Query 024163
Match_columns 271
No_of_seqs 120 out of 130
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 03:28:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024163.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024163hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3arc_O Photosystem II manganes 100.0 4E-125 1E-129 845.8 21.7 232 37-271 1-242 (243)
2 3szh_A Avidin/streptavidin; hi 47.9 23 0.00078 29.1 4.6 39 224-267 20-58 (122)
3 2y32_A BLR5658 protein, bradav 36.6 27 0.00093 29.1 3.4 39 224-266 14-52 (138)
4 2c1s_A Biotin binding protein 35.3 22 0.00074 29.1 2.6 22 224-246 18-39 (126)
5 3s8i_A Protein DDI1 homolog 1; 24.1 21 0.00071 29.0 0.6 19 132-150 123-142 (148)
6 3sqr_A Laccase; multicopper ox 22.5 2.5E+02 0.0087 27.4 8.1 34 122-155 283-319 (580)
7 2o3b_B Endonuclease, sugar-non 20.0 95 0.0033 25.7 3.8 33 208-241 95-130 (136)
8 3ckm_A YRAM (HI1655), LPOA; pe 17.9 1.1E+02 0.0037 25.9 3.8 35 106-148 284-318 (327)
9 3t6v_A Laccase; beta barrel, o 16.4 4.8E+02 0.016 24.7 8.3 34 122-155 219-255 (495)
10 2r39_A FIXG-related protein; s 14.9 2.8E+02 0.0094 21.0 5.2 26 130-155 72-101 (118)
No 1
>3arc_O Photosystem II manganese-stabilizing polypeptide; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_O* 2axt_O* 3bz2_O* 3prq_O* 3prr_O* 1s5l_O* 3kzi_O* 3a0b_O* 3a0h_O*
Probab=100.00 E-value=3.8e-125 Score=845.81 Aligned_cols=232 Identities=52% Similarity=0.902 Sum_probs=224.5
Q ss_pred ccceeeeeceeecCCCCCcCCCCcc-eeecCC-ceeeeecccccceEEEEeeecCCCCCCccccceeeeeeeeeeeeeee
Q 024163 37 SKTYMEVKGTGTANQCPTIDGGVDS-FAFKPG-KYQAKKFCLEPTSFTVKAESVNKNAPPDFQNTKLMTRLTYTLDEIEG 114 (271)
Q Consensus 37 ~ltY~qvkgTGlAN~CP~l~~~~~~-i~l~~g-~Y~l~~lClEPtsf~VkeE~~~k~~~~eFv~tKLmTR~TyTLd~I~G 114 (271)
+|||+||||||+||+||+|++++++ |+|++| +|+|++||||||+|+||||+++||+++|||+||||||+|||||||+|
T Consensus 1 ~ltY~~vkgTGlAN~CP~l~~~~~g~i~l~~~g~y~~~~~ClePtsf~Vkee~~~k~~~~eFv~tKlmTR~TyTLd~i~G 80 (243)
T 3arc_O 1 TLTYDDIVGTGLANKCPTLDDTARGAYPIDSSQTYRIARLCLQPTTFLVKEEPKNKRQEAEFVPTKLVTRETTSLDQIQG 80 (243)
T ss_dssp CCCHHHHTTSSGGGSCCCCCTTCBCCEECCTTSCEEEEEEEEEEEEEEEECCCCSSCSCCCEEECEECSCSCCCEEEEEE
T ss_pred CCchhheeceeecccCCCCCCCCCCceeeCCCCceEeeeeccCCcEEEEEeeccCCCCcccceeeeEEEeeeeeehheeE
Confidence 3666679999999999999988877 899885 99999999999999999999999999999999999999999999999
Q ss_pred eeEeCCCCCeeEEEecCeeeeeeEEecCCCceeeeEEEecceeeccCC--------cccceeeeccccCCCCCCCCCCCC
Q 024163 115 PFEVSPDGTIKFVEKDGIDYAAVTVQLPGGERVPFLFTIKQLVASGKP--------ENFGGEFLVPSYRGSSFLDPKGRG 186 (271)
Q Consensus 115 ~l~v~~dG~ltf~E~dGiDfa~iTVqlPGGErVPFLFTvK~L~A~~~~--------~~F~G~F~VPSYRgs~FLDPKGRG 186 (271)
+|+|++||+|+|+|+|||||||||||||||||||||||||+|+|++++ +.|+|+|+|||||||+||||||||
T Consensus 81 ~l~v~~dG~l~f~E~dGiDfa~~TVqlPGGErVPFlFTvK~LvA~~~~~~~si~~s~~f~G~f~VPSYRgs~FLDPKGRG 160 (243)
T 3arc_O 81 ELKVNSDGSLTFVEEDGIDFQPVTVQMAGGERIPLLFTVKNLVASTQPNVTSITTSTDFKGEFNVPSYRTANFLDPKGRG 160 (243)
T ss_dssp EEEECTTSCEEEEEEEEECEEEEEEECTTSCEEEEEEECTTCEEECCSCCSEECTTCEEEEEEEEECSSCTTCCCTTSBC
T ss_pred EEEECCCCceEEEEecCeecceEEEEcCCCcccceEeeehhheeeccccccccccccccceeEeccccccccccCCCcCC
Confidence 999999999999999999999999999999999999999999999986 569999999999999999999999
Q ss_pred CCcccccceeccCCCCCChhHHhhhhcccccccceEEEEEEEeecCCCCeeeEEEeEeCCCCCCCCCCCCcceEEEEEEE
Q 024163 187 GSTGYDNAIALPAGGRGDEEDLAKENIKNTSSSTGKITLSVTKSKPETGEVIGVFESLQPSDTDMGAKVPKDVKIQGIWY 266 (271)
Q Consensus 187 ~sTGYD~AvaLpa~g~~d~eeL~kEN~K~~~~~~G~i~l~V~kVd~~TGEiaGvF~S~QpSDTDmGak~PkdVki~GifY 266 (271)
++||||||||||| + |+|||+|||+|++++++|+|+|+|+|||++||||||||+|+||||||||||+||||||+|+||
T Consensus 161 ~~tGYD~AvaLpA-~--d~eel~keN~K~~~~~~G~i~l~V~kvd~~TGEiaGvF~s~QpSDTDlGak~pkdVki~G~~Y 237 (243)
T 3arc_O 161 LASGYDSAIALPQ-A--KEEELARANVKRFSLTKGQISLNVAKVDGRTGEIAGTFESEQLSDDDMGAHEPHEVKIQGVFY 237 (243)
T ss_dssp SSSSBSSCTTSTT-S--CSGGGHHHHSCCCCEEEEEEEEEEEEEETTTTEEEEEEEEEEECCCTTTTSCCCEEEEEEEEE
T ss_pred CCcccccceeccc-C--ChHHHhhhhccccccccceEEEEEEeeCCCCceEEEEEEeeCCCCcccCCCCCceEEEEEEEE
Confidence 9999999999999 3 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecC
Q 024163 267 AQLEQ 271 (271)
Q Consensus 267 grl~~ 271 (271)
|||++
T Consensus 238 ~rl~~ 242 (243)
T 3arc_O 238 ASIEP 242 (243)
T ss_dssp EEEEE
T ss_pred EEecC
Confidence 99974
No 2
>3szh_A Avidin/streptavidin; high affinity systems, biotin, shwanav biotin-binding protein; 1.07A {Shewanella denitrificans} PDB: 3szi_A 3szj_A* 3t2x_A 3t2w_A
Probab=47.94 E-value=23 Score=29.08 Aligned_cols=39 Identities=18% Similarity=0.260 Sum_probs=26.9
Q ss_pred EEEEEeecCCCCeeeEEEeEeCCCCCCCCCCCCcceEEEEEEEE
Q 024163 224 TLSVTKSKPETGEVIGVFESLQPSDTDMGAKVPKDVKIQGIWYA 267 (271)
Q Consensus 224 ~l~V~kVd~~TGEiaGvF~S~QpSDTDmGak~PkdVki~GifYg 267 (271)
+|.|..||. .|+|.|.|.+-=. |+ +....+.-|.|.++|
T Consensus 20 ~m~I~~~~~-~G~itGtY~Tav~-~s---~~~g~~~Pl~G~~~g 58 (122)
T 3szh_A 20 TLYINSINA-QGELTGSYINRAA-GF---ACQNSPYPVNGWVFG 58 (122)
T ss_dssp EEEEEEECT-TCEEEEEEEBCCT-TC---SSBSSCEEEEEEEET
T ss_pred EEEEEEeCC-CCEEEEEEEcccC-CC---CCCCCeeeeEEEecC
Confidence 477888885 9999999998743 44 223333448888764
No 3
>2y32_A BLR5658 protein, bradavidin; biotin-binding protein; 1.78A {Bradyrhizobium japonicum}
Probab=36.63 E-value=27 Score=29.10 Aligned_cols=39 Identities=21% Similarity=0.300 Sum_probs=28.9
Q ss_pred EEEEEeecCCCCeeeEEEeEeCCCCCCCCCCCCcceEEEEEEE
Q 024163 224 TLSVTKSKPETGEVIGVFESLQPSDTDMGAKVPKDVKIQGIWY 266 (271)
Q Consensus 224 ~l~V~kVd~~TGEiaGvF~S~QpSDTDmGak~PkdVki~GifY 266 (271)
.|.|..||..+|+|.|.|.+-=.+ +- .....-.|.|.++
T Consensus 14 ~mtI~av~~~~G~itGtY~Tav~~-s~---~~~~~~pl~G~~~ 52 (138)
T 2y32_A 14 TLAITSFNSNTGAITGTYTNNAAN-SC---DEGKPQGVTGWLA 52 (138)
T ss_dssp EEEEEEECTTTCEEEEEEECCCTT-CT---TTTCCEEEEEEEE
T ss_pred EEEEEEccCCCCEEEEEEeccccc-cC---CCCCCcceEEEee
Confidence 588999999999999999987443 31 2334457888877
No 4
>2c1s_A Biotin binding protein A; HET: BSO; 1.75A {Gallus gallus} PDB: 2c1q_A*
Probab=35.28 E-value=22 Score=29.14 Aligned_cols=22 Identities=9% Similarity=0.338 Sum_probs=18.9
Q ss_pred EEEEEeecCCCCeeeEEEeEeCC
Q 024163 224 TLSVTKSKPETGEVIGVFESLQP 246 (271)
Q Consensus 224 ~l~V~kVd~~TGEiaGvF~S~Qp 246 (271)
.|.|.+|| ++|+|.|.|.+-=.
T Consensus 18 ~mtI~~v~-~~G~itG~Y~Tav~ 39 (126)
T 2c1s_A 18 NMTISALD-VAGTFSGSYQTAVT 39 (126)
T ss_dssp EEEECCCC-TTSEEEEEEECSCC
T ss_pred EEEEEEeC-CCCEEEEEEECCcc
Confidence 58899999 99999999987544
No 5
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens}
Probab=24.12 E-value=21 Score=28.97 Aligned_cols=19 Identities=26% Similarity=0.387 Sum_probs=16.6
Q ss_pred eeeeeeEEecCC-CceeeeE
Q 024163 132 IDYAAVTVQLPG-GERVPFL 150 (271)
Q Consensus 132 iDfa~iTVqlPG-GErVPFL 150 (271)
|||+--++.+.. ||+||||
T Consensus 123 ID~~~~~L~l~~~~~~~pfl 142 (148)
T 3s8i_A 123 IDLKKNVLVIGTTGTQTYFL 142 (148)
T ss_dssp EETTTTEEECTTTCCEEECC
T ss_pred EEcCCCEEEEccCCeEEeec
Confidence 789998999975 6999997
No 6
>3sqr_A Laccase; multicopper oxidase, glycosylation, oxidoreductase; HET: NAG BMA MAN; 1.67A {Botrytis aclada}
Probab=22.54 E-value=2.5e+02 Score=27.44 Aligned_cols=34 Identities=15% Similarity=0.223 Sum_probs=27.8
Q ss_pred CCeeEEEecCeeeeeeE---EecCCCceeeeEEEecc
Q 024163 122 GTIKFVEKDGIDYAAVT---VQLPGGERVPFLFTIKQ 155 (271)
Q Consensus 122 G~ltf~E~dGiDfa~iT---VqlPGGErVPFLFTvK~ 155 (271)
-.++..+.||..-+|.+ ++|.-|||.=+|++.++
T Consensus 283 h~~~VIa~DG~~v~P~~~~~l~i~pGqRydVlv~a~~ 319 (580)
T 3sqr_A 283 HTLTVIANDLVPIVPYTTDTLLIGIGQRYDVIVEANA 319 (580)
T ss_dssp CCEEEEEETTEEEEEEEESSEEECTTCEEEEEEECCS
T ss_pred ceEEEEEeCCccCCceEeeEEEEccceEEEEEEEeCC
Confidence 35777888998877775 46899999999999875
No 7
>2o3b_B Endonuclease, sugar-non-specific nuclease inhibitor; metal complex, non-specific NU hydrolase-hydrolase inhibitor complex; HET: MES; 2.30A {Nostoc SP} SCOP: d.221.1.1 PDB: 1j57_A 1ktu_A
Probab=19.96 E-value=95 Score=25.72 Aligned_cols=33 Identities=18% Similarity=0.270 Sum_probs=28.4
Q ss_pred Hhhhh---cccccccceEEEEEEEeecCCCCeeeEEE
Q 024163 208 LAKEN---IKNTSSSTGKITLSVTKSKPETGEVIGVF 241 (271)
Q Consensus 208 L~kEN---~K~~~~~~G~i~l~V~kVd~~TGEiaGvF 241 (271)
..|+| +|+|.++.-+|..=|--.+++ |+++|+-
T Consensus 95 ~lk~~l~evkVYRVg~~~ve~yIlG~~~~-G~lvGl~ 130 (136)
T 2o3b_B 95 VIKSNLKNPQVYRLGEVELDVYVIGETPA-GNLAGIS 130 (136)
T ss_dssp HHHHHSEEEEEEEESSSEEEEEEEEECTT-SCEEEEE
T ss_pred HHHHhcccceEEEECCEEEEEEEEEecCC-CCEEEEE
Confidence 44666 899999999999999999999 9999975
No 8
>3ckm_A YRAM (HI1655), LPOA; periplasmic-binding protein, lipoprotein, unliganded, biosynthetic protein; 1.35A {Haemophilus influenzae} SCOP: c.93.1.1
Probab=17.87 E-value=1.1e+02 Score=25.93 Aligned_cols=35 Identities=20% Similarity=0.337 Sum_probs=23.1
Q ss_pred eeeeeeeeeeeEeCCCCCeeEEEecCeeeeeeEEecCCCceee
Q 024163 106 TYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLPGGERVP 148 (271)
Q Consensus 106 TyTLd~I~G~l~v~~dG~ltf~E~dGiDfa~iTVqlPGGErVP 148 (271)
.+.++++.|.|+++++|.+. -+..=.|.-+|.-||
T Consensus 284 ~~~f~G~tG~i~fd~~G~~~--------r~l~~~~~~~G~~vp 318 (327)
T 3ckm_A 284 GYRLSGLTGILSADTNCNVE--------RDMTWYQYQDGAIVP 318 (327)
T ss_dssp TCCEEETTEEEEECTTCBEE--------EECEEEEEETTEEEE
T ss_pred CCCceeceEEEEECCCCCCc--------cccEEEEEECCEEEE
Confidence 45678899999999998642 122223444777776
No 9
>3t6v_A Laccase; beta barrel, oxidoreductase; HET: CBS; 2.00A {Steccherinum ochraceum} PDB: 3t6w_A* 3t6x_A* 3t6z_A* 3t71_A*
Probab=16.44 E-value=4.8e+02 Score=24.66 Aligned_cols=34 Identities=26% Similarity=0.548 Sum_probs=27.3
Q ss_pred CCeeEEEecCeeeeeeE---EecCCCceeeeEEEecc
Q 024163 122 GTIKFVEKDGIDYAAVT---VQLPGGERVPFLFTIKQ 155 (271)
Q Consensus 122 G~ltf~E~dGiDfa~iT---VqlPGGErVPFLFTvK~ 155 (271)
-.++..+.||..-+|.+ ++|.-|||.=+|++.++
T Consensus 219 h~~~via~DG~~~~P~~~~~l~i~pGqR~dvlv~~~~ 255 (495)
T 3t6v_A 219 HDMTIIETDGVDSQELTVDEIQIFAAQRYSFVLNANQ 255 (495)
T ss_dssp CCEEEEEETTEEEEEEEESBEEECTTCEEEEEEECCS
T ss_pred CeEEEEEeCCcccCCEEeeeEEEcCceEEEEEEECCC
Confidence 46777888887777764 57999999999998864
No 10
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus}
Probab=14.86 E-value=2.8e+02 Score=20.98 Aligned_cols=26 Identities=4% Similarity=0.068 Sum_probs=17.8
Q ss_pred cCeeeeeeEEecCCCc----eeeeEEEecc
Q 024163 130 DGIDYAAVTVQLPGGE----RVPFLFTIKQ 155 (271)
Q Consensus 130 dGiDfa~iTVqlPGGE----rVPFLFTvK~ 155 (271)
+..--.++.|.+|... .-|+-|.|++
T Consensus 72 g~~~~~~v~v~~~~~~~~~~~~~i~f~v~~ 101 (118)
T 2r39_A 72 GEVLNLPMSLGADPDKLNSAITTIQFILTD 101 (118)
T ss_dssp TCEEEEEEEEEECGGGCSSSEEEEEEEEEE
T ss_pred CCEEEEEEEEEEChHHccCCceeEEEEEEe
Confidence 3345567888776643 5788888874
Done!