Your job contains 1 sequence.
>024165
MRPEDIDHYMSFQFQCMFFGLFKNIAVIRQSTWAWDNLWHFLYCLPVYMLFILQRGPAFI
SELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAH
FKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTF
HNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLV
SLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 024165
(271 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2116992 - symbol:MEE49 "AT4G01560" species:370... 922 1.5e-92 1
UNIPROTKB|A4FUG9 - symbol:BXDC5 "Uncharacterized protein"... 446 1.6e-59 2
UNIPROTKB|Q9H9Y2 - symbol:RPF1 "Ribosome production facto... 446 1.6e-59 2
UNIPROTKB|Q5R631 - symbol:RPF1 "Ribosome production facto... 446 1.6e-59 2
UNIPROTKB|E2RLN4 - symbol:RPF1 "Uncharacterized protein" ... 444 2.6e-59 2
UNIPROTKB|I3LN44 - symbol:RPF1 "Uncharacterized protein" ... 441 5.4e-59 2
MGI|MGI:1917535 - symbol:Rpf1 "ribosome production factor... 441 5.4e-59 2
UNIPROTKB|F1NRK2 - symbol:RPF1 "Uncharacterized protein" ... 443 3.8e-58 2
UNIPROTKB|Q8AVP1 - symbol:rpf1 "Ribosome production facto... 430 6.9e-57 2
ZFIN|ZDB-GENE-040625-177 - symbol:rpf1 "ribosome producti... 423 2.0e-55 2
WB|WBGene00009711 - symbol:F44G4.1 species:6239 "Caenorha... 429 8.8e-55 2
RGD|1559755 - symbol:Rpf1 "ribosome production factor 1 h... 441 2.3e-54 2
FB|FBgn0032408 - symbol:CG6712 species:7227 "Drosophila m... 407 5.4e-51 2
DICTYBASE|DDB_G0285829 - symbol:bxdc5 "brix domain-contai... 391 6.0e-48 2
SGD|S000001130 - symbol:RPF1 "Protein involved in assembl... 396 2.0e-47 2
CGD|CAL0003496 - symbol:RPF1 species:5476 "Candida albica... 368 8.5e-43 2
ASPGD|ASPL0000077745 - symbol:AN8834 species:162425 "Emer... 402 1.9e-37 1
TAIR|locus:2026689 - symbol:IMP4 "AT1G63780" species:3702... 305 8.2e-37 2
POMBASE|SPAC4F8.04 - symbol:SPAC4F8.04 "Brix domain prote... 386 9.2e-36 1
DICTYBASE|DDB_G0302418 - symbol:imp4 "U3 small nucleolar ... 273 1.9e-35 2
FB|FBgn0039274 - symbol:CG11920 species:7227 "Drosophila ... 275 3.0e-33 2
WB|WBGene00014083 - symbol:ZK795.3 species:6239 "Caenorha... 286 7.9e-33 2
ZFIN|ZDB-GENE-040718-474 - symbol:imp4 "IMP4, U3 small nu... 280 7.9e-33 2
POMBASE|SPAC19A8.07c - symbol:SPAC19A8.07c "U3 snoRNP-ass... 277 2.3e-31 2
UNIPROTKB|Q0VD01 - symbol:IMP4 "U3 small nucleolar ribonu... 264 1.3e-30 2
UNIPROTKB|Q96G21 - symbol:IMP4 "U3 small nucleolar ribonu... 255 4.2e-30 2
MGI|MGI:106572 - symbol:Imp4 "IMP4, U3 small nucleolar ri... 255 4.2e-30 2
RGD|1308463 - symbol:Imp4 "IMP4, U3 small nucleolar ribon... 255 4.2e-30 2
SGD|S000005019 - symbol:IMP4 "Component of the SSU proces... 261 5.9e-29 2
CGD|CAL0000877 - symbol:IMP4 species:5476 "Candida albica... 249 1.4e-27 2
UNIPROTKB|G4ND46 - symbol:MGG_00977 "U3 small nucleolar r... 199 1.6e-23 2
ASPGD|ASPL0000059866 - symbol:AN0647 species:162425 "Emer... 170 5.6e-19 2
GENEDB_PFALCIPARUM|PF08_0055 - symbol:PF08_0055 "u3 small... 175 9.3e-16 2
UNIPROTKB|Q8IB23 - symbol:PF08_0055 "U3 small nucleolar r... 175 9.3e-16 2
MGI|MGI:2178445 - symbol:Ppan "peter pan homolog (Drosoph... 88 0.00020 2
UNIPROTKB|G4NCH9 - symbol:MGG_01078 "Ribosome biogenesis ... 110 0.00096 1
>TAIR|locus:2116992 [details] [associations]
symbol:MEE49 "AT4G01560" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0009793 "embryo development ending in
seed dormancy" evidence=RCA;IMP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006626 "protein targeting to mitochondrion"
evidence=RCA] [GO:0009640 "photomorphogenesis" evidence=RCA]
[GO:0009845 "seed germination" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0009933
"meristem structural organization" evidence=RCA] [GO:0010162 "seed
dormancy process" evidence=RCA] [GO:0010182 "sugar mediated
signaling pathway" evidence=RCA] [GO:0010228 "vegetative to
reproductive phase transition of meristem" evidence=RCA]
[GO:0010564 "regulation of cell cycle process" evidence=RCA]
[GO:0016567 "protein ubiquitination" evidence=RCA] [GO:0019915
"lipid storage" evidence=RCA] [GO:0048366 "leaf development"
evidence=RCA] [GO:0048825 "cotyledon development" evidence=RCA]
[GO:0050826 "response to freezing" evidence=RCA] [GO:0051301 "cell
division" evidence=RCA] InterPro:IPR004154 GO:GO:0005829
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0009793 EMBL:AL161492
InterPro:IPR007109 Pfam:PF04427 SMART:SM00879 SUPFAM:SSF52954
PROSITE:PS50833 KO:K14846 HOGENOM:HOG000172062 OMA:IENQRVY
EMBL:AY050341 EMBL:AY086463 EMBL:BT020609 IPI:IPI00523270
PIR:C85020 RefSeq:NP_567213.1 UniGene:At.3828
ProteinModelPortal:Q9M125 STRING:Q9M125 PRIDE:Q9M125
EnsemblPlants:AT4G01560.1 GeneID:828136 KEGG:ath:AT4G01560
TAIR:At4g01560 InParanoid:Q9M125 PhylomeDB:Q9M125
ProtClustDB:CLSN2689273 ArrayExpress:Q9M125 Genevestigator:Q9M125
Uniprot:Q9M125
Length = 343
Score = 922 (329.6 bits), Expect = 1.5e-92, P = 1.5e-92
Identities = 178/217 (82%), Positives = 187/217 (86%)
Query: 55 RGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLP 114
RGPA ISELLSVIPNSHY KRGTYDLKKI+EYA KKDFTS+IVVHTNRREPDALLIIGLP
Sbjct: 140 RGPALISELLSVIPNSHYQKRGTYDLKKIVEYATKKDFTSLIVVHTNRREPDALLIIGLP 199
Query: 115 DGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRG 174
+GPTAHFKLS LVLRKDIKNHGNPT H PELVLNNF TRLG+RVGR QSLFP P FRG
Sbjct: 200 NGPTAHFKLSNLVLRKDIKNHGNPTSHQPELVLNNFTTRLGNRVGRFFQSLFPPDPNFRG 259
Query: 175 RRVVTFHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPR 234
RRVVTFHNQRDFIFFRHHRYIFETKESK S+K ++ + RLQECGPR
Sbjct: 260 RRVVTFHNQRDFIFFRHHRYIFETKESK-------------SDKGKEETIKPRLQECGPR 306
Query: 235 FTLKLVSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 271
FTLKLV+LQHGTFDTKGGEFEWVHKPEMDTSRRRFFL
Sbjct: 307 FTLKLVTLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 343
>UNIPROTKB|A4FUG9 [details] [associations]
symbol:BXDC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005730 "nucleolus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004154 GO:GO:0005730
GO:GO:0003723 InterPro:IPR007109 Pfam:PF04427 SMART:SM00879
SUPFAM:SSF52954 PROSITE:PS50833 eggNOG:COG2136
GeneTree:ENSGT00550000074691 KO:K14846 CTD:80135
HOGENOM:HOG000172062 HOVERGEN:HBG083559 OMA:IENQRVY
OrthoDB:EOG40VVQ0 EMBL:DAAA02008080 EMBL:BC114877 IPI:IPI00706366
RefSeq:NP_001076886.1 UniGene:Bt.18412 STRING:A4FUG9
Ensembl:ENSBTAT00000010676 GeneID:513081 KEGG:bta:513081
InParanoid:A4FUG9 NextBio:20870694 Uniprot:A4FUG9
Length = 349
Score = 446 (162.1 bits), Expect = 1.6e-59, Sum P(2) = 1.6e-59
Identities = 84/151 (55%), Positives = 114/151 (75%)
Query: 62 ELLSVIPNSH-YYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAH 120
+L +VIPNSH YY+RG LKKII +DFT +IV++ +R+ P+ L++ LP+GPTAH
Sbjct: 162 QLSTVIPNSHVYYRRGLA-LKKIIPQCISRDFTDLIVINEDRKIPNGLILSHLPNGPTAH 220
Query: 121 FKLSKLVLRKDIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVT 179
FK+S + LRK+IK G +PT HIPE++LNNF TRLGH +GR+ SLFP +P+F GR+V T
Sbjct: 221 FKMSSVRLRKEIKRRGKDPTEHIPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVAT 280
Query: 180 FHNQRDFIFFRHHRYIFETKESKGSDANGKK 210
FHNQRD+IFFR HRYIF++++ G G +
Sbjct: 281 FHNQRDYIFFRFHRYIFKSEKKVGIQELGPR 311
Score = 182 (69.1 bits), Expect = 1.6e-59, Sum P(2) = 1.6e-59
Identities = 38/53 (71%), Positives = 44/53 (83%)
Query: 220 SQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKP-EMDTSRRRFFL 271
S++KV +QE GPRFTLKL SLQ GTFD+K GE+EWVHKP EMDTSRR+F L
Sbjct: 299 SEKKV--GIQELGPRFTLKLRSLQKGTFDSKYGEYEWVHKPREMDTSRRKFHL 349
>UNIPROTKB|Q9H9Y2 [details] [associations]
symbol:RPF1 "Ribosome production factor 1" species:9606
"Homo sapiens" [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0019843 "rRNA binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA]
InterPro:IPR004154 GO:GO:0005730 GO:GO:0003723 GO:GO:0019843
GO:GO:0006364 InterPro:IPR007109 Pfam:PF04427 SMART:SM00879
SUPFAM:SSF52954 PROSITE:PS50833 EMBL:AL359762 eggNOG:COG2136
KO:K14846 EMBL:AF322053 EMBL:AK022537 EMBL:AL844170 EMBL:BC016051
EMBL:CR627468 EMBL:AL359584 IPI:IPI00292221 PIR:T50616
RefSeq:NP_079341.2 UniGene:Hs.481202 ProteinModelPortal:Q9H9Y2
STRING:Q9H9Y2 PhosphoSite:Q9H9Y2 DMDM:71153718 SWISS-2DPAGE:Q9H9Y2
PaxDb:Q9H9Y2 PRIDE:Q9H9Y2 DNASU:80135 Ensembl:ENST00000370654
Ensembl:ENST00000370656 GeneID:80135 KEGG:hsa:80135 UCSC:uc001djv.4
CTD:80135 GeneCards:GC01P084945 HGNC:HGNC:30350 HPA:HPA024642
neXtProt:NX_Q9H9Y2 PharmGKB:PA165752348 HOGENOM:HOG000172062
HOVERGEN:HBG083559 InParanoid:Q9H9Y2 OMA:IENQRVY OrthoDB:EOG40VVQ0
ChiTaRS:RPF1 GenomeRNAi:80135 NextBio:70391 Bgee:Q9H9Y2
CleanEx:HS_BXDC5 Genevestigator:Q9H9Y2 GermOnline:ENSG00000117133
Uniprot:Q9H9Y2
Length = 349
Score = 446 (162.1 bits), Expect = 1.6e-59, Sum P(2) = 1.6e-59
Identities = 84/151 (55%), Positives = 113/151 (74%)
Query: 62 ELLSVIPNSH-YYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAH 120
+L +VIPNSH YY+RG LKKII +DFT +IV++ +R+ P+ L++ LP+GPTAH
Sbjct: 162 QLSTVIPNSHVYYRRGLA-LKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAH 220
Query: 121 FKLSKLVLRKDIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVT 179
FK+S + LRK+IK G +PT HIPE++LNNF TRLGH +GR+ SLFP +P+F GR+V T
Sbjct: 221 FKMSSVRLRKEIKRRGKDPTEHIPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVAT 280
Query: 180 FHNQRDFIFFRHHRYIFETKESKGSDANGKK 210
FHNQRD+IFFR HRYIF +++ G G +
Sbjct: 281 FHNQRDYIFFRFHRYIFRSEKKVGIQELGPR 311
Score = 182 (69.1 bits), Expect = 1.6e-59, Sum P(2) = 1.6e-59
Identities = 38/53 (71%), Positives = 44/53 (83%)
Query: 220 SQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKP-EMDTSRRRFFL 271
S++KV +QE GPRFTLKL SLQ GTFD+K GE+EWVHKP EMDTSRR+F L
Sbjct: 299 SEKKV--GIQELGPRFTLKLRSLQKGTFDSKYGEYEWVHKPREMDTSRRKFHL 349
>UNIPROTKB|Q5R631 [details] [associations]
symbol:RPF1 "Ribosome production factor 1" species:9601
"Pongo abelii" [GO:0003723 "RNA binding" evidence=ISS] [GO:0005730
"nucleolus" evidence=ISS] InterPro:IPR004154 GO:GO:0005730
GO:GO:0003723 GO:GO:0019843 GO:GO:0006364 InterPro:IPR007109
Pfam:PF04427 SMART:SM00879 SUPFAM:SSF52954 PROSITE:PS50833
KO:K14846 CTD:80135 HOVERGEN:HBG083559 EMBL:CR860667
RefSeq:NP_001126626.1 UniGene:Pab.1862 ProteinModelPortal:Q5R631
GeneID:100173623 KEGG:pon:100173623 InParanoid:Q5R631
Uniprot:Q5R631
Length = 349
Score = 446 (162.1 bits), Expect = 1.6e-59, Sum P(2) = 1.6e-59
Identities = 84/151 (55%), Positives = 113/151 (74%)
Query: 62 ELLSVIPNSH-YYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAH 120
+L +VIPNSH YY+RG LKKII +DFT +IV++ +R+ P+ L++ LP+GPTAH
Sbjct: 162 QLSTVIPNSHVYYRRGLA-LKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAH 220
Query: 121 FKLSKLVLRKDIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVT 179
FK+S + LRK+IK G +PT HIPE++LNNF TRLGH +GR+ SLFP +P+F GR+V T
Sbjct: 221 FKMSSVRLRKEIKRRGKDPTEHIPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVAT 280
Query: 180 FHNQRDFIFFRHHRYIFETKESKGSDANGKK 210
FHNQRD+IFFR HRYIF +++ G G +
Sbjct: 281 FHNQRDYIFFRFHRYIFRSEKKVGIQELGPR 311
Score = 182 (69.1 bits), Expect = 1.6e-59, Sum P(2) = 1.6e-59
Identities = 38/53 (71%), Positives = 44/53 (83%)
Query: 220 SQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKP-EMDTSRRRFFL 271
S++KV +QE GPRFTLKL SLQ GTFD+K GE+EWVHKP EMDTSRR+F L
Sbjct: 299 SEKKV--GIQELGPRFTLKLRSLQKGTFDSKYGEYEWVHKPREMDTSRRKFHL 349
>UNIPROTKB|E2RLN4 [details] [associations]
symbol:RPF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005730 "nucleolus" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR004154 GO:GO:0005730
GO:GO:0003723 InterPro:IPR007109 Pfam:PF04427 SMART:SM00879
SUPFAM:SSF52954 PROSITE:PS50833 GeneTree:ENSGT00550000074691
KO:K14846 CTD:80135 OMA:IENQRVY EMBL:AAEX03004866
RefSeq:XP_537096.1 ProteinModelPortal:E2RLN4
Ensembl:ENSCAFT00000032351 GeneID:479972 KEGG:cfa:479972
NextBio:20855075 Uniprot:E2RLN4
Length = 349
Score = 444 (161.4 bits), Expect = 2.6e-59, Sum P(2) = 2.6e-59
Identities = 84/151 (55%), Positives = 113/151 (74%)
Query: 62 ELLSVIPNSH-YYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAH 120
+L +VIPNSH YY+RG LKKII +DFT +IV++ +R+ P+ L++ LP GPTAH
Sbjct: 162 QLSTVIPNSHVYYRRGLA-LKKIIPQCISRDFTDLIVINEDRKIPNGLILSHLPSGPTAH 220
Query: 121 FKLSKLVLRKDIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVT 179
FK+S + LRK+IK G +PT HIPE++LNNF TRLGH +GR+ SLFP +P+F GR+V T
Sbjct: 221 FKMSSVRLRKEIKRRGKDPTEHIPEVILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVAT 280
Query: 180 FHNQRDFIFFRHHRYIFETKESKGSDANGKK 210
FHNQRD+IFFR HRYIF++++ G G +
Sbjct: 281 FHNQRDYIFFRFHRYIFKSEKKVGIQELGPR 311
Score = 182 (69.1 bits), Expect = 2.6e-59, Sum P(2) = 2.6e-59
Identities = 38/53 (71%), Positives = 44/53 (83%)
Query: 220 SQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKP-EMDTSRRRFFL 271
S++KV +QE GPRFTLKL SLQ GTFD+K GE+EWVHKP EMDTSRR+F L
Sbjct: 299 SEKKV--GIQELGPRFTLKLRSLQKGTFDSKYGEYEWVHKPREMDTSRRKFHL 349
>UNIPROTKB|I3LN44 [details] [associations]
symbol:RPF1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004154 GO:GO:0005730
GO:GO:0003723 InterPro:IPR007109 Pfam:PF04427 SMART:SM00879
SUPFAM:SSF52954 PROSITE:PS50833 GeneTree:ENSGT00550000074691
OMA:IENQRVY Ensembl:ENSSSCT00000032078 Uniprot:I3LN44
Length = 339
Score = 441 (160.3 bits), Expect = 5.4e-59, Sum P(2) = 5.4e-59
Identities = 83/151 (54%), Positives = 113/151 (74%)
Query: 62 ELLSVIPNSH-YYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAH 120
+L +VIPNSH YY+RG LKKII +DFT +IV++ +R+ P+ L++ LP+GPTAH
Sbjct: 152 QLSTVIPNSHVYYRRGLA-LKKIIPQCISRDFTDLIVINEDRKIPNGLILSHLPNGPTAH 210
Query: 121 FKLSKLVLRKDIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVT 179
FK+S + LRK+IK G +PT H PE++LNNF TRLGH +GR+ SLFP +P+F GR+V T
Sbjct: 211 FKMSSVRLRKEIKRRGKDPTEHTPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVAT 270
Query: 180 FHNQRDFIFFRHHRYIFETKESKGSDANGKK 210
FHNQRD+IFFR HRYIF++++ G G +
Sbjct: 271 FHNQRDYIFFRFHRYIFKSEKKVGIQELGPR 301
Score = 182 (69.1 bits), Expect = 5.4e-59, Sum P(2) = 5.4e-59
Identities = 38/53 (71%), Positives = 44/53 (83%)
Query: 220 SQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKP-EMDTSRRRFFL 271
S++KV +QE GPRFTLKL SLQ GTFD+K GE+EWVHKP EMDTSRR+F L
Sbjct: 289 SEKKV--GIQELGPRFTLKLRSLQKGTFDSKYGEYEWVHKPREMDTSRRKFHL 339
>MGI|MGI:1917535 [details] [associations]
symbol:Rpf1 "ribosome production factor 1 homolog (S.
cerevisiae)" species:10090 "Mus musculus" [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0019843 "rRNA binding" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] InterPro:IPR004154 MGI:MGI:1917535
GO:GO:0005730 GO:GO:0003723 GO:GO:0019843 GO:GO:0006364
InterPro:IPR007109 Pfam:PF04427 SMART:SM00879 SUPFAM:SSF52954
PROSITE:PS50833 eggNOG:COG2136 GeneTree:ENSGT00550000074691
KO:K14846 CTD:80135 HOGENOM:HOG000172062 HOVERGEN:HBG083559
OMA:IENQRVY OrthoDB:EOG40VVQ0 EMBL:AK171079 EMBL:BC028802
EMBL:BC056165 EMBL:BC089369 IPI:IPI00380313 RefSeq:NP_081608.1
RefSeq:NP_081647.2 UniGene:Mm.28128 ProteinModelPortal:Q7TND5
STRING:Q7TND5 PhosphoSite:Q7TND5 PaxDb:Q7TND5 PRIDE:Q7TND5
Ensembl:ENSMUST00000029838 GeneID:70285 KEGG:mmu:70285
UCSC:uc008rrl.2 InParanoid:Q7TND5 NextBio:331302 Bgee:Q7TND5
CleanEx:MM_BXDC5 Genevestigator:Q7TND5
GermOnline:ENSMUSG00000028187 Uniprot:Q7TND5
Length = 349
Score = 441 (160.3 bits), Expect = 5.4e-59, Sum P(2) = 5.4e-59
Identities = 82/151 (54%), Positives = 114/151 (75%)
Query: 62 ELLSVIPNSH-YYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAH 120
+L +VIP+SH YY+RG LKKII +DFT +IV++ +R+ P+ L++ LP+GPTAH
Sbjct: 162 QLSTVIPDSHVYYRRGLA-LKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAH 220
Query: 121 FKLSKLVLRKDIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVT 179
FK+S + LRK+IK G +PT H+PE++LNNF TRLGH +GR+ SLFP +P+F GR+V T
Sbjct: 221 FKMSSVRLRKEIKRRGKDPTEHVPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVAT 280
Query: 180 FHNQRDFIFFRHHRYIFETKESKGSDANGKK 210
FHNQRD+IFFR HRYIF++++ G G +
Sbjct: 281 FHNQRDYIFFRFHRYIFKSEKKVGIQELGPR 311
Score = 182 (69.1 bits), Expect = 5.4e-59, Sum P(2) = 5.4e-59
Identities = 38/53 (71%), Positives = 44/53 (83%)
Query: 220 SQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKP-EMDTSRRRFFL 271
S++KV +QE GPRFTLKL SLQ GTFD+K GE+EWVHKP EMDTSRR+F L
Sbjct: 299 SEKKV--GIQELGPRFTLKLRSLQKGTFDSKYGEYEWVHKPREMDTSRRKFHL 349
>UNIPROTKB|F1NRK2 [details] [associations]
symbol:RPF1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] InterPro:IPR004154 GO:GO:0005730
GO:GO:0003723 InterPro:IPR007109 Pfam:PF04427 SMART:SM00879
SUPFAM:SSF52954 PROSITE:PS50833 GeneTree:ENSGT00550000074691
OMA:IENQRVY EMBL:AADN02012801 IPI:IPI00584227
Ensembl:ENSGALT00000014300 Uniprot:F1NRK2
Length = 347
Score = 443 (161.0 bits), Expect = 3.8e-58, Sum P(2) = 3.8e-58
Identities = 83/154 (53%), Positives = 113/154 (73%)
Query: 59 FISELLSVIPNSH-YYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGP 117
F +L +VIPNSH YY+RG LK+II +DFT +IV++ +R+ P+ L++ LPDGP
Sbjct: 157 FCEQLSTVIPNSHVYYRRGLA-LKRIIPQCIARDFTDLIVINEDRKIPNGLVLSHLPDGP 215
Query: 118 TAHFKLSKLVLRKDIKNHGN-PTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRR 176
TAHF++S + LRK+IK G PT H+PE++LNNF TRLGH +GR+ SLFP P+F GR+
Sbjct: 216 TAHFRMSSVRLRKEIKRKGKEPTEHVPEVILNNFTTRLGHSIGRMFASLFPHDPQFIGRQ 275
Query: 177 VVTFHNQRDFIFFRHHRYIFETKESKGSDANGKK 210
V TFHNQRD+IFFR HRYIF++++ G G +
Sbjct: 276 VATFHNQRDYIFFRFHRYIFKSEKKVGIQELGPR 309
Score = 172 (65.6 bits), Expect = 3.8e-58, Sum P(2) = 3.8e-58
Identities = 36/53 (67%), Positives = 43/53 (81%)
Query: 220 SQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKP-EMDTSRRRFFL 271
S++KV +QE GPRFTLKL SLQ GTFD+K GE+EW+HK EMDTSRR+F L
Sbjct: 297 SEKKV--GIQELGPRFTLKLRSLQKGTFDSKFGEYEWIHKRREMDTSRRKFHL 347
>UNIPROTKB|Q8AVP1 [details] [associations]
symbol:rpf1 "Ribosome production factor 1" species:8355
"Xenopus laevis" [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005730 "nucleolus" evidence=ISS] InterPro:IPR004154
GO:GO:0005730 GO:GO:0003723 GO:GO:0019843 GO:GO:0006364
InterPro:IPR007109 Pfam:PF04427 SMART:SM00879 SUPFAM:SSF52954
PROSITE:PS50833 KO:K14846 HOVERGEN:HBG083559 EMBL:BC041557
RefSeq:NP_001080272.1 UniGene:Xl.1785 ProteinModelPortal:Q8AVP1
GeneID:379964 KEGG:xla:379964 CTD:379964 Uniprot:Q8AVP1
Length = 343
Score = 430 (156.4 bits), Expect = 6.9e-57, Sum P(2) = 6.9e-57
Identities = 80/158 (50%), Positives = 112/158 (70%)
Query: 55 RGPAFISELLSVIPNSH-YYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGL 113
R F +L S+IPNS YY+RG LKKII +D+T ++V++ +R+ P+ L++ L
Sbjct: 149 RSVRFTEQLSSIIPNSDVYYRRGLA-LKKIIPQCVSRDYTDLLVINEDRKVPNGLVLCHL 207
Query: 114 PDGPTAHFKLSKLVLRKDIKNHGN-PTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEF 172
PDGPTAHFK+S + LRK++K G PT H PE++LNNF TRLGH +GR+ SL+P P F
Sbjct: 208 PDGPTAHFKISNVRLRKEMKRKGKEPTEHKPEVILNNFTTRLGHSIGRMFASLYPHDPHF 267
Query: 173 RGRRVVTFHNQRDFIFFRHHRYIFETKESKGSDANGKK 210
GR+V TFHNQRD+IFFR+HRY+F++++ G G +
Sbjct: 268 VGRQVATFHNQRDYIFFRYHRYLFKSEKKVGIQELGPR 305
Score = 173 (66.0 bits), Expect = 6.9e-57, Sum P(2) = 6.9e-57
Identities = 37/53 (69%), Positives = 43/53 (81%)
Query: 220 SQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKP-EMDTSRRRFFL 271
S++KV +QE GPRFTLKL SLQ GTFD+K GE+EWVHK EMDTSRR+F L
Sbjct: 293 SEKKV--GIQELGPRFTLKLRSLQKGTFDSKYGEYEWVHKRHEMDTSRRKFHL 343
>ZFIN|ZDB-GENE-040625-177 [details] [associations]
symbol:rpf1 "ribosome production factor 1 homolog
(S. cerevisiae)" species:7955 "Danio rerio" [GO:0005730 "nucleolus"
evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0019843 "rRNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] InterPro:IPR004154
ZFIN:ZDB-GENE-040625-177 InterPro:IPR007109 Pfam:PF04427
SMART:SM00879 SUPFAM:SSF52954 PROSITE:PS50833
GeneTree:ENSGT00550000074691 EMBL:CR854846 EMBL:CR848761
IPI:IPI00488496 Ensembl:ENSDART00000143436 Bgee:F1QQ11
Uniprot:F1QQ11
Length = 352
Score = 423 (154.0 bits), Expect = 2.0e-55, Sum P(2) = 2.0e-55
Identities = 79/154 (51%), Positives = 111/154 (72%)
Query: 59 FISELLSVIPNSH-YYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGP 117
F +L +VIP+++ YY+RG LKK+I + FT ++V++ +R+ P+ +++ LPDGP
Sbjct: 162 FCDQLATVIPHAYVYYRRGLA-LKKVIPQCISRGFTYLMVINEDRKVPNGMVLCHLPDGP 220
Query: 118 TAHFKLSKLVLRKDIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRR 176
TAHFK+S + LRK++K G NPT H PE++LNNF TRLGH +GRL +LFP P+F GR+
Sbjct: 221 TAHFKVSSVRLRKEMKRRGKNPTEHSPEVILNNFTTRLGHSIGRLFAALFPHDPQFVGRQ 280
Query: 177 VVTFHNQRDFIFFRHHRYIFETKESKGSDANGKK 210
V TFHNQRDFIFFR HRYIF+ ++ G G +
Sbjct: 281 VATFHNQRDFIFFRFHRYIFKNEKKVGIQELGPR 314
Score = 166 (63.5 bits), Expect = 2.0e-55, Sum P(2) = 2.0e-55
Identities = 33/45 (73%), Positives = 38/45 (84%)
Query: 228 LQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKP-EMDTSRRRFFL 271
+QE GPRFTLKL SLQ GTFD+K GE+EWVHK EMD+SRR+F L
Sbjct: 308 IQELGPRFTLKLRSLQKGTFDSKFGEYEWVHKRHEMDSSRRKFHL 352
>WB|WBGene00009711 [details] [associations]
symbol:F44G4.1 species:6239 "Caenorhabditis elegans"
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] InterPro:IPR004154 GO:GO:0006898
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 InterPro:IPR007109
Pfam:PF04427 SMART:SM00879 SUPFAM:SSF52954 PROSITE:PS50833
eggNOG:COG2136 EMBL:Z49910 GeneTree:ENSGT00550000074691 KO:K14846
HOGENOM:HOG000172062 PIR:B88252 PIR:T19409 RefSeq:NP_495918.1
ProteinModelPortal:P54073 STRING:P54073 PaxDb:P54073
EnsemblMetazoa:F44G4.1 GeneID:174434 KEGG:cel:CELE_F44G4.1
UCSC:F44G4.1 CTD:174434 WormBase:F44G4.1 InParanoid:P54073
OMA:RDEDATM NextBio:884024 Uniprot:P54073
Length = 384
Score = 429 (156.1 bits), Expect = 8.8e-55, Sum P(2) = 8.8e-55
Identities = 76/146 (52%), Positives = 104/146 (71%)
Query: 59 FISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPT 118
F EL IPNS + R LK IIE AK+++FT ++VVH +R++P+ ++ LP+GPT
Sbjct: 194 FCFELQKCIPNSEIFTRKNVLLKTIIEQAKEREFTDLLVVHEDRKKPNGIIFCHLPEGPT 253
Query: 119 AHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVV 178
A+FK++ L +D+K G T H PE++LNNF TRLGH + R++ LFP P+F GRRVV
Sbjct: 254 AYFKINSLTFTQDLKKFGESTSHFPEVILNNFNTRLGHNIARMLACLFPHDPKFTGRRVV 313
Query: 179 TFHNQRDFIFFRHHRYIFETKESKGS 204
TFHNQRD+IFFRHHRY F+ + SK +
Sbjct: 314 TFHNQRDYIFFRHHRYEFKKEGSKAA 339
Score = 154 (59.3 bits), Expect = 8.8e-55, Sum P(2) = 8.8e-55
Identities = 33/45 (73%), Positives = 35/45 (77%)
Query: 228 LQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKP-EMDTSRRRFFL 271
L E GPRFTL+L LQ GTFD K GEFEWV K EM+TSRRRFFL
Sbjct: 340 LLELGPRFTLRLKWLQKGTFDAKWGEFEWVLKRHEMETSRRRFFL 384
>RGD|1559755 [details] [associations]
symbol:Rpf1 "ribosome production factor 1 homolog (S.
cerevisiae)" species:10116 "Rattus norvegicus" [GO:0003723 "RNA
binding" evidence=IEA;ISO;ISS] [GO:0005730 "nucleolus"
evidence=IEA;ISO;ISS] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0019843 "rRNA binding" evidence=IEA] InterPro:IPR004154
RGD:1559755 GO:GO:0005730 GO:GO:0003723 GO:GO:0019843 GO:GO:0006364
InterPro:IPR007109 Pfam:PF04427 SMART:SM00879 SUPFAM:SSF52954
PROSITE:PS50833 eggNOG:COG2136 HOVERGEN:HBG083559 OrthoDB:EOG40VVQ0
EMBL:RNOR03268045 EMBL:BC086515 IPI:IPI00915544 UniGene:Rn.63896
ProteinModelPortal:Q5RJS9 STRING:Q5RJS9 InParanoid:Q5RJS9
ArrayExpress:Q5RJS9 Genevestigator:Q5RJS9 Uniprot:Q5RJS9
Length = 345
Score = 441 (160.3 bits), Expect = 2.3e-54, Sum P(2) = 2.3e-54
Identities = 82/151 (54%), Positives = 114/151 (75%)
Query: 62 ELLSVIPNSH-YYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAH 120
+L +VIP+SH YY+RG LKKII +DFT +IV++ +R+ P+ L++ LP+GPTAH
Sbjct: 162 QLSTVIPDSHVYYRRGLA-LKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAH 220
Query: 121 FKLSKLVLRKDIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVT 179
FK+S + LRK+IK G +PT H+PE++LNNF TRLGH +GR+ SLFP +P+F GR+V T
Sbjct: 221 FKMSSVRLRKEIKRRGKDPTEHVPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVAT 280
Query: 180 FHNQRDFIFFRHHRYIFETKESKGSDANGKK 210
FHNQRD+IFFR HRYIF++++ G G +
Sbjct: 281 FHNQRDYIFFRFHRYIFKSEKKVGIQELGPR 311
Score = 138 (53.6 bits), Expect = 2.3e-54, Sum P(2) = 2.3e-54
Identities = 28/40 (70%), Positives = 33/40 (82%)
Query: 220 SQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHK 259
S++KV +QE GPRFTLKL SLQ GTFD+K GE+EWVHK
Sbjct: 299 SEKKV--GIQELGPRFTLKLRSLQKGTFDSKYGEYEWVHK 336
>FB|FBgn0032408 [details] [associations]
symbol:CG6712 species:7227 "Drosophila melanogaster"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] InterPro:IPR004154 GO:GO:0005730 EMBL:AE014134
GO:GO:0003723 GO:GO:0019843 GO:GO:0006364 InterPro:IPR007109
Pfam:PF04427 SMART:SM00879 SUPFAM:SSF52954 PROSITE:PS50833
eggNOG:COG2136 EMBL:AY051683 RefSeq:NP_477479.1 UniGene:Dm.8705
ProteinModelPortal:Q9VKB4 STRING:Q9VKB4 PaxDb:Q9VKB4 PRIDE:Q9VKB4
EnsemblMetazoa:FBtr0080364 GeneID:34631 KEGG:dme:Dmel_CG6712
UCSC:CG6712-RA FlyBase:FBgn0032408 GeneTree:ENSGT00550000074691
InParanoid:Q9VKB4 KO:K14846 OMA:IFFRHYR OrthoDB:EOG4MPG5T
PhylomeDB:Q9VKB4 GenomeRNAi:34631 NextBio:789413 Bgee:Q9VKB4
GermOnline:CG6712 Uniprot:Q9VKB4
Length = 394
Score = 407 (148.3 bits), Expect = 5.4e-51, Sum P(2) = 5.4e-51
Identities = 79/142 (55%), Positives = 104/142 (73%)
Query: 62 ELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHF 121
EL + PN+ R +KKI + A++++FT +++V+ +RR+P+ LL+I LP+GPTAHF
Sbjct: 205 ELSRIFPNALVKIRNKSSVKKICKSAEREEFTDVVIVNEDRRKPNGLLVIHLPNGPTAHF 264
Query: 122 KLSKLVLRKDIK-NHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTF 180
KLS + L DIK +H T H PE++LNNF TRLG VGR++ +LF PEFRGRR VTF
Sbjct: 265 KLSNVKLTSDIKRDHKEITKHRPEVILNNFTTRLGLTVGRMLGALFHHDPEFRGRRAVTF 324
Query: 181 HNQRDFIFFRHHRYIFETKESK 202
HNQRD+IFFRHHRY F TKE K
Sbjct: 325 HNQRDYIFFRHHRYEF-TKEGK 345
Score = 140 (54.3 bits), Expect = 5.4e-51, Sum P(2) = 5.4e-51
Identities = 31/57 (54%), Positives = 40/57 (70%)
Query: 217 EKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWV--HKPEMDTSRRRFFL 271
E T + K + +L+E GPRFTLKL SLQ GTFD+K G++ W+ +K SRRRFFL
Sbjct: 339 EFTKEGKRV-KLRELGPRFTLKLRSLQEGTFDSKTGDYAWIISNKRHAMESRRRFFL 394
>DICTYBASE|DDB_G0285829 [details] [associations]
symbol:bxdc5 "brix domain-containing protein"
species:44689 "Dictyostelium discoideum" [GO:0042134 "rRNA primary
transcript binding" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0000027 "ribosomal large subunit assembly"
evidence=ISS] InterPro:IPR004154 dictyBase:DDB_G0285829
GO:GO:0005730 GenomeReviews:CM000153_GR InterPro:IPR007109
Pfam:PF04427 SMART:SM00879 SUPFAM:SSF52954 PROSITE:PS50833
GO:GO:0042134 GO:GO:0000027 EMBL:AAFI02000080 eggNOG:COG2136
KO:K14846 OMA:IENQRVY RefSeq:XP_638044.1 ProteinModelPortal:Q54MN3
STRING:Q54MN3 EnsemblProtists:DDB0232092 GeneID:8625308
KEGG:ddi:DDB_G0285829 InParanoid:Q54MN3 Uniprot:Q54MN3
Length = 317
Score = 391 (142.7 bits), Expect = 6.0e-48, Sum P(2) = 6.0e-48
Identities = 75/149 (50%), Positives = 99/149 (66%)
Query: 59 FISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPT 118
F ++PN ++ R Y LK+I+++ +D+T IIVV+ + D L I LP+GPT
Sbjct: 129 FAQVFTKLLPNCEFFHRRKYHLKEIVQFCNNRDYTDIIVVNETKGIIDELTISHLPNGPT 188
Query: 119 AHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVV 178
A F+L+ LV+ +DI G T H EL++NNF TRLGH +GR+ S+F Q P F+GRRV
Sbjct: 189 AVFRLTNLVMPEDIPGGGEMTSHKAELIVNNFTTRLGHSIGRMFASMFAQDPNFKGRRVC 248
Query: 179 TFHNQRDFIFFRHHRYIFETKESKGSDAN 207
T HNQRDFIFFR HRYIFE+KE DAN
Sbjct: 249 TLHNQRDFIFFRQHRYIFESKE----DAN 273
Score = 127 (49.8 bits), Expect = 6.0e-48, Sum P(2) = 6.0e-48
Identities = 25/51 (49%), Positives = 34/51 (66%)
Query: 221 QQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 271
+ K +QE GPRFTLKL SLQ G+F+T GE+ +H+ MD R++F L
Sbjct: 267 ESKEDANVQELGPRFTLKLKSLQKGSFNTSTGEYIHLHQHNMDVDRKKFVL 317
>SGD|S000001130 [details] [associations]
symbol:RPF1 "Protein involved in assembly and export of the
large ribosomal subunit" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA;IDA;IPI] [GO:0000055 "ribosomal large subunit export
from nucleus" evidence=IMP] [GO:0000027 "ribosomal large subunit
assembly" evidence=IPI] [GO:0000463 "maturation of LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0000466 "maturation of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0030687 "preribosome, large subunit precursor"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0042134 "rRNA primary
transcript binding" evidence=IPI] [GO:0019843 "rRNA binding"
evidence=IEA] [GO:0042254 "ribosome biogenesis" evidence=IEA]
InterPro:IPR004154 SGD:S000001130 GO:GO:0005730 EMBL:BK006934
GO:GO:0030687 GO:GO:0000055 GO:GO:0000463 InterPro:IPR007109
Pfam:PF04427 SMART:SM00879 SUPFAM:SSF52954 PROSITE:PS50833
GO:GO:0042134 GO:GO:0000027 GO:GO:0000466 EMBL:U00060
eggNOG:COG2136 GeneTree:ENSGT00550000074691 KO:K14846
HOGENOM:HOG000172062 OMA:IENQRVY PIR:S46718 RefSeq:NP_011956.1
ProteinModelPortal:P38805 DIP:DIP-6511N IntAct:P38805
MINT:MINT-634203 STRING:P38805 PaxDb:P38805 EnsemblFungi:YHR088W
GeneID:856488 KEGG:sce:YHR088W CYGD:YHR088w OrthoDB:EOG4JT3FB
NextBio:982188 Genevestigator:P38805 GermOnline:YHR088W
Uniprot:P38805
Length = 295
Score = 396 (144.5 bits), Expect = 2.0e-47, Sum P(2) = 2.0e-47
Identities = 73/146 (50%), Positives = 101/146 (69%)
Query: 59 FISELLSVIPNSHYYKRGT-YDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGP 117
F + L+ ++PN + KR Y LK+I + K++FT I++++ ++++ L I LP+GP
Sbjct: 110 FANILIEILPNVTFVKRKFGYKLKEISDICIKRNFTDIVIINEDKKKVTGLTFIHLPEGP 169
Query: 118 TAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRV 177
T +FKLS V K I HG PT HIPEL+LNNF TRLG VGRL QS+ PQ+P+ GR+V
Sbjct: 170 TFYFKLSSFVEVKKIVGHGRPTSHIPELILNNFQTRLGQTVGRLFQSILPQNPDIEGRQV 229
Query: 178 VTFHNQRDFIFFRHHRYIFETKESKG 203
+T HNQRD+IFFR HRY+F+ E G
Sbjct: 230 ITLHNQRDYIFFRRHRYVFKDNERVG 255
Score = 117 (46.2 bits), Expect = 2.0e-47, Sum P(2) = 2.0e-47
Identities = 24/44 (54%), Positives = 30/44 (68%)
Query: 228 LQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 271
LQE GP+FTLKL LQ G + E EW HKPEMD +++F+L
Sbjct: 256 LQELGPQFTLKLKRLQRGIKE----ETEWEHKPEMDKEKKKFYL 295
>CGD|CAL0003496 [details] [associations]
symbol:RPF1 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IEA] [GO:0042134 "rRNA primary transcript
binding" evidence=IEA] [GO:0000055 "ribosomal large subunit export
from nucleus" evidence=IEA] [GO:0000466 "maturation of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0000027 "ribosomal large subunit assembly"
evidence=IEA] [GO:0000463 "maturation of LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
InterPro:IPR004154 CGD:CAL0003496 InterPro:IPR007109 Pfam:PF04427
SMART:SM00879 SUPFAM:SSF52954 PROSITE:PS50833 EMBL:AACQ01000023
EMBL:AACQ01000025 eggNOG:COG2136 KO:K14846 HOGENOM:HOG000172062
RefSeq:XP_720192.1 RefSeq:XP_720420.1 ProteinModelPortal:Q5AFD8
STRING:Q5AFD8 GeneID:3637890 GeneID:3638097 KEGG:cal:CaO19.10184
KEGG:cal:CaO19.2667 Uniprot:Q5AFD8
Length = 296
Score = 368 (134.6 bits), Expect = 8.5e-43, Sum P(2) = 8.5e-43
Identities = 64/146 (43%), Positives = 100/146 (68%)
Query: 59 FISELLSVIPNSHYYKRGT-YDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGP 117
F ++ +PN + KR Y ++ + +Y +DFT+++V++ ++++ + + +I LP+GP
Sbjct: 111 FADMIMDFLPNVTFIKRKKEYTMQDMAKYCSNRDFTALLVINEDKKKVNGITLINLPEGP 170
Query: 118 TAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRV 177
T +F ++ +V K IK HG ++PE+VLNNF +RLG VGRL QS+FP PE +GR+V
Sbjct: 171 TFYFSITSIVDGKRIKGHGKAGDYLPEIVLNNFNSRLGKTVGRLFQSIFPHKPELQGRQV 230
Query: 178 VTFHNQRDFIFFRHHRYIFETKESKG 203
+T HNQRD+IFFR HRYIF +E G
Sbjct: 231 ITLHNQRDYIFFRRHRYIFRNEEKVG 256
Score = 101 (40.6 bits), Expect = 8.5e-43, Sum P(2) = 8.5e-43
Identities = 21/52 (40%), Positives = 34/52 (65%)
Query: 220 SQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 271
+++KV LQE GP+FTLKL +Q G G+ W H+P+M+ +++F+L
Sbjct: 251 NEEKV--GLQELGPQFTLKLRRMQKGV----RGDVVWEHRPDMERDKKKFYL 296
>ASPGD|ASPL0000077745 [details] [associations]
symbol:AN8834 species:162425 "Emericella nidulans"
[GO:0000055 "ribosomal large subunit export from nucleus"
evidence=IEA] [GO:0000466 "maturation of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0000027 "ribosomal large subunit assembly"
evidence=IEA] [GO:0000463 "maturation of LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0042134 "rRNA primary transcript binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0030687 "preribosome,
large subunit precursor" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0004812
"aminoacyl-tRNA ligase activity" evidence=IEA] InterPro:IPR004154
EMBL:BN001303 InterPro:IPR007109 Pfam:PF04427 SMART:SM00879
SUPFAM:SSF52954 PROSITE:PS50833 EMBL:AACD01000162 eggNOG:COG2136
KO:K14846 HOGENOM:HOG000172062 OrthoDB:EOG4JT3FB RefSeq:XP_682103.1
ProteinModelPortal:Q5AS96 STRING:Q5AS96
EnsemblFungi:CADANIAT00006223 GeneID:2868340 KEGG:ani:AN8834.2
OMA:SGQEWEW Uniprot:Q5AS96
Length = 435
Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
Identities = 90/221 (40%), Positives = 132/221 (59%)
Query: 61 SELLS-VIPNSHYYKRGT------YDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGL 113
+E+L+ + PNS Y +R + +++I ++A +++T++I++ + ++P L I+ L
Sbjct: 224 AEILTQLFPNSVYIRRTAHAHAHKFSIREIAKFASNREYTTLIILQEDSKKPAGLDIVHL 283
Query: 114 PDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFR 173
P GP HF +S V K I HG PT H PEL+LNNF T LG L ++LFP P+
Sbjct: 284 PKGPMFHFSISNWVEGKKIPGHGKPTEHWPELILNNFRTPLGLLTAHLFRTLFPPQPDIE 343
Query: 174 GRRVVTFHNQRDFIFFRHHRYIF-ETKESKGS--DANGKKAKDAKSEKTSQQKVITRLQE 230
GR+VVT HNQRD+IF R HRY+F E +E++ + A+GK+ K A+ +T LQE
Sbjct: 344 GRQVVTLHNQRDYIFVRRHRYVFREKRETEKAVVGADGKEIKGAEGIRTG-------LQE 396
Query: 231 CGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 271
GPRFTLKL + G G E+EW K +M+ R F L
Sbjct: 397 LGPRFTLKLRRVDKGIQRASGQEWEW--KGKMEKKRTLFQL 435
>TAIR|locus:2026689 [details] [associations]
symbol:IMP4 "AT1G63780" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0005730 "nucleolus" evidence=TAS]
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=TAS] [GO:0006364 "rRNA processing" evidence=RCA;TAS]
[GO:0015030 "Cajal body" evidence=TAS] [GO:0016363 "nuclear matrix"
evidence=IDA] [GO:0000478 "endonucleolytic cleavage involved in
rRNA processing" evidence=RCA] [GO:0001510 "RNA methylation"
evidence=RCA] InterPro:IPR004154 EMBL:CP002684 GO:GO:0005730
GO:GO:0003676 GO:GO:0015030 GO:GO:0016363 GO:GO:0006364
InterPro:IPR007109 Pfam:PF04427 SMART:SM00879 SUPFAM:SSF52954
PROSITE:PS50833 GO:GO:0005732 EMBL:AC011622 HOGENOM:HOG000172063
KO:K14561 OMA:SHFPHGP EMBL:AC010852 EMBL:AY093002 EMBL:AY114605
EMBL:AY088147 IPI:IPI00528532 PIR:H96662 RefSeq:NP_176564.1
UniGene:At.43038 ProteinModelPortal:Q9S826 SMR:Q9S826 STRING:Q9S826
PRIDE:Q9S826 EnsemblPlants:AT1G63780.1 GeneID:842682
KEGG:ath:AT1G63780 TAIR:At1g63780 InParanoid:Q9S826
PhylomeDB:Q9S826 ProtClustDB:CLSN2682600 ArrayExpress:Q9S826
Genevestigator:Q9S826 Uniprot:Q9S826
Length = 294
Score = 305 (112.4 bits), Expect = 8.2e-37, Sum P(2) = 8.2e-37
Identities = 63/139 (45%), Positives = 87/139 (62%)
Query: 59 FISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPT 118
F EL V PNS RG+ + +IIE A+ DFT +I+VH +R PD L+I LP GPT
Sbjct: 100 FTKELKFVFPNSQRINRGSQVISEIIETARSHDFTDVILVHEHRGVPDGLIISHLPFGPT 159
Query: 119 AHFKLSKLVLRKDI---KNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGR 175
A+F L +V R DI K+ G P L+ NNF T++G RVG +++ +FP +P+ +
Sbjct: 160 AYFGLLNVVTRHDISDKKSIGKMPEQYPHLIFNNFTTQMGQRVGNILKHIFP-APKLDAK 218
Query: 176 RVVTFHNQRDFIFFRHHRY 194
R+VTF NQ D+I FR+H Y
Sbjct: 219 RIVTFSNQSDYISFRNHVY 237
Score = 107 (42.7 bits), Expect = 8.2e-37, Sum P(2) = 8.2e-37
Identities = 20/44 (45%), Positives = 30/44 (68%)
Query: 228 LQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 271
L+E GPRF L+L ++ GT + E EWV +P M+TS++R F+
Sbjct: 249 LKEIGPRFELRLYQVKLGTVEQNEAEIEWVIRPYMNTSKKRKFI 292
>POMBASE|SPAC4F8.04 [details] [associations]
symbol:SPAC4F8.04 "Brix domain protein Rpf1 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000027 "ribosomal
large subunit assembly" evidence=ISO] [GO:0000463 "maturation of
LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=ISO] [GO:0000466 "maturation of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=ISO] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=ISO;IDA]
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0042134 "rRNA primary transcript binding"
evidence=ISO] [GO:0042254 "ribosome biogenesis" evidence=ISO]
InterPro:IPR004154 PomBase:SPAC4F8.04 EMBL:CU329670 GO:GO:0005730
GO:GO:0000463 InterPro:IPR007109 Pfam:PF04427 SMART:SM00879
SUPFAM:SSF52954 PROSITE:PS50833 GO:GO:0042134 GO:GO:0000027
GO:GO:0000466 GO:GO:0005732 eggNOG:COG2136 KO:K14846
HOGENOM:HOG000172062 OMA:IENQRVY OrthoDB:EOG4JT3FB PIR:T38834
RefSeq:NP_593868.1 ProteinModelPortal:O14180 STRING:O14180
EnsemblFungi:SPAC4F8.04.1 GeneID:2543503 KEGG:spo:SPAC4F8.04
NextBio:20804513 Uniprot:O14180
Length = 306
Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
Identities = 76/170 (44%), Positives = 112/170 (65%)
Query: 59 FISELLSVIPNSHYYKR-GTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGP 117
F SELL PN+ + KR G ++ +I E A K+ +T ++V++ +R++ +AL ++ LP+GP
Sbjct: 111 FASELLDCFPNAEFRKRTGDIEVHEIAEAAAKRGYTDLLVLNEDRKKTNALTLVHLPNGP 170
Query: 118 TAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRV 177
+ +F LS L K+I NHG TGHIPEL++NNF+TRLG V R QSLF Q+P+ +GR+V
Sbjct: 171 SFYFTLSNLQTAKEISNHGRSTGHIPELIINNFSTRLGMTVARAFQSLFIQTPQIQGRQV 230
Query: 178 VTFHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITR 227
VT H QRDF+FFR HRY F K S D G ++ T + +++ +
Sbjct: 231 VTIHCQRDFLFFRRHRYAFREK-SNMPDGIGTGLQELGPRFTMRLRMVQK 279
>DICTYBASE|DDB_G0302418 [details] [associations]
symbol:imp4 "U3 small nucleolar ribonucleoprotein
protein" species:44689 "Dictyostelium discoideum" [GO:0034457
"Mpp10 complex" evidence=ISS] [GO:0030515 "snoRNA binding"
evidence=ISS] [GO:0006364 "rRNA processing" evidence=ISS]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR004154
dictyBase:DDB_G0302418 GenomeReviews:CM000152_GR GO:GO:0030515
EMBL:AAFI02000042 GO:GO:0006364 InterPro:IPR007109 Pfam:PF04427
SMART:SM00879 SUPFAM:SSF52954 PROSITE:PS50833 GO:GO:0034457
KO:K14561 OMA:SHFPHGP RefSeq:XP_002649153.1
EnsemblProtists:DDB0302419 GeneID:8623193 KEGG:ddi:DDB_G0302418
ProtClustDB:CLSZ2735584 Uniprot:C7G018
Length = 286
Score = 273 (101.2 bits), Expect = 1.9e-35, Sum P(2) = 1.9e-35
Identities = 55/136 (40%), Positives = 79/136 (58%)
Query: 59 FISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPT 118
F EL + PNS RG + +K++++ + D T +++ H +R EP L+I LP GPT
Sbjct: 99 FTKELRMLFPNSQKMNRGAHVVKELVDACRANDVTDLVIAHEHRGEPVGLVISHLPYGPT 158
Query: 119 AHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVV 178
A+F++ V+ DI P+ P L+ +NF T LG R +++ LFP P+ RRVV
Sbjct: 159 AYFEIKNCVMIHDIDEATPPSLAFPHLIFHNFTTPLGERTENILKYLFPV-PKDDSRRVV 217
Query: 179 TFHNQRDFIFFRHHRY 194
TF N DFI FRHH Y
Sbjct: 218 TFSNDNDFISFRHHIY 233
Score = 126 (49.4 bits), Expect = 1.9e-35, Sum P(2) = 1.9e-35
Identities = 26/55 (47%), Positives = 35/55 (63%)
Query: 217 EKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 271
EK + VI L+E GPRF LKL +Q GT D + EWV+KP M++++ R FL
Sbjct: 234 EKDGYKNVI--LKEIGPRFELKLYKIQLGTLDQDEADLEWVYKPYMNSTKNRLFL 286
>FB|FBgn0039274 [details] [associations]
symbol:CG11920 species:7227 "Drosophila melanogaster"
[GO:0030532 "small nuclear ribonucleoprotein complex" evidence=ISS]
InterPro:IPR004154 InterPro:IPR007109 Pfam:PF04427 SMART:SM00879
SUPFAM:SSF52954 PROSITE:PS50833 eggNOG:COG2136 EMBL:AY060848
ProteinModelPortal:Q95SD3 SMR:Q95SD3 IntAct:Q95SD3 STRING:Q95SD3
PaxDb:Q95SD3 PRIDE:Q95SD3 FlyBase:FBgn0039274 InParanoid:Q95SD3
OrthoDB:EOG4WM39C ArrayExpress:Q95SD3 Bgee:Q95SD3 Uniprot:Q95SD3
Length = 298
Score = 275 (101.9 bits), Expect = 3.0e-33, Sum P(2) = 3.0e-33
Identities = 57/167 (34%), Positives = 93/167 (55%)
Query: 39 WHFLYCLPVYMLFILQRGPA-----FISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFT 93
+H+ C ++ P+ F+ EL +IPN+ RG Y L ++ + + T
Sbjct: 73 YHYAGCEDPKIMLTTSHNPSSRLKMFMKELRLIIPNAQQMNRGNYQLTTLMHACRANNVT 132
Query: 94 SIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATR 153
++VH +R D+L++ LP GPTA F +S +V+R DI + G+ + P L+ NNF T
Sbjct: 133 DFLIVHEHRGILDSLVVCHLPYGPTAFFNISDVVMRHDIPDIGHMSEQKPHLIFNNFKTP 192
Query: 154 LGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETKE 200
+G R ++++ LFP P+ +RV++F N D I FRHH+Y + KE
Sbjct: 193 IGLRTVKILKHLFPV-PKENSQRVMSFLNHNDSIIFRHHQYKYVNKE 238
Score = 103 (41.3 bits), Expect = 3.0e-33, Sum P(2) = 3.0e-33
Identities = 19/42 (45%), Positives = 30/42 (71%)
Query: 228 LQECGPRFTLKLVSLQHGTFDT-KGGEFEWVHKPEMDTSRRR 268
L E GPRF+LKL ++ GT + K + EW+++P M+TS++R
Sbjct: 241 LTEVGPRFSLKLYQIKLGTLENIKAADTEWINRPYMNTSQKR 282
>WB|WBGene00014083 [details] [associations]
symbol:ZK795.3 species:6239 "Caenorhabditis elegans"
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] InterPro:IPR004154 GO:GO:0009792 GO:GO:0006898
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0000003
InterPro:IPR007109 Pfam:PF04427 SMART:SM00879 SUPFAM:SSF52954
PROSITE:PS50833 eggNOG:COG2136 GeneTree:ENSGT00550000074987
HOGENOM:HOG000172063 KO:K14561 OMA:SHFPHGP EMBL:Z83246 PIR:T27998
RefSeq:NP_502404.1 ProteinModelPortal:O62518 SMR:O62518
IntAct:O62518 STRING:O62518 PaxDb:O62518 EnsemblMetazoa:ZK795.3.1
EnsemblMetazoa:ZK795.3.2 GeneID:178207 KEGG:cel:CELE_ZK795.3
UCSC:ZK795.3 CTD:178207 WormBase:ZK795.3 InParanoid:O62518
NextBio:900162 Uniprot:O62518
Length = 292
Score = 286 (105.7 bits), Expect = 7.9e-33, Sum P(2) = 7.9e-33
Identities = 52/136 (38%), Positives = 83/136 (61%)
Query: 59 FISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPT 118
F E+ + PN+ RG YD+K++++ +K +D T +I+ R PD +L+ LP GPT
Sbjct: 95 FAKEMKLIFPNAQRINRGHYDVKQVVQASKAQDSTDLIIFTETRGNPDGMLVCHLPFGPT 154
Query: 119 AHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVV 178
A F ++ +V+R DI N G + P L+ +N ++LGHR +++ LFP P+ +R++
Sbjct: 155 AFFSMANVVMRHDIPNCGTMSEQYPHLIFDNLNSKLGHRFTTILKHLFPV-PKPDSKRII 213
Query: 179 TFHNQRDFIFFRHHRY 194
TF N D+I FRHH Y
Sbjct: 214 TFSNSEDYISFRHHVY 229
Score = 88 (36.0 bits), Expect = 7.9e-33, Sum P(2) = 7.9e-33
Identities = 20/45 (44%), Positives = 27/45 (60%)
Query: 228 LQECGPRFTLKLVSLQHGTFDT-KGGEFEWVHKPEMDTSRRRFFL 271
L E GPRF LK ++ GT +T E EWV + +T+R+R FL
Sbjct: 239 LTEAGPRFELKPYQIKLGTLETLAAAEDEWVLRSYTNTARKRTFL 283
>ZFIN|ZDB-GENE-040718-474 [details] [associations]
symbol:imp4 "IMP4, U3 small nucleolar
ribonucleoprotein, homolog (yeast)" species:7955 "Danio rerio"
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR004154
ZFIN:ZDB-GENE-040718-474 GO:GO:0003676 GO:GO:0030529
InterPro:IPR007109 Pfam:PF04427 SMART:SM00879 SUPFAM:SSF52954
PROSITE:PS50833 CTD:92856 eggNOG:COG2136
GeneTree:ENSGT00550000074987 HOGENOM:HOG000172063
HOVERGEN:HBG056795 KO:K14561 OMA:SHFPHGP OrthoDB:EOG4JHCG8
EMBL:CU041374 EMBL:BC075765 IPI:IPI00488146 RefSeq:NP_001002719.1
UniGene:Dr.19345 STRING:Q6DI25 Ensembl:ENSDART00000076742
GeneID:436992 KEGG:dre:436992 InParanoid:Q6DI25 NextBio:20831411
Uniprot:Q6DI25
Length = 291
Score = 280 (103.6 bits), Expect = 7.9e-33, Sum P(2) = 7.9e-33
Identities = 51/136 (37%), Positives = 82/136 (60%)
Query: 59 FISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPT 118
F E+ + P + RG +++K ++ K + T +++VH R +PD L++ LP GPT
Sbjct: 100 FAKEMKLMFPGAQRMNRGNHEVKTLVHACKSNNVTDLVIVHETRGQPDGLVVCHLPFGPT 159
Query: 119 AHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVV 178
A+F + +V+R D+ + G + P L+ +NF +RLG RV +++ LFP P+ RRV+
Sbjct: 160 AYFTMYNVVMRHDVPDIGTMSEAYPHLIFHNFTSRLGRRVSNILKYLFPV-PKEDSRRVI 218
Query: 179 TFHNQRDFIFFRHHRY 194
TF N D+I FRHH Y
Sbjct: 219 TFANTDDYISFRHHTY 234
Score = 94 (38.1 bits), Expect = 7.9e-33, Sum P(2) = 7.9e-33
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 217 EKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKG-GEFEWVHKPEMDTSRRRFFL 271
+KT + V L E GPRF +KL ++ GT + + + EW H P T+++R FL
Sbjct: 235 KKTDHKNV--ELTEVGPRFEMKLYMIKLGTLENESTADVEWRHHPYTRTAKKRKFL 288
>POMBASE|SPAC19A8.07c [details] [associations]
symbol:SPAC19A8.07c "U3 snoRNP-associated protein Imp4
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0006364 "rRNA processing"
evidence=ISO] [GO:0032040 "small-subunit processome" evidence=ISO]
InterPro:IPR004154 PomBase:SPAC19A8.07c EMBL:CU329670 GO:GO:0005730
GenomeReviews:CU329670_GR GO:GO:0003723 GO:GO:0006364
InterPro:IPR007109 Pfam:PF04427 SMART:SM00879 SUPFAM:SSF52954
PROSITE:PS50833 GO:GO:0032040 eggNOG:COG2136 HOGENOM:HOG000172063
KO:K14561 OMA:SHFPHGP PIR:T37954 RefSeq:NP_593785.1 STRING:O13823
EnsemblFungi:SPAC19A8.07c.1 GeneID:2542446 KEGG:spo:SPAC19A8.07c
OrthoDB:EOG4897WM NextBio:20803502 Uniprot:O13823
Length = 289
Score = 277 (102.6 bits), Expect = 2.3e-31, Sum P(2) = 2.3e-31
Identities = 57/136 (41%), Positives = 78/136 (57%)
Query: 59 FISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPT 118
F E+ +IPNS+ RG + ++E A+ D T I+++H +R PD L+I LP GPT
Sbjct: 101 FAKEVRLLIPNSYRLNRGNIVVGSLVEAARANDITDIVILHEHRGIPDGLVISHLPYGPT 160
Query: 119 AHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVV 178
F L +VLR DI N G + P L+ N ++LG RV + +LFP P+ RVV
Sbjct: 161 LSFSLHNVVLRHDIPNTGTMSEAYPHLIFENLTSKLGKRVKTALSALFPPDPKDTTPRVV 220
Query: 179 TFHNQRDFIFFRHHRY 194
TF N D+I FRHH Y
Sbjct: 221 TFANTDDYISFRHHIY 236
Score = 83 (34.3 bits), Expect = 2.3e-31, Sum P(2) = 2.3e-31
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 218 KTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKP 260
KT +++I L E GPRF +KL + GT D + EW KP
Sbjct: 238 KTGPKQII--LSEAGPRFEMKLFEITLGTVDMVDADVEWKLKP 278
>UNIPROTKB|Q0VD01 [details] [associations]
symbol:IMP4 "U3 small nucleolar ribonucleoprotein protein
IMP4" species:9913 "Bos taurus" [GO:0005730 "nucleolus"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] InterPro:IPR004154
GO:GO:0005730 GO:GO:0030529 GO:GO:0006364 InterPro:IPR007109
Pfam:PF04427 SMART:SM00879 SUPFAM:SSF52954 PROSITE:PS50833
EMBL:BC119909 IPI:IPI00703914 RefSeq:NP_001069085.1 UniGene:Bt.5241
ProteinModelPortal:Q0VD01 STRING:Q0VD01 PRIDE:Q0VD01
Ensembl:ENSBTAT00000004184 GeneID:513405 KEGG:bta:513405 CTD:92856
eggNOG:COG2136 GeneTree:ENSGT00550000074987 HOGENOM:HOG000172063
HOVERGEN:HBG056795 InParanoid:Q0VD01 KO:K14561 OMA:SHFPHGP
OrthoDB:EOG4JHCG8 NextBio:20870839 Uniprot:Q0VD01
Length = 291
Score = 264 (98.0 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 54/136 (39%), Positives = 81/136 (59%)
Query: 59 FISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPT 118
F EL V P + RG +++ ++ K T ++VVH +R P L++ LP GPT
Sbjct: 100 FAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPT 159
Query: 119 AHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVV 178
A+F L +V+R DI + G + P L+++ F++RLG RV +++ LFP P+ RRV+
Sbjct: 160 AYFTLCNVVMRHDIPDLGTASEAKPHLIMHGFSSRLGKRVSDILRYLFPV-PKDDSRRVI 218
Query: 179 TFHNQRDFIFFRHHRY 194
TF NQ D+I FRHH Y
Sbjct: 219 TFANQDDYISFRHHVY 234
Score = 89 (36.4 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 217 EKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKG-GEFEWVHKPEMDTSRRRFFL 271
+KT+ + V L E GPRF LKL ++ GT + + + EW P +T+ +R FL
Sbjct: 235 KKTNHRNV--ELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTAHKRVFL 288
>UNIPROTKB|Q96G21 [details] [associations]
symbol:IMP4 "U3 small nucleolar ribonucleoprotein protein
IMP4" species:9606 "Homo sapiens" [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0006364 "rRNA processing" evidence=NAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR004154 GO:GO:0005730 GO:GO:0030529
GO:GO:0006364 InterPro:IPR007109 Pfam:PF04427 SMART:SM00879
SUPFAM:SSF52954 PROSITE:PS50833 EMBL:AC132479 CTD:92856
eggNOG:COG2136 HOGENOM:HOG000172063 HOVERGEN:HBG056795 KO:K14561
OMA:SHFPHGP OrthoDB:EOG4JHCG8 EMBL:BC010042 IPI:IPI00181116
RefSeq:NP_219484.1 UniGene:Hs.91579 ProteinModelPortal:Q96G21
SMR:Q96G21 STRING:Q96G21 PhosphoSite:Q96G21 DMDM:73621060
PaxDb:Q96G21 PeptideAtlas:Q96G21 PRIDE:Q96G21 DNASU:92856
Ensembl:ENST00000259239 GeneID:92856 KEGG:hsa:92856 UCSC:uc002tra.1
GeneCards:GC02P131099 HGNC:HGNC:30856 MIM:612981 neXtProt:NX_Q96G21
PharmGKB:PA142671656 InParanoid:Q96G21 ChiTaRS:IMP4
GenomeRNAi:92856 NextBio:77904 ArrayExpress:Q96G21 Bgee:Q96G21
CleanEx:HS_IMP4 Genevestigator:Q96G21 GermOnline:ENSG00000136718
Uniprot:Q96G21
Length = 291
Score = 255 (94.8 bits), Expect = 4.2e-30, Sum P(2) = 4.2e-30
Identities = 53/136 (38%), Positives = 79/136 (58%)
Query: 59 FISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPT 118
F EL V P + RG +++ ++ K T ++VVH +R P L++ LP GPT
Sbjct: 100 FAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPT 159
Query: 119 AHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVV 178
A+F L +V+R DI + G + P L+ + F++RLG RV +++ LFP P+ RV+
Sbjct: 160 AYFTLCNVVMRHDIPDLGTMSEAKPHLITHGFSSRLGKRVSDILRYLFPV-PKDDSHRVI 218
Query: 179 TFHNQRDFIFFRHHRY 194
TF NQ D+I FRHH Y
Sbjct: 219 TFANQDDYISFRHHVY 234
Score = 93 (37.8 bits), Expect = 4.2e-30, Sum P(2) = 4.2e-30
Identities = 22/56 (39%), Positives = 32/56 (57%)
Query: 217 EKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKG-GEFEWVHKPEMDTSRRRFFL 271
+KT + V L E GPRF LKL ++ GT + + + EW P +T+R+R FL
Sbjct: 235 KKTDHRNV--ELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFL 288
>MGI|MGI:106572 [details] [associations]
symbol:Imp4 "IMP4, U3 small nucleolar ribonucleoprotein,
homolog (yeast)" species:10090 "Mus musculus" [GO:0003723 "RNA
binding" evidence=ISA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005730 "nucleolus" evidence=ISO;ISA] [GO:0006364 "rRNA
processing" evidence=TAS] [GO:0030519 "snoRNP binding"
evidence=ISA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0042254 "ribosome biogenesis" evidence=IEA] InterPro:IPR004154
MGI:MGI:106572 GO:GO:0005730 GO:GO:0003723 GO:GO:0030529
GO:GO:0030519 GO:GO:0006364 InterPro:IPR007109 Pfam:PF04427
SMART:SM00879 SUPFAM:SSF52954 PROSITE:PS50833 CTD:92856
eggNOG:COG2136 GeneTree:ENSGT00550000074987 HOGENOM:HOG000172063
HOVERGEN:HBG056795 KO:K14561 OMA:SHFPHGP OrthoDB:EOG4JHCG8
EMBL:AF334609 EMBL:AK010504 EMBL:AK013334 EMBL:AK084933
EMBL:AK151176 EMBL:AK152214 EMBL:AK166903 EMBL:BC037602
EMBL:BC069930 IPI:IPI00395166 RefSeq:NP_848716.2 UniGene:Mm.289667
ProteinModelPortal:Q8VHZ7 SMR:Q8VHZ7 STRING:Q8VHZ7
PhosphoSite:Q8VHZ7 PaxDb:Q8VHZ7 PRIDE:Q8VHZ7
Ensembl:ENSMUST00000027303 GeneID:27993 KEGG:mmu:27993
UCSC:uc007aor.2 InParanoid:Q8VHZ7 NextBio:306486 Bgee:Q8VHZ7
Genevestigator:Q8VHZ7 GermOnline:ENSMUSG00000026127 Uniprot:Q8VHZ7
Length = 291
Score = 255 (94.8 bits), Expect = 4.2e-30, Sum P(2) = 4.2e-30
Identities = 53/136 (38%), Positives = 79/136 (58%)
Query: 59 FISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPT 118
F EL V P + RG +++ ++ K T ++VVH +R P L++ LP GPT
Sbjct: 100 FAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPT 159
Query: 119 AHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVV 178
A+F L +V+R DI + G + P L+ + F++RLG RV +++ LFP P+ RV+
Sbjct: 160 AYFTLCNVVMRHDIPDLGTMSEAKPHLITHGFSSRLGKRVSDILRYLFPV-PKDDSHRVI 218
Query: 179 TFHNQRDFIFFRHHRY 194
TF NQ D+I FRHH Y
Sbjct: 219 TFANQDDYISFRHHVY 234
Score = 93 (37.8 bits), Expect = 4.2e-30, Sum P(2) = 4.2e-30
Identities = 22/56 (39%), Positives = 32/56 (57%)
Query: 217 EKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKG-GEFEWVHKPEMDTSRRRFFL 271
+KT + V L E GPRF LKL ++ GT + + + EW P +T+R+R FL
Sbjct: 235 KKTDHRNV--ELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFL 288
>RGD|1308463 [details] [associations]
symbol:Imp4 "IMP4, U3 small nucleolar ribonucleoprotein, homolog
(yeast)" species:10116 "Rattus norvegicus" [GO:0005730 "nucleolus"
evidence=IEA;ISO] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR004154 RGD:1308463 GO:GO:0005730 GO:GO:0030529
GO:GO:0006364 InterPro:IPR007109 Pfam:PF04427 SMART:SM00879
SUPFAM:SSF52954 PROSITE:PS50833 CTD:92856 eggNOG:COG2136
GeneTree:ENSGT00550000074987 HOGENOM:HOG000172063
HOVERGEN:HBG056795 KO:K14561 EMBL:BC087066 IPI:IPI00952233
RefSeq:NP_001009700.1 UniGene:Rn.6698 ProteinModelPortal:Q5PQR5
SMR:Q5PQR5 STRING:Q5PQR5 PRIDE:Q5PQR5 Ensembl:ENSRNOT00000066913
GeneID:316317 KEGG:rno:316317 UCSC:RGD:1308463 InParanoid:Q5PQR5
NextBio:670696 ArrayExpress:Q5PQR5 Genevestigator:Q5PQR5
Uniprot:Q5PQR5
Length = 291
Score = 255 (94.8 bits), Expect = 4.2e-30, Sum P(2) = 4.2e-30
Identities = 53/136 (38%), Positives = 79/136 (58%)
Query: 59 FISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPT 118
F EL V P + RG +++ ++ K T ++VVH +R P L++ LP GPT
Sbjct: 100 FAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPT 159
Query: 119 AHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVV 178
A+F L +V+R DI + G + P L+ + F++RLG RV +++ LFP P+ RV+
Sbjct: 160 AYFTLCNVVMRHDIPDLGTMSEAKPHLITHGFSSRLGKRVSDILRYLFPV-PKDDSHRVI 218
Query: 179 TFHNQRDFIFFRHHRY 194
TF NQ D+I FRHH Y
Sbjct: 219 TFANQDDYISFRHHVY 234
Score = 93 (37.8 bits), Expect = 4.2e-30, Sum P(2) = 4.2e-30
Identities = 22/56 (39%), Positives = 32/56 (57%)
Query: 217 EKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKG-GEFEWVHKPEMDTSRRRFFL 271
+KT + V L E GPRF LKL ++ GT + + + EW P +T+R+R FL
Sbjct: 235 KKTDHRNV--ELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFL 288
>SGD|S000005019 [details] [associations]
symbol:IMP4 "Component of the SSU processome" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0030686 "90S preribosome"
evidence=IDA] [GO:0032040 "small-subunit processome" evidence=IDA]
[GO:0034457 "Mpp10 complex" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=IEA;TAS] [GO:0042134 "rRNA primary transcript
binding" evidence=IPI] [GO:0043047 "single-stranded telomeric DNA
binding" evidence=IDA] [GO:0030515 "snoRNA binding" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0042254
"ribosome biogenesis" evidence=IEA] SGD:S000005019
InterPro:IPR004154 GO:GO:0030515 EMBL:BK006947 EMBL:X86470
GO:GO:0006364 InterPro:IPR007109 Pfam:PF04427 SMART:SM00879
SUPFAM:SSF52954 PROSITE:PS50833 GO:GO:0042134 GO:GO:0032040
GO:GO:0043047 RefSeq:NP_014331.3 GeneID:855656 KEGG:sce:YNL068C
GO:GO:0034457 eggNOG:COG2136 GeneTree:ENSGT00550000074987
HOGENOM:HOG000172063 KO:K14561 OMA:SHFPHGP OrthoDB:EOG4897WM
EMBL:Z71351 PIR:S53904 RefSeq:NP_014324.3 ProteinModelPortal:P53941
SMR:P53941 DIP:DIP-4362N IntAct:P53941 MINT:MINT-497481
STRING:P53941 PaxDb:P53941 PeptideAtlas:P53941 EnsemblFungi:YNL075W
GeneID:855649 KEGG:sce:YNL075W CYGD:YNL075w NextBio:979893
Genevestigator:P53941 GermOnline:YNL075W Uniprot:P53941
Length = 290
Score = 261 (96.9 bits), Expect = 5.9e-29, Sum P(2) = 5.9e-29
Identities = 55/142 (38%), Positives = 80/142 (56%)
Query: 59 FISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPT 118
F E+ + PN+ RG Y + +++ KK T ++V+H +R P +L I P GPT
Sbjct: 103 FAKEIKLLFPNAVRLNRGNYVMPNLVDACKKSGTTDLVVLHEHRGVPTSLTISHFPHGPT 162
Query: 119 AHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVV 178
A F L +V+R DI N GN + P L+ +NF T LG RV +++ LF P+ RV+
Sbjct: 163 AQFSLHNVVMRHDIINAGNQSEVNPHLIFDNFTTALGKRVVCILKHLFNAGPKKDSERVI 222
Query: 179 TFHNQRDFIFFRHHRYIFETKE 200
TF N+ DFI R H Y+ T+E
Sbjct: 223 TFANRGDFISVRQHVYV-RTRE 243
Score = 76 (31.8 bits), Expect = 5.9e-29, Sum P(2) = 5.9e-29
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 228 LQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 271
+ E GPRF ++L L+ GT + K + EW + + T+ ++ +L
Sbjct: 247 IAEVGPRFEMRLFELRLGTLENKDADVEWQLRRFIRTANKKDYL 290
>CGD|CAL0000877 [details] [associations]
symbol:IMP4 species:5476 "Candida albicans" [GO:0032040
"small-subunit processome" evidence=IEA] [GO:0034457 "Mpp10
complex" evidence=IEA] [GO:0030515 "snoRNA binding" evidence=IEA]
[GO:0042134 "rRNA primary transcript binding" evidence=IEA]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=IEA]
InterPro:IPR004154 CGD:CAL0000877 InterPro:IPR007109 Pfam:PF04427
SMART:SM00879 SUPFAM:SSF52954 PROSITE:PS50833 EMBL:AACQ01000109
EMBL:AACQ01000108 eggNOG:COG2136 HOGENOM:HOG000172063 KO:K14561
RefSeq:XP_714190.1 RefSeq:XP_714230.1 STRING:Q59X74 GeneID:3644138
GeneID:3644172 KEGG:cal:CaO19.603 KEGG:cal:CaO19.8236
Uniprot:Q59X74
Length = 283
Score = 249 (92.7 bits), Expect = 1.4e-27, Sum P(2) = 1.4e-27
Identities = 52/143 (36%), Positives = 79/143 (55%)
Query: 59 FISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPT 118
F E+ + PNS RG Y + ++ + + +I++H +R P +L + P GPT
Sbjct: 96 FSKEIKLMFPNSLKLNRGNYIISDLVSTCNRVQVSDMILLHEHRGVPSSLTVSHFPHGPT 155
Query: 119 AHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVV 178
A F L + LR D+ N GN + P L+ NF + LG RV +++Q LFP + RV+
Sbjct: 156 AIFTLHNVKLRHDLPNLGNVSESYPHLIFENFQSDLGKRVVKILQHLFPPGVKKDSSRVI 215
Query: 179 TFHNQRDFIFFRHHRYIFETKES 201
TF N D+I RHH Y+ +TK+S
Sbjct: 216 TFVNNDDYISVRHHVYV-KTKDS 237
Score = 75 (31.5 bits), Expect = 1.4e-27, Sum P(2) = 1.4e-27
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 228 LQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 271
L E GPRF ++L ++ G D K + EW + + T+ R+ +L
Sbjct: 240 LSEIGPRFEMRLYEIRLGLPDNKDADVEWQMRRFIRTANRKNYL 283
>UNIPROTKB|G4ND46 [details] [associations]
symbol:MGG_00977 "U3 small nucleolar ribonucleoprotein
IMP4" species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR004154 EMBL:CM001235 GO:GO:0003676
GO:GO:0030529 InterPro:IPR007109 Pfam:PF04427 SMART:SM00879
SUPFAM:SSF52954 PROSITE:PS50833 KO:K14561 RefSeq:XP_003717972.1
ProteinModelPortal:G4ND46 EnsemblFungi:MGG_00977T0 GeneID:2674209
KEGG:mgr:MGG_00977 Uniprot:G4ND46
Length = 295
Score = 199 (75.1 bits), Expect = 1.6e-23, Sum P(2) = 1.6e-23
Identities = 47/151 (31%), Positives = 75/151 (49%)
Query: 58 AFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGP 117
AF E+ ++P + RG L +++ + + I+++H R P AL I +P GP
Sbjct: 99 AFAKEIRLLLPTAIRLNRGNLILPELVRSVQAAGLSDIVLLHERRGTPTALTISHMPHGP 158
Query: 118 TAHFKLSKLVLRKDIKN--HGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGR 175
T F L ++LR DI G + P LV + F ++LG R+ ++++ LFP +
Sbjct: 159 TVSFSLHNVLLRHDIPGSVRGTVSEAYPHLVFDGFTSKLGQRIVKVLKHLFPPREPITNK 218
Query: 176 -----RVVTFHNQRDFIFFRHHRYIFETKES 201
RV+TF N D I RHH ++ ES
Sbjct: 219 AKMSNRVITFKNIDDVIEVRHHVFVRTGHES 249
Score = 86 (35.3 bits), Expect = 1.6e-23, Sum P(2) = 1.6e-23
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 218 KTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 271
+T + V L E GPR ++K+ ++ GT + K G+ EW TSR++ +L
Sbjct: 244 RTGHESV--ELAEVGPRMSMKVFEIRGGTLENKDGDVEWHLSQYTRTSRKKNYL 295
>ASPGD|ASPL0000059866 [details] [associations]
symbol:AN0647 species:162425 "Emericella nidulans"
[GO:0032040 "small-subunit processome" evidence=IEA] [GO:0034457
"Mpp10 complex" evidence=IEA] [GO:0030515 "snoRNA binding"
evidence=IEA] [GO:0042134 "rRNA primary transcript binding"
evidence=IEA] [GO:0043047 "single-stranded telomeric DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0004812 "aminoacyl-tRNA ligase
activity" evidence=IEA] InterPro:IPR004154 EMBL:BN001308
GO:GO:0003676 GO:GO:0030529 InterPro:IPR007109 Pfam:PF04427
SMART:SM00879 SUPFAM:SSF52954 PROSITE:PS50833
EnsemblFungi:CADANIAT00002029 OMA:NESAADI Uniprot:C8VS07
Length = 144
Score = 170 (64.9 bits), Expect = 5.6e-19, Sum P(2) = 5.6e-19
Identities = 39/91 (42%), Positives = 52/91 (57%)
Query: 108 LLIIGLPDGPTAHFKLSKLVLRKDIKN--HGNPTGHIPELVLNNFATRLGHRVGRLIQSL 165
+ I LP GPTA F L +VLR DI N G + P L+ F T+LG RV ++++ L
Sbjct: 1 MTISHLPHGPTASFSLHNVVLRADIPNAARGTVSESYPHLIFEGFKTKLGKRVVQILKHL 60
Query: 166 FPQSPEFR-GRRVVTFHNQRDFIFFRHHRYI 195
FP + G RVVTF N+ D I RHH ++
Sbjct: 61 FPPREAGKVGNRVVTFVNKEDSIEVRHHVFV 91
Score = 73 (30.8 bits), Expect = 5.6e-19, Sum P(2) = 5.6e-19
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 228 LQECGPRFTLKLVSLQHGTFDTKG--GEFEWVHKPEMDTSRRRFFL 271
L E GPR T++L ++ G+ + KG G+ EW TSR++ +L
Sbjct: 100 LAEVGPRMTMRLFEIRGGSLE-KGSSGDVEWALTQYTRTSRKKDYL 144
>GENEDB_PFALCIPARUM|PF08_0055 [details] [associations]
symbol:PF08_0055 "u3 small nucleolar
ribonucleoprotein protein" species:5833 "Plasmodium falciparum"
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
InterPro:IPR004154 GO:GO:0003676 GO:GO:0006396 InterPro:IPR007109
Pfam:PF04427 SMART:SM00879 SUPFAM:SSF52954 PROSITE:PS50833
GO:GO:0005732 EMBL:AL844507 HOGENOM:HOG000172063 KO:K14561
RefSeq:XP_001349337.1 ProteinModelPortal:Q8IB23 IntAct:Q8IB23
MINT:MINT-1550495 EnsemblProtists:PF08_0055:mRNA GeneID:2655255
KEGG:pfa:PF08_0055 EuPathDB:PlasmoDB:PF3D7_0818800 OMA:KRIMNIF
ProtClustDB:CLSZ2433740 Uniprot:Q8IB23
Length = 362
Score = 175 (66.7 bits), Expect = 9.3e-16, Sum P(2) = 9.3e-16
Identities = 40/127 (31%), Positives = 65/127 (51%)
Query: 59 FISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPT 118
F EL +IPNS RG+Y +K I+ +A+K + T +I++H + P L+I LP GPT
Sbjct: 98 FAKELKLIIPNSEKINRGSYFIKDILNFARKNNITDVIILHEYKGIPRNLIICHLPFGPT 157
Query: 119 AHFKLSKLVLRKDIKNH-GNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRV 177
+ +R + N + P L+ +NF + LG R+ + + LFP +R
Sbjct: 158 LFCTIKDCKMRCEFNEKIDNISLCTPHLIFHNFHSDLGKRIMNIFKYLFPPVTMRTNKRK 217
Query: 178 VTFHNQR 184
+ HN +
Sbjct: 218 MPKHNSQ 224
Score = 75 (31.5 bits), Expect = 9.3e-16, Sum P(2) = 9.3e-16
Identities = 13/50 (26%), Positives = 30/50 (60%)
Query: 217 EKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMDTSR 266
EK +++ L+E GPRF+ + + T D+ ++E++++P M++ +
Sbjct: 311 EKNQTNEIV--LKEIGPRFSFVVYKINKETLDSLNEDYEYIYRPFMNSRK 358
>UNIPROTKB|Q8IB23 [details] [associations]
symbol:PF08_0055 "U3 small nucleolar ribonucleoprotein
protein, putative" species:36329 "Plasmodium falciparum 3D7"
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
InterPro:IPR004154 GO:GO:0003676 GO:GO:0006396 InterPro:IPR007109
Pfam:PF04427 SMART:SM00879 SUPFAM:SSF52954 PROSITE:PS50833
GO:GO:0005732 EMBL:AL844507 HOGENOM:HOG000172063 KO:K14561
RefSeq:XP_001349337.1 ProteinModelPortal:Q8IB23 IntAct:Q8IB23
MINT:MINT-1550495 EnsemblProtists:PF08_0055:mRNA GeneID:2655255
KEGG:pfa:PF08_0055 EuPathDB:PlasmoDB:PF3D7_0818800 OMA:KRIMNIF
ProtClustDB:CLSZ2433740 Uniprot:Q8IB23
Length = 362
Score = 175 (66.7 bits), Expect = 9.3e-16, Sum P(2) = 9.3e-16
Identities = 40/127 (31%), Positives = 65/127 (51%)
Query: 59 FISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPT 118
F EL +IPNS RG+Y +K I+ +A+K + T +I++H + P L+I LP GPT
Sbjct: 98 FAKELKLIIPNSEKINRGSYFIKDILNFARKNNITDVIILHEYKGIPRNLIICHLPFGPT 157
Query: 119 AHFKLSKLVLRKDIKNH-GNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRV 177
+ +R + N + P L+ +NF + LG R+ + + LFP +R
Sbjct: 158 LFCTIKDCKMRCEFNEKIDNISLCTPHLIFHNFHSDLGKRIMNIFKYLFPPVTMRTNKRK 217
Query: 178 VTFHNQR 184
+ HN +
Sbjct: 218 MPKHNSQ 224
Score = 75 (31.5 bits), Expect = 9.3e-16, Sum P(2) = 9.3e-16
Identities = 13/50 (26%), Positives = 30/50 (60%)
Query: 217 EKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMDTSR 266
EK +++ L+E GPRF+ + + T D+ ++E++++P M++ +
Sbjct: 311 EKNQTNEIV--LKEIGPRFSFVVYKINKETLDSLNEDYEYIYRPFMNSRK 358
>MGI|MGI:2178445 [details] [associations]
symbol:Ppan "peter pan homolog (Drosophila)" species:10090
"Mus musculus" [GO:0001560 "regulation of cell growth by
extracellular stimulus" evidence=ISO] [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO] InterPro:IPR004154 MGI:MGI:2178445 GO:GO:0005730
EMBL:CH466522 InterPro:IPR007109 Pfam:PF04427 SMART:SM00879
SUPFAM:SSF52954 PROSITE:PS50833 GO:GO:0001560 KO:K14859
eggNOG:NOG272199 OrthoDB:EOG4P2Q1Q CTD:56342
GeneTree:ENSGT00530000064158 HOGENOM:HOG000210038
HOVERGEN:HBG026954 OMA:RRVMEPF EMBL:AK039027 EMBL:BC014688
IPI:IPI00130510 RefSeq:NP_663585.2 UniGene:Mm.2930
ProteinModelPortal:Q91YU8 STRING:Q91YU8 PhosphoSite:Q91YU8
PaxDb:Q91YU8 PRIDE:Q91YU8 Ensembl:ENSMUST00000004203 GeneID:235036
KEGG:mmu:235036 InParanoid:Q8BYM4 NextBio:382469 Bgee:Q91YU8
CleanEx:MM_PPAN Genevestigator:Q91YU8 GermOnline:ENSMUSG00000004100
Uniprot:Q91YU8
Length = 470
Score = 88 (36.0 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 29/97 (29%), Positives = 45/97 (46%)
Query: 80 LKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDI------- 132
LK + A T +++ T L ++ LP GPT F++SK L +D+
Sbjct: 70 LKDCVAVAGPLGVTHFLIL-TKTDNSVYLKLMRLPGGPTLTFQISKYTLIRDVVSSLRRH 128
Query: 133 KNHGNPTGHIPELVLNNFATRLGH--RVGRLIQSLFP 167
+ H H P LVLN+F + H + + Q+LFP
Sbjct: 129 RMHEQQFNHPPLLVLNSFGPQGMHIKLMATMFQNLFP 165
Score = 73 (30.8 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 210 KAKDAKSEKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKPE 261
+A + +QQ + RL E GPR TL+L+ +Q G + +VHK E
Sbjct: 255 QAVAGRGNMQAQQSAV-RLTEIGPRMTLQLIKIQEGVGNGNVLFHSFVHKTE 305
>UNIPROTKB|G4NCH9 [details] [associations]
symbol:MGG_01078 "Ribosome biogenesis protein BRX1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0000027 "ribosomal
large subunit assembly" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0008097 "5S rRNA binding" evidence=ISS]
[GO:0042134 "rRNA primary transcript binding" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] InterPro:IPR004154
GO:GO:0005730 EMBL:CM001235 GO:GO:0030687 KO:K14820
InterPro:IPR007109 InterPro:IPR026532 PANTHER:PTHR13634
Pfam:PF04427 SMART:SM00879 SUPFAM:SSF52954 PROSITE:PS50833
GO:GO:0042134 GO:GO:0000027 GO:GO:0008097 RefSeq:XP_003717860.1
EnsemblFungi:MGG_01078T0 GeneID:2675248 KEGG:mgr:MGG_01078
Uniprot:G4NCH9
Length = 313
Score = 110 (43.8 bits), Expect = 0.00096, P = 0.00096
Identities = 59/232 (25%), Positives = 103/232 (44%)
Query: 49 MLFILQRGPAF-----ISELLSVIPNSHYYKRGTYDLK----KIIEYAKKKDFTSIIVVH 99
+L + RG F +++L +++P H K +D K ++ E A+ + +++
Sbjct: 31 VLILSSRGVTFRHRHLLNDLAAMLP--HGKKDVKFDSKSKLYQLNELAELYNCNNVLFFE 88
Query: 100 TNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPT-GHIPELVLNNFATRLGHRV 158
+ + + +P+GPT F L L ++ GN G P L ++ + H
Sbjct: 89 ARKGQDLYVWASKVPNGPTVKFHLQNLHTMDELNFTGNCLKGSRPVLSFDSAFDKDPHY- 147
Query: 159 GRLIQSLFPQS---PEFRGR------RVVTFHNQRDFIFFRHHRYIFETKESKGSDA-NG 208
R+I+ LF PE + V+ F I+ R+++ I E +++KG D +G
Sbjct: 148 -RVIKELFLHIFGVPEGARKSKPFVDHVMGFSIADGKIWVRNYQ-INEVEKTKGEDGEDG 205
Query: 209 KKAKDAKSEKTSQQK-VITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHK 259
+ K+ KS + K L E GPRF L V +Q G F GG + +K
Sbjct: 206 EAKKEKKSSRKPDAKDTDINLVEIGPRFVLTPVVIQEGAF---GGPIIYENK 254
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.326 0.141 0.442 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 271 271 0.00098 114 3 11 22 0.41 33
32 0.40 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 36
No. of states in DFA: 617 (66 KB)
Total size of DFA: 220 KB (2121 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 24.07u 0.15s 24.22t Elapsed: 00:00:01
Total cpu time: 24.07u 0.15s 24.22t Elapsed: 00:00:01
Start: Tue May 21 02:17:07 2013 End: Tue May 21 02:17:08 2013