BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024165
(271 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2W7S|A Chain A, Spla Serine Protease Of Staphylococcus Aureus (1.8a)
pdb|2W7S|B Chain B, Spla Serine Protease Of Staphylococcus Aureus (1.8a)
pdb|2W7S|C Chain C, Spla Serine Protease Of Staphylococcus Aureus (1.8a)
pdb|2W7S|D Chain D, Spla Serine Protease Of Staphylococcus Aureus (1.8a)
pdb|2W7U|A Chain A, Spla Serine Protease Of Staphylococcus Aureus (2.4a)
pdb|2W7U|B Chain B, Spla Serine Protease Of Staphylococcus Aureus (2.4a)
pdb|2W7U|C Chain C, Spla Serine Protease Of Staphylococcus Aureus (2.4a)
pdb|2W7U|D Chain D, Spla Serine Protease Of Staphylococcus Aureus (2.4a)
pdb|3UFA|A Chain A, Crystal Structure Of The Staphylococcal Serine Protease
Spla In Complex With A Specific Phosphonate Inhibitor
pdb|3UFA|B Chain B, Crystal Structure Of The Staphylococcal Serine Protease
Spla In Complex With A Specific Phosphonate Inhibitor
Length = 200
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 20/67 (29%)
Query: 76 GTYDLKKIIEYAKKKDFTSIIVVHTNRRE-------------------PDALLIIGLPDG 116
G YD+K I+EY K+D +I+ VH E D + +IG P G
Sbjct: 63 GNYDVKDIVEYPGKEDL-AIVHVHETSTEGLNFNKNVSYTKFADGAKVKDRISVIGYPKG 121
Query: 117 PTAHFKL 123
+K+
Sbjct: 122 AQTKYKM 128
>pdb|3QT3|A Chain A, Analysis Of A New Family Of Widely Distributed
Metal-Independent Alpha-Mannosidases Provides Unique
Insight Into The Processing Of N- Linked Glycans,
Clostridium Perfringens Cpe0426 Apo-Structure
pdb|3QT9|A Chain A, Analysis Of A New Family Of Widely Distributed
Metal-Independent Alpha Mannosidases Provides Unique
Insight Into The Processing Of N-Linked Glycans,
Clostridium Perfringens Cpe0426 Complexed With
Alpha-1,6- Linked 1-Thio-Alpha-Mannobiose
Length = 427
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 171 EFRGRRVVTFHNQRDFIFFRHHRYIFETKESKG 203
E++G + N R FI +++R+ FE K +KG
Sbjct: 313 EYKGIEDEVYQNTRKFILSKNNRFFFEGKAAKG 345
>pdb|2NVP|A Chain A, X-Ray Crystal Structure Of Protein Cpf_0428 From
Clostridium Perfringens. Northeast Structural Genomics
Consortium Target Cpr63
Length = 435
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 171 EFRGRRVVTFHNQRDFIFFRHHRYIFETKESKG 203
E++G + N R FI +++R+ FE K +KG
Sbjct: 313 EYKGIEDEVYQNTRKFILSKNNRFFFEGKAAKG 345
>pdb|2CXH|A Chain A, Crystal Structure Of Probable Ribosomal Biogenesis Protein
From Aeropyrum Pernix K1
Length = 217
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 58 AFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGP 117
+F+ +L + IP + + RG Y +++ A + I+VV R P + + + +GP
Sbjct: 50 SFVKDLSATIPGAFRFTRGHYSXEELAREAIIRGADRIVVVGERRGNPGIIRVYAV-EGP 108
>pdb|2VID|A Chain A, Serine Protease Splb From Staphylococcus Aureus At 1.8a
Resolution
pdb|2VID|B Chain B, Serine Protease Splb From Staphylococcus Aureus At 1.8a
Resolution
Length = 204
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 60 ISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIV 97
+ + ++ PNS G Y +KKII Y K+D + I V
Sbjct: 46 VGDRITAHPNSDKGNGGIYSIKKIINYPGKEDVSVIQV 83
>pdb|2YL9|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL9|B Chain B, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL9|C Chain C, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL9|D Chain D, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
Length = 457
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 9/62 (14%)
Query: 79 DLKKIIEYAKKKDFTSIIVVHTNRREPDALLI----IGLPDGPTAHF-KLSKLVLRKDIK 133
++ ++IEYAK KD I +++ DA+L+ +G+ + P AHF K+SK + D+K
Sbjct: 113 EVTELIEYAKSKDIGLIPAINS-PGHMDAMLVAMEKLGIKN-PQAHFDKVSKTTM--DLK 168
Query: 134 NH 135
N
Sbjct: 169 NE 170
>pdb|2YLA|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YLA|B Chain B, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YLA|C Chain C, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YLA|D Chain D, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
Length = 442
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 9/62 (14%)
Query: 79 DLKKIIEYAKKKDFTSIIVVHTNRREPDALLI----IGLPDGPTAHF-KLSKLVLRKDIK 133
++ ++IEYAK KD I +++ DA+L+ +G+ + P AHF K+SK + D+K
Sbjct: 96 EVTELIEYAKSKDIGLIPAINS-PGHMDAMLVAMEKLGIKN-PQAHFDKVSKTTM--DLK 151
Query: 134 NH 135
N
Sbjct: 152 NE 153
>pdb|2YL5|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL5|B Chain B, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL5|C Chain C, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL5|D Chain D, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
Length = 442
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 9/62 (14%)
Query: 79 DLKKIIEYAKKKDFTSIIVVHTNRREPDALLI----IGLPDGPTAHF-KLSKLVLRKDIK 133
++ ++IEYAK KD I +++ DA+L+ +G+ + P AHF K+SK + D+K
Sbjct: 96 EVTELIEYAKSKDIGLIPAINS-PGHMDAMLVAMEKLGIKN-PQAHFDKVSKTTM--DLK 151
Query: 134 NH 135
N
Sbjct: 152 NE 153
>pdb|3OZ7|A Chain A, Crystal Structure Of 3-Phosphopglycerate Kinase Of
Plasmodium Falciparum
pdb|3OZ7|B Chain B, Crystal Structure Of 3-Phosphopglycerate Kinase Of
Plasmodium Falciparum
Length = 417
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 183 QRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQEC 231
+ I + R+ E +E KG DANG K K K + Q +T+L +
Sbjct: 114 ENSVILLENLRFHIE-EEGKGVDANGNKVKANKEDVEKFQNDLTKLADV 161
>pdb|2E55|A Chain A, Structure Of Aq2163 Protein From Aquifex Aeolicus
pdb|2E55|B Chain B, Structure Of Aq2163 Protein From Aquifex Aeolicus
pdb|2E55|C Chain C, Structure Of Aq2163 Protein From Aquifex Aeolicus
pdb|2E55|D Chain D, Structure Of Aq2163 Protein From Aquifex Aeolicus
Length = 208
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 32 TWAWDNLWHFLYCLPVYMLFILQRGPAFISELLSVIPNSHY----YKRGTYDLKKIIEYA 87
TW + +++L + + IL+ G +F+ L V+PN+ KR L+ I Y+
Sbjct: 55 TWIGNKRFNYLNEEEIVFVPILRAGLSFLEGALQVVPNAKVGFLGIKRNEETLESHIYYS 114
Query: 88 KKKDFTSIIVV 98
+ + IVV
Sbjct: 115 RLPELKGKIVV 125
>pdb|3OZA|A Chain A, Crystal Structure Of Plasmodium Falciparum
3-Phosphoglycerate Kinase
pdb|3OZA|B Chain B, Crystal Structure Of Plasmodium Falciparum
3-Phosphoglycerate Kinase
pdb|3OZA|C Chain C, Crystal Structure Of Plasmodium Falciparum
3-Phosphoglycerate Kinase
Length = 424
Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 183 QRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQEC 231
+ I + R+ E +E KG DANG K K K + Q +T+L +
Sbjct: 120 ENSVILLENLRFHIE-EEGKGVDANGNKVKANKEDVEKFQNDLTKLADV 167
>pdb|1LTK|A Chain A, Crystal Structure Of Phosphoglycerate Kinase From
Plasmodium Falciparum, In The Open Conformation
pdb|1LTK|B Chain B, Crystal Structure Of Phosphoglycerate Kinase From
Plasmodium Falciparum, In The Open Conformation
pdb|1LTK|C Chain C, Crystal Structure Of Phosphoglycerate Kinase From
Plasmodium Falciparum, In The Open Conformation
Length = 425
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 183 QRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQEC 231
+ I + R+ E +E KG DANG K K K + Q +T+L +
Sbjct: 121 ENSVILLENLRFHIE-EEGKGVDANGNKVKANKEDVEKFQNDLTKLADV 168
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.141 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,531,269
Number of Sequences: 62578
Number of extensions: 345389
Number of successful extensions: 871
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 863
Number of HSP's gapped (non-prelim): 16
length of query: 271
length of database: 14,973,337
effective HSP length: 97
effective length of query: 174
effective length of database: 8,903,271
effective search space: 1549169154
effective search space used: 1549169154
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)