BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024165
(271 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5R631|RPF1_PONAB Ribosome production factor 1 OS=Pongo abelii GN=RPF1 PE=2 SV=1
Length = 349
Score = 226 bits (577), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 116/215 (53%), Positives = 147/215 (68%), Gaps = 26/215 (12%)
Query: 59 FISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPT 118
+L +VIPNSH Y R LKKII +DFT +IV++ +R+ P+ L++ LP+GPT
Sbjct: 159 LCEQLSTVIPNSHVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPT 218
Query: 119 AHFKLSKLVLRKDIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRV 177
AHFK+S + LRK+IK G +PT HIPE++LNNF TRLGH +GR+ SLFP +P+F GR+V
Sbjct: 219 AHFKMSSVRLRKEIKRRGKDPTEHIPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQV 278
Query: 178 VTFHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTL 237
TFHNQRD+IFFR HRYIF +++ G +QE GPRFTL
Sbjct: 279 ATFHNQRDYIFFRFHRYIFRSEKKVG------------------------IQELGPRFTL 314
Query: 238 KLVSLQHGTFDTKGGEFEWVHKP-EMDTSRRRFFL 271
KL SLQ GTFD+K GE+EWVHKP EMDTSRR+F L
Sbjct: 315 KLRSLQKGTFDSKYGEYEWVHKPREMDTSRRKFHL 349
>sp|Q9H9Y2|RPF1_HUMAN Ribosome production factor 1 OS=Homo sapiens GN=RPF1 PE=1 SV=2
Length = 349
Score = 226 bits (577), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 116/215 (53%), Positives = 147/215 (68%), Gaps = 26/215 (12%)
Query: 59 FISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPT 118
+L +VIPNSH Y R LKKII +DFT +IV++ +R+ P+ L++ LP+GPT
Sbjct: 159 LCEQLSTVIPNSHVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPT 218
Query: 119 AHFKLSKLVLRKDIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRV 177
AHFK+S + LRK+IK G +PT HIPE++LNNF TRLGH +GR+ SLFP +P+F GR+V
Sbjct: 219 AHFKMSSVRLRKEIKRRGKDPTEHIPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQV 278
Query: 178 VTFHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTL 237
TFHNQRD+IFFR HRYIF +++ G +QE GPRFTL
Sbjct: 279 ATFHNQRDYIFFRFHRYIFRSEKKVG------------------------IQELGPRFTL 314
Query: 238 KLVSLQHGTFDTKGGEFEWVHKP-EMDTSRRRFFL 271
KL SLQ GTFD+K GE+EWVHKP EMDTSRR+F L
Sbjct: 315 KLRSLQKGTFDSKYGEYEWVHKPREMDTSRRKFHL 349
>sp|Q7TND5|RPF1_MOUSE Ribosome production factor 1 OS=Mus musculus GN=Rpf1 PE=2 SV=2
Length = 349
Score = 225 bits (573), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 114/215 (53%), Positives = 148/215 (68%), Gaps = 26/215 (12%)
Query: 59 FISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPT 118
+L +VIP+SH Y R LKKII +DFT +IV++ +R+ P+ L++ LP+GPT
Sbjct: 159 LCEQLSTVIPDSHVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPT 218
Query: 119 AHFKLSKLVLRKDIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRV 177
AHFK+S + LRK+IK G +PT H+PE++LNNF TRLGH +GR+ SLFP +P+F GR+V
Sbjct: 219 AHFKMSSVRLRKEIKRRGKDPTEHVPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQV 278
Query: 178 VTFHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTL 237
TFHNQRD+IFFR HRYIF++++ G +QE GPRFTL
Sbjct: 279 ATFHNQRDYIFFRFHRYIFKSEKKVG------------------------IQELGPRFTL 314
Query: 238 KLVSLQHGTFDTKGGEFEWVHKP-EMDTSRRRFFL 271
KL SLQ GTFD+K GE+EWVHKP EMDTSRR+F L
Sbjct: 315 KLRSLQKGTFDSKYGEYEWVHKPREMDTSRRKFHL 349
>sp|Q8AVP1|RPF1_XENLA Ribosome production factor 1 OS=Xenopus laevis GN=rpf1 PE=2 SV=1
Length = 343
Score = 217 bits (553), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 111/219 (50%), Positives = 145/219 (66%), Gaps = 26/219 (11%)
Query: 55 RGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLP 114
R F +L S+IPNS Y R LKKII +D+T ++V++ +R+ P+ L++ LP
Sbjct: 149 RSVRFTEQLSSIIPNSDVYYRRGLALKKIIPQCVSRDYTDLLVINEDRKVPNGLVLCHLP 208
Query: 115 DGPTAHFKLSKLVLRKDIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFR 173
DGPTAHFK+S + LRK++K G PT H PE++LNNF TRLGH +GR+ SL+P P F
Sbjct: 209 DGPTAHFKISNVRLRKEMKRKGKEPTEHKPEVILNNFTTRLGHSIGRMFASLYPHDPHFV 268
Query: 174 GRRVVTFHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGP 233
GR+V TFHNQRD+IFFR+HRY+F++++ G +QE GP
Sbjct: 269 GRQVATFHNQRDYIFFRYHRYLFKSEKKVG------------------------IQELGP 304
Query: 234 RFTLKLVSLQHGTFDTKGGEFEWVHKP-EMDTSRRRFFL 271
RFTLKL SLQ GTFD+K GE+EWVHK EMDTSRR+F L
Sbjct: 305 RFTLKLRSLQKGTFDSKYGEYEWVHKRHEMDTSRRKFHL 343
>sp|P54073|YUY1_CAEEL Brix domain-containing protein F44G4.1 OS=Caenorhabditis elegans
GN=F44G4.1 PE=4 SV=4
Length = 384
Score = 215 bits (547), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 109/214 (50%), Positives = 139/214 (64%), Gaps = 24/214 (11%)
Query: 59 FISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPT 118
F EL IPNS + R LK IIE AK+++FT ++VVH +R++P+ ++ LP+GPT
Sbjct: 194 FCFELQKCIPNSEIFTRKNVLLKTIIEQAKEREFTDLLVVHEDRKKPNGIIFCHLPEGPT 253
Query: 119 AHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVV 178
A+FK++ L +D+K G T H PE++LNNF TRLGH + R++ LFP P+F GRRVV
Sbjct: 254 AYFKINSLTFTQDLKKFGESTSHFPEVILNNFNTRLGHNIARMLACLFPHDPKFTGRRVV 313
Query: 179 TFHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLK 238
TFHNQRD+IFFRHHRY F+ + SK + L E GPRFTL+
Sbjct: 314 TFHNQRDYIFFRHHRYEFKKEGSKAA-----------------------LLELGPRFTLR 350
Query: 239 LVSLQHGTFDTKGGEFEWVHKP-EMDTSRRRFFL 271
L LQ GTFD K GEFEWV K EM+TSRRRFFL
Sbjct: 351 LKWLQKGTFDAKWGEFEWVLKRHEMETSRRRFFL 384
>sp|Q6IQU6|RPF1_DANRE Ribosome production factor 1 OS=Danio rerio GN=rpf1 PE=2 SV=1
Length = 330
Score = 213 bits (541), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 109/215 (50%), Positives = 144/215 (66%), Gaps = 26/215 (12%)
Query: 59 FISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPT 118
F +L +VIP+++ Y R LKK+I + FT ++V++ +R+ P+ +++ LPDGPT
Sbjct: 140 FCDQLATVIPHAYVYYRRGLALKKVIPQCISRGFTYLMVINEDRKVPNGMVLCHLPDGPT 199
Query: 119 AHFKLSKLVLRKDIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRV 177
AHFK+S + LRK++K G NPT H PE++LNNF TRLGH +GRL +LFP P+F GR+V
Sbjct: 200 AHFKVSSVRLRKEMKRRGKNPTEHSPEVILNNFTTRLGHSIGRLFAALFPHDPQFVGRQV 259
Query: 178 VTFHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTL 237
TFHNQRDFIFFR HRYIF+ ++ G +QE GPRFTL
Sbjct: 260 ATFHNQRDFIFFRFHRYIFKNEKKVG------------------------IQELGPRFTL 295
Query: 238 KLVSLQHGTFDTKGGEFEWVHKP-EMDTSRRRFFL 271
KL SLQ GTFD+K GE+EWVHK EMD+SRR+F L
Sbjct: 296 KLRSLQKGTFDSKFGEYEWVHKRHEMDSSRRKFHL 330
>sp|Q5RJS9|RPF1_RAT Ribosome production factor 1 OS=Rattus norvegicus GN=Rpf1 PE=2 SV=2
Length = 345
Score = 211 bits (536), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 104/202 (51%), Positives = 137/202 (67%), Gaps = 25/202 (12%)
Query: 59 FISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPT 118
+L +VIP+SH Y R LKKII +DFT +IV++ +R+ P+ L++ LP+GPT
Sbjct: 159 LCEQLSTVIPDSHVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPT 218
Query: 119 AHFKLSKLVLRKDIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRV 177
AHFK+S + LRK+IK G +PT H+PE++LNNF TRLGH +GR+ SLFP +P+F GR+V
Sbjct: 219 AHFKMSSVRLRKEIKRRGKDPTEHVPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQV 278
Query: 178 VTFHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTL 237
TFHNQRD+IFFR HRYIF++++ G +QE GPRFTL
Sbjct: 279 ATFHNQRDYIFFRFHRYIFKSEKKVG------------------------IQELGPRFTL 314
Query: 238 KLVSLQHGTFDTKGGEFEWVHK 259
KL SLQ GTFD+K GE+EWVHK
Sbjct: 315 KLRSLQKGTFDSKYGEYEWVHK 336
>sp|Q9VKB4|RPF1_DROME Probable ribosome production factor 1 OS=Drosophila melanogaster
GN=CG6712 PE=2 SV=1
Length = 394
Score = 199 bits (506), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 109/213 (51%), Positives = 141/213 (66%), Gaps = 26/213 (12%)
Query: 62 ELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHF 121
EL + PN+ R +KKI + A++++FT +++V+ +RR+P+ LL+I LP+GPTAHF
Sbjct: 205 ELSRIFPNALVKIRNKSSVKKICKSAEREEFTDVVIVNEDRRKPNGLLVIHLPNGPTAHF 264
Query: 122 KLSKLVLRKDIK-NHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTF 180
KLS + L DIK +H T H PE++LNNF TRLG VGR++ +LF PEFRGRR VTF
Sbjct: 265 KLSNVKLTSDIKRDHKEITKHRPEVILNNFTTRLGLTVGRMLGALFHHDPEFRGRRAVTF 324
Query: 181 HNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLV 240
HNQRD+IFFRHHRY F TKE GK+ K L+E GPRFTLKL
Sbjct: 325 HNQRDYIFFRHHRYEF-TKE-------GKRVK---------------LRELGPRFTLKLR 361
Query: 241 SLQHGTFDTKGGEFEWV--HKPEMDTSRRRFFL 271
SLQ GTFD+K G++ W+ +K SRRRFFL
Sbjct: 362 SLQEGTFDSKTGDYAWIISNKRHAMESRRRFFL 394
>sp|P38805|RPF1_YEAST Ribosome production factor 1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPF1 PE=1 SV=1
Length = 295
Score = 187 bits (474), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 97/214 (45%), Positives = 131/214 (61%), Gaps = 29/214 (13%)
Query: 59 FISELLSVIPNSHYYKRG-TYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGP 117
F + L+ ++PN + KR Y LK+I + K++FT I++++ ++++ L I LP+GP
Sbjct: 110 FANILIEILPNVTFVKRKFGYKLKEISDICIKRNFTDIVIINEDKKKVTGLTFIHLPEGP 169
Query: 118 TAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRV 177
T +FKLS V K I HG PT HIPEL+LNNF TRLG VGRL QS+ PQ+P+ GR+V
Sbjct: 170 TFYFKLSSFVEVKKIVGHGRPTSHIPELILNNFQTRLGQTVGRLFQSILPQNPDIEGRQV 229
Query: 178 VTFHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTL 237
+T HNQRD+IFFR HRY+F+ E G LQE GP+FTL
Sbjct: 230 ITLHNQRDYIFFRRHRYVFKDNERVG------------------------LQELGPQFTL 265
Query: 238 KLVSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 271
KL LQ G + E EW HKPEMD +++F+L
Sbjct: 266 KLKRLQRGIKE----ETEWEHKPEMDKEKKKFYL 295
>sp|O14180|YDS4_SCHPO Brix domain-containing protein C4F8.04 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC4F8.04 PE=4 SV=1
Length = 306
Score = 178 bits (452), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 95/214 (44%), Positives = 133/214 (62%), Gaps = 19/214 (8%)
Query: 59 FISELLSVIPNSHYYKR-GTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGP 117
F SELL PN+ + KR G ++ +I E A K+ +T ++V++ +R++ +AL ++ LP+GP
Sbjct: 111 FASELLDCFPNAEFRKRTGDIEVHEIAEAAAKRGYTDLLVLNEDRKKTNALTLVHLPNGP 170
Query: 118 TAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRV 177
+ +F LS L K+I NHG TGHIPEL++NNF+TRLG V R QSLF Q+P+ +GR+V
Sbjct: 171 SFYFTLSNLQTAKEISNHGRSTGHIPELIINNFSTRLGMTVARAFQSLFIQTPQIQGRQV 230
Query: 178 VTFHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTL 237
VT H QRDF+FFR HRY F K S D G T LQE GPRFT+
Sbjct: 231 VTIHCQRDFLFFRRHRYAFREK-SNMPDGIG-----------------TGLQELGPRFTM 272
Query: 238 KLVSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 271
+L +Q G +D K GE + ++ RR+F+L
Sbjct: 273 RLRMVQKGVWDRKEGEVFFESNAGEESDRRKFWL 306
>sp|O62518|YHPK_CAEEL Brix domain-containing protein ZK795.3 OS=Caenorhabditis elegans
GN=ZK795.3 PE=4 SV=1
Length = 292
Score = 136 bits (343), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 75/214 (35%), Positives = 114/214 (53%), Gaps = 26/214 (12%)
Query: 59 FISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPT 118
F E+ + PN+ RG YD+K++++ +K +D T +I+ R PD +L+ LP GPT
Sbjct: 95 FAKEMKLIFPNAQRINRGHYDVKQVVQASKAQDSTDLIIFTETRGNPDGMLVCHLPFGPT 154
Query: 119 AHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVV 178
A F ++ +V+R DI N G + P L+ +N ++LGHR +++ LFP P+ +R++
Sbjct: 155 AFFSMANVVMRHDIPNCGTMSEQYPHLIFDNLNSKLGHRFTTILKHLFP-VPKPDSKRII 213
Query: 179 TFHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLK 238
TF N D+I FRHH Y K D + E L E GPRF LK
Sbjct: 214 TFSNSEDYISFRHHVY--------------KTENDGEVE----------LTEAGPRFELK 249
Query: 239 LVSLQHGTFDT-KGGEFEWVHKPEMDTSRRRFFL 271
++ GT +T E EWV + +T+R+R FL
Sbjct: 250 PYQIKLGTLETLAAAEDEWVLRSYTNTARKRTFL 283
>sp|O13823|IMP4_SCHPO U3 small nucleolar ribonucleoprotein protein imp4
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=imp4 PE=3 SV=1
Length = 289
Score = 134 bits (337), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 82/240 (34%), Positives = 115/240 (47%), Gaps = 29/240 (12%)
Query: 26 AVIRQSTWAWDNLWHFLYCLPVYMLFILQRGPA-----FISELLSVIPNSHYYKRGTYDL 80
A ++ D+ +H L +L R P+ F E+ +IPNS+ RG +
Sbjct: 63 ATQEETETNLDDEYHRLGEREPKVLVTTSREPSSRLAQFAKEVRLLIPNSYRLNRGNIVV 122
Query: 81 KKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTG 140
++E A+ D T I+++H +R PD L+I LP GPT F L +VLR DI N G +
Sbjct: 123 GSLVEAARANDITDIVILHEHRGIPDGLVISHLPYGPTLSFSLHNVVLRHDIPNTGTMSE 182
Query: 141 HIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETKE 200
P L+ N ++LG RV + +LFP P+ RVVTF N D+I FRHH Y
Sbjct: 183 AYPHLIFENLTSKLGKRVKTALSALFPPDPKDTTPRVVTFANTDDYISFRHHIYA----- 237
Query: 201 SKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKP 260
KT +++I L E GPRF +KL + GT D + EW KP
Sbjct: 238 -----------------KTGPKQII--LSEAGPRFEMKLFEITLGTVDMVDADVEWKLKP 278
>sp|Q0VD01|IMP4_BOVIN U3 small nucleolar ribonucleoprotein protein IMP4 OS=Bos taurus
GN=IMP4 PE=2 SV=1
Length = 291
Score = 125 bits (315), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 75/214 (35%), Positives = 113/214 (52%), Gaps = 26/214 (12%)
Query: 59 FISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPT 118
F EL V P + RG +++ ++ K T ++VVH +R P L++ LP GPT
Sbjct: 100 FAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPT 159
Query: 119 AHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVV 178
A+F L +V+R DI + G + P L+++ F++RLG RV +++ LFP P+ RRV+
Sbjct: 160 AYFTLCNVVMRHDIPDLGTASEAKPHLIMHGFSSRLGKRVSDILRYLFP-VPKDDSRRVI 218
Query: 179 TFHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLK 238
TF NQ D+I FRHH Y +KT+ + V L E GPRF LK
Sbjct: 219 TFANQDDYISFRHHVY----------------------KKTNHRNV--ELTEVGPRFELK 254
Query: 239 LVSLQHGTFDTKG-GEFEWVHKPEMDTSRRRFFL 271
L ++ GT + + + EW P +T+ +R FL
Sbjct: 255 LYMIRLGTLEQEATADVEWRWHPYTNTAHKRVFL 288
>sp|Q6FNN7|IMP4_CANGA U3 small nucleolar ribonucleoprotein protein IMP4 OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=IMP4 PE=3 SV=1
Length = 288
Score = 124 bits (311), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 108/213 (50%), Gaps = 25/213 (11%)
Query: 59 FISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPT 118
F E+ + PN+ RG Y + ++ KK T +IV+H +R P +L + P GPT
Sbjct: 101 FAKEIKLLFPNAVRLNRGNYVMADLVSACKKSGTTDLIVLHEHRGVPTSLTVSHFPYGPT 160
Query: 119 AHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVV 178
A F L +VLR DI N GN + P L+ +NF T LG+RV ++++LFP P+ RV+
Sbjct: 161 AFFSLHNVVLRHDILNRGNQSEVNPHLIFDNFTTPLGNRVVTILKNLFPPGPKKDSSRVI 220
Query: 179 TFHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLK 238
TF N+ DFI R H Y+ + KD + E GPRF ++
Sbjct: 221 TFANRGDFISVRQHVYV--------------RTKDG-----------VEMAEVGPRFEMR 255
Query: 239 LVSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 271
L L+ GT + K + EW + + T+ R+ +L
Sbjct: 256 LFELRLGTLENKDADVEWQLRRFVRTANRKDYL 288
>sp|Q5PQR5|IMP4_RAT U3 small nucleolar ribonucleoprotein protein IMP4 OS=Rattus
norvegicus GN=Imp4 PE=2 SV=1
Length = 291
Score = 123 bits (309), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 75/214 (35%), Positives = 111/214 (51%), Gaps = 26/214 (12%)
Query: 59 FISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPT 118
F EL V P + RG +++ ++ K T ++VVH +R P L++ LP GPT
Sbjct: 100 FAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPT 159
Query: 119 AHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVV 178
A+F L +V+R DI + G + P L+ + F++RLG RV +++ LFP P+ RV+
Sbjct: 160 AYFTLCNVVMRHDIPDLGTMSEAKPHLITHGFSSRLGKRVSDILRYLFP-VPKDDSHRVI 218
Query: 179 TFHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLK 238
TF NQ D+I FRHH Y +KT + V L E GPRF LK
Sbjct: 219 TFANQDDYISFRHHVY----------------------KKTDHRNV--ELTEVGPRFELK 254
Query: 239 LVSLQHGTFDTKG-GEFEWVHKPEMDTSRRRFFL 271
L ++ GT + + + EW P +T+R+R FL
Sbjct: 255 LYMIRLGTLEQEATADVEWRWHPYTNTARKRVFL 288
>sp|Q8VHZ7|IMP4_MOUSE U3 small nucleolar ribonucleoprotein protein IMP4 OS=Mus musculus
GN=Imp4 PE=2 SV=1
Length = 291
Score = 123 bits (309), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 75/214 (35%), Positives = 111/214 (51%), Gaps = 26/214 (12%)
Query: 59 FISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPT 118
F EL V P + RG +++ ++ K T ++VVH +R P L++ LP GPT
Sbjct: 100 FAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPT 159
Query: 119 AHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVV 178
A+F L +V+R DI + G + P L+ + F++RLG RV +++ LFP P+ RV+
Sbjct: 160 AYFTLCNVVMRHDIPDLGTMSEAKPHLITHGFSSRLGKRVSDILRYLFP-VPKDDSHRVI 218
Query: 179 TFHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLK 238
TF NQ D+I FRHH Y +KT + V L E GPRF LK
Sbjct: 219 TFANQDDYISFRHHVY----------------------KKTDHRNV--ELTEVGPRFELK 254
Query: 239 LVSLQHGTFDTKG-GEFEWVHKPEMDTSRRRFFL 271
L ++ GT + + + EW P +T+R+R FL
Sbjct: 255 LYMIRLGTLEQEATADVEWRWHPYTNTARKRVFL 288
>sp|Q5R947|IMP4_PONAB U3 small nucleolar ribonucleoprotein protein IMP4 OS=Pongo abelii
GN=IMP4 PE=2 SV=2
Length = 291
Score = 123 bits (309), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 75/214 (35%), Positives = 111/214 (51%), Gaps = 26/214 (12%)
Query: 59 FISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPT 118
F EL V P + RG +++ ++ K T ++VVH +R P L++ LP GPT
Sbjct: 100 FAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPT 159
Query: 119 AHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVV 178
A+F L +V+R DI + G + P L+ + F++RLG RV +++ LFP P+ RV+
Sbjct: 160 AYFTLCNVVMRHDIPDLGTMSEAKPHLITHGFSSRLGKRVSDILRYLFP-VPKDDSHRVI 218
Query: 179 TFHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLK 238
TF NQ D+I FRHH Y +KT + V L E GPRF LK
Sbjct: 219 TFANQDDYISFRHHVY----------------------KKTDHRNV--ELTEVGPRFELK 254
Query: 239 LVSLQHGTFDTKG-GEFEWVHKPEMDTSRRRFFL 271
L ++ GT + + + EW P +T+R+R FL
Sbjct: 255 LYMIRLGTLEQEATADVEWRWHPYTNTARKRVFL 288
>sp|Q96G21|IMP4_HUMAN U3 small nucleolar ribonucleoprotein protein IMP4 OS=Homo sapiens
GN=IMP4 PE=1 SV=1
Length = 291
Score = 123 bits (309), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 75/214 (35%), Positives = 111/214 (51%), Gaps = 26/214 (12%)
Query: 59 FISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPT 118
F EL V P + RG +++ ++ K T ++VVH +R P L++ LP GPT
Sbjct: 100 FAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPT 159
Query: 119 AHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVV 178
A+F L +V+R DI + G + P L+ + F++RLG RV +++ LFP P+ RV+
Sbjct: 160 AYFTLCNVVMRHDIPDLGTMSEAKPHLITHGFSSRLGKRVSDILRYLFP-VPKDDSHRVI 218
Query: 179 TFHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLK 238
TF NQ D+I FRHH Y +KT + V L E GPRF LK
Sbjct: 219 TFANQDDYISFRHHVY----------------------KKTDHRNV--ELTEVGPRFELK 254
Query: 239 LVSLQHGTFDTKG-GEFEWVHKPEMDTSRRRFFL 271
L ++ GT + + + EW P +T+R+R FL
Sbjct: 255 LYMIRLGTLEQEATADVEWRWHPYTNTARKRVFL 288
>sp|Q755T8|IMP4_ASHGO U3 small nucleolar ribonucleoprotein protein IMP4 OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=IMP4 PE=3 SV=2
Length = 283
Score = 121 bits (304), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 106/213 (49%), Gaps = 25/213 (11%)
Query: 59 FISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPT 118
F E+ + P S RG Y +K +++ +K T ++V+H +R P AL I P GPT
Sbjct: 96 FAKEVKLLFPTSVRLNRGNYIMKNLVDACQKSGTTDLVVLHEHRGVPTALTISHFPHGPT 155
Query: 119 AHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVV 178
A F L +VLR DI N GN + P L+ +NF T LG RV ++++ +FP + RV+
Sbjct: 156 ASFSLHNVVLRHDILNAGNQSEVHPHLIFDNFTTPLGQRVVKILKHMFPPGVKKDSPRVI 215
Query: 179 TFHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLK 238
TF N+ DFI R H Y+ K +D L E GPRF +K
Sbjct: 216 TFANRGDFISVRQHVYV--------------KTRDG-----------VELAEVGPRFEMK 250
Query: 239 LVSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 271
L L GT + K + EW + + T+ R+ +L
Sbjct: 251 LYELTLGTLENKDADVEWQLRRFVRTANRKDYL 283
>sp|P53941|IMP4_YEAST U3 small nucleolar ribonucleoprotein protein IMP4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=IMP4 PE=1
SV=1
Length = 290
Score = 118 bits (296), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 107/217 (49%), Gaps = 25/217 (11%)
Query: 55 RGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLP 114
R F E+ + PN+ RG Y + +++ KK T ++V+H +R P +L I P
Sbjct: 99 RLSQFAKEIKLLFPNAVRLNRGNYVMPNLVDACKKSGTTDLVVLHEHRGVPTSLTISHFP 158
Query: 115 DGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRG 174
GPTA F L +V+R DI N GN + P L+ +NF T LG RV +++ LF P+
Sbjct: 159 HGPTAQFSLHNVVMRHDIINAGNQSEVNPHLIFDNFTTALGKRVVCILKHLFNAGPKKDS 218
Query: 175 RRVVTFHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPR 234
RV+TF N+ DFI R H Y+ T+E + E GPR
Sbjct: 219 ERVITFANRGDFISVRQHVYV-RTREG------------------------VEIAEVGPR 253
Query: 235 FTLKLVSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 271
F ++L L+ GT + K + EW + + T+ ++ +L
Sbjct: 254 FEMRLFELRLGTLENKDADVEWQLRRFIRTANKKDYL 290
>sp|Q6BYD9|IMP4_DEBHA U3 small nucleolar ribonucleoprotein protein IMP4 OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC
0083 / IGC 2968) GN=IMP4 PE=3 SV=2
Length = 284
Score = 112 bits (281), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 105/228 (46%), Gaps = 30/228 (13%)
Query: 49 MLFILQRGPA-----FISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRR 103
+L R P+ F E+ + PNS RG Y + ++ ++ + +I++H +R
Sbjct: 81 VLITTSRNPSVKLLQFSKEIKLMFPNSIKLNRGNYVITDLVATCQRVQISDLIILHEHRG 140
Query: 104 EPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQ 163
P +L I P GP+ F L + LR D+ GN + P LV NF + LG RV ++++
Sbjct: 141 IPTSLTISHFPHGPSIIFTLHNVKLRHDLPEIGNSSESYPHLVFENFTSELGKRVVKIMK 200
Query: 164 SLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQK 223
LFP + RV+TF N DFI RHH Y+ K KD
Sbjct: 201 HLFPPGVKKDSSRVITFINNDDFISVRHHMYV--------------KTKDT--------- 237
Query: 224 VITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 271
L E GPRF ++L L+ G D K E EW + + T R+ +L
Sbjct: 238 --VELSEVGPRFEMRLYELRLGLLDNKDSEVEWQLRRFIRTGNRKNYL 283
>sp|Q6C804|IMP4_YARLI U3 small nucleolar ribonucleoprotein protein IMP4 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=IMP4 PE=3 SV=1
Length = 283
Score = 110 bits (276), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 104/213 (48%), Gaps = 25/213 (11%)
Query: 59 FISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPT 118
F E+ + P S RG L ++ K + +IV+H +R P A+ + P GPT
Sbjct: 96 FAKEVKLLFPTSIRLNRGGTVLPSLVSACKTSASSDLIVLHEHRGVPTAMTVSHFPHGPT 155
Query: 119 AHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVV 178
A+F L +VLR D+ + GN + P L+ +NF T LG RV ++++ LFP + RV+
Sbjct: 156 AYFSLHNVVLRHDLPDTGNMSEVHPHLIFDNFTTDLGKRVVQILKHLFPPGVKKDSARVI 215
Query: 179 TFHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLK 238
TF N+ DFI R H Y+ +T+E L E GPRF ++
Sbjct: 216 TFANRGDFISVRQHVYV-KTREG------------------------VELAEVGPRFEMR 250
Query: 239 LVSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 271
L L+ GT + K + EW M T+ ++ +L
Sbjct: 251 LYDLRLGTLENKDADVEWRMHGFMRTANKKDYL 283
>sp|Q54N44|PPAN_DICDI Peter Pan-like protein OS=Dictyostelium discoideum GN=ppan PE=3
SV=1
Length = 426
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 84/207 (40%), Gaps = 68/207 (32%)
Query: 108 LLIIGLPDGPTAHFKLSKLVLRKDI-KNHGNPTG------HIPELVLNNFATRLGH--RV 158
+ + LP GPT FK+ + ++D+ K PT + P +VLN F H V
Sbjct: 114 MAMARLPKGPTTTFKIQEYSFQRDVAKAKIRPTSFEKSYLNSPLVVLNGFTRGTPHLEMV 173
Query: 159 GRLIQSLFPQSPEF-----RGRRVVTF--HNQRDFIFFRHH-------------RYIFET 198
++QSLFP + +RVV F + + D + FRH+ + I ++
Sbjct: 174 QNMVQSLFPSINVYTLKLSTCKRVVLFNYNKETDNVEFRHYAIKVSNVGVNRSIKRIIQS 233
Query: 199 K---------------------ESKGSDAN-----------GKKAKDAKSEK------TS 220
K ES DAN KAK+ K E+ T+
Sbjct: 234 KIPDISNLGDISDYVMNGLGATESDYEDANDGQVELSSKMINSKAKNIKLERKGLDINTT 293
Query: 221 QQKVITRLQECGPRFTLKLVSLQHGTF 247
Q++ I +L+E GPR L L+ ++ +
Sbjct: 294 QKRAI-KLEEIGPRMNLSLLKVEDDLY 319
>sp|Q9HGL6|BRX1_SCHPO Ribosome biogenesis protein brx1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=brx1 PE=3 SV=1
Length = 295
Score = 36.6 bits (83), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 92/218 (42%), Gaps = 44/218 (20%)
Query: 49 MLFILQRGPAF-----ISELLSVIPNSHYYKRGTYDLK----KIIEYAKKKDFTSIIVVH 99
+L + RG + +++L+S++P H K D K ++ E A+ + +I
Sbjct: 45 VLVLSSRGVTYRQRHLLNDLVSMMP--HSKKDSKLDSKDRLYQLNELAELYNCNNIFFFE 102
Query: 100 TNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNP-TGHIPELVLNNFATRLGHRV 158
+ RRE L I P+GPT F + L ++ GN G P L + H
Sbjct: 103 SRRREDLYLHIARAPNGPTVKFHVENLHTMDELNMTGNALKGSRPILSFDKTFDTAPHL- 161
Query: 159 GRLIQSLFPQS---PEFRGR------RVVTFHNQRDFIFFRHHRYIFETKESKGSDANGK 209
++++ L Q+ P+ R RV T I+FR+ +E +E N
Sbjct: 162 -KVVKELLQQTFGIPKGARRSKPFIDRVCTLTIADGKIWFRN----YEIRE------NED 210
Query: 210 KAKDAKSEKTSQQKVITRLQECGPRFTLKLVSLQHGTF 247
K+KD + L E GPRF + ++++ G+F
Sbjct: 211 KSKDPVT-----------LIEIGPRFVMTIINILEGSF 237
>sp|Q91YU8|SSF1_MOUSE Suppressor of SWI4 1 homolog OS=Mus musculus GN=Ppan PE=2 SV=2
Length = 470
Score = 34.7 bits (78), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 9/69 (13%)
Query: 108 LLIIGLPDGPTAHFKLSKLVLRKDI-------KNHGNPTGHIPELVLNNFATRLGH--RV 158
L ++ LP GPT F++SK L +D+ + H H P LVLN+F + H +
Sbjct: 97 LKLMRLPGGPTLTFQISKYTLIRDVVSSLRRHRMHEQQFNHPPLLVLNSFGPQGMHIKLM 156
Query: 159 GRLIQSLFP 167
+ Q+LFP
Sbjct: 157 ATMFQNLFP 165
>sp|O14206|YDD3_SCHPO Brix domain-containing protein C1B9.03c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC1B9.03c PE=1 SV=2
Length = 389
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 50/111 (45%), Gaps = 21/111 (18%)
Query: 108 LLIIGLPDGPTAHFKLSKLVLRKDI----KNHGNPTGHI---PELVLNNFATRLGHR--- 157
L II P GP+ HF++ + +L KD+ KN +PT P LV+N+F
Sbjct: 96 LRIIRAPRGPSLHFRIHEYMLNKDVRRLQKNPKSPTTEFLTPPLLVMNHFNQNSSKDSPH 155
Query: 158 ---VGRLIQSLFP----QSPEFRGRRVVTFHNQRD--FIFFRHHRYIFETK 199
+ Q++FP Q + V N+RD +I RH +I TK
Sbjct: 156 EALLTTTFQNMFPPISVQHTNINSVKRVLLLNRRDDGYIDLRH--FIISTK 204
>sp|Q54QQ1|PHG2_DICDI Serine/threonine-protein kinase phg2 OS=Dictyostelium discoideum
GN=phg2 PE=1 SV=1
Length = 1387
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
Query: 1 MRPEDIDHYMSFQFQCMFFGLFKNIAVIRQSTWAWDNLWHFLYCLPVYMLFILQRGPAFI 60
++P+DI M F F G F IAV + T A D C V +L G F+
Sbjct: 583 VQPKDIMRLMRFYFGDSLDGTFFTIAV-QNDTSAKD------VCASVEQKLLLPSGSTFV 635
Query: 61 SELLSVIPNSHYYKRGTYDLKKIIE 85
S +L + PN +R + + IIE
Sbjct: 636 SLVLPIQPNGSKIERVLGEDEIIIE 660
>sp|Q6GFP0|SPLE_STAAR Serine protease SplE OS=Staphylococcus aureus (strain MRSA252)
GN=splE PE=3 SV=1
Length = 238
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 20/68 (29%)
Query: 68 PNSHYYKRGTYDLKKIIEYAKK--------------------KDFTSIIVVHTNRREPDA 107
PN Y G Y +KKI+ YA K KD+T I+ + + +E +
Sbjct: 90 PNGEYNNGGFYKVKKIVRYAGKEDIAILHVEDKAVHPKNRNFKDYTGILKIASEAKENER 149
Query: 108 LLIIGLPD 115
+ I+G P+
Sbjct: 150 ISIVGYPE 157
>sp|Q12153|SSF2_YEAST Ribosome biogenesis protein SSF2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SSF2 PE=1 SV=1
Length = 453
Score = 33.1 bits (74), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 216 SEKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHK 259
S+ T ++K I +L E GPR TLKLV ++ G K E+V K
Sbjct: 317 SQPTPRKKAI-KLTELGPRLTLKLVKIEDGICSGKVLHHEFVQK 359
>sp|Q9FD07|SPLE_STAAU Serine protease SplE OS=Staphylococcus aureus GN=splE PE=3 SV=1
Length = 238
Score = 32.3 bits (72), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 20/68 (29%)
Query: 68 PNSHYYKRGTYDLKKIIEYAKK--------------------KDFTSIIVVHTNRREPDA 107
PN Y G Y +KKI+ YA + KD+T I+ + + +E +
Sbjct: 90 PNGEYNNGGFYKVKKIVRYAGQEDIAILHVEDKAIHPKNRNFKDYTGILKIASEAKENER 149
Query: 108 LLIIGLPD 115
+ I+G P+
Sbjct: 150 ISIVGYPE 157
>sp|Q9NQ55|SSF1_HUMAN Suppressor of SWI4 1 homolog OS=Homo sapiens GN=PPAN PE=1 SV=1
Length = 473
Score = 32.3 bits (72), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 9/67 (13%)
Query: 110 IIGLPDGPTAHFKLSKLVLRKDI-------KNHGNPTGHIPELVLNNFATRLGH--RVGR 160
++ LP GPT F++ K L +D+ + H H P LVLN+F H +
Sbjct: 99 LMRLPGGPTLTFQVKKYSLVRDVVSSLRRHRMHEQQFAHPPLLVLNSFGPHGMHVKLMAT 158
Query: 161 LIQSLFP 167
+ Q+LFP
Sbjct: 159 MFQNLFP 165
>sp|P38789|SSF1_YEAST Ribosome biogenesis protein SSF1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SSF1 PE=1 SV=1
Length = 453
Score = 32.0 bits (71), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 219 TSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHK 259
T ++K I +L E GPR TLKLV ++ G K E+V K
Sbjct: 320 TPRKKAI-KLTELGPRLTLKLVKIEEGICSGKVLHHEFVQK 359
>sp|Q9ASU7|PPAN_ARATH Peter Pan-like protein OS=Arabidopsis thaliana GN=PPAN PE=1 SV=1
Length = 345
Score = 32.0 bits (71), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
Query: 196 FETKESKGSDANGKK-------AKDAKSEKTSQQKVITRLQECGPRFTLKLVSLQHG 245
F TK GS++ G + + D K +LQE GPR T++LV ++ G
Sbjct: 236 FVTKAGYGSESEGDEEAATVTLSSDLGRVNKGATKSAVKLQEIGPRMTMQLVKVEEG 292
>sp|A9BJY3|MUTS_PETMO DNA mismatch repair protein MutS OS=Petrotoga mobilis (strain DSM
10674 / SJ95) GN=mutS PE=3 SV=1
Length = 817
Score = 31.6 bits (70), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 9/98 (9%)
Query: 91 DFTSIIVVHTNRREP--DALLIIGLPDGPTAHF----KLSKLVLRKDIKNHGNPTGHIPE 144
D T +I + +E D++L+ L D F K+S+++ K +GNP IP
Sbjct: 3 DLTPMIKQYLKIKEEYKDSILLFRLGDFYETFFEDAKKVSEILQIVLTKRNGNPMAGIPY 62
Query: 145 LVLNNFATRL---GHRVGRLIQSLFPQSPEFRGRRVVT 179
LNN+ RL G++V Q PQS + R VT
Sbjct: 63 HALNNYLKRLLDAGYKVAICEQMEDPQSSKGIVDRKVT 100
>sp|A5IFN1|TYPH_LEGPC Putative thymidine phosphorylase OS=Legionella pneumophila (strain
Corby) GN=LPC_2257 PE=3 SV=2
Length = 517
Score = 31.2 bits (69), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
Query: 110 IIGLPDGPTAHFKLSK--LVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVG-----RLI 162
+I +P GPTA + L+L++ ++ GN G + +L + + +GH +G R +
Sbjct: 302 VIDIPVGPTAKVRNQSMALLLKQSLEEVGNELGLVVHTILTDGSQPVGHGIGPSLEARDV 361
Query: 163 QSL---FPQSPEFRGRRVVTF 180
S+ P +P R +T
Sbjct: 362 MSVLQGLPDAPNDLRERALTL 382
>sp|A8Z4N5|SPLE_STAAT Serine protease SplE OS=Staphylococcus aureus (strain USA300 /
TCH1516) GN=splE PE=3 SV=1
Length = 238
Score = 30.8 bits (68), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 20/68 (29%)
Query: 68 PNSHYYKRGTYDLKKIIEYAKK--------------------KDFTSIIVVHTNRREPDA 107
PN Y G Y +KKI+ Y+ + KD+T I+ + + +E +
Sbjct: 90 PNGEYNNGGFYKVKKIVRYSGQEDIAILHVEDKAVHPKNRNFKDYTGILKIASEAKENER 149
Query: 108 LLIIGLPD 115
+ I+G P+
Sbjct: 150 ISIVGYPE 157
>sp|A6QHZ2|SPLE_STAAE Serine protease SplE OS=Staphylococcus aureus (strain Newman)
GN=splE PE=3 SV=1
Length = 238
Score = 30.8 bits (68), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 20/68 (29%)
Query: 68 PNSHYYKRGTYDLKKIIEYAKK--------------------KDFTSIIVVHTNRREPDA 107
PN Y G Y +KKI+ Y+ + KD+T I+ + + +E +
Sbjct: 90 PNGEYNNGGFYKVKKIVRYSGQEDIAILHVEDKAVHPKNRNFKDYTGILKIASEAKENER 149
Query: 108 LLIIGLPD 115
+ I+G P+
Sbjct: 150 ISIVGYPE 157
>sp|Q5HEW4|SPLE_STAAC Serine protease SplE OS=Staphylococcus aureus (strain COL) GN=splE
PE=3 SV=1
Length = 238
Score = 30.8 bits (68), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 20/68 (29%)
Query: 68 PNSHYYKRGTYDLKKIIEYAKK--------------------KDFTSIIVVHTNRREPDA 107
PN Y G Y +KKI+ Y+ + KD+T I+ + + +E +
Sbjct: 90 PNGEYNNGGFYKVKKIVRYSGQEDIAILHVEDKAVHPKNRNFKDYTGILKIASEAKENER 149
Query: 108 LLIIGLPD 115
+ I+G P+
Sbjct: 150 ISIVGYPE 157
>sp|Q2FXC7|SPLE_STAA8 Serine protease SplE OS=Staphylococcus aureus (strain NCTC 8325)
GN=splE PE=2 SV=1
Length = 238
Score = 30.8 bits (68), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 20/68 (29%)
Query: 68 PNSHYYKRGTYDLKKIIEYAKK--------------------KDFTSIIVVHTNRREPDA 107
PN Y G Y +KKI+ Y+ + KD+T I+ + + +E +
Sbjct: 90 PNGEYNNGGFYKVKKIVRYSGQEDIAILHVEDKAVHPKNRNFKDYTGILKIASEAKENER 149
Query: 108 LLIIGLPD 115
+ I+G P+
Sbjct: 150 ISIVGYPE 157
>sp|Q2FFT3|SPLE_STAA3 Serine protease SplE OS=Staphylococcus aureus (strain USA300)
GN=splE PE=3 SV=1
Length = 238
Score = 30.8 bits (68), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 20/68 (29%)
Query: 68 PNSHYYKRGTYDLKKIIEYAKK--------------------KDFTSIIVVHTNRREPDA 107
PN Y G Y +KKI+ Y+ + KD+T I+ + + +E +
Sbjct: 90 PNGEYNNGGFYKVKKIVRYSGQEDIAILHVEDKAVHPKNRNFKDYTGILKIASEAKENER 149
Query: 108 LLIIGLPD 115
+ I+G P+
Sbjct: 150 ISIVGYPE 157
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.141 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,785,367
Number of Sequences: 539616
Number of extensions: 4261301
Number of successful extensions: 13629
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 13542
Number of HSP's gapped (non-prelim): 51
length of query: 271
length of database: 191,569,459
effective HSP length: 116
effective length of query: 155
effective length of database: 128,974,003
effective search space: 19990970465
effective search space used: 19990970465
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)