014 3.1E-07 52.1 3.1 98 16-121 156-264 (287)
139 PRK13943 protein-L-isoaspartat 95.3 0.035 7.6E-07 52.0 5.9 68 15-90 113-180 (322)
140 PF05430 Methyltransf_30: S-ad 95.3 0.02 4.3E-07 46.3 3.6 73 35-118 30-107 (124)
141 COG0500 SmtA SAM-dependent met 95.3 0.16 3.5E-06 38.2 8.5 56 38-93 100-158 (257)
142 PLN02366 spermidine synthase 95.2 0.061 1.3E-06 50.0 7.2 75 16-90 124-206 (308)
143 PRK14902 16S rRNA methyltransf 94.9 0.12 2.7E-06 50.2 8.5 73 16-92 284-381 (444)
144 KOG1975 mRNA cap methyltransfe 94.9 0.1 2.3E-06 48.8 7.5 56 37-92 173-239 (389)
145 PRK11805 N5-glutamine S-adenos 94.8 0.14 3E-06 47.5 8.4 73 16-91 166-264 (307)
146 TIGR00417 speE spermidine synt 94.8 0.13 2.8E-06 46.6 7.9 75 16-90 105-186 (270)
147 PF01135 PCMT: Protein-L-isoas 94.8 0.051 1.1E-06 47.8 5.1 69 15-91 105-173 (209)
148 PF07021 MetW: Methionine bios 94.7 0.052 1.1E-06 47.1 4.7 71 38-119 57-130 (193)
149 COG4798 Predicted methyltransf 94.6 0.072 1.6E-06 46.6 5.5 52 70-121 146-204 (238)
150 KOG2352 Predicted spermine/spe 94.6 0.1 2.2E-06 51.1 7.1 73 16-92 80-163 (482)
151 KOG2899 Predicted methyltransf 94.4 0.05 1.1E-06 49.0 4.1 44 48-91 160-210 (288)
152 PF08704 GCD14: tRNA methyltra 94.4 0.17 3.6E-06 45.7 7.6 76 36-122 92-171 (247)
153 COG2518 Pcm Protein-L-isoaspar 94.3 0.17 3.7E-06 44.5 7.3 68 16-91 103-170 (209)
154 COG0220 Predicted S-adenosylme 94.0 0.15 3.3E-06 45.4 6.5 56 37-92 99-166 (227)
155 PF12147 Methyltransf_20: Puta 93.9 0.79 1.7E-05 42.4 10.9 111 6-122 164-298 (311)
156 KOG1271 Methyltransferases [Ge 93.8 0.15 3.3E-06 44.2 5.8 95 16-120 100-203 (227)
157 PF05724 TPMT: Thiopurine S-me 93.8 0.14 3E-06 45.2 5.7 54 36-89 97-154 (218)
158 PRK00536 speE spermidine synth 93.7 0.41 8.9E-06 43.6 8.7 92 16-118 103-195 (262)
159 COG1041 Predicted DNA modifica 93.7 0.23 5.1E-06 46.8 7.3 91 16-121 228-329 (347)
160 PF01269 Fibrillarin: Fibrilla 93.5 0.85 1.8E-05 40.6 10.1 113 3-126 98-216 (229)
161 TIGR03704 PrmC_rel_meth putati 93.5 0.64 1.4E-05 41.8 9.6 88 16-117 119-235 (251)
162 PF03269 DUF268: Caenorhabditi 93.4 0.07 1.5E-06 45.2 3.0 71 52-122 61-145 (177)
163 smart00650 rADc Ribosomal RNA 93.1 0.19 4E-06 42.1 5.1 69 16-91 44-114 (169)
164 PF03141 Methyltransf_29: Puta 93.0 0.081 1.8E-06 52.0 3.1 47 46-92 419-469 (506)
165 PLN02823 spermine synthase 92.9 0.26 5.6E-06 46.5 6.4 75 16-90 136-220 (336)
166 PRK01544 bifunctional N5-gluta 92.8 0.97 2.1E-05 44.9 10.5 94 16-120 171-291 (506)
167 PRK13699 putative methylase; P 92.5 0.26 5.7E-06 43.7 5.5 72 40-119 4-93 (227)
168 PF06325 PrmA: Ribosomal prote 92.1 0.63 1.4E-05 43.1 7.7 73 51-140 222-294 (295)
169 PF01564 Spermine_synth: Sperm 91.7 1.2 2.6E-05 40.0 8.8 77 16-92 109-193 (246)
170 PRK01544 bifunctional N5-gluta 91.5 0.79 1.7E-05 45.5 8.1 57 36-92 397-464 (506)
171 PRK11933 yebU rRNA (cytosine-C 91.0 0.84 1.8E-05 45.0 7.7 82 4-92 139-244 (470)
172 PRK11524 putative methyltransf 91.0 0.32 7E-06 44.4 4.5 52 39-90 10-80 (284)
173 KOG3178 Hydroxyindole-O-methyl 90.7 0.86 1.9E-05 43.0 7.1 52 38-92 223-277 (342)
174 PF05185 PRMT5: PRMT5 arginine 90.6 0.88 1.9E-05 44.6 7.4 53 34-87 239-294 (448)
175 PF11899 DUF3419: Protein of u 90.5 0.52 1.1E-05 45.2 5.6 58 36-93 275-337 (380)
176 KOG1709 Guanidinoacetate methy 90.5 0.3 6.5E-06 43.4 3.6 56 37-92 150-208 (271)
177 COG2813 RsmC 16S RNA G1207 met 90.2 1.3 2.8E-05 41.1 7.7 70 17-92 192-268 (300)
178 PLN02781 Probable caffeoyl-CoA 90.2 1.3 2.9E-05 39.3 7.7 71 16-91 102-179 (234)
179 COG0421 SpeE Spermidine syntha 90.1 0.81 1.8E-05 42.1 6.3 76 16-91 109-191 (282)
180 COG2242 CobL Precorrin-6B meth 90.1 3.7 8E-05 35.6 9.9 87 17-116 68-154 (187)
181 PF01170 UPF0020: Putative RNA 89.9 0.6 1.3E-05 39.8 5.0 72 16-90 70-150 (179)
182 PF02527 GidB: rRNA small subu 88.7 2.1 4.6E-05 36.8 7.5 53 36-92 98-150 (184)
183 COG4122 Predicted O-methyltran 88.3 0.93 2E-05 40.2 5.1 73 16-93 93-169 (219)
184 KOG1661 Protein-L-isoaspartate 88.2 1.8 3.9E-05 38.4 6.7 74 13-91 114-194 (237)
185 PHA03412 putative methyltransf 87.7 2.1 4.6E-05 38.5 7.1 61 16-85 85-158 (241)
186 PLN02672 methionine S-methyltr 86.7 4.1 8.9E-05 44.2 9.7 78 37-123 185-304 (1082)
187 PRK15128 23S rRNA m(5)C1962 me 85.4 7.4 0.00016 37.5 10.0 76 16-92 252-341 (396)
188 PRK13168 rumA 23S rRNA m(5)U19 85.3 3 6.6E-05 40.5 7.4 71 15-91 327-401 (443)
189 PLN02668 indole-3-acetate carb 84.8 2.9 6.3E-05 40.2 6.8 73 50-122 158-278 (386)
190 KOG3201 Uncharacterized conser 84.5 1.7 3.6E-05 37.1 4.5 104 5-118 56-162 (201)
191 COG0144 Sun tRNA and rRNA cyto 84.5 3.6 7.7E-05 39.0 7.3 82 5-93 184-291 (355)
192 PF10294 Methyltransf_16: Puta 84.5 3.3 7.1E-05 34.9 6.4 85 3-92 69-158 (173)
193 PRK11783 rlmL 23S rRNA m(2)G24 84.1 3.3 7.1E-05 42.8 7.4 76 16-92 570-658 (702)
194 PF03059 NAS: Nicotianamine sy 83.9 3.3 7.1E-05 38.1 6.5 56 35-90 173-230 (276)
195 PRK01747 mnmC bifunctional tRN 83.8 1.8 3.9E-05 44.2 5.3 70 37-117 148-222 (662)
196 KOG2798 Putative trehalase [Ca 83.6 2 4.4E-05 40.2 5.0 82 39-120 241-335 (369)
197 COG3963 Phospholipid N-methylt 83.6 3.3 7.2E-05 35.5 5.9 71 15-93 81-159 (194)
198 KOG1499 Protein arginine N-met 82.5 1.8 3.9E-05 40.8 4.3 69 17-87 92-164 (346)
199 PLN02476 O-methyltransferase 79.3 7.4 0.00016 35.8 7.1 71 16-91 152-229 (278)
200 PF09243 Rsm22: Mitochondrial 78.8 9.6 0.00021 34.7 7.7 96 15-119 66-165 (274)
201 COG1889 NOP1 Fibrillarin-like 76.7 54 0.0012 29.1 11.4 112 3-126 100-218 (231)
202 PF06962 rRNA_methylase: Putat 76.6 23 0.00049 29.3 8.5 56 37-92 27-94 (140)
203 COG1092 Predicted SAM-dependen 76.3 7.3 0.00016 37.6 6.4 77 16-93 249-339 (393)
204 PF02475 Met_10: Met-10+ like- 75.3 9.8 0.00021 33.2 6.5 75 4-88 126-200 (200)
205 TIGR00479 rumA 23S rRNA (uraci 75.0 11 0.00025 36.2 7.5 71 15-90 322-396 (431)
206 PF03492 Methyltransf_7: SAM d 74.9 9.2 0.0002 35.9 6.6 80 43-122 96-222 (334)
207 PF01596 Methyltransf_3: O-met 74.3 7.9 0.00017 33.8 5.6 72 16-92 79-157 (205)
208 COG0357 GidB Predicted S-adeno 74.2 16 0.00035 32.3 7.6 76 36-120 117-193 (215)
209 KOG3507 DNA-directed RNA polym 73.4 1.3 2.9E-05 31.0 0.4 21 229-249 20-46 (62)
210 PRK10909 rsmD 16S rRNA m(2)G96 73.1 19 0.00042 31.2 7.7 56 37-92 103-161 (199)
211 PF14740 DUF4471: Domain of un 72.9 7.1 0.00015 36.1 5.2 64 52-120 220-287 (289)
212 PLN02589 caffeoyl-CoA O-methyl 72.2 5.7 0.00012 35.8 4.3 71 16-91 113-191 (247)
213 KOG3987 Uncharacterized conser 71.6 3.4 7.4E-05 36.7 2.6 64 15-90 142-207 (288)
214 KOG1500 Protein arginine N-met 71.6 7.8 0.00017 36.9 5.1 72 15-89 207-281 (517)
215 COG2520 Predicted methyltransf 70.9 25 0.00054 33.3 8.4 100 6-115 214-313 (341)
216 COG2890 HemK Methylase of poly 70.4 46 0.00099 30.4 9.9 42 70-119 218-260 (280)
217 KOG1663 O-methyltransferase [S 69.8 24 0.00051 31.7 7.5 52 36-90 125-183 (237)
218 PF10672 Methyltrans_SAM: S-ad 69.4 12 0.00026 34.5 5.9 77 16-93 155-241 (286)
219 PF10354 DUF2431: Domain of un 68.9 15 0.00032 31.0 5.9 75 43-122 60-152 (166)
220 PF14801 GCD14_N: tRNA methylt 67.1 2.7 5.8E-05 29.0 0.8 13 253-265 5-17 (54)
221 COG4262 Predicted spermidine s 66.8 9.9 0.00021 36.6 4.8 99 16-117 322-431 (508)
222 COG5459 Predicted rRNA methyla 66.1 10 0.00022 36.3 4.7 47 47-93 177-228 (484)
223 KOG1099 SAM-dependent methyltr 65.0 10 0.00022 34.3 4.2 56 37-92 90-165 (294)
224 PF06557 DUF1122: Protein of u 64.5 18 0.00039 30.7 5.4 67 70-143 66-142 (170)
225 PF01555 N6_N4_Mtase: DNA meth 64.5 4.6 0.0001 34.3 2.1 23 70-92 36-58 (231)
226 KOG1122 tRNA and rRNA cytosine 63.2 33 0.00071 33.5 7.6 81 4-92 267-373 (460)
227 PF13578 Methyltransf_24: Meth 61.7 2.9 6.3E-05 31.7 0.3 54 36-90 49-105 (106)
228 PF13909 zf-H2C2_5: C2H2-type 60.0 3.7 8.1E-05 22.8 0.4 11 241-251 1-11 (24)
229 TIGR03439 methyl_EasF probable 58.1 58 0.0013 30.5 8.3 54 37-90 133-197 (319)
230 PRK03522 rumB 23S rRNA methylu 57.9 24 0.00051 32.6 5.7 72 16-92 204-276 (315)
231 PRK11783 rlmL 23S rRNA m(2)G24 55.4 36 0.00079 35.2 7.0 75 16-92 265-349 (702)
232 COG5379 BtaA S-adenosylmethion 54.8 22 0.00048 33.3 4.7 58 36-93 307-369 (414)
233 PF01861 DUF43: Protein of unk 53.1 71 0.0015 28.8 7.6 98 16-121 76-177 (243)
234 PF01189 Nol1_Nop2_Fmu: NOL1/N 53.1 15 0.00032 33.6 3.4 83 3-92 110-221 (283)
235 PRK04338 N(2),N(2)-dimethylgua 51.6 36 0.00078 32.6 5.9 50 37-89 108-157 (382)
236 COG0293 FtsJ 23S rRNA methylas 51.1 55 0.0012 28.8 6.5 58 36-93 85-162 (205)
237 KOG1562 Spermidine synthase [A 49.7 46 0.001 31.2 6.0 59 32-90 171-236 (337)
238 PF14258 DUF4350: Domain of un 48.9 82 0.0018 21.9 6.1 65 14-89 5-69 (70)
239 PF11253 DUF3052: Protein of u 48.8 88 0.0019 25.4 6.8 69 52-122 43-111 (127)
240 TIGR00006 S-adenosyl-methyltra 47.5 20 0.00042 33.5 3.3 23 70-92 220-242 (305)
241 COG0116 Predicted N6-adenine-s 46.7 70 0.0015 30.8 6.9 75 16-92 263-346 (381)
242 COG0275 Predicted S-adenosylme 44.6 23 0.0005 33.1 3.2 23 70-92 224-246 (314)
243 PF01558 POR: Pyruvate ferredo 43.6 49 0.0011 27.4 4.9 39 47-92 49-88 (173)
244 PF05566 Pox_vIL-18BP: Orthopo 42.8 7.1 0.00015 30.9 -0.3 13 240-254 36-49 (126)
245 PRK00050 16S rRNA m(4)C1402 me 42.3 26 0.00057 32.4 3.3 23 70-92 216-238 (296)
246 PF11604 CusF_Ec: Copper bindi 42.0 17 0.00037 26.0 1.6 11 253-263 42-52 (70)
247 PRK14896 ksgA 16S ribosomal RN 41.0 94 0.002 27.7 6.6 44 16-66 60-103 (258)
248 PF05484 LRV_FeS: LRV protein 40.8 15 0.00032 25.7 1.0 16 237-252 8-23 (57)
249 PF01795 Methyltransf_5: MraW 40.3 22 0.00049 33.2 2.5 23 70-92 221-243 (310)
250 COG4121 Uncharacterized conser 40.2 63 0.0014 29.3 5.3 73 37-120 147-227 (252)
251 PRK10862 SoxR reducing system 40.0 30 0.00065 28.8 3.0 11 253-263 58-68 (154)
252 KOG2539 Mitochondrial/chloropl 39.7 68 0.0015 31.8 5.7 48 47-94 266-319 (491)
253 smart00659 RPOLCX RNA polymera 39.5 20 0.00044 23.5 1.5 18 232-249 5-28 (44)
254 KOG1596 Fibrillarin and relate 39.4 3.1E+02 0.0067 25.2 11.7 110 4-126 182-299 (317)
255 PRK00432 30S ribosomal protein 38.4 17 0.00036 24.6 1.0 11 239-249 36-46 (50)
256 PF01728 FtsJ: FtsJ-like methy 38.0 35 0.00076 28.4 3.2 40 53-92 90-141 (181)
257 PF11575 FhuF_C: FhuF 2Fe-2S C 37.2 22 0.00048 19.9 1.2 12 238-249 11-22 (22)
258 PF04672 Methyltransf_19: S-ad 36.7 1E+02 0.0022 28.3 6.1 57 38-94 123-194 (267)
259 PF04246 RseC_MucC: Positive r 36.7 43 0.00092 26.9 3.4 13 252-264 50-62 (135)
260 TIGR00755 ksgA dimethyladenosi 35.7 88 0.0019 27.7 5.6 65 15-90 59-126 (253)
261 TIGR02085 meth_trns_rumB 23S r 35.0 1.1E+02 0.0024 29.0 6.4 71 16-91 264-335 (374)
262 cd05565 PTS_IIB_lactose PTS_II 34.1 82 0.0018 24.3 4.4 76 4-89 2-77 (99)
263 PF06283 ThuA: Trehalose utili 32.1 2.6E+02 0.0056 23.9 7.8 38 53-90 51-88 (217)
264 cd05794 S1_EF-P_repeat_2 S1_EF 31.4 32 0.0007 23.8 1.6 15 251-265 34-49 (56)
265 smart00739 KOW KOW (Kyprides, 31.2 36 0.00078 19.0 1.5 15 253-267 1-15 (28)
266 PRK09489 rsmC 16S ribosomal RN 30.6 1E+02 0.0022 29.0 5.3 41 53-93 75-115 (342)
267 COG3086 RseC Positive regulato 30.6 22 0.00047 29.6 0.6 12 252-263 57-68 (150)
268 PF12353 eIF3g: Eukaryotic tra 29.6 30 0.00066 28.0 1.4 23 227-251 104-126 (128)
269 TIGR00095 RNA methyltransferas 29.3 3.5E+02 0.0077 22.9 8.1 55 37-91 100-160 (189)
270 COG2813 RsmC 16S RNA G1207 met 29.1 1.4E+02 0.0029 27.9 5.7 39 54-92 37-75 (300)
271 PF03604 DNA_RNApol_7kD: DNA d 28.8 39 0.00084 20.7 1.4 13 237-249 14-26 (32)
272 KOG2906 RNA polymerase III sub 28.5 23 0.00049 27.5 0.4 10 240-249 21-30 (105)
273 PF00107 ADH_zinc_N: Zinc-bind 27.2 1.1E+02 0.0023 23.5 4.1 36 53-93 57-92 (130)
274 KOG3191 Predicted N6-DNA-methy 26.8 3.4E+02 0.0074 23.8 7.3 98 5-118 70-189 (209)
275 PF09926 DUF2158: Uncharacteri 26.3 43 0.00093 22.9 1.4 11 254-264 1-11 (53)
276 PF12225 MTHFR_C: Methylene-te 26.1 32 0.00069 26.6 0.9 12 229-240 23-34 (97)
277 PHA01519 hypothetical protein 25.1 31 0.00068 27.3 0.7 13 247-259 21-33 (115)
278 PF03602 Cons_hypoth95: Conser 24.9 95 0.002 26.4 3.7 56 37-92 93-155 (183)
279 PRK08537 2-oxoglutarate ferred 24.8 2E+02 0.0044 23.9 5.7 31 53-90 66-96 (177)
280 TIGR00308 TRM1 tRNA(guanine-26 24.7 1.7E+02 0.0038 27.9 5.8 74 6-89 72-146 (374)
281 COG2093 DNA-directed RNA polym 24.2 19 0.00041 25.6 -0.7 8 197-204 3-10 (64)
282 cd06844 STAS Sulphate Transpor 23.6 2.1E+02 0.0046 21.1 5.1 47 61-118 46-95 (100)
283 PF02150 RNA_POL_M_15KD: RNA p 23.1 34 0.00075 21.2 0.4 8 242-249 22-29 (35)
284 PF13602 ADH_zinc_N_2: Zinc-bi 22.8 35 0.00077 26.2 0.6 36 51-90 16-51 (127)
285 PRK09880 L-idonate 5-dehydroge 22.7 2.6E+02 0.0056 25.5 6.5 33 54-91 235-267 (343)
286 KOG0822 Protein kinase inhibit 22.6 71 0.0015 32.3 2.7 57 34-91 419-479 (649)
287 TIGR02175 PorC_KorC 2-oxoacid: 22.2 1.6E+02 0.0035 24.6 4.6 33 51-90 63-97 (177)
288 KOG2904 Predicted methyltransf 21.7 5.9E+02 0.013 23.8 8.2 46 47-92 215-287 (328)
289 PRK00103 rRNA large subunit me 21.7 2.1E+02 0.0045 23.9 5.0 73 5-81 69-147 (157)
290 PRK06490 glutamine amidotransf 21.7 4.1E+02 0.0089 23.5 7.3 54 2-63 7-61 (239)
291 KOG2198 tRNA cytosine-5-methyl 21.3 1.4E+02 0.003 28.7 4.3 24 70-93 276-299 (375)
292 PF12511 DUF3716: Protein of u 21.1 43 0.00094 23.1 0.7 17 228-244 40-57 (60)
293 KOG2915 tRNA(1-methyladenosine 21.0 6.9E+02 0.015 23.3 8.9 79 34-123 155-236 (314)
294 PF02384 N6_Mtase: N-6 DNA Met 20.8 1.5E+02 0.0032 26.9 4.4 76 40-117 109-208 (311)
295 COG1064 AdhP Zn-dependent alco 20.8 1.6E+02 0.0036 27.8 4.7 33 54-92 229-261 (339)
296 TIGR03601 B_an_ocin probable h 20.7 64 0.0014 23.4 1.4 6 241-246 60-65 (79)
297 smart00259 ZnF_A20 A20-like zi 20.6 55 0.0012 19.1 0.9 14 242-255 3-18 (26)
298 PF04816 DUF633: Family of unk 20.2 5.8E+02 0.012 22.1 8.2 101 4-121 22-123 (205)
299 cd05567 PTS_IIB_mannitol PTS_I 20.0 2.9E+02 0.0062 20.1 5.0 52 4-62 2-53 (87)
300 PF05711 TylF: Macrocin-O-meth 20.0 1.2E+02 0.0026 27.4 3.5 57 35-93 156-215 (248)
No 1
>KOG4020 consensus Protein DRE2, required for cell viability [Function unknown]
Probab=100.00 E-value=1.4e-51 Score=354.61 Aligned_cols=200 Identities=39% Similarity=0.583 Sum_probs=136.7
Q ss_pred CCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecCCCCcccHHHHHHHHHHHHHHcCCcchhhhhhccccC
Q 024162 49 PVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQLKSVVP 128 (271)
Q Consensus 49 p~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~~~e~~~~~~~l~~~l~laGF~~v~~~~~~~~~~ 128 (271)
.++.++||+.+... .+...-.+....+..|+|+|.+.+....- .. ..+.....+.|+.++......-.+.
T Consensus 46 t~~~~~~e~~~~e~--a~~~~~~V~~l~~~~l~P~gtl~v~s~~g----~~----~~~l~~~~i~g~~~~~~~s~d~~s~ 115 (257)
T KOG4020|consen 46 TLENARYELLTPEA--ATLSGLKVKSLLRASLKPEGTLSVLSHIG----HA----DDLLLFVKITGEKDYCWISPDVSSA 115 (257)
T ss_pred cccccceeccchhh--ccccccchhhhhhcccCccceEehhhhcc----ch----hhHHHHHHHhCCccccccCcccccc
Confidence 35567888554422 12222245566677899999999887541 11 1444567888888764332111001
Q ss_pred cceeEEEEEeeCCCcccccccccccCccc--------cccccC--CCCCCccCccccCCccccCCCCCCCCC-CCCCCCc
Q 024162 129 AEVVSFGVKGKKPTWKIGSSFAIKKAPKS--------LAKLQV--DDDSDLIDEDTLLTEEDLKKPQLPSVG-DCEVGST 197 (271)
Q Consensus 129 ~~~~~~~i~a~KPs~~~gss~~l~~~~~~--------~~~~~~--d~d~dlided~ll~~~d~~~~~~~~~~-~C~~~~~ 197 (271)
+.+ |++....|+..++.+.+. ..+.++ |.++|+||||+||++||+++|....+. .|++++|
T Consensus 116 ~ql--------kl~~~K~ss~~~q~a~k~~~~knl~s~sand~s~d~~~dlide~elldee~~~k~~~~~~~a~~~~~kK 187 (257)
T KOG4020|consen 116 NQL--------KLSITKKSSPSLQSASKNAAAKNLWSLSANDMSDDLRQDLIDEEELLDEEDLKKPDPASLRASCSPGKK 187 (257)
T ss_pred ccc--------cccceeccCcccccccccHHHHHhhhhhccccccchhhhccChhhccCHhhcCCCCccccccCCCCccc
Confidence 111 333333333333222111 112222 334799999999999999999988776 8999999
Q ss_pred ccCCCCCccchHHHHHHHHhcCCCccccCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEEecCccccc
Q 024162 198 RKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGSCGLGDAFRCGTCPYKGLPPFKLGEKVSLSSNFLVA 269 (271)
Q Consensus 198 ~~ack~ctcg~~e~~~~~~~~~~~~~~~~~~~s~cg~c~lgdafrc~~cpy~g~pafkpGe~v~l~~~~l~~ 269 (271)
||||||||||+||++|.+.. ......+++|+||||||||||||+||||||||||||||+|.|+++.+..
T Consensus 188 kkaCk~CtcGl~Ee~E~Eks---~~q~s~~~~s~CGnCylGdaFrCs~CPylG~PafkPGe~v~ls~~~~~~ 256 (257)
T KOG4020|consen 188 KKACKNCTCGLAEEEEKEKS---REQISSNPKSACGNCYLGDAFRCSGCPYLGMPAFKPGEKVLLSDNSDKE 256 (257)
T ss_pred chhhhcCCcccHHHHHhhhh---hhhhccCcccccCcccccccceecCCCcCCCCCCCCCCeEEeccccccc
Confidence 99999999999999997742 1122457999999999999999999999999999999999999987653
No 2
>PF05093 CIAPIN1: Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis; InterPro: IPR007785 Anamorsin, subsequently named CIAPIN1 for cytokine-induced anti-apoptosis inhibitor 1, in humans is the homologue of yeast Dre2, a conserved soluble eukaryotic Fe-S cluster protein, that functions in cytosolic Fe-S protein biogenesis. It is found in both the cytoplasm and in the mitochondrial intermembrane space (IMS) []. CIAPIN1 is found to be up-regulated in hepatocellular cancer, is considered to be a downstream effector of the receptor tyrosine kinase-Ras signalling pathway, and is essential in mouse definitive haematopoiesis []. In addition, it has also anti-apoptotic effects in the cell. It is involved in negative control of cell death upon cytokine withdrawal and promotes development of hematopoietic cells [].
Probab=100.00 E-value=2.9e-48 Score=297.29 Aligned_cols=84 Identities=61% Similarity=1.078 Sum_probs=71.6
Q ss_pred cccCCCCCCCCCCCCCC--CcccCCCCCccchHHHHHHHHhcC---------CCcc-----ccCCCCCCCCCCCCCCccc
Q 024162 179 EDLKKPQLPSVGDCEVG--STRKACKNCICGRAEAEEKVEKLG---------LTMD-----QLKNPQSACGSCGLGDAFR 242 (271)
Q Consensus 179 ~d~~~~~~~~~~~C~~~--~~~~ack~ctcg~~e~~~~~~~~~---------~~~~-----~~~~~~s~cg~c~lgdafr 242 (271)
|||++|....+.+|+++ +||||||||||||||+++++.+.. ++.+ .+.+++|||||||||||||
T Consensus 1 eDlkkp~~~~~~~C~~~~~kkrrACKnCTCGlaE~~e~e~~~~~~~~~~~~~~~~~~l~e~~~~~~~ssCGsC~LGDAFR 80 (100)
T PF05093_consen 1 EDLKKPDLVSPKDCGPGCKKKRRACKNCTCGLAEEEEAEKKNARAAQQKALKFTEDELTEITVEGKKSSCGSCYLGDAFR 80 (100)
T ss_pred CCcccCCCcccccccCCccccccccccCCcchHHHhcchhhhhhhhhhhhcccccchhhhhhcccccCccccccccccce
Confidence 68999988888899976 899999999999999998765321 1111 2346899999999999999
Q ss_pred cCCCCCCCCCCCCCCCeEEe
Q 024162 243 CGTCPYKGLPPFKLGEKVSL 262 (271)
Q Consensus 243 c~~cpy~g~pafkpGe~v~l 262 (271)
|+||||||||||||||+|+|
T Consensus 81 Ca~CPYlGlPaFkpGe~V~l 100 (100)
T PF05093_consen 81 CAGCPYLGLPAFKPGEKVKL 100 (100)
T ss_pred ecCCCcCCCCCCCCCCeecC
Confidence 99999999999999999987
No 3
>COG5636 Uncharacterized conserved protein, contains Zn-ribbon-like motif [Function unknown]
Probab=100.00 E-value=3.6e-44 Score=306.29 Aligned_cols=239 Identities=28% Similarity=0.389 Sum_probs=146.9
Q ss_pred CCccEEEEecCCcccHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCC-h-HHHHHHHHH
Q 024162 1 MQSAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP-G-DQLLEEISR 78 (271)
Q Consensus 1 ~~~~vl~~td~~~~~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~-~-~~~L~ei~R 78 (271)
|-..|+|+|+.....+..-...+--.+..+. ..+....+.+..+-+ .+-+.+|.+|+-.-..-|. . .-.|.+-+-
T Consensus 1 ~~~tV~~LT~~~~t~~~~~~K~i~~L~DNGs-~~~L~~I~kV~~LiN--~~IN~~D~~~~~mD~~~~n~Tv~~~L~k~~t 77 (284)
T COG5636 1 KYETVHYLTPEAQTDIKFPKKLISVLADNGS-LIGLSDIYKVDALIN--EIINEPDYCWIKMDSSKLNQTVSIPLKKKKT 77 (284)
T ss_pred CcceeEEeCCccccchhhhhhhhheeccCcc-ccchHHHHHHHHHHh--hhccCCceEEEEcccchhhccccchhhhhhc
Confidence 4567999999998877666655555543332 111222232222223 3456788888744332222 2 456777777
Q ss_pred hccCCcEEEEEecCCCCcccHHHHHHHHHHHHHHcCCcchhhhhhccccCcceeEEEEEeeCCCcccccccccccCccc-
Q 024162 79 VLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQLKSVVPAEVVSFGVKGKKPTWKIGSSFAIKKAPKS- 157 (271)
Q Consensus 79 vLKPGG~l~i~~~~~~~~~e~~~~~~~l~~~l~laGF~~v~~~~~~~~~~~~~~~~~i~a~KPs~~~gss~~l~~~~~~- 157 (271)
-|.|||.|-+..-...+.. .+...+.++|...+.... ++ .-|.|.+. +.|++.+.+.
T Consensus 78 nl~~G~~L~~~~~A~~s~~-------n~~~~A~~S~~~I~~~t~--~~------------~~~~~k~~-t~P~~~~~~d~ 135 (284)
T COG5636 78 NLQSGSKLPTFKKASSSTS-------NLPKKADHSRQPIVKETD--SF------------KPPSFKMT-TEPKVYRVVDD 135 (284)
T ss_pred ccCCCCcccceeccccccc-------cccchhhhcCCceeecCc--cc------------cCCCccce-ecceEEeeccc
Confidence 8999999966543321111 233334445544332221 11 11122111 1122221110
Q ss_pred ----------------cccccCCCCCCccCccccCCccccCCCCCCCCCCCCC--CCcccCCCCCccchHHHHHHH----
Q 024162 158 ----------------LAKLQVDDDSDLIDEDTLLTEEDLKKPQLPSVGDCEV--GSTRKACKNCICGRAEAEEKV---- 215 (271)
Q Consensus 158 ----------------~~~~~~d~d~dlided~ll~~~d~~~~~~~~~~~C~~--~~~~~ack~ctcg~~e~~~~~---- 215 (271)
..-+..|+|+++|+||+||+|+--.+-+. ...|.+ ++|+|||||||||++|+||.+
T Consensus 136 ~~edk~~~~~~l~S~~q~~~~~dtd~~~i~edEllde~s~d~~i~--~~ec~p~~~kKKrACKdCTCGlkE~eE~E~~rt 213 (284)
T COG5636 136 LMEDKEELRKLLRSKAQYMMRKDTDPRTIMEDELLDEDSEDKAIQ--RSECPPSKTKKKRACKDCTCGLKEEEENEIVRT 213 (284)
T ss_pred ccccHHHHHHHHhhhhHhhhccCCChhhhhhhhhhccccccceee--cccCCCCcchhhhhcccCCccchhhhhhhhhhh
Confidence 00123577889999999999953222221 247875 589999999999999999854
Q ss_pred ---HhcCCCccccCC--------CCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEEecCcc
Q 024162 216 ---EKLGLTMDQLKN--------PQSACGSCGLGDAFRCGTCPYKGLPPFKLGEKVSLSSNF 266 (271)
Q Consensus 216 ---~~~~~~~~~~~~--------~~s~cg~c~lgdafrc~~cpy~g~pafkpGe~v~l~~~~ 266 (271)
+.++||..++.+ .+|+||||||||||||+||||+|||||+||+.|.++.|.
T Consensus 214 ~Q~~~VK~Te~~~~e~~~~i~~K~Vs~CGnCylGDAFRCSGCPylGlPaf~PGd~v~~~~nl 275 (284)
T COG5636 214 RQDKVVKFTEDELTEIDFTIDGKKVSACGNCYLGDAFRCSGCPYLGLPAFEPGDVVSFSMNL 275 (284)
T ss_pred hhhhheeccccceeeeeeeeccccccccccccccccceecCCCccCCCCCCCCceeeeeccc
Confidence 357788765432 479999999999999999999999999999999887654
No 4
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.35 E-value=3.4e-12 Score=113.83 Aligned_cols=76 Identities=24% Similarity=0.327 Sum_probs=67.5
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCCC
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLTS 94 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~~~ 94 (271)
++.|++.+|++... .....+.|+++++++|||++++||+|.+.+.++++++ +.+|+|++|||||||++++.+....
T Consensus 84 s~~ML~~a~~k~~~---~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p 160 (238)
T COG2226 84 SESMLEVAREKLKK---KGVQNVEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKP 160 (238)
T ss_pred CHHHHHHHHHHhhc---cCccceEEEEechhhCCCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCC
Confidence 88999999999622 1223399999999999999999999999999999998 9999999999999999999998754
No 5
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.23 E-value=2.9e-11 Score=101.48 Aligned_cols=79 Identities=20% Similarity=0.178 Sum_probs=66.4
Q ss_pred cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCC
Q 024162 15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLT 93 (271)
Q Consensus 15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~~ 93 (271)
.|+.|++.++++..........++.|++++++++|+++++||+|++.+++|++.+ ..+|+|++|+|||||+|++.++..
T Consensus 5 ~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~ 84 (160)
T PLN02232 5 FSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSILDFNK 84 (160)
T ss_pred CCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEEECCC
Confidence 5899999998764211111124689999999999999999999999999999987 899999999999999999998864
No 6
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.22 E-value=1.9e-11 Score=108.91 Aligned_cols=76 Identities=25% Similarity=0.323 Sum_probs=59.0
Q ss_pred cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCC
Q 024162 15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLT 93 (271)
Q Consensus 15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~~ 93 (271)
.|+.|++.++++... ....+|.+++++++++||++++||+|++.+.++.+++ ..+|+|++|+|||||+|++.++..
T Consensus 80 ~s~~ML~~a~~k~~~---~~~~~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~ 156 (233)
T PF01209_consen 80 ISPGMLEVARKKLKR---EGLQNIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSK 156 (233)
T ss_dssp S-HHHHHHHHHHHHH---TT--SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred CCHHHHHHHHHHHHh---hCCCCeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccC
Confidence 489999999998532 1224899999999999999999999999999999988 999999999999999999999864
No 7
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.22 E-value=8.6e-11 Score=106.22 Aligned_cols=80 Identities=20% Similarity=0.218 Sum_probs=67.0
Q ss_pred cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCC
Q 024162 15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLT 93 (271)
Q Consensus 15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~~ 93 (271)
.++.|++.++++..........++.+++++++++|+++++||+|++.+++|++++ ..+++|++|+|||||+|++.++..
T Consensus 106 ~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~ 185 (261)
T PLN02233 106 FSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNK 185 (261)
T ss_pred CCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCC
Confidence 4889999998774211112234789999999999999999999999999999987 899999999999999999999875
Q ss_pred C
Q 024162 94 S 94 (271)
Q Consensus 94 ~ 94 (271)
.
T Consensus 186 ~ 186 (261)
T PLN02233 186 S 186 (261)
T ss_pred C
Confidence 3
No 8
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.19 E-value=8.8e-11 Score=87.72 Aligned_cols=68 Identities=32% Similarity=0.433 Sum_probs=57.1
Q ss_pred cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEE
Q 024162 15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILI 88 (271)
Q Consensus 15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i 88 (271)
+++.|++.++++... ..+.+++++++.+|+++++||+|++..++||+.+ ..+++|++|+|||||+++|
T Consensus 27 ~~~~~~~~~~~~~~~------~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 27 ISEEMLEQARKRLKN------EGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp S-HHHHHHHHHHTTT------STEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred CCHHHHHHHHhcccc------cCchheeehHHhCccccccccccccccceeeccCHHHHHHHHHHHcCcCeEEeC
Confidence 477899999988522 3455899999999999999999999999999977 9999999999999999986
No 9
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.02 E-value=7.8e-10 Score=98.71 Aligned_cols=78 Identities=18% Similarity=0.195 Sum_probs=66.4
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCC
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLT 93 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~~ 93 (271)
.+.|++.+++++....-.....+.|+.+|++.|||++++||+..+.+.+..+.+ +.+|+|.||||||||+|++.++.+
T Consensus 139 np~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFsk 217 (296)
T KOG1540|consen 139 NPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSK 217 (296)
T ss_pred CHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEccc
Confidence 578888888886432223345689999999999999999999999999988876 999999999999999999998864
No 10
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.98 E-value=6.7e-09 Score=93.84 Aligned_cols=102 Identities=23% Similarity=0.328 Sum_probs=75.8
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCCC
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLTS 94 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~~~ 94 (271)
++.|++.++++... ....++.+++++++.+++++++||+|++..++|++++ ..++++++|+|||||+|++.++...
T Consensus 111 s~~~l~~A~~~~~~---~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~ 187 (272)
T PRK11873 111 TPEMLAKARANARK---AGYTNVEFRLGEIEALPVADNSVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLR 187 (272)
T ss_pred CHHHHHHHHHHHHH---cCCCCEEEEEcchhhCCCCCCceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeecc
Confidence 57888888886421 1124688999999999999999999999999998877 8899999999999999999876432
Q ss_pred Cc--ccHHH-------------HHHHHHHHHHHcCCcchhh
Q 024162 95 DK--GDVDK-------------AISALEGKLLLAGFLDAQR 120 (271)
Q Consensus 95 ~~--~e~~~-------------~~~~l~~~l~laGF~~v~~ 120 (271)
.. ..+.. ..+++...+..+||..+..
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~i 228 (272)
T PRK11873 188 GELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDITI 228 (272)
T ss_pred CCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCceEE
Confidence 10 00100 1235556678889987644
No 11
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.93 E-value=4.6e-09 Score=91.27 Aligned_cols=89 Identities=20% Similarity=0.288 Sum_probs=72.8
Q ss_pred cHHHHHHHHHHhCchhhhcCCCCeE-EEeccCCCCC-CCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEec
Q 024162 15 PVSAVLNAIRDLGDEAVEQCDPQII-TQASSLSQLP-VESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKK 91 (271)
Q Consensus 15 ~s~~mv~~ar~~~~~~~~~~~~~v~-~~~~d~e~lp-~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~ 91 (271)
|.+.|-+.+++....+ ...++. |++++.+++| +++.|||+|+...+++...+ .+.|+++.|+|||||++++.++
T Consensus 107 pn~~mee~~~ks~~E~---k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEH 183 (252)
T KOG4300|consen 107 PNEKMEEIADKSAAEK---KPLQVERFVVADGENLPQLADGSYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEH 183 (252)
T ss_pred CcHHHHHHHHHHHhhc---cCcceEEEEeechhcCcccccCCeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEec
Confidence 7899999999886332 345677 9999999999 99999999999999988877 9999999999999999999998
Q ss_pred CCCCcccHHHHHHHH
Q 024162 92 LTSDKGDVDKAISAL 106 (271)
Q Consensus 92 ~~~~~~e~~~~~~~l 106 (271)
..+.-+-+...|++.
T Consensus 184 va~~y~~~n~i~q~v 198 (252)
T KOG4300|consen 184 VAGEYGFWNRILQQV 198 (252)
T ss_pred ccccchHHHHHHHHH
Confidence 875433344444433
No 12
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.90 E-value=9.8e-09 Score=92.92 Aligned_cols=100 Identities=17% Similarity=0.227 Sum_probs=74.9
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCC--h-HHHHHHHHHhccCCcEEEEEecC
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP--G-DQLLEEISRVLKPGGTILIYKKL 92 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~--~-~~~L~ei~RvLKPGG~l~i~~~~ 92 (271)
++.|++.++++... ..++.++.+++...|+++++||+|++..+++|++ + ..++++++|+|||||+|++.++.
T Consensus 84 s~~~~~~a~~~~~~-----~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~ 158 (263)
T PTZ00098 84 CEKMVNIAKLRNSD-----KNKIEFEANDILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYC 158 (263)
T ss_pred CHHHHHHHHHHcCc-----CCceEEEECCcccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 78889999887521 2568899999999999999999999988777775 4 88999999999999999999875
Q ss_pred CCCcccHHH--------------HHHHHHHHHHHcCCcchhh
Q 024162 93 TSDKGDVDK--------------AISALEGKLLLAGFLDAQR 120 (271)
Q Consensus 93 ~~~~~e~~~--------------~~~~l~~~l~laGF~~v~~ 120 (271)
......... ....+...|..+||.++..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 200 (263)
T PTZ00098 159 ADKIENWDEEFKAYIKKRKYTLIPIQEYGDLIKSCNFQNVVA 200 (263)
T ss_pred cccccCcHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCeeeE
Confidence 422111111 1134556677888887653
No 13
>PLN02244 tocopherol O-methyltransferase
Probab=98.89 E-value=6e-09 Score=97.68 Aligned_cols=76 Identities=22% Similarity=0.325 Sum_probs=63.6
Q ss_pred cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecC
Q 024162 15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKL 92 (271)
Q Consensus 15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~ 92 (271)
.++.|++.++++.... ....++.|+++|+.++|+++++||+|++..+++|+++ ..++++++|+|||||+|++.++.
T Consensus 149 ~s~~~i~~a~~~~~~~--g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~ 225 (340)
T PLN02244 149 LSPVQAARANALAAAQ--GLSDKVSFQVADALNQPFEDGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTWC 225 (340)
T ss_pred CCHHHHHHHHHHHHhc--CCCCceEEEEcCcccCCCCCCCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEec
Confidence 4778888888764211 1224689999999999999999999999999999987 89999999999999999998864
No 14
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.89 E-value=4.9e-09 Score=93.56 Aligned_cols=81 Identities=19% Similarity=0.253 Sum_probs=67.3
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCCC
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLTS 94 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~~~ 94 (271)
++.|++.++++. ..+.++++|++.+|+++++||+|+++.++||+.+ ..++.+++|+|||||.|+++.+..+
T Consensus 73 s~~~l~~a~~~~--------~~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~ 144 (251)
T PRK10258 73 SPPMLAQARQKD--------AADHYLAGDIESLPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQG 144 (251)
T ss_pred CHHHHHHHHhhC--------CCCCEEEcCcccCcCCCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCC
Confidence 578888888775 2246788999999999999999999999999887 8999999999999999999998866
Q ss_pred CcccHHHHHH
Q 024162 95 DKGDVDKAIS 104 (271)
Q Consensus 95 ~~~e~~~~~~ 104 (271)
+..++...|.
T Consensus 145 ~~~el~~~~~ 154 (251)
T PRK10258 145 SLPELHQAWQ 154 (251)
T ss_pred chHHHHHHHH
Confidence 5555554443
No 15
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.80 E-value=3e-08 Score=93.08 Aligned_cols=122 Identities=18% Similarity=0.158 Sum_probs=85.4
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCCC
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLTS 94 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~~~ 94 (271)
++.|++.++++.. ..++.++.++++++++++++||+|++..+++++++ ..+|++++|+|||||++++......
T Consensus 146 S~~mL~~A~~k~~------~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p 219 (340)
T PLN02490 146 SPHQLAKAKQKEP------LKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGPVHP 219 (340)
T ss_pred CHHHHHHHHHhhh------ccCCeEEeccHHhCCCCCCceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEEecCc
Confidence 6788888887642 13577899999999999999999999999998887 8899999999999999988754321
Q ss_pred C--ccc-HHH------HHHHHHHHHHHcCCcchhhhhhccccC-----cc-eeEEEEEeeCCCc
Q 024162 95 D--KGD-VDK------AISALEGKLLLAGFLDAQRIQLKSVVP-----AE-VVSFGVKGKKPTW 143 (271)
Q Consensus 95 ~--~~e-~~~------~~~~l~~~l~laGF~~v~~~~~~~~~~-----~~-~~~~~i~a~KPs~ 143 (271)
. ... ... ..+++...+..+||..++.....+... .+ +....++++||.-
T Consensus 220 ~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~i~~~~~~~~~~~~~~~~~~v~~~k~~~ 283 (340)
T PLN02490 220 TFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKRIGPKWYRGVRRHGLIMGCSVTGVKPAS 283 (340)
T ss_pred chhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEEcChhhccccccccceeeEEEEEecccc
Confidence 0 000 000 124666778899999876543322111 11 1235678888764
No 16
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.77 E-value=6.1e-08 Score=85.20 Aligned_cols=75 Identities=23% Similarity=0.278 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCC
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLT 93 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~~ 93 (271)
++.|++.++++... ....++.++.++++.+++++++||+|++...++++++ ..++++++|+|||||++++.+...
T Consensus 79 s~~~~~~a~~~~~~---~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 154 (231)
T TIGR02752 79 SENMLSVGRQKVKD---AGLHNVELVHGNAMELPFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQ 154 (231)
T ss_pred CHHHHHHHHHHHHh---cCCCceEEEEechhcCCCCCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCC
Confidence 56888888876421 1224688999999999999999999999988998887 889999999999999999987643
No 17
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.62 E-value=2.4e-07 Score=90.23 Aligned_cols=99 Identities=18% Similarity=0.190 Sum_probs=74.1
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCCC
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLTS 94 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~~~ 94 (271)
++.|++.++++.. ....++.|.++++..+++++++||+|++..+++|+.+ ..++++++|+|||||+|++.++...
T Consensus 298 S~~~l~~A~~~~~----~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~ 373 (475)
T PLN02336 298 SVNMISFALERAI----GRKCSVEFEVADCTKKTYPDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCRS 373 (475)
T ss_pred CHHHHHHHHHHhh----cCCCceEEEEcCcccCCCCCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEeccC
Confidence 6788888887642 1224689999999999999999999999999999987 8999999999999999999987542
Q ss_pred Cc---ccHHH----------HHHHHHHHHHHcCCcch
Q 024162 95 DK---GDVDK----------AISALEGKLLLAGFLDA 118 (271)
Q Consensus 95 ~~---~e~~~----------~~~~l~~~l~laGF~~v 118 (271)
.. ..... ..+.+...+..+||..+
T Consensus 374 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF~~i 410 (475)
T PLN02336 374 PGTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFDDV 410 (475)
T ss_pred CCCCcHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeee
Confidence 11 01110 12244566777888765
No 18
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.55 E-value=1.1e-07 Score=88.76 Aligned_cols=77 Identities=17% Similarity=0.202 Sum_probs=64.8
Q ss_pred cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCC
Q 024162 15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLT 93 (271)
Q Consensus 15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~~ 93 (271)
.++.|++.++++.... ....++.+++++++++++.+++||+|++..+++|+.+ ..++++++|+|||||.|++.+...
T Consensus 161 ~s~~~i~~Ar~~~~~~--~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~nr 238 (322)
T PLN02396 161 AVDKNVKIARLHADMD--PVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEHVANPAEFCKSLSALTIPNGATVLSTINR 238 (322)
T ss_pred CCHHHHHHHHHHHHhc--CcccceeEEecCHHHhhhccCCCCEEEEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEECCc
Confidence 4788999998764211 1124689999999999998899999999999999987 999999999999999999998654
No 19
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.53 E-value=5.1e-07 Score=80.10 Aligned_cols=74 Identities=15% Similarity=0.224 Sum_probs=60.0
Q ss_pred cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEec
Q 024162 15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKK 91 (271)
Q Consensus 15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~~ 91 (271)
.++.|++.++++.... ....++.++++++..++++ .+|+|++.+++||+++ ..++++++|+|||||.|++.+.
T Consensus 87 ~s~~ml~~a~~~~~~~--~~~~~v~~~~~d~~~~~~~--~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 87 NSQPMVERCRQHIAAY--HSEIPVEILCNDIRHVEIK--NASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred CCHHHHHHHHHHHHhc--CCCCCeEEEECChhhCCCC--CCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 4789999998874211 1224688999999998876 4899999999999874 6799999999999999999986
Q ss_pred C
Q 024162 92 L 92 (271)
Q Consensus 92 ~ 92 (271)
.
T Consensus 163 ~ 163 (239)
T TIGR00740 163 F 163 (239)
T ss_pred c
Confidence 4
No 20
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.50 E-value=3.8e-07 Score=85.02 Aligned_cols=105 Identities=21% Similarity=0.263 Sum_probs=73.2
Q ss_pred cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCC
Q 024162 15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLT 93 (271)
Q Consensus 15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~~ 93 (271)
++..|+..++..... .....++.++.++++++|+ +++||+|++..++||..+ ..+|++++|+|||||.|++.++..
T Consensus 153 ~S~~~l~q~~a~~~~--~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i 229 (322)
T PRK15068 153 PSQLFLCQFEAVRKL--LGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVI 229 (322)
T ss_pred CCHHHHHHHHHHHHh--cCCCCCeEEEeCCHHHCCC-cCCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEe
Confidence 456666554432110 0112468999999999999 889999999999998877 899999999999999999876432
Q ss_pred CCcc--------cH---H-----HHHHHHHHHHHHcCCcchhhhh
Q 024162 94 SDKG--------DV---D-----KAISALEGKLLLAGFLDAQRIQ 122 (271)
Q Consensus 94 ~~~~--------e~---~-----~~~~~l~~~l~laGF~~v~~~~ 122 (271)
.... .. + .....+...|..+||.+++...
T Consensus 230 ~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i~~~~ 274 (322)
T PRK15068 230 DGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKDVRIVD 274 (322)
T ss_pred cCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCceEEEEe
Confidence 1000 00 0 0224667788899998876543
No 21
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.50 E-value=1.5e-07 Score=83.24 Aligned_cols=96 Identities=21% Similarity=0.290 Sum_probs=68.8
Q ss_pred CeEEEeccCCCC--CCCCCceeEEEec---cc-cccCChHHHHHHHHHhccCCcEEEEEecCCCCcccHHHHHHHHHHHH
Q 024162 37 QIITQASSLSQL--PVESFSIDTVLSI---SS-SHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKL 110 (271)
Q Consensus 37 ~v~~~~~d~e~l--p~~~~sfD~V~s~---~~-l~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~~~e~~~~~~~l~~~l 110 (271)
.|..+.+|+.++ .|+|+|||+|+.- ++ ..++...+++.|++|+|||||+++.+...++....-......+.+.|
T Consensus 186 ~i~iilGD~~e~V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RL 265 (287)
T COG2521 186 AIKIILGDAYEVVKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERL 265 (287)
T ss_pred ccEEecccHHHHHhcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHH
Confidence 467788888655 5899999999972 22 22455699999999999999999999887653211111223667789
Q ss_pred HHcCCcchhhhhhccccCcceeEEEEEeeCC
Q 024162 111 LLAGFLDAQRIQLKSVVPAEVVSFGVKGKKP 141 (271)
Q Consensus 111 ~laGF~~v~~~~~~~~~~~~~~~~~i~a~KP 141 (271)
...||..+..... .+.+.|.||
T Consensus 266 r~vGF~~v~~~~~---------~~gv~A~k~ 287 (287)
T COG2521 266 RRVGFEVVKKVRE---------ALGVVAVKP 287 (287)
T ss_pred HhcCceeeeeehh---------ccceEEecC
Confidence 9999998776653 345777765
No 22
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.46 E-value=1.1e-06 Score=76.62 Aligned_cols=73 Identities=23% Similarity=0.277 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCCC
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLTS 94 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~~~ 94 (271)
+..|++.++++.. .++.++.++++.+++++++||+|++..++||+.+ ..++.++.++|||||.|++.++...
T Consensus 67 ~~~~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~~ 139 (240)
T TIGR02072 67 SAGMLAQAKTKLS-------ENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFGPG 139 (240)
T ss_pred hHHHHHHHHHhcC-------CCCeEEecchhhCCCCCCceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence 5677777776642 3578899999999999999999999999999976 8999999999999999999987754
Q ss_pred C
Q 024162 95 D 95 (271)
Q Consensus 95 ~ 95 (271)
.
T Consensus 140 ~ 140 (240)
T TIGR02072 140 T 140 (240)
T ss_pred C
Confidence 3
No 23
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=98.44 E-value=7.5e-07 Score=73.47 Aligned_cols=73 Identities=25% Similarity=0.417 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCC--CCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecC
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLP--VESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKL 92 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp--~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~ 92 (271)
++.|++.++++... ....++.|.++++++++ ++ +.||+|++..+++++.+ ..+++++.|+||+||.+++.+..
T Consensus 37 s~~~i~~a~~~~~~---~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 37 SEEMIEYAKKRAKE---LGLDNIEFIQGDIEDLPQELE-EKFDIIISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp SHHHHHHHHHHHHH---TTSTTEEEEESBTTCGCGCSS-TTEEEEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred cHHHHHHhhccccc---ccccccceEEeehhccccccC-CCeeEEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 67888888886421 12247999999999988 66 89999999999999988 78999999999999999999876
No 24
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.42 E-value=1.4e-06 Score=77.95 Aligned_cols=74 Identities=19% Similarity=0.294 Sum_probs=60.3
Q ss_pred cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEec
Q 024162 15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKK 91 (271)
Q Consensus 15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~~ 91 (271)
+++.|++.++++.... ....++.++++++..+|++ .||+|+++.++|++++ ..++++++|+|||||.|++.+.
T Consensus 90 ~S~~ml~~A~~~~~~~--~~~~~v~~~~~d~~~~~~~--~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 90 NSPAMIERCRRHIDAY--KAPTPVDVIEGDIRDIAIE--NASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred CCHHHHHHHHHHHHhc--CCCCCeEEEeCChhhCCCC--CCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 5899999999885221 1224688999999988875 4999999999999875 6799999999999999999985
Q ss_pred C
Q 024162 92 L 92 (271)
Q Consensus 92 ~ 92 (271)
.
T Consensus 166 ~ 166 (247)
T PRK15451 166 F 166 (247)
T ss_pred c
Confidence 4
No 25
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.42 E-value=7e-07 Score=83.03 Aligned_cols=104 Identities=19% Similarity=0.224 Sum_probs=70.6
Q ss_pred cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCC
Q 024162 15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLT 93 (271)
Q Consensus 15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~~ 93 (271)
++..|+.+++..... ......+.+...+++++|.. .+||+|+++.+++|+.+ ..+|++++|+|||||.|++.+...
T Consensus 152 pS~~ml~q~~~~~~~--~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i 228 (314)
T TIGR00452 152 PTVLFLCQFEAVRKL--LDNDKRAILEPLGIEQLHEL-YAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVI 228 (314)
T ss_pred CCHHHHHHHHHHHHH--hccCCCeEEEECCHHHCCCC-CCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEe
Confidence 466677654432110 01124577788889998864 48999999999999887 899999999999999999976432
Q ss_pred CC-c-------ccHHH--------HHHHHHHHHHHcCCcchhhh
Q 024162 94 SD-K-------GDVDK--------AISALEGKLLLAGFLDAQRI 121 (271)
Q Consensus 94 ~~-~-------~e~~~--------~~~~l~~~l~laGF~~v~~~ 121 (271)
.. . ..... ....+...+..+||.+++..
T Consensus 229 ~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~V~i~ 272 (314)
T TIGR00452 229 DGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFENFRIL 272 (314)
T ss_pred cCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeEEEEE
Confidence 10 0 00000 12456677888999887654
No 26
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.41 E-value=5.1e-07 Score=80.97 Aligned_cols=66 Identities=20% Similarity=0.229 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecC
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKL 92 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~ 92 (271)
++.|++.++++. +.++++++++++ ++++||+|++..++||+++ ..++++++|+|||||+|++..+.
T Consensus 62 s~~~~~~a~~~~----------~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 62 SPEMVAAARERG----------VDARTGDVRDWK-PKPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred CHHHHHHHHhcC----------CcEEEcChhhCC-CCCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCC
Confidence 678888887542 567889998875 5679999999999999987 89999999999999999998654
No 27
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.39 E-value=4e-06 Score=73.22 Aligned_cols=75 Identities=25% Similarity=0.326 Sum_probs=60.5
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecC
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKL 92 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~ 92 (271)
++.+++.++++.... ....++.+..+++..++++.++||+|++...+|++.+ ..+|.++.++|+|||++++.+..
T Consensus 85 s~~~~~~a~~~~~~~--~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~ 160 (239)
T PRK00216 85 SEGMLAVGREKLRDL--GLSGNVEFVQGDAEALPFPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFS 160 (239)
T ss_pred CHHHHHHHHHhhccc--ccccCeEEEecccccCCCCCCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEec
Confidence 567777777764211 1234688899999998888889999999888888877 89999999999999999988754
No 28
>PRK08317 hypothetical protein; Provisional
Probab=98.38 E-value=2.8e-06 Score=73.85 Aligned_cols=73 Identities=26% Similarity=0.361 Sum_probs=60.5
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecC
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKL 92 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~ 92 (271)
++.+++.++++.. ....++.+..+++..+++++++||+|++...++++.+ ..++++++++|||||.+++.+..
T Consensus 53 ~~~~~~~a~~~~~----~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 53 SEAMLALAKERAA----GLGPNVEFVRGDADGLPFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred CHHHHHHHHHHhh----CCCCceEEEecccccCCCCCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecC
Confidence 5677777777621 1235688999999999999999999999999999877 88999999999999999988753
No 29
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.35 E-value=1.5e-06 Score=76.03 Aligned_cols=103 Identities=15% Similarity=0.112 Sum_probs=73.3
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCCC
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLTS 94 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~~~ 94 (271)
++.+++.++++.... ....++.+...++...|++ ++||+|++..+++++.+ ..++++++++|||||++++.+....
T Consensus 32 s~~~~~~a~~~~~~~--gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 108 (224)
T smart00828 32 SPEQAEVGRERIRAL--GLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHHIKDKMDLFSNISRHLKDGGHLVLADFIAN 108 (224)
T ss_pred CHHHHHHHHHHHHhc--CCCcceEEEecccccCCCC-CCCCEeehHHHHHhCCCHHHHHHHHHHHcCCCCEEEEEEcccc
Confidence 788888888874211 1234688888998777775 48999999999999887 8999999999999999999886421
Q ss_pred Cc---c--cHH---HHHHHHHHHHHHcCCcchhhh
Q 024162 95 DK---G--DVD---KAISALEGKLLLAGFLDAQRI 121 (271)
Q Consensus 95 ~~---~--e~~---~~~~~l~~~l~laGF~~v~~~ 121 (271)
.. . ... .....+...+..+||..+...
T Consensus 109 ~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~ 143 (224)
T smart00828 109 LLSAIEHEETTSYLVTREEWAELLARNNLRVVEGV 143 (224)
T ss_pred cCccccccccccccCCHHHHHHHHHHCCCeEEEeE
Confidence 10 0 000 012345566788999876544
No 30
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.31 E-value=1.3e-06 Score=79.26 Aligned_cols=67 Identities=24% Similarity=0.349 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecCCCC
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSD 95 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~ 95 (271)
+..|++.++++. .++.|.++++.++|+++++||+|++++.. ..+.|++|+|||||+|++..+...+
T Consensus 121 s~~~l~~A~~~~--------~~~~~~~~d~~~lp~~~~sfD~I~~~~~~------~~~~e~~rvLkpgG~li~~~p~~~~ 186 (272)
T PRK11088 121 SKVAIKYAAKRY--------PQVTFCVASSHRLPFADQSLDAIIRIYAP------CKAEELARVVKPGGIVITVTPGPRH 186 (272)
T ss_pred CHHHHHHHHHhC--------CCCeEEEeecccCCCcCCceeEEEEecCC------CCHHHHHhhccCCCEEEEEeCCCcc
Confidence 678888887664 45788999999999999999999987542 3468999999999999999877544
Q ss_pred c
Q 024162 96 K 96 (271)
Q Consensus 96 ~ 96 (271)
.
T Consensus 187 l 187 (272)
T PRK11088 187 L 187 (272)
T ss_pred h
Confidence 3
No 31
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.31 E-value=7.9e-07 Score=68.31 Aligned_cols=65 Identities=28% Similarity=0.414 Sum_probs=54.1
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEec-cccccCCh---HHHHHHHHHhccCCc
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSI-SSSHELPG---DQLLEEISRVLKPGG 84 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~-~~l~~~~~---~~~L~ei~RvLKPGG 84 (271)
++.|++.++++... .+.++.|+++|+.++++.+++||+|++. .+++|+.+ ..++++++++|||||
T Consensus 33 s~~~l~~~~~~~~~----~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 33 SPEMLELAKKRFSE----DGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp -HHHHHHHHHHSHH----TTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred CHHHHHHHHHhchh----cCCceEEEECCHhHCcccCCCeeEEEEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 78999999988632 2358899999999999999999999995 44888875 889999999999998
No 32
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.30 E-value=9.2e-07 Score=79.37 Aligned_cols=77 Identities=10% Similarity=0.171 Sum_probs=61.9
Q ss_pred cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCC-CCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecC
Q 024162 15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLP-VESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKL 92 (271)
Q Consensus 15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp-~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~ 92 (271)
.++.|++.++++.... ....++.++++++.+++ +.+++||+|++..+++|+.+ ..++++++|+|||||+|++..+.
T Consensus 74 ~s~~~l~~a~~~~~~~--g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n 151 (255)
T PRK11036 74 LSAEMIQRAKQAAEAK--GVSDNMQFIHCAAQDIAQHLETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYN 151 (255)
T ss_pred CCHHHHHHHHHHHHhc--CCccceEEEEcCHHHHhhhcCCCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEEC
Confidence 4788999988874211 12246889999998774 67789999999999999976 88999999999999999988765
Q ss_pred C
Q 024162 93 T 93 (271)
Q Consensus 93 ~ 93 (271)
.
T Consensus 152 ~ 152 (255)
T PRK11036 152 A 152 (255)
T ss_pred c
Confidence 3
No 33
>PRK05785 hypothetical protein; Provisional
Probab=98.29 E-value=1.5e-06 Score=77.05 Aligned_cols=58 Identities=21% Similarity=0.224 Sum_probs=50.9
Q ss_pred cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCC
Q 024162 15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPG 83 (271)
Q Consensus 15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPG 83 (271)
.++.|++.++++. .+++++++.+|+++++||+|++.+++|++.+ +.+++|++|+|||.
T Consensus 82 ~S~~Ml~~a~~~~-----------~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 82 YAENMLKMNLVAD-----------DKVVGSFEALPFRDKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQ 140 (226)
T ss_pred CCHHHHHHHHhcc-----------ceEEechhhCCCCCCCEEEEEecChhhccCCHHHHHHHHHHHhcCc
Confidence 4889999888653 2467899999999999999999999999987 89999999999994
No 34
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.26 E-value=1.2e-05 Score=69.37 Aligned_cols=72 Identities=26% Similarity=0.347 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecC
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKL 92 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~ 92 (271)
++.+++.++++.. ...++.++.+++.+++++.+.||+|++...+++..+ ..+++++.++|+|||++++.+..
T Consensus 73 ~~~~~~~~~~~~~-----~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 145 (223)
T TIGR01934 73 SSEMLEVAKKKSE-----LPLNIEFIQADAEALPFEDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFS 145 (223)
T ss_pred CHHHHHHHHHHhc-----cCCCceEEecchhcCCCCCCcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEec
Confidence 4677777776642 224678889999999988889999999988888877 89999999999999999998754
No 35
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.25 E-value=2.7e-06 Score=76.06 Aligned_cols=69 Identities=19% Similarity=0.282 Sum_probs=57.6
Q ss_pred cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecC
Q 024162 15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKL 92 (271)
Q Consensus 15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~ 92 (271)
.++.|++.++++. .++.++.+++..+. +..+||+|+++.++||+.+ ..++++++|+|||||+|++..+.
T Consensus 63 ~s~~~i~~a~~~~--------~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~~ 132 (258)
T PRK01683 63 SSPAMLAEARSRL--------PDCQFVEADIASWQ-PPQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMPD 132 (258)
T ss_pred CCHHHHHHHHHhC--------CCCeEEECchhccC-CCCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECCC
Confidence 4678888888774 34678889988764 4569999999999999987 89999999999999999997543
No 36
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.22 E-value=3.9e-06 Score=72.67 Aligned_cols=71 Identities=21% Similarity=0.246 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEe
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYK 90 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~ 90 (271)
++.|++.++++... ....++.+..+++..++++ .+||+|++..++|+++. ..++++++|+|||||++++..
T Consensus 61 S~~~i~~a~~~~~~---~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~ 134 (197)
T PRK11207 61 NPMSIANLERIKAA---ENLDNLHTAVVDLNNLTFD-GEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVA 134 (197)
T ss_pred CHHHHHHHHHHHHH---cCCCcceEEecChhhCCcC-CCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 67788888876421 1113478888899888775 57999999999888763 789999999999999976543
No 37
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.18 E-value=3.7e-06 Score=76.26 Aligned_cols=55 Identities=16% Similarity=0.210 Sum_probs=49.5
Q ss_pred CeEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEec
Q 024162 37 QIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKK 91 (271)
Q Consensus 37 ~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~~ 91 (271)
.|.|.++++.+.+++.++||+|++.++++|+++ ..++++++++|+|||+|++-..
T Consensus 186 ~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 186 RVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred cCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECc
Confidence 689999999998888899999999999999974 5799999999999999998653
No 38
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.17 E-value=1.4e-06 Score=77.56 Aligned_cols=75 Identities=13% Similarity=0.248 Sum_probs=64.4
Q ss_pred cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCC
Q 024162 15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLT 93 (271)
Q Consensus 15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~~ 93 (271)
.++.+++.|+.++. .....+.|.+..++++....++||+|++.-+++|+++ +.+++.+.+.+||||.+++++...
T Consensus 89 ~se~~I~~Ak~ha~----e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinr 164 (243)
T COG2227 89 ASEKPIEVAKLHAL----ESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTINR 164 (243)
T ss_pred CChHHHHHHHHhhh----hccccccchhhhHHHHHhcCCCccEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEecccc
Confidence 37788999998852 2335678999999998877789999999999999998 889999999999999999999874
No 39
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.16 E-value=1.5e-06 Score=76.97 Aligned_cols=81 Identities=16% Similarity=0.071 Sum_probs=67.8
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCCC
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLTS 94 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~~~ 94 (271)
|..|++.++..+. ....+.+.++|-|.++|.+++||+|+++.++||..+ +..+.++..+|||+|.|+-+..+.+
T Consensus 104 S~~M~~s~~~~qd-----p~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~NdLPg~m~~ck~~lKPDg~Fiasmlggd 178 (325)
T KOG2940|consen 104 SYDMIKSCRDAQD-----PSIETSYFVGDEEFLDFKENSVDLIISSLSLHWTNDLPGSMIQCKLALKPDGLFIASMLGGD 178 (325)
T ss_pred chHHHHHhhccCC-----CceEEEEEecchhcccccccchhhhhhhhhhhhhccCchHHHHHHHhcCCCccchhHHhccc
Confidence 5677777776643 235677889999999999999999999999999988 9999999999999999999888766
Q ss_pred CcccHHH
Q 024162 95 DKGDVDK 101 (271)
Q Consensus 95 ~~~e~~~ 101 (271)
++.+++.
T Consensus 179 TLyELR~ 185 (325)
T KOG2940|consen 179 TLYELRC 185 (325)
T ss_pred cHHHHHH
Confidence 6555554
No 40
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.13 E-value=1.1e-05 Score=70.15 Aligned_cols=93 Identities=15% Similarity=0.018 Sum_probs=66.4
Q ss_pred cHHHHHHHHHHhCchhhhcCCCCeEEEeccC-CCCC--CCCCceeEEEeccccccCC---------hHHHHHHHHHhccC
Q 024162 15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSL-SQLP--VESFSIDTVLSISSSHELP---------GDQLLEEISRVLKP 82 (271)
Q Consensus 15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~-e~lp--~~~~sfD~V~s~~~l~~~~---------~~~~L~ei~RvLKP 82 (271)
.++.|++.++++.... ...++.++++++ +.++ +++++||+|++.+...|.. ...++++++|+|||
T Consensus 72 ~s~~~i~~a~~~~~~~---~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~Lkp 148 (202)
T PRK00121 72 VHEPGVGKALKKIEEE---GLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKP 148 (202)
T ss_pred echHHHHHHHHHHHHc---CCCCEEEEecCHHHHHHHHcCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCC
Confidence 3677888888764211 124688999999 7777 7888999999876544432 26799999999999
Q ss_pred CcEEEEEecCCCCcccHHHHHHHHHHHHHHcCCcc
Q 024162 83 GGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLD 117 (271)
Q Consensus 83 GG~l~i~~~~~~~~~e~~~~~~~l~~~l~laGF~~ 117 (271)
||.|++..... .....+...+..+||..
T Consensus 149 gG~l~i~~~~~-------~~~~~~~~~~~~~g~~~ 176 (202)
T PRK00121 149 GGEIHFATDWE-------GYAEYMLEVLSAEGGFL 176 (202)
T ss_pred CCEEEEEcCCH-------HHHHHHHHHHHhCcccc
Confidence 99999987542 12234556677778754
No 41
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=98.09 E-value=3.7e-05 Score=66.37 Aligned_cols=90 Identities=17% Similarity=0.168 Sum_probs=64.5
Q ss_pred cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCC
Q 024162 15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLT 93 (271)
Q Consensus 15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~~ 93 (271)
.++.|++.++++.... ...++.++.+++++++. .++||+|++.. +.+ +.++++++++|||||+|++.....
T Consensus 77 ~s~~~l~~A~~~~~~~---~l~~i~~~~~d~~~~~~-~~~fDlV~~~~----~~~~~~~l~~~~~~LkpGG~lv~~~~~~ 148 (187)
T PRK00107 77 SLGKKIAFLREVAAEL---GLKNVTVVHGRAEEFGQ-EEKFDVVTSRA----VASLSDLVELCLPLLKPGGRFLALKGRD 148 (187)
T ss_pred CcHHHHHHHHHHHHHc---CCCCEEEEeccHhhCCC-CCCccEEEEcc----ccCHHHHHHHHHHhcCCCeEEEEEeCCC
Confidence 4788888888764221 12348999999999887 77999999864 233 789999999999999999987542
Q ss_pred CCcccHHHHHHHHHHHHHHcCCcchhh
Q 024162 94 SDKGDVDKAISALEGKLLLAGFLDAQR 120 (271)
Q Consensus 94 ~~~~e~~~~~~~l~~~l~laGF~~v~~ 120 (271)
.. ..+......+|..-...
T Consensus 149 -----~~---~~l~~~~~~~~~~~~~~ 167 (187)
T PRK00107 149 -----PE---EEIAELPKALGGKVEEV 167 (187)
T ss_pred -----hH---HHHHHHHHhcCceEeee
Confidence 11 13445556668774433
No 42
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=98.08 E-value=1.4e-05 Score=61.81 Aligned_cols=73 Identities=26% Similarity=0.321 Sum_probs=54.6
Q ss_pred cHHHHHHHHHHhCchhhhcCCCCeEEEeccC-CCCCCCCCceeEEEecc-ccccCC---h-HHHHHHHHHhccCCcEEEE
Q 024162 15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSL-SQLPVESFSIDTVLSIS-SSHELP---G-DQLLEEISRVLKPGGTILI 88 (271)
Q Consensus 15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~-e~lp~~~~sfD~V~s~~-~l~~~~---~-~~~L~ei~RvLKPGG~l~i 88 (271)
.++.|++.++++... .....++.++++++ ....+ ...||+|++.. .++++. . ..+++++++.|+|||+|++
T Consensus 33 ~s~~~~~~a~~~~~~--~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi 109 (112)
T PF12847_consen 33 ISPEMLEIARERAAE--EGLSDRITFVQGDAEFDPDF-LEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVI 109 (112)
T ss_dssp SSHHHHHHHHHHHHH--TTTTTTEEEEESCCHGGTTT-SSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHh--cCCCCCeEEEECccccCccc-CCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEE
Confidence 478899999987521 12347899999999 33333 34699999988 555332 2 7899999999999999998
Q ss_pred Ee
Q 024162 89 YK 90 (271)
Q Consensus 89 ~~ 90 (271)
.+
T Consensus 110 ~~ 111 (112)
T PF12847_consen 110 NT 111 (112)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 43
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.08 E-value=2.9e-05 Score=71.44 Aligned_cols=72 Identities=13% Similarity=0.169 Sum_probs=55.2
Q ss_pred HHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEecC
Q 024162 17 SAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKKL 92 (271)
Q Consensus 17 ~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~~~ 92 (271)
+.|++.++++.... ....+|.++.+|+...+++. +|+|+....+|++.+ ..+|++++++|||||+|++.+..
T Consensus 182 ~~~~~~a~~~~~~~--gl~~rv~~~~~d~~~~~~~~--~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~ 256 (306)
T TIGR02716 182 PGAIDLVNENAAEK--GVADRMRGIAVDIYKESYPE--ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMV 256 (306)
T ss_pred HHHHHHHHHHHHhC--CccceEEEEecCccCCCCCC--CCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 46788887764211 12246899999997766654 699998888888765 46999999999999999999863
No 44
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.07 E-value=9.6e-07 Score=67.33 Aligned_cols=34 Identities=38% Similarity=0.622 Sum_probs=24.0
Q ss_pred CceeEEEeccccccCCh-HHHHHHHHHhccCCcEE
Q 024162 53 FSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTI 86 (271)
Q Consensus 53 ~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l 86 (271)
++||+|+++.++||+.+ ..+++.++++|||||+|
T Consensus 65 ~~fD~V~~~~vl~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 65 ESFDLVVASNVLHHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ---SEEEEE-TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred cccceehhhhhHhhhhhHHHHHHHHHHHcCCCCCC
Confidence 69999999999999977 99999999999999986
No 45
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.07 E-value=1.5e-05 Score=77.65 Aligned_cols=101 Identities=15% Similarity=0.139 Sum_probs=70.9
Q ss_pred cHHHHHHHHHHhCchhhhcCCCCeEEEeccCC--CCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEE
Q 024162 15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLS--QLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIY 89 (271)
Q Consensus 15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e--~lp~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~ 89 (271)
.+..|++.+++... ...++.++++++. .+|+++++||+|++..++||+++ ..++++++|+|||||++++.
T Consensus 67 ~s~~~l~~a~~~~~-----~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~ 141 (475)
T PLN02336 67 FIESVIKKNESING-----HYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFR 141 (475)
T ss_pred CCHHHHHHHHHHhc-----cCCceEEEEecccccccCCCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 46677776655431 1256888999986 57888999999999999999876 68999999999999999998
Q ss_pred ecCCCCcc--------cHHHHHHHHHHHHHHcCCcchhh
Q 024162 90 KKLTSDKG--------DVDKAISALEGKLLLAGFLDAQR 120 (271)
Q Consensus 90 ~~~~~~~~--------e~~~~~~~l~~~l~laGF~~v~~ 120 (271)
+....... ..........+.+..+||.....
T Consensus 142 d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 180 (475)
T PLN02336 142 ESCFHQSGDSKRKNNPTHYREPRFYTKVFKECHTRDEDG 180 (475)
T ss_pred eccCCCCCcccccCCCCeecChHHHHHHHHHheeccCCC
Confidence 75422110 11111234455678888886543
No 46
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.06 E-value=1.6e-05 Score=68.67 Aligned_cols=71 Identities=17% Similarity=0.227 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEec
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKK 91 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~~ 91 (271)
++.|++.++++... .+..+.+...++...+++ ++||+|++..++|+++. ..++++++|+|||||++++.++
T Consensus 61 s~~~l~~a~~~~~~----~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~ 134 (195)
T TIGR00477 61 NPASIASVLDMKAR----ENLPLRTDAYDINAAALN-EDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAA 134 (195)
T ss_pred CHHHHHHHHHHHHH----hCCCceeEeccchhcccc-CCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEe
Confidence 56788877766421 123467777888776765 57999999988888863 7899999999999999777654
No 47
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.01 E-value=5e-06 Score=67.99 Aligned_cols=49 Identities=31% Similarity=0.518 Sum_probs=44.2
Q ss_pred CCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCC
Q 024162 45 LSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLT 93 (271)
Q Consensus 45 ~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~~ 93 (271)
....++++++||+|+++.+++|+++ ..+|++++++|||||.+++.++..
T Consensus 69 ~~~~~~~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 69 AQDPPFPDGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp CHTHHCHSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred hhhhhccccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 3455677899999999999999998 999999999999999999999874
No 48
>PRK04266 fibrillarin; Provisional
Probab=97.98 E-value=8.2e-05 Score=66.12 Aligned_cols=83 Identities=18% Similarity=0.183 Sum_probs=54.0
Q ss_pred CCeEEEeccCCCC----CCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEE------ecCCCCcccHHHHHHH
Q 024162 36 PQIITQASSLSQL----PVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIY------KKLTSDKGDVDKAISA 105 (271)
Q Consensus 36 ~~v~~~~~d~e~l----p~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~------~~~~~~~~e~~~~~~~ 105 (271)
.++.++.+++... ++. ++||+|++..... .....++++++|+|||||+|++. ++.. ...+..+.
T Consensus 120 ~nv~~i~~D~~~~~~~~~l~-~~~D~i~~d~~~p-~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~----~~~~~~~~ 193 (226)
T PRK04266 120 KNIIPILADARKPERYAHVV-EKVDVIYQDVAQP-NQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTK----DPKEIFKE 193 (226)
T ss_pred CCcEEEECCCCCcchhhhcc-ccCCEEEECCCCh-hHHHHHHHHHHHhcCCCcEEEEEEecccccCcC----CHHHHHHH
Confidence 4577888888642 233 5699999643211 01145689999999999999993 3332 11222334
Q ss_pred HHHHHHHcCCcchhhhhhc
Q 024162 106 LEGKLLLAGFLDAQRIQLK 124 (271)
Q Consensus 106 l~~~l~laGF~~v~~~~~~ 124 (271)
....+..+||..++.....
T Consensus 194 ~~~~l~~aGF~~i~~~~l~ 212 (226)
T PRK04266 194 EIRKLEEGGFEILEVVDLE 212 (226)
T ss_pred HHHHHHHcCCeEEEEEcCC
Confidence 5578889999988776543
No 49
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=97.96 E-value=2.1e-05 Score=70.89 Aligned_cols=77 Identities=25% Similarity=0.306 Sum_probs=60.2
Q ss_pred EEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecCCCCcccHHHHHHHHHHHHHHcCCcchh
Q 024162 40 TQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQ 119 (271)
Q Consensus 40 ~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~~~e~~~~~~~l~~~l~laGF~~v~ 119 (271)
.+..|+.++|++++|.|+++...++.-..-..++.|++|||||||.|+|.+...+. .+. ..+.+.+...||-..+
T Consensus 214 V~~cDm~~vPl~d~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG~l~IAEv~SRf-~dv----~~f~r~l~~lGF~~~~ 288 (325)
T KOG3045|consen 214 VIACDMRNVPLEDESVDVAVFCLSLMGTNLADFIKEANRILKPGGLLYIAEVKSRF-SDV----KGFVRALTKLGFDVKH 288 (325)
T ss_pred eeeccccCCcCccCcccEEEeeHhhhcccHHHHHHHHHHHhccCceEEEEehhhhc-ccH----HHHHHHHHHcCCeeee
Confidence 46689999999999999998876655444489999999999999999999976431 122 2467889999998655
Q ss_pred hh
Q 024162 120 RI 121 (271)
Q Consensus 120 ~~ 121 (271)
..
T Consensus 289 ~d 290 (325)
T KOG3045|consen 289 KD 290 (325)
T ss_pred hh
Confidence 43
No 50
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=97.95 E-value=1.6e-05 Score=69.65 Aligned_cols=75 Identities=25% Similarity=0.309 Sum_probs=52.0
Q ss_pred EeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecCCCCcccHHHHHHHHHHHHHHcCCcchhh
Q 024162 41 QASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQR 120 (271)
Q Consensus 41 ~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~~~e~~~~~~~l~~~l~laGF~~v~~ 120 (271)
.++|+.++|++++++|+++...++....=..++.|.+|+|||||.|.|.+...+- ... +.+.+.+..-||.....
T Consensus 109 tacdia~vPL~~~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAEV~SRf-~~~----~~F~~~~~~~GF~~~~~ 183 (219)
T PF05148_consen 109 TACDIANVPLEDESVDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIAEVKSRF-ENV----KQFIKALKKLGFKLKSK 183 (219)
T ss_dssp EES-TTS-S--TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEEEGGG--S-H----HHHHHHHHCTTEEEEEE
T ss_pred EEecCccCcCCCCceeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEEecccC-cCH----HHHHHHHHHCCCeEEec
Confidence 5689999999999999999877665554489999999999999999999986421 122 35667788889987654
No 51
>PRK06922 hypothetical protein; Provisional
Probab=97.95 E-value=1.9e-05 Score=79.56 Aligned_cols=73 Identities=26% Similarity=0.307 Sum_probs=58.5
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCC--CCCCceeEEEeccccccCC-------------h-HHHHHHHHHh
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLP--VESFSIDTVLSISSSHELP-------------G-DQLLEEISRV 79 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp--~~~~sfD~V~s~~~l~~~~-------------~-~~~L~ei~Rv 79 (271)
++.|++.++++.. ..+.++.++++++.++| +++++||+|+++..+|++. + ..+|++++|+
T Consensus 451 S~~MLe~Ararl~----~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RV 526 (677)
T PRK06922 451 SENVIDTLKKKKQ----NEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEV 526 (677)
T ss_pred CHHHHHHHHHHhh----hcCCCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHH
Confidence 6778888887642 12246778889998888 8899999999988887652 2 7899999999
Q ss_pred ccCCcEEEEEecC
Q 024162 80 LKPGGTILIYKKL 92 (271)
Q Consensus 80 LKPGG~l~i~~~~ 92 (271)
|||||++++.+..
T Consensus 527 LKPGGrLII~D~v 539 (677)
T PRK06922 527 LKPGGRIIIRDGI 539 (677)
T ss_pred cCCCcEEEEEeCc
Confidence 9999999999853
No 52
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=97.91 E-value=5.2e-05 Score=65.40 Aligned_cols=74 Identities=16% Similarity=0.125 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCC---CCCCceeEEEeccccccCC---------hHHHHHHHHHhccCC
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLP---VESFSIDTVLSISSSHELP---------GDQLLEEISRVLKPG 83 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp---~~~~sfD~V~s~~~l~~~~---------~~~~L~ei~RvLKPG 83 (271)
+..|++.++++... ....++.++++++..++ +++++||.|++++...|.. ...++++++|+||||
T Consensus 49 ~~~~l~~a~~~~~~---~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~Lkpg 125 (194)
T TIGR00091 49 HTPIVLAANNKANK---LGLKNLHVLCGDANELLDKFFPDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKG 125 (194)
T ss_pred eHHHHHHHHHHHHH---hCCCCEEEEccCHHHHHHhhCCCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCC
Confidence 57777777766421 11247899999997654 5667999999977554432 157999999999999
Q ss_pred cEEEEEecC
Q 024162 84 GTILIYKKL 92 (271)
Q Consensus 84 G~l~i~~~~ 92 (271)
|.|++.+..
T Consensus 126 G~l~~~td~ 134 (194)
T TIGR00091 126 GVIHFKTDN 134 (194)
T ss_pred CEEEEEeCC
Confidence 999998754
No 53
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=97.91 E-value=6.4e-05 Score=64.42 Aligned_cols=94 Identities=19% Similarity=0.169 Sum_probs=63.3
Q ss_pred cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecCCC
Q 024162 15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTS 94 (271)
Q Consensus 15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~ 94 (271)
.++.|++.+++..+.. ...++.++++++++++ ..++||+|++.. +++ -..+++.++|+|||||++++.....
T Consensus 74 ~s~~~~~~a~~~~~~~---~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-~~~--~~~~~~~~~~~LkpgG~lvi~~~~~- 145 (181)
T TIGR00138 74 SNHKKVAFLREVKAEL---GLNNVEIVNGRAEDFQ-HEEQFDVITSRA-LAS--LNVLLELTLNLLKVGGYFLAYKGKK- 145 (181)
T ss_pred CcHHHHHHHHHHHHHh---CCCCeEEEecchhhcc-ccCCccEEEehh-hhC--HHHHHHHHHHhcCCCCEEEEEcCCC-
Confidence 4667777777653211 1135899999999875 367999999865 222 2678899999999999999885431
Q ss_pred CcccHHHHHHHHHHHHHHcCCcchhh
Q 024162 95 DKGDVDKAISALEGKLLLAGFLDAQR 120 (271)
Q Consensus 95 ~~~e~~~~~~~l~~~l~laGF~~v~~ 120 (271)
. .. .+..+...+...||..+..
T Consensus 146 ~---~~-~~~~~~e~~~~~~~~~~~~ 167 (181)
T TIGR00138 146 Y---LD-EIEEAKRKCQVLGVEPLEV 167 (181)
T ss_pred c---HH-HHHHHHHhhhhcCceEeec
Confidence 1 11 1224445667788886654
No 54
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=97.89 E-value=4.8e-05 Score=69.57 Aligned_cols=70 Identities=17% Similarity=0.227 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEe
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYK 90 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~ 90 (271)
++.|++.++++... .+.++.+...++...++ +++||+|++..++|+++. ..++++++|+|+|||++++..
T Consensus 151 s~~ai~~~~~~~~~----~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 151 NQQSLENLQEIAEK----ENLNIRTGLYDINSASI-QEEYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred CHHHHHHHHHHHHH----cCCceEEEEechhcccc-cCCccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 56777777766421 22467888888877666 678999999999998863 789999999999999977654
No 55
>PTZ00146 fibrillarin; Provisional
Probab=97.87 E-value=0.00028 Score=65.00 Aligned_cols=111 Identities=14% Similarity=0.124 Sum_probs=69.4
Q ss_pred cEEEEecCCcccHHHHHHHHHHhCchhhhcCCCCeEEEeccCCC---CCCCCCceeEEEeccccccCCh-HHHHHHHHHh
Q 024162 4 AVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQ---LPVESFSIDTVLSISSSHELPG-DQLLEEISRV 79 (271)
Q Consensus 4 ~vl~~td~~~~~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~---lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~Rv 79 (271)
+.++.+|.+....+.|++.++.+ .+|.++.+|+.. +.+...+||+|++... ...+ ..++.+++|+
T Consensus 158 G~VyAVD~s~r~~~dLl~~ak~r---------~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dva--~pdq~~il~~na~r~ 226 (293)
T PTZ00146 158 GVVYAVEFSHRSGRDLTNMAKKR---------PNIVPIIEDARYPQKYRMLVPMVDVIFADVA--QPDQARIVALNAQYF 226 (293)
T ss_pred CEEEEEECcHHHHHHHHHHhhhc---------CCCEEEECCccChhhhhcccCCCCEEEEeCC--CcchHHHHHHHHHHh
Confidence 45677776644455677666544 346777888753 2233458999998664 2223 5677799999
Q ss_pred ccCCcEEEEEecCCCC-c-ccHHHHHHHHHHHHHHcCCcchhhhhhcc
Q 024162 80 LKPGGTILIYKKLTSD-K-GDVDKAISALEGKLLLAGFLDAQRIQLKS 125 (271)
Q Consensus 80 LKPGG~l~i~~~~~~~-~-~e~~~~~~~l~~~l~laGF~~v~~~~~~~ 125 (271)
|||||+|++....... . ......+++-...|..+||..++.....|
T Consensus 227 LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~~~e~v~L~P 274 (293)
T PTZ00146 227 LKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKPKEQLTLEP 274 (293)
T ss_pred ccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCceEEEEecCC
Confidence 9999999994322111 1 12222222223678899999887776544
No 56
>PLN03075 nicotianamine synthase; Provisional
Probab=97.87 E-value=4.1e-05 Score=70.58 Aligned_cols=73 Identities=10% Similarity=0.192 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCC--h-HHHHHHHHHhccCCcEEEEEe
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP--G-DQLLEEISRVLKPGGTILIYK 90 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~--~-~~~L~ei~RvLKPGG~l~i~~ 90 (271)
++.+++.||+..... .....+|.|.++|+.+++-..+.||+|++. +++++. + ..++.++++.|+|||.|++..
T Consensus 158 d~~ai~~Ar~~~~~~-~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 158 DPSANDVARRLVSSD-PDLSKRMFFHTADVMDVTESLKEYDVVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred CHHHHHHHHHHhhhc-cCccCCcEEEECchhhcccccCCcCEEEEe-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 678888888875211 122356999999998764345789999999 777773 3 999999999999999999987
No 57
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=97.83 E-value=7.9e-05 Score=64.68 Aligned_cols=78 Identities=19% Similarity=0.234 Sum_probs=61.3
Q ss_pred EEEecCCcccHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccC
Q 024162 6 LALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKP 82 (271)
Q Consensus 6 l~~td~~~~~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKP 82 (271)
..+||.+...++.+.+++++.+ ..|.+.+.|++...++ ..||+|++..++++++. +.++..|...++|
T Consensus 55 VtAvD~s~~al~~l~~~a~~~~--------l~i~~~~~Dl~~~~~~-~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~p 125 (192)
T PF03848_consen 55 VTAVDISPVALEKLQRLAEEEG--------LDIRTRVADLNDFDFP-EEYDFIVSTVVFMFLQRELRPQIIENMKAATKP 125 (192)
T ss_dssp EEEEESSHHHHHHHHHHHHHTT---------TEEEEE-BGCCBS-T-TTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEE
T ss_pred EEEEECCHHHHHHHHHHHhhcC--------ceeEEEEecchhcccc-CCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCC
Confidence 3567888888888777777655 5689999999988885 68999999888888875 7899999999999
Q ss_pred CcEEEEEecC
Q 024162 83 GGTILIYKKL 92 (271)
Q Consensus 83 GG~l~i~~~~ 92 (271)
||.+++....
T Consensus 126 GG~~li~~~~ 135 (192)
T PF03848_consen 126 GGYNLIVTFM 135 (192)
T ss_dssp EEEEEEEEEB
T ss_pred cEEEEEEEec
Confidence 9999886643
No 58
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=97.77 E-value=9.1e-05 Score=64.35 Aligned_cols=71 Identities=14% Similarity=0.148 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh----HHHHHHHHHhccCCcEEEEEec
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG----DQLLEEISRVLKPGGTILIYKK 91 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~----~~~L~ei~RvLKPGG~l~i~~~ 91 (271)
++..++.+|++-.. .++|.|+++++... .+++.||+|+.+-+++++.+ ..++..+...|+|||.|++-.+
T Consensus 74 s~~Al~~Ar~Rl~~-----~~~V~~~~~dvp~~-~P~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 74 SPRALARARERLAG-----LPHVEWIQADVPEF-WPEGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp -HHHHHHHHHHTTT------SSEEEEES-TTT----SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CHHHHHHHHHhcCC-----CCCeEEEECcCCCC-CCCCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 56678888888532 26899999998664 57899999999999999964 5688999999999999999876
Q ss_pred C
Q 024162 92 L 92 (271)
Q Consensus 92 ~ 92 (271)
.
T Consensus 148 r 148 (201)
T PF05401_consen 148 R 148 (201)
T ss_dssp -
T ss_pred c
Confidence 4
No 59
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=97.77 E-value=0.00011 Score=63.87 Aligned_cols=73 Identities=16% Similarity=0.272 Sum_probs=57.5
Q ss_pred HHHHHHHHHHhCchhhhcCCC-CeEEEeccCCCCCCC-CCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecC
Q 024162 16 VSAVLNAIRDLGDEAVEQCDP-QIITQASSLSQLPVE-SFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKL 92 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~-~v~~~~~d~e~lp~~-~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~ 92 (271)
+..|++.++++... ... ++.+..+++.+++.. .++||+|++...++++.+ ..+++++.++|+|||.+++..+.
T Consensus 76 s~~~~~~a~~~~~~----~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 76 SEENIEVAKLHAKK----DPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred CHHHHHHHHHHHHH----cCCCceEEEeCCHHHhhcCCCCCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEecC
Confidence 56777777775321 112 578888888877655 379999999988888877 88999999999999999998764
No 60
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=97.75 E-value=5.1e-05 Score=66.80 Aligned_cols=70 Identities=19% Similarity=0.243 Sum_probs=62.3
Q ss_pred cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCC
Q 024162 15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLT 93 (271)
Q Consensus 15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~~ 93 (271)
.|.+|++.|+++. ++.+|..+|+.... ++..+|+|+++.++||+++ ..+|..+...|.|||.|.++.+..
T Consensus 62 sS~~Mla~Aa~rl--------p~~~f~~aDl~~w~-p~~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN 132 (257)
T COG4106 62 SSPAMLAKAAQRL--------PDATFEEADLRTWK-PEQPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDN 132 (257)
T ss_pred CCHHHHHHHHHhC--------CCCceecccHhhcC-CCCccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCCc
Confidence 4889999998886 67889999998773 4678999999999999998 999999999999999999998763
No 61
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=97.71 E-value=3.3e-05 Score=69.66 Aligned_cols=75 Identities=13% Similarity=0.205 Sum_probs=58.4
Q ss_pred cHHHHHHHHHHhCchhhhcCCC----CeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEE
Q 024162 15 PVSAVLNAIRDLGDEAVEQCDP----QIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIY 89 (271)
Q Consensus 15 ~s~~mv~~ar~~~~~~~~~~~~----~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~ 89 (271)
.++.|++.|+++..... ..+. ++.|...+++.+- ..||+|+++.+++|+.+ ++++..+.+.|||||+|+++
T Consensus 119 ~s~~~V~vA~~h~~~dP-~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~lfit 194 (282)
T KOG1270|consen 119 ASDDMVEVANEHKKMDP-VLEGAIAYRLEYEDTDVEGLT---GKFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFIT 194 (282)
T ss_pred ccHHHHHHHHHhhhcCc-hhccccceeeehhhcchhhcc---cccceeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEee
Confidence 48899999999842211 1222 3566667777653 34999999999999977 99999999999999999999
Q ss_pred ecCC
Q 024162 90 KKLT 93 (271)
Q Consensus 90 ~~~~ 93 (271)
+...
T Consensus 195 tinr 198 (282)
T KOG1270|consen 195 TINR 198 (282)
T ss_pred ehhh
Confidence 8764
No 62
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=97.67 E-value=0.00015 Score=63.36 Aligned_cols=68 Identities=19% Similarity=0.136 Sum_probs=54.8
Q ss_pred cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEec
Q 024162 15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKK 91 (271)
Q Consensus 15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~~ 91 (271)
.++.|++.++++. ..+.+.++++.+ |+++++||+|++..+++|+++ ..++++++|++ ++.+++.++
T Consensus 75 iS~~~l~~A~~~~--------~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~ 143 (204)
T TIGR03587 75 INEYAVEKAKAYL--------PNINIIQGSLFD-PFKDNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEY 143 (204)
T ss_pred CCHHHHHHHHhhC--------CCCcEEEeeccC-CCCCCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEe
Confidence 4788899888764 235677888888 899999999999999988864 78999999998 578888776
Q ss_pred CC
Q 024162 92 LT 93 (271)
Q Consensus 92 ~~ 93 (271)
..
T Consensus 144 ~~ 145 (204)
T TIGR03587 144 YN 145 (204)
T ss_pred eC
Confidence 43
No 63
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=97.66 E-value=0.00049 Score=58.26 Aligned_cols=91 Identities=18% Similarity=0.176 Sum_probs=63.0
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh----------------------HHHH
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG----------------------DQLL 73 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~----------------------~~~L 73 (271)
++.|++.++++.. ..+..+.++.+++...+ ..+||+|+++..+++..+ ..++
T Consensus 50 s~~~~~~a~~~~~----~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 123 (179)
T TIGR00537 50 NPFAVKELRENAK----LNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFL 123 (179)
T ss_pred CHHHHHHHHHHHH----HcCCceEEEEccccccc--CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHH
Confidence 5778888877642 12245788888876644 458999999876654431 4579
Q ss_pred HHHHHhccCCcEEEEEecCCCCcccHHHHHHHHHHHHHHcCCcchh
Q 024162 74 EEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQ 119 (271)
Q Consensus 74 ~ei~RvLKPGG~l~i~~~~~~~~~e~~~~~~~l~~~l~laGF~~v~ 119 (271)
.+++|+|||||++++....... . ..+...+...||....
T Consensus 124 ~~~~~~Lk~gG~~~~~~~~~~~---~----~~~~~~l~~~gf~~~~ 162 (179)
T TIGR00537 124 DELPEILKEGGRVQLIQSSLNG---E----PDTFDKLDERGFRYEI 162 (179)
T ss_pred HhHHHhhCCCCEEEEEEeccCC---h----HHHHHHHHhCCCeEEE
Confidence 9999999999999998765321 1 2445667788987543
No 64
>PRK06202 hypothetical protein; Provisional
Probab=97.65 E-value=0.00016 Score=63.83 Aligned_cols=71 Identities=18% Similarity=0.185 Sum_probs=55.8
Q ss_pred cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEec
Q 024162 15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKK 91 (271)
Q Consensus 15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~~ 91 (271)
.++.|++.++++... .++.+.+.+.+.+++++++||+|+++.++||+++ ..++++++|+++ |.+++.+.
T Consensus 96 ~s~~~l~~a~~~~~~------~~~~~~~~~~~~l~~~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl 167 (232)
T PRK06202 96 PDPRAVAFARANPRR------PGVTFRQAVSDELVAEGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDL 167 (232)
T ss_pred CCHHHHHHHHhcccc------CCCeEEEEecccccccCCCccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEecc
Confidence 377899998877421 2356666777788888889999999999999986 469999999998 67777766
Q ss_pred CC
Q 024162 92 LT 93 (271)
Q Consensus 92 ~~ 93 (271)
..
T Consensus 168 ~~ 169 (232)
T PRK06202 168 IR 169 (232)
T ss_pred cc
Confidence 53
No 65
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=97.64 E-value=6.2e-05 Score=67.13 Aligned_cols=76 Identities=18% Similarity=0.251 Sum_probs=55.6
Q ss_pred cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCc-EEEEEecC
Q 024162 15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGG-TILIYKKL 92 (271)
Q Consensus 15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG-~l~i~~~~ 92 (271)
.+++|++.++++.. +...+....+...++..|--.++|+|+|++...+||+..+.++++++|+||+.| .+.+....
T Consensus 63 ~s~~mL~~a~k~~~--~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWFdle~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 63 VSEAMLKVAKKHPP--VTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWFDLERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred CCHHHHHHhhcCCC--cccccCCccccccccccccCCCcceeeehhhhhHHhhchHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 47899999988753 222334444433444444444999999999999999999999999999998777 66666544
No 66
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=97.55 E-value=0.00038 Score=61.20 Aligned_cols=73 Identities=15% Similarity=0.228 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCC-CCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecC
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLP-VESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKL 92 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp-~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~ 92 (271)
++.+++.++++... ....+.+...++..++ ...+.||+|++...++++++ ..+|+.+.++|+|||++++..+.
T Consensus 79 s~~~~~~a~~~~~~----~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 79 SEENIEVARLHALE----SGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred CHHHHHHHHHHHHH----cCCceEEEecCHHHhhhhcCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEecC
Confidence 56677777765311 1235677778877765 34579999999888888877 88999999999999999998764
No 67
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=97.53 E-value=0.00024 Score=67.85 Aligned_cols=69 Identities=14% Similarity=0.164 Sum_probs=55.4
Q ss_pred cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEec
Q 024162 15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKK 91 (271)
Q Consensus 15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~~ 91 (271)
.++.|++.++++.. +..+.+...+...+ +++||+|+++..++|+.. ..++++++|+|||||++++++.
T Consensus 198 lS~~~l~~A~~~~~------~l~v~~~~~D~~~l---~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 198 ISAEQQKLAQERCA------GLPVEIRLQDYRDL---NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred CCHHHHHHHHHHhc------cCeEEEEECchhhc---CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 37789999988752 13477777777665 468999999988888854 7899999999999999999875
Q ss_pred C
Q 024162 92 L 92 (271)
Q Consensus 92 ~ 92 (271)
.
T Consensus 269 ~ 269 (383)
T PRK11705 269 G 269 (383)
T ss_pred c
Confidence 4
No 68
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=97.51 E-value=0.00031 Score=61.51 Aligned_cols=58 Identities=16% Similarity=0.134 Sum_probs=46.7
Q ss_pred CCeEEEeccCCCCC--------CCCCceeEEEeccccccCCh------------HHHHHHHHHhccCCcEEEEEecCC
Q 024162 36 PQIITQASSLSQLP--------VESFSIDTVLSISSSHELPG------------DQLLEEISRVLKPGGTILIYKKLT 93 (271)
Q Consensus 36 ~~v~~~~~d~e~lp--------~~~~sfD~V~s~~~l~~~~~------------~~~L~ei~RvLKPGG~l~i~~~~~ 93 (271)
..+.++++|+.+.+ +.+.+||+|++..+.++... ..+|++++|+|||||.|++..+..
T Consensus 91 ~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~ 168 (209)
T PRK11188 91 VGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG 168 (209)
T ss_pred CCcEEEecCCCChHHHHHHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC
Confidence 35788999998864 67889999999776655432 358999999999999999988764
No 69
>PRK14967 putative methyltransferase; Provisional
Probab=97.45 E-value=0.0028 Score=55.71 Aligned_cols=72 Identities=19% Similarity=0.236 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCC----------------------hHHHH
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP----------------------GDQLL 73 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~----------------------~~~~L 73 (271)
++.|++.+++.... .+.++.++.+++.. .+++++||+|+++..++... -..++
T Consensus 68 s~~~l~~a~~n~~~----~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 142 (223)
T PRK14967 68 SRRAVRSARLNALL----AGVDVDVRRGDWAR-AVEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLC 142 (223)
T ss_pred CHHHHHHHHHHHHH----hCCeeEEEECchhh-hccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHH
Confidence 45677777765321 12357778888765 35678999999974322110 14578
Q ss_pred HHHHHhccCCcEEEEEecC
Q 024162 74 EEISRVLKPGGTILIYKKL 92 (271)
Q Consensus 74 ~ei~RvLKPGG~l~i~~~~ 92 (271)
++++++|||||+|++....
T Consensus 143 ~~a~~~Lk~gG~l~~~~~~ 161 (223)
T PRK14967 143 DAAPALLAPGGSLLLVQSE 161 (223)
T ss_pred HHHHHhcCCCcEEEEEEec
Confidence 8899999999999986543
No 70
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=97.43 E-value=0.00073 Score=62.44 Aligned_cols=85 Identities=21% Similarity=0.352 Sum_probs=63.8
Q ss_pred eEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCCCCc--------c---cHHH----
Q 024162 38 IITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLTSDK--------G---DVDK---- 101 (271)
Q Consensus 38 v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~~~~~--------~---e~~~---- 101 (271)
+.++-..++.+|. .+.||+|++.-+++|..+ -..|.++...|+|||.|++.+..-... + ..+.
T Consensus 167 ~~~lplgvE~Lp~-~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~Fi 245 (315)
T PF08003_consen 167 VFELPLGVEDLPN-LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFI 245 (315)
T ss_pred EEEcCcchhhccc-cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEe
Confidence 4444356889988 789999999999988876 899999999999999999887532100 0 0111
Q ss_pred -HHHHHHHHHHHcCCcchhhhhh
Q 024162 102 -AISALEGKLLLAGFLDAQRIQL 123 (271)
Q Consensus 102 -~~~~l~~~l~laGF~~v~~~~~ 123 (271)
+...+...|..+||.+++.+..
T Consensus 246 Ps~~~L~~wl~r~gF~~v~~v~~ 268 (315)
T PF08003_consen 246 PSVAALKNWLERAGFKDVRCVDV 268 (315)
T ss_pred CCHHHHHHHHHHcCCceEEEecC
Confidence 1357888999999999877653
No 71
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=97.41 E-value=0.0004 Score=63.45 Aligned_cols=73 Identities=22% Similarity=0.328 Sum_probs=52.4
Q ss_pred cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCC--h-HHHHHHHHHhccCCcEEEEEec
Q 024162 15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP--G-DQLLEEISRVLKPGGTILIYKK 91 (271)
Q Consensus 15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~--~-~~~L~ei~RvLKPGG~l~i~~~ 91 (271)
.|++..+.++++.... .....+.+...|..+++. .||.|+|+-++.|+. + +.+++++.|+|||||+++++..
T Consensus 93 lS~~Q~~~a~~~~~~~--gl~~~v~v~~~D~~~~~~---~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i 167 (273)
T PF02353_consen 93 LSEEQAEYARERIREA--GLEDRVEVRLQDYRDLPG---KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTI 167 (273)
T ss_dssp S-HHHHHHHHHHHHCS--TSSSTEEEEES-GGG------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEE
T ss_pred CCHHHHHHHHHHHHhc--CCCCceEEEEeeccccCC---CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEec
Confidence 4777778887774221 122457788888877654 999999999998885 3 8999999999999999999876
Q ss_pred C
Q 024162 92 L 92 (271)
Q Consensus 92 ~ 92 (271)
.
T Consensus 168 ~ 168 (273)
T PF02353_consen 168 T 168 (273)
T ss_dssp E
T ss_pred c
Confidence 5
No 72
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=97.40 E-value=0.00025 Score=62.54 Aligned_cols=106 Identities=16% Similarity=0.165 Sum_probs=67.8
Q ss_pred cccHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEE
Q 024162 13 ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIY 89 (271)
Q Consensus 13 ~~~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~ 89 (271)
..|++.+++.|++.... .......+.+..+.+.-.+...||+|++-+.+.|+.+ -.+|+.....|+|+|.+++.
T Consensus 84 VEp~~~Fl~~a~~~l~~---~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvK 160 (218)
T PF05891_consen 84 VEPVEKFLEQAKEYLGK---DNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVK 160 (218)
T ss_dssp EES-HHHHHHHHHHTCC---GGCCEEEEEES-GGG----TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred eccCHHHHHHHHHHhcc---cCCCcceEEecCHhhccCCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEE
Confidence 35789999999976321 1112345556667776555679999999988888887 67899999999999999999
Q ss_pred ecCCCCc--------ccHHHHHHHHHHHHHHcCCcchhhh
Q 024162 90 KKLTSDK--------GDVDKAISALEGKLLLAGFLDAQRI 121 (271)
Q Consensus 90 ~~~~~~~--------~e~~~~~~~l~~~l~laGF~~v~~~ 121 (271)
+...... ..+.+..+.+.+.+..||+.-+...
T Consensus 161 EN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~ 200 (218)
T PF05891_consen 161 ENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEE 200 (218)
T ss_dssp EEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEE
T ss_pred ecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEec
Confidence 8653211 1122233467777899999876543
No 73
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=97.39 E-value=0.00053 Score=53.45 Aligned_cols=70 Identities=24% Similarity=0.255 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCC-CCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEe
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQ-LPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYK 90 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~-lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~ 90 (271)
++.+++.+++..... ...++.++.+++.. ++....+||+|++....+.. ..++++++|.|||||+|++.-
T Consensus 52 s~~~~~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~--~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 52 NPEALRLIERNARRF---GVSNIVIVEGDAPEALEDSLPEPDRVFIGGSGGLL--QEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred CHHHHHHHHHHHHHh---CCCceEEEeccccccChhhcCCCCEEEECCcchhH--HHHHHHHHHHcCCCCEEEEEe
Confidence 567777777653211 11357777787764 33445689999986543322 689999999999999999864
No 74
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=97.39 E-value=0.00067 Score=63.28 Aligned_cols=92 Identities=21% Similarity=0.140 Sum_probs=63.4
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccc-------c-CCh--HHHHHHHHHhccCCcE
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSH-------E-LPG--DQLLEEISRVLKPGGT 85 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~-------~-~~~--~~~L~ei~RvLKPGG~ 85 (271)
+..|++.++...... ....+.+.++|+.++|+.+++||+|++...+. + ... ..++++++|+|||||+
T Consensus 213 ~~~~~~~a~~nl~~~---g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~ 289 (329)
T TIGR01177 213 DWKMVAGARINLEHY---GIEDFFVKRGDATKLPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGW 289 (329)
T ss_pred CHHHHHHHHHHHHHh---CCCCCeEEecchhcCCcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcE
Confidence 466777777653211 11236788899999999889999999963221 1 112 7899999999999999
Q ss_pred EEEEecCCCCcccHHHHHHHHHHHHHHcCCcchhhh
Q 024162 86 ILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRI 121 (271)
Q Consensus 86 l~i~~~~~~~~~e~~~~~~~l~~~l~laGF~~v~~~ 121 (271)
+++..+... .+...+..+|| .+...
T Consensus 290 lv~~~~~~~----------~~~~~~~~~g~-i~~~~ 314 (329)
T TIGR01177 290 IVYAVPTRI----------DLESLAEDAFR-VVKRF 314 (329)
T ss_pred EEEEEcCCC----------CHHHHHhhcCc-chhee
Confidence 998876521 23345788999 54443
No 75
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=97.36 E-value=0.00084 Score=59.43 Aligned_cols=89 Identities=19% Similarity=0.190 Sum_probs=64.9
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccC-CCCCCCCCceeEEEeccccccCCh------------HHHHHHHHHhccC
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSL-SQLPVESFSIDTVLSISSSHELPG------------DQLLEEISRVLKP 82 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~-e~lp~~~~sfD~V~s~~~l~~~~~------------~~~L~ei~RvLKP 82 (271)
|..|++++.++. .. -.++.+|+ +-+||.+++||.|+++.+++|+-+ ..++..++.+|++
T Consensus 81 SpsML~~a~~~e---~e-----gdlil~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~r 152 (270)
T KOG1541|consen 81 SPSMLEQAVERE---LE-----GDLILCDMGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKR 152 (270)
T ss_pred CHHHHHHHHHhh---hh-----cCeeeeecCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhcc
Confidence 788999988753 11 12344555 689999999999999888777532 2468889999999
Q ss_pred CcEEEEEecCCCCcccHHHHHHHHHHHHHHcCCcc
Q 024162 83 GGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLD 117 (271)
Q Consensus 83 GG~l~i~~~~~~~~~e~~~~~~~l~~~l~laGF~~ 117 (271)
|++.+++-... .....+.+....+.+||--
T Consensus 153 g~raV~QfYpe-----n~~q~d~i~~~a~~aGF~G 182 (270)
T KOG1541|consen 153 GARAVLQFYPE-----NEAQIDMIMQQAMKAGFGG 182 (270)
T ss_pred CceeEEEeccc-----chHHHHHHHHHHHhhccCC
Confidence 99999987653 2223346677888999864
No 76
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=97.32 E-value=0.0015 Score=56.44 Aligned_cols=92 Identities=14% Similarity=0.164 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCC-CCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCC
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQL-PVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLT 93 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~l-p~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~~ 93 (271)
++.|++.++++.... ....++.++.+++.+. +.....||+|++... ... ..++.++.++|||||++++.....
T Consensus 74 ~~~~~~~a~~n~~~~--g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~~---~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 148 (198)
T PRK00377 74 DEKAINLTRRNAEKF--GVLNNIVLIKGEAPEILFTINEKFDRIFIGGG---SEKLKEIISASWEIIKKGGRIVIDAILL 148 (198)
T ss_pred CHHHHHHHHHHHHHh--CCCCCeEEEEechhhhHhhcCCCCCEEEECCC---cccHHHHHHHHHHHcCCCcEEEEEeecH
Confidence 566777777653211 1124577888888653 333468999998542 223 788999999999999998754321
Q ss_pred CCcccHHHHHHHHHHHHHHcCCcchhh
Q 024162 94 SDKGDVDKAISALEGKLLLAGFLDAQR 120 (271)
Q Consensus 94 ~~~~e~~~~~~~l~~~l~laGF~~v~~ 120 (271)
...+.+...+...|| +.+.
T Consensus 149 -------~~~~~~~~~l~~~g~-~~~~ 167 (198)
T PRK00377 149 -------ETVNNALSALENIGF-NLEI 167 (198)
T ss_pred -------HHHHHHHHHHHHcCC-CeEE
Confidence 112355566778899 4443
No 77
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=97.32 E-value=0.0019 Score=57.00 Aligned_cols=94 Identities=20% Similarity=0.231 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEecccccc------CCh--------------------
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHE------LPG-------------------- 69 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~------~~~-------------------- 69 (271)
++.|++.+++.... ....++.++.+++.. ++++++||+|+++..++. +..
T Consensus 120 ~~~~~~~a~~~~~~---~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 195 (251)
T TIGR03534 120 SPEALAVARKNAAR---LGLDNVTFLQSDWFE-PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDF 195 (251)
T ss_pred CHHHHHHHHHHHHH---cCCCeEEEEECchhc-cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHH
Confidence 56777777765321 111358888998865 566789999998543221 110
Q ss_pred -HHHHHHHHHhccCCcEEEEEecCCCCcccHHHHHHHHHHHHHHcCCcchhhh
Q 024162 70 -DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRI 121 (271)
Q Consensus 70 -~~~L~ei~RvLKPGG~l~i~~~~~~~~~e~~~~~~~l~~~l~laGF~~v~~~ 121 (271)
..++.++.++|+|||.+++..... . .+.+...+..+||..++..
T Consensus 196 ~~~~i~~~~~~L~~gG~~~~~~~~~-----~---~~~~~~~l~~~gf~~v~~~ 240 (251)
T TIGR03534 196 YRRIIAQAPRLLKPGGWLLLEIGYD-----Q---GEAVRALFEAAGFADVETR 240 (251)
T ss_pred HHHHHHHHHHhcccCCEEEEEECcc-----H---HHHHHHHHHhCCCCceEEE
Confidence 257889999999999999875321 1 1245666778999876543
No 78
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=97.28 E-value=0.00076 Score=64.51 Aligned_cols=74 Identities=18% Similarity=0.162 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCC--CCCCCceeEEEeccccccCCh-------HHHHHHHHHhccCCcEE
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQL--PVESFSIDTVLSISSSHELPG-------DQLLEEISRVLKPGGTI 86 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~l--p~~~~sfD~V~s~~~l~~~~~-------~~~L~ei~RvLKPGG~l 86 (271)
...|++.+.++... ..-.++.++++|+..+ .+++++||.|+.++...|... ..++.+++|+|||||.+
T Consensus 155 ~~~~i~~a~~ka~~---~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l 231 (390)
T PRK14121 155 HTPSIEQVLKQIEL---LNLKNLLIINYDARLLLELLPSNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTL 231 (390)
T ss_pred CHHHHHHHHHHHHH---cCCCcEEEEECCHHHhhhhCCCCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEE
Confidence 44566666555311 1224688999998765 588999999999876555422 58999999999999999
Q ss_pred EEEecC
Q 024162 87 LIYKKL 92 (271)
Q Consensus 87 ~i~~~~ 92 (271)
.+.+-.
T Consensus 232 ~l~TD~ 237 (390)
T PRK14121 232 ELRTDS 237 (390)
T ss_pred EEEEEC
Confidence 998744
No 79
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.27 E-value=0.00025 Score=69.15 Aligned_cols=100 Identities=23% Similarity=0.228 Sum_probs=60.7
Q ss_pred cEEEEecCCcccHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEecccc-ccCCh-HHHHHHHHHhcc
Q 024162 4 AVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSS-HELPG-DQLLEEISRVLK 81 (271)
Q Consensus 4 ~vl~~td~~~~~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l-~~~~~-~~~L~ei~RvLK 81 (271)
+|+.++=.-.-.-+..++.|-+++ + ...+-...-..|||++++||+|.+.-.+ .|... .-+|-|+-|+||
T Consensus 139 ~V~t~s~a~~d~~~~qvqfaleRG---v-----pa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLR 210 (506)
T PF03141_consen 139 NVTTMSFAPNDEHEAQVQFALERG---V-----PAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLR 210 (506)
T ss_pred CceEEEcccccCCchhhhhhhhcC---c-----chhhhhhccccccCCccchhhhhcccccccchhcccceeehhhhhhc
Confidence 455544333333445556666564 1 1111111236899999999999986544 44444 678999999999
Q ss_pred CCcEEEEEecCCC--CcccHHHHHHHHHHHHH
Q 024162 82 PGGTILIYKKLTS--DKGDVDKAISALEGKLL 111 (271)
Q Consensus 82 PGG~l~i~~~~~~--~~~e~~~~~~~l~~~l~ 111 (271)
|||.|+++.+... ...+....|..+.....
T Consensus 211 pGGyfv~S~ppv~~r~~~~~~~~~~~~~~l~~ 242 (506)
T PF03141_consen 211 PGGYFVLSGPPVYQRTDEDLEEEWNAMEDLAK 242 (506)
T ss_pred cCceEEecCCcccccchHHHHHHHHHHHHHHH
Confidence 9999999876432 22234445555544433
No 80
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=97.24 E-value=0.0024 Score=54.44 Aligned_cols=92 Identities=14% Similarity=0.152 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecCCCC
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSD 95 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~ 95 (271)
++.|++.+++..... ...++.++.+++. .++ ..+||+|++....+++ ..++.+++++|+|||+|++.....
T Consensus 64 s~~~~~~a~~n~~~~---~~~~i~~~~~d~~-~~~-~~~~D~v~~~~~~~~~--~~~l~~~~~~Lk~gG~lv~~~~~~-- 134 (187)
T PRK08287 64 NPDALRLIKENRQRF---GCGNIDIIPGEAP-IEL-PGKADAIFIGGSGGNL--TAIIDWSLAHLHPGGRLVLTFILL-- 134 (187)
T ss_pred CHHHHHHHHHHHHHh---CCCCeEEEecCch-hhc-CcCCCEEEECCCccCH--HHHHHHHHHhcCCCeEEEEEEecH--
Confidence 466777777653111 1135778888764 334 3589999986543322 678899999999999999876432
Q ss_pred cccHHHHHHHHHHHHHHcCCcchhhh
Q 024162 96 KGDVDKAISALEGKLLLAGFLDAQRI 121 (271)
Q Consensus 96 ~~e~~~~~~~l~~~l~laGF~~v~~~ 121 (271)
.. ...+...+..+||..++..
T Consensus 135 -~~----~~~~~~~l~~~g~~~~~~~ 155 (187)
T PRK08287 135 -EN----LHSALAHLEKCGVSELDCV 155 (187)
T ss_pred -hh----HHHHHHHHHHCCCCcceEE
Confidence 11 2255567888999876543
No 81
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=97.24 E-value=0.0014 Score=57.75 Aligned_cols=57 Identities=18% Similarity=0.195 Sum_probs=46.4
Q ss_pred CCeEEEeccCCCCCCC-CCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEecC
Q 024162 36 PQIITQASSLSQLPVE-SFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKKL 92 (271)
Q Consensus 36 ~~v~~~~~d~e~lp~~-~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~~~ 92 (271)
..|.+.++|+.+++.. ...||.|+-...+++++. ...++.+.++|||||++++....
T Consensus 94 ~~v~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~ 154 (213)
T TIGR03840 94 GNIEIFCGDFFALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLD 154 (213)
T ss_pred CceEEEEccCCCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence 5689999999887743 457999998877788875 67899999999999987776543
No 82
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=97.21 E-value=0.00083 Score=60.07 Aligned_cols=78 Identities=15% Similarity=0.230 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEecC
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKKL 92 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~~~ 92 (271)
|++.++..++...........-+.-...+-..-|+..+++|+|++++++.-++. ..++..++++|||||.|++.+.+
T Consensus 106 sp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg 185 (264)
T KOG2361|consen 106 SPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYG 185 (264)
T ss_pred ChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecc
Confidence 667777777764221111111111111121244678999999999999887765 88999999999999999999987
Q ss_pred C
Q 024162 93 T 93 (271)
Q Consensus 93 ~ 93 (271)
.
T Consensus 186 ~ 186 (264)
T KOG2361|consen 186 R 186 (264)
T ss_pred c
Confidence 4
No 83
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=97.19 E-value=0.0023 Score=57.33 Aligned_cols=72 Identities=21% Similarity=0.279 Sum_probs=49.2
Q ss_pred ceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecCCCCcccHHHHHHHHHHHHHHcCCcchhhhhhccccCcceeE
Q 024162 54 SIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQLKSVVPAEVVS 133 (271)
Q Consensus 54 sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~~~e~~~~~~~l~~~l~laGF~~v~~~~~~~~~~~~~~~ 133 (271)
+||+|+++...+. -..++.++.++|||||+|+++..... ....+...+...||..+...... .+
T Consensus 179 ~fD~Vvani~~~~--~~~l~~~~~~~LkpgG~lilsgi~~~-------~~~~v~~~l~~~Gf~~~~~~~~~-------~W 242 (250)
T PRK00517 179 KADVIVANILANP--LLELAPDLARLLKPGGRLILSGILEE-------QADEVLEAYEEAGFTLDEVLERG-------EW 242 (250)
T ss_pred CcCEEEEcCcHHH--HHHHHHHHHHhcCCCcEEEEEECcHh-------hHHHHHHHHHHCCCEEEEEEEeC-------CE
Confidence 7999998643221 16788999999999999999876521 12356677888999876554322 35
Q ss_pred EEEEeeCC
Q 024162 134 FGVKGKKP 141 (271)
Q Consensus 134 ~~i~a~KP 141 (271)
+.+..+|+
T Consensus 243 ~~~~~~~~ 250 (250)
T PRK00517 243 VALVGKKK 250 (250)
T ss_pred EEEEEEeC
Confidence 55655553
No 84
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.18 E-value=0.0012 Score=57.88 Aligned_cols=68 Identities=10% Similarity=0.086 Sum_probs=50.6
Q ss_pred cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEe
Q 024162 15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYK 90 (271)
Q Consensus 15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~ 90 (271)
.++.|++.++++... ....++.++.+|+.....+.+.||+|++....+++ ...+++.|||||+|++..
T Consensus 109 ~~~~~~~~a~~~l~~---~g~~~v~~~~gd~~~~~~~~~~fD~I~~~~~~~~~-----~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 109 RIPELAEKAKKTLKK---LGYDNVEVIVGDGTLGYEENAPYDRIYVTAAGPDI-----PKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CCHHHHHHHHHHHHH---cCCCCeEEEECCcccCCCcCCCcCEEEECCCcccc-----hHHHHHhhCCCcEEEEEE
Confidence 467888888876421 11246899999988776677899999987665444 356888999999998864
No 85
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.15 E-value=0.0012 Score=57.37 Aligned_cols=68 Identities=13% Similarity=0.112 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEe
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYK 90 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~ 90 (271)
++.|++.++++.... ....++.++.+|+........+||+|++..+.++++ .+++++|+|||+|++..
T Consensus 106 ~~~~~~~a~~~l~~~--~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~~~-----~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 106 VKELAIYAAQNIERL--GYWGVVEVYHGDGKRGLEKHAPFDAIIVTAAASTIP-----SALVRQLKDGGVLVIPV 173 (205)
T ss_pred CHHHHHHHHHHHHHc--CCCCcEEEEECCcccCCccCCCccEEEEccCcchhh-----HHHHHhcCcCcEEEEEE
Confidence 677888887753211 111257888899877655567999999987766554 57899999999998764
No 86
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=97.14 E-value=0.00056 Score=62.98 Aligned_cols=55 Identities=15% Similarity=0.151 Sum_probs=46.1
Q ss_pred CCeEEEeccCCCCCCC-CCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEe
Q 024162 36 PQIITQASSLSQLPVE-SFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYK 90 (271)
Q Consensus 36 ~~v~~~~~d~e~lp~~-~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~ 90 (271)
..|.|.+.++...+++ .+.||+|++.+++.|+.. ..+++.+++.|+|||.|++-.
T Consensus 204 ~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 204 NYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred ccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 4578999999875554 678999999998888864 889999999999999887654
No 87
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=97.11 E-value=0.0012 Score=58.51 Aligned_cols=65 Identities=20% Similarity=0.354 Sum_probs=52.0
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCC--cEEEEEe
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPG--GTILIYK 90 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPG--G~l~i~~ 90 (271)
.+.+++.+++ ..+|.++.+|+. -+++. +|+|+....+|.+++ ..+|+++++.|+|| |+|+|.+
T Consensus 132 lp~v~~~~~~---------~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e 199 (241)
T PF00891_consen 132 LPEVIEQAKE---------ADRVEFVPGDFF-DPLPV--ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIE 199 (241)
T ss_dssp -HHHHCCHHH---------TTTEEEEES-TT-TCCSS--ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEE
T ss_pred cHhhhhcccc---------ccccccccccHH-hhhcc--ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence 4555655555 267899999997 56666 999999999999987 77999999999999 9999998
Q ss_pred cC
Q 024162 91 KL 92 (271)
Q Consensus 91 ~~ 92 (271)
..
T Consensus 200 ~~ 201 (241)
T PF00891_consen 200 MV 201 (241)
T ss_dssp EE
T ss_pred ec
Confidence 75
No 88
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=97.09 E-value=0.0025 Score=46.41 Aligned_cols=54 Identities=28% Similarity=0.485 Sum_probs=44.9
Q ss_pred CCeEEEeccCCCCCC-CCCceeEEEecccccc-CCh-HHHHHHHHHhccCCcEEEEE
Q 024162 36 PQIITQASSLSQLPV-ESFSIDTVLSISSSHE-LPG-DQLLEEISRVLKPGGTILIY 89 (271)
Q Consensus 36 ~~v~~~~~d~e~lp~-~~~sfD~V~s~~~l~~-~~~-~~~L~ei~RvLKPGG~l~i~ 89 (271)
..+.+...++.+... ....||+|++...+++ ... ..+++.+.+.|+|||.+++.
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 47 DNVEVLKGDAEELPPEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred cceEEEEcChhhhccccCCceEEEEEccceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 567888888887664 5678999999888877 444 88999999999999999876
No 89
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=97.07 E-value=0.00088 Score=58.33 Aligned_cols=56 Identities=16% Similarity=0.200 Sum_probs=39.1
Q ss_pred CCeEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEec
Q 024162 36 PQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKK 91 (271)
Q Consensus 36 ~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~~ 91 (271)
..|.|.+.++.+.+...+.||+|++-+++.++.. ..++..+++.|+|||.|++-..
T Consensus 118 ~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 118 KMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHS 176 (196)
T ss_dssp TTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred CceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 4689999999885556789999999999999875 8899999999999999998643
No 90
>PRK14968 putative methyltransferase; Provisional
Probab=96.98 E-value=0.007 Score=50.79 Aligned_cols=95 Identities=20% Similarity=0.213 Sum_probs=58.2
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccC--------------------C--hHHHH
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHEL--------------------P--GDQLL 73 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~--------------------~--~~~~L 73 (271)
++.|++.+++..... ...+..+.++++++.+ ++.+.+||+|+++..+... . -..++
T Consensus 54 s~~~~~~a~~~~~~~-~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 131 (188)
T PRK14968 54 NPYAVECAKCNAKLN-NIRNNGVEVIRSDLFE-PFRGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFL 131 (188)
T ss_pred CHHHHHHHHHHHHHc-CCCCcceEEEeccccc-cccccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHH
Confidence 466666666553110 0011126777787755 4555689999986443221 0 14579
Q ss_pred HHHHHhccCCcEEEEEecCCCCcccHHHHHHHHHHHHHHcCCcchh
Q 024162 74 EEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQ 119 (271)
Q Consensus 74 ~ei~RvLKPGG~l~i~~~~~~~~~e~~~~~~~l~~~l~laGF~~v~ 119 (271)
+++.++|||||.+++...... .. ..+...+..+||....
T Consensus 132 ~~~~~~Lk~gG~~~~~~~~~~---~~----~~l~~~~~~~g~~~~~ 170 (188)
T PRK14968 132 DEVGRYLKPGGRILLLQSSLT---GE----DEVLEYLEKLGFEAEV 170 (188)
T ss_pred HHHHHhcCCCeEEEEEEcccC---CH----HHHHHHHHHCCCeeee
Confidence 999999999999988764421 11 2455677788997544
No 91
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=96.89 E-value=0.00083 Score=63.77 Aligned_cols=54 Identities=26% Similarity=0.473 Sum_probs=49.9
Q ss_pred EEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCC
Q 024162 40 TQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLT 93 (271)
Q Consensus 40 ~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~~ 93 (271)
++.+++-+.||+++.||.+.++-+.+|.++ ..+++|++|++||||.++..++..
T Consensus 164 ~~~~~~~~~~fedn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~ 218 (364)
T KOG1269|consen 164 FVVADFGKMPFEDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIK 218 (364)
T ss_pred eehhhhhcCCCCccccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHHH
Confidence 477889999999999999999999999988 999999999999999999998753
No 92
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=96.88 E-value=0.00083 Score=61.32 Aligned_cols=55 Identities=36% Similarity=0.526 Sum_probs=50.0
Q ss_pred EEEeccCCCCCCCCCceeEEEeccccccCCh----HHHHHHHHHhccCCcEEEEEecCC
Q 024162 39 ITQASSLSQLPVESFSIDTVLSISSSHELPG----DQLLEEISRVLKPGGTILIYKKLT 93 (271)
Q Consensus 39 ~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~----~~~L~ei~RvLKPGG~l~i~~~~~ 93 (271)
....+|+.++|+.+.+||.++++.++||+.. ..+++|+.|+|||||...++.|..
T Consensus 88 ~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~ 146 (293)
T KOG1331|consen 88 NVCRADALKLPFREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWAL 146 (293)
T ss_pred eeehhhhhcCCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehh
Confidence 4566899999999999999999999999865 789999999999999999999874
No 93
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=96.87 E-value=0.0022 Score=49.82 Aligned_cols=74 Identities=18% Similarity=0.248 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCC--CCCCceeEEEeccccccCC--------h-HHHHHHHHHhccCCc
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLP--VESFSIDTVLSISSSHELP--------G-DQLLEEISRVLKPGG 84 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp--~~~~sfD~V~s~~~l~~~~--------~-~~~L~ei~RvLKPGG 84 (271)
.+..+++++...... ....++.++++|+..+. +++++||+|+++-.+.... . ..+++++.++|||||
T Consensus 32 ~~~~~~~a~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG 109 (117)
T PF13659_consen 32 DPEAVELARRNLPRN--GLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGG 109 (117)
T ss_dssp SHHHHHHHHHHCHHC--TTTTTEEEEESHHHHHHHTCTTT-EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEE
T ss_pred CHHHHHHHHHHHHHc--cCCceEEEEECchhhchhhccCceeEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCe
Confidence 345667777664221 12246899999998776 8899999999966543221 1 678999999999999
Q ss_pred EEEEEec
Q 024162 85 TILIYKK 91 (271)
Q Consensus 85 ~l~i~~~ 91 (271)
.+++..+
T Consensus 110 ~~~~~~~ 116 (117)
T PF13659_consen 110 VLVFITP 116 (117)
T ss_dssp EEEEEEE
T ss_pred EEEEEeC
Confidence 9998764
No 94
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.83 E-value=0.00027 Score=59.27 Aligned_cols=47 Identities=26% Similarity=0.313 Sum_probs=40.6
Q ss_pred CCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEecC
Q 024162 46 SQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKKL 92 (271)
Q Consensus 46 e~lp~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~~~ 92 (271)
...+|.++|.|+|++..++.|+.- ..++++.+|+|||||+|.+..+.
T Consensus 39 ~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPd 88 (185)
T COG4627 39 NESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPD 88 (185)
T ss_pred hhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCC
Confidence 456899999999999888877652 78999999999999999998764
No 95
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=96.82 E-value=0.0037 Score=54.63 Aligned_cols=67 Identities=12% Similarity=0.070 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEe
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYK 90 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~ 90 (271)
++.|++.++++... ....++.++.+++.........||+|++.....++ ...+.+.|+|||+|++..
T Consensus 111 ~~~~~~~A~~~~~~---~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~~-----~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 111 IPELAEKAERRLRK---LGLDNVIVIVGDGTQGWEPLAPYDRIYVTAAGPKI-----PEALIDQLKEGGILVMPV 177 (215)
T ss_pred CHHHHHHHHHHHHH---CCCCCeEEEECCcccCCcccCCCCEEEEcCCcccc-----cHHHHHhcCcCcEEEEEE
Confidence 57788888876421 11246889999987765556789999987654444 356889999999998864
No 96
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=96.70 E-value=0.0044 Score=54.05 Aligned_cols=70 Identities=11% Similarity=0.114 Sum_probs=53.1
Q ss_pred cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEE
Q 024162 15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIY 89 (271)
Q Consensus 15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~ 89 (271)
.++.|++.++++.... ....++.+.++++..++ ++||+|++...+++++. ..++++++|++++++.+.+.
T Consensus 85 ~s~~~i~~a~~~~~~~--~~~~~i~~~~~d~~~~~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 85 ISEQMVQMARNRAQGR--DVAGNVEFEVNDLLSLC---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred CCHHHHHHHHHHHHhc--CCCCceEEEECChhhCC---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 3788899998874211 11136889999998876 78999999888877753 67899999999988776654
No 97
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=96.69 E-value=0.0064 Score=58.11 Aligned_cols=75 Identities=16% Similarity=0.145 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCC---h---HHHHHHHHHhccCCcEEEEE
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP---G---DQLLEEISRVLKPGGTILIY 89 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~---~---~~~L~ei~RvLKPGG~l~i~ 89 (271)
++.|++.+++...........++.+..+++... ++..+||+|+++-.+|... + .+++.+++|+|+|||.|++.
T Consensus 261 S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV 339 (378)
T PRK15001 261 SPMAVASSRLNVETNMPEALDRCEFMINNALSG-VEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV 339 (378)
T ss_pred CHHHHHHHHHHHHHcCcccCceEEEEEcccccc-CCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEE
Confidence 567888888753211101113577777776432 3456899999987766542 2 67899999999999999998
Q ss_pred ec
Q 024162 90 KK 91 (271)
Q Consensus 90 ~~ 91 (271)
..
T Consensus 340 ~n 341 (378)
T PRK15001 340 AN 341 (378)
T ss_pred Ee
Confidence 63
No 98
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=96.62 E-value=0.003 Score=54.18 Aligned_cols=58 Identities=17% Similarity=0.132 Sum_probs=44.3
Q ss_pred cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCC-C-CCCCCceeEEEeccccccCCh-HHHHHHHHHhccC
Q 024162 15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQ-L-PVESFSIDTVLSISSSHELPG-DQLLEEISRVLKP 82 (271)
Q Consensus 15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~-l-p~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKP 82 (271)
.++.|++.++++ .+.+++++++. + ++++++||+|++..++||+++ ..+++++.|++++
T Consensus 44 ~s~~~i~~a~~~----------~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 44 IDQDGVLACVAR----------GVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATRNPEEILDEMLRVGRH 104 (194)
T ss_pred CCHHHHHHHHHc----------CCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCcCHHHHHHHHHHhCCe
Confidence 356666666543 24567788865 5 478889999999999999987 8899999998765
No 99
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=96.61 E-value=0.007 Score=55.82 Aligned_cols=75 Identities=17% Similarity=0.159 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCC-CCCCCCc----eeEEEeccccccCCh---HHHHHHHHHhccCCcEEE
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQ-LPVESFS----IDTVLSISSSHELPG---DQLLEEISRVLKPGGTIL 87 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~-lp~~~~s----fD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~ 87 (271)
|+.|++.++++.... ....+|.++++|+.+ +++.... ..++++..++++++. ..+|++++++|+|||.|+
T Consensus 97 S~~mL~~a~~~l~~~--~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~l 174 (301)
T TIGR03438 97 SADALKESAAALAAD--YPQLEVHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLL 174 (301)
T ss_pred CHHHHHHHHHHHHhh--CCCceEEEEEEcccchhhhhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEE
Confidence 788888888764211 123567788999876 4554432 334444456777764 678999999999999998
Q ss_pred EEecC
Q 024162 88 IYKKL 92 (271)
Q Consensus 88 i~~~~ 92 (271)
+....
T Consensus 175 ig~d~ 179 (301)
T TIGR03438 175 IGVDL 179 (301)
T ss_pred EeccC
Confidence 86543
No 100
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=96.61 E-value=0.013 Score=49.35 Aligned_cols=78 Identities=17% Similarity=0.241 Sum_probs=50.0
Q ss_pred EEEecCCcccHHHHHHHHHHhCchhhhcCCCC-eEEEeccCCCCCCCCCceeEEEeccccccCCh------HHHHHHHHH
Q 024162 6 LALSEDKILPVSAVLNAIRDLGDEAVEQCDPQ-IITQASSLSQLPVESFSIDTVLSISSSHELPG------DQLLEEISR 78 (271)
Q Consensus 6 l~~td~~~~~s~~mv~~ar~~~~~~~~~~~~~-v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~------~~~L~ei~R 78 (271)
+..+|.. +.+++.+++.... .+.. +.++..|+.+ ++++..||+|+++-.++.-.. ..++.+..+
T Consensus 58 v~~vDi~----~~a~~~a~~n~~~----n~~~~v~~~~~d~~~-~~~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~ 128 (170)
T PF05175_consen 58 VTAVDIN----PDALELAKRNAER----NGLENVEVVQSDLFE-ALPDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARR 128 (170)
T ss_dssp EEEEESB----HHHHHHHHHHHHH----TTCTTEEEEESSTTT-TCCTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHH
T ss_pred EEEEcCC----HHHHHHHHHHHHh----cCccccccccccccc-cccccceeEEEEccchhcccccchhhHHHHHHHHHH
Confidence 4445554 5556666554211 1122 7888888754 344789999999876655432 778999999
Q ss_pred hccCCcEEEEEecC
Q 024162 79 VLKPGGTILIYKKL 92 (271)
Q Consensus 79 vLKPGG~l~i~~~~ 92 (271)
.|||||.|++....
T Consensus 129 ~Lk~~G~l~lv~~~ 142 (170)
T PF05175_consen 129 YLKPGGRLFLVINS 142 (170)
T ss_dssp HEEEEEEEEEEEET
T ss_pred hccCCCEEEEEeec
Confidence 99999999776543
No 101
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=96.57 E-value=0.0091 Score=52.00 Aligned_cols=67 Identities=15% Similarity=0.168 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEE
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTIL 87 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~ 87 (271)
++.|++.++++.... ....++.+..+++ +..+++||+|++..+++|+++ ..+++++.+.+++++.+.
T Consensus 94 s~~~i~~a~~~~~~~--~~~~~i~~~~~d~---~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 94 SPQMVEEARERAPEA--GLAGNITFEVGDL---ESLLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFT 163 (230)
T ss_pred CHHHHHHHHHHHHhc--CCccCcEEEEcCc---hhccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEE
Confidence 788889998874211 1113678888874 445688999999998877764 678888888776555444
No 102
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.49 E-value=0.029 Score=50.32 Aligned_cols=94 Identities=22% Similarity=0.276 Sum_probs=59.3
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEecccccc------C--------------------Ch
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHE------L--------------------PG 69 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~------~--------------------~~ 69 (271)
++.+++.+++... .....++.++.+++.. ++..++||+|+++....- + ..
T Consensus 141 s~~~l~~a~~n~~---~~~~~~i~~~~~d~~~-~~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~ 216 (275)
T PRK09328 141 SPEALAVARRNAK---HGLGARVEFLQGDWFE-PLPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDF 216 (275)
T ss_pred CHHHHHHHHHHHH---hCCCCcEEEEEccccC-cCCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHH
Confidence 5667777777642 1122468888888744 334679999998532110 0 01
Q ss_pred -HHHHHHHHHhccCCcEEEEEecCCCCcccHHHHHHHHHHHHHHcCCcchhhh
Q 024162 70 -DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRI 121 (271)
Q Consensus 70 -~~~L~ei~RvLKPGG~l~i~~~~~~~~~e~~~~~~~l~~~l~laGF~~v~~~ 121 (271)
..++.++.++|+|||++++.... ... +.+...+...||.+++..
T Consensus 217 ~~~~~~~~~~~Lk~gG~l~~e~g~-----~~~---~~~~~~l~~~gf~~v~~~ 261 (275)
T PRK09328 217 YRRIIEQAPRYLKPGGWLLLEIGY-----DQG---EAVRALLAAAGFADVETR 261 (275)
T ss_pred HHHHHHHHHHhcccCCEEEEEECc-----hHH---HHHHHHHHhCCCceeEEe
Confidence 45778888999999999985432 111 245566777899866543
No 103
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=96.48 E-value=0.0073 Score=53.33 Aligned_cols=56 Identities=16% Similarity=0.264 Sum_probs=45.0
Q ss_pred CCCeEEEeccCCCCCCC-CCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEe
Q 024162 35 DPQIITQASSLSQLPVE-SFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYK 90 (271)
Q Consensus 35 ~~~v~~~~~d~e~lp~~-~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~ 90 (271)
...|.+.++|+.+++.. ...||.|+-...+++++. ..+++.+.++|||||++++..
T Consensus 96 ~~~v~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~ 155 (218)
T PRK13255 96 AGEITIYCGDFFALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVT 155 (218)
T ss_pred cCceEEEECcccCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEE
Confidence 35688999999888543 358999998888888875 789999999999999765543
No 104
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=96.48 E-value=0.0099 Score=56.04 Aligned_cols=71 Identities=20% Similarity=0.128 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCC-----h-HHHHHHHHHhccCCcEEEEE
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP-----G-DQLLEEISRVLKPGGTILIY 89 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~-----~-~~~L~ei~RvLKPGG~l~i~ 89 (271)
++.|++.+++.... .+....++.+++.. ...+.||+|+++..+|+.. . ..+++++.+.|||||.|++.
T Consensus 229 s~~Al~~A~~nl~~----n~l~~~~~~~D~~~--~~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iV 302 (342)
T PRK09489 229 SAAALESSRATLAA----NGLEGEVFASNVFS--DIKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIV 302 (342)
T ss_pred CHHHHHHHHHHHHH----cCCCCEEEEccccc--ccCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEE
Confidence 56777777765321 11334556666543 2367899999998887632 2 78999999999999999988
Q ss_pred ecC
Q 024162 90 KKL 92 (271)
Q Consensus 90 ~~~ 92 (271)
...
T Consensus 303 an~ 305 (342)
T PRK09489 303 ANA 305 (342)
T ss_pred EeC
Confidence 653
No 105
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=96.42 E-value=0.011 Score=51.24 Aligned_cols=68 Identities=10% Similarity=0.031 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEec
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKK 91 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~ 91 (271)
++.|++.++++... ....++.+..+++.......+.||+|++....+++ ..++++.|+|||+|++...
T Consensus 109 ~~~~~~~a~~~~~~---~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~~-----~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 109 IKTLQWEAKRRLKQ---LGLHNVSVRHGDGWKGWPAYAPFDRILVTAAAPEI-----PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred CHHHHHHHHHHHHH---CCCCceEEEECCcccCCCcCCCcCEEEEccCchhh-----hHHHHHhcCCCcEEEEEEc
Confidence 47778888776421 11235888888876543345789999997665544 4668899999999998765
No 106
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=96.38 E-value=0.018 Score=49.11 Aligned_cols=56 Identities=18% Similarity=0.133 Sum_probs=40.2
Q ss_pred CeEEEeccCCCCC--------CCCCceeEEEeccccc----cCC-------h-HHHHHHHHHhccCCcEEEEEecC
Q 024162 37 QIITQASSLSQLP--------VESFSIDTVLSISSSH----ELP-------G-DQLLEEISRVLKPGGTILIYKKL 92 (271)
Q Consensus 37 ~v~~~~~d~e~lp--------~~~~sfD~V~s~~~l~----~~~-------~-~~~L~ei~RvLKPGG~l~i~~~~ 92 (271)
.+.++++++.+.+ ++.++||+|++....+ |.. . ..++.+++++|+|||++++..+.
T Consensus 73 ~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~ 148 (188)
T TIGR00438 73 NVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQ 148 (188)
T ss_pred CceEEEeeCCChhHHHHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEcc
Confidence 4677777876643 4577899999854321 111 1 57899999999999999997654
No 107
>PRK01581 speE spermidine synthase; Validated
Probab=96.31 E-value=0.017 Score=54.92 Aligned_cols=100 Identities=14% Similarity=0.174 Sum_probs=64.7
Q ss_pred HHHHHHHHHHhCc----hhhhcCCCCeEEEeccCCC-CCCCCCceeEEEecccc------ccCChHHHHHHHHHhccCCc
Q 024162 16 VSAVLNAIRDLGD----EAVEQCDPQIITQASSLSQ-LPVESFSIDTVLSISSS------HELPGDQLLEEISRVLKPGG 84 (271)
Q Consensus 16 s~~mv~~ar~~~~----~~~~~~~~~v~~~~~d~e~-lp~~~~sfD~V~s~~~l------~~~~~~~~L~ei~RvLKPGG 84 (271)
.++|+++|++... .+....++++..+.+|+.. +.-..+.||+|++-..- ..+...++++.+++.|+|||
T Consensus 183 DpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgG 262 (374)
T PRK01581 183 DGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDG 262 (374)
T ss_pred CHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCc
Confidence 5789999996310 0011235788888888875 34456789999985421 11223789999999999999
Q ss_pred EEEEEecCCCCcccHHHHHHHHHHHHHHcCCcch
Q 024162 85 TILIYKKLTSDKGDVDKAISALEGKLLLAGFLDA 118 (271)
Q Consensus 85 ~l~i~~~~~~~~~e~~~~~~~l~~~l~laGF~~v 118 (271)
.|+++...+ .........+...+..+||...
T Consensus 263 V~V~Qs~sp---~~~~~~~~~i~~tL~~af~~v~ 293 (374)
T PRK01581 263 AFVCQSNSP---ADAPLVYWSIGNTIEHAGLTVK 293 (374)
T ss_pred EEEEecCCh---hhhHHHHHHHHHHHHHhCCceE
Confidence 998875432 1122333346667777777643
No 108
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=96.26 E-value=0.016 Score=51.61 Aligned_cols=58 Identities=16% Similarity=0.099 Sum_probs=48.7
Q ss_pred CCCeEEEeccCCCCCCC---CCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEecC
Q 024162 35 DPQIITQASSLSQLPVE---SFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKKL 92 (271)
Q Consensus 35 ~~~v~~~~~d~e~lp~~---~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~~~ 92 (271)
...|.+.++|+.+++.. .+.||+|+-...++.+++ ....+.+.++|+|||++++....
T Consensus 102 ~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~ 165 (226)
T PRK13256 102 GDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVME 165 (226)
T ss_pred cCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence 35789999999988642 257999999888888875 78999999999999999887653
No 109
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=96.25 E-value=0.028 Score=51.02 Aligned_cols=80 Identities=24% Similarity=0.257 Sum_probs=50.4
Q ss_pred EEeccCCCC-CCCC-----CceeEEEeccccccC-Ch----HHHHHHHHHhccCCcEEEEEecCCCC--------cccHH
Q 024162 40 TQASSLSQL-PVES-----FSIDTVLSISSSHEL-PG----DQLLEEISRVLKPGGTILIYKKLTSD--------KGDVD 100 (271)
Q Consensus 40 ~~~~d~e~l-p~~~-----~sfD~V~s~~~l~~~-~~----~~~L~ei~RvLKPGG~l~i~~~~~~~--------~~e~~ 100 (271)
.+..|+.+. |+.. ..||+|++++.+... .+ ..+++.+.+.|||||.|++......+ ...+.
T Consensus 138 Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~~l~ 217 (256)
T PF01234_consen 138 VVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKFPCLP 217 (256)
T ss_dssp EEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEEE---
T ss_pred EEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEeccccc
Confidence 345666544 3443 259999997765433 22 78999999999999999998754321 11122
Q ss_pred HHHHHHHHHHHHcCCcchh
Q 024162 101 KAISALEGKLLLAGFLDAQ 119 (271)
Q Consensus 101 ~~~~~l~~~l~laGF~~v~ 119 (271)
-..+.++..+..+||....
T Consensus 218 l~ee~v~~al~~aG~~i~~ 236 (256)
T PF01234_consen 218 LNEEFVREALEEAGFDIED 236 (256)
T ss_dssp B-HHHHHHHHHHTTEEEEE
T ss_pred CCHHHHHHHHHHcCCEEEe
Confidence 2234667788999997543
No 110
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=96.20 E-value=0.04 Score=53.43 Aligned_cols=74 Identities=23% Similarity=0.257 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCC----CCCCceeEEEecc------ccccCC-----------------
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLP----VESFSIDTVLSIS------SSHELP----------------- 68 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp----~~~~sfD~V~s~~------~l~~~~----------------- 68 (271)
+..|++.+++.... ..-.+|.++.+|+..++ +..++||.|++-. +++..+
T Consensus 286 ~~~rl~~~~~n~~r---~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~ 362 (434)
T PRK14901 286 SASRLKKLQENAQR---LGLKSIKILAADSRNLLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPL 362 (434)
T ss_pred CHHHHHHHHHHHHH---cCCCeEEEEeCChhhcccccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHH
Confidence 45555555554311 01135888889998876 4567999999621 122111
Q ss_pred hHHHHHHHHHhccCCcEEEEEecC
Q 024162 69 GDQLLEEISRVLKPGGTILIYKKL 92 (271)
Q Consensus 69 ~~~~L~ei~RvLKPGG~l~i~~~~ 92 (271)
...+|.+++++|||||+|++++..
T Consensus 363 Q~~iL~~a~~~lkpgG~lvystcs 386 (434)
T PRK14901 363 QAELLESLAPLLKPGGTLVYATCT 386 (434)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCC
Confidence 146799999999999999998865
No 111
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=96.19 E-value=0.038 Score=50.67 Aligned_cols=71 Identities=17% Similarity=0.223 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecC
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKL 92 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~~ 92 (271)
++.|++.+++..... .....+.+..++. .++..++||+|+++...+.+ ..++.+++++|||||+|+++...
T Consensus 191 d~~al~~a~~n~~~n--~~~~~~~~~~~~~--~~~~~~~fDlVvan~~~~~l--~~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 191 DPLAVESARKNAELN--QVSDRLQVKLIYL--EQPIEGKADVIVANILAEVI--KELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred CHHHHHHHHHHHHHc--CCCcceEEEeccc--ccccCCCceEEEEecCHHHH--HHHHHHHHHHcCCCcEEEEEeCc
Confidence 456677776653211 1112344444442 33446799999996543221 67899999999999999998765
No 112
>PRK03612 spermidine synthase; Provisional
Probab=96.16 E-value=0.02 Score=56.90 Aligned_cols=97 Identities=16% Similarity=0.138 Sum_probs=64.3
Q ss_pred HHHHHHHHHHhC--chh--hhcCCCCeEEEeccCCCC-CCCCCceeEEEecccccc------CChHHHHHHHHHhccCCc
Q 024162 16 VSAVLNAIRDLG--DEA--VEQCDPQIITQASSLSQL-PVESFSIDTVLSISSSHE------LPGDQLLEEISRVLKPGG 84 (271)
Q Consensus 16 s~~mv~~ar~~~--~~~--~~~~~~~v~~~~~d~e~l-p~~~~sfD~V~s~~~l~~------~~~~~~L~ei~RvLKPGG 84 (271)
.++|++.+|+.. ... ....+++++++.+|+.+. ...+++||+|++.....+ +...++++.+.+.|||||
T Consensus 330 d~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG 409 (521)
T PRK03612 330 DPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDG 409 (521)
T ss_pred CHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCe
Confidence 578999999831 110 012346788888988753 334578999999654332 223679999999999999
Q ss_pred EEEEEecCCCCcccHHHHHHHHHHHHHHcCC
Q 024162 85 TILIYKKLTSDKGDVDKAISALEGKLLLAGF 115 (271)
Q Consensus 85 ~l~i~~~~~~~~~e~~~~~~~l~~~l~laGF 115 (271)
.++++...+.. . .+....+.+.+...||
T Consensus 410 ~lv~~~~~~~~--~-~~~~~~i~~~l~~~gf 437 (521)
T PRK03612 410 LLVVQSTSPYF--A-PKAFWSIEATLEAAGL 437 (521)
T ss_pred EEEEecCCccc--c-hHHHHHHHHHHHHcCC
Confidence 99987643211 1 2233456677888899
No 113
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=96.16 E-value=0.013 Score=53.75 Aligned_cols=74 Identities=14% Similarity=0.211 Sum_probs=55.5
Q ss_pred cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEec
Q 024162 15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKK 91 (271)
Q Consensus 15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~~ 91 (271)
-|+++.+.++++.... ....+|+....|...+. +.||.|+|+-+++|+.. +.+++.++++|+|||++++...
T Consensus 103 lS~~Q~~~~~~r~~~~--gl~~~v~v~l~d~rd~~---e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I 177 (283)
T COG2230 103 LSEEQLAYAEKRIAAR--GLEDNVEVRLQDYRDFE---EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSI 177 (283)
T ss_pred CCHHHHHHHHHHHHHc--CCCcccEEEeccccccc---cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEe
Confidence 4788888888864211 11235666666666653 34999999999998864 8999999999999999999876
Q ss_pred CC
Q 024162 92 LT 93 (271)
Q Consensus 92 ~~ 93 (271)
..
T Consensus 178 ~~ 179 (283)
T COG2230 178 TG 179 (283)
T ss_pred cC
Confidence 53
No 114
>PRK00811 spermidine synthase; Provisional
Probab=96.12 E-value=0.014 Score=53.44 Aligned_cols=76 Identities=18% Similarity=0.182 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhCchhh--hcCCCCeEEEeccCCCC-CCCCCceeEEEeccccccCC-----hHHHHHHHHHhccCCcEEE
Q 024162 16 VSAVLNAIRDLGDEAV--EQCDPQIITQASSLSQL-PVESFSIDTVLSISSSHELP-----GDQLLEEISRVLKPGGTIL 87 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~--~~~~~~v~~~~~d~e~l-p~~~~sfD~V~s~~~l~~~~-----~~~~L~ei~RvLKPGG~l~ 87 (271)
.+.|++++++...... ...++++.++.+|+... ....++||+|++-....+.+ ..++++.+.+.|+|||.++
T Consensus 109 d~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv 188 (283)
T PRK00811 109 DERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFV 188 (283)
T ss_pred CHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEE
Confidence 6788888988642110 11356788888987643 33567899999854333222 3788999999999999999
Q ss_pred EEec
Q 024162 88 IYKK 91 (271)
Q Consensus 88 i~~~ 91 (271)
++..
T Consensus 189 ~~~~ 192 (283)
T PRK00811 189 AQSG 192 (283)
T ss_pred EeCC
Confidence 8643
No 115
>PRK07402 precorrin-6B methylase; Provisional
Probab=96.11 E-value=0.038 Score=47.37 Aligned_cols=71 Identities=23% Similarity=0.218 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCC-CCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecC
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQ-LPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKL 92 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~-lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~~ 92 (271)
++.|++.++++.+.. ...++.++.+++.. ++.-...+|.|+.... ..-..++++++++|+|||+|++....
T Consensus 73 s~~~~~~a~~n~~~~---~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~~---~~~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 73 DEEVVNLIRRNCDRF---GVKNVEVIEGSAPECLAQLAPAPDRVCIEGG---RPIKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred CHHHHHHHHHHHHHh---CCCCeEEEECchHHHHhhCCCCCCEEEEECC---cCHHHHHHHHHHhcCCCeEEEEEeec
Confidence 567777777654211 11357888888754 3322234676654321 11278999999999999999999865
No 116
>PHA03411 putative methyltransferase; Provisional
Probab=96.07 E-value=0.022 Score=52.19 Aligned_cols=92 Identities=12% Similarity=0.061 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh---------------------HHHHH
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---------------------DQLLE 74 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~---------------------~~~L~ 74 (271)
++.|++.++++. .++.++++|+..+.. ..+||+|+++-.+++... ..++.
T Consensus 97 sp~al~~Ar~n~--------~~v~~v~~D~~e~~~-~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~ 167 (279)
T PHA03411 97 NPEFARIGKRLL--------PEAEWITSDVFEFES-NEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFA 167 (279)
T ss_pred CHHHHHHHHHhC--------cCCEEEECchhhhcc-cCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHh
Confidence 457888887653 357888999987653 468999999766555321 24567
Q ss_pred HHHHhccCCcEEEEEecCCCC-cccHHHHHHHHHHHHHHcCCcch
Q 024162 75 EISRVLKPGGTILIYKKLTSD-KGDVDKAISALEGKLLLAGFLDA 118 (271)
Q Consensus 75 ei~RvLKPGG~l~i~~~~~~~-~~e~~~~~~~l~~~l~laGF~~v 118 (271)
.+.++|+|+|.+++.-.+... +..+ ..++.+..|..+||+-.
T Consensus 168 ~v~~~L~p~G~~~~~yss~~~y~~sl--~~~~y~~~l~~~g~~~~ 210 (279)
T PHA03411 168 DVGYFIVPTGSAGFAYSGRPYYDGTM--KSNKYLKWSKQTGLVTY 210 (279)
T ss_pred hhHheecCCceEEEEEeccccccccC--CHHHHHHHHHhcCcEec
Confidence 778999999988776433211 1111 12366778999999753
No 117
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=96.06 E-value=0.054 Score=49.64 Aligned_cols=90 Identities=17% Similarity=0.128 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEecccc-------------ccCC------------h-
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSS-------------HELP------------G- 69 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l-------------~~~~------------~- 69 (271)
++.+++.+++..... ....++.++++|+.+ +++..+||+|+++-.. ++-+ .
T Consensus 154 s~~al~~A~~n~~~~--~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~ 230 (284)
T TIGR03533 154 SPDALAVAEINIERH--GLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLV 230 (284)
T ss_pred CHHHHHHHHHHHHHc--CCCCcEEEEECchhh-ccCCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHH
Confidence 577788887764211 112358899998743 2456689999986211 1100 1
Q ss_pred HHHHHHHHHhccCCcEEEEEecCCCCcccHHHHHHHHHHHHHHcCCcc
Q 024162 70 DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLD 117 (271)
Q Consensus 70 ~~~L~ei~RvLKPGG~l~i~~~~~~~~~e~~~~~~~l~~~l~laGF~~ 117 (271)
..+++++.+.|+|||++++..... . ..+...+..+||.-
T Consensus 231 ~~il~~a~~~L~~gG~l~~e~g~~-----~----~~v~~~~~~~~~~~ 269 (284)
T TIGR03533 231 RRILAEAADHLNENGVLVVEVGNS-----M----EALEEAYPDVPFTW 269 (284)
T ss_pred HHHHHHHHHhcCCCCEEEEEECcC-----H----HHHHHHHHhCCCce
Confidence 456888999999999999876431 1 14455566677754
No 118
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=96.04 E-value=0.054 Score=48.89 Aligned_cols=92 Identities=22% Similarity=0.325 Sum_probs=63.1
Q ss_pred HHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCCCC
Q 024162 17 SAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLTSD 95 (271)
Q Consensus 17 ~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~~~~ 95 (271)
+.+.+.|++..... ....+|.+..+|+.+.-+++ .||+|+.=. ++ ..++..++.+|||||.+.+..+..
T Consensus 129 ~d~~k~A~~Nl~~~--~l~d~v~~~~~Dv~~~~~~~-~vDav~LDm-----p~PW~~le~~~~~Lkpgg~~~~y~P~v-- 198 (256)
T COG2519 129 EDFAKTARENLSEF--GLGDRVTLKLGDVREGIDEE-DVDAVFLDL-----PDPWNVLEHVSDALKPGGVVVVYSPTV-- 198 (256)
T ss_pred HHHHHHHHHHHHHh--ccccceEEEecccccccccc-ccCEEEEcC-----CChHHHHHHHHHHhCCCcEEEEEcCCH--
Confidence 34455555542111 12233788889998876666 999998742 34 889999999999999999998762
Q ss_pred cccHHHHHHHHHHHHHHcCCcchhhhhh
Q 024162 96 KGDVDKAISALEGKLLLAGFLDAQRIQL 123 (271)
Q Consensus 96 ~~e~~~~~~~l~~~l~laGF~~v~~~~~ 123 (271)
.... .....|...||++++.++.
T Consensus 199 -eQv~----kt~~~l~~~g~~~ie~~E~ 221 (256)
T COG2519 199 -EQVE----KTVEALRERGFVDIEAVET 221 (256)
T ss_pred -HHHH----HHHHHHHhcCccchhhhee
Confidence 1122 3344566679999988764
No 119
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=95.97 E-value=0.065 Score=51.83 Aligned_cols=76 Identities=18% Similarity=0.135 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCC--CCCceeEEEec---c---ccccCC-----------------hH
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPV--ESFSIDTVLSI---S---SSHELP-----------------GD 70 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~--~~~sfD~V~s~---~---~l~~~~-----------------~~ 70 (271)
++.+++.++++.+.. .....+.+..++....++ +.++||+|++- + .++..+ ..
T Consensus 271 ~~~~l~~~~~n~~r~--g~~~~v~~~~~d~~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~ 348 (426)
T TIGR00563 271 HEHRLKRVYENLKRL--GLTIKAETKDGDGRGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQS 348 (426)
T ss_pred CHHHHHHHHHHHHHc--CCCeEEEEeccccccccccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHH
Confidence 455666665553211 011234446666665554 56789999962 1 122211 14
Q ss_pred HHHHHHHHhccCCcEEEEEecCC
Q 024162 71 QLLEEISRVLKPGGTILIYKKLT 93 (271)
Q Consensus 71 ~~L~ei~RvLKPGG~l~i~~~~~ 93 (271)
.+|.+++++|||||+|++++.+-
T Consensus 349 ~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 349 EILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred HHHHHHHHhcCCCcEEEEEeCCC
Confidence 68999999999999999998764
No 120
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=95.97 E-value=0.013 Score=53.40 Aligned_cols=55 Identities=15% Similarity=0.177 Sum_probs=46.1
Q ss_pred CCeEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEe
Q 024162 36 PQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYK 90 (271)
Q Consensus 36 ~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~ 90 (271)
..|.|.+.++..-++..+.||+|+|-+++.++.. ..++..++..|+|||.|++=.
T Consensus 184 ~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 184 KMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred cccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 3578888888765545678999999999988874 889999999999999999754
No 121
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=95.97 E-value=0.048 Score=49.18 Aligned_cols=115 Identities=10% Similarity=0.129 Sum_probs=71.6
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCC--CCCCceeEEEeccc----------------ccc-CC-h-HHHHH
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLP--VESFSIDTVLSISS----------------SHE-LP-G-DQLLE 74 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp--~~~~sfD~V~s~~~----------------l~~-~~-~-~~~L~ 74 (271)
.++|.++|++..+. ..+..+|.++++|+.++. +..++||+|+++-. .+| .. + +++++
T Consensus 77 q~~~a~~A~~nv~l--n~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~ 154 (248)
T COG4123 77 QEEAAEMAQRNVAL--NPLEERIQVIEADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIR 154 (248)
T ss_pred CHHHHHHHHHHHHh--CcchhceeEehhhHHHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHH
Confidence 56778888875321 234567999999998774 45568999999632 112 11 2 78899
Q ss_pred HHHHhccCCcEEEEEecCCCCcccHHHHHHHHHHHHHHcCCcchhhhhhccccCcceeEEEEEeeC
Q 024162 75 EISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQLKSVVPAEVVSFGVKGKK 140 (271)
Q Consensus 75 ei~RvLKPGG~l~i~~~~~~~~~e~~~~~~~l~~~l~laGF~~v~~~~~~~~~~~~~~~~~i~a~K 140 (271)
-..++|||||+|.+.-... .+ .++...+.-.+|.........|-....-..+.+.+.|
T Consensus 155 ~a~~~lk~~G~l~~V~r~e----rl----~ei~~~l~~~~~~~k~i~~V~p~~~k~A~~vLv~~~k 212 (248)
T COG4123 155 AAAKLLKPGGRLAFVHRPE----RL----AEIIELLKSYNLEPKRIQFVYPKIGKAANRVLVEAIK 212 (248)
T ss_pred HHHHHccCCCEEEEEecHH----HH----HHHHHHHHhcCCCceEEEEecCCCCCcceEEEEEEec
Confidence 9999999999999886431 12 2444556666666544333222112222455666666
No 122
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=95.95 E-value=0.014 Score=51.48 Aligned_cols=82 Identities=17% Similarity=0.210 Sum_probs=58.3
Q ss_pred EeccCCCCCC---CCCceeEEEeccccccCCh----HHHHHHHHHhccCCcE-----EEEEecCCCCcccHHHHHHHHHH
Q 024162 41 QASSLSQLPV---ESFSIDTVLSISSSHELPG----DQLLEEISRVLKPGGT-----ILIYKKLTSDKGDVDKAISALEG 108 (271)
Q Consensus 41 ~~~d~e~lp~---~~~sfD~V~s~~~l~~~~~----~~~L~ei~RvLKPGG~-----l~i~~~~~~~~~e~~~~~~~l~~ 108 (271)
.+.|.-+.|+ +++.||+|.++.++.++++ .+.+..+++.|+|+|. |++..+.+-....---....+..
T Consensus 88 ~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~ 167 (219)
T PF11968_consen 88 LQQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLRE 167 (219)
T ss_pred eeeccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHH
Confidence 4456666666 4779999999999999986 6789999999999999 99887754110000001124556
Q ss_pred HHHHcCCcchhhhh
Q 024162 109 KLLLAGFLDAQRIQ 122 (271)
Q Consensus 109 ~l~laGF~~v~~~~ 122 (271)
.+..-||..+....
T Consensus 168 im~~LGf~~~~~~~ 181 (219)
T PF11968_consen 168 IMESLGFTRVKYKK 181 (219)
T ss_pred HHHhCCcEEEEEEe
Confidence 68889999876643
No 123
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=95.95 E-value=0.031 Score=52.52 Aligned_cols=91 Identities=15% Similarity=0.049 Sum_probs=57.0
Q ss_pred CccEEEEecCCcccHHHHHHHHHHhCchhh---hcCCCCeEEEeccCCCCC----CCC--CceeEEEeccccccCC-h--
Q 024162 2 QSAVLALSEDKILPVSAVLNAIRDLGDEAV---EQCDPQIITQASSLSQLP----VES--FSIDTVLSISSSHELP-G-- 69 (271)
Q Consensus 2 ~~~vl~~td~~~~~s~~mv~~ar~~~~~~~---~~~~~~v~~~~~d~e~lp----~~~--~sfD~V~s~~~l~~~~-~-- 69 (271)
....++-+|.+...+.+..+..++...... ....-...|+.+|..... +.+ ..||+|-+-+++|+.- +
T Consensus 84 ~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~ 163 (331)
T PF03291_consen 84 KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEE 163 (331)
T ss_dssp T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHH
Confidence 346678888877776665555533211100 011234566777664321 333 5999999999998863 2
Q ss_pred --HHHHHHHHHhccCCcEEEEEecC
Q 024162 70 --DQLLEEISRVLKPGGTILIYKKL 92 (271)
Q Consensus 70 --~~~L~ei~RvLKPGG~l~i~~~~ 92 (271)
..+|..+.+.|||||+|+.+.+.
T Consensus 164 ~ar~~l~Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 164 KARQFLKNVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp HHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred HHHHHHHHHHHhcCCCCEEEEEecC
Confidence 67999999999999999999876
No 124
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=95.94 E-value=0.016 Score=52.51 Aligned_cols=65 Identities=17% Similarity=0.305 Sum_probs=47.5
Q ss_pred cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEec
Q 024162 15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKK 91 (271)
Q Consensus 15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~ 91 (271)
.|..|.+..++++- .+. +..+..-.+..||+|.+.+.+-.... ..+|++|++.|+|+|++++.-.
T Consensus 124 ~S~~Mr~rL~~kg~--------~vl----~~~~w~~~~~~fDvIscLNvLDRc~~P~~LL~~i~~~l~p~G~lilAvV 189 (265)
T PF05219_consen 124 ASPPMRWRLSKKGF--------TVL----DIDDWQQTDFKFDVISCLNVLDRCDRPLTLLRDIRRALKPNGRLILAVV 189 (265)
T ss_pred CCHHHHHHHHhCCC--------eEE----ehhhhhccCCceEEEeehhhhhccCCHHHHHHHHHHHhCCCCEEEEEEE
Confidence 36788888888761 121 12223233568999999998876654 8999999999999999998743
No 125
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=95.89 E-value=0.045 Score=51.10 Aligned_cols=68 Identities=21% Similarity=0.223 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhCchhhh--cCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEE
Q 024162 16 VSAVLNAIRDLGDEAVE--QCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTIL 87 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~--~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~ 87 (271)
++.|++.++++...... .....+.|.+++++.+ +++||+|++..+++|+++ ..+++.+.+ +.+||.++
T Consensus 175 S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liI 247 (315)
T PLN02585 175 SAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLII 247 (315)
T ss_pred CHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEE
Confidence 78899999887532100 0124578888887654 578999999988888765 345565554 45555544
No 126
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=95.88 E-value=0.0049 Score=48.71 Aligned_cols=38 Identities=21% Similarity=0.518 Sum_probs=29.4
Q ss_pred ceeEEEeccccccCC----h---HHHHHHHHHhccCCcEEEEEec
Q 024162 54 SIDTVLSISSSHELP----G---DQLLEEISRVLKPGGTILIYKK 91 (271)
Q Consensus 54 sfD~V~s~~~l~~~~----~---~~~L~ei~RvLKPGG~l~i~~~ 91 (271)
.||+|++.++.-|++ | ..+++.+++.|+|||.|++...
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ 45 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQ 45 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE--
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCC
Confidence 499999988877765 2 5689999999999999998753
No 127
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=95.85 E-value=0.099 Score=50.60 Aligned_cols=73 Identities=18% Similarity=0.196 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCC--CCCCceeEEEeccc------------cccCCh-----------H
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLP--VESFSIDTVLSISS------------SHELPG-----------D 70 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp--~~~~sfD~V~s~~~------------l~~~~~-----------~ 70 (271)
++.|++.++++... .+..+.++++|+..++ +..++||.|++... ..|... .
T Consensus 277 s~~~l~~~~~n~~~----~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~ 352 (427)
T PRK10901 277 DAQRLERVRENLQR----LGLKATVIVGDARDPAQWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQS 352 (427)
T ss_pred CHHHHHHHHHHHHH----cCCCeEEEEcCcccchhhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHH
Confidence 45666666665321 1234678889988764 34678999995221 112111 3
Q ss_pred HHHHHHHHhccCCcEEEEEecC
Q 024162 71 QLLEEISRVLKPGGTILIYKKL 92 (271)
Q Consensus 71 ~~L~ei~RvLKPGG~l~i~~~~ 92 (271)
.+|.+++++|||||+|++++..
T Consensus 353 ~iL~~a~~~LkpGG~lvystcs 374 (427)
T PRK10901 353 EILDALWPLLKPGGTLLYATCS 374 (427)
T ss_pred HHHHHHHHhcCCCCEEEEEeCC
Confidence 6899999999999999999865
No 128
>PRK04457 spermidine synthase; Provisional
Probab=95.85 E-value=0.037 Score=50.15 Aligned_cols=75 Identities=12% Similarity=0.154 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCC-CCCCCceeEEEecc-cccc----CChHHHHHHHHHhccCCcEEEEE
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQL-PVESFSIDTVLSIS-SSHE----LPGDQLLEEISRVLKPGGTILIY 89 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~l-p~~~~sfD~V~s~~-~l~~----~~~~~~L~ei~RvLKPGG~l~i~ 89 (271)
.+.|++.+++... ......++.++.+|+... .-..++||+|+.-. .... +...++++++.++|+|||+|++.
T Consensus 99 dp~vi~~A~~~f~--~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 99 NPQVIAVARNHFE--LPENGERFEVIEADGAEYIAVHRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred CHHHHHHHHHHcC--CCCCCCceEEEECCHHHHHHhCCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 5788999998742 112236788888987532 32346899999732 1111 22379999999999999999997
Q ss_pred ecC
Q 024162 90 KKL 92 (271)
Q Consensus 90 ~~~ 92 (271)
.+.
T Consensus 177 ~~~ 179 (262)
T PRK04457 177 LWS 179 (262)
T ss_pred cCC
Confidence 665
No 129
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=95.82 E-value=0.017 Score=50.58 Aligned_cols=41 Identities=32% Similarity=0.590 Sum_probs=36.8
Q ss_pred CCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEecC
Q 024162 52 SFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKKL 92 (271)
Q Consensus 52 ~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~~~ 92 (271)
..+||+|++++++|.++- +.+++...++|+|||.|+++-+-
T Consensus 100 ~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF 143 (204)
T PF06080_consen 100 PESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPF 143 (204)
T ss_pred CCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCc
Confidence 569999999999998874 88999999999999999999764
No 130
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=95.75 E-value=0.038 Score=50.02 Aligned_cols=74 Identities=11% Similarity=0.026 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEecc---cc---c--------cCC--------h-HHH
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSIS---SS---H--------ELP--------G-DQL 72 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~---~l---~--------~~~--------~-~~~ 72 (271)
++.+++.+++.... ....++.+..+|+..++.....||+|+.-. .. . +.. . .++
T Consensus 105 ~~~~l~~~~~n~~~---~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~i 181 (264)
T TIGR00446 105 SKSRTKVLIANINR---CGVLNVAVTNFDGRVFGAAVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKEL 181 (264)
T ss_pred CHHHHHHHHHHHHH---cCCCcEEEecCCHHHhhhhccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHH
Confidence 44555555554311 111357888888887766666799999621 11 0 100 1 458
Q ss_pred HHHHHHhccCCcEEEEEecC
Q 024162 73 LEEISRVLKPGGTILIYKKL 92 (271)
Q Consensus 73 L~ei~RvLKPGG~l~i~~~~ 92 (271)
|.++.+.|||||+|+.++-.
T Consensus 182 L~~a~~~lkpgG~lvYstcs 201 (264)
T TIGR00446 182 IDSAFDALKPGGVLVYSTCS 201 (264)
T ss_pred HHHHHHhcCCCCEEEEEeCC
Confidence 99999999999999988765
No 131
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=95.71 E-value=0.017 Score=52.79 Aligned_cols=85 Identities=18% Similarity=0.198 Sum_probs=59.7
Q ss_pred CCeEEEeccCCCCCCCC---CceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCC-C--Cc-----ccHHHHH
Q 024162 36 PQIITQASSLSQLPVES---FSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLT-S--DK-----GDVDKAI 103 (271)
Q Consensus 36 ~~v~~~~~d~e~lp~~~---~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~~-~--~~-----~e~~~~~ 103 (271)
.++....||...+..++ ++||+|++.+-+--.++ -+.|..|+++|||||.++=.-+.. + .. ..+.-++
T Consensus 144 ~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~~~~~~sveLs~ 223 (270)
T PF07942_consen 144 SNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPMSIPNEMSVELSL 223 (270)
T ss_pred CceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEEecCCccccCCCCCCCCCcccCCCH
Confidence 56788889988876555 79999998765555555 789999999999999665433211 1 10 0123346
Q ss_pred HHHHHHHHHcCCcchhh
Q 024162 104 SALEGKLLLAGFLDAQR 120 (271)
Q Consensus 104 ~~l~~~l~laGF~~v~~ 120 (271)
+++...+...||..+..
T Consensus 224 eEi~~l~~~~GF~~~~~ 240 (270)
T PF07942_consen 224 EEIKELIEKLGFEIEKE 240 (270)
T ss_pred HHHHHHHHHCCCEEEEE
Confidence 68888888899987654
No 132
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=95.71 E-value=0.077 Score=46.00 Aligned_cols=77 Identities=18% Similarity=0.208 Sum_probs=51.0
Q ss_pred CCCeEEEeccCCC-CC--CCCCceeEEEeccccccC---------ChHHHHHHHHHhccCCcEEEEEecCCCCcccHHHH
Q 024162 35 DPQIITQASSLSQ-LP--VESFSIDTVLSISSSHEL---------PGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKA 102 (271)
Q Consensus 35 ~~~v~~~~~d~e~-lp--~~~~sfD~V~s~~~l~~~---------~~~~~L~ei~RvLKPGG~l~i~~~~~~~~~e~~~~ 102 (271)
..++.++++++.. +. ++++++|.|+..+.--|. ..+.++.+++++|+|||.|.+.+-. ...
T Consensus 66 l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~-------~~y 138 (195)
T PF02390_consen 66 LKNVRFLRGDARELLRRLFPPGSVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDV-------EEY 138 (195)
T ss_dssp TSSEEEEES-CTTHHHHHSTTTSEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES--------HHH
T ss_pred ccceEEEEccHHHHHhhcccCCchheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCC-------HHH
Confidence 3688999999876 33 567999999998752222 2389999999999999999998743 222
Q ss_pred HHHHHHHHHH--cCCcch
Q 024162 103 ISALEGKLLL--AGFLDA 118 (271)
Q Consensus 103 ~~~l~~~l~l--aGF~~v 118 (271)
...+...+.. .+|..+
T Consensus 139 ~~~~~~~~~~~~~~f~~~ 156 (195)
T PF02390_consen 139 AEWMLEQFEESHPGFENI 156 (195)
T ss_dssp HHHHHHHHHHHSTTEEEE
T ss_pred HHHHHHHHHhcCcCeEEc
Confidence 2344444544 366554
No 133
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=95.66 E-value=0.13 Score=46.93 Aligned_cols=95 Identities=20% Similarity=0.196 Sum_probs=57.5
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccc-------------cccCC------------h-
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISS-------------SHELP------------G- 69 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~-------------l~~~~------------~- 69 (271)
++.+++.+++..... ....++.++++++.+ +++...||+|+++-. .+|-+ .
T Consensus 147 s~~al~~a~~n~~~~--~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~ 223 (284)
T TIGR00536 147 SPDALAVAEENAEKN--QLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNIL 223 (284)
T ss_pred CHHHHHHHHHHHHHc--CCCCcEEEEECchhc-cCcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHH
Confidence 566777777653211 111348899998865 455558999999521 11111 1
Q ss_pred HHHHHHHHHhccCCcEEEEEecCCCCcccHHHHHHHHHHHHH-HcCCcchhhh
Q 024162 70 DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLL-LAGFLDAQRI 121 (271)
Q Consensus 70 ~~~L~ei~RvLKPGG~l~i~~~~~~~~~e~~~~~~~l~~~l~-laGF~~v~~~ 121 (271)
..++.++.+.|+|||.|++..... ... .+...+. ..||.+++..
T Consensus 224 ~~ii~~a~~~L~~gG~l~~e~g~~-----q~~---~~~~~~~~~~~~~~~~~~ 268 (284)
T TIGR00536 224 RQIIELAPDYLKPNGFLVCEIGNW-----QQK---SLKELLRIKFTWYDVENG 268 (284)
T ss_pred HHHHHHHHHhccCCCEEEEEECcc-----HHH---HHHHHHHhcCCCceeEEe
Confidence 467888999999999998876541 111 3333344 3588765543
No 134
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=95.52 E-value=0.11 Score=50.23 Aligned_cols=94 Identities=18% Similarity=0.216 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCC-CCceeEEEecccccc-------------------C--Ch----
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVE-SFSIDTVLSISSSHE-------------------L--PG---- 69 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~-~~sfD~V~s~~~l~~-------------------~--~~---- 69 (271)
++.|++.+++.... .+.++.++++|+.+..++ ..+||+|+++-.... . .+
T Consensus 284 S~~ALe~AreNa~~----~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~ 359 (423)
T PRK14966 284 SPPALETARKNAAD----LGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSC 359 (423)
T ss_pred CHHHHHHHHHHHHH----cCCcEEEEEcchhccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHH
Confidence 67888888877421 224688999998654332 458999999653210 0 01
Q ss_pred -HHHHHHHHHhccCCcEEEEEecCCCCcccHHHHHHHHHHHHHHcCCcchhhh
Q 024162 70 -DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRI 121 (271)
Q Consensus 70 -~~~L~ei~RvLKPGG~l~i~~~~~~~~~e~~~~~~~l~~~l~laGF~~v~~~ 121 (271)
..++.++.+.|+|||.+++.... ... +.+...+...||..++..
T Consensus 360 yr~Ii~~a~~~LkpgG~lilEiG~-----~Q~---e~V~~ll~~~Gf~~v~v~ 404 (423)
T PRK14966 360 IRTLAQGAPDRLAEGGFLLLEHGF-----DQG---AAVRGVLAENGFSGVETL 404 (423)
T ss_pred HHHHHHHHHHhcCCCcEEEEEECc-----cHH---HHHHHHHHHCCCcEEEEE
Confidence 35666677899999998875533 111 245566777899765543
No 135
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=95.49 E-value=0.059 Score=52.42 Aligned_cols=74 Identities=19% Similarity=0.156 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEecc---c---c------ccCCh-----------HHH
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSIS---S---S------HELPG-----------DQL 72 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~---~---l------~~~~~-----------~~~ 72 (271)
++.|++.++++.... .-.+|.++.+++..++ ++++||+|+.-. . + .|... ..+
T Consensus 284 s~~~l~~~~~~~~~~---g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~i 359 (445)
T PRK14904 284 YPQKLEKIRSHASAL---GITIIETIEGDARSFS-PEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAEL 359 (445)
T ss_pred CHHHHHHHHHHHHHh---CCCeEEEEeCcccccc-cCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHH
Confidence 566666666653211 1135788999988775 567899999621 1 0 11111 358
Q ss_pred HHHHHHhccCCcEEEEEecCC
Q 024162 73 LEEISRVLKPGGTILIYKKLT 93 (271)
Q Consensus 73 L~ei~RvLKPGG~l~i~~~~~ 93 (271)
|.++++.|||||+|++++.+.
T Consensus 360 L~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 360 LDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred HHHHHHhcCCCcEEEEEeCCC
Confidence 999999999999999998764
No 136
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=95.45 E-value=0.12 Score=47.81 Aligned_cols=71 Identities=21% Similarity=0.315 Sum_probs=50.6
Q ss_pred CceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCCCCcccHHHHHHHHHHHHHHcCCcchhhhhhccccCcce
Q 024162 53 FSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQLKSVVPAEV 131 (271)
Q Consensus 53 ~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~~~~~~e~~~~~~~l~~~l~laGF~~v~~~~~~~~~~~~~ 131 (271)
..||+|+++-.- .. ..+..++.+.|||||+++++-... +-...+...+..+||..+......
T Consensus 228 ~~~DvIVANILA---~vl~~La~~~~~~lkpgg~lIlSGIl~-------~q~~~V~~a~~~~gf~v~~~~~~~------- 290 (300)
T COG2264 228 GPFDVIVANILA---EVLVELAPDIKRLLKPGGRLILSGILE-------DQAESVAEAYEQAGFEVVEVLERE------- 290 (300)
T ss_pred CcccEEEehhhH---HHHHHHHHHHHHHcCCCceEEEEeehH-------hHHHHHHHHHHhCCCeEeEEEecC-------
Confidence 599999996411 11 678899999999999999986442 112355666778999987665432
Q ss_pred eEEEEEeeC
Q 024162 132 VSFGVKGKK 140 (271)
Q Consensus 132 ~~~~i~a~K 140 (271)
.+++++.+|
T Consensus 291 eW~~i~~kr 299 (300)
T COG2264 291 EWVAIVGKR 299 (300)
T ss_pred CEEEEEEEc
Confidence 477777776
No 137
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=95.36 E-value=0.13 Score=50.07 Aligned_cols=75 Identities=13% Similarity=0.129 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCC-CCCCceeEEEecc---ccccC---C----------------h-HH
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLP-VESFSIDTVLSIS---SSHEL---P----------------G-DQ 71 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp-~~~~sfD~V~s~~---~l~~~---~----------------~-~~ 71 (271)
++.+++.++++.... .-.++.+.++|+..++ +..++||.|++-. .+..+ + . .+
T Consensus 271 s~~rl~~~~~n~~r~---g~~~v~~~~~Da~~l~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~ 347 (431)
T PRK14903 271 SREKIQLVEKHAKRL---KLSSIEIKIADAERLTEYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLR 347 (431)
T ss_pred CHHHHHHHHHHHHHc---CCCeEEEEECchhhhhhhhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHH
Confidence 456666666653211 1134788899988776 5567899999621 11111 1 1 45
Q ss_pred HHHHHHHhccCCcEEEEEecCC
Q 024162 72 LLEEISRVLKPGGTILIYKKLT 93 (271)
Q Consensus 72 ~L~ei~RvLKPGG~l~i~~~~~ 93 (271)
+|.++++.|||||+|++++.+-
T Consensus 348 iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 348 IVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred HHHHHHHhcCCCCEEEEEECCC
Confidence 6889999999999999998764
No 138
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.32 E-value=0.014 Score=52.13 Aligned_cols=98 Identities=15% Similarity=0.135 Sum_probs=66.8
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCC-CCC-CCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecC
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLS-QLP-VESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKL 92 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e-~lp-~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~ 92 (271)
|++|++.+++|.--. ...++++. -++ ..+..||+|.+.-++.++.+ +.++.-+...|+|||.|.|+.-.
T Consensus 156 S~nMl~kA~eKg~YD--------~L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~ 227 (287)
T COG4976 156 SENMLAKAHEKGLYD--------TLYVAEAVLFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVET 227 (287)
T ss_pred hHHHHHHHHhccchH--------HHHHHHHHHHhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecc
Confidence 899999999986211 11223333 222 55788999999999999988 89999999999999999998532
Q ss_pred CCC-----cccHH---HHHHHHHHHHHHcCCcchhhh
Q 024162 93 TSD-----KGDVD---KAISALEGKLLLAGFLDAQRI 121 (271)
Q Consensus 93 ~~~-----~~e~~---~~~~~l~~~l~laGF~~v~~~ 121 (271)
... ..... ..-..+...+...||..++..
T Consensus 228 l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~ 264 (287)
T COG4976 228 LPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIE 264 (287)
T ss_pred cCCCCCeecchhhhhccchHHHHHHHHhcCceEEEee
Confidence 211 11111 112345677889999876554
No 139
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=95.31 E-value=0.035 Score=51.97 Aligned_cols=68 Identities=13% Similarity=0.017 Sum_probs=47.5
Q ss_pred cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEe
Q 024162 15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYK 90 (271)
Q Consensus 15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~ 90 (271)
.++.|++.++++... ....++.++++|+...+.....||+|++......+ ...+.+.|+|||++++..
T Consensus 113 is~~~l~~Ar~~l~~---~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~~g~~~i-----p~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 113 YSRKICEIAKRNVRR---LGIENVIFVCGDGYYGVPEFAPYDVIFVTVGVDEV-----PETWFTQLKEGGRVIVPI 180 (322)
T ss_pred CCHHHHHHHHHHHHH---cCCCcEEEEeCChhhcccccCCccEEEECCchHHh-----HHHHHHhcCCCCEEEEEe
Confidence 356788888775321 11145788899987766566789999987544333 345789999999998865
No 140
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=95.27 E-value=0.02 Score=46.27 Aligned_cols=73 Identities=25% Similarity=0.345 Sum_probs=48.1
Q ss_pred CCCeEEEeccCCC-CCCCCCceeEEEe-ccccccCC---hHHHHHHHHHhccCCcEEEEEecCCCCcccHHHHHHHHHHH
Q 024162 35 DPQIITQASSLSQ-LPVESFSIDTVLS-ISSSHELP---GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGK 109 (271)
Q Consensus 35 ~~~v~~~~~d~e~-lp~~~~sfD~V~s-~~~l~~~~---~~~~L~ei~RvLKPGG~l~i~~~~~~~~~e~~~~~~~l~~~ 109 (271)
+..+....+|+.. ++--...||+|+. -++...-+ +.+++++|+|.++|||+|...... ..+++.
T Consensus 30 ~v~L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys~a-----------~~Vr~~ 98 (124)
T PF05430_consen 30 NVTLTLWFGDAREMLPQLDARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLATYSSA-----------GAVRRA 98 (124)
T ss_dssp TEEEEEEES-HHHHHHHB-T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEES--B-----------HHHHHH
T ss_pred CEEEEEEEcHHHHHHHhCcccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEEeech-----------HHHHHH
Confidence 3455667788753 3433478999997 23322222 288999999999999999866543 267889
Q ss_pred HHHcCCcch
Q 024162 110 LLLAGFLDA 118 (271)
Q Consensus 110 l~laGF~~v 118 (271)
|..+||...
T Consensus 99 L~~aGF~v~ 107 (124)
T PF05430_consen 99 LQQAGFEVE 107 (124)
T ss_dssp HHHCTEEEE
T ss_pred HHHcCCEEE
Confidence 999999853
No 141
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=95.26 E-value=0.16 Score=38.22 Aligned_cols=56 Identities=36% Similarity=0.504 Sum_probs=43.0
Q ss_pred eEEEeccCCC--CCCCC-CceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecCC
Q 024162 38 IITQASSLSQ--LPVES-FSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLT 93 (271)
Q Consensus 38 v~~~~~d~e~--lp~~~-~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~~~ 93 (271)
+.+..++... +++.. ..||++......++......+.++.++|+|+|.+++.....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 100 VDFVVADALGGVLPFEDSASFDLVISLLVLHLLPPAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred eEEEEeccccCCCCCCCCCceeEEeeeeehhcCCHHHHHHHHHHhcCCCcEEEEEeccC
Confidence 5677777765 78887 59999944444444445889999999999999999998764
No 142
>PLN02366 spermidine synthase
Probab=95.24 E-value=0.061 Score=50.04 Aligned_cols=75 Identities=19% Similarity=0.242 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhCch-hhhcCCCCeEEEeccCCCC--CCCCCceeEEEeccccccC-----ChHHHHHHHHHhccCCcEEE
Q 024162 16 VSAVLNAIRDLGDE-AVEQCDPQIITQASSLSQL--PVESFSIDTVLSISSSHEL-----PGDQLLEEISRVLKPGGTIL 87 (271)
Q Consensus 16 s~~mv~~ar~~~~~-~~~~~~~~v~~~~~d~e~l--p~~~~sfD~V~s~~~l~~~-----~~~~~L~ei~RvLKPGG~l~ 87 (271)
.+.|++.+|+.... .....++++.++.+|+... ..+.+.||+|++-....+. ...++++.+++.|+|||.++
T Consensus 124 D~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv 203 (308)
T PLN02366 124 DKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVC 203 (308)
T ss_pred CHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEE
Confidence 46789999886421 1112456889999986432 1235689999985432221 23689999999999999998
Q ss_pred EEe
Q 024162 88 IYK 90 (271)
Q Consensus 88 i~~ 90 (271)
++.
T Consensus 204 ~q~ 206 (308)
T PLN02366 204 TQA 206 (308)
T ss_pred ECc
Confidence 764
No 143
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=94.88 E-value=0.12 Score=50.16 Aligned_cols=73 Identities=18% Similarity=0.140 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCC--CCCCceeEEEeccc---cc---------cCC-----------hH
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLP--VESFSIDTVLSISS---SH---------ELP-----------GD 70 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp--~~~~sfD~V~s~~~---l~---------~~~-----------~~ 70 (271)
++.+++.+++.... ..-.++.++++|+..++ ++ ++||+|++... +. |.. ..
T Consensus 284 ~~~~l~~~~~n~~~---~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~ 359 (444)
T PRK14902 284 HEHKLKLIEENAKR---LGLTNIETKALDARKVHEKFA-EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQL 359 (444)
T ss_pred CHHHHHHHHHHHHH---cCCCeEEEEeCCcccccchhc-ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHH
Confidence 35566666654311 11134888999988763 33 78999997321 10 100 03
Q ss_pred HHHHHHHHhccCCcEEEEEecC
Q 024162 71 QLLEEISRVLKPGGTILIYKKL 92 (271)
Q Consensus 71 ~~L~ei~RvLKPGG~l~i~~~~ 92 (271)
.+|.+++++|||||+|++++-.
T Consensus 360 ~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 360 EILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred HHHHHHHHHcCCCCEEEEEcCC
Confidence 5799999999999999987754
No 144
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=94.87 E-value=0.1 Score=48.78 Aligned_cols=56 Identities=20% Similarity=0.155 Sum_probs=43.3
Q ss_pred CeEEEeccCC------CCCCCCCceeEEEeccccccC-Ch----HHHHHHHHHhccCCcEEEEEecC
Q 024162 37 QIITQASSLS------QLPVESFSIDTVLSISSSHEL-PG----DQLLEEISRVLKPGGTILIYKKL 92 (271)
Q Consensus 37 ~v~~~~~d~e------~lp~~~~sfD~V~s~~~l~~~-~~----~~~L~ei~RvLKPGG~l~i~~~~ 92 (271)
.+.|..+|-. .+++++.+||+|-+-+++|+. .+ +-+|+.+.+.|||||.|+-+.+.
T Consensus 173 ~a~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPd 239 (389)
T KOG1975|consen 173 TAVFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPD 239 (389)
T ss_pred eeEEEEeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCc
Confidence 4566666643 345667779999998888874 32 67899999999999999988876
No 145
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=94.82 E-value=0.14 Score=47.49 Aligned_cols=73 Identities=14% Similarity=0.140 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEecccc-------------ccCC-----------h--
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSS-------------HELP-----------G-- 69 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l-------------~~~~-----------~-- 69 (271)
++.+++.+++..... ....++.++++|+.. +++..+||+|+++-.. ++.+ .
T Consensus 166 s~~al~~A~~n~~~~--~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~ 242 (307)
T PRK11805 166 SPDALAVAEINIERH--GLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLV 242 (307)
T ss_pred CHHHHHHHHHHHHHh--CCCCcEEEEECchhh-hCCCCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHH
Confidence 567777777664211 112358899999754 2345689999986211 1111 1
Q ss_pred HHHHHHHHHhccCCcEEEEEec
Q 024162 70 DQLLEEISRVLKPGGTILIYKK 91 (271)
Q Consensus 70 ~~~L~ei~RvLKPGG~l~i~~~ 91 (271)
..+++++.+.|+|||++++...
T Consensus 243 ~~i~~~a~~~L~pgG~l~~E~g 264 (307)
T PRK11805 243 RRILAEAPDYLTEDGVLVVEVG 264 (307)
T ss_pred HHHHHHHHHhcCCCCEEEEEEC
Confidence 4678889999999999998654
No 146
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=94.80 E-value=0.13 Score=46.65 Aligned_cols=75 Identities=15% Similarity=0.134 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhCchh-hhcCCCCeEEEeccCCC-CCCCCCceeEEEecccccc-----CChHHHHHHHHHhccCCcEEEE
Q 024162 16 VSAVLNAIRDLGDEA-VEQCDPQIITQASSLSQ-LPVESFSIDTVLSISSSHE-----LPGDQLLEEISRVLKPGGTILI 88 (271)
Q Consensus 16 s~~mv~~ar~~~~~~-~~~~~~~v~~~~~d~e~-lp~~~~sfD~V~s~~~l~~-----~~~~~~L~ei~RvLKPGG~l~i 88 (271)
.+.|++.+++..... ......++.++.+|... +.-..+.||+|++-..... +...++++.+.+.|+|||.+++
T Consensus 105 d~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~ 184 (270)
T TIGR00417 105 DEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVA 184 (270)
T ss_pred CHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEE
Confidence 567788888753110 01123567777776543 2222568999998543221 1136889999999999999998
Q ss_pred Ee
Q 024162 89 YK 90 (271)
Q Consensus 89 ~~ 90 (271)
..
T Consensus 185 ~~ 186 (270)
T TIGR00417 185 QS 186 (270)
T ss_pred cC
Confidence 74
No 147
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=94.79 E-value=0.051 Score=47.76 Aligned_cols=69 Identities=17% Similarity=0.142 Sum_probs=46.7
Q ss_pred cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEec
Q 024162 15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKK 91 (271)
Q Consensus 15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~ 91 (271)
..+.+++.|+++-.. ....+|.++++|....--....||.|+.......++ ..+.+.||+||+|++-..
T Consensus 105 ~~~~l~~~A~~~l~~---~~~~nv~~~~gdg~~g~~~~apfD~I~v~~a~~~ip-----~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 105 RDPELAERARRNLAR---LGIDNVEVVVGDGSEGWPEEAPFDRIIVTAAVPEIP-----EALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp SBHHHHHHHHHHHHH---HTTHSEEEEES-GGGTTGGG-SEEEEEESSBBSS-------HHHHHTEEEEEEEEEEES
T ss_pred ccHHHHHHHHHHHHH---hccCceeEEEcchhhccccCCCcCEEEEeeccchHH-----HHHHHhcCCCcEEEEEEc
Confidence 356777888776321 122478999999865433456899999987765554 558888999999998654
No 148
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=94.67 E-value=0.052 Score=47.14 Aligned_cols=71 Identities=24% Similarity=0.270 Sum_probs=48.9
Q ss_pred eEEEeccCC-CCC-CCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCCCCcccHHHHHHHHHHHHHHcC
Q 024162 38 IITQASSLS-QLP-VESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAG 114 (271)
Q Consensus 38 v~~~~~d~e-~lp-~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~~~~~~e~~~~~~~l~~~l~laG 114 (271)
+..+++|++ .|+ |++.+||.|+.+.+++++.. ..+|.|+.|+ |.+.+++-++- +-+ ..+..+.+.|
T Consensus 57 v~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~~P~~vL~EmlRV---gr~~IVsFPNF---g~W-----~~R~~l~~~G 125 (193)
T PF07021_consen 57 VSVIQGDLDEGLADFPDQSFDYVILSQTLQAVRRPDEVLEEMLRV---GRRAIVSFPNF---GHW-----RNRLQLLLRG 125 (193)
T ss_pred CCEEECCHHHhHhhCCCCCccEEehHhHHHhHhHHHHHHHHHHHh---cCeEEEEecCh---HHH-----HHHHHHHhcC
Confidence 345778886 454 99999999999999999876 8999999888 44556555441 111 2233455666
Q ss_pred Ccchh
Q 024162 115 FLDAQ 119 (271)
Q Consensus 115 F~~v~ 119 (271)
=+.+.
T Consensus 126 rmPvt 130 (193)
T PF07021_consen 126 RMPVT 130 (193)
T ss_pred CCCCC
Confidence 66544
No 149
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=94.65 E-value=0.072 Score=46.55 Aligned_cols=52 Identities=17% Similarity=0.251 Sum_probs=35.8
Q ss_pred HHHHHHHHHhccCCcEEEEEecCCCCcccHH-------HHHHHHHHHHHHcCCcchhhh
Q 024162 70 DQLLEEISRVLKPGGTILIYKKLTSDKGDVD-------KAISALEGKLLLAGFLDAQRI 121 (271)
Q Consensus 70 ~~~L~ei~RvLKPGG~l~i~~~~~~~~~e~~-------~~~~~l~~~l~laGF~~v~~~ 121 (271)
..+.+++++.|||||.+.+.++....-..+. .....+..+...+||.-..+.
T Consensus 146 ~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a~veaaGFkl~aeS 204 (238)
T COG4798 146 AKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRIDPAVVIAEVEAAGFKLEAES 204 (238)
T ss_pred HHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccChHHHHHHHHhhcceeeeee
Confidence 8899999999999999999997643111111 112355677888999865443
No 150
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=94.64 E-value=0.1 Score=51.08 Aligned_cols=73 Identities=27% Similarity=0.388 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCC-h----------HHHHHHHHHhccCCc
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP-G----------DQLLEEISRVLKPGG 84 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~-~----------~~~L~ei~RvLKPGG 84 (271)
|...++.+..+.. ....-+.|...++..+.|+++|||+|+.-..++.+. + ...+.+++|+|+|||
T Consensus 80 S~V~V~~m~~~~~----~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~g 155 (482)
T KOG2352|consen 80 SSVVVAAMQVRNA----KERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGG 155 (482)
T ss_pred cHHHHHHHHhccc----cCCcceEEEEecchhccCCCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCC
Confidence 4445555555542 233567889999999999999999999866554332 1 456789999999999
Q ss_pred EEEEEecC
Q 024162 85 TILIYKKL 92 (271)
Q Consensus 85 ~l~i~~~~ 92 (271)
+++..+..
T Consensus 156 k~~svtl~ 163 (482)
T KOG2352|consen 156 KYISVTLV 163 (482)
T ss_pred EEEEEEee
Confidence 99888773
No 151
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=94.42 E-value=0.05 Score=49.03 Aligned_cols=44 Identities=23% Similarity=0.450 Sum_probs=34.8
Q ss_pred CCCCCCceeEEEeccccccCC----h---HHHHHHHHHhccCCcEEEEEec
Q 024162 48 LPVESFSIDTVLSISSSHELP----G---DQLLEEISRVLKPGGTILIYKK 91 (271)
Q Consensus 48 lp~~~~sfD~V~s~~~l~~~~----~---~~~L~ei~RvLKPGG~l~i~~~ 91 (271)
+.+....||+|++.....|++ + ..+++.|++.|.|||+|++...
T Consensus 160 l~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQ 210 (288)
T KOG2899|consen 160 LDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQ 210 (288)
T ss_pred hhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCC
Confidence 346677899999977655543 3 7899999999999999998653
No 152
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=94.41 E-value=0.17 Score=45.71 Aligned_cols=76 Identities=17% Similarity=0.295 Sum_probs=53.0
Q ss_pred CCeEEEeccCCCCCCC---CCceeEEEeccccccCChHHHHHHHHHhc-cCCcEEEEEecCCCCcccHHHHHHHHHHHHH
Q 024162 36 PQIITQASSLSQLPVE---SFSIDTVLSISSSHELPGDQLLEEISRVL-KPGGTILIYKKLTSDKGDVDKAISALEGKLL 111 (271)
Q Consensus 36 ~~v~~~~~d~e~lp~~---~~sfD~V~s~~~l~~~~~~~~L~ei~RvL-KPGG~l~i~~~~~~~~~e~~~~~~~l~~~l~ 111 (271)
.+|.+.+.|+..-.|+ ++.||+|+.=..- +..++..+.++| ||||++.+..+. +.+ .+.+...|.
T Consensus 92 ~~v~~~~~Dv~~~g~~~~~~~~~DavfLDlp~----Pw~~i~~~~~~L~~~gG~i~~fsP~------ieQ-v~~~~~~L~ 160 (247)
T PF08704_consen 92 DNVTVHHRDVCEEGFDEELESDFDAVFLDLPD----PWEAIPHAKRALKKPGGRICCFSPC------IEQ-VQKTVEALR 160 (247)
T ss_dssp TTEEEEES-GGCG--STT-TTSEEEEEEESSS----GGGGHHHHHHHE-EEEEEEEEEESS------HHH-HHHHHHHHH
T ss_pred CCceeEecceecccccccccCcccEEEEeCCC----HHHHHHHHHHHHhcCCceEEEECCC------HHH-HHHHHHHHH
Confidence 4688999999654443 3689999884321 256789999999 999999998765 222 124456678
Q ss_pred HcCCcchhhhh
Q 024162 112 LAGFLDAQRIQ 122 (271)
Q Consensus 112 laGF~~v~~~~ 122 (271)
..||.+++..+
T Consensus 161 ~~gf~~i~~~E 171 (247)
T PF08704_consen 161 EHGFTDIETVE 171 (247)
T ss_dssp HTTEEEEEEEE
T ss_pred HCCCeeeEEEE
Confidence 88999987765
No 153
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.32 E-value=0.17 Score=44.48 Aligned_cols=68 Identities=19% Similarity=0.235 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEec
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKK 91 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~ 91 (271)
++++.+.||++-. .....+|..+++|...-=-+...||.|+.......+| ..+..-|||||++++-..
T Consensus 103 ~~~L~~~A~~~L~---~lg~~nV~v~~gDG~~G~~~~aPyD~I~Vtaaa~~vP-----~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 103 IEELAEQARRNLE---TLGYENVTVRHGDGSKGWPEEAPYDRIIVTAAAPEVP-----EALLDQLKPGGRLVIPVG 170 (209)
T ss_pred cHHHHHHHHHHHH---HcCCCceEEEECCcccCCCCCCCcCEEEEeeccCCCC-----HHHHHhcccCCEEEEEEc
Confidence 5677777877631 1223458899999865422347899999987766665 567888999999998876
No 154
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=94.05 E-value=0.15 Score=45.37 Aligned_cols=56 Identities=16% Similarity=0.171 Sum_probs=43.2
Q ss_pred CeEEEeccCCCC---CCCCCceeEEEeccccccC---------ChHHHHHHHHHhccCCcEEEEEecC
Q 024162 37 QIITQASSLSQL---PVESFSIDTVLSISSSHEL---------PGDQLLEEISRVLKPGGTILIYKKL 92 (271)
Q Consensus 37 ~v~~~~~d~e~l---p~~~~sfD~V~s~~~l~~~---------~~~~~L~ei~RvLKPGG~l~i~~~~ 92 (271)
++..+..|+..+ -+++++.|-|+.++.--|. -.+.+++.+.|+|||||.|.+.+-.
T Consensus 99 Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~ 166 (227)
T COG0220 99 NLRLLCGDAVEVLDYLIPDGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDN 166 (227)
T ss_pred cEEEEcCCHHHHHHhcCCCCCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecC
Confidence 788888888754 2455699999998753332 1278999999999999999998743
No 155
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=93.89 E-value=0.79 Score=42.42 Aligned_cols=111 Identities=13% Similarity=0.117 Sum_probs=72.5
Q ss_pred EEEecCCcccHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCC-CC--CCceeEEEeccccccCCh----HHHHHHHHH
Q 024162 6 LALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLP-VE--SFSIDTVLSISSSHELPG----DQLLEEISR 78 (271)
Q Consensus 6 l~~td~~~~~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp-~~--~~sfD~V~s~~~l~~~~~----~~~L~ei~R 78 (271)
+++-|-+..+++.--+++++++- ...+.|.++|+-+.. +. .-..++++.+-.+..+++ ...|+-+++
T Consensus 164 i~LrDys~~Nv~~g~~li~~~gL------~~i~~f~~~dAfd~~~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~ 237 (311)
T PF12147_consen 164 ILLRDYSPINVEKGRALIAERGL------EDIARFEQGDAFDRDSLAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLAR 237 (311)
T ss_pred EEEEeCCHHHHHHHHHHHHHcCC------ccceEEEecCCCCHhHhhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHH
Confidence 35566666777777777777651 134588888875431 22 334678877666666776 457888999
Q ss_pred hccCCcEEEEEe--cCCCC---------c-c--c---HHHHHHHHHHHHHHcCCcchhhhh
Q 024162 79 VLKPGGTILIYK--KLTSD---------K-G--D---VDKAISALEGKLLLAGFLDAQRIQ 122 (271)
Q Consensus 79 vLKPGG~l~i~~--~~~~~---------~-~--e---~~~~~~~l~~~l~laGF~~v~~~~ 122 (271)
+|.|||.|+.+. |++.- + . . .++.-.++......|||..+...-
T Consensus 238 al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~aGF~K~~q~I 298 (311)
T PF12147_consen 238 ALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAAGFEKIDQRI 298 (311)
T ss_pred HhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHcCCchhhhee
Confidence 999999999986 55420 0 0 0 011234677788999999876653
No 156
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=93.85 E-value=0.15 Score=44.21 Aligned_cols=95 Identities=17% Similarity=0.163 Sum_probs=61.0
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEecc-----ccc-cCCh---HHHHHHHHHhccCCcEE
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSIS-----SSH-ELPG---DQLLEEISRVLKPGGTI 86 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~-----~l~-~~~~---~~~L~ei~RvLKPGG~l 86 (271)
++..+++|+..+.+. .....|.|.+.|+..-.+..+.||+|+--- +++ .-+. .-.+..+-++|+|||+|
T Consensus 100 s~~AV~LA~niAe~~--~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gif 177 (227)
T KOG1271|consen 100 SEKAVELAQNIAERD--GFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIF 177 (227)
T ss_pred CHHHHHHHHHHHHhc--CCCcceeEEEeeccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEE
Confidence 667777777765321 122349999999998788899999998521 222 1111 34577889999999999
Q ss_pred EEEecCCCCcccHHHHHHHHHHHHHHcCCcchhh
Q 024162 87 LIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQR 120 (271)
Q Consensus 87 ~i~~~~~~~~~e~~~~~~~l~~~l~laGF~~v~~ 120 (271)
+|..-+- - .++|...+...||.....
T Consensus 178 vItSCN~----T----~dELv~~f~~~~f~~~~t 203 (227)
T KOG1271|consen 178 VITSCNF----T----KDELVEEFENFNFEYLST 203 (227)
T ss_pred EEEecCc----c----HHHHHHHHhcCCeEEEEe
Confidence 9986441 1 124555566666655433
No 157
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=93.78 E-value=0.14 Score=45.24 Aligned_cols=54 Identities=24% Similarity=0.398 Sum_probs=42.0
Q ss_pred CCeEEEeccCCCCCCCC-CceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEE
Q 024162 36 PQIITQASSLSQLPVES-FSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIY 89 (271)
Q Consensus 36 ~~v~~~~~d~e~lp~~~-~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~ 89 (271)
.+|.+.++|+-+++-.. +.||+|+=...++-++. +...+.++++|+|||++++.
T Consensus 97 ~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi 154 (218)
T PF05724_consen 97 GRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLI 154 (218)
T ss_dssp SSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEE
T ss_pred CceEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 46889999998887544 47999998777777765 88999999999999994433
No 158
>PRK00536 speE spermidine synthase; Provisional
Probab=93.71 E-value=0.41 Score=43.59 Aligned_cols=92 Identities=12% Similarity=0.124 Sum_probs=55.2
Q ss_pred HHHHHHHHHHhCch-hhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecCCC
Q 024162 16 VSAVLNAIRDLGDE-AVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTS 94 (271)
Q Consensus 16 s~~mv~~ar~~~~~-~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~ 94 (271)
-++|++++|+.... ...-.++++..+.. +.+ ...++||+|+.=.. .++.+++.++|+|+|||.++.+..++-
T Consensus 103 D~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~--~~~~~fDVIIvDs~----~~~~fy~~~~~~L~~~Gi~v~Qs~sp~ 175 (262)
T PRK00536 103 DEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD--LDIKKYDLIICLQE----PDIHKIDGLKRMLKEDGVFISVAKHPL 175 (262)
T ss_pred CHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh--ccCCcCCEEEEcCC----CChHHHHHHHHhcCCCcEEEECCCCcc
Confidence 35678888884211 11235567766542 211 12468999997432 458899999999999999998865432
Q ss_pred CcccHHHHHHHHHHHHHHcCCcch
Q 024162 95 DKGDVDKAISALEGKLLLAGFLDA 118 (271)
Q Consensus 95 ~~~e~~~~~~~l~~~l~laGF~~v 118 (271)
. . ......+.+.+.. .|..+
T Consensus 176 ~--~-~~~~~~i~~~l~~-~F~~v 195 (262)
T PRK00536 176 L--E-HVSMQNALKNMGD-FFSIA 195 (262)
T ss_pred c--C-HHHHHHHHHHHHh-hCCce
Confidence 1 1 2223344454544 56543
No 159
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=93.70 E-value=0.23 Score=46.81 Aligned_cols=91 Identities=20% Similarity=0.181 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEec-cCCCCCCCCCceeEEEecc-----c-cccC--Ch--HHHHHHHHHhccCCc
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQAS-SLSQLPVESFSIDTVLSIS-----S-SHEL--PG--DQLLEEISRVLKPGG 84 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~-d~e~lp~~~~sfD~V~s~~-----~-l~~~--~~--~~~L~ei~RvLKPGG 84 (271)
.+.|++-++..-.. ..-....+... |+.++||++++||.|++=. + ..-. .. .++|..++++||+||
T Consensus 228 d~~mv~gak~Nl~~---y~i~~~~~~~~~Da~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG 304 (347)
T COG1041 228 DERMVRGAKINLEY---YGIEDYPVLKVLDATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGG 304 (347)
T ss_pred HHHHHhhhhhhhhh---hCcCceeEEEecccccCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCc
Confidence 56777777765311 11123333444 9999999999999999822 1 1111 22 789999999999999
Q ss_pred EEEEEecCCCCcccHHHHHHHHHHHHHHcCCcchhhh
Q 024162 85 TILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRI 121 (271)
Q Consensus 85 ~l~i~~~~~~~~~e~~~~~~~l~~~l~laGF~~v~~~ 121 (271)
++++..+. .-..++..+||..+...
T Consensus 305 ~~vf~~p~------------~~~~~~~~~~f~v~~~~ 329 (347)
T COG1041 305 RIVFAAPR------------DPRHELEELGFKVLGRF 329 (347)
T ss_pred EEEEecCC------------cchhhHhhcCceEEEEE
Confidence 99988763 11245777888876554
No 160
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=93.55 E-value=0.85 Score=40.63 Aligned_cols=113 Identities=19% Similarity=0.191 Sum_probs=74.1
Q ss_pred ccEEEEecCCcccHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCC---CCCCCceeEEEeccccccCCh-HHHHHHHHH
Q 024162 3 SAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQL---PVESFSIDTVLSISSSHELPG-DQLLEEISR 78 (271)
Q Consensus 3 ~~vl~~td~~~~~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~l---p~~~~sfD~V~s~~~l~~~~~-~~~L~ei~R 78 (271)
.++.++++-+.-+.+.+++++++|. +|.-+.+|+..- ..--+.+|+|++-.+ .-.. +-++.....
T Consensus 98 ~G~VYaVEfs~r~~rdL~~la~~R~---------NIiPIl~DAr~P~~Y~~lv~~VDvI~~DVa--Qp~Qa~I~~~Na~~ 166 (229)
T PF01269_consen 98 DGVVYAVEFSPRSMRDLLNLAKKRP---------NIIPILEDARHPEKYRMLVEMVDVIFQDVA--QPDQARIAALNARH 166 (229)
T ss_dssp TSEEEEEESSHHHHHHHHHHHHHST---------TEEEEES-TTSGGGGTTTS--EEEEEEE-S--STTHHHHHHHHHHH
T ss_pred CCcEEEEEecchhHHHHHHHhccCC---------ceeeeeccCCChHHhhcccccccEEEecCC--ChHHHHHHHHHHHh
Confidence 5688888888888999999999884 466666777522 122348999998433 1122 567777888
Q ss_pred hccCCcEEEEEecCC--CCcccHHHHHHHHHHHHHHcCCcchhhhhhccc
Q 024162 79 VLKPGGTILIYKKLT--SDKGDVDKAISALEGKLLLAGFLDAQRIQLKSV 126 (271)
Q Consensus 79 vLKPGG~l~i~~~~~--~~~~e~~~~~~~l~~~l~laGF~~v~~~~~~~~ 126 (271)
.||+||.+++.--.. +...+....+..-...|...||...+.....|+
T Consensus 167 fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e~i~LePy 216 (229)
T PF01269_consen 167 FLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLEQITLEPY 216 (229)
T ss_dssp HEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEEEEE-TTT
T ss_pred hccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChheEeccCCC
Confidence 999999999876432 111233445556667788889998877766664
No 161
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=93.46 E-value=0.64 Score=41.76 Aligned_cols=88 Identities=16% Similarity=0.189 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCC-CCC-CCCceeEEEeccccc------cCC----------------h--
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQ-LPV-ESFSIDTVLSISSSH------ELP----------------G-- 69 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~-lp~-~~~sfD~V~s~~~l~------~~~----------------~-- 69 (271)
++.+++.+++.... . .+.++++|+.+ ++- ..+.||+|+++-... .++ +
T Consensus 119 s~~al~~A~~N~~~----~--~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl 192 (251)
T TIGR03704 119 DPAAVRCARRNLAD----A--GGTVHEGDLYDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGL 192 (251)
T ss_pred CHHHHHHHHHHHHH----c--CCEEEEeechhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHH
Confidence 46677777765421 1 13677788754 221 135799999864321 000 0
Q ss_pred ---HHHHHHHHHhccCCcEEEEEecCCCCcccHHHHHHHHHHHHHHcCCcc
Q 024162 70 ---DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLD 117 (271)
Q Consensus 70 ---~~~L~ei~RvLKPGG~l~i~~~~~~~~~e~~~~~~~l~~~l~laGF~~ 117 (271)
..++..+.++|||||+|++..... .. ..+...+...||..
T Consensus 193 ~~~~~i~~~a~~~L~~gG~l~l~~~~~----~~----~~v~~~l~~~g~~~ 235 (251)
T TIGR03704 193 DVLRRVAAGAPDWLAPGGHLLVETSER----QA----PLAVEAFARAGLIA 235 (251)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEECcc----hH----HHHHHHHHHCCCCc
Confidence 366777779999999999876431 11 24556677788864
No 162
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=93.41 E-value=0.07 Score=45.19 Aligned_cols=71 Identities=20% Similarity=0.236 Sum_probs=50.4
Q ss_pred CCceeEEEeccccccCC------------hHHHHHHHHHhccCCcEEEEEecCC-CCc-ccHHHHHHHHHHHHHHcCCcc
Q 024162 52 SFSIDTVLSISSSHELP------------GDQLLEEISRVLKPGGTILIYKKLT-SDK-GDVDKAISALEGKLLLAGFLD 117 (271)
Q Consensus 52 ~~sfD~V~s~~~l~~~~------------~~~~L~ei~RvLKPGG~l~i~~~~~-~~~-~e~~~~~~~l~~~l~laGF~~ 117 (271)
.++||.+.+..++.|+. +...+.++.++|||||.|++..+.- +.. ....+++..++..+.+.||.-
T Consensus 61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~i~fNahRiYg~~rL~mm~~gfe~ 140 (177)
T PF03269_consen 61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDAIQFNAHRIYGPIRLAMMFYGFEW 140 (177)
T ss_pred hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcceEEecceeecHhHHHHHhCCcEE
Confidence 46799999877654432 2678999999999999999987642 211 223344556667789999987
Q ss_pred hhhhh
Q 024162 118 AQRIQ 122 (271)
Q Consensus 118 v~~~~ 122 (271)
+....
T Consensus 141 i~tfs 145 (177)
T PF03269_consen 141 IDTFS 145 (177)
T ss_pred Eeeec
Confidence 76543
No 163
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=93.06 E-value=0.19 Score=42.08 Aligned_cols=69 Identities=6% Similarity=0.011 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHh--ccCCcEEEEEec
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRV--LKPGGTILIYKK 91 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~Rv--LKPGG~l~i~~~ 91 (271)
++.|++.++++... ..++.++.+|+.++++++..||.|+++..++.. ...+..+.+. +.++|.|+++.-
T Consensus 44 ~~~~~~~~~~~~~~-----~~~v~ii~~D~~~~~~~~~~~d~vi~n~Py~~~--~~~i~~~l~~~~~~~~~~l~~q~e 114 (169)
T smart00650 44 DPRLAPRLREKFAA-----ADNLTVIHGDALKFDLPKLQPYKVVGNLPYNIS--TPILFKLLEEPPAFRDAVLMVQKE 114 (169)
T ss_pred CHHHHHHHHHHhcc-----CCCEEEEECchhcCCccccCCCEEEECCCcccH--HHHHHHHHhcCCCcceEEEEEEHH
Confidence 46788888876421 246889999999999888889999998765532 3444444433 457888877753
No 164
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=92.97 E-value=0.081 Score=51.98 Aligned_cols=47 Identities=19% Similarity=0.333 Sum_probs=37.4
Q ss_pred CCCCCCCCceeEEEeccccccCCh----HHHHHHHHHhccCCcEEEEEecC
Q 024162 46 SQLPVESFSIDTVLSISSSHELPG----DQLLEEISRVLKPGGTILIYKKL 92 (271)
Q Consensus 46 e~lp~~~~sfD~V~s~~~l~~~~~----~~~L~ei~RvLKPGG~l~i~~~~ 92 (271)
|.++.=+.+||+|.+...+....+ ..+|-||-|+|+|||.++|.+..
T Consensus 419 E~fsTYPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~ 469 (506)
T PF03141_consen 419 EAFSTYPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTV 469 (506)
T ss_pred hccCCCCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEeccH
Confidence 456666789999998765544332 88999999999999999999854
No 165
>PLN02823 spermine synthase
Probab=92.92 E-value=0.26 Score=46.45 Aligned_cols=75 Identities=16% Similarity=0.184 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhCch-hhhcCCCCeEEEeccCCC-CCCCCCceeEEEeccc-------cccCChHHHHH-HHHHhccCCcE
Q 024162 16 VSAVLNAIRDLGDE-AVEQCDPQIITQASSLSQ-LPVESFSIDTVLSISS-------SHELPGDQLLE-EISRVLKPGGT 85 (271)
Q Consensus 16 s~~mv~~ar~~~~~-~~~~~~~~v~~~~~d~e~-lp~~~~sfD~V~s~~~-------l~~~~~~~~L~-ei~RvLKPGG~ 85 (271)
.+++++++|+.... .....++++..+.+|+.. +.-..+.||+|+.-.. ...+...++++ .+.+.|+|||.
T Consensus 136 D~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gv 215 (336)
T PLN02823 136 DQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGI 215 (336)
T ss_pred CHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcE
Confidence 67789999987421 011235778888888754 3444678999998421 11233478898 89999999999
Q ss_pred EEEEe
Q 024162 86 ILIYK 90 (271)
Q Consensus 86 l~i~~ 90 (271)
++++-
T Consensus 216 lv~q~ 220 (336)
T PLN02823 216 FVTQA 220 (336)
T ss_pred EEEec
Confidence 88764
No 166
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=92.77 E-value=0.97 Score=44.87 Aligned_cols=94 Identities=17% Similarity=0.180 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccc--------------cCC---------h---
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSH--------------ELP---------G--- 69 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~--------------~~~---------~--- 69 (271)
++.+++.+++..... ....++.++++++.. +++.++||+|+++-... +-+ .
T Consensus 171 s~~al~~A~~N~~~~--~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~ 247 (506)
T PRK01544 171 SLDAIEVAKSNAIKY--EVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQA 247 (506)
T ss_pred CHHHHHHHHHHHHHc--CCccceeeeecchhh-hCcCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHH
Confidence 567777777663211 112357888888643 24456899999953110 100 0
Q ss_pred -HHHHHHHHHhccCCcEEEEEecCCCCcccHHHHHHHHHHHHHHcCCcchhh
Q 024162 70 -DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQR 120 (271)
Q Consensus 70 -~~~L~ei~RvLKPGG~l~i~~~~~~~~~e~~~~~~~l~~~l~laGF~~v~~ 120 (271)
..++.++.+.|+|||.|++.... ... ..+...+...||..+..
T Consensus 248 ~~~il~~a~~~L~~gG~l~lEig~-----~q~---~~v~~~~~~~g~~~~~~ 291 (506)
T PRK01544 248 YFIIAENAKQFLKPNGKIILEIGF-----KQE---EAVTQIFLDHGYNIESV 291 (506)
T ss_pred HHHHHHHHHHhccCCCEEEEEECC-----chH---HHHHHHHHhcCCCceEE
Confidence 34567888999999999876432 111 14455566789876544
No 167
>PRK13699 putative methylase; Provisional
Probab=92.46 E-value=0.26 Score=43.71 Aligned_cols=72 Identities=17% Similarity=0.173 Sum_probs=43.1
Q ss_pred EEeccCCCC--CCCCCceeEEEeccccc----c-----C-----Ch--HHHHHHHHHhccCCcEEEEEecCCCCcccHHH
Q 024162 40 TQASSLSQL--PVESFSIDTVLSISSSH----E-----L-----PG--DQLLEEISRVLKPGGTILIYKKLTSDKGDVDK 101 (271)
Q Consensus 40 ~~~~d~e~l--p~~~~sfD~V~s~~~l~----~-----~-----~~--~~~L~ei~RvLKPGG~l~i~~~~~~~~~e~~~ 101 (271)
...+|.-++ .++++|+|+|+.--... . + .. ..++.|++|+|||||.+++..... ...
T Consensus 4 l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~----~~~- 78 (227)
T PRK13699 4 FILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWN----RVD- 78 (227)
T ss_pred EEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEeccc----cHH-
Confidence 344555433 57788999998742110 0 0 01 578899999999999998643221 111
Q ss_pred HHHHHHHHHHHcCCcchh
Q 024162 102 AISALEGKLLLAGFLDAQ 119 (271)
Q Consensus 102 ~~~~l~~~l~laGF~~v~ 119 (271)
.+...+..+||...+
T Consensus 79 ---~~~~al~~~GF~l~~ 93 (227)
T PRK13699 79 ---RFMAAWKNAGFSVVG 93 (227)
T ss_pred ---HHHHHHHHCCCEEee
Confidence 233456678987543
No 168
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=92.09 E-value=0.63 Score=43.10 Aligned_cols=73 Identities=21% Similarity=0.178 Sum_probs=45.7
Q ss_pred CCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecCCCCcccHHHHHHHHHHHHHHcCCcchhhhhhccccCcc
Q 024162 51 ESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQLKSVVPAE 130 (271)
Q Consensus 51 ~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~~~e~~~~~~~l~~~l~laGF~~v~~~~~~~~~~~~ 130 (271)
....||+|+++-...-+ ...+..+.+.|+|||+|+++-.... .. ..+...+.. ||..++.....
T Consensus 222 ~~~~~dlvvANI~~~vL--~~l~~~~~~~l~~~G~lIlSGIl~~---~~----~~v~~a~~~-g~~~~~~~~~~------ 285 (295)
T PF06325_consen 222 VEGKFDLVVANILADVL--LELAPDIASLLKPGGYLILSGILEE---QE----DEVIEAYKQ-GFELVEEREEG------ 285 (295)
T ss_dssp CCS-EEEEEEES-HHHH--HHHHHHCHHHEEEEEEEEEEEEEGG---GH----HHHHHHHHT-TEEEEEEEEET------
T ss_pred ccccCCEEEECCCHHHH--HHHHHHHHHhhCCCCEEEEccccHH---HH----HHHHHHHHC-CCEEEEEEEEC------
Confidence 35899999996432111 5678889999999999999875421 11 244455554 99876554432
Q ss_pred eeEEEEEeeC
Q 024162 131 VVSFGVKGKK 140 (271)
Q Consensus 131 ~~~~~i~a~K 140 (271)
.++.+..+|
T Consensus 286 -~W~~l~~~K 294 (295)
T PF06325_consen 286 -EWVALVFKK 294 (295)
T ss_dssp -TEEEEEEEE
T ss_pred -CEEEEEEEe
Confidence 355555544
No 169
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=91.65 E-value=1.2 Score=40.00 Aligned_cols=77 Identities=16% Similarity=0.143 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhCchhh-hcCCCCeEEEeccCCCC-CCCCC-ceeEEEeccc-----cccCChHHHHHHHHHhccCCcEEE
Q 024162 16 VSAVLNAIRDLGDEAV-EQCDPQIITQASSLSQL-PVESF-SIDTVLSISS-----SHELPGDQLLEEISRVLKPGGTIL 87 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~-~~~~~~v~~~~~d~e~l-p~~~~-sfD~V~s~~~-----l~~~~~~~~L~ei~RvLKPGG~l~ 87 (271)
.+.+++++++...... ...++++..+.+|.... .-... .||+|+.-.. ...+-..++++.+.+.|+|||.++
T Consensus 109 D~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v 188 (246)
T PF01564_consen 109 DPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLV 188 (246)
T ss_dssp -HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEE
T ss_pred ChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEE
Confidence 5678899988642211 13457888888887533 22233 8999997221 111334899999999999999999
Q ss_pred EEecC
Q 024162 88 IYKKL 92 (271)
Q Consensus 88 i~~~~ 92 (271)
+....
T Consensus 189 ~~~~~ 193 (246)
T PF01564_consen 189 LQAGS 193 (246)
T ss_dssp EEEEE
T ss_pred EEccC
Confidence 98743
No 170
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=91.45 E-value=0.79 Score=45.52 Aligned_cols=57 Identities=12% Similarity=0.231 Sum_probs=42.9
Q ss_pred CCeEEEeccCCCC--CCCCCceeEEEeccccccCC---------hHHHHHHHHHhccCCcEEEEEecC
Q 024162 36 PQIITQASSLSQL--PVESFSIDTVLSISSSHELP---------GDQLLEEISRVLKPGGTILIYKKL 92 (271)
Q Consensus 36 ~~v~~~~~d~e~l--p~~~~sfD~V~s~~~l~~~~---------~~~~L~ei~RvLKPGG~l~i~~~~ 92 (271)
.++.++..+++.+ -|+++++|.|+.++.--|.. .+.++..++++|||||.|.+.+-.
T Consensus 397 ~N~~~~~~~~~~~~~~~~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~ 464 (506)
T PRK01544 397 TNFLLFPNNLDLILNDLPNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDI 464 (506)
T ss_pred CeEEEEcCCHHHHHHhcCcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCC
Confidence 4566666766533 27889999999988533321 388999999999999999988743
No 171
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=91.02 E-value=0.84 Score=44.98 Aligned_cols=82 Identities=20% Similarity=0.219 Sum_probs=52.8
Q ss_pred cEEEEecCCcccHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCC-CCCCceeEEEe----ccc--c--------ccCC
Q 024162 4 AVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLP-VESFSIDTVLS----ISS--S--------HELP 68 (271)
Q Consensus 4 ~vl~~td~~~~~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp-~~~~sfD~V~s----~~~--l--------~~~~ 68 (271)
+.|+..|....=...+.+.+++.+ + .++.....|...++ ...+.||.|+. +.. + .|..
T Consensus 139 g~lvA~D~~~~R~~~L~~nl~r~G---~----~nv~v~~~D~~~~~~~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~ 211 (470)
T PRK11933 139 GAIVANEYSASRVKVLHANISRCG---V----SNVALTHFDGRVFGAALPETFDAILLDAPCSGEGTVRKDPDALKNWSP 211 (470)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcC---C----CeEEEEeCchhhhhhhchhhcCeEEEcCCCCCCcccccCHHHhhhCCH
Confidence 567777776666666666666543 2 34566667766553 33467999995 211 1 1111
Q ss_pred -------h--HHHHHHHHHhccCCcEEEEEecC
Q 024162 69 -------G--DQLLEEISRVLKPGGTILIYKKL 92 (271)
Q Consensus 69 -------~--~~~L~ei~RvLKPGG~l~i~~~~ 92 (271)
. .++|...++.|||||+|+.++-+
T Consensus 212 ~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 212 ESNLEIAATQRELIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence 1 56788899999999999888765
No 172
>PRK11524 putative methyltransferase; Provisional
Probab=90.96 E-value=0.32 Score=44.42 Aligned_cols=52 Identities=21% Similarity=0.222 Sum_probs=36.5
Q ss_pred EEEeccCCCC--CCCCCceeEEEeccccc-------c---CC-----h--HHHHHHHHHhccCCcEEEEEe
Q 024162 39 ITQASSLSQL--PVESFSIDTVLSISSSH-------E---LP-----G--DQLLEEISRVLKPGGTILIYK 90 (271)
Q Consensus 39 ~~~~~d~e~l--p~~~~sfD~V~s~~~l~-------~---~~-----~--~~~L~ei~RvLKPGG~l~i~~ 90 (271)
.++.+|..++ .+++++||+|++.-.+. . +. . ..++.+++|+|||||.|++..
T Consensus 10 ~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 10 TIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred EEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 4566776653 46788999999942211 0 00 1 468899999999999999864
No 173
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=90.68 E-value=0.86 Score=42.96 Aligned_cols=52 Identities=19% Similarity=0.296 Sum_probs=41.3
Q ss_pred eEEEeccCCCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEecC
Q 024162 38 IITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKKL 92 (271)
Q Consensus 38 v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~~~ 92 (271)
|..+-+++-+- .|. -|+|+.-+.+|+|.| -++|+.++..|+|||.+++.+..
T Consensus 223 V~~v~gdmfq~-~P~--~daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V 277 (342)
T KOG3178|consen 223 VEHVAGDMFQD-TPK--GDAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENV 277 (342)
T ss_pred cceeccccccc-CCC--cCeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEecc
Confidence 56666766533 332 349999999999987 78999999999999999999873
No 174
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=90.58 E-value=0.88 Score=44.56 Aligned_cols=53 Identities=15% Similarity=0.276 Sum_probs=37.7
Q ss_pred CCCCeEEEeccCCCCCCCCCceeEEEeccccccCC---hHHHHHHHHHhccCCcEEE
Q 024162 34 CDPQIITQASSLSQLPVESFSIDTVLSISSSHELP---GDQLLEEISRVLKPGGTIL 87 (271)
Q Consensus 34 ~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~---~~~~L~ei~RvLKPGG~l~ 87 (271)
.+.+|+.++++++++..+. .+|+|+|-..-.... .++.|....|.|||||.++
T Consensus 239 w~~~V~vi~~d~r~v~lpe-kvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 239 WGDKVTVIHGDMREVELPE-KVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp TTTTEEEEES-TTTSCHSS--EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred CCCeEEEEeCcccCCCCCC-ceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 4467999999999998765 999999943222221 2678888999999999886
No 175
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=90.52 E-value=0.52 Score=45.18 Aligned_cols=58 Identities=14% Similarity=0.229 Sum_probs=49.7
Q ss_pred CCeEEEeccCCCCC--CCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEecCC
Q 024162 36 PQIITQASSLSQLP--VESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKKLT 93 (271)
Q Consensus 36 ~~v~~~~~d~e~lp--~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~~~~ 93 (271)
.+|.++.+++++.- .++++||.++.+-..-|+.+ .+.+++|.|.++|||++++.....
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~ 337 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAV 337 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCC
Confidence 57888889887652 57899999999888888876 788999999999999999998764
No 176
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=90.49 E-value=0.3 Score=43.43 Aligned_cols=56 Identities=16% Similarity=0.280 Sum_probs=40.5
Q ss_pred CeEEEeccCCCC--CCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecC
Q 024162 37 QIITQASSLSQL--PVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKL 92 (271)
Q Consensus 37 ~v~~~~~d~e~l--p~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~ 92 (271)
+|....+.-++. .+++.+||.|+.-.-..+..+ ..+.+.+.|+|||+|.|.+....
T Consensus 150 nViil~g~WeDvl~~L~d~~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~SyfNg~ 208 (271)
T KOG1709|consen 150 NVIILEGRWEDVLNTLPDKHFDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSYFNGL 208 (271)
T ss_pred ceEEEecchHhhhccccccCcceeEeechhhHHHHHHHHHHHHhhhcCCCceEEEecCc
Confidence 455666666543 277999999997443233334 78889999999999999887654
No 177
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=90.25 E-value=1.3 Score=41.12 Aligned_cols=70 Identities=24% Similarity=0.300 Sum_probs=45.8
Q ss_pred HHHHHHHHHhCchhhhcCCCCe-EEEeccCCCCCCCCCceeEEEeccccccCCh------HHHHHHHHHhccCCcEEEEE
Q 024162 17 SAVLNAIRDLGDEAVEQCDPQI-ITQASSLSQLPVESFSIDTVLSISSSHELPG------DQLLEEISRVLKPGGTILIY 89 (271)
Q Consensus 17 ~~mv~~ar~~~~~~~~~~~~~v-~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~------~~~L~ei~RvLKPGG~l~i~ 89 (271)
...++.+|+.... ++... .+..+++ ..+..+ +||+|+++-.+|.=.. ++++.+..+.|++||.|.|.
T Consensus 192 ~~Av~~ar~Nl~~----N~~~~~~v~~s~~-~~~v~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iV 265 (300)
T COG2813 192 ARAVESARKNLAA----NGVENTEVWASNL-YEPVEG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIV 265 (300)
T ss_pred HHHHHHHHHhHHH----cCCCccEEEEecc-cccccc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEE
Confidence 4456777765321 11221 3334443 334445 9999999887774322 58999999999999999988
Q ss_pred ecC
Q 024162 90 KKL 92 (271)
Q Consensus 90 ~~~ 92 (271)
-..
T Consensus 266 an~ 268 (300)
T COG2813 266 ANR 268 (300)
T ss_pred EcC
Confidence 763
No 178
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=90.21 E-value=1.3 Score=39.29 Aligned_cols=71 Identities=15% Similarity=0.119 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCC-C-----CCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEE
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQL-P-----VESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILI 88 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~l-p-----~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i 88 (271)
.+.+++.|++..... ....+|.++.+++.+. + .+..+||+|+.-..- +. ...+.++.+.|+|||.+++
T Consensus 102 d~~~~~~A~~n~~~~--gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~VfiDa~k---~~y~~~~~~~~~ll~~GG~ii~ 176 (234)
T PLN02781 102 DKEAYEVGLEFIKKA--GVDHKINFIQSDALSALDQLLNNDPKPEFDFAFVDADK---PNYVHFHEQLLKLVKVGGIIAF 176 (234)
T ss_pred CHHHHHHHHHHHHHc--CCCCcEEEEEccHHHHHHHHHhCCCCCCCCEEEECCCH---HHHHHHHHHHHHhcCCCeEEEE
Confidence 456777777763211 1224688899988653 2 124689999884321 22 6788999999999999887
Q ss_pred Eec
Q 024162 89 YKK 91 (271)
Q Consensus 89 ~~~ 91 (271)
-+.
T Consensus 177 dn~ 179 (234)
T PLN02781 177 DNT 179 (234)
T ss_pred EcC
Confidence 653
No 179
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=90.10 E-value=0.81 Score=42.08 Aligned_cols=76 Identities=18% Similarity=0.164 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhCchhh-hcCCCCeEEEeccCCCC-CCCCCceeEEEeccccc-----cCChHHHHHHHHHhccCCcEEEE
Q 024162 16 VSAVLNAIRDLGDEAV-EQCDPQIITQASSLSQL-PVESFSIDTVLSISSSH-----ELPGDQLLEEISRVLKPGGTILI 88 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~-~~~~~~v~~~~~d~e~l-p~~~~sfD~V~s~~~l~-----~~~~~~~L~ei~RvLKPGG~l~i 88 (271)
-+.+++++|+....-. ...++++..+.+|.-+. .-....||+|+.-..-. .+....+++.++|.|+++|.++.
T Consensus 109 D~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~ 188 (282)
T COG0421 109 DPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVA 188 (282)
T ss_pred CHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEE
Confidence 5778999999742211 12257788888887544 22233899999844322 22248999999999999999999
Q ss_pred Eec
Q 024162 89 YKK 91 (271)
Q Consensus 89 ~~~ 91 (271)
+..
T Consensus 189 q~~ 191 (282)
T COG0421 189 QAG 191 (282)
T ss_pred ecC
Confidence 943
No 180
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=90.05 E-value=3.7 Score=35.55 Aligned_cols=87 Identities=15% Similarity=0.066 Sum_probs=55.6
Q ss_pred HHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecCCCCc
Q 024162 17 SAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDK 96 (271)
Q Consensus 17 ~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~~ 96 (271)
+++++.+++.... -.-.++..+.+++-..--...+||.|+..-. -.-+.+|+.+...|||||++++.-...
T Consensus 68 ~~a~~~~~~N~~~---fg~~n~~vv~g~Ap~~L~~~~~~daiFIGGg---~~i~~ile~~~~~l~~ggrlV~naitl--- 138 (187)
T COG2242 68 EEALELIERNAAR---FGVDNLEVVEGDAPEALPDLPSPDAIFIGGG---GNIEEILEAAWERLKPGGRLVANAITL--- 138 (187)
T ss_pred HHHHHHHHHHHHH---hCCCcEEEEeccchHhhcCCCCCCEEEECCC---CCHHHHHHHHHHHcCcCCeEEEEeecH---
Confidence 3455555554311 1236788888888644223338999998654 223789999999999999999876542
Q ss_pred ccHHHHHHHHHHHHHHcCCc
Q 024162 97 GDVDKAISALEGKLLLAGFL 116 (271)
Q Consensus 97 ~e~~~~~~~l~~~l~laGF~ 116 (271)
+....+...+...||.
T Consensus 139 ----E~~~~a~~~~~~~g~~ 154 (187)
T COG2242 139 ----ETLAKALEALEQLGGR 154 (187)
T ss_pred ----HHHHHHHHHHHHcCCc
Confidence 1122444567777774
No 181
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=89.93 E-value=0.6 Score=39.77 Aligned_cols=72 Identities=22% Similarity=0.280 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEecccccc-CC------h--HHHHHHHHHhccCCcEE
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHE-LP------G--DQLLEEISRVLKPGGTI 86 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~-~~------~--~~~L~ei~RvLKPGG~l 86 (271)
...+++.+++..... .....|.+.+.|+.++++.++++|+|++...+-. +. . ..+++++.|+|++ ..+
T Consensus 70 ~~~~v~~a~~N~~~a--g~~~~i~~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v 146 (179)
T PF01170_consen 70 DPKAVRGARENLKAA--GVEDYIDFIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAV 146 (179)
T ss_dssp SHHHHHHHHHHHHHT--T-CGGEEEEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEE
T ss_pred CHHHHHHHHHHHHhc--ccCCceEEEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEE
Confidence 456666676653211 1223588999999999988899999999654321 11 1 5678899999999 444
Q ss_pred EEEe
Q 024162 87 LIYK 90 (271)
Q Consensus 87 ~i~~ 90 (271)
++..
T Consensus 147 ~l~~ 150 (179)
T PF01170_consen 147 FLTT 150 (179)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4444
No 182
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=88.72 E-value=2.1 Score=36.80 Aligned_cols=53 Identities=32% Similarity=0.432 Sum_probs=40.7
Q ss_pred CCeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecC
Q 024162 36 PQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKL 92 (271)
Q Consensus 36 ~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~~ 92 (271)
.++..+.+++++ +....+||+|++-.+. +-..++.-..+.|++||++++.-..
T Consensus 98 ~nv~v~~~R~E~-~~~~~~fd~v~aRAv~---~l~~l~~~~~~~l~~~G~~l~~KG~ 150 (184)
T PF02527_consen 98 SNVEVINGRAEE-PEYRESFDVVTARAVA---PLDKLLELARPLLKPGGRLLAYKGP 150 (184)
T ss_dssp SSEEEEES-HHH-TTTTT-EEEEEEESSS---SHHHHHHHHGGGEEEEEEEEEEESS
T ss_pred CCEEEEEeeecc-cccCCCccEEEeehhc---CHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 458899999998 6668899999996532 2267788889999999999988754
No 183
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=88.30 E-value=0.93 Score=40.22 Aligned_cols=73 Identities=23% Similarity=0.176 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEec-cCC-CCC-CCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEec
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQAS-SLS-QLP-VESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKK 91 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~-d~e-~lp-~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~ 91 (271)
-+++.+.|++.-..+ ....+|..+.+ +.- .+. +..++||+|+.=.. =.+ +.++..+.+.|+|||.+++-+.
T Consensus 93 ~~e~~~~A~~n~~~a--g~~~~i~~~~~gdal~~l~~~~~~~fDliFIDad---K~~yp~~le~~~~lLr~GGliv~DNv 167 (219)
T COG4122 93 DEERAEIARENLAEA--GVDDRIELLLGGDALDVLSRLLDGSFDLVFIDAD---KADYPEYLERALPLLRPGGLIVADNV 167 (219)
T ss_pred CHHHHHHHHHHHHHc--CCcceEEEEecCcHHHHHHhccCCCccEEEEeCC---hhhCHHHHHHHHHHhCCCcEEEEeec
Confidence 567788888763221 12234666663 442 222 45789999998431 122 7899999999999999998775
Q ss_pred CC
Q 024162 92 LT 93 (271)
Q Consensus 92 ~~ 93 (271)
..
T Consensus 168 l~ 169 (219)
T COG4122 168 LF 169 (219)
T ss_pred cc
Confidence 43
No 184
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=88.15 E-value=1.8 Score=38.36 Aligned_cols=74 Identities=18% Similarity=0.186 Sum_probs=52.6
Q ss_pred cccHHHHHHHHHHhCchhh-------hcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcE
Q 024162 13 ILPVSAVLNAIRDLGDEAV-------EQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGT 85 (271)
Q Consensus 13 ~~~s~~mv~~ar~~~~~~~-------~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~ 85 (271)
+...+++++.+++....-. .-....+.++.+|....--+.+.||.|+.-... ++..+++...|+|||+
T Consensus 114 IEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~a~YDaIhvGAaa-----~~~pq~l~dqL~~gGr 188 (237)
T KOG1661|consen 114 IEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQAPYDAIHVGAAA-----SELPQELLDQLKPGGR 188 (237)
T ss_pred hhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCccCCcceEEEccCc-----cccHHHHHHhhccCCe
Confidence 3446777777777521111 123346778899998887788899999986433 3456889999999999
Q ss_pred EEEEec
Q 024162 86 ILIYKK 91 (271)
Q Consensus 86 l~i~~~ 91 (271)
+++-..
T Consensus 189 llip~~ 194 (237)
T KOG1661|consen 189 LLIPVG 194 (237)
T ss_pred EEEeec
Confidence 998654
No 185
>PHA03412 putative methyltransferase; Provisional
Probab=87.71 E-value=2.1 Score=38.52 Aligned_cols=61 Identities=10% Similarity=0.063 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccC--------C-----hHHHHHHHHHhccC
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHEL--------P-----GDQLLEEISRVLKP 82 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~--------~-----~~~~L~ei~RvLKP 82 (271)
.+.+++++++.. ..+.++.+|+...++ +.+||+|+++-.++-. + ...++....|+++|
T Consensus 85 D~~Al~~Ar~n~--------~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~ 155 (241)
T PHA03412 85 NHTYYKLGKRIV--------PEATWINADALTTEF-DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQ 155 (241)
T ss_pred CHHHHHHHHhhc--------cCCEEEEcchhcccc-cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCC
Confidence 455677777543 346788899877665 5689999996543211 1 15578888886677
Q ss_pred CcE
Q 024162 83 GGT 85 (271)
Q Consensus 83 GG~ 85 (271)
|+.
T Consensus 156 G~~ 158 (241)
T PHA03412 156 GTF 158 (241)
T ss_pred CEE
Confidence 664
No 186
>PLN02672 methionine S-methyltransferase
Probab=86.65 E-value=4.1 Score=44.17 Aligned_cols=78 Identities=17% Similarity=0.103 Sum_probs=51.5
Q ss_pred CeEEEeccCCCCCCCC--CceeEEEecccc---------------c------c-----C--------Ch-----HHHHHH
Q 024162 37 QIITQASSLSQLPVES--FSIDTVLSISSS---------------H------E-----L--------PG-----DQLLEE 75 (271)
Q Consensus 37 ~v~~~~~d~e~lp~~~--~sfD~V~s~~~l---------------~------~-----~--------~~-----~~~L~e 75 (271)
+|.++++|+.+.. .. ..||+|+++-.. + | . .+ ..++.+
T Consensus 185 rV~f~~sDl~~~~-~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~ 263 (1082)
T PLN02672 185 RVEFYESDLLGYC-RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEE 263 (1082)
T ss_pred cEEEEECchhhhc-cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHH
Confidence 6899999986543 22 269999996320 0 0 0 11 456778
Q ss_pred HHHhccCCcEEEEEecCCCCcccHHHHHHHHH-HHHHHcCCcchhhhhh
Q 024162 76 ISRVLKPGGTILIYKKLTSDKGDVDKAISALE-GKLLLAGFLDAQRIQL 123 (271)
Q Consensus 76 i~RvLKPGG~l~i~~~~~~~~~e~~~~~~~l~-~~l~laGF~~v~~~~~ 123 (271)
..++|+|||.+++..... ..+ .+. +.+...||..+..++.
T Consensus 264 a~~~L~pgG~l~lEiG~~-----q~~---~v~~~l~~~~gf~~~~~~~~ 304 (1082)
T PLN02672 264 GISVIKPMGIMIFNMGGR-----PGQ---AVCERLFERRGFRITKLWQT 304 (1082)
T ss_pred HHHhccCCCEEEEEECcc-----HHH---HHHHHHHHHCCCCeeEEeee
Confidence 888999999998776541 222 444 4567789998777765
No 187
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=85.36 E-value=7.4 Score=37.47 Aligned_cols=76 Identities=13% Similarity=0.108 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCC--C--CCCceeEEEeccccccC---------Ch-HHHHHHHHHhcc
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLP--V--ESFSIDTVLSISSSHEL---------PG-DQLLEEISRVLK 81 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp--~--~~~sfD~V~s~~~l~~~---------~~-~~~L~ei~RvLK 81 (271)
++.+++.+++..... .....++.++++|+.+.- + ...+||+|++.-....- .+ ..++....++|+
T Consensus 252 s~~al~~a~~N~~~N-gl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk 330 (396)
T PRK15128 252 SQEALDIARQNVELN-KLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLN 330 (396)
T ss_pred CHHHHHHHHHHHHHc-CCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcC
Confidence 567777777653211 001136889999986541 2 24589999985432110 11 344556789999
Q ss_pred CCcEEEEEecC
Q 024162 82 PGGTILIYKKL 92 (271)
Q Consensus 82 PGG~l~i~~~~ 92 (271)
|||.|++..-+
T Consensus 331 ~gG~lv~~scs 341 (396)
T PRK15128 331 PGGILLTFSCS 341 (396)
T ss_pred CCeEEEEEeCC
Confidence 99999987644
No 188
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=85.26 E-value=3 Score=40.51 Aligned_cols=71 Identities=14% Similarity=0.187 Sum_probs=46.9
Q ss_pred cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCC----CCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEe
Q 024162 15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQ----LPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYK 90 (271)
Q Consensus 15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~----lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~ 90 (271)
.++.|++.+++..... ...++.++++|+.+ +++.+++||+|++.-...- ....+..+.+ |+|++.++++.
T Consensus 327 ~s~~al~~A~~n~~~~---~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dPPr~g--~~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 327 GVEAMVERARENARRN---GLDNVTFYHANLEEDFTDQPWALGGFDKVLLDPPRAG--AAEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred CCHHHHHHHHHHHHHc---CCCceEEEEeChHHhhhhhhhhcCCCCEEEECcCCcC--hHHHHHHHHh-cCCCeEEEEEe
Confidence 3678888888764211 11358899999864 3455678999998543222 2455665555 69999999986
Q ss_pred c
Q 024162 91 K 91 (271)
Q Consensus 91 ~ 91 (271)
.
T Consensus 401 n 401 (443)
T PRK13168 401 N 401 (443)
T ss_pred C
Confidence 4
No 189
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=84.83 E-value=2.9 Score=40.22 Aligned_cols=73 Identities=18% Similarity=0.196 Sum_probs=48.0
Q ss_pred CCCCceeEEEeccccccCCh-HH--------------------------------------HHHHHHHhccCCcEEEEEe
Q 024162 50 VESFSIDTVLSISSSHELPG-DQ--------------------------------------LLEEISRVLKPGGTILIYK 90 (271)
Q Consensus 50 ~~~~sfD~V~s~~~l~~~~~-~~--------------------------------------~L~ei~RvLKPGG~l~i~~ 90 (271)
||.+|.+++++++++||+.. +. +|+-=++-|.|||+++++.
T Consensus 158 fP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~~ 237 (386)
T PLN02668 158 FPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLVC 237 (386)
T ss_pred cCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEE
Confidence 78999999999999999863 11 1222235688999999998
Q ss_pred cCCCCc----cc-HHHH----HHHHHHHHHHcCCcchhhhh
Q 024162 91 KLTSDK----GD-VDKA----ISALEGKLLLAGFLDAQRIQ 122 (271)
Q Consensus 91 ~~~~~~----~e-~~~~----~~~l~~~l~laGF~~v~~~~ 122 (271)
.+.... .+ .... .+.....+..-|.++.+.+.
T Consensus 238 ~Gr~~~~~~~~~~~~~~~~~~l~~al~dlv~eGlI~eek~d 278 (386)
T PLN02668 238 LGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLVTSEKRD 278 (386)
T ss_pred ecCCCCCcccCCchhHHHHHHHHHHHHHHHHcCCCCHHHHh
Confidence 765311 11 1122 23344567788988876654
No 190
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.53 E-value=1.7 Score=37.14 Aligned_cols=104 Identities=14% Similarity=0.157 Sum_probs=60.6
Q ss_pred EEEEecCCcccHHHHHHHHHHhCchhhhcCCC-CeEEEeccCCCCCCCCCceeEEEeccccccCCh--HHHHHHHHHhcc
Q 024162 5 VLALSEDKILPVSAVLNAIRDLGDEAVEQCDP-QIITQASSLSQLPVESFSIDTVLSISSSHELPG--DQLLEEISRVLK 81 (271)
Q Consensus 5 vl~~td~~~~~s~~mv~~ar~~~~~~~~~~~~-~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~--~~~L~ei~RvLK 81 (271)
-..+||+-...++.+..+.-...... .... .+.|. -.-.........||+|++.--+ ++.. .++..-|.+.|+
T Consensus 56 ~v~ltdgne~svrnv~ki~~~n~~s~--~tsc~vlrw~-~~~aqsq~eq~tFDiIlaADCl-FfdE~h~sLvdtIk~lL~ 131 (201)
T KOG3201|consen 56 SVWLTDGNEESVRNVEKIRNSNMASS--LTSCCVLRWL-IWGAQSQQEQHTFDIILAADCL-FFDEHHESLVDTIKSLLR 131 (201)
T ss_pred eEEEecCCHHHHHHHHHHHhcccccc--cceehhhHHH-HhhhHHHHhhCcccEEEeccch-hHHHHHHHHHHHHHHHhC
Confidence 34568887777777655544331000 0001 12221 1112233446699999985432 1222 788899999999
Q ss_pred CCcEEEEEecCCCCcccHHHHHHHHHHHHHHcCCcch
Q 024162 82 PGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDA 118 (271)
Q Consensus 82 PGG~l~i~~~~~~~~~e~~~~~~~l~~~l~laGF~~v 118 (271)
|.|+-++..+..+ ++.+.+..+....||...
T Consensus 132 p~g~Al~fsPRRg------~sL~kF~de~~~~gf~v~ 162 (201)
T KOG3201|consen 132 PSGRALLFSPRRG------QSLQKFLDEVGTVGFTVC 162 (201)
T ss_pred cccceeEecCccc------chHHHHHHHHHhceeEEE
Confidence 9999887766532 233466677788888753
No 191
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=84.53 E-value=3.6 Score=39.01 Aligned_cols=82 Identities=17% Similarity=0.245 Sum_probs=53.6
Q ss_pred EEEEecCCcccHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCC---CCCCceeEEEec--c----cc------cc---
Q 024162 5 VLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLP---VESFSIDTVLSI--S----SS------HE--- 66 (271)
Q Consensus 5 vl~~td~~~~~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp---~~~~sfD~V~s~--~----~l------~~--- 66 (271)
++++.|.+..-...|.+.++..+ + .++.....+...++ ...+.||.|+.= + ++ -|
T Consensus 184 iV~A~D~~~~Rl~~l~~nl~RlG---~----~nv~~~~~d~~~~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~ 256 (355)
T COG0144 184 IVVAVDVSPKRLKRLRENLKRLG---V----RNVIVVNKDARRLAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRT 256 (355)
T ss_pred eEEEEcCCHHHHHHHHHHHHHcC---C----CceEEEecccccccccccccCcCcEEEECCCCCCCcccccCccccccCC
Confidence 34788888888888888888776 2 33445555554443 223359999971 1 11 01
Q ss_pred ------CCh--HHHHHHHHHhccCCcEEEEEecCC
Q 024162 67 ------LPG--DQLLEEISRVLKPGGTILIYKKLT 93 (271)
Q Consensus 67 ------~~~--~~~L~ei~RvLKPGG~l~i~~~~~ 93 (271)
+.. .++|....++|||||+|+.++=+-
T Consensus 257 ~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~ 291 (355)
T COG0144 257 PEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSL 291 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCC
Confidence 111 467888999999999999998653
No 192
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=84.50 E-value=3.3 Score=34.93 Aligned_cols=85 Identities=21% Similarity=0.284 Sum_probs=43.3
Q ss_pred ccEEEEecCCcccHHHHHHHHHHhCchhhhcCCCCeEEEeccCCC-C---CCCCCceeEEEeccccccCCh-HHHHHHHH
Q 024162 3 SAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQ-L---PVESFSIDTVLSISSSHELPG-DQLLEEIS 77 (271)
Q Consensus 3 ~~vl~~td~~~~~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~-l---p~~~~sfD~V~s~~~l~~~~~-~~~L~ei~ 77 (271)
..-+++||... ..+.+..-++.... ....++....-+-.+ + .+....||+|+..-.++.-.. +.++.-+.
T Consensus 69 ~~~Vv~TD~~~-~l~~l~~Ni~~N~~----~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~~~~~~L~~tl~ 143 (173)
T PF10294_consen 69 AARVVLTDYNE-VLELLRRNIELNGS----LLDGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLYDEELFEPLVRTLK 143 (173)
T ss_dssp -SEEEEEE-S--HHHHHHHHHHTT------------EEEE--TTS-HHHHHHS-SSBSEEEEES--S-GGGHHHHHHHHH
T ss_pred CceEEEeccch-hhHHHHHHHHhccc----cccccccCcEEEecCcccccccccccCCEEEEecccchHHHHHHHHHHHH
Confidence 34567788765 44433333332210 112344444444322 1 134568999999877665444 88999999
Q ss_pred HhccCCcEEEEEecC
Q 024162 78 RVLKPGGTILIYKKL 92 (271)
Q Consensus 78 RvLKPGG~l~i~~~~ 92 (271)
++|+|+|.+++....
T Consensus 144 ~ll~~~~~vl~~~~~ 158 (173)
T PF10294_consen 144 RLLKPNGKVLLAYKR 158 (173)
T ss_dssp HHBTT-TTEEEEEE-
T ss_pred HHhCCCCEEEEEeCE
Confidence 999999997776644
No 193
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=84.12 E-value=3.3 Score=42.82 Aligned_cols=76 Identities=13% Similarity=0.087 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCC-CCCCCceeEEEecccc---c----c----CCh-HHHHHHHHHhccC
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQL-PVESFSIDTVLSISSS---H----E----LPG-DQLLEEISRVLKP 82 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~l-p~~~~sfD~V~s~~~l---~----~----~~~-~~~L~ei~RvLKP 82 (271)
++.+++.+++...... ....++.++++|+.+. .-...+||+|++.-.. . . ..+ ..++..+.++|+|
T Consensus 570 s~~al~~a~~N~~~ng-~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~ 648 (702)
T PRK11783 570 SNTYLEWAERNFALNG-LSGRQHRLIQADCLAWLKEAREQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRP 648 (702)
T ss_pred CHHHHHHHHHHHHHhC-CCccceEEEEccHHHHHHHcCCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCC
Confidence 6677777777532110 0113688999997542 1114689999984321 0 1 112 5678889999999
Q ss_pred CcEEEEEecC
Q 024162 83 GGTILIYKKL 92 (271)
Q Consensus 83 GG~l~i~~~~ 92 (271)
||.|++....
T Consensus 649 gG~l~~~~~~ 658 (702)
T PRK11783 649 GGTLYFSNNK 658 (702)
T ss_pred CCEEEEEeCC
Confidence 9999887654
No 194
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=83.86 E-value=3.3 Score=38.06 Aligned_cols=56 Identities=13% Similarity=0.316 Sum_probs=36.3
Q ss_pred CCCeEEEeccCCCCCCCCCceeEEEeccccc-cC-ChHHHHHHHHHhccCCcEEEEEe
Q 024162 35 DPQIITQASSLSQLPVESFSIDTVLSISSSH-EL-PGDQLLEEISRVLKPGGTILIYK 90 (271)
Q Consensus 35 ~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~-~~-~~~~~L~ei~RvLKPGG~l~i~~ 90 (271)
...+.|+.+++...+.+-..||+|+...... -- +-.++|.++.+.++||..+++..
T Consensus 173 ~~~m~f~~~d~~~~~~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 173 SKRMSFITADVLDVTYDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp -SSEEEEES-GGGG-GG----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred cCCeEEEecchhccccccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEec
Confidence 4678999999988877777999998644221 11 23899999999999999999884
No 195
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=83.81 E-value=1.8 Score=44.22 Aligned_cols=70 Identities=19% Similarity=0.250 Sum_probs=49.0
Q ss_pred CeEEEeccCCC-CCCCCCceeEEEe-ccccccCCh---HHHHHHHHHhccCCcEEEEEecCCCCcccHHHHHHHHHHHHH
Q 024162 37 QIITQASSLSQ-LPVESFSIDTVLS-ISSSHELPG---DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLL 111 (271)
Q Consensus 37 ~v~~~~~d~e~-lp~~~~sfD~V~s-~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~~~~~~~~e~~~~~~~l~~~l~ 111 (271)
.+....+|+.. ++--...||+|+. -++...-++ .+++++|+|.++|||+|.-.+.. ..+++.|.
T Consensus 148 ~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t~a-----------~~vr~~l~ 216 (662)
T PRK01747 148 TLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFTSA-----------GFVRRGLQ 216 (662)
T ss_pred EEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEeehH-----------HHHHHHHH
Confidence 44456677753 3322356999997 344333343 89999999999999999966533 26778899
Q ss_pred HcCCcc
Q 024162 112 LAGFLD 117 (271)
Q Consensus 112 laGF~~ 117 (271)
.+||..
T Consensus 217 ~~GF~v 222 (662)
T PRK01747 217 EAGFTV 222 (662)
T ss_pred HcCCee
Confidence 999974
No 196
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=83.60 E-value=2 Score=40.23 Aligned_cols=82 Identities=17% Similarity=0.193 Sum_probs=51.1
Q ss_pred EEEeccCCCC---CCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCC-------CC--cccHHHHHHH
Q 024162 39 ITQASSLSQL---PVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLT-------SD--KGDVDKAISA 105 (271)
Q Consensus 39 ~~~~~d~e~l---p~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~~-------~~--~~e~~~~~~~ 105 (271)
+...||..+. +-..++||+|+..+-+---++ -+.|..|..+|||||.++=.-+.. +. ...+.-+.++
T Consensus 241 sicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g~~~~~siEls~ed 320 (369)
T KOG2798|consen 241 SICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWINLGPLLYHFEDTHGVENEMSIELSLED 320 (369)
T ss_pred cccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEeccceeeeccCCCCCcccccccccHHH
Confidence 3344555433 223357999998754444445 788999999999999987543211 10 1122234567
Q ss_pred HHHHHHHcCCcchhh
Q 024162 106 LEGKLLLAGFLDAQR 120 (271)
Q Consensus 106 l~~~l~laGF~~v~~ 120 (271)
+.+....-||..+..
T Consensus 321 l~~v~~~~GF~~~ke 335 (369)
T KOG2798|consen 321 LKRVASHRGFEVEKE 335 (369)
T ss_pred HHHHHHhcCcEEEEe
Confidence 777788899987544
No 197
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=83.59 E-value=3.3 Score=35.52 Aligned_cols=71 Identities=17% Similarity=0.156 Sum_probs=53.8
Q ss_pred cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCC-----CCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEE
Q 024162 15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLP-----VESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTI 86 (271)
Q Consensus 15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp-----~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l 86 (271)
-+..++.+..++. +.+.++.+|+..+. +...-||.|+|...+..++. -..|+++...|.+||.|
T Consensus 81 ~~~dF~~~L~~~~--------p~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~l 152 (194)
T COG3963 81 YSPDFVCHLNQLY--------PGVNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPL 152 (194)
T ss_pred eCHHHHHHHHHhC--------CCccccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeE
Confidence 3667777777775 22345667776654 66788999999887777764 67899999999999999
Q ss_pred EEEecCC
Q 024162 87 LIYKKLT 93 (271)
Q Consensus 87 ~i~~~~~ 93 (271)
+-.+.++
T Consensus 153 vqftYgp 159 (194)
T COG3963 153 VQFTYGP 159 (194)
T ss_pred EEEEecC
Confidence 9888763
No 198
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=82.55 E-value=1.8 Score=40.83 Aligned_cols=69 Identities=19% Similarity=0.199 Sum_probs=47.2
Q ss_pred HHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCCh----HHHHHHHHHhccCCcEEE
Q 024162 17 SAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG----DQLLEEISRVLKPGGTIL 87 (271)
Q Consensus 17 ~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~----~~~L~ei~RvLKPGG~l~ 87 (271)
+.|.+.+++..... .....|+.+++.++++.+|...+|+|++-+.-+++.- ..+|-.=-+-|+|||.++
T Consensus 92 S~ia~~a~~iv~~N--~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 92 SSIADFARKIVKDN--GLEDVITVIKGKVEDIELPVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred hHHHHHHHHHHHhc--CccceEEEeecceEEEecCccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 44556666642111 1124588999999998888899999999765444432 555555668999999886
No 199
>PLN02476 O-methyltransferase
Probab=79.33 E-value=7.4 Score=35.76 Aligned_cols=71 Identities=15% Similarity=0.178 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCC-CC-C----CCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEE
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQ-LP-V----ESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILI 88 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~-lp-~----~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i 88 (271)
.+++.++|++..... ....+|.++.+++.+ |+ + ..++||+|+.=..- .. ...+..+.+.|+|||.+++
T Consensus 152 d~e~~~~Ar~n~~~a--Gl~~~I~li~GdA~e~L~~l~~~~~~~~FD~VFIDa~K---~~Y~~y~e~~l~lL~~GGvIV~ 226 (278)
T PLN02476 152 DSNSLEVAKRYYELA--GVSHKVNVKHGLAAESLKSMIQNGEGSSYDFAFVDADK---RMYQDYFELLLQLVRVGGVIVM 226 (278)
T ss_pred CHHHHHHHHHHHHHc--CCCCcEEEEEcCHHHHHHHHHhcccCCCCCEEEECCCH---HHHHHHHHHHHHhcCCCcEEEE
Confidence 456677777653211 122468888898754 22 2 24689999984321 22 6788899999999999888
Q ss_pred Eec
Q 024162 89 YKK 91 (271)
Q Consensus 89 ~~~ 91 (271)
-+.
T Consensus 227 DNv 229 (278)
T PLN02476 227 DNV 229 (278)
T ss_pred ecC
Confidence 654
No 200
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=78.84 E-value=9.6 Score=34.69 Aligned_cols=96 Identities=17% Similarity=0.163 Sum_probs=54.6
Q ss_pred cHHHHHHHHHHhCchhhhcCCCCeEEEeccC-CCCCCCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEe
Q 024162 15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSL-SQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYK 90 (271)
Q Consensus 15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~-e~lp~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~ 90 (271)
.|..|+++++....... ......+..... +..++. ..|+|++.+++.++++ ..+++.+.+.+.+ .|++.+
T Consensus 66 ~s~~~~~l~~~l~~~~~--~~~~~~~~~~~~~~~~~~~--~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVE 139 (274)
T PF09243_consen 66 RSPEMLELAKRLLRAGP--NNRNAEWRRVLYRDFLPFP--PDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVE 139 (274)
T ss_pred CCHHHHHHHHHHHhccc--ccccchhhhhhhcccccCC--CCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEc
Confidence 57888888887643221 111111111111 123333 2399999999988876 4555555555554 999999
Q ss_pred cCCCCcccHHHHHHHHHHHHHHcCCcchh
Q 024162 91 KLTSDKGDVDKAISALEGKLLLAGFLDAQ 119 (271)
Q Consensus 91 ~~~~~~~e~~~~~~~l~~~l~laGF~~v~ 119 (271)
++.. .. .+....++..|...|+..+.
T Consensus 140 pGt~--~G-f~~i~~aR~~l~~~~~~v~A 165 (274)
T PF09243_consen 140 PGTP--AG-FRRIAEARDQLLEKGAHVVA 165 (274)
T ss_pred CCCh--HH-HHHHHHHHHHHhhCCCceEC
Confidence 8742 11 12234556667777776653
No 201
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=76.71 E-value=54 Score=29.10 Aligned_cols=112 Identities=18% Similarity=0.171 Sum_probs=71.9
Q ss_pred ccEEEEecCCcccHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCC---CCCCCceeEEEeccccccCCh--HHHHHHHH
Q 024162 3 SAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQL---PVESFSIDTVLSISSSHELPG--DQLLEEIS 77 (271)
Q Consensus 3 ~~vl~~td~~~~~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~l---p~~~~sfD~V~s~~~l~~~~~--~~~L~ei~ 77 (271)
.++++.++-+.-+.+.++.+++++. +|.-+.+|+..- .+--+..|+|+.--+ .++ +-+...+.
T Consensus 100 ~G~iYaVEfs~R~~reLl~~a~~R~---------Ni~PIL~DA~~P~~Y~~~Ve~VDviy~DVA---Qp~Qa~I~~~Na~ 167 (231)
T COG1889 100 EGRIYAVEFSPRPMRELLDVAEKRP---------NIIPILEDARKPEKYRHLVEKVDVIYQDVA---QPNQAEILADNAE 167 (231)
T ss_pred CCcEEEEEecchhHHHHHHHHHhCC---------CceeeecccCCcHHhhhhcccccEEEEecC---CchHHHHHHHHHH
Confidence 3567777777778888888888874 344455665321 122345888887321 133 55777888
Q ss_pred HhccCCcEEEEEecCC--CCcccHHHHHHHHHHHHHHcCCcchhhhhhccc
Q 024162 78 RVLKPGGTILIYKKLT--SDKGDVDKAISALEGKLLLAGFLDAQRIQLKSV 126 (271)
Q Consensus 78 RvLKPGG~l~i~~~~~--~~~~e~~~~~~~l~~~l~laGF~~v~~~~~~~~ 126 (271)
..||+||.+++.--.. +...+....+......|...||...+.....|+
T Consensus 168 ~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~f~i~e~~~LePy 218 (231)
T COG1889 168 FFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGGFEILEVVDLEPY 218 (231)
T ss_pred HhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhcCceeeEEeccCCc
Confidence 9999999777765332 122344455555567788899988777766554
No 202
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=76.55 E-value=23 Score=29.26 Aligned_cols=56 Identities=21% Similarity=0.226 Sum_probs=35.0
Q ss_pred CeEEEeccCCCCC--CCCCceeEEEecccc-----ccCC---h--HHHHHHHHHhccCCcEEEEEecC
Q 024162 37 QIITQASSLSQLP--VESFSIDTVLSISSS-----HELP---G--DQLLEEISRVLKPGGTILIYKKL 92 (271)
Q Consensus 37 ~v~~~~~d~e~lp--~~~~sfD~V~s~~~l-----~~~~---~--~~~L~ei~RvLKPGG~l~i~~~~ 92 (271)
++.++..+=+++. .+.+.+|+|+.+... +.+- + -.++..+.+.|+|||.+.+.-..
T Consensus 27 ~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~lL~~gG~i~iv~Y~ 94 (140)
T PF06962_consen 27 RVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALELLKPGGIITIVVYP 94 (140)
T ss_dssp GEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHHHEEEEEEEEEEE--
T ss_pred cEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHHhhccCCEEEEEEeC
Confidence 5777777666664 233589998876521 1111 1 56899999999999999888754
No 203
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=76.33 E-value=7.3 Score=37.60 Aligned_cols=77 Identities=14% Similarity=0.105 Sum_probs=50.5
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCC-C---CCCCceeEEEec---cc---cccC---Ch-HHHHHHHHHhcc
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQL-P---VESFSIDTVLSI---SS---SHEL---PG-DQLLEEISRVLK 81 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~l-p---~~~~sfD~V~s~---~~---l~~~---~~-~~~L~ei~RvLK 81 (271)
|...++.+++...-. .....++.|+++|+-+. . -....||+|+.= ++ -..+ .+ ..++....++|+
T Consensus 249 S~~al~~a~~N~~LN-g~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~ 327 (393)
T COG1092 249 SKRALEWARENAELN-GLDGDRHRFIVGDVFKWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLA 327 (393)
T ss_pred cHHHHHHHHHHHHhc-CCCccceeeehhhHHHHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcC
Confidence 677788888763110 11224578999988543 2 223489999982 11 1112 22 678889999999
Q ss_pred CCcEEEEEecCC
Q 024162 82 PGGTILIYKKLT 93 (271)
Q Consensus 82 PGG~l~i~~~~~ 93 (271)
|||.+++++...
T Consensus 328 pgG~l~~~s~~~ 339 (393)
T COG1092 328 PGGTLVTSSCSR 339 (393)
T ss_pred CCCEEEEEecCC
Confidence 999999998764
No 204
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=75.33 E-value=9.8 Score=33.16 Aligned_cols=75 Identities=17% Similarity=0.101 Sum_probs=46.4
Q ss_pred cEEEEecCCcccHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCC
Q 024162 4 AVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPG 83 (271)
Q Consensus 4 ~vl~~td~~~~~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPG 83 (271)
...+.+|.-+...+-|.+-++... + ...|....+|...+.. ...||.|++...... ..+|..+.+.+|+|
T Consensus 126 ~~V~A~d~Np~a~~~L~~Ni~lNk---v---~~~i~~~~~D~~~~~~-~~~~drvim~lp~~~---~~fl~~~~~~~~~~ 195 (200)
T PF02475_consen 126 KRVYAVDLNPDAVEYLKENIRLNK---V---ENRIEVINGDAREFLP-EGKFDRVIMNLPESS---LEFLDAALSLLKEG 195 (200)
T ss_dssp SEEEEEES-HHHHHHHHHHHHHTT-------TTTEEEEES-GGG----TT-EEEEEE--TSSG---GGGHHHHHHHEEEE
T ss_pred cEEEEecCCHHHHHHHHHHHHHcC---C---CCeEEEEcCCHHHhcC-ccccCEEEECChHHH---HHHHHHHHHHhcCC
Confidence 345666666666666666666543 1 2457888999987765 889999998653211 35788899999999
Q ss_pred cEEEE
Q 024162 84 GTILI 88 (271)
Q Consensus 84 G~l~i 88 (271)
|.+.+
T Consensus 196 g~ihy 200 (200)
T PF02475_consen 196 GIIHY 200 (200)
T ss_dssp EEEEE
T ss_pred cEEEC
Confidence 98863
No 205
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=74.98 E-value=11 Score=36.21 Aligned_cols=71 Identities=15% Similarity=0.145 Sum_probs=45.5
Q ss_pred cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCC----CCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEe
Q 024162 15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQL----PVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYK 90 (271)
Q Consensus 15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~l----p~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~ 90 (271)
.++.|++.+++..... ...++.++++++.+. ++.+.+||+|+..-.-.-+ ...++..+.+ |+|++.++++.
T Consensus 322 ~~~~av~~a~~n~~~~---~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dPPr~G~-~~~~l~~l~~-l~~~~ivyvsc 396 (431)
T TIGR00479 322 VVPESVEKAQQNAELN---GIANVEFLAGTLETVLPKQPWAGQIPDVLLLDPPRKGC-AAEVLRTIIE-LKPERIVYVSC 396 (431)
T ss_pred cCHHHHHHHHHHHHHh---CCCceEEEeCCHHHHHHHHHhcCCCCCEEEECcCCCCC-CHHHHHHHHh-cCCCEEEEEcC
Confidence 3577888888763211 114688999998652 3445689999974431111 2667776654 89998888764
No 206
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=74.93 E-value=9.2 Score=35.94 Aligned_cols=80 Identities=16% Similarity=0.184 Sum_probs=45.1
Q ss_pred ccCCCCCCCCCceeEEEeccccccCCh------H-------------------H---------------HHHHHHHhccC
Q 024162 43 SSLSQLPVESFSIDTVLSISSSHELPG------D-------------------Q---------------LLEEISRVLKP 82 (271)
Q Consensus 43 ~d~e~lp~~~~sfD~V~s~~~l~~~~~------~-------------------~---------------~L~ei~RvLKP 82 (271)
++.-.==||++|.|+++|++++||+.. . . +|+-=++-|+|
T Consensus 96 gSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~ 175 (334)
T PF03492_consen 96 GSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELVP 175 (334)
T ss_dssp S-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEEE
T ss_pred chhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheecc
Confidence 444433489999999999999998752 1 1 12222356889
Q ss_pred CcEEEEEecCCCCc-------ccHHHHHHHHHHHHHHcCCcchhhhh
Q 024162 83 GGTILIYKKLTSDK-------GDVDKAISALEGKLLLAGFLDAQRIQ 122 (271)
Q Consensus 83 GG~l~i~~~~~~~~-------~e~~~~~~~l~~~l~laGF~~v~~~~ 122 (271)
||++++...+.... ..+-...+.....+..-|.++.+.+.
T Consensus 176 GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~d 222 (334)
T PF03492_consen 176 GGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVD 222 (334)
T ss_dssp EEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCC
T ss_pred CcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhh
Confidence 99999998765321 11223344555677888988766553
No 207
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=74.29 E-value=7.9 Score=33.82 Aligned_cols=72 Identities=21% Similarity=0.203 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCC-C-----CCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEE
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQL-P-----VESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILI 88 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~l-p-----~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i 88 (271)
.+.+.+.|++..... ....+|.++.+++.+. + .+.+.||+|+.=..- .. ...+..+.+.|+|||.+++
T Consensus 79 ~~~~~~~A~~~~~~a--g~~~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa~K---~~y~~y~~~~~~ll~~ggvii~ 153 (205)
T PF01596_consen 79 DPERAEIARENFRKA--GLDDRIEVIEGDALEVLPELANDGEEGQFDFVFIDADK---RNYLEYFEKALPLLRPGGVIIA 153 (205)
T ss_dssp SHHHHHHHHHHHHHT--TGGGGEEEEES-HHHHHHHHHHTTTTTSEEEEEEESTG---GGHHHHHHHHHHHEEEEEEEEE
T ss_pred cHHHHHHHHHHHHhc--CCCCcEEEEEeccHhhHHHHHhccCCCceeEEEEcccc---cchhhHHHHHhhhccCCeEEEE
Confidence 455666676653211 1124788998887542 2 124589999984321 12 5778889999999999998
Q ss_pred EecC
Q 024162 89 YKKL 92 (271)
Q Consensus 89 ~~~~ 92 (271)
-+..
T Consensus 154 DN~l 157 (205)
T PF01596_consen 154 DNVL 157 (205)
T ss_dssp ETTT
T ss_pred cccc
Confidence 7643
No 208
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=74.18 E-value=16 Score=32.29 Aligned_cols=76 Identities=24% Similarity=0.220 Sum_probs=48.2
Q ss_pred CCeEEEeccCCCCCCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEecCCCCcccHHHHHHHHHHHHHHcC
Q 024162 36 PQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAG 114 (271)
Q Consensus 36 ~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~~~~~~~~e~~~~~~~l~~~l~laG 114 (271)
.+++++++++|++.-....||+|++... .+ ..++.=....||+||.+++.-... ....+.+.+......|
T Consensus 117 ~nv~i~~~RaE~~~~~~~~~D~vtsRAv----a~L~~l~e~~~pllk~~g~~~~~k~~~-----~~~e~~e~~~a~~~~~ 187 (215)
T COG0357 117 ENVEIVHGRAEEFGQEKKQYDVVTSRAV----ASLNVLLELCLPLLKVGGGFLAYKGLA-----GKDELPEAEKAILPLG 187 (215)
T ss_pred CCeEEehhhHhhcccccccCcEEEeehc----cchHHHHHHHHHhcccCCcchhhhHHh-----hhhhHHHHHHHHHhhc
Confidence 5589999999988643222999999542 22 345555678899999987554432 1122234556666666
Q ss_pred Ccchhh
Q 024162 115 FLDAQR 120 (271)
Q Consensus 115 F~~v~~ 120 (271)
|.....
T Consensus 188 ~~~~~~ 193 (215)
T COG0357 188 GQVEKV 193 (215)
T ss_pred CcEEEE
Confidence 665443
No 209
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=73.40 E-value=1.3 Score=30.99 Aligned_cols=21 Identities=48% Similarity=1.233 Sum_probs=16.6
Q ss_pred CCCCCCCC------CCCccccCCCCCC
Q 024162 229 QSACGSCG------LGDAFRCGTCPYK 249 (271)
Q Consensus 229 ~s~cg~c~------lgdafrc~~cpy~ 249 (271)
.--||-|. -||+|||--|-|+
T Consensus 20 iYiCgdC~~en~lk~~D~irCReCG~R 46 (62)
T KOG3507|consen 20 IYICGDCGQENTLKRGDVIRCRECGYR 46 (62)
T ss_pred EEEeccccccccccCCCcEehhhcchH
Confidence 34577775 4999999999886
No 210
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=73.09 E-value=19 Score=31.21 Aligned_cols=56 Identities=7% Similarity=-0.009 Sum_probs=37.0
Q ss_pred CeEEEeccCCC-CCCCCCceeEEEeccccccCChHHHHHHHHH--hccCCcEEEEEecC
Q 024162 37 QIITQASSLSQ-LPVESFSIDTVLSISSSHELPGDQLLEEISR--VLKPGGTILIYKKL 92 (271)
Q Consensus 37 ~v~~~~~d~e~-lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~R--vLKPGG~l~i~~~~ 92 (271)
++.++.+|+.+ ++....+||+|++.-.+..-....++..+.+ +|+|+|.+++....
T Consensus 103 ~v~~~~~D~~~~l~~~~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 103 NARVVNTNALSFLAQPGTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred cEEEEEchHHHHHhhcCCCceEEEECCCCCCChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 57888888764 3333457999999765432222556666655 38999988887654
No 211
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=72.92 E-value=7.1 Score=36.09 Aligned_cols=64 Identities=17% Similarity=0.212 Sum_probs=40.8
Q ss_pred CCceeEEEecccc-ccCChHHHHHHHHHhccCCcEEEEEecCC--C-CcccHHHHHHHHHHHHHHcCCcchhh
Q 024162 52 SFSIDTVLSISSS-HELPGDQLLEEISRVLKPGGTILIYKKLT--S-DKGDVDKAISALEGKLLLAGFLDAQR 120 (271)
Q Consensus 52 ~~sfD~V~s~~~l-~~~~~~~~L~ei~RvLKPGG~l~i~~~~~--~-~~~e~~~~~~~l~~~l~laGF~~v~~ 120 (271)
.+-||+|+..+.. |.+.+ ++.++++|+|.|++.+..- . ...........+...+..+||..+..
T Consensus 220 ~~~Fd~ifvs~s~vh~L~p-----~l~~~~a~~A~LvvEtaKfmvdLrKEq~~~F~~kv~eLA~~aG~~p~~~ 287 (289)
T PF14740_consen 220 QNFFDLIFVSCSMVHFLKP-----ELFQALAPDAVLVVETAKFMVDLRKEQLQEFVKKVKELAKAAGFKPVTN 287 (289)
T ss_pred cCCCCEEEEhhhhHhhcch-----HHHHHhCCCCEEEEEcchhheeCCHHHHHHHHHHHHHHHHHCCCccccc
Confidence 4679999875543 43432 3888999999999887421 1 11122233446677788999987543
No 212
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=72.23 E-value=5.7 Score=35.80 Aligned_cols=71 Identities=10% Similarity=-0.001 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCC-C-C-----CCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEE
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQL-P-V-----ESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTIL 87 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~l-p-~-----~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~ 87 (271)
.+.+.+.||+..... ....+|.++.+++.+. + + ..++||+|+.=..- .. ...+..+.+.|+|||.++
T Consensus 113 ~~~~~~~Ar~~~~~a--g~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDadK---~~Y~~y~~~~l~ll~~GGviv 187 (247)
T PLN02589 113 NRENYELGLPVIQKA--GVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDADK---DNYINYHKRLIDLVKVGGVIG 187 (247)
T ss_pred CHHHHHHHHHHHHHC--CCCCceEEEeccHHHHHHHHHhccccCCcccEEEecCCH---HHhHHHHHHHHHhcCCCeEEE
Confidence 356677777763211 1235788988987543 2 1 13689999984321 11 567788889999999988
Q ss_pred EEec
Q 024162 88 IYKK 91 (271)
Q Consensus 88 i~~~ 91 (271)
+-+.
T Consensus 188 ~DNv 191 (247)
T PLN02589 188 YDNT 191 (247)
T ss_pred EcCC
Confidence 7543
No 213
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=71.57 E-value=3.4 Score=36.73 Aligned_cols=64 Identities=17% Similarity=0.254 Sum_probs=43.2
Q ss_pred cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCC-hHHHHHHHHHhccC-CcEEEEEe
Q 024162 15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKP-GGTILIYK 90 (271)
Q Consensus 15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~-~~~~L~ei~RvLKP-GG~l~i~~ 90 (271)
.|+.|.+..+.+. -+|.. -++- --.+-.||+|.+.+.+.-.. +-.+|..|+.+|.| .|++++.-
T Consensus 142 lS~tMr~rL~kk~--------ynVl~---~~ew-~~t~~k~dli~clNlLDRc~~p~kLL~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 142 LSWTMRDRLKKKN--------YNVLT---EIEW-LQTDVKLDLILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred hhHHHHHHHhhcC--------Cceee---ehhh-hhcCceeehHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEEEE
Confidence 3777887777764 12211 1111 11233699999988775444 48899999999999 99998864
No 214
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=71.56 E-value=7.8 Score=36.89 Aligned_cols=72 Identities=15% Similarity=0.220 Sum_probs=48.9
Q ss_pred cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCChH---HHHHHHHHhccCCcEEEEE
Q 024162 15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGD---QLLEEISRVLKPGGTILIY 89 (271)
Q Consensus 15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~---~~L~ei~RvLKPGG~l~i~ 89 (271)
-.++|.+.||+..... -...+|..+.|.+|++.+|+ ..|+|++--.-..+-++ +..-...|.|||.|..+=.
T Consensus 207 EAS~MAqyA~~Lv~~N--~~~~rItVI~GKiEdieLPE-k~DviISEPMG~mL~NERMLEsYl~Ark~l~P~GkMfPT 281 (517)
T KOG1500|consen 207 EASEMAQYARKLVASN--NLADRITVIPGKIEDIELPE-KVDVIISEPMGYMLVNERMLESYLHARKWLKPNGKMFPT 281 (517)
T ss_pred ehhHHHHHHHHHHhcC--CccceEEEccCccccccCch-hccEEEeccchhhhhhHHHHHHHHHHHhhcCCCCcccCc
Confidence 4678899999873211 12246888999999998864 79999995443333332 2333456999999998743
No 215
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=70.91 E-value=25 Score=33.31 Aligned_cols=100 Identities=15% Similarity=0.150 Sum_probs=67.5
Q ss_pred EEEecCCcccHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcE
Q 024162 6 LALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGT 85 (271)
Q Consensus 6 l~~td~~~~~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~ 85 (271)
++++|.-+....-+.+-++... + ...|..+++|...++.....||.|++.+.. ....++....+.|++||.
T Consensus 214 V~A~diNP~A~~~L~eNi~LN~---v---~~~v~~i~gD~rev~~~~~~aDrIim~~p~---~a~~fl~~A~~~~k~~g~ 284 (341)
T COG2520 214 VYAIDINPDAVEYLKENIRLNK---V---EGRVEPILGDAREVAPELGVADRIIMGLPK---SAHEFLPLALELLKDGGI 284 (341)
T ss_pred EEEEecCHHHHHHHHHHHHhcC---c---cceeeEEeccHHHhhhccccCCEEEeCCCC---cchhhHHHHHHHhhcCcE
Confidence 5677777777777777777654 1 134788899999888776899999997532 125678888999999999
Q ss_pred EEEEecCCCCcccHHHHHHHHHHHHHHcCC
Q 024162 86 ILIYKKLTSDKGDVDKAISALEGKLLLAGF 115 (271)
Q Consensus 86 l~i~~~~~~~~~e~~~~~~~l~~~l~laGF 115 (271)
+.+++..+..... ......+.......|+
T Consensus 285 iHyy~~~~e~~~~-~~~~~~i~~~~~~~~~ 313 (341)
T COG2520 285 IHYYEFVPEDDIE-ERPEKRIKSAARKGGY 313 (341)
T ss_pred EEEEeccchhhcc-cchHHHHHHHHhhccC
Confidence 9999987542211 0122344444555555
No 216
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=70.39 E-value=46 Score=30.42 Aligned_cols=42 Identities=29% Similarity=0.470 Sum_probs=28.9
Q ss_pred HHHHHHHHHhccCCcEEEEEecCCCCcccHHHHHHHHHHHHHHcC-Ccchh
Q 024162 70 DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAG-FLDAQ 119 (271)
Q Consensus 70 ~~~L~ei~RvLKPGG~l~i~~~~~~~~~e~~~~~~~l~~~l~laG-F~~v~ 119 (271)
..++.++.+.|+|||.+++.....+ . ..+...+...| |..+.
T Consensus 218 ~~i~~~a~~~l~~~g~l~le~g~~q-----~---~~v~~~~~~~~~~~~v~ 260 (280)
T COG2890 218 RRILGEAPDILKPGGVLILEIGLTQ-----G---EAVKALFEDTGFFEIVE 260 (280)
T ss_pred HHHHHhhHHHcCCCcEEEEEECCCc-----H---HHHHHHHHhcCCceEEE
Confidence 4577888899999999988765321 1 25666788888 44433
No 217
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=69.76 E-value=24 Score=31.69 Aligned_cols=52 Identities=21% Similarity=0.252 Sum_probs=37.9
Q ss_pred CCeEEEeccCC-CCC-----CCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEe
Q 024162 36 PQIITQASSLS-QLP-----VESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYK 90 (271)
Q Consensus 36 ~~v~~~~~d~e-~lp-----~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~ 90 (271)
.+|.++++.+. .|+ .+.++||.++.=. |=.+ ...+.+..+.||+||.+++-.
T Consensus 125 ~KI~~i~g~a~esLd~l~~~~~~~tfDfaFvDa---dK~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 125 HKITFIEGPALESLDELLADGESGTFDFAFVDA---DKDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred ceeeeeecchhhhHHHHHhcCCCCceeEEEEcc---chHHHHHHHHHHHhhcccccEEEEec
Confidence 46788888664 332 4678999998732 2222 578899999999999999865
No 218
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=69.37 E-value=12 Score=34.52 Aligned_cols=77 Identities=14% Similarity=0.137 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCC-CC-C-CCCceeEEEe---ccccccC---Ch-HHHHHHHHHhccCCcE
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQ-LP-V-ESFSIDTVLS---ISSSHEL---PG-DQLLEEISRVLKPGGT 85 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~-lp-~-~~~sfD~V~s---~~~l~~~---~~-~~~L~ei~RvLKPGG~ 85 (271)
|..+++.+++...-. .-....+.|+++|+-. +. + ....||+|+. .+.-..+ .+ ..++..+.++|+|||.
T Consensus 155 S~~al~~a~~N~~lN-g~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~ 233 (286)
T PF10672_consen 155 SKRALEWAKENAALN-GLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGL 233 (286)
T ss_dssp -HHHHHHHHHHHHHT-T-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEE
T ss_pred CHHHHHHHHHHHHHc-CCCccceEEEecCHHHHHHHHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCE
Confidence 677788888753111 0122468899888754 22 1 2468999998 2221111 12 6788889999999999
Q ss_pred EEEEecCC
Q 024162 86 ILIYKKLT 93 (271)
Q Consensus 86 l~i~~~~~ 93 (271)
|++.....
T Consensus 234 l~~~scs~ 241 (286)
T PF10672_consen 234 LLTCSCSH 241 (286)
T ss_dssp EEEEE--T
T ss_pred EEEEcCCc
Confidence 98887654
No 219
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=68.95 E-value=15 Score=30.99 Aligned_cols=75 Identities=16% Similarity=0.213 Sum_probs=48.0
Q ss_pred ccCCCCC----CCCCceeEEEecccccc---------C--C-h--HHHHHHHHHhccCCcEEEEEecCCCCcccHHHHHH
Q 024162 43 SSLSQLP----VESFSIDTVLSISSSHE---------L--P-G--DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAIS 104 (271)
Q Consensus 43 ~d~e~lp----~~~~sfD~V~s~~~l~~---------~--~-~--~~~L~ei~RvLKPGG~l~i~~~~~~~~~e~~~~~~ 104 (271)
.|+..+. +....||.|+-++...- + + . ..+++...++|+++|.++|+-.....- ..|
T Consensus 60 VDat~l~~~~~~~~~~FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py----~~W- 134 (166)
T PF10354_consen 60 VDATKLHKHFRLKNQRFDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPY----DSW- 134 (166)
T ss_pred CCCCcccccccccCCcCCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCC----ccc-
Confidence 3455553 35688999998775333 0 0 1 567888889999999999987543221 112
Q ss_pred HHHHHHHHcCCcchhhhh
Q 024162 105 ALEGKLLLAGFLDAQRIQ 122 (271)
Q Consensus 105 ~l~~~l~laGF~~v~~~~ 122 (271)
.+......+||+-++...
T Consensus 135 ~i~~lA~~~gl~l~~~~~ 152 (166)
T PF10354_consen 135 NIEELAAEAGLVLVRKVP 152 (166)
T ss_pred cHHHHHHhcCCEEEEEec
Confidence 344566778888765543
No 220
>PF14801 GCD14_N: tRNA methyltransferase complex GCD14 subunit N-term; PDB: 1I9G_A.
Probab=67.10 E-value=2.7 Score=28.95 Aligned_cols=13 Identities=38% Similarity=0.943 Sum_probs=8.5
Q ss_pred CCCCCCeEEecCc
Q 024162 253 PFKLGEKVSLSSN 265 (271)
Q Consensus 253 afkpGe~v~l~~~ 265 (271)
||++||+|+|.+.
T Consensus 5 pf~~GdrVQlTD~ 17 (54)
T PF14801_consen 5 PFRAGDRVQLTDP 17 (54)
T ss_dssp S--TT-EEEEEET
T ss_pred CCCCCCEEEEccC
Confidence 7999999999864
No 221
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=66.82 E-value=9.9 Score=36.60 Aligned_cols=99 Identities=13% Similarity=0.066 Sum_probs=62.4
Q ss_pred HHHHHHHHHHh----CchhhhcCCCCeEEEeccCCCC-CCCCCceeEEEecc------ccccCChHHHHHHHHHhccCCc
Q 024162 16 VSAVLNAIRDL----GDEAVEQCDPQIITQASSLSQL-PVESFSIDTVLSIS------SSHELPGDQLLEEISRVLKPGG 84 (271)
Q Consensus 16 s~~mv~~ar~~----~~~~~~~~~~~v~~~~~d~e~l-p~~~~sfD~V~s~~------~l~~~~~~~~L~ei~RvLKPGG 84 (271)
-++|++.+++. .-...+-.++++..+..|+-+. --..+.||+|+.-. ++--+...++..-+.|.|+++|
T Consensus 322 DP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~G 401 (508)
T COG4262 322 DPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETG 401 (508)
T ss_pred CHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCc
Confidence 56888888742 1111123567788877777544 23456899998732 2333344788899999999999
Q ss_pred EEEEEecCCCCcccHHHHHHHHHHHHHHcCCcc
Q 024162 85 TILIYKKLTSDKGDVDKAISALEGKLLLAGFLD 117 (271)
Q Consensus 85 ~l~i~~~~~~~~~e~~~~~~~l~~~l~laGF~~ 117 (271)
.++++-..+-... +..| .+...++.+||..
T Consensus 402 l~VvQags~y~tp--~vfw-~i~aTik~AG~~~ 431 (508)
T COG4262 402 LMVVQAGSPYFTP--RVFW-RIDATIKSAGYRV 431 (508)
T ss_pred eEEEecCCCccCC--ceee-eehhHHHhCccee
Confidence 9999875532110 1111 3456688899864
No 222
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=66.11 E-value=10 Score=36.33 Aligned_cols=47 Identities=17% Similarity=0.241 Sum_probs=33.5
Q ss_pred CCCCC-CCceeEEEeccccccCCh----HHHHHHHHHhccCCcEEEEEecCC
Q 024162 47 QLPVE-SFSIDTVLSISSSHELPG----DQLLEEISRVLKPGGTILIYKKLT 93 (271)
Q Consensus 47 ~lp~~-~~sfD~V~s~~~l~~~~~----~~~L~ei~RvLKPGG~l~i~~~~~ 93 (271)
.++++ ...|++|+...-+.+... ...+..+..++.|||.|+|.+.+.
T Consensus 177 Rl~lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGt 228 (484)
T COG5459 177 RLSLPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGT 228 (484)
T ss_pred ccCCCccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCC
Confidence 44544 346888777654443333 448899999999999999999773
No 223
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=64.96 E-value=10 Score=34.27 Aligned_cols=56 Identities=21% Similarity=0.283 Sum_probs=39.1
Q ss_pred CeEEEeccCCCCC--------CCCCceeEEEe-----ccccccCCh-------HHHHHHHHHhccCCcEEEEEecC
Q 024162 37 QIITQASSLSQLP--------VESFSIDTVLS-----ISSSHELPG-------DQLLEEISRVLKPGGTILIYKKL 92 (271)
Q Consensus 37 ~v~~~~~d~e~lp--------~~~~sfD~V~s-----~~~l~~~~~-------~~~L~ei~RvLKPGG~l~i~~~~ 92 (271)
.|..+++|+++.. |..+.-|+|++ ...+|.+.. -.+|+-..+||||||.|+-.-+.
T Consensus 90 GV~qlq~DIT~~stae~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifR 165 (294)
T KOG1099|consen 90 GVIQLQGDITSASTAEAIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFR 165 (294)
T ss_pred ceEEeecccCCHhHHHHHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhc
Confidence 3566778887653 56678899998 345666643 34566677999999999866543
No 224
>PF06557 DUF1122: Protein of unknown function (DUF1122); InterPro: IPR008304 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2ARH_C.
Probab=64.48 E-value=18 Score=30.68 Aligned_cols=67 Identities=25% Similarity=0.270 Sum_probs=35.3
Q ss_pred HHHHHHHHHhccCCcEEEEEecCCCCcccHHH--------HHHHHHHHHHHcCCcchhhhhhccccCcce--eEEEEEee
Q 024162 70 DQLLEEISRVLKPGGTILIYKKLTSDKGDVDK--------AISALEGKLLLAGFLDAQRIQLKSVVPAEV--VSFGVKGK 139 (271)
Q Consensus 70 ~~~L~ei~RvLKPGG~l~i~~~~~~~~~e~~~--------~~~~l~~~l~laGF~~v~~~~~~~~~~~~~--~~~~i~a~ 139 (271)
..++.-+++.|.|||+|++.-... .+... ....|-..|..+||+-...|... .+. ....+.|.
T Consensus 66 ~~l~~~~~~~l~pg~~lfVeY~~D---~eT~~~L~~G~pp~~TrLG~~Ll~~GFtwfKdWYfP----EG~~EGg~KlQa~ 138 (170)
T PF06557_consen 66 DELYKLFSRYLEPGGRLFVEYVED---RETRRQLQRGVPPAETRLGFSLLKAGFTWFKDWYFP----EGGMEGGPKLQAE 138 (170)
T ss_dssp HHHHHHHHTT----SEEEEE-TT----HHHHHHHHTT--GGGSHHHHHHHTTT--EEEEEE------TTTSTT-EEEEEE
T ss_pred HHHHHHHHHHhhhcCeEEEEEecC---HHHHHHHHcCCCcccchhHHHHHhCCcEEEeeeecc----CccccCCceeeee
Confidence 678899999999999999886531 11111 11245567899999988776531 222 45568888
Q ss_pred CCCc
Q 024162 140 KPTW 143 (271)
Q Consensus 140 KPs~ 143 (271)
||--
T Consensus 139 Kpl~ 142 (170)
T PF06557_consen 139 KPLN 142 (170)
T ss_dssp --SS
T ss_pred cCCC
Confidence 8853
No 225
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=64.47 E-value=4.6 Score=34.26 Aligned_cols=23 Identities=48% Similarity=0.820 Sum_probs=19.7
Q ss_pred HHHHHHHHHhccCCcEEEEEecC
Q 024162 70 DQLLEEISRVLKPGGTILIYKKL 92 (271)
Q Consensus 70 ~~~L~ei~RvLKPGG~l~i~~~~ 92 (271)
...+.+++|+|||||.+++....
T Consensus 36 ~~~~~~~~rvLk~~g~~~i~~~~ 58 (231)
T PF01555_consen 36 EEWLKECYRVLKPGGSIFIFIDD 58 (231)
T ss_dssp HHHHHHHHHHEEEEEEEEEEE-C
T ss_pred HHHHHHHHhhcCCCeeEEEEecc
Confidence 67899999999999999887644
No 226
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=63.20 E-value=33 Score=33.53 Aligned_cols=81 Identities=20% Similarity=0.244 Sum_probs=50.6
Q ss_pred cEEEEecCCcccHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCC---CCCCceeEEEecc------------ccccCC
Q 024162 4 AVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLP---VESFSIDTVLSIS------------SSHELP 68 (271)
Q Consensus 4 ~vl~~td~~~~~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp---~~~~sfD~V~s~~------------~l~~~~ 68 (271)
+++++-|....-...+.+.+.+.+ + .+......|...+| |+. +||.|+.=. ...++.
T Consensus 267 G~I~AnD~n~~r~~~l~~n~~rlG---v----~ntiv~n~D~~ef~~~~~~~-~fDRVLLDAPCSGtgvi~K~~~vkt~k 338 (460)
T KOG1122|consen 267 GVIFANDSNENRLKSLKANLHRLG---V----TNTIVSNYDGREFPEKEFPG-SFDRVLLDAPCSGTGVISKDQSVKTNK 338 (460)
T ss_pred ceEEecccchHHHHHHHHHHHHhC---C----CceEEEccCcccccccccCc-ccceeeecCCCCCCcccccccccccch
Confidence 566666666655666777776665 1 22333445555544 555 899998611 011111
Q ss_pred -----------hHHHHHHHHHhccCCcEEEEEecC
Q 024162 69 -----------GDQLLEEISRVLKPGGTILIYKKL 92 (271)
Q Consensus 69 -----------~~~~L~ei~RvLKPGG~l~i~~~~ 92 (271)
..++|-.....++|||+|+.++-+
T Consensus 339 ~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCS 373 (460)
T KOG1122|consen 339 TVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCS 373 (460)
T ss_pred hHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeee
Confidence 256777788999999999998854
No 227
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=61.70 E-value=2.9 Score=31.70 Aligned_cols=54 Identities=19% Similarity=0.221 Sum_probs=34.6
Q ss_pred CCeEEEeccCCCC--CCCCCceeEEEeccccccCCh-HHHHHHHHHhccCCcEEEEEe
Q 024162 36 PQIITQASSLSQL--PVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIYK 90 (271)
Q Consensus 36 ~~v~~~~~d~e~l--p~~~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l~i~~ 90 (271)
.++.++.++.... .++...||+|+.=.. |.... ...+..+.+.|+|||.+++-+
T Consensus 49 ~~~~~~~g~s~~~l~~~~~~~~dli~iDg~-H~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 49 DRVEFIQGDSPDFLPSLPDGPIDLIFIDGD-HSYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp BTEEEEES-THHHHHHHHH--EEEEEEES----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CeEEEEEcCcHHHHHHcCCCCEEEEEECCC-CCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 4588888877533 244679999987432 22223 667888999999999998765
No 228
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=59.98 E-value=3.7 Score=22.76 Aligned_cols=11 Identities=27% Similarity=1.029 Sum_probs=7.4
Q ss_pred cccCCCCCCCC
Q 024162 241 FRCGTCPYKGL 251 (271)
Q Consensus 241 frc~~cpy~g~ 251 (271)
|||.-|+|...
T Consensus 1 y~C~~C~y~t~ 11 (24)
T PF13909_consen 1 YKCPHCSYSTS 11 (24)
T ss_dssp EE-SSSS-EES
T ss_pred CCCCCCCCcCC
Confidence 79999999753
No 229
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=58.14 E-value=58 Score=30.49 Aligned_cols=54 Identities=19% Similarity=0.174 Sum_probs=35.1
Q ss_pred CeEEEeccCCC----CCC--CCCceeEEEec-cccccCCh---HHHHHHHHH-hccCCcEEEEEe
Q 024162 37 QIITQASSLSQ----LPV--ESFSIDTVLSI-SSSHELPG---DQLLEEISR-VLKPGGTILIYK 90 (271)
Q Consensus 37 ~v~~~~~d~e~----lp~--~~~sfD~V~s~-~~l~~~~~---~~~L~ei~R-vLKPGG~l~i~~ 90 (271)
.+.-+.++.++ ++- ......+|+.. +++..+.. ..+|+++++ .|+|||.|++-.
T Consensus 133 ~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 133 RCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred EEEEEEecHHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 34446666643 221 22345666653 45666654 689999999 999999998854
No 230
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=57.94 E-value=24 Score=32.62 Aligned_cols=72 Identities=14% Similarity=0.102 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCC-CCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecC
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPV-ESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKL 92 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~-~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~~ 92 (271)
++.|++.+++..... .-.++.|+++|+..+.. ..+.||+|+..-.-.-+ ...++ ++...++|++.++++...
T Consensus 204 s~~av~~A~~n~~~~---~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr~G~-~~~~~-~~l~~~~~~~ivyvsc~p 276 (315)
T PRK03522 204 SAEAIACAKQSAAEL---GLTNVQFQALDSTQFATAQGEVPDLVLVNPPRRGI-GKELC-DYLSQMAPRFILYSSCNA 276 (315)
T ss_pred CHHHHHHHHHHHHHc---CCCceEEEEcCHHHHHHhcCCCCeEEEECCCCCCc-cHHHH-HHHHHcCCCeEEEEECCc
Confidence 577788887764211 11368999999987643 34579999986432111 13333 444557898888877654
No 231
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=55.35 E-value=36 Score=35.23 Aligned_cols=75 Identities=19% Similarity=0.140 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCC--CCceeEEEecccccc-CCh----HHHHHHHHHhc---cCCcE
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVE--SFSIDTVLSISSSHE-LPG----DQLLEEISRVL---KPGGT 85 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~--~~sfD~V~s~~~l~~-~~~----~~~L~ei~RvL---KPGG~ 85 (271)
.+.|++.++...... .....|.+.++|+.+++.+ .++||+|+++-.+-. +.. ..++.++.+.| .||++
T Consensus 265 d~~av~~A~~N~~~~--g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~ 342 (702)
T PRK11783 265 DPRVIQAARKNARRA--GVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWN 342 (702)
T ss_pred CHHHHHHHHHHHHHc--CCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCe
Confidence 567777777763211 1223578899999888654 357999999765422 221 34444444444 49999
Q ss_pred EEEEecC
Q 024162 86 ILIYKKL 92 (271)
Q Consensus 86 l~i~~~~ 92 (271)
+++....
T Consensus 343 ~~llt~~ 349 (702)
T PRK11783 343 AALFSSS 349 (702)
T ss_pred EEEEeCC
Confidence 9887653
No 232
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=54.76 E-value=22 Score=33.32 Aligned_cols=58 Identities=14% Similarity=0.262 Sum_probs=47.6
Q ss_pred CCeEEEeccCCCCC--CCCCceeEEEeccccccCCh---HHHHHHHHHhccCCcEEEEEecCC
Q 024162 36 PQIITQASSLSQLP--VESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKKLT 93 (271)
Q Consensus 36 ~~v~~~~~d~e~lp--~~~~sfD~V~s~~~l~~~~~---~~~L~ei~RvLKPGG~l~i~~~~~ 93 (271)
.+|..+.+++.++- -+.+++|.++..-+-.|+++ .+++.+|.|-+.||.++++.+...
T Consensus 307 ~RV~ihha~~iE~l~~k~ag~Vdr~iLlDaqdwmtd~qln~lws~isrta~~gA~VifRtaae 369 (414)
T COG5379 307 RRVAIHHADIIELLAGKPAGNVDRYILLDAQDWMTDGQLNSLWSEISRTAEAGARVIFRTAAE 369 (414)
T ss_pred hheeeecccHHHHhccCCCCCcceEEEecchhhcccchHHHHHHHHhhccCCCcEEEEecccc
Confidence 34677788876553 36789999999888888876 889999999999999999987653
No 233
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=53.12 E-value=71 Score=28.84 Aligned_cols=98 Identities=18% Similarity=0.124 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCC-CCCCC-CCceeEEEeccccccCCh-HHHHHHHHHhccCCcEE-EEEec
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLS-QLPVE-SFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTI-LIYKK 91 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e-~lp~~-~~sfD~V~s~~~l~~~~~-~~~L~ei~RvLKPGG~l-~i~~~ 91 (271)
-+++++.+++.+.. .+.+|..++.|+. .+|-. .+.||++++--... ... .-+++.-...||.-|.. ++.-.
T Consensus 76 DeRll~fI~~~a~~----~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPPyT-~~G~~LFlsRgi~~Lk~~g~~gy~~~~ 150 (243)
T PF01861_consen 76 DERLLDFINRVAEE----EGLPIEAVHYDLRDPLPEELRGKFDVFFTDPPYT-PEGLKLFLSRGIEALKGEGCAGYFGFT 150 (243)
T ss_dssp -HHHHHHHHHHHHH----HT--EEEE---TTS---TTTSS-BSEEEE---SS-HHHHHHHHHHHHHTB-STT-EEEEEE-
T ss_pred CHHHHHHHHHHHHH----cCCceEEEEecccccCCHHHhcCCCEEEeCCCCC-HHHHHHHHHHHHHHhCCCCceEEEEEe
Confidence 46677888776422 2356888888875 33322 47999999843211 122 67888889999877743 44332
Q ss_pred CCCCcccHHHHHHHHHHHHHHcCCcchhhh
Q 024162 92 LTSDKGDVDKAISALEGKLLLAGFLDAQRI 121 (271)
Q Consensus 92 ~~~~~~e~~~~~~~l~~~l~laGF~~v~~~ 121 (271)
.. ......|..+++.+...||+.....
T Consensus 151 ~~---~~s~~~~~~~Q~~l~~~gl~i~dii 177 (243)
T PF01861_consen 151 HK---EASPDKWLEVQRFLLEMGLVITDII 177 (243)
T ss_dssp TT---T--HHHHHHHHHHHHTS--EEEEEE
T ss_pred cC---cCcHHHHHHHHHHHHHCCcCHHHHH
Confidence 21 1123456678888889999865443
No 234
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=53.06 E-value=15 Score=33.62 Aligned_cols=83 Identities=19% Similarity=0.303 Sum_probs=52.4
Q ss_pred ccEEEEecCCcccHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCC-C-CCCCceeEEEec--c-c---cc------cC-
Q 024162 3 SAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQL-P-VESFSIDTVLSI--S-S---SH------EL- 67 (271)
Q Consensus 3 ~~vl~~td~~~~~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~l-p-~~~~sfD~V~s~--~-~---l~------~~- 67 (271)
.+.+++.|....-...+.+.+++.+ . .++.....|...+ + .....||.|+.= + . +. |.
T Consensus 110 ~g~i~A~D~~~~Rl~~l~~~~~r~g---~----~~v~~~~~D~~~~~~~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~ 182 (283)
T PF01189_consen 110 KGEIVANDISPKRLKRLKENLKRLG---V----FNVIVINADARKLDPKKPESKFDRVLVDAPCSGLGTIRRNPDIKWRR 182 (283)
T ss_dssp TSEEEEEESSHHHHHHHHHHHHHTT--------SSEEEEESHHHHHHHHHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE
T ss_pred hhHHHHhccCHHHHHHHHHHHHhcC---C----ceEEEEeeccccccccccccccchhhcCCCccchhhhhhccchhhcc
Confidence 4566777777666666666666554 1 4556665666655 2 334469999971 1 1 00 10
Q ss_pred -C---------hHHHHHHHHHhc----cCCcEEEEEecC
Q 024162 68 -P---------GDQLLEEISRVL----KPGGTILIYKKL 92 (271)
Q Consensus 68 -~---------~~~~L~ei~RvL----KPGG~l~i~~~~ 92 (271)
+ ..++|...++.| ||||+++.++=.
T Consensus 183 ~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS 221 (283)
T PF01189_consen 183 SPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCS 221 (283)
T ss_dssp -TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESH
T ss_pred cccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEecc
Confidence 0 146788899999 999999998843
No 235
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=51.63 E-value=36 Score=32.61 Aligned_cols=50 Identities=18% Similarity=0.096 Sum_probs=35.0
Q ss_pred CeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEE
Q 024162 37 QIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIY 89 (271)
Q Consensus 37 ~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~ 89 (271)
.+.+..+|+..+-.....||+|+.-- . -. ...++....+.++|||.++++
T Consensus 108 ~~~v~~~Da~~~l~~~~~fD~V~lDP-~-Gs-~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 108 NEKVFNKDANALLHEERKFDVVDIDP-F-GS-PAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred ceEEEhhhHHHHHhhcCCCCEEEECC-C-CC-cHHHHHHHHHHhcCCCEEEEE
Confidence 35577788765422145799998842 1 11 257788878889999999998
No 236
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=51.08 E-value=55 Score=28.78 Aligned_cols=58 Identities=24% Similarity=0.286 Sum_probs=38.5
Q ss_pred CCeEEEeccCCCCC--------CCCCceeEEEeccc----cccCCh--------HHHHHHHHHhccCCcEEEEEecCC
Q 024162 36 PQIITQASSLSQLP--------VESFSIDTVLSISS----SHELPG--------DQLLEEISRVLKPGGTILIYKKLT 93 (271)
Q Consensus 36 ~~v~~~~~d~e~lp--------~~~~sfD~V~s~~~----l~~~~~--------~~~L~ei~RvLKPGG~l~i~~~~~ 93 (271)
+.|.++++|+..-+ +....+|+|+|=.+ -++..+ ..++.-...+|+|||.|++..+.-
T Consensus 85 ~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg 162 (205)
T COG0293 85 PGVIFLQGDITDEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQG 162 (205)
T ss_pred CCceEEeeeccCccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeC
Confidence 45888899887543 34555799997321 122111 345555667999999999998763
No 237
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=49.69 E-value=46 Score=31.16 Aligned_cols=59 Identities=12% Similarity=0.068 Sum_probs=41.7
Q ss_pred hcCCCCeEEEeccCCCC--CCCCCceeEEEeccccccCCh-----HHHHHHHHHhccCCcEEEEEe
Q 024162 32 EQCDPQIITQASSLSQL--PVESFSIDTVLSISSSHELPG-----DQLLEEISRVLKPGGTILIYK 90 (271)
Q Consensus 32 ~~~~~~v~~~~~d~e~l--p~~~~sfD~V~s~~~l~~~~~-----~~~L~ei~RvLKPGG~l~i~~ 90 (271)
...+++|..+.||...+ -+..+.||+|+.-..-...+. ...+.-+.+.||+||.+..+.
T Consensus 171 gy~~~~v~l~iGDG~~fl~~~~~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 171 GYEGKKVKLLIGDGFLFLEDLKENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred ccCCCceEEEeccHHHHHHHhccCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 35667788888876544 245789999997443222222 567788999999999999875
No 238
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=48.95 E-value=82 Score=21.93 Aligned_cols=65 Identities=14% Similarity=0.200 Sum_probs=36.4
Q ss_pred ccHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEE
Q 024162 14 LPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIY 89 (271)
Q Consensus 14 ~~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~ 89 (271)
-+...+.+++++.+ ..|.......+.++-.+..+ +.+.....+.+..-++++.+.+..||+|++.
T Consensus 5 ~G~~a~~~~L~~~g--------~~v~~~~~~~~~l~~~~~tl---l~i~~~~~~~~~~~~~~l~~~v~~G~~lvl~ 69 (70)
T PF14258_consen 5 NGTYALYQLLEEQG--------VKVERWRKPYEALEADDGTL---LVIGPDLRLSEPEEAEALLEWVEAGNTLVLA 69 (70)
T ss_pred hHHHHHHHHHHHCC--------CeeEEecccHHHhCCCCCEE---EEEeCCCCCCchHHHHHHHHHHHcCCEEEEe
Confidence 34556666666664 34443334445554333333 2222222232246678899999999999985
No 239
>PF11253 DUF3052: Protein of unknown function (DUF3052); InterPro: IPR021412 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=48.83 E-value=88 Score=25.44 Aligned_cols=69 Identities=17% Similarity=0.159 Sum_probs=45.7
Q ss_pred CCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecCCCCcccHHHHHHHHHHHHHHcCCcchhhhh
Q 024162 52 SFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQ 122 (271)
Q Consensus 52 ~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~~~e~~~~~~~l~~~l~laGF~~v~~~~ 122 (271)
+.-+|+|+..+.-.--.-...|--+.+.|..+|.+.+.++..+..+... .+.+......+|++......
T Consensus 43 ddvvD~vllWwR~~DgDL~D~LvDa~~~L~d~G~IWvltPK~gr~g~V~--~~~I~eaA~taGL~~t~~~~ 111 (127)
T PF11253_consen 43 DDVVDVVLLWWRDDDGDLVDALVDARTNLADDGVIWVLTPKAGRPGHVE--PSDIREAAPTAGLVQTKSCA 111 (127)
T ss_pred cccccEEEEEEECCcchHHHHHHHHHhhhcCCCEEEEEccCCCCCCCCC--HHHHHHHHhhcCCeeeeeec
Confidence 4457777764321111116778888999999999999998765433221 23567778999999876554
No 240
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=47.46 E-value=20 Score=33.47 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=21.5
Q ss_pred HHHHHHHHHhccCCcEEEEEecC
Q 024162 70 DQLLEEISRVLKPGGTILIYKKL 92 (271)
Q Consensus 70 ~~~L~ei~RvLKPGG~l~i~~~~ 92 (271)
..+|..+..+|+|||+|.+..++
T Consensus 220 ~~~L~~~~~~L~~gGrl~VISfH 242 (305)
T TIGR00006 220 EEALQFAPNLLAPGGRLSIISFH 242 (305)
T ss_pred HHHHHHHHHHhcCCCEEEEEecC
Confidence 77899999999999999999987
No 241
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=46.72 E-value=70 Score=30.83 Aligned_cols=75 Identities=11% Similarity=0.031 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEecccccc-CCh--------HHHHHHHHHhccCCcEE
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHE-LPG--------DQLLEEISRVLKPGGTI 86 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~-~~~--------~~~L~ei~RvLKPGG~l 86 (271)
...|++.|+..+.. ......|.|.++++..++-+-..+|+|+++-..-. +.+ +.+.+.+.|.++--+++
T Consensus 263 d~r~i~~Ak~NA~~--AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~ 340 (381)
T COG0116 263 DPRHIEGAKANARA--AGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRY 340 (381)
T ss_pred CHHHHHHHHHHHHh--cCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceE
Confidence 46778888876422 12335699999999988654479999999764321 111 33444555666777777
Q ss_pred EEEecC
Q 024162 87 LIYKKL 92 (271)
Q Consensus 87 ~i~~~~ 92 (271)
+++...
T Consensus 341 v~tt~e 346 (381)
T COG0116 341 VFTTSE 346 (381)
T ss_pred EEEccH
Confidence 777643
No 242
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=44.62 E-value=23 Score=33.05 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=21.7
Q ss_pred HHHHHHHHHhccCCcEEEEEecC
Q 024162 70 DQLLEEISRVLKPGGTILIYKKL 92 (271)
Q Consensus 70 ~~~L~ei~RvLKPGG~l~i~~~~ 92 (271)
+.+|..+.++|+|||+|.|..++
T Consensus 224 ~~~L~~a~~~L~~gGRl~VIsFH 246 (314)
T COG0275 224 EEALEAALDLLKPGGRLAVISFH 246 (314)
T ss_pred HHHHHHHHHhhCCCcEEEEEEec
Confidence 78999999999999999999987
No 243
>PF01558 POR: Pyruvate ferredoxin/flavodoxin oxidoreductase; InterPro: IPR019752 This domain is found in prokaryotes. It includes a region of the large protein pyruvate-flavodoxin oxidoreductase and the whole pyruvate ferredoxin oxidoreductase gamma subunit protein. It is not known whether the gamma subunit has a catalytic or regulatory role. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors, 0055114 oxidation-reduction process; PDB: 2RAA_A 3ON3_A 3G2E_A 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B ....
Probab=43.57 E-value=49 Score=27.44 Aligned_cols=39 Identities=28% Similarity=0.491 Sum_probs=28.4
Q ss_pred CCCCCC-CceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecC
Q 024162 47 QLPVES-FSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKL 92 (271)
Q Consensus 47 ~lp~~~-~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~~ 92 (271)
..+.+. ..+|++++.. +..+.....-|||||.+++-...
T Consensus 49 ~~~~~~~~~~Dilv~l~-------~~~~~~~~~~l~~~g~vi~ns~~ 88 (173)
T PF01558_consen 49 IIPSPPVGEADILVALD-------PEALERHLKGLKPGGVVIINSSL 88 (173)
T ss_dssp -SSSS-TSSESEEEESS-------HHHHHHCGTTCETTEEEEEETTT
T ss_pred CccCcccCCCCEEEEcC-------HHHHHHHhcCcCcCeEEEEECCC
Confidence 334444 7999999863 45666888899999999988743
No 244
>PF05566 Pox_vIL-18BP: Orthopoxvirus interleukin 18 binding protein; InterPro: IPR008791 Interleukin-18 (IL-18) is a proinflammatory cytokine that plays a key role in the activation of natural killer and T helper 1 cell responses principally by inducing interferon-gamma (IFN-gamma). Several poxvirus genes encode proteins with sequence similarity to IL-18BPs. It has been shown that vaccinia, ectromelia and cowpox viruses secrete from infected cells a soluble IL-18BP (vIL-18BP) that may modulate the host antiviral response. The expression of vIL-18BPs by distinct poxvirus genera that cause local or general viral dissemination, or persistent or acute infections in the host, emphasises the importance of IL-18 in response to viral infections [].; PDB: 3F62_A.
Probab=42.77 E-value=7.1 Score=30.90 Aligned_cols=13 Identities=46% Similarity=1.382 Sum_probs=9.9
Q ss_pred ccccCCC-CCCCCCCC
Q 024162 240 AFRCGTC-PYKGLPPF 254 (271)
Q Consensus 240 afrc~~c-py~g~paf 254 (271)
-|||+|| -| ||-|
T Consensus 36 ~fhCsGcv~~--~peF 49 (126)
T PF05566_consen 36 EFHCSGCVKY--MPEF 49 (126)
T ss_dssp EEEEEEEE-S--STTS
T ss_pred eEEEechhhh--Cccc
Confidence 5999999 66 6777
No 245
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=42.30 E-value=26 Score=32.44 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=21.4
Q ss_pred HHHHHHHHHhccCCcEEEEEecC
Q 024162 70 DQLLEEISRVLKPGGTILIYKKL 92 (271)
Q Consensus 70 ~~~L~ei~RvLKPGG~l~i~~~~ 92 (271)
..+|..+..+|+|||+|.+..++
T Consensus 216 ~~~L~~~~~~L~~gGrl~visfH 238 (296)
T PRK00050 216 ERALEAALDLLKPGGRLAVISFH 238 (296)
T ss_pred HHHHHHHHHHhcCCCEEEEEecC
Confidence 77899999999999999999987
No 246
>PF11604 CusF_Ec: Copper binding periplasmic protein CusF; InterPro: IPR021647 CusF is a periplasmic protein involved in copper and silver resistance in Escherichia coil. CusF forms a five-stranded beta-barrel OB fold. Cu(I) binds to H36, M47 and M49 which are conserved residues in the protein []. ; PDB: 2L55_A 2VB3_X 1ZEQ_X 2QCP_X 3E6Z_X 2VB2_X.
Probab=41.99 E-value=17 Score=26.05 Aligned_cols=11 Identities=36% Similarity=0.622 Sum_probs=7.2
Q ss_pred CCCCCCeEEec
Q 024162 253 PFKLGEKVSLS 263 (271)
Q Consensus 253 afkpGe~v~l~ 263 (271)
.||+|++|.+.
T Consensus 42 ~l~~Gd~V~F~ 52 (70)
T PF11604_consen 42 GLKPGDKVRFT 52 (70)
T ss_dssp S-STT-EEEEE
T ss_pred cCCCCCEEEEE
Confidence 48899999875
No 247
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=40.99 E-value=94 Score=27.72 Aligned_cols=44 Identities=9% Similarity=0.009 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEecccccc
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHE 66 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~ 66 (271)
.+.|++.++++... ..++.++.+|+..++++ .||.|+++..++.
T Consensus 60 d~~~~~~l~~~~~~-----~~~v~ii~~D~~~~~~~--~~d~Vv~NlPy~i 103 (258)
T PRK14896 60 DPRLAEFLRDDEIA-----AGNVEIIEGDALKVDLP--EFNKVVSNLPYQI 103 (258)
T ss_pred CHHHHHHHHHHhcc-----CCCEEEEEeccccCCch--hceEEEEcCCccc
Confidence 56788888876421 25788999999988876 4899999776543
No 248
>PF05484 LRV_FeS: LRV protein FeS4 cluster; InterPro: IPR008665 This iron sulphur cluster is found at the N terminus of some proteins containing leucine-repeat variant (LRV) repeats (IPR004830 from INTERPRO). These proteins have a two-domain structure, composed of a small N-terminal domain containing a cluster of four Cys residues that houses the 4Fe:4S cluster, and a larger C-terminal domain containing the LRV repeats []. Biochemical studies revealed that the 4Fe:4S cluster is sensitive to oxygen, but does not appear to have reversible redox activity.; PDB: 1LRV_A.
Probab=40.77 E-value=15 Score=25.69 Aligned_cols=16 Identities=31% Similarity=0.764 Sum_probs=8.3
Q ss_pred CCCccccCCCCCCCCC
Q 024162 237 LGDAFRCGTCPYKGLP 252 (271)
Q Consensus 237 lgdafrc~~cpy~g~p 252 (271)
.|=+-.|++|||..+=
T Consensus 8 ~G~~vdC~~C~h~~ll 23 (57)
T PF05484_consen 8 QGPPVDCAGCPHRDLL 23 (57)
T ss_dssp ------TTTSTTCCCC
T ss_pred CCCCcCCCCCcchhhh
Confidence 4778899999999643
No 249
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=40.33 E-value=22 Score=33.17 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=21.6
Q ss_pred HHHHHHHHHhccCCcEEEEEecC
Q 024162 70 DQLLEEISRVLKPGGTILIYKKL 92 (271)
Q Consensus 70 ~~~L~ei~RvLKPGG~l~i~~~~ 92 (271)
..+|..+..+|+|||+|++..++
T Consensus 221 ~~~L~~a~~~L~~gGrl~VISFH 243 (310)
T PF01795_consen 221 ERGLEAAPDLLKPGGRLVVISFH 243 (310)
T ss_dssp HHHHHHHHHHEEEEEEEEEEESS
T ss_pred HHHHHHHHHHhcCCcEEEEEEec
Confidence 78899999999999999999987
No 250
>COG4121 Uncharacterized conserved protein [Function unknown]
Probab=40.21 E-value=63 Score=29.32 Aligned_cols=73 Identities=19% Similarity=0.185 Sum_probs=48.5
Q ss_pred CeEEEeccCC-CCCCCCC---ceeEEEe-ccccccCC---hHHHHHHHHHhccCCcEEEEEecCCCCcccHHHHHHHHHH
Q 024162 37 QIITQASSLS-QLPVESF---SIDTVLS-ISSSHELP---GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEG 108 (271)
Q Consensus 37 ~v~~~~~d~e-~lp~~~~---sfD~V~s-~~~l~~~~---~~~~L~ei~RvLKPGG~l~i~~~~~~~~~e~~~~~~~l~~ 108 (271)
....+.+|+. .+|--+. .+|+++. .++...-+ ..+++.++++..+|||+|.-.... ..+++
T Consensus 147 ~l~l~~gd~~~~~p~~~~~~~~~dAwflDgFsP~kNP~mW~~e~l~~~a~~~~~~~~l~t~ssA-----------~~vRr 215 (252)
T COG4121 147 LLGLVIGDAGDGIPPVPRRRPGTDAWFLDGFRPVKNPEMWEDELLNLMARIPYRDPTLATFAAA-----------IAVRR 215 (252)
T ss_pred eeeeeeeehhhcCCcccccccCccEEecCCccccCChhhccHHHHHHHHhhcCCCCceechHHH-----------HHHHH
Confidence 3445667774 4454444 6899886 22222112 278999999999999999844321 25678
Q ss_pred HHHHcCCcchhh
Q 024162 109 KLLLAGFLDAQR 120 (271)
Q Consensus 109 ~l~laGF~~v~~ 120 (271)
.|..+||.....
T Consensus 216 ~L~~aGF~v~~r 227 (252)
T COG4121 216 RLEQAGFTVEKR 227 (252)
T ss_pred HHHHcCceeeec
Confidence 899999997553
No 251
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=39.96 E-value=30 Score=28.83 Aligned_cols=11 Identities=45% Similarity=0.761 Sum_probs=9.2
Q ss_pred CCCCCCeEEec
Q 024162 253 PFKLGEKVSLS 263 (271)
Q Consensus 253 afkpGe~v~l~ 263 (271)
.+++|++|.|.
T Consensus 58 ~~~vGD~V~v~ 68 (154)
T PRK10862 58 PLVPGQKVELG 68 (154)
T ss_pred CCCCCCEEEEe
Confidence 36999999886
No 252
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=39.74 E-value=68 Score=31.77 Aligned_cols=48 Identities=25% Similarity=0.281 Sum_probs=34.9
Q ss_pred CCCCCCC-ceeEEEeccccccCCh-----HHHHHHHHHhccCCcEEEEEecCCC
Q 024162 47 QLPVESF-SIDTVLSISSSHELPG-----DQLLEEISRVLKPGGTILIYKKLTS 94 (271)
Q Consensus 47 ~lp~~~~-sfD~V~s~~~l~~~~~-----~~~L~ei~RvLKPGG~l~i~~~~~~ 94 (271)
.+|.... .||+|++.+.++++.+ ...-.-+.+..++||.+++.+.+..
T Consensus 266 ~~pi~~~~~yDlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~ 319 (491)
T KOG2539|consen 266 RLPIDIKNGYDLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTT 319 (491)
T ss_pred cCCCCcccceeeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCc
Confidence 3455444 4999999998888765 2334446678899999999987753
No 253
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=39.47 E-value=20 Score=23.50 Aligned_cols=18 Identities=50% Similarity=1.359 Sum_probs=13.8
Q ss_pred CCCCCC------CCccccCCCCCC
Q 024162 232 CGSCGL------GDAFRCGTCPYK 249 (271)
Q Consensus 232 cg~c~l------gdafrc~~cpy~ 249 (271)
||+|.- +|..||..|=|+
T Consensus 5 C~~Cg~~~~~~~~~~irC~~CG~r 28 (44)
T smart00659 5 CGECGRENEIKSKDVVRCRECGYR 28 (44)
T ss_pred CCCCCCEeecCCCCceECCCCCce
Confidence 666654 899999988775
No 254
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=39.43 E-value=3.1e+02 Score=25.22 Aligned_cols=110 Identities=15% Similarity=0.111 Sum_probs=62.8
Q ss_pred cEEEEecCCcccHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCC----CCCCceeEEEeccccccCCh--HHHHHHHH
Q 024162 4 AVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLP----VESFSIDTVLSISSSHELPG--DQLLEEIS 77 (271)
Q Consensus 4 ~vl~~td~~~~~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp----~~~~sfD~V~s~~~l~~~~~--~~~L~ei~ 77 (271)
++.++++-+.-+-+.++.+|+++. +|.-+..|+. .| +.-.-.|+|++-.. -++ .-+.-...
T Consensus 182 G~VYAVEfs~rsGRdL~nmAkkRt---------NiiPIiEDAr-hP~KYRmlVgmVDvIFaDva---qpdq~RivaLNA~ 248 (317)
T KOG1596|consen 182 GCVYAVEFSHRSGRDLINMAKKRT---------NIIPIIEDAR-HPAKYRMLVGMVDVIFADVA---QPDQARIVALNAQ 248 (317)
T ss_pred ceEEEEEecccchHHHHHHhhccC---------CceeeeccCC-CchheeeeeeeEEEEeccCC---Cchhhhhhhhhhh
Confidence 567777888888888999998874 3333434443 22 22235788877432 122 33444567
Q ss_pred HhccCCcEEEEEecCCCC--cccHHHHHHHHHHHHHHcCCcchhhhhhccc
Q 024162 78 RVLKPGGTILIYKKLTSD--KGDVDKAISALEGKLLLAGFLDAQRIQLKSV 126 (271)
Q Consensus 78 RvLKPGG~l~i~~~~~~~--~~e~~~~~~~l~~~l~laGF~~v~~~~~~~~ 126 (271)
-.||+||.|+++-...-. .-.....++.-.+.|...-|...+.+...|+
T Consensus 249 ~FLk~gGhfvisikancidstv~ae~vFa~Ev~klqee~lkP~EqvtLEP~ 299 (317)
T KOG1596|consen 249 YFLKNGGHFVISIKANCIDSTVFAEAVFAAEVKKLQEEQLKPKEQVTLEPF 299 (317)
T ss_pred hhhccCCeEEEEEecccccccccHHHHHHHHHHHHHHhccCchheeccccc
Confidence 889999999998754321 1111122333334566666665555554443
No 255
>PRK00432 30S ribosomal protein S27ae; Validated
Probab=38.37 E-value=17 Score=24.57 Aligned_cols=11 Identities=45% Similarity=1.340 Sum_probs=8.4
Q ss_pred CccccCCCCCC
Q 024162 239 DAFRCGTCPYK 249 (271)
Q Consensus 239 dafrc~~cpy~ 249 (271)
|.|+|..|+|-
T Consensus 36 ~r~~C~~Cgyt 46 (50)
T PRK00432 36 DRWHCGKCGYT 46 (50)
T ss_pred CcEECCCcCCE
Confidence 67888888873
No 256
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=37.97 E-value=35 Score=28.37 Aligned_cols=40 Identities=33% Similarity=0.258 Sum_probs=25.0
Q ss_pred CceeEEEecccc----c----cCCh----HHHHHHHHHhccCCcEEEEEecC
Q 024162 53 FSIDTVLSISSS----H----ELPG----DQLLEEISRVLKPGGTILIYKKL 92 (271)
Q Consensus 53 ~sfD~V~s~~~l----~----~~~~----~~~L~ei~RvLKPGG~l~i~~~~ 92 (271)
..||+|++=.+. + +... ...+.-..+.|+|||.+++..+.
T Consensus 90 ~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~ 141 (181)
T PF01728_consen 90 EKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK 141 (181)
T ss_dssp CSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred cCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence 689999983311 1 1111 33444556789999999998876
No 257
>PF11575 FhuF_C: FhuF 2Fe-2S C-terminal domain; InterPro: IPR024726 Ferric iron reductase (FhuF) is involved in the reduction of ferric iron in cytoplasmic ferrioxamine B []. This entry represents the C-terminal domain that contains 4 conserved cysteine residues found to be part of a 2Fe-2S cluster [].; GO: 0051537 2 iron, 2 sulfur cluster binding
Probab=37.19 E-value=22 Score=19.89 Aligned_cols=12 Identities=42% Similarity=0.822 Sum_probs=8.0
Q ss_pred CCccccCCCCCC
Q 024162 238 GDAFRCGTCPYK 249 (271)
Q Consensus 238 gdafrc~~cpy~ 249 (271)
-++-.|++||-+
T Consensus 11 ~~~~~C~~CP~~ 22 (22)
T PF11575_consen 11 PGGGYCGTCPLL 22 (22)
T ss_pred CCCCccCCCCCC
Confidence 455668888853
No 258
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=36.69 E-value=1e+02 Score=28.27 Aligned_cols=57 Identities=18% Similarity=0.261 Sum_probs=34.6
Q ss_pred eEEEeccCCCCC--CC----CCcee-----EEEeccccccCCh----HHHHHHHHHhccCCcEEEEEecCCC
Q 024162 38 IITQASSLSQLP--VE----SFSID-----TVLSISSSHELPG----DQLLEEISRVLKPGGTILIYKKLTS 94 (271)
Q Consensus 38 v~~~~~d~e~lp--~~----~~sfD-----~V~s~~~l~~~~~----~~~L~ei~RvLKPGG~l~i~~~~~~ 94 (271)
..++++|+.+.. +. .+-+| .|+.+..+||+++ ..+++.+...|-||.+|.++....+
T Consensus 123 t~~v~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d 194 (267)
T PF04672_consen 123 TAYVQADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDD 194 (267)
T ss_dssp EEEEE--TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred EEEEeCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCC
Confidence 678888886532 11 12334 4566777899865 7899999999999999999987643
No 259
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=36.67 E-value=43 Score=26.88 Aligned_cols=13 Identities=23% Similarity=0.368 Sum_probs=9.9
Q ss_pred CCCCCCCeEEecC
Q 024162 252 PPFKLGEKVSLSS 264 (271)
Q Consensus 252 pafkpGe~v~l~~ 264 (271)
...+|||.|.+.-
T Consensus 50 ~~~~~GD~V~v~i 62 (135)
T PF04246_consen 50 IGAKVGDRVEVEI 62 (135)
T ss_pred CCCCCCCEEEEEe
Confidence 4578999998863
No 260
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=35.67 E-value=88 Score=27.70 Aligned_cols=65 Identities=11% Similarity=0.064 Sum_probs=40.1
Q ss_pred cHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCcee---EEEeccccccCChHHHHHHHHHhccCCcEEEEEe
Q 024162 15 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSID---TVLSISSSHELPGDQLLEEISRVLKPGGTILIYK 90 (271)
Q Consensus 15 ~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD---~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~ 90 (271)
..+.|++.++++... ..++.++.+|+..++++ +|| +|+++..++. ....+.++.. .+|+...+..
T Consensus 59 ~d~~~~~~l~~~~~~-----~~~v~v~~~D~~~~~~~--~~d~~~~vvsNlPy~i--~~~il~~ll~--~~~~~~~~~~ 126 (253)
T TIGR00755 59 IDPRLAEILRKLLSL-----YERLEVIEGDALKVDLP--DFPKQLKVVSNLPYNI--SSPLIFKLLE--KPKFRLAVLM 126 (253)
T ss_pred CCHHHHHHHHHHhCc-----CCcEEEEECchhcCChh--HcCCcceEEEcCChhh--HHHHHHHHhc--cCCCceEEEE
Confidence 356788888766421 25688899999998876 577 7777665442 2344444443 5555544433
No 261
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=34.99 E-value=1.1e+02 Score=28.98 Aligned_cols=71 Identities=11% Similarity=0.080 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCC-CCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEec
Q 024162 16 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPV-ESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKK 91 (271)
Q Consensus 16 s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~-~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~ 91 (271)
+..+++.+++..... .-.++.|..+++++... ....||+|+..-.-..+ ...++..+. .++|++.++++..
T Consensus 264 ~~~av~~a~~N~~~~---~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~G~-~~~~l~~l~-~~~p~~ivyvsc~ 335 (374)
T TIGR02085 264 ESEAIACAQQSAQML---GLDNLSFAALDSAKFATAQMSAPELVLVNPPRRGI-GKELCDYLS-QMAPKFILYSSCN 335 (374)
T ss_pred CHHHHHHHHHHHHHc---CCCcEEEEECCHHHHHHhcCCCCCEEEECCCCCCC-cHHHHHHHH-hcCCCeEEEEEeC
Confidence 455666666553111 11368899999875421 22469999886442211 256666665 4799999988864
No 262
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=34.10 E-value=82 Score=24.26 Aligned_cols=76 Identities=14% Similarity=0.072 Sum_probs=46.7
Q ss_pred cEEEEecCCcccHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccccccCChHHHHHHHHHhccCC
Q 024162 4 AVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPG 83 (271)
Q Consensus 4 ~vl~~td~~~~~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPG 83 (271)
++|++-... -.|..+.+.+++..+ ..+..+...+....+++-..+.||+|+...-. .-.+.++...+.+-
T Consensus 2 ~Ill~C~~G-aSSs~la~km~~~a~----~~gi~~~i~a~~~~e~~~~~~~~Dvill~PQv-----~~~~~~i~~~~~~~ 71 (99)
T cd05565 2 NVLVLCAGG-GTSGLLANALNKGAK----ERGVPLEAAAGAYGSHYDMIPDYDLVILAPQM-----ASYYDELKKDTDRL 71 (99)
T ss_pred EEEEECCCC-CCHHHHHHHHHHHHH----HCCCcEEEEEeeHHHHHHhccCCCEEEEcChH-----HHHHHHHHHHhhhc
Confidence 356666444 555555555555431 12255677777777776666679998875322 33467788888887
Q ss_pred cEEEEE
Q 024162 84 GTILIY 89 (271)
Q Consensus 84 G~l~i~ 89 (271)
|.-+..
T Consensus 72 ~ipv~~ 77 (99)
T cd05565 72 GIKLVT 77 (99)
T ss_pred CCCEEE
Confidence 775543
No 263
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=32.05 E-value=2.6e+02 Score=23.93 Aligned_cols=38 Identities=13% Similarity=0.172 Sum_probs=24.4
Q ss_pred CceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEe
Q 024162 53 FSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYK 90 (271)
Q Consensus 53 ~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~ 90 (271)
..||+|+.........+....+.+.+-++-||-|+..-
T Consensus 51 ~~~Dvvv~~~~~~~~l~~~~~~al~~~v~~Ggglv~lH 88 (217)
T PF06283_consen 51 KGYDVVVFYNTGGDELTDEQRAALRDYVENGGGLVGLH 88 (217)
T ss_dssp CT-SEEEEE-SSCCGS-HHHHHHHHHHHHTT-EEEEEG
T ss_pred cCCCEEEEECCCCCcCCHHHHHHHHHHHHcCCCEEEEc
Confidence 68999998765532224566777888888888888775
No 264
>cd05794 S1_EF-P_repeat_2 S1_EF-P_repeat_2: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1. EF-P stimulates the peptidyltransferase activity in the prokaryotic 70S ribosome. EF-P enhances the synthesis of certain dipeptides with N-formylmethionyl-tRNA and puromycine in vitro. EF-P binds to both the 30S and 50S ribosomal subunits. EF-P binds near the streptomycine binding site of the 16S rRNA in the 30S subunit. EF-P interacts with domains 2 and 5 of the 23S rRNA. The L16 ribosomal protein of the 50S or its N-terminal fragment are required for EF-P mediated peptide bond synthesis, whereas L11, L15, and L7/L12 are not required in this reaction, suggesting that EF-P may function at a different ribosomal site than most other translation factors. EF-P is essential for cell viability and is required for protein synthesis. EF-P is mainly present in bacteria. The EF-P homologs in archaea and eukaryotes are the initiation factors aIF5A and eIF5A, respectively. EF-P
Probab=31.43 E-value=32 Score=23.84 Aligned_cols=15 Identities=40% Similarity=0.782 Sum_probs=11.3
Q ss_pred CCCC-CCCCeEEecCc
Q 024162 251 LPPF-KLGEKVSLSSN 265 (271)
Q Consensus 251 ~paf-kpGe~v~l~~~ 265 (271)
-|.| +.||+|+++.+
T Consensus 34 VP~FI~~Gd~I~V~T~ 49 (56)
T cd05794 34 VPLFIKEGEKIKVDTR 49 (56)
T ss_pred cCCeecCCCEEEEECC
Confidence 4777 78888887754
No 265
>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif in ribosomal proteins, NusG, Spt5p, KIN17 and T54.
Probab=31.24 E-value=36 Score=19.03 Aligned_cols=15 Identities=20% Similarity=0.483 Sum_probs=11.9
Q ss_pred CCCCCCeEEecCccc
Q 024162 253 PFKLGEKVSLSSNFL 267 (271)
Q Consensus 253 afkpGe~v~l~~~~l 267 (271)
.|++|++|.+....+
T Consensus 1 ~~~~G~~V~I~~G~~ 15 (28)
T smart00739 1 KFEVGDTVRVIAGPF 15 (28)
T ss_pred CCCCCCEEEEeECCC
Confidence 489999999986554
No 266
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=30.62 E-value=1e+02 Score=29.01 Aligned_cols=41 Identities=15% Similarity=0.150 Sum_probs=29.8
Q ss_pred CceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecCC
Q 024162 53 FSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLT 93 (271)
Q Consensus 53 ~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~~~ 93 (271)
..||.|+....-..-..+-.|.++.+.|+|||.+++.-...
T Consensus 75 ~~~d~~~~~~pk~k~~~~~~l~~~~~~l~~g~~i~~~G~~~ 115 (342)
T PRK09489 75 ADCDTLIYYWPKNKQEAQFQLMNLLSLLPVGTDIFVVGENR 115 (342)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHhCCCCCEEEEEEecc
Confidence 57998887543222112667899999999999999986553
No 267
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=30.61 E-value=22 Score=29.64 Aligned_cols=12 Identities=42% Similarity=0.764 Sum_probs=9.8
Q ss_pred CCCCCCCeEEec
Q 024162 252 PPFKLGEKVSLS 263 (271)
Q Consensus 252 pafkpGe~v~l~ 263 (271)
=|.+|||+|.|.
T Consensus 57 ~pL~~Gq~VeiG 68 (150)
T COG3086 57 EPLEPGQKVELG 68 (150)
T ss_pred CcCCCCCEEEEc
Confidence 368999999885
No 268
>PF12353 eIF3g: Eukaryotic translation initiation factor 3 subunit G ; InterPro: IPR024675 At least eleven different protein factors are involved in initiation of protein synthesis in eukaryotes. Binding of initiator tRNA and mRNA to the 40S subunit requires the presence of the translation initiation factors eIF-2 and eIF-3, with eIF-3 being particularly important for 80S ribosome dissociation and mRNA binding []. eIF-3 is the most complex translation inititation factor, consisting of about 13 putative subunits and having a molecular weight of between 550 - 700 kDa in mammalian cells. Subunits are designated eIF-3a - eIF-3m; the large number of subunits means that the interactions between the individual subunits that make up the eIF-3 complex are complex and varied. Subunit G is required for eIF3 integrity. This entry represents a domain of approximately 130 amino acids in length found at the N terminus of eukaryotic translation initiation factor 3 subunit G. This domain is commonly found in association with the RNA recognition domain PF00076 from PFAM.
Probab=29.55 E-value=30 Score=27.98 Aligned_cols=23 Identities=35% Similarity=0.923 Sum_probs=18.7
Q ss_pred CCCCCCCCCCCCCccccCCCCCCCC
Q 024162 227 NPQSACGSCGLGDAFRCGTCPYKGL 251 (271)
Q Consensus 227 ~~~s~cg~c~lgdafrc~~cpy~g~ 251 (271)
...-.|-.|. ||-|- +.|||.++
T Consensus 104 ~~~v~CR~Ck-GdH~T-~~CPyKd~ 126 (128)
T PF12353_consen 104 KSKVKCRICK-GDHWT-SKCPYKDT 126 (128)
T ss_pred CceEEeCCCC-CCccc-ccCCcccc
Confidence 3467899996 99996 78999864
No 269
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=29.29 E-value=3.5e+02 Score=22.87 Aligned_cols=55 Identities=15% Similarity=0.018 Sum_probs=30.9
Q ss_pred CeEEEeccCCC-CC-C-CC-CceeEEEeccccccCChHHHHHHHH--HhccCCcEEEEEec
Q 024162 37 QIITQASSLSQ-LP-V-ES-FSIDTVLSISSSHELPGDQLLEEIS--RVLKPGGTILIYKK 91 (271)
Q Consensus 37 ~v~~~~~d~e~-lp-~-~~-~sfD~V~s~~~l~~~~~~~~L~ei~--RvLKPGG~l~i~~~ 91 (271)
++.++.+|+.. +. + .. ..||+|+.--.+..-....++..+. .+|+++|.+++...
T Consensus 100 ~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 100 QAEVVRNSALRALKFLAKKPTFDNVIYLDPPFFNGALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred cEEEEehhHHHHHHHhhccCCCceEEEECcCCCCCcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 56778888843 22 2 12 2478888743332211245555554 36888887776543
No 270
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=29.07 E-value=1.4e+02 Score=27.93 Aligned_cols=39 Identities=26% Similarity=0.401 Sum_probs=31.0
Q ss_pred ceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecC
Q 024162 54 SIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKL 92 (271)
Q Consensus 54 sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~~ 92 (271)
.||+|+.-..-+--..+..|.++.+.|.|||.+++.-..
T Consensus 37 ~~d~~l~~~pK~~~e~e~qLa~ll~~~~~g~~i~v~g~~ 75 (300)
T COG2813 37 DFDAVLLYWPKHKAEAEFQLAQLLARLPPGGEIVVVGEK 75 (300)
T ss_pred CCCEEEEEccCchHHHHHHHHHHHhhCCCCCeEEEEecc
Confidence 899998865544334477899999999999999988654
No 271
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=28.77 E-value=39 Score=20.67 Aligned_cols=13 Identities=38% Similarity=0.902 Sum_probs=9.4
Q ss_pred CCCccccCCCCCC
Q 024162 237 LGDAFRCGTCPYK 249 (271)
Q Consensus 237 lgdafrc~~cpy~ 249 (271)
-+|+-||--|=|+
T Consensus 14 ~~~~irC~~CG~R 26 (32)
T PF03604_consen 14 PGDPIRCPECGHR 26 (32)
T ss_dssp TSSTSSBSSSS-S
T ss_pred CCCcEECCcCCCe
Confidence 3788898888765
No 272
>KOG2906 consensus RNA polymerase III subunit C11 [Transcription]
Probab=28.48 E-value=23 Score=27.52 Aligned_cols=10 Identities=60% Similarity=1.477 Sum_probs=9.3
Q ss_pred ccccCCCCCC
Q 024162 240 AFRCGTCPYK 249 (271)
Q Consensus 240 afrc~~cpy~ 249 (271)
.|-|.+|||.
T Consensus 21 rf~C~tCpY~ 30 (105)
T KOG2906|consen 21 RFSCRTCPYV 30 (105)
T ss_pred eEEcCCCCce
Confidence 6999999997
No 273
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=27.15 E-value=1.1e+02 Score=23.48 Aligned_cols=36 Identities=25% Similarity=0.487 Sum_probs=29.4
Q ss_pred CceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecCC
Q 024162 53 FSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLT 93 (271)
Q Consensus 53 ~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~~~ 93 (271)
..+|+|+-... ....+++...+|+|+|++++.-...
T Consensus 57 ~~~d~vid~~g-----~~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 57 RGVDVVIDCVG-----SGDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp SSEEEEEESSS-----SHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred ccceEEEEecC-----cHHHHHHHHHHhccCCEEEEEEccC
Confidence 57999987542 3678999999999999999987664
No 274
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=26.79 E-value=3.4e+02 Score=23.80 Aligned_cols=98 Identities=16% Similarity=0.136 Sum_probs=59.2
Q ss_pred EEEEecCCcccHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEeccc---------------cccCC-
Q 024162 5 VLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISS---------------SHELP- 68 (271)
Q Consensus 5 vl~~td~~~~~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~---------------l~~~~- 68 (271)
+-+.||..+...+.-.+.|+... .++..++.|+... +..++.|+++-+-. +.|..
T Consensus 70 ~~latDiNp~A~~~Tl~TA~~n~--------~~~~~V~tdl~~~-l~~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG 140 (209)
T KOG3191|consen 70 LYLATDINPEALEATLETARCNR--------VHIDVVRTDLLSG-LRNESVDVLVFNPPYVPTSDEEIGDEGIASAWAGG 140 (209)
T ss_pred eEEEecCCHHHHHHHHHHHHhcC--------CccceeehhHHhh-hccCCccEEEECCCcCcCCcccchhHHHHHHHhcC
Confidence 34567777777777677777654 3455666666433 33488998876431 11321
Q ss_pred -h-----HHHHHHHHHhccCCcEEEEEecCCCCcccHHHHHHHHHHHHHHcCCcch
Q 024162 69 -G-----DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDA 118 (271)
Q Consensus 69 -~-----~~~L~ei~RvLKPGG~l~i~~~~~~~~~e~~~~~~~l~~~l~laGF~~v 118 (271)
+ +.++.++-.+|.|.|.|++........ .++...++--||...
T Consensus 141 ~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p-------~ei~k~l~~~g~~~~ 189 (209)
T KOG3191|consen 141 KDGREVTDRLLPQVPDILSPRGVFYLVALRANKP-------KEILKILEKKGYGVR 189 (209)
T ss_pred cchHHHHHHHHhhhhhhcCcCceEEeeehhhcCH-------HHHHHHHhhccccee
Confidence 1 445666667888999999987653211 134445666677643
No 275
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=26.30 E-value=43 Score=22.91 Aligned_cols=11 Identities=55% Similarity=0.924 Sum_probs=9.8
Q ss_pred CCCCCeEEecC
Q 024162 254 FKLGEKVSLSS 264 (271)
Q Consensus 254 fkpGe~v~l~~ 264 (271)
||+|+.|+|-+
T Consensus 1 f~~GDvV~LKS 11 (53)
T PF09926_consen 1 FKIGDVVQLKS 11 (53)
T ss_pred CCCCCEEEEcc
Confidence 89999999964
No 276
>PF12225 MTHFR_C: Methylene-tetrahydrofolate reductase C terminal; InterPro: IPR022026 This family is found in bacteria and archaea, and is approximately 100 amino acids in length. There is a conserved NGPCGG sequence motif. This family is the C-terminal of methylene-tetrahydrofolate reductase. This protein reduces FAD using the reducing equivalents from reduced FAD, subsequently reduces tetrahydrofolate. The C-terminal of MTHFR contains the FAD binding site and is the catalytic portion of the enzyme.
Probab=26.13 E-value=32 Score=26.63 Aligned_cols=12 Identities=58% Similarity=1.179 Sum_probs=10.4
Q ss_pred CCCCCCCCCCCc
Q 024162 229 QSACGSCGLGDA 240 (271)
Q Consensus 229 ~s~cg~c~lgda 240 (271)
=.+||.|.|++-
T Consensus 23 C~~CG~C~L~~T 34 (97)
T PF12225_consen 23 CRACGDCVLGDT 34 (97)
T ss_pred CCCCCCcccccc
Confidence 589999999984
No 277
>PHA01519 hypothetical protein
Probab=25.13 E-value=31 Score=27.33 Aligned_cols=13 Identities=31% Similarity=0.281 Sum_probs=11.2
Q ss_pred CCCCCCCCCCCCe
Q 024162 247 PYKGLPPFKLGEK 259 (271)
Q Consensus 247 py~g~pafkpGe~ 259 (271)
++.|+|+||||+.
T Consensus 21 ~~~g~~~~~~~~~ 33 (115)
T PHA01519 21 IFKGLWACKPETS 33 (115)
T ss_pred HhccCcccccccc
Confidence 5689999999975
No 278
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=24.89 E-value=95 Score=26.43 Aligned_cols=56 Identities=18% Similarity=0.130 Sum_probs=35.0
Q ss_pred CeEEEeccCC-CCC---CCCCceeEEEeccccccCCh-HHHHHHHH--HhccCCcEEEEEecC
Q 024162 37 QIITQASSLS-QLP---VESFSIDTVLSISSSHELPG-DQLLEEIS--RVLKPGGTILIYKKL 92 (271)
Q Consensus 37 ~v~~~~~d~e-~lp---~~~~sfD~V~s~~~l~~~~~-~~~L~ei~--RvLKPGG~l~i~~~~ 92 (271)
++..+..|.. .++ .....||+|+.--.+..-.. ..++..+. .+|+++|.+++....
T Consensus 93 ~~~v~~~d~~~~l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~ 155 (183)
T PF03602_consen 93 KIRVIKGDAFKFLLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEHSK 155 (183)
T ss_dssp GEEEEESSHHHHHHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEET
T ss_pred ceeeeccCHHHHHHhhcccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEecC
Confidence 3555666632 332 24689999998544433332 66777776 799999999887754
No 279
>PRK08537 2-oxoglutarate ferredoxin oxidoreductase subunit gamma; Validated
Probab=24.76 E-value=2e+02 Score=23.91 Aligned_cols=31 Identities=26% Similarity=0.446 Sum_probs=22.3
Q ss_pred CceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEe
Q 024162 53 FSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYK 90 (271)
Q Consensus 53 ~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~ 90 (271)
..+|++++.. +..+.....-|||||.+++-.
T Consensus 66 ~~~D~lval~-------~~~~~~~~~~l~~~g~vi~n~ 96 (177)
T PRK08537 66 ISPDILVAMS-------QEAYDKYLDDLKEGGTVIVDP 96 (177)
T ss_pred CCCCEEEEeC-------HHHHHHHHhccCCCeEEEEEC
Confidence 4578888864 233456678899999998764
No 280
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=24.75 E-value=1.7e+02 Score=27.93 Aligned_cols=74 Identities=8% Similarity=0.042 Sum_probs=45.9
Q ss_pred EEEecCCcccHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCC-CCCCceeEEEeccccccCChHHHHHHHHHhccCCc
Q 024162 6 LALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLP-VESFSIDTVLSISSSHELPGDQLLEEISRVLKPGG 84 (271)
Q Consensus 6 l~~td~~~~~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp-~~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG 84 (271)
++..|......+.+.+-++... . .++.+..+|+..+- .....||+|..-- + . .+..++..+.+.+++||
T Consensus 72 Vv~nD~n~~Av~~i~~N~~~N~---~----~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f-G-s~~~fld~al~~~~~~g 141 (374)
T TIGR00308 72 VFANDINPKAVESIKNNVEYNS---V----ENIEVPNEDAANVLRYRNRKFHVIDIDP-F-G-TPAPFVDSAIQASAERG 141 (374)
T ss_pred EEEEeCCHHHHHHHHHHHHHhC---C----CcEEEEchhHHHHHHHhCCCCCEEEeCC-C-C-CcHHHHHHHHHhcccCC
Confidence 4555555555444444333322 1 24667777776542 1235799998732 2 1 12578999999999999
Q ss_pred EEEEE
Q 024162 85 TILIY 89 (271)
Q Consensus 85 ~l~i~ 89 (271)
.|+++
T Consensus 142 lL~vT 146 (374)
T TIGR00308 142 LLLVT 146 (374)
T ss_pred EEEEE
Confidence 99998
No 281
>COG2093 DNA-directed RNA polymerase, subunit E'' [Transcription]
Probab=24.22 E-value=19 Score=25.64 Aligned_cols=8 Identities=88% Similarity=1.601 Sum_probs=6.5
Q ss_pred cccCCCCC
Q 024162 197 TRKACKNC 204 (271)
Q Consensus 197 ~~~ack~c 204 (271)
..||||||
T Consensus 3 ~~kAC~~C 10 (64)
T COG2093 3 TEKACKNC 10 (64)
T ss_pred hhHHHhhc
Confidence 46899998
No 282
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=23.62 E-value=2.1e+02 Score=21.09 Aligned_cols=47 Identities=23% Similarity=0.223 Sum_probs=29.5
Q ss_pred ccccccCCh--HHHHHHHHHhc-cCCcEEEEEecCCCCcccHHHHHHHHHHHHHHcCCcch
Q 024162 61 ISSSHELPG--DQLLEEISRVL-KPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDA 118 (271)
Q Consensus 61 ~~~l~~~~~--~~~L~ei~RvL-KPGG~l~i~~~~~~~~~e~~~~~~~l~~~l~laGF~~v 118 (271)
....+++.. -.+|.++++-+ +.|+.+++..... .+.+.+...||...
T Consensus 46 ls~v~~iDssgl~~L~~l~~~~~~~g~~l~l~~~~~-----------~v~~~l~~~gl~~~ 95 (100)
T cd06844 46 ISALEFMDSSGTGVLLERSRLAEAVGGQFVLTGISP-----------AVRITLTESGLDKG 95 (100)
T ss_pred CCCCcEEcHHHHHHHHHHHHHHHHcCCEEEEECCCH-----------HHHHHHHHhCchhh
Confidence 333444443 45566666555 4788888887652 45667788888753
No 283
>PF02150 RNA_POL_M_15KD: RNA polymerases M/15 Kd subunit; InterPro: IPR001529 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. In archaebacteria, there is generally a single form of RNA polymerase which also consist of an oligomeric assemblage of 10 to 13 polypeptides. It has recently been shown [], [] that small subunits of about 15 kDa, found in polymerase types I and II, are highly conserved. These proteins contain a probable zinc finger in their N-terminal region and a C-terminal zinc ribbon domain (see IPR001222 from INTERPRO).; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3H0G_I 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I ....
Probab=23.10 E-value=34 Score=21.18 Aligned_cols=8 Identities=50% Similarity=1.302 Sum_probs=5.9
Q ss_pred ccCCCCCC
Q 024162 242 RCGTCPYK 249 (271)
Q Consensus 242 rc~~cpy~ 249 (271)
+|.+|||.
T Consensus 22 ~C~~C~Y~ 29 (35)
T PF02150_consen 22 ACRTCGYE 29 (35)
T ss_dssp EESSSS-E
T ss_pred CCCCCCCc
Confidence 79999985
No 284
>PF13602 ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQH_A 2VN8_A 3GOH_A 4A27_A.
Probab=22.76 E-value=35 Score=26.17 Aligned_cols=36 Identities=25% Similarity=0.512 Sum_probs=23.5
Q ss_pred CCCceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEe
Q 024162 51 ESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYK 90 (271)
Q Consensus 51 ~~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~ 90 (271)
..+.||+|+-... -..+.++..+.++| |||+++...
T Consensus 16 ~~~~~D~ViD~~g---~~~~~~~~~~~~~l-~~G~~v~i~ 51 (127)
T PF13602_consen 16 GPGGVDVVIDTVG---QTGESLLDASRKLL-PGGRVVSIG 51 (127)
T ss_dssp TTS-EEEEEESS----CCHHHCGGGCCCTE-EEEEEEEE-
T ss_pred CCCCceEEEECCC---CccHHHHHHHHHHC-CCCEEEEEC
Confidence 4678999997654 11345557788899 999985543
No 285
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=22.68 E-value=2.6e+02 Score=25.50 Aligned_cols=33 Identities=12% Similarity=0.173 Sum_probs=25.0
Q ss_pred ceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEec
Q 024162 54 SIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKK 91 (271)
Q Consensus 54 sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~ 91 (271)
.||+|+-... ....+....+.|++||++++.-.
T Consensus 235 ~~D~vid~~G-----~~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 235 YFDVSFEVSG-----HPSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred CCCEEEECCC-----CHHHHHHHHHHhhcCCEEEEEcc
Confidence 4888876532 24567889999999999988754
No 286
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=22.58 E-value=71 Score=32.33 Aligned_cols=57 Identities=16% Similarity=0.191 Sum_probs=42.9
Q ss_pred CCCCeEEEeccCCCCCCCCCceeEEEeccccccCC----hHHHHHHHHHhccCCcEEEEEec
Q 024162 34 CDPQIITQASSLSQLPVESFSIDTVLSISSSHELP----GDQLLEEISRVLKPGGTILIYKK 91 (271)
Q Consensus 34 ~~~~v~~~~~d~e~lp~~~~sfD~V~s~~~l~~~~----~~~~L~ei~RvLKPGG~l~i~~~ 91 (271)
+..+|+.+..|+...+-+....|++++-.. -.+. .++.|.-+.+.|||.|+.+=+..
T Consensus 419 W~~~Vtii~~DMR~w~ap~eq~DI~VSELL-GSFGDNELSPECLDG~q~fLkpdgIsIP~sY 479 (649)
T KOG0822|consen 419 WDNRVTIISSDMRKWNAPREQADIIVSELL-GSFGDNELSPECLDGAQKFLKPDGISIPSSY 479 (649)
T ss_pred hcCeeEEEeccccccCCchhhccchHHHhh-ccccCccCCHHHHHHHHhhcCCCceEccchh
Confidence 456788899999998855688999988431 1222 28899999999999988875443
No 287
>TIGR02175 PorC_KorC 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes the gamma subunit. In Pyrococcus furious, enzymes active on pyruvate and 2-ketoisovalerate share a common gamma subunit.
Probab=22.16 E-value=1.6e+02 Score=24.57 Aligned_cols=33 Identities=21% Similarity=0.427 Sum_probs=22.8
Q ss_pred CCCceeEEEeccccccCChHHHHHH--HHHhccCCcEEEEEe
Q 024162 51 ESFSIDTVLSISSSHELPGDQLLEE--ISRVLKPGGTILIYK 90 (271)
Q Consensus 51 ~~~sfD~V~s~~~l~~~~~~~~L~e--i~RvLKPGG~l~i~~ 90 (271)
+-...|++++.. +.++.. ..+-|+|||.+++-.
T Consensus 63 ~~~~~D~lva~~-------~~~~~~~~~~~~l~~gg~ii~d~ 97 (177)
T TIGR02175 63 QIYEPDYVVVLD-------PTLLKTVNVTAGLKEDGILIVNT 97 (177)
T ss_pred ccCCCCEEEEcC-------HHHhCccchhhCcCCCeEEEEEC
Confidence 455789988864 233332 567799999998764
No 288
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=21.73 E-value=5.9e+02 Score=23.83 Aligned_cols=46 Identities=20% Similarity=0.137 Sum_probs=30.0
Q ss_pred CCCCCCCceeEEEeccccccCCh---------------------------HHHHHHHHHhccCCcEEEEEecC
Q 024162 47 QLPVESFSIDTVLSISSSHELPG---------------------------DQLLEEISRVLKPGGTILIYKKL 92 (271)
Q Consensus 47 ~lp~~~~sfD~V~s~~~l~~~~~---------------------------~~~L~ei~RvLKPGG~l~i~~~~ 92 (271)
..+...+.+|+++++-.+-.-.+ -.++.-.-|.|+|||.+.+....
T Consensus 215 ~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~ 287 (328)
T KOG2904|consen 215 EHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVE 287 (328)
T ss_pred ccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEecc
Confidence 34566889999999642100000 22345567999999999988764
No 289
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=21.72 E-value=2.1e+02 Score=23.94 Aligned_cols=73 Identities=14% Similarity=0.115 Sum_probs=45.0
Q ss_pred EEEEecCC--cccHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCC-CCceeEEEeccccccCCh---HHHHHHHHH
Q 024162 5 VLALSEDK--ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVE-SFSIDTVLSISSSHELPG---DQLLEEISR 78 (271)
Q Consensus 5 vl~~td~~--~~~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~-~~sfD~V~s~~~l~~~~~---~~~L~ei~R 78 (271)
.+++.|.. ...|.++-+.+.+....+ ...+.|+.|-..-++-. -...|.+++...+.+-+. --++.++||
T Consensus 69 ~~i~LDe~Gk~~sS~~fA~~l~~~~~~g----~~~i~F~IGGa~G~~~~v~~~a~~~lSLS~mTfpH~larlvL~EQlYR 144 (157)
T PRK00103 69 RVIALDERGKQLSSEEFAQELERWRDDG----RSDVAFVIGGADGLSPAVKKRADQSLSLSKLTLPHQLVRVLLAEQLYR 144 (157)
T ss_pred EEEEEcCCCCcCCHHHHHHHHHHHHhcC----CccEEEEEcCccccCHHHHHhcCceEEeccCCCcHHHHHHHHHHHHHH
Confidence 34445544 556999988888764322 13688998876544311 124677777666555554 556778888
Q ss_pred hcc
Q 024162 79 VLK 81 (271)
Q Consensus 79 vLK 81 (271)
+.+
T Consensus 145 a~t 147 (157)
T PRK00103 145 AWS 147 (157)
T ss_pred HHH
Confidence 753
No 290
>PRK06490 glutamine amidotransferase; Provisional
Probab=21.66 E-value=4.1e+02 Score=23.47 Aligned_cols=54 Identities=13% Similarity=0.099 Sum_probs=34.4
Q ss_pred CccEEEEecCCcccHHHHHHHHHHhCchhhhcCCCCeEEEeccCC-CCCCCCCceeEEEeccc
Q 024162 2 QSAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLS-QLPVESFSIDTVLSISS 63 (271)
Q Consensus 2 ~~~vl~~td~~~~~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e-~lp~~~~sfD~V~s~~~ 63 (271)
+.+||++.+........+.++.++.+ ..+.+...... .+|-.-..||.|+..-.
T Consensus 7 ~~~vlvi~h~~~~~~g~l~~~l~~~g--------~~~~v~~~~~~~~~p~~l~~~dgvii~Gg 61 (239)
T PRK06490 7 KRPVLIVLHQERSTPGRVGQLLQERG--------YPLDIRRPRLGDPLPDTLEDHAGAVIFGG 61 (239)
T ss_pred CceEEEEecCCCCCChHHHHHHHHCC--------CceEEEeccCCCCCCCcccccCEEEEECC
Confidence 45789999998888888888888765 23333322222 34433457998776443
No 291
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=21.29 E-value=1.4e+02 Score=28.71 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=19.9
Q ss_pred HHHHHHHHHhccCCcEEEEEecCC
Q 024162 70 DQLLEEISRVLKPGGTILIYKKLT 93 (271)
Q Consensus 70 ~~~L~ei~RvLKPGG~l~i~~~~~ 93 (271)
-.+|..-.|.||+||+|+.++-+-
T Consensus 276 ~~iL~rgl~lLk~GG~lVYSTCSL 299 (375)
T KOG2198|consen 276 LRILRRGLRLLKVGGRLVYSTCSL 299 (375)
T ss_pred HHHHHHHHHHhcCCCEEEEeccCC
Confidence 356778899999999999998653
No 292
>PF12511 DUF3716: Protein of unknown function (DUF3716) ; InterPro: IPR022190 This domain family is found in eukaryotes, and is approximately 60 amino acids in length.
Probab=21.14 E-value=43 Score=23.13 Aligned_cols=17 Identities=29% Similarity=0.667 Sum_probs=12.0
Q ss_pred CCCCCCCCCCCCcc-ccC
Q 024162 228 PQSACGSCGLGDAF-RCG 244 (271)
Q Consensus 228 ~~s~cg~c~lgdaf-rc~ 244 (271)
...+|+||+..+-= ||+
T Consensus 40 ~~gaCaNC~~~~~~~~CS 57 (60)
T PF12511_consen 40 FNGACANCKWNGQGSRCS 57 (60)
T ss_pred cCCcccCceeCCCCCcCc
Confidence 47899999877643 443
No 293
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=21.02 E-value=6.9e+02 Score=23.34 Aligned_cols=79 Identities=11% Similarity=0.208 Sum_probs=49.9
Q ss_pred CCCCeEEEeccCCCCCCC--CCceeEEEeccccccCChHHHHHHHHHhccCCcE-EEEEecCCCCcccHHHHHHHHHHHH
Q 024162 34 CDPQIITQASSLSQLPVE--SFSIDTVLSISSSHELPGDQLLEEISRVLKPGGT-ILIYKKLTSDKGDVDKAISALEGKL 110 (271)
Q Consensus 34 ~~~~v~~~~~d~e~lp~~--~~sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~-l~i~~~~~~~~~e~~~~~~~l~~~l 110 (271)
...++.+.+-|+...-|. +..+|+|+.-..- +..++..++.+||.+|. |.-..+- +.. .+.-...|
T Consensus 155 i~~~vt~~hrDVc~~GF~~ks~~aDaVFLDlPa----Pw~AiPha~~~lk~~g~r~csFSPC------IEQ-vqrtce~l 223 (314)
T KOG2915|consen 155 IGDNVTVTHRDVCGSGFLIKSLKADAVFLDLPA----PWEAIPHAAKILKDEGGRLCSFSPC------IEQ-VQRTCEAL 223 (314)
T ss_pred CCcceEEEEeecccCCccccccccceEEEcCCC----hhhhhhhhHHHhhhcCceEEeccHH------HHH-HHHHHHHH
Confidence 446778888888776654 5678999874322 24577888889998884 4322211 211 11233457
Q ss_pred HHcCCcchhhhhh
Q 024162 111 LLAGFLDAQRIQL 123 (271)
Q Consensus 111 ~laGF~~v~~~~~ 123 (271)
...||++++.++.
T Consensus 224 ~~~gf~~i~~vEv 236 (314)
T KOG2915|consen 224 RSLGFIEIETVEV 236 (314)
T ss_pred HhCCCceEEEEEe
Confidence 7789999877754
No 294
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=20.83 E-value=1.5e+02 Score=26.87 Aligned_cols=76 Identities=16% Similarity=0.160 Sum_probs=40.3
Q ss_pred EEeccCCCCC-CC-CCceeEEEeccccccC------------------C--h--HHHHHHHHHhccCCcEEEEEecCCCC
Q 024162 40 TQASSLSQLP-VE-SFSIDTVLSISSSHEL------------------P--G--DQLLEEISRVLKPGGTILIYKKLTSD 95 (271)
Q Consensus 40 ~~~~d~e~lp-~~-~~sfD~V~s~~~l~~~------------------~--~--~~~L~ei~RvLKPGG~l~i~~~~~~~ 95 (271)
...++.-..+ +. ...||+|+++-.+... . . -.++..+.+.||+||++.+..+.. .
T Consensus 109 i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~-~ 187 (311)
T PF02384_consen 109 IIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNG-F 187 (311)
T ss_dssp EEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHH-H
T ss_pred ccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecch-h
Confidence 4455543333 32 5789999995422111 0 1 358899999999999998777541 0
Q ss_pred cccHHHHHHHHHHHHHHcCCcc
Q 024162 96 KGDVDKAISALEGKLLLAGFLD 117 (271)
Q Consensus 96 ~~e~~~~~~~l~~~l~laGF~~ 117 (271)
+.. ......+++.|...+.+.
T Consensus 188 L~~-~~~~~~iR~~ll~~~~i~ 208 (311)
T PF02384_consen 188 LFS-SSSEKKIRKYLLENGYIE 208 (311)
T ss_dssp HHG-STHHHHHHHHHHHHEEEE
T ss_pred hhc-cchHHHHHHHHHhhchhh
Confidence 000 001235566666555543
No 295
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=20.80 E-value=1.6e+02 Score=27.84 Aligned_cols=33 Identities=21% Similarity=0.345 Sum_probs=26.6
Q ss_pred ceeEEEeccccccCChHHHHHHHHHhccCCcEEEEEecC
Q 024162 54 SIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKL 92 (271)
Q Consensus 54 sfD~V~s~~~l~~~~~~~~L~ei~RvLKPGG~l~i~~~~ 92 (271)
.||+|+.... ...+....+.||+||++++.-..
T Consensus 229 ~~d~ii~tv~------~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 229 IADAIIDTVG------PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred hCcEEEECCC------hhhHHHHHHHHhcCCEEEEECCC
Confidence 3999998653 45678899999999999988654
No 296
>TIGR03601 B_an_ocin probable heterocycle-containing bacteriocin, BA_2677 family. Numerous bacteria encode systems for producing bacteriocins by extensive modification of ribosomally produced precursors. These proteins are recognizable in part by proximity to the modification proteins, and in part by small size, with leader peptide-like N-terminal sequence followed by low-complexity sequence rich in Cys, Gly, and/or Ser. This protein family represents a probable member of the class, though previously unrecognized because it is not encoded adjacent to its modification proteins.
Probab=20.69 E-value=64 Score=23.45 Aligned_cols=6 Identities=67% Similarity=1.553 Sum_probs=2.4
Q ss_pred cccCCC
Q 024162 241 FRCGTC 246 (271)
Q Consensus 241 frc~~c 246 (271)
|||.+|
T Consensus 60 ~rCgGC 65 (79)
T TIGR03601 60 GRCGGC 65 (79)
T ss_pred ccccCc
Confidence 344333
No 297
>smart00259 ZnF_A20 A20-like zinc fingers. A20- (an inhibitor of cell death)-like zinc fingers. The zinc finger mediates self-association in A20. These fingers also mediate IL-1-induced NF-kappaB activation.
Probab=20.59 E-value=55 Score=19.05 Aligned_cols=14 Identities=29% Similarity=0.816 Sum_probs=11.9
Q ss_pred ccC--CCCCCCCCCCC
Q 024162 242 RCG--TCPYKGLPPFK 255 (271)
Q Consensus 242 rc~--~cpy~g~pafk 255 (271)
+|. +|.|-|-|+++
T Consensus 3 ~C~~~~CgF~G~~~t~ 18 (26)
T smart00259 3 KCRRPGCGFFGNPATE 18 (26)
T ss_pred ccccCCCCCcCChhhc
Confidence 577 99999999975
No 298
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=20.19 E-value=5.8e+02 Score=22.12 Aligned_cols=101 Identities=13% Similarity=0.057 Sum_probs=59.6
Q ss_pred cEEEEecCCcccHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCc-eeEEEeccccccCChHHHHHHHHHhccC
Q 024162 4 AVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFS-IDTVLSISSSHELPGDQLLEEISRVLKP 82 (271)
Q Consensus 4 ~vl~~td~~~~~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~s-fD~V~s~~~l~~~~~~~~L~ei~RvLKP 82 (271)
...+++|...-|.....+.++... ...+|....+|.-. +++.+. .|.|+..-+-- ..-.+.|.+....++.
T Consensus 22 ~~~ia~DI~~gpL~~A~~~i~~~~------l~~~i~~rlgdGL~-~l~~~e~~d~ivIAGMGG-~lI~~ILe~~~~~~~~ 93 (205)
T PF04816_consen 22 PKAIAVDINPGPLEKAKENIAKYG------LEDRIEVRLGDGLE-VLKPGEDVDTIVIAGMGG-ELIIEILEAGPEKLSS 93 (205)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHTT-------TTTEEEEE-SGGG-G--GGG---EEEEEEE-H-HHHHHHHHHTGGGGTT
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcC------CcccEEEEECCccc-ccCCCCCCCEEEEecCCH-HHHHHHHHhhHHHhcc
Confidence 346778888878777766666553 12468888888533 233333 68776532100 0015667777777777
Q ss_pred CcEEEEEecCCCCcccHHHHHHHHHHHHHHcCCcchhhh
Q 024162 83 GGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRI 121 (271)
Q Consensus 83 GG~l~i~~~~~~~~~e~~~~~~~l~~~l~laGF~~v~~~ 121 (271)
.-+|+++.... ...+++.|..+||.-+...
T Consensus 94 ~~~lILqP~~~---------~~~LR~~L~~~gf~I~~E~ 123 (205)
T PF04816_consen 94 AKRLILQPNTH---------AYELRRWLYENGFEIIDED 123 (205)
T ss_dssp --EEEEEESS----------HHHHHHHHHHTTEEEEEEE
T ss_pred CCeEEEeCCCC---------hHHHHHHHHHCCCEEEEeE
Confidence 77888887651 1267889999999876654
No 299
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=20.02 E-value=2.9e+02 Score=20.11 Aligned_cols=52 Identities=13% Similarity=0.176 Sum_probs=30.5
Q ss_pred cEEEEecCCcccHHHHHHHHHHhCchhhhcCCCCeEEEeccCCCCCCCCCceeEEEecc
Q 024162 4 AVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSIS 62 (271)
Q Consensus 4 ~vl~~td~~~~~s~~mv~~ar~~~~~~~~~~~~~v~~~~~d~e~lp~~~~sfD~V~s~~ 62 (271)
.|+++-....-.|.-+...+++... ..+........++..+. +.+|+|++..
T Consensus 2 kilvvCg~G~gtS~ml~~ki~~~~~----~~~~~~~v~~~~~~~~~---~~~Dliitt~ 53 (87)
T cd05567 2 KIVFACDAGMGSSAMGASVLRKKLK----KAGLEIPVTNSAIDELP---SDADLVVTHA 53 (87)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHH----HCCCceEEEEcchhhCC---CCCCEEEECh
Confidence 3566665554444444666666532 12244555666676665 6799999975
No 300
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=20.01 E-value=1.2e+02 Score=27.38 Aligned_cols=57 Identities=19% Similarity=0.164 Sum_probs=34.7
Q ss_pred CCCeEEEeccCC-CCC-CCCCceeEEEeccccccCC-hHHHHHHHHHhccCCcEEEEEecCC
Q 024162 35 DPQIITQASSLS-QLP-VESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYKKLT 93 (271)
Q Consensus 35 ~~~v~~~~~d~e-~lp-~~~~sfD~V~s~~~l~~~~-~~~~L~ei~RvLKPGG~l~i~~~~~ 93 (271)
..++.++.|... .+| .+...+-++.. -.-+.. ...+|..++..|.|||.+++-++..
T Consensus 156 ~~~v~~vkG~F~dTLp~~p~~~IAll~l--D~DlYesT~~aLe~lyprl~~GGiIi~DDY~~ 215 (248)
T PF05711_consen 156 DDNVRFVKGWFPDTLPDAPIERIALLHL--DCDLYESTKDALEFLYPRLSPGGIIIFDDYGH 215 (248)
T ss_dssp STTEEEEES-HHHHCCC-TT--EEEEEE-----SHHHHHHHHHHHGGGEEEEEEEEESSTTT
T ss_pred cccEEEECCcchhhhccCCCccEEEEEE--eccchHHHHHHHHHHHhhcCCCeEEEEeCCCC
Confidence 357899999874 344 22333322222 111222 2789999999999999999999873
Done!