Query 024166
Match_columns 271
No_of_seqs 110 out of 1067
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 02:34:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024166.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024166hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08449 UAA: UAA transporter 100.0 2.3E-34 5E-39 255.8 25.6 235 2-239 61-303 (303)
2 KOG1580 UDP-galactose transpor 100.0 7.9E-33 1.7E-37 227.8 17.2 229 4-235 84-315 (337)
3 KOG1582 UDP-galactose transpor 100.0 8.1E-33 1.8E-37 231.8 16.6 265 1-271 102-367 (367)
4 KOG1581 UDP-galactose transpor 100.0 6.2E-32 1.3E-36 230.3 18.7 233 2-237 80-317 (327)
5 TIGR00817 tpt Tpt phosphate/ph 100.0 2.3E-28 4.9E-33 217.2 23.3 227 4-237 64-297 (302)
6 PF06027 DUF914: Eukaryotic pr 100.0 1.1E-27 2.4E-32 212.9 21.4 231 3-241 77-313 (334)
7 PTZ00343 triose or hexose phos 100.0 9.9E-27 2.2E-31 210.5 25.3 225 5-235 114-350 (350)
8 PLN00411 nodulin MtN21 family 100.0 3.9E-26 8.4E-31 206.5 24.9 226 7-238 80-333 (358)
9 KOG1441 Glucose-6-phosphate/ph 99.9 7.8E-27 1.7E-31 205.2 4.5 232 3-241 81-315 (316)
10 PRK11453 O-acetylserine/cystei 99.9 4.6E-23 1E-27 183.0 27.2 230 4-236 57-290 (299)
11 KOG1583 UDP-N-acetylglucosamin 99.9 2.8E-25 6.1E-30 187.0 7.9 232 2-239 61-320 (330)
12 TIGR00950 2A78 Carboxylate/Ami 99.9 2.2E-22 4.8E-27 174.6 23.0 213 4-228 45-259 (260)
13 KOG1443 Predicted integral mem 99.9 1E-23 2.2E-28 180.1 13.9 227 2-234 77-316 (349)
14 PRK11689 aromatic amino acid e 99.9 4.9E-22 1.1E-26 176.1 23.1 215 8-235 63-289 (295)
15 KOG1442 GDP-fucose transporter 99.9 1.3E-25 2.7E-30 188.9 -2.6 242 5-250 102-344 (347)
16 KOG1444 Nucleotide-sugar trans 99.9 2.4E-22 5.3E-27 173.6 17.2 232 4-243 76-310 (314)
17 PRK11272 putative DMT superfam 99.9 2.4E-21 5.2E-26 171.4 23.4 217 6-236 69-288 (292)
18 PRK15430 putative chlorampheni 99.9 6.1E-21 1.3E-25 169.1 22.4 208 11-235 78-287 (296)
19 PRK10532 threonine and homoser 99.9 3.6E-20 7.7E-25 164.0 24.7 216 5-239 71-287 (293)
20 TIGR03340 phn_DUF6 phosphonate 99.8 8.9E-20 1.9E-24 160.5 18.7 213 8-230 65-280 (281)
21 PF04142 Nuc_sug_transp: Nucle 99.8 4.1E-19 8.8E-24 152.7 19.7 212 6-224 18-244 (244)
22 KOG2234 Predicted UDP-galactos 99.8 3.2E-18 6.9E-23 150.2 22.7 223 6-236 93-325 (345)
23 COG0697 RhaT Permeases of the 99.8 1.3E-17 2.7E-22 146.0 24.8 214 7-234 71-288 (292)
24 KOG2765 Predicted membrane pro 99.8 4.1E-19 8.8E-24 155.8 13.1 224 9-236 163-393 (416)
25 COG5070 VRG4 Nucleotide-sugar 99.8 2.9E-18 6.3E-23 140.8 9.7 234 4-241 67-304 (309)
26 PF03151 TPT: Triose-phosphate 99.7 4.1E-16 8.8E-21 124.7 16.3 142 92-233 1-153 (153)
27 TIGR00688 rarD rarD protein. T 99.7 9.5E-16 2.1E-20 133.0 19.1 182 8-208 73-255 (256)
28 KOG3912 Predicted integral mem 99.7 5.6E-16 1.2E-20 131.4 15.4 224 8-234 89-335 (372)
29 TIGR00803 nst UDP-galactose tr 99.7 7.8E-16 1.7E-20 130.9 13.7 192 29-231 2-222 (222)
30 TIGR00776 RhaT RhaT L-rhamnose 99.7 1.2E-14 2.6E-19 128.5 19.8 203 15-234 69-289 (290)
31 KOG2766 Predicted membrane pro 99.6 1.8E-17 3.9E-22 138.7 -4.6 250 3-263 76-330 (336)
32 COG2962 RarD Predicted permeas 99.6 5.6E-13 1.2E-17 114.3 20.5 206 18-241 85-291 (293)
33 KOG4510 Permease of the drug/m 99.5 3.8E-15 8.3E-20 125.6 1.3 218 9-236 101-328 (346)
34 COG5006 rhtA Threonine/homoser 99.4 8.9E-11 1.9E-15 98.7 21.3 215 4-236 70-285 (292)
35 PF00892 EamA: EamA-like trans 99.2 3.7E-10 8.1E-15 86.3 10.5 123 102-232 2-125 (126)
36 COG2510 Predicted membrane pro 99.0 7.4E-10 1.6E-14 83.8 7.3 134 93-232 5-138 (140)
37 PRK15430 putative chlorampheni 99.0 5.9E-08 1.3E-12 86.1 18.4 140 88-232 5-144 (296)
38 TIGR00688 rarD rarD protein. T 99.0 4.7E-08 1E-12 84.7 17.3 138 91-232 2-141 (256)
39 KOG4314 Predicted carbohydrate 98.9 3.5E-09 7.5E-14 86.2 6.9 218 7-234 55-277 (290)
40 PF05653 Mg_trans_NIPA: Magnes 98.9 2.8E-08 6E-13 88.2 12.6 214 8-235 52-294 (300)
41 PF13536 EmrE: Multidrug resis 98.8 2E-08 4.2E-13 76.3 8.5 78 3-83 32-110 (113)
42 TIGR03340 phn_DUF6 phosphonate 98.8 1.6E-07 3.6E-12 82.6 14.1 133 93-233 3-135 (281)
43 PRK02971 4-amino-4-deoxy-L-ara 98.8 6E-07 1.3E-11 69.7 14.8 121 91-235 2-124 (129)
44 PF06800 Sugar_transport: Suga 98.8 1.4E-06 3.1E-11 75.4 18.6 206 9-230 49-268 (269)
45 PF13536 EmrE: Multidrug resis 98.7 1.4E-06 3E-11 66.1 14.1 103 132-236 7-109 (113)
46 PLN00411 nodulin MtN21 family 98.4 1.5E-05 3.3E-10 72.5 16.0 136 95-235 17-158 (358)
47 TIGR00950 2A78 Carboxylate/Ami 98.4 1E-05 2.2E-10 69.9 14.2 118 104-233 2-119 (260)
48 COG2962 RarD Predicted permeas 98.4 1.8E-05 3.9E-10 68.6 14.7 142 89-235 5-146 (293)
49 KOG2922 Uncharacterized conser 98.3 1.4E-06 3E-11 76.2 7.2 212 14-236 73-309 (335)
50 PF00892 EamA: EamA-like trans 98.3 1.5E-06 3.2E-11 66.1 6.3 71 6-78 54-125 (126)
51 PRK15051 4-amino-4-deoxy-L-ara 98.2 7.8E-06 1.7E-10 61.8 8.1 65 13-79 45-109 (111)
52 PRK15051 4-amino-4-deoxy-L-ara 98.1 3.5E-05 7.6E-10 58.2 10.5 64 169-232 45-108 (111)
53 PRK11272 putative DMT superfam 98.1 0.00015 3.3E-09 64.1 16.2 128 96-234 13-142 (292)
54 PTZ00343 triose or hexose phos 98.1 0.00014 3E-09 66.1 15.2 139 90-233 48-186 (350)
55 TIGR00817 tpt Tpt phosphate/ph 98.1 0.00012 2.6E-09 65.0 14.5 120 106-232 17-136 (302)
56 PF08449 UAA: UAA transporter 98.1 0.00013 2.8E-09 64.9 14.7 131 104-241 13-144 (303)
57 PRK11689 aromatic amino acid e 98.1 0.00014 2.9E-09 64.5 14.6 130 91-233 4-137 (295)
58 PRK11453 O-acetylserine/cystei 98.0 0.00029 6.3E-09 62.5 16.0 124 94-233 7-132 (299)
59 PRK02971 4-amino-4-deoxy-L-ara 97.9 6.4E-05 1.4E-09 58.3 8.6 72 8-81 50-124 (129)
60 TIGR00776 RhaT RhaT L-rhamnose 97.9 0.00038 8.3E-09 61.6 13.7 131 92-234 2-137 (290)
61 PRK13499 rhamnose-proton sympo 97.9 0.00062 1.4E-08 61.3 15.0 139 88-235 4-155 (345)
62 COG0697 RhaT Permeases of the 97.9 0.0012 2.7E-08 57.3 16.6 142 89-237 5-147 (292)
63 PRK10452 multidrug efflux syst 97.8 0.00029 6.3E-09 53.8 9.9 67 169-235 38-105 (120)
64 PF06027 DUF914: Eukaryotic pr 97.8 0.00084 1.8E-08 60.4 14.4 78 160-238 79-156 (334)
65 PRK09541 emrE multidrug efflux 97.7 0.00056 1.2E-08 51.5 10.3 66 170-235 39-105 (110)
66 COG2510 Predicted membrane pro 97.6 4E-05 8.7E-10 58.4 2.9 71 7-79 68-139 (140)
67 PF04142 Nuc_sug_transp: Nucle 97.6 0.00096 2.1E-08 57.6 11.6 71 169-239 25-95 (244)
68 PRK13499 rhamnose-proton sympo 97.6 0.022 4.8E-07 51.5 20.3 221 10-234 78-342 (345)
69 PRK10452 multidrug efflux syst 97.6 0.00054 1.2E-08 52.4 8.5 73 7-81 32-105 (120)
70 PF04657 DUF606: Protein of un 97.4 0.01 2.2E-07 46.6 14.3 131 93-230 3-138 (138)
71 PF05653 Mg_trans_NIPA: Magnes 97.4 0.0027 5.9E-08 56.4 12.3 120 88-234 4-123 (300)
72 PF03151 TPT: Triose-phosphate 97.4 0.00052 1.1E-08 54.3 7.0 69 8-78 84-152 (153)
73 PRK09541 emrE multidrug efflux 97.4 0.0017 3.6E-08 48.9 8.8 71 9-81 34-105 (110)
74 COG2076 EmrE Membrane transpor 97.4 0.0026 5.6E-08 47.3 9.4 63 172-234 41-104 (106)
75 PF07857 DUF1632: CEO family ( 97.4 0.001 2.2E-08 57.5 8.3 133 92-240 1-141 (254)
76 COG2076 EmrE Membrane transpor 97.4 0.0017 3.7E-08 48.2 8.4 75 4-80 29-104 (106)
77 PRK11431 multidrug efflux syst 97.3 0.0038 8.2E-08 46.6 9.8 64 170-233 38-102 (105)
78 PRK11431 multidrug efflux syst 97.3 0.002 4.3E-08 48.1 8.2 71 7-79 31-102 (105)
79 PRK10650 multidrug efflux syst 97.3 0.0043 9.3E-08 46.6 9.9 61 172-232 46-107 (109)
80 PRK10650 multidrug efflux syst 97.2 0.0024 5.3E-08 47.9 8.2 68 8-77 38-106 (109)
81 PRK10532 threonine and homoser 97.1 0.0017 3.8E-08 57.4 7.8 70 10-81 213-283 (293)
82 PF00893 Multi_Drug_Res: Small 96.7 0.0087 1.9E-07 43.6 7.2 55 170-224 38-93 (93)
83 KOG4510 Permease of the drug/m 96.6 0.0011 2.3E-08 57.1 2.0 72 164-235 100-171 (346)
84 PF10639 UPF0546: Uncharacteri 96.3 0.0053 1.2E-07 46.3 3.7 69 7-77 43-112 (113)
85 PF00893 Multi_Drug_Res: Small 96.2 0.012 2.7E-07 42.8 5.4 57 12-70 36-93 (93)
86 COG3238 Uncharacterized protei 96.2 0.28 6E-06 38.9 13.0 138 90-233 4-146 (150)
87 PF06800 Sugar_transport: Suga 96.1 0.066 1.4E-06 46.7 10.2 79 161-239 45-128 (269)
88 PF06379 RhaT: L-rhamnose-prot 96.0 0.19 4.1E-06 45.0 12.8 141 87-236 3-156 (344)
89 KOG2234 Predicted UDP-galactos 95.7 0.94 2E-05 40.8 16.0 63 173-235 104-166 (345)
90 KOG2765 Predicted membrane pro 95.2 0.041 9E-07 49.6 5.8 74 166-239 164-237 (416)
91 PF10639 UPF0546: Uncharacteri 95.2 0.083 1.8E-06 39.8 6.4 60 172-231 52-112 (113)
92 COG4975 GlcU Putative glucose 94.4 0.0053 1.2E-07 52.2 -1.9 206 14-235 68-287 (288)
93 COG5006 rhtA Threonine/homoser 93.8 0.14 3.1E-06 43.9 5.4 59 19-79 224-282 (292)
94 TIGR00803 nst UDP-galactose tr 93.4 0.06 1.3E-06 45.5 2.7 65 10-76 157-221 (222)
95 KOG3912 Predicted integral mem 93.0 0.34 7.4E-06 42.3 6.6 67 168-234 93-159 (372)
96 KOG1580 UDP-galactose transpor 92.6 0.16 3.4E-06 43.2 3.8 74 5-80 241-314 (337)
97 PF05684 DUF819: Protein of un 92.3 4.5 9.7E-05 37.3 13.4 7 56-62 14-20 (378)
98 KOG1441 Glucose-6-phosphate/ph 92.2 0.082 1.8E-06 47.3 1.9 71 9-81 239-309 (316)
99 KOG1581 UDP-galactose transpor 91.9 1.9 4E-05 38.2 9.8 73 166-238 88-160 (327)
100 PF08507 COPI_assoc: COPI asso 91.6 0.31 6.7E-06 38.0 4.4 12 218-229 90-101 (136)
101 COG4975 GlcU Putative glucose 90.9 0.076 1.6E-06 45.4 0.3 133 91-236 2-139 (288)
102 KOG4314 Predicted carbohydrate 89.6 0.35 7.5E-06 40.1 3.1 63 174-236 66-128 (290)
103 KOG2922 Uncharacterized conser 87.5 0.35 7.6E-06 42.9 1.9 126 88-240 18-143 (335)
104 PF14851 FAM176: FAM176 family 86.6 0.75 1.6E-05 36.6 3.2 13 220-232 33-45 (153)
105 PF04657 DUF606: Protein of un 86.2 3.3 7.2E-05 32.4 6.7 72 3-75 63-137 (138)
106 KOG1444 Nucleotide-sugar trans 84.9 12 0.00026 33.3 10.1 138 92-234 13-150 (314)
107 PF03605 DcuA_DcuB: Anaerobic 84.8 31 0.00067 31.5 13.4 34 87-120 43-83 (364)
108 COG5070 VRG4 Nucleotide-sugar 83.5 2 4.3E-05 36.4 4.4 71 8-80 227-297 (309)
109 PF12794 MscS_TM: Mechanosensi 82.0 29 0.00062 31.4 11.8 35 200-234 213-247 (340)
110 KOG4831 Unnamed protein [Funct 79.7 2.2 4.7E-05 31.6 3.0 68 7-77 54-123 (125)
111 KOG2766 Predicted membrane pro 78.4 0.61 1.3E-05 40.2 -0.2 84 169-252 86-169 (336)
112 PF04342 DUF486: Protein of un 77.9 3.3 7.2E-05 30.6 3.5 29 202-230 77-105 (108)
113 PRK10599 calcium/sodium:proton 77.2 60 0.0013 29.8 15.8 18 210-227 163-180 (366)
114 PRK02237 hypothetical protein; 76.2 27 0.0006 26.0 7.9 46 190-235 62-107 (109)
115 PF03390 2HCT: 2-hydroxycarbox 75.6 70 0.0015 29.8 14.0 104 3-116 5-118 (414)
116 COG3238 Uncharacterized protei 74.6 16 0.00035 29.0 6.8 75 3-78 68-145 (150)
117 PF15345 TMEM51: Transmembrane 74.4 1.8 3.9E-05 36.6 1.5 26 218-243 66-91 (233)
118 PF14851 FAM176: FAM176 family 73.0 15 0.00033 29.2 6.3 20 151-170 12-31 (153)
119 PRK02237 hypothetical protein; 72.5 7.1 0.00015 29.1 4.1 36 44-81 72-107 (109)
120 KOG1479 Nucleoside transporter 72.1 55 0.0012 30.5 10.7 52 190-241 157-210 (406)
121 PF02694 UPF0060: Uncharacteri 70.9 6.7 0.00015 29.1 3.6 38 42-81 68-105 (107)
122 PRK13108 prolipoprotein diacyl 70.2 39 0.00085 32.0 9.5 24 213-236 254-277 (460)
123 PF15325 MRI: Modulator of ret 70.2 4.9 0.00011 29.2 2.7 49 222-270 11-67 (106)
124 PF07168 Ureide_permease: Urei 69.7 1.6 3.5E-05 38.6 0.2 61 172-233 83-146 (336)
125 PF14283 DUF4366: Domain of un 69.3 2.5 5.3E-05 35.8 1.2 11 230-240 176-186 (218)
126 PF05297 Herpes_LMP1: Herpesvi 69.0 1.7 3.7E-05 38.0 0.2 64 171-234 118-185 (381)
127 PF02694 UPF0060: Uncharacteri 68.9 14 0.0003 27.5 4.9 46 190-235 60-105 (107)
128 PRK01637 hypothetical protein; 68.1 16 0.00034 32.2 6.2 16 35-50 34-49 (286)
129 COG3169 Uncharacterized protei 67.8 16 0.00035 26.7 5.0 32 201-232 83-114 (116)
130 KOG1582 UDP-galactose transpor 65.8 33 0.00073 30.2 7.4 49 32-82 287-335 (367)
131 COG3169 Uncharacterized protei 64.2 55 0.0012 24.0 7.5 30 47-78 85-114 (116)
132 PF05977 MFS_3: Transmembrane 64.0 1.4E+02 0.0031 28.7 17.3 85 180-266 339-423 (524)
133 COG4736 CcoQ Cbb3-type cytochr 63.6 6.9 0.00015 25.9 2.2 25 218-242 15-39 (60)
134 PF13038 DUF3899: Domain of un 63.1 5.1 0.00011 28.8 1.7 21 214-234 3-23 (92)
135 COG2271 UhpC Sugar phosphate p 62.9 12 0.00027 34.9 4.6 68 188-262 160-228 (448)
136 PF15471 TMEM171: Transmembran 62.2 6.4 0.00014 34.1 2.4 27 215-241 161-187 (319)
137 PRK06638 NADH:ubiquinone oxido 62.1 91 0.002 25.9 15.7 23 203-225 134-156 (198)
138 PF10225 DUF2215: Uncharacteri 61.4 1.1E+02 0.0023 26.5 11.9 40 176-215 110-149 (249)
139 PF15102 TMEM154: TMEM154 prot 58.8 9.7 0.00021 30.0 2.7 29 218-246 66-94 (146)
140 PF10587 EF-1_beta_acid: Eukar 57.8 4.1 8.8E-05 22.5 0.3 11 257-267 3-13 (28)
141 PRK11469 hypothetical protein; 56.3 20 0.00043 29.6 4.4 45 187-231 40-85 (188)
142 TIGR00939 2a57 Equilibrative N 55.9 1E+02 0.0023 28.9 9.6 15 218-232 179-193 (437)
143 PF07444 Ycf66_N: Ycf66 protei 54.5 11 0.00023 26.9 2.1 30 212-241 4-33 (84)
144 COG3247 HdeD Uncharacterized c 53.3 1.3E+02 0.0028 24.8 13.5 45 55-99 15-59 (185)
145 PF00558 Vpu: Vpu protein; In 53.0 3.2 7E-05 29.2 -0.7 11 256-266 53-63 (81)
146 PF13980 UPF0370: Uncharacteri 52.7 7.5 0.00016 25.4 1.0 18 216-234 7-24 (63)
147 KOG1583 UDP-N-acetylglucosamin 52.3 14 0.0003 32.5 2.8 41 197-237 101-141 (330)
148 COG2851 CitM H+/citrate sympor 51.7 8.8 0.00019 35.1 1.6 25 46-72 11-35 (433)
149 PF04971 Lysis_S: Lysis protei 51.4 15 0.00032 25.0 2.3 33 211-243 26-64 (68)
150 cd01324 cbb3_Oxidase_CcoQ Cyto 51.1 16 0.00034 23.0 2.3 25 218-242 16-40 (48)
151 KOG1623 Multitransmembrane pro 50.9 52 0.0011 28.4 6.1 44 190-234 163-207 (243)
152 COG1742 Uncharacterized conser 50.1 15 0.00033 27.1 2.3 37 43-81 70-106 (109)
153 COG2978 AbgT Putative p-aminob 49.9 52 0.0011 31.1 6.3 93 174-270 177-269 (516)
154 KOG1287 Amino acid transporter 49.8 2.4E+02 0.0052 27.0 11.5 29 211-239 416-444 (479)
155 TIGR00892 2A0113 monocarboxyla 49.1 2.2E+02 0.0048 26.4 11.1 6 182-187 359-364 (455)
156 PF08372 PRT_C: Plant phosphor 48.5 21 0.00046 28.5 3.2 12 253-264 35-46 (156)
157 COG5336 Uncharacterized protei 47.6 84 0.0018 23.5 5.9 22 214-235 73-94 (116)
158 PRK15432 autoinducer 2 ABC tra 47.0 26 0.00055 31.9 3.9 24 214-237 287-310 (344)
159 KOG2592 Tumor differentially e 46.4 25 0.00055 32.3 3.6 22 214-235 297-318 (426)
160 PF11023 DUF2614: Protein of u 46.1 41 0.00089 25.3 4.1 26 55-80 4-29 (114)
161 PF15387 DUF4611: Domain of un 46.0 7.7 0.00017 28.0 0.3 22 246-267 57-78 (96)
162 TIGR00910 2A0307_GadC glutamat 44.7 2.9E+02 0.0062 26.4 13.4 14 224-237 450-463 (507)
163 PRK09412 anaerobic C4-dicarbox 44.4 2.7E+02 0.006 26.1 14.9 9 212-220 162-170 (433)
164 PF11446 DUF2897: Protein of u 44.3 11 0.00023 24.6 0.7 12 221-232 8-19 (55)
165 PRK11246 hypothetical protein; 43.9 27 0.00059 29.4 3.3 22 56-77 5-26 (218)
166 PF04478 Mid2: Mid2 like cell 43.8 13 0.00028 29.5 1.2 13 219-231 58-70 (154)
167 KOG0847 Transcription factor, 43.2 12 0.00025 31.5 1.0 20 214-233 199-218 (288)
168 PF05297 Herpes_LMP1: Herpesvi 42.7 8.2 0.00018 33.9 0.0 94 32-131 50-145 (381)
169 PF01102 Glycophorin_A: Glycop 42.5 17 0.00037 27.8 1.7 8 230-237 85-92 (122)
170 PLN00028 nitrate transmembrane 42.4 2.9E+02 0.0063 25.8 14.6 15 218-232 417-431 (476)
171 PF10754 DUF2569: Protein of u 41.8 1.7E+02 0.0037 22.9 7.5 28 87-114 117-144 (149)
172 COG1742 Uncharacterized conser 41.5 1.1E+02 0.0024 22.7 5.7 46 190-235 61-106 (109)
173 PF00873 ACR_tran: AcrB/AcrD/A 40.5 4.6E+02 0.0099 27.6 14.5 61 43-105 342-403 (1021)
174 PF14002 YniB: YniB-like prote 40.3 42 0.00091 26.9 3.6 52 216-267 76-130 (166)
175 PF09656 PGPGW: Putative trans 39.4 1E+02 0.0023 19.8 5.4 45 63-116 5-49 (53)
176 TIGR02840 spore_YtaF putative 38.9 99 0.0021 25.8 6.0 48 184-231 30-79 (206)
177 PF11022 DUF2611: Protein of u 38.5 13 0.00029 25.5 0.5 30 206-235 5-35 (71)
178 PRK02935 hypothetical protein; 37.9 52 0.0011 24.4 3.5 49 55-103 5-58 (110)
179 PF07214 DUF1418: Protein of u 37.5 32 0.00069 25.1 2.3 8 219-226 51-58 (96)
180 PF07857 DUF1632: CEO family ( 37.5 2.8E+02 0.006 24.1 10.1 112 5-116 54-208 (254)
181 PRK12489 anaerobic C4-dicarbox 37.4 3.6E+02 0.0079 25.5 18.2 12 47-60 9-20 (443)
182 PF04342 DUF486: Protein of un 37.4 68 0.0015 23.9 4.1 30 45-76 76-105 (108)
183 PF15048 OSTbeta: Organic solu 37.0 28 0.0006 26.6 2.1 11 223-233 46-56 (125)
184 PF04697 Pinin_SDK_N: pinin/SD 36.9 15 0.00032 28.2 0.6 19 253-271 95-113 (134)
185 PHA03049 IMV membrane protein; 36.3 51 0.0011 22.2 3.0 24 215-238 4-27 (68)
186 PF03348 Serinc: Serine incorp 35.8 59 0.0013 30.5 4.5 23 213-235 283-305 (429)
187 PF05545 FixQ: Cbb3-type cytoc 35.7 36 0.00077 21.3 2.2 22 220-241 17-38 (49)
188 COG3086 RseC Positive regulato 35.7 36 0.00079 26.8 2.6 26 188-213 75-105 (150)
189 PF06422 PDR_CDR: CDR ABC tran 35.6 29 0.00062 25.6 2.0 7 260-266 97-103 (103)
190 KOG3762 Predicted transporter 35.2 41 0.00088 32.7 3.3 22 214-235 527-548 (618)
191 KOG2504 Monocarboxylate transp 34.7 4.2E+02 0.0091 25.4 10.7 17 60-76 363-379 (509)
192 KOG1443 Predicted integral mem 34.4 1E+02 0.0022 27.7 5.4 55 21-77 259-313 (349)
193 TIGR00881 2A0104 phosphoglycer 34.4 3.1E+02 0.0067 23.8 11.7 8 224-231 161-168 (379)
194 COG0387 ChaA Ca2+/H+ antiporte 34.1 3.8E+02 0.0082 24.7 15.1 26 211-236 161-186 (368)
195 PF08693 SKG6: Transmembrane a 34.0 34 0.00075 20.7 1.7 19 219-237 21-39 (40)
196 PF07423 DUF1510: Protein of u 33.7 51 0.0011 27.9 3.4 17 218-234 19-35 (217)
197 PF05961 Chordopox_A13L: Chord 33.4 66 0.0014 21.8 3.2 26 215-240 4-29 (68)
198 PF12446 DUF3682: Protein of u 31.6 16 0.00036 27.7 0.1 8 261-268 101-108 (133)
199 PF01102 Glycophorin_A: Glycop 31.3 23 0.00049 27.1 0.8 33 210-242 58-94 (122)
200 TIGR00770 Dcu anaerobic c4-dic 31.3 4.5E+02 0.0097 24.7 16.0 13 87-99 43-55 (430)
201 PRK13664 hypothetical protein; 31.2 30 0.00066 22.5 1.3 19 216-234 7-25 (62)
202 TIGR00819 ydaH p-Aminobenzoyl- 31.2 4.2E+02 0.0091 25.6 9.4 16 103-118 103-118 (513)
203 PF02487 CLN3: CLN3 protein; 31.0 4.4E+02 0.0096 24.5 11.6 47 48-99 79-125 (402)
204 PF11040 DGF-1_C: Dispersed ge 30.6 19 0.00041 24.9 0.3 20 250-270 17-36 (87)
205 PF02487 CLN3: CLN3 protein; 30.5 72 0.0016 29.7 4.1 24 165-188 120-143 (402)
206 KOG2325 Predicted transporter/ 30.3 1.5E+02 0.0032 28.4 6.2 43 194-236 178-231 (488)
207 PF12606 RELT: Tumour necrosis 30.3 76 0.0016 20.2 2.9 17 222-238 12-28 (50)
208 PF01914 MarC: MarC family int 30.2 3.2E+02 0.0069 22.7 7.7 17 208-224 64-80 (203)
209 KOG0569 Permease of the major 30.0 5E+02 0.011 24.9 16.0 52 173-224 132-192 (485)
210 TIGR01167 LPXTG_anchor LPXTG-m 29.9 81 0.0017 17.6 2.9 17 212-228 9-25 (34)
211 PF11044 TMEMspv1-c74-12: Plec 29.3 9.1 0.0002 23.5 -1.3 14 215-228 4-17 (49)
212 PF01733 Nucleoside_tran: Nucl 29.1 18 0.0004 32.0 0.0 17 218-234 67-83 (309)
213 COG1422 Predicted membrane pro 28.8 42 0.00092 27.9 2.1 22 185-206 22-43 (201)
214 PRK00052 prolipoprotein diacyl 28.7 45 0.00098 29.1 2.4 23 213-235 237-259 (269)
215 PRK12437 prolipoprotein diacyl 28.7 51 0.0011 28.8 2.7 23 212-234 234-256 (269)
216 TIGR02830 spore_III_AG stage I 28.5 60 0.0013 26.8 2.9 15 216-230 9-23 (186)
217 COG5062 Uncharacterized membra 28.4 3E+02 0.0065 25.3 7.4 38 221-258 68-106 (429)
218 TIGR02205 septum_zipA cell div 28.2 53 0.0011 29.0 2.7 20 218-238 8-27 (284)
219 PF10710 DUF2512: Protein of u 28.1 2.9E+02 0.0063 21.5 7.4 37 165-201 35-72 (136)
220 PF12768 Rax2: Cortical protei 28.1 46 0.001 29.3 2.4 38 222-270 243-281 (281)
221 PF15108 TMEM37: Voltage-depen 28.0 3.2E+02 0.0069 22.0 7.1 69 65-134 93-165 (184)
222 PF01528 Herpes_glycop: Herpes 27.8 19 0.00042 33.0 -0.1 15 4-18 10-24 (374)
223 PRK15049 L-asparagine permease 27.6 75 0.0016 30.3 3.9 70 192-271 423-492 (499)
224 PF04145 Ctr: Ctr copper trans 26.5 37 0.0008 26.1 1.3 10 214-223 23-32 (144)
225 PF09050 SNN_linker: Stannin u 26.2 29 0.00063 18.3 0.4 11 253-263 6-16 (26)
226 KOG2153 Protein involved in th 25.9 29 0.00064 33.9 0.8 22 247-268 148-169 (704)
227 PRK10263 DNA translocase FtsK; 25.6 9.1E+02 0.02 26.4 13.6 23 170-192 143-165 (1355)
228 PF14880 COX14: Cytochrome oxi 25.5 8.5 0.00018 25.3 -2.1 25 211-235 14-38 (59)
229 PF05454 DAG1: Dystroglycan (D 25.4 23 0.00051 31.3 0.0 50 216-265 152-204 (290)
230 KOG1607 Protein transporter of 25.3 76 0.0016 28.5 3.1 28 204-231 249-276 (318)
231 COG1971 Predicted membrane pro 25.0 1.6E+02 0.0034 24.4 4.7 39 191-229 44-83 (190)
232 PF03773 DUF318: Predicted per 24.9 1.7E+02 0.0036 25.9 5.4 41 197-237 96-138 (307)
233 PF15176 LRR19-TM: Leucine-ric 24.7 1.2E+02 0.0026 22.3 3.5 13 214-226 16-28 (102)
234 COG5505 Predicted integral mem 24.3 5.3E+02 0.012 23.3 12.1 41 141-184 73-113 (384)
235 PF05313 Pox_P21: Poxvirus P21 24.3 3.4E+02 0.0073 22.3 6.4 51 190-241 119-169 (189)
236 PHA03237 envelope glycoprotein 23.7 45 0.00097 31.2 1.5 15 4-18 21-35 (424)
237 PF03137 OATP: Organic Anion T 23.6 26 0.00057 33.8 0.0 22 219-240 235-256 (539)
238 PRK13955 mscL large-conductanc 23.5 1.4E+02 0.0031 23.1 4.0 20 214-233 65-86 (130)
239 COG1288 Predicted membrane pro 23.3 1.1E+02 0.0025 28.8 4.0 19 211-229 214-232 (481)
240 PF05393 Hum_adeno_E3A: Human 23.3 75 0.0016 22.7 2.2 37 213-250 35-71 (94)
241 PF08592 DUF1772: Domain of un 23.2 3E+02 0.0064 20.7 5.9 30 211-240 61-90 (139)
242 PF06963 FPN1: Ferroportin1 (F 22.9 6.4E+02 0.014 23.7 12.6 45 165-209 300-344 (432)
243 KOG1834 Calsyntenin [Extracell 22.8 60 0.0013 32.1 2.1 6 223-228 843-848 (952)
244 PF06379 RhaT: L-rhamnose-prot 22.4 6E+02 0.013 23.2 18.3 101 8-108 76-190 (344)
245 PF12597 DUF3767: Protein of u 22.3 14 0.0003 28.1 -1.8 25 211-235 64-88 (118)
246 PF03248 Rer1: Rer1 family; I 21.7 43 0.00093 27.4 0.8 11 261-271 92-102 (176)
247 COG3366 Uncharacterized protei 21.6 3.4E+02 0.0073 24.4 6.4 34 197-230 109-142 (311)
248 PF11027 DUF2615: Protein of u 21.5 1.5E+02 0.0033 21.9 3.6 20 217-236 56-75 (103)
249 KOG4831 Unnamed protein [Funct 21.5 2.6E+02 0.0057 20.9 4.8 60 173-232 64-124 (125)
250 PF09534 Trp_oprn_chp: Tryptop 21.4 1.3E+02 0.0029 24.8 3.7 21 216-236 125-146 (189)
251 PRK12933 secD preprotein trans 20.5 7.2E+02 0.016 24.6 8.9 39 192-231 469-508 (604)
252 COG2116 FocA Formate/nitrite f 20.2 5.9E+02 0.013 22.3 10.9 27 212-238 236-262 (265)
253 PF11714 Inhibitor_I53: Thromb 20.0 82 0.0018 21.4 1.8 13 257-269 49-61 (78)
No 1
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=100.00 E-value=2.3e-34 Score=255.81 Aligned_cols=235 Identities=34% Similarity=0.587 Sum_probs=214.0
Q ss_pred CCchhhHHHHHHHHHHHHHhhhHhhcCcchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhccC
Q 024166 2 MNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLAD 81 (271)
Q Consensus 2 ~~~~~~~~~~~~l~~~~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~ 81 (271)
..|+++|++.+++++++..++|.|++|+|+|+++++|+++|++|++++.++ +|||++++|+++++++++|++++..+|
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~--~~k~y~~~~~~~v~li~~Gv~~~~~~~ 138 (303)
T PF08449_consen 61 KIPLKKYAILSFLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLI--LGKRYSRRQYLSVLLITIGVAIFTLSD 138 (303)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHh--cCccccHHHHHHHHHHHhhHheeeecc
Confidence 468999999999999999999999999999999999999999999999999 999999999999999999999998876
Q ss_pred CCCCCC------chHHHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhh--cccHHHHHHH
Q 024166 82 AQTSPN------FSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLL--TGELFKAWNS 153 (271)
Q Consensus 82 ~~~~~~------~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 153 (271)
.+...+ ++..|++++++|.+++|+..++|||++++++. ++.++++|++++++++.++.... .++..+...+
T Consensus 139 ~~~~~~~~~~~~~~~~G~~ll~~sl~~~a~~~~~qe~~~~~~~~-~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f 217 (303)
T PF08449_consen 139 SSSSSSSNSSSFSSALGIILLLLSLLLDAFTGVYQEKLFKKYGK-SPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRF 217 (303)
T ss_pred cccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHH
Confidence 543211 22349999999999999999999999998764 57899999999999988777666 7787777777
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhc
Q 024166 154 CSQHLYVYGVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLL 233 (271)
Q Consensus 154 ~~~~~~~~~~l~l~~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~ 233 (271)
...+|..+..+.+.++++++++...+.+++++||++.+++.++|+++++++|+++|||++++.+|+|+++++.|..+|.+
T Consensus 218 ~~~~p~~~~~l~~~s~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~ 297 (303)
T PF08449_consen 218 ISAHPSVLLYLLLFSLTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSY 297 (303)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHH
Confidence 78889888888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCc
Q 024166 234 PADDKP 239 (271)
Q Consensus 234 ~k~~~~ 239 (271)
.|+|++
T Consensus 298 ~~~k~~ 303 (303)
T PF08449_consen 298 AKKKKN 303 (303)
T ss_pred hhccCC
Confidence 887653
No 2
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.9e-33 Score=227.76 Aligned_cols=229 Identities=29% Similarity=0.475 Sum_probs=208.8
Q ss_pred chhhHHHHHHHHHHHHHhhhHhhcCcchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhccCCC
Q 024166 4 PWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQ 83 (271)
Q Consensus 4 ~~~~~~~~~~l~~~~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~~~ 83 (271)
|-+.|+..++-|.++...+|.|+||+|+|++.+.||++|++|++++.++ .|++.+++++.+++.+++|++++.+.+++
T Consensus 84 ~~~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~--~~KsY~w~kY~cVL~IV~GValFmYK~~K 161 (337)
T KOG1580|consen 84 PTKMYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLF--AHKSYHWRKYCCVLMIVVGVALFMYKENK 161 (337)
T ss_pred cchHHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhh--hcccccHHHHHHHHHHHHHHHHhhccccc
Confidence 5567999999999999999999999999999999999999999999999 89999999999999999999999887654
Q ss_pred CC---CCchHHHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcccHHHHHHHhhhchHH
Q 024166 84 TS---PNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYV 160 (271)
Q Consensus 84 ~~---~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (271)
.. +...-.|-++.++|..++|+....|+++.+.+++ +..+||+|.|+++.+.+...++++||+++...+..+||..
T Consensus 162 v~g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~-~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~RhP~~ 240 (337)
T KOG1580|consen 162 VGGAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQR-TGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRHPYV 240 (337)
T ss_pred cCCCcccccchHHHHHHHHHHhcccchhHHHHHHHhhcc-CchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhccHH
Confidence 32 2345789999999999999999999998776643 4568999999999988888888999999988888999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhccC
Q 024166 161 YGVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPA 235 (271)
Q Consensus 161 ~~~l~l~~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~k 235 (271)
|..+.+.++++++|+.+.|..+...||.++|++++.++.++++.|+++|+++++.+||+|..+++.|...-....
T Consensus 241 ~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~~G 315 (337)
T KOG1580|consen 241 FWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVVDG 315 (337)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhhcC
Confidence 888888889999999999999999999999999999999999999999999999999999999999988776543
No 3
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.1e-33 Score=231.84 Aligned_cols=265 Identities=46% Similarity=0.773 Sum_probs=232.8
Q ss_pred CCCchhhHHHHHHHHHHHHHhhhHhhcCcchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhcc
Q 024166 1 MMNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLA 80 (271)
Q Consensus 1 ~~~~~~~~~~~~~l~~~~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~ 80 (271)
+++|||.|..++++..+...++|-++.|+++|++.++|+|+.++|++.+.++ =++|.++.++.+..+..+|+.++...
T Consensus 102 r~iP~rtY~~la~~t~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifI--qGkRY~v~d~~aA~lm~lGli~FTLA 179 (367)
T KOG1582|consen 102 RVIPWRTYVILAFLTVGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFI--QGKRYGVHDYIAAMLMSLGLIWFTLA 179 (367)
T ss_pred eecchhHhhhhHhhhhhccccCcCccccccCcHHHHHHhhhhhhhhheeeee--ccccccHHHHHHHHHHHHHHHhhhhc
Confidence 4799999999999999999999999999999999999999999999999999 57889999999999999999999999
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcccHHHHHHHhhhchH-
Q 024166 81 DAQTSPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLY- 159 (271)
Q Consensus 81 ~~~~~~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 159 (271)
|++.++|++..|+.++-.|.+++|....+||+.+++++. +..++++|+..++.++++....++|+++..+.++.+||.
T Consensus 180 Ds~~sPNF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~-ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~ 258 (367)
T KOG1582|consen 180 DSQTSPNFNLIGVMMISGALLADAVIGNVQEKAMKMNPA-SSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVR 258 (367)
T ss_pred ccccCCCcceeeHHHHHHHHHHHHHhhHHHHHHHhhCCC-CcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHh
Confidence 999889999999999999999999999999999998864 458999999999999988888899999999999999996
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhccCCCCc
Q 024166 160 VYGVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKP 239 (271)
Q Consensus 160 ~~~~l~l~~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~k~~~~ 239 (271)
.+.+.++.++.+.+|+.++...++..||..++.+++.|+..++++|+++|..|+|.+..-|..++..|+++..+.|+.|.
T Consensus 259 tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk~nk~ 338 (367)
T KOG1582|consen 259 TYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSKRNKI 338 (367)
T ss_pred HHHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccCCCCC
Confidence 67778888889999999999999999999999999999999999999999999999999999999999999998874333
Q ss_pred ccccccCCCccceeccccccchhhhhhhcCCC
Q 024166 240 IKRTATSSFKVNIRKLSFSEREEADEEKRAPV 271 (271)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (271)
..+. -.++.+.+.. ++-|-|+|+|++++|
T Consensus 339 ~~~~--~~~r~~~~~~-g~~~~~~~r~~~~~V 367 (367)
T KOG1582|consen 339 PLAS--LIRRIVARAA-GKVDRSVDRKDPMLV 367 (367)
T ss_pred chhh--HHhhhhhhhc-cccccccccccccCC
Confidence 3221 1222221222 444555566666654
No 4
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.2e-32 Score=230.28 Aligned_cols=233 Identities=28% Similarity=0.466 Sum_probs=215.9
Q ss_pred CCchhhHHHHHHHHHHHHHhhhHhhcCcchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhccC
Q 024166 2 MNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLAD 81 (271)
Q Consensus 2 ~~~~~~~~~~~~l~~~~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~ 81 (271)
..||++|..+|+.+.++.++.+.||+|+++|++++.||++.+||++++.++ .|+|++..++++.+++..|+.++...+
T Consensus 80 ~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lv--y~~ky~~~eYl~~~LIs~GvsiF~l~~ 157 (327)
T KOG1581|consen 80 VAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLV--YGRKYSSFEYLVAFLISLGVSIFSLFP 157 (327)
T ss_pred CCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHH--hcCccCcHHHHHHHHHHhheeeEEEec
Confidence 469999999999999999999999999999999999999999999999999 899999999999999999999998764
Q ss_pred CCC----C-CCchHHHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcccHHHHHHHhhh
Q 024166 82 AQT----S-PNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQ 156 (271)
Q Consensus 82 ~~~----~-~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (271)
.+. . ..+...|+.++..+..++|+.+..|++++++. +.+++++|++.|++++++...+++..|.+.+...+...
T Consensus 158 ~s~s~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~-k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~ 236 (327)
T KOG1581|consen 158 NSDSSSKSGRENSPIGILLLFGYLLFDGFTNATQDSLFKKY-KVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKE 236 (327)
T ss_pred CCCCccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhccC-CccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHc
Confidence 432 1 24789999999999999999999999999865 46789999999999999888887888888888899999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhccCC
Q 024166 157 HLYVYGVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPAD 236 (271)
Q Consensus 157 ~~~~~~~l~l~~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~k~ 236 (271)
||+.+..+.+.+.|+++||.+.++.+++.|+.+.+++.+.|+++++.+|.+.||+++++.||.|..+++.|+++-...|.
T Consensus 237 hp~~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~ 316 (327)
T KOG1581|consen 237 HPDVAFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKK 316 (327)
T ss_pred ChhHHHHHHHHHHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998877665
Q ss_pred C
Q 024166 237 D 237 (271)
Q Consensus 237 ~ 237 (271)
+
T Consensus 317 ~ 317 (327)
T KOG1581|consen 317 K 317 (327)
T ss_pred h
Confidence 5
No 5
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.97 E-value=2.3e-28 Score=217.19 Aligned_cols=227 Identities=17% Similarity=0.175 Sum_probs=180.3
Q ss_pred chhhHHHHHHHHHHHHHhhhHhhcCcchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhccCCC
Q 024166 4 PWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQ 83 (271)
Q Consensus 4 ~~~~~~~~~~l~~~~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~~~ 83 (271)
.|+.++++|++++.+..++|.+++|+++++++++++++|++++++++++ +|||++++++++++++++|+++...++.
T Consensus 64 ~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~--~~e~~~~~~~~~l~l~~~Gv~l~~~~~~- 140 (302)
T TIGR00817 64 LLKLLLPVAIVHTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFF--LGQEFPSTLWLSLLPIVGGVALASDTEL- 140 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHH--hCCCCcHHHHHHHHHHHHHHhhhcCCcc-
Confidence 4667899999998899999999999999999999999999999999999 9999999999999999999987653332
Q ss_pred CCCCchHHHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcccHHHHH-HHhh----hch
Q 024166 84 TSPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAW-NSCS----QHL 158 (271)
Q Consensus 84 ~~~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~ 158 (271)
+++..|++++++|+++++++.++.||..++ ++.++.++.+|++..+++.++|.....++..... .... ..+
T Consensus 141 ---~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~-~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~ 216 (302)
T TIGR00817 141 ---SFNWAGFLSAMISNITFVSRNIFSKKAMTI-KSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNV 216 (302)
T ss_pred ---cccHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCc
Confidence 345789999999999999999999987663 2345678888999888877777655433221111 0100 011
Q ss_pred -HHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhccCC
Q 024166 159 -YVYGVLVFEA-MATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPAD 236 (271)
Q Consensus 159 -~~~~~l~l~~-~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~k~ 236 (271)
..+......+ .+....+..++.+++++||+++++.++++|++++++|++++||++|+.+++|.++++.|+++|++.|.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~ 296 (302)
T TIGR00817 217 TKIYTVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKA 296 (302)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhc
Confidence 1222122222 23334456778899999999999999999999999999999999999999999999999999997654
Q ss_pred C
Q 024166 237 D 237 (271)
Q Consensus 237 ~ 237 (271)
+
T Consensus 297 ~ 297 (302)
T TIGR00817 297 Q 297 (302)
T ss_pred c
Confidence 3
No 6
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.96 E-value=1.1e-27 Score=212.95 Aligned_cols=231 Identities=17% Similarity=0.222 Sum_probs=192.8
Q ss_pred CchhhHHHHHHHHHHHHHhhhHhhcCcchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhccCC
Q 024166 3 NPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADA 82 (271)
Q Consensus 3 ~~~~~~~~~~~l~~~~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~~ 82 (271)
.||++|+.++++.+.++++.+.|++|++++..+++++++.++++++++++ +|+|+++.|++|++++++|++++...|.
T Consensus 77 ~~~w~y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~f--L~~ry~~~~~~gv~i~i~Gv~lv~~sD~ 154 (334)
T PF06027_consen 77 RPWWKYFLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIF--LKRRYSWFHILGVLICIAGVVLVVVSDV 154 (334)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHH--HHhhhhHHHHHHHHHHHhhhhheeeecc
Confidence 58899999999999999999999999999999999999999999999999 9999999999999999999999888764
Q ss_pred CC-----CCCchHHHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHh-hcccHHHHHHHhhh
Q 024166 83 QT-----SPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPML-LTGELFKAWNSCSQ 156 (271)
Q Consensus 83 ~~-----~~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 156 (271)
.. .+++...|+++++.|+.+||++++++|+..++. +..+.+....++++++..+... ++.+ .....++
T Consensus 155 ~~~~~~~~~~~~i~GDll~l~~a~lya~~nV~~E~~v~~~---~~~~~lg~~Glfg~ii~~iq~~ile~~---~i~~~~w 228 (334)
T PF06027_consen 155 LSGSDSSSGSNPILGDLLALLGAILYAVSNVLEEKLVKKA---PRVEFLGMLGLFGFIISGIQLAILERS---GIESIHW 228 (334)
T ss_pred cccccCCCCCccchhHHHHHHHHHHHHHHHHHHHHhcccC---CHHHHHHHHHHHHHHHHHHHHHheehh---hhhccCC
Confidence 32 234679999999999999999999999988764 3566676777777776655433 3322 2222233
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhccCC
Q 024166 157 HLYVYGVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPAD 236 (271)
Q Consensus 157 ~~~~~~~l~l~~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~k~ 236 (271)
++..+.++....++.++.+.+....++..||+..++.....++.++++++++||+++++..++|.++++.|..+|+..++
T Consensus 229 ~~~~~~~~v~~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~ 308 (334)
T PF06027_consen 229 TSQVIGLLVGYALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAES 308 (334)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCC
Confidence 44445555555677777788889999999999999999999999999999999999999999999999999999997665
Q ss_pred CCccc
Q 024166 237 DKPIK 241 (271)
Q Consensus 237 ~~~~~ 241 (271)
+..++
T Consensus 309 ~~~~~ 313 (334)
T PF06027_consen 309 PEEEA 313 (334)
T ss_pred ccccc
Confidence 44433
No 7
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.96 E-value=9.9e-27 Score=210.53 Aligned_cols=225 Identities=15% Similarity=0.191 Sum_probs=177.1
Q ss_pred hhhHHHHHHHHHHHHHhhhHhhcCcchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhccCCCC
Q 024166 5 WKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQT 84 (271)
Q Consensus 5 ~~~~~~~~~l~~~~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~~~~ 84 (271)
||.+.++|+++.......+.|++++++++++++|++.|++++++++++ +|||++++++++++++++|+.+.+.++.
T Consensus 114 ~~~llp~gl~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~--l~ek~s~~~~l~l~l~v~Gv~l~~~~~~-- 189 (350)
T PTZ00343 114 LKNFLPQGLCHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILF--LKQFLNLYAYLSLIPIVGGVALASVKEL-- 189 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHH--hCCCccHHHHHHHHHHHHHHHheecccc--
Confidence 567899999998877788999999999999999999999999999999 9999999999999999999999876543
Q ss_pred CCCchHHHHHHHHHHHHHHHhhHhHHHHHHhhCC----CCChhhHHHHHHHhhHHHHHHHHh-hcccH-HHHHHHh-hh-
Q 024166 85 SPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNP----ETTQMEMLFCSTVVGLPMLIPPML-LTGEL-FKAWNSC-SQ- 156 (271)
Q Consensus 85 ~~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~-~~- 156 (271)
+.++.|++++++|++++++++++.|+.+++.+ +.++.+...++.+++.++++|... .++.- ...+... ..
T Consensus 190 --~~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~ 267 (350)
T PTZ00343 190 --HFTWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANM 267 (350)
T ss_pred --hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcc
Confidence 35688999999999999999999999887542 233444555667778777777644 32211 1111100 00
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH----HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHh
Q 024166 157 HLYVYGVLVFEAMATFIGQVSVL----SLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKL 232 (271)
Q Consensus 157 ~~~~~~~l~l~~~~~~~~~~~~~----~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~ 232 (271)
....+..+....+.+.+.+.+++ +++++++|.++++.+++||++++++|++++||++|+.+++|.++++.|+++|+
T Consensus 268 ~~~~~~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs 347 (350)
T PTZ00343 268 TNYTKGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYS 347 (350)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHh
Confidence 11111111222344456665555 69999999999999999999999999999999999999999999999999998
Q ss_pred ccC
Q 024166 233 LPA 235 (271)
Q Consensus 233 ~~k 235 (271)
+.|
T Consensus 348 ~~k 350 (350)
T PTZ00343 348 LFK 350 (350)
T ss_pred hcC
Confidence 764
No 8
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.95 E-value=3.9e-26 Score=206.51 Aligned_cols=226 Identities=12% Similarity=0.094 Sum_probs=167.9
Q ss_pred hHHHHHHHHHHHHHhhhHhhcCcchhHHHHHhhcchHHHHHHHHhhccc------ccccChhhHHHHHHHHHHHHHHhcc
Q 024166 7 TYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGL------RRKYPAHEYVSALLLVVGLILFTLA 80 (271)
Q Consensus 7 ~~~~~~~l~~~~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l------~e~~~~~~~l~~~l~~~Gv~v~~~~ 80 (271)
.+..++++.+....+.+.+++|++.+.+.++.++.|++++++++++ + |||.+++++++++++++|+.++..+
T Consensus 80 ~l~l~g~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~--~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~ 157 (358)
T PLN00411 80 KIGLLGFLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIF--RMEKVSFKERSSVAKVMGTILSLIGALVVIFY 157 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHH--HhchhhhcccccHHHHHHHHHHHHHHHHHHHc
Confidence 3555555554455688999999999999999999999999999999 4 8999999999999999999987653
Q ss_pred CCC---------------------CCCCchHHHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHh-hHHHHH
Q 024166 81 DAQ---------------------TSPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVV-GLPMLI 138 (271)
Q Consensus 81 ~~~---------------------~~~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 138 (271)
+.. ...+....|+++++.|+++|+++++++++..++++. .....++...+ +.+...
T Consensus 158 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~--~~~~t~~~~~~~~~~~~~ 235 (358)
T PLN00411 158 HGPRVFVASSPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPA--AFTVSFLYTVCVSIVTSM 235 (358)
T ss_pred cCcccccccccccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc--HhHHHHHHHHHHHHHHHH
Confidence 211 001123669999999999999999999998777542 23334444433 333333
Q ss_pred HHHhhcccHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhh
Q 024166 139 PPMLLTGELFKAWNSCSQHLYVYGVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHG 218 (271)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~ 218 (271)
+....+++-...+. ...+...+..++.+ +++.+++.+|++++++.||..++++.++.|++++++|++++||++++.++
T Consensus 236 ~~l~~~~~~~~~~~-~~~~~~~~~i~y~~-i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~ 313 (358)
T PLN00411 236 IGLVVEKNNPSVWI-IHFDITLITIVTMA-IITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCL 313 (358)
T ss_pred HHHHHccCCcccce-eccchHHHHHHHHH-HHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHH
Confidence 33333321011110 11122333334433 44568999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhccCCCC
Q 024166 219 TGLLLIAMGITLKLLPADDK 238 (271)
Q Consensus 219 ~G~~lvl~Gv~l~~~~k~~~ 238 (271)
+|.++++.|+++..+.|+++
T Consensus 314 iG~~LIl~Gv~l~~~~~~~~ 333 (358)
T PLN00411 314 IGGILITLGFYAVMWGKANE 333 (358)
T ss_pred HHHHHHHHHHHHHHhhhhhh
Confidence 99999999999988654433
No 9
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=99.93 E-value=7.8e-27 Score=205.18 Aligned_cols=232 Identities=19% Similarity=0.323 Sum_probs=196.2
Q ss_pred CchhhHHHHHHHHHHHHHhhhHhhcCcchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhccCC
Q 024166 3 NPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADA 82 (271)
Q Consensus 3 ~~~~~~~~~~~l~~~~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~~ 82 (271)
.+|++.+++|+.++++.++.|.|+.|+++++++++|+++|+++.++++++ .+|+.++..+++++++..|+.+.+.+|.
T Consensus 81 ~~~~~llpl~~~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~--~~~~~s~~~~lsL~piv~GV~ias~~e~ 158 (316)
T KOG1441|consen 81 LPLRTLLPLGLVFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLL--LGKTYSSMTYLSLLPIVFGVAIASVTEL 158 (316)
T ss_pred cchHHHHHHHHHHHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHH--hCCCCcceEEEEEEEeeeeEEEeeeccc
Confidence 47899999999999999999999999999999999999999999999999 8999999999999999999999998775
Q ss_pred CCCCCchHHHHHHHHHHHHHHHhhHhHHHHHHhh-CCCCChhhHHHHHHHhhHHHHH-HHHh-hcccHHHHHHHhhhchH
Q 024166 83 QTSPNFSMIGVIMISGALIMDSFLGNLQEAIFTM-NPETTQMEMLFCSTVVGLPMLI-PPML-LTGELFKAWNSCSQHLY 159 (271)
Q Consensus 83 ~~~~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~ 159 (271)
++++.|.+.++++.+..++++++.++++++ ..+.++++++.|.+.++..+++ |... .+++....+. ...+..
T Consensus 159 ----~fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~-~~~~~~ 233 (316)
T KOG1441|consen 159 ----SFNLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFL-TAPWFV 233 (316)
T ss_pred ----cccHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeee-ccccch
Confidence 478999999999999999999999999964 3455788999999998888777 6433 2332210000 001111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhccCCCCc
Q 024166 160 VYGVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKP 239 (271)
Q Consensus 160 ~~~~l~l~~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~k~~~~ 239 (271)
....+.++.++.+.-+...|.++++++|++.++.++.|.++.+..|+++|++++|+.+..|.++.+.|+++|++.|.+++
T Consensus 234 ~~~~~~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~ 313 (316)
T KOG1441|consen 234 TFLILLLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEK 313 (316)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhh
Confidence 11223334488788889999999999999999999999999999999999999999999999999999999999887776
Q ss_pred cc
Q 024166 240 IK 241 (271)
Q Consensus 240 ~~ 241 (271)
++
T Consensus 314 ~~ 315 (316)
T KOG1441|consen 314 KG 315 (316)
T ss_pred cc
Confidence 54
No 10
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.93 E-value=4.6e-23 Score=182.96 Aligned_cols=230 Identities=13% Similarity=0.241 Sum_probs=170.4
Q ss_pred chhhHHHHHHHHH-HHHHhhhHhhcC-cchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhccC
Q 024166 4 PWKTYVKLSAVLM-GSHGLTKGSLAF-LNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLAD 81 (271)
Q Consensus 4 ~~~~~~~~~~l~~-~~~~l~~~al~~-~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~ 81 (271)
+++.....+++.. ....+.+.+++| ++.+.+.++.++.|+++.++++++ +|||++++++++++++++|+.++..++
T Consensus 57 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~--l~e~~~~~~~~~~~l~~~Gv~ll~~~~ 134 (299)
T PRK11453 57 PLNLLLGYGLTISFGQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFT--FGERLQGKQLAGIALAIFGVLVLIEDS 134 (299)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHH--hcCcCcHHHHHHHHHHHHhHHHhcccc
Confidence 3444555555443 344566788888 688899999999999999999999 999999999999999999999887543
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHH-HHHHHHhhcccHHHHHHHhhhchH-
Q 024166 82 AQTSPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLP-MLIPPMLLTGELFKAWNSCSQHLY- 159 (271)
Q Consensus 82 ~~~~~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~- 159 (271)
.+ ..+.++.|+++++.++++++.+.+++|+..++.+........++....+.. +.......+++..........++.
T Consensus 135 ~~-~~~~~~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (299)
T PRK11453 135 LN-GQHVAMLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTT 213 (299)
T ss_pred CC-CcchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHH
Confidence 22 123356799999999999999999999875544322223333444444322 222212223321100111112333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhccCC
Q 024166 160 VYGVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPAD 236 (271)
Q Consensus 160 ~~~~l~l~~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~k~ 236 (271)
++..+++..+++++++.+|++++++.+|.+++++..++|+++.+++++++||++++.+++|.++++.|+++..+.++
T Consensus 214 ~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~ 290 (299)
T PRK11453 214 ILSLMYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLR 290 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchh
Confidence 34566777899999999999999999999999999999999999999999999999999999999999998887664
No 11
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=99.92 E-value=2.8e-25 Score=187.04 Aligned_cols=232 Identities=24% Similarity=0.430 Sum_probs=198.2
Q ss_pred CCchhhHHHHHHHHHHHHHhhhHhhcC-cchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhcc
Q 024166 2 MNPWKTYVKLSAVLMGSHGLTKGSLAF-LNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLA 80 (271)
Q Consensus 2 ~~~~~~~~~~~~l~~~~~~l~~~al~~-~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~ 80 (271)
++|.|.|+.....++..+.++|+++++ ++.|...++||-+++.++++++++ .|+|.+.+|+.+++.+.+|+.+.+..
T Consensus 61 kiplk~Y~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il--~~k~Ys~~Qy~Sv~~iTiGiiIcTl~ 138 (330)
T KOG1583|consen 61 KIPLKDYAITVAMFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWIL--LGKRYSLRQYSSVLMITIGIIICTLF 138 (330)
T ss_pred CCchhhhheehheeeeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHh--ccceeehhhhhhHHhhhhhheeEEee
Confidence 579999999999999999999999999 999999999999999999999999 89999999999999999999988764
Q ss_pred CCCC---------CC------CchHHHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcc
Q 024166 81 DAQT---------SP------NFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTG 145 (271)
Q Consensus 81 ~~~~---------~~------~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (271)
..+. .+ ..+..|+.+..++.+..+...++||+.++|++++ +-+.+||+...++|.++ ++.+
T Consensus 139 s~~d~~~~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh-~~EalFytH~LsLP~Fl---f~~~ 214 (330)
T KOG1583|consen 139 SSKDGRSKLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQKYGKH-WKEALFYTHFLSLPLFL---FMGD 214 (330)
T ss_pred cCcchhhhhcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-hHHHHHHHHHhccchHH---Hhcc
Confidence 3211 00 1357899999999999999999999999999875 67899999999988764 4555
Q ss_pred cHHHHHHHhhhc------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCc
Q 024166 146 ELFKAWNSCSQH------------LYVYGVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPL 213 (271)
Q Consensus 146 ~~~~~~~~~~~~------------~~~~~~l~l~~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~ 213 (271)
|+.+.+.....+ |..|.++..+++.+.+..--++....++++++++++-++|+.++.++|.+.|.+++
T Consensus 215 div~~~~~~~~se~~~~p~~g~~vP~~~~yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npf 294 (330)
T KOG1583|consen 215 DIVSHWRLAFKSESYLIPLLGFKVPSMWVYLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPF 294 (330)
T ss_pred hHHHHHHHHhcCcceeccccCccccHHHHHHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCC
Confidence 666555443332 45577777777777777777788889999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHhccCCCCc
Q 024166 214 TEQHGTGLLLIAMGITLKLLPADDKP 239 (271)
Q Consensus 214 s~~~~~G~~lvl~Gv~l~~~~k~~~~ 239 (271)
|+.+|+|..+|+.|-.+|.....+++
T Consensus 295 t~~h~lGa~lVF~Gt~~fa~~~~~~~ 320 (330)
T KOG1583|consen 295 TPWHWLGAALVFFGTLLFANVWNHPK 320 (330)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 99999999999999999976655444
No 12
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.91 E-value=2.2e-22 Score=174.59 Aligned_cols=213 Identities=15% Similarity=0.113 Sum_probs=170.5
Q ss_pred chhhHHHHHHHH-HHHHHhhhHhhcCcchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhccCC
Q 024166 4 PWKTYVKLSAVL-MGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADA 82 (271)
Q Consensus 4 ~~~~~~~~~~l~-~~~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~~ 82 (271)
+++.+...+.+. .++..+.+.|++|++.+...++.++.|+++++++.++ +|||++++++.+++++++|+.++..++.
T Consensus 45 ~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~--~~e~~~~~~~~gi~i~~~Gv~li~~~~~ 122 (260)
T TIGR00950 45 RLLRLLLLGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLM--GKERPRKLVLLAAVLGLAGAVLLLSDGN 122 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHH--ccCCCcHHHHHHHHHHHHhHHhhccCCc
Confidence 345566666654 5678899999999999999999999999999999999 9999999999999999999998865432
Q ss_pred CCCCCchHHHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcccHHHHHHHhhhchHHH-
Q 024166 83 QTSPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVY- 161 (271)
Q Consensus 83 ~~~~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 161 (271)
.+.+..|+++.+.++++++.+.++.|+..++.+. ++.....+...++.+++.+.....++.. ..++..|
T Consensus 123 ---~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~------~~~~~~~~ 192 (260)
T TIGR00950 123 ---LSINPAGLLLGLGSGISFALGTVLYKRLVKKEGP-ELLQFTGWVLLLGALLLLPFAWFLGPNP------QALSLQWG 192 (260)
T ss_pred ---ccccHHHHHHHHHHHHHHHHHHHHHhHHhhcCCc-hHHHHHHHHHHHHHHHHHHHHHhcCCCC------CcchHHHH
Confidence 2346789999999999999999999887654321 2233333556666666665544433211 0122233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHH
Q 024166 162 GVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGI 228 (271)
Q Consensus 162 ~~l~l~~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv 228 (271)
..+++..+++.+++.++++++++.++.+++++..++|+++.+++++++||++++.+++|..+++.|+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 193 ALLYLGLIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 4556666778899999999999999999999999999999999999999999999999999999986
No 13
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=99.91 E-value=1e-23 Score=180.11 Aligned_cols=227 Identities=20% Similarity=0.304 Sum_probs=182.7
Q ss_pred CCchhhHH----HHHHHHHHHHHhhhHhhcCcchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHH
Q 024166 2 MNPWKTYV----KLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILF 77 (271)
Q Consensus 2 ~~~~~~~~----~~~~l~~~~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~ 77 (271)
+..|++|+ +.+++..+.+.++|++++|++++.|++.||++++|+.+++..++ -||+++.-.+.++++.+|++++
T Consensus 77 ~~sw~~~Lr~~aPtalata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~--lEk~~w~L~l~v~lI~~Glflf 154 (349)
T KOG1443|consen 77 VLSWRDYLRRLAPTALATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFK--LEKFRWALVLIVLLIAVGLFLF 154 (349)
T ss_pred CCcHHHHHHHhhhhhhhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHH--hHHHHHHHHHHHHHHhhheeEE
Confidence 34677666 99999999999999999999999999999999999999999993 5999999999999999999999
Q ss_pred hccCCCCCCCchHHHHHHHHHHHHHHHhhHhHHHHHHhhCC--CCChhhHHHHHHHhhHHHHHHH-HhhcccHHHHH--H
Q 024166 78 TLADAQTSPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNP--ETTQMEMLFCSTVVGLPMLIPP-MLLTGELFKAW--N 152 (271)
Q Consensus 78 ~~~~~~~~~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~ 152 (271)
++.+. +++..|..+++.|+++.|+++++.++++++++ +.+|..++++.+.+....++|. +.++|...... .
T Consensus 155 t~KsT----qf~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~ 230 (349)
T KOG1443|consen 155 TYKST----QFNIEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSI 230 (349)
T ss_pred Eeccc----ceeehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhH
Confidence 88653 47899999999999999999999999998875 3467888888777665555543 45666532211 1
Q ss_pred Hhhhch-HHHHH---HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHH
Q 024166 153 SCSQHL-YVYGV---LVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGI 228 (271)
Q Consensus 153 ~~~~~~-~~~~~---l~l~~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv 228 (271)
+....+ ..+.. +.+.+..+++-..+-+....+++..+.++++..|.+.+.+++..+.+|++|..+|+|..+++.|+
T Consensus 231 f~~~d~~~~~rv~g~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi 310 (349)
T KOG1443|consen 231 FRFQDTGLILRVIGLISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGI 310 (349)
T ss_pred HHhcCccHHHHHHHHHHHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHH
Confidence 111122 33433 33333333333455688899999999999999999999999999999999999999999999999
Q ss_pred HHHhcc
Q 024166 229 TLKLLP 234 (271)
Q Consensus 229 ~l~~~~ 234 (271)
.++...
T Consensus 311 ~~~~~~ 316 (349)
T KOG1443|consen 311 LLHRNE 316 (349)
T ss_pred HHhccC
Confidence 999443
No 14
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.90 E-value=4.9e-22 Score=176.07 Aligned_cols=215 Identities=13% Similarity=0.038 Sum_probs=158.3
Q ss_pred HHHHHHH-HHHHHHhhhHhhcC----cchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhccCC
Q 024166 8 YVKLSAV-LMGSHGLTKGSLAF----LNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADA 82 (271)
Q Consensus 8 ~~~~~~l-~~~~~~l~~~al~~----~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~~ 82 (271)
....+.+ +++...+.+.+++| ++.....++.++.|++++++++++ +|||++++++++++++++|++++..++.
T Consensus 63 ~~~~~~l~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~--~~e~~~~~~~~g~~l~~~Gv~li~~~~~ 140 (295)
T PRK11689 63 YLLAGGLLFVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLF--NGQKANWLLIPGLLLALAGVAWVLGGDN 140 (295)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHH--hcCCccHHHHHHHHHHHHhHhheecCCc
Confidence 3444444 34556666777654 566777889999999999999999 8999999999999999999998875543
Q ss_pred CCC-------CCchHHHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcccHHHHHHHhh
Q 024166 83 QTS-------PNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCS 155 (271)
Q Consensus 83 ~~~-------~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (271)
... ...+..|+++++.++++++.+.++.||..++. ++....+ ..+...+.+.....++. . ..
T Consensus 141 ~~~~~~~~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~~---~~~~~~~---~~~~~~l~~~~~~~~~~-~----~~ 209 (295)
T PRK11689 141 GLSLAELINNIASNPLSYGLAFIGAFIWAAYCNVTRKYARGK---NGITLFF---ILTALALWIKYFLSPQP-A----MV 209 (295)
T ss_pred cchhhhhhhccccChHHHHHHHHHHHHHHHHHHHHhhccCCC---CchhHHH---HHHHHHHHHHHHHhcCc-c----cc
Confidence 110 01245799999999999999999998864433 2333221 11222222221222221 0 11
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhccC
Q 024166 156 QHLYVYGVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPA 235 (271)
Q Consensus 156 ~~~~~~~~l~l~~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~k 235 (271)
.+++.|..+...++++.+++.+|++++++.+|.++++..+++|+++++++++++||++++.+++|.++++.|+++..+..
T Consensus 210 ~~~~~~~~l~~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~ 289 (295)
T PRK11689 210 FSLPAIIKLLLAAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLAT 289 (295)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhH
Confidence 23344544445557889999999999999999999999999999999999999999999999999999999998876543
No 15
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=1.3e-25 Score=188.90 Aligned_cols=242 Identities=15% Similarity=0.140 Sum_probs=210.4
Q ss_pred hhhHHHHHHHHHHHHHhhhHhhcCcchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhccCCCC
Q 024166 5 WKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQT 84 (271)
Q Consensus 5 ~~~~~~~~~l~~~~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~~~~ 84 (271)
.|+..++++.+.+++..+|+.|+|+++++|.+.|+.+.+|++++++++ +|+|-+.....++++++.|-.+=+-.++.
T Consensus 102 ~r~vlplsvVfi~mI~fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvl--lkqkTs~~~~~~C~lIi~GF~lGvdqE~~- 178 (347)
T KOG1442|consen 102 ARQVLPLSVVFILMISFNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVL--LKQKTSFFALGCCLLIILGFGLGVDQEGS- 178 (347)
T ss_pred HHhhcchhheeeeehhccceehhhcceEEEEeccchhhhHHHHhHHhh--cccccccccceeehhheehheeccccccc-
Confidence 467889999999999999999999999999999999999999999999 99999999999999999998765433322
Q ss_pred CCCchHHHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcccHHHHHHHhhh-chHHHHH
Q 024166 85 SPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQ-HLYVYGV 163 (271)
Q Consensus 85 ~~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 163 (271)
.+...+.|.++.+.|+++-++..++.||......+ ..+.+.+|+|+.++++++|.++++||+.+.+.+.+. ..+.|..
T Consensus 179 ~~~ls~~GvifGVlaSl~vAlnaiytkk~l~~v~~-~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~ 257 (347)
T KOG1442|consen 179 TGTLSWIGVIFGVLASLAVALNAIYTKKVLPPVGD-CIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWIL 257 (347)
T ss_pred cCccchhhhHHHHHHHHHHHHHHHhhheecccccC-eehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHH
Confidence 23468999999999999999999998876554332 357888999999999999999999998877765444 2356788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhccCCCCccccc
Q 024166 164 LVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKPIKRT 243 (271)
Q Consensus 164 l~l~~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~k~~~~~~~~ 243 (271)
+.+++++++.-.....+-+|.+||.+.++.++.|.+..++++..+++|..+...|.|.++++.|...|.+.|+++++|++
T Consensus 258 mtLsglfgF~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em~~~~ 337 (347)
T KOG1442|consen 258 MTLSGLFGFAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEMRKAS 337 (347)
T ss_pred HHHHHHHHHHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHHHhhc
Confidence 88888888877777888899999999999999999999999999999999999999999999999999999999999987
Q ss_pred ccCCCcc
Q 024166 244 ATSSFKV 250 (271)
Q Consensus 244 ~~~~~~~ 250 (271)
++++++.
T Consensus 338 ~~~s~~~ 344 (347)
T KOG1442|consen 338 AQRSPAT 344 (347)
T ss_pred cCCCccc
Confidence 7776654
No 16
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=2.4e-22 Score=173.61 Aligned_cols=232 Identities=19% Similarity=0.221 Sum_probs=197.0
Q ss_pred chhhHHHHHHHHHHHHHhhhHhhcCcchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhccCCC
Q 024166 4 PWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQ 83 (271)
Q Consensus 4 ~~~~~~~~~~l~~~~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~~~ 83 (271)
..|+++|++++++++...+..+++|+++++++++|..+|+.+++....+ +|+++++..|.++..+.+|......+|.+
T Consensus 76 ~~kk~~P~~~lf~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf--~~~~~~~~v~~Sv~~m~~~s~~~~~~d~s 153 (314)
T KOG1444|consen 76 TAKKWFPVSLLFVGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLF--FGKRPSNKVWASVFAMIIGSVAAAFTDLS 153 (314)
T ss_pred HHHHHccHHHHHHHHHHHccccccccCchHHHHHhhchHHHHHHhHHhh--cCcCchhhHHHHHHHHHHHHHhhccccce
Confidence 3578999999999999999999999999999999999999999999999 89999999999999999999998887753
Q ss_pred CCCCchHHHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcccHHHHHHHh---hhchHH
Q 024166 84 TSPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSC---SQHLYV 160 (271)
Q Consensus 84 ~~~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 160 (271)
.+..|+.+++.+++..+.+.++.|+..+.. +...+++++|.+++++|.+....+.+||+. ..... ...+..
T Consensus 154 ----f~~~gY~w~~~n~~~~a~~~v~~kk~vd~~-~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~-~l~~~~~~~~~~~~ 227 (314)
T KOG1444|consen 154 ----FNLRGYSWALANCLTTAAFVVYVKKSVDSA-NLNKFGLVFYNNLLSLPPLLILSFITGELD-ALSLNFDNWSDSSV 227 (314)
T ss_pred ----ecchhHHHHHHHHHHHHHHHHHHHHhhccc-cccceeEEeehhHHHHHHHHHHHHHhcchH-HHHhhcccccchhH
Confidence 456799999999999999999988766543 335688999999999998877777888865 22211 112346
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhccCCCCcc
Q 024166 161 YGVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKPI 240 (271)
Q Consensus 161 ~~~l~l~~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~k~~~~~ 240 (271)
+..+.++|++++.-.++.+.|.+..||++.++++......+.+...+++|+++++.+.+|+.+-+.|-.+|.+.+.++++
T Consensus 228 ~~~~~lScv~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k~ 307 (314)
T KOG1444|consen 228 LVVMLLSCVMGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKKK 307 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhcc
Confidence 77888999999888899999999999999999996566666666666666799999999999999999999998877766
Q ss_pred ccc
Q 024166 241 KRT 243 (271)
Q Consensus 241 ~~~ 243 (271)
.++
T Consensus 308 ~~~ 310 (314)
T KOG1444|consen 308 QPP 310 (314)
T ss_pred CCC
Confidence 654
No 17
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.89 E-value=2.4e-21 Score=171.42 Aligned_cols=217 Identities=14% Similarity=0.086 Sum_probs=166.8
Q ss_pred hhHHHHHHHH-HHHHHhhhHhh-cCcchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhccCCC
Q 024166 6 KTYVKLSAVL-MGSHGLTKGSL-AFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQ 83 (271)
Q Consensus 6 ~~~~~~~~l~-~~~~~l~~~al-~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~~~ 83 (271)
+.....+.+. .....+.+.+. ++++.+..+++.++.|+++++++. + +|||+++++++++.++++|+.++..++..
T Consensus 69 ~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~-~--~~e~~~~~~~~~~~la~~Gv~ll~~~~~~ 145 (292)
T PRK11272 69 LNAALIGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSR-L--FGIRTRKLEWLGIAIGLAGIVLLNSGGNL 145 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHH-H--hcccCchhHHHHHHHHHHhHHHHhcCccc
Confidence 3445556654 34567778888 999999999999999999999997 5 58999999999999999999988654221
Q ss_pred CCCCchHHHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcccHHHHHHHhhhchHHH-H
Q 024166 84 TSPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVY-G 162 (271)
Q Consensus 84 ~~~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 162 (271)
+....|+++.+.++++++.+.+..||..++ ++.....+....+.+.+.+.....++..+ ...++..| .
T Consensus 146 ---~~~~~G~l~~l~a~~~~a~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 214 (292)
T PRK11272 146 ---SGNPWGAILILIASASWAFGSVWSSRLPLP----VGMMAGAAEMLAAGVVLLIASLLSGERLT----ALPTLSGFLA 214 (292)
T ss_pred ---ccchHHHHHHHHHHHHHHHHHHHHHhcCCC----cchHHHHHHHHHHHHHHHHHHHHcCCccc----ccCCHHHHHH
Confidence 235679999999999999999998774322 12334455555555554443333322110 01122333 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhccCC
Q 024166 163 VLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPAD 236 (271)
Q Consensus 163 ~l~l~~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~k~ 236 (271)
.++++.+++.+++.+|++++++.++...++...++|+++.+++++++||++|+.+++|.++++.|+++..+.++
T Consensus 215 i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~ 288 (292)
T PRK11272 215 LGYLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKY 288 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 56666678899999999999999999999999999999999999999999999999999999999998876544
No 18
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.88 E-value=6.1e-21 Score=169.12 Aligned_cols=208 Identities=13% Similarity=0.150 Sum_probs=153.3
Q ss_pred HHH-HHHHHHHhhhHhhcCcchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhccCCCCCCCch
Q 024166 11 LSA-VLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTSPNFS 89 (271)
Q Consensus 11 ~~~-l~~~~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~~~~~~~~~ 89 (271)
.+. +...+..+.++|+++++++...++.++.|++++++++++ +|||+++++|++++++++|++++..+++ +..
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~--l~E~~~~~~~~g~~l~~~Gv~li~~~~~----~~~ 151 (296)
T PRK15430 78 VSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIF--LGERFRRMQWLAVILAICGVLVQLWTFG----SLP 151 (296)
T ss_pred HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHH--hcCCCcHHHHHHHHHHHHHHHHHHHHcC----Ccc
Confidence 443 345678899999999999999999999999999999999 9999999999999999999998864322 111
Q ss_pred HHHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcccHHHHHHHhhhchH-HHHHHHHHH
Q 024166 90 MIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLY-VYGVLVFEA 168 (271)
Q Consensus 90 ~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~l~~ 168 (271)
.+.+.++++|+.+.+++|+..+ +..........+...++.+...+ ...... . .....+. .+..++..+
T Consensus 152 ----~~~l~aa~~~a~~~i~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~---~~~~~~~~~~~~~~~~g 220 (296)
T PRK15430 152 ----IIALGLAFSFAFYGLVRKKIAV-EAQTGMLIETMWLLPVAAIYLFA--IADSST-S---HMGQNPMSLNLLLIAAG 220 (296)
T ss_pred ----HHHHHHHHHHHHHHHHHHhcCC-CCchhHHHHHHHHHHHHHHHHHH--HccCCc-c---cccCCcHHHHHHHHHHH
Confidence 4577788999999988876432 11111122222333333222111 111110 0 0011222 234455555
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhccC
Q 024166 169 MATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPA 235 (271)
Q Consensus 169 ~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~k 235 (271)
+++.+++.++++++++.+|..++++.+++|+++++++++++||++++.+++|.++++.|+.+.....
T Consensus 221 ~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~~ 287 (296)
T PRK15430 221 IVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDA 287 (296)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 6778999999999999999999999999999999999999999999999999999988888776543
No 19
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.88 E-value=3.6e-20 Score=164.00 Aligned_cols=216 Identities=13% Similarity=0.079 Sum_probs=161.3
Q ss_pred hhhHHHHHHHHHHHHHhhhHhhcCcchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhccCCCC
Q 024166 5 WKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQT 84 (271)
Q Consensus 5 ~~~~~~~~~l~~~~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~~~~ 84 (271)
|+.....++++.....+.+++++|++.+.++++..+.|+++++++ +|+..+ ...+.++++|+.++...+.+
T Consensus 71 ~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~------~~~~~~--~~~~~i~~~Gv~li~~~~~~- 141 (293)
T PRK10532 71 RLPLLFYGVSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFS------SRRPVD--FVWVVLAVLGLWFLLPLGQD- 141 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHh------cCChHH--HHHHHHHHHHHheeeecCCC-
Confidence 345667777777778889999999999999999999999987654 244443 44567789999877633222
Q ss_pred CCCchHHHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcccHHHHHHHhhhchHHH-HH
Q 024166 85 SPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVY-GV 163 (271)
Q Consensus 85 ~~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 163 (271)
.++.+..|+++.+.++++++.+.++.|+..+++ ++... .+...++...+.|.....+. + ...++..| ..
T Consensus 142 ~~~~~~~G~ll~l~aa~~~a~~~v~~r~~~~~~---~~~~~-~~~~~~~~~~l~~~~~~~~~--~----~~~~~~~~~~~ 211 (293)
T PRK10532 142 VSHVDLTGAALALGAGACWAIYILSGQRAGAEH---GPATV-AIGSLIAALIFVPIGALQAG--E----ALWHWSILPLG 211 (293)
T ss_pred cccCChHHHHHHHHHHHHHHHHHHHHHHHhccC---CchHH-HHHHHHHHHHHHHHHHHccC--c----ccCCHHHHHHH
Confidence 123456899999999999999999998875543 23333 34445555444443333221 0 01122333 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhccCCCCc
Q 024166 164 LVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKP 239 (271)
Q Consensus 164 l~l~~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~k~~~~ 239 (271)
++++.+++++++.++++++++.+|.+++++..++|+++.+++++++||++++.+++|.++++.|+..+.+..++++
T Consensus 212 l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~~~ 287 (293)
T PRK10532 212 LAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRREP 287 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 5677788999999999999999999999999999999999999999999999999999999999999986654443
No 20
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.85 E-value=8.9e-20 Score=160.52 Aligned_cols=213 Identities=12% Similarity=0.075 Sum_probs=157.4
Q ss_pred HHHHHH-HHHHHHHhhhHhhcCcchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhccCCCCCC
Q 024166 8 YVKLSA-VLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTSP 86 (271)
Q Consensus 8 ~~~~~~-l~~~~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~~~~~~ 86 (271)
....+. .......+.+.|+++.+.+...++.++.|++++++++++ +|||+++++|++++++++|+.++...+..
T Consensus 65 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~--~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~--- 139 (281)
T TIGR03340 65 LLAISAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLT--LGETLSPLAWLGILIITLGLLVLGLSRFA--- 139 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHH--HcCCCCHHHHHHHHHHHHHHHHHhccccc---
Confidence 333344 346678899999999999999999999999999999999 99999999999999999999988754322
Q ss_pred CchHHHHHHHHHHHHHHHhhHhHHHHHHhhCCCC-ChhhHHHHHHHhh-HHHHHHHHhhcccHHHHHHHhhhchHHHHHH
Q 024166 87 NFSMIGVIMISGALIMDSFLGNLQEAIFTMNPET-TQMEMLFCSTVVG-LPMLIPPMLLTGELFKAWNSCSQHLYVYGVL 164 (271)
Q Consensus 87 ~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 164 (271)
+.+..|+.+.+.++++++.+.++.|+..++.+.. +......+..... .++..+. ...++. .. .......+..+
T Consensus 140 ~~~~~g~~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~--~~~~~~~~~~~ 214 (281)
T TIGR03340 140 QHRRKAYAWALAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLY-LKRHGR--SM--FPYARQILPSA 214 (281)
T ss_pred ccchhHHHHHHHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHH-HHHhcc--ch--hhhHHHHHHHH
Confidence 2345788899999999999998776543222111 1111112222211 2221111 111110 00 00112334556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHH
Q 024166 165 VFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITL 230 (271)
Q Consensus 165 ~l~~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l 230 (271)
+...+++.+++.+|++++++.++..++....+.|+++.+++++++||+++..+++|.++++.|+.+
T Consensus 215 ~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 215 TLGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 777788899999999999999999999999999999999999999999999999999999999875
No 21
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.84 E-value=4.1e-19 Score=152.73 Aligned_cols=212 Identities=17% Similarity=0.259 Sum_probs=166.6
Q ss_pred hhHHHHHHHHHHHHHhhhHhhcCcchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhccCCCCC
Q 024166 6 KTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTS 85 (271)
Q Consensus 6 ~~~~~~~~l~~~~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~~~~~ 85 (271)
.++++.+++|.+.+.+.+.++++++.+++++++.++.++|+++++++ +|||.+++||+++++.++|+.++..++....
T Consensus 18 ~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~--L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~~ 95 (244)
T PF04142_consen 18 LKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLL--LKRRLSRRQWLALFLLVAGVVLVQLSSSQSS 95 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHH--HHcccchhhHHHHHHHHHHHheeecCCcccc
Confidence 36788899999999999999999999999999999999999999999 9999999999999999999999887654320
Q ss_pred -------------CCchHHHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcc-cHHHHH
Q 024166 86 -------------PNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTG-ELFKAW 151 (271)
Q Consensus 86 -------------~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 151 (271)
..+...|+++++.++++.|+.+++.||++|+.+ .+.+........+++++.++.....+ +.....
T Consensus 96 ~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~-~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~ 174 (244)
T PF04142_consen 96 DNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSN-VSLWIQNMQLYLFGILFNLLALLLSDGSAISES 174 (244)
T ss_pred ccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHhcccccccccC
Confidence 123589999999999999999999999999864 33444444555566665544433221 110001
Q ss_pred HHhhh-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHH
Q 024166 152 NSCSQ-HLYVYGVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLI 224 (271)
Q Consensus 152 ~~~~~-~~~~~~~l~l~~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lv 224 (271)
.+++. ++..|. ..+..+++.+.....+|+.+...-+....+..+++.++++++||.++|....+|..+|
T Consensus 175 g~f~G~~~~~~~----~i~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~V 244 (244)
T PF04142_consen 175 GFFHGYSWWVWI----VIFLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAALV 244 (244)
T ss_pred CchhhcchHHHH----HHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheecC
Confidence 11111 222222 2355677888888999999999999999999999999999999999999999998754
No 22
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=99.82 E-value=3.2e-18 Score=150.16 Aligned_cols=223 Identities=18% Similarity=0.188 Sum_probs=174.4
Q ss_pred hhHHHHHHHHHHHHHhhhHhhcCcchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhccCCCC-
Q 024166 6 KTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQT- 84 (271)
Q Consensus 6 ~~~~~~~~l~~~~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~~~~- 84 (271)
.+..+.+++|.+.+-+.+.++.|++.+++++....+.+.|++++.++ +|||.+++||.++++.++|+.+...+..+.
T Consensus 93 lk~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~--L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~ 170 (345)
T KOG2234|consen 93 LKVSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLI--LRRKLSRLQWMALVLLFAGVALVQLPSLSPT 170 (345)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHH--HhhhhhHHHHHHHHHHHHHHHHHhccCCCCC
Confidence 46777888999988899999999999999999999999999999999 999999999999999999999998432211
Q ss_pred ------CCCchHHHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcccHHHH--HHHhhh
Q 024166 85 ------SPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKA--WNSCSQ 156 (271)
Q Consensus 85 ------~~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 156 (271)
...+.+.|....+.+++.+|+.+++.||++|+.+ .+.+-.......++.++.+...+.. |.... ..+++.
T Consensus 171 ~a~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~-~s~wi~NiqL~~~g~~f~~l~~~~~-d~~~i~~~gff~G 248 (345)
T KOG2234|consen 171 GAKSESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSN-VSLWIRNIQLYFFGILFNLLTILLQ-DGEAINEYGFFYG 248 (345)
T ss_pred CccCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHHHHHHHhhc-cccccccCCcccc
Confidence 1246799999999999999999999999998754 3333333344455555555443333 21111 112233
Q ss_pred chH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhccC
Q 024166 157 HLY-VYGVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPA 235 (271)
Q Consensus 157 ~~~-~~~~l~l~~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~k 235 (271)
+.. .|..+ +..+++.++....+|+.+...-.....+..+++.+.|+.+||.++|....+|..+|+.++.+|...+
T Consensus 249 ~s~~vw~vV----l~~a~gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P 324 (345)
T KOG2234|consen 249 YSSIVWLVV----LLNAVGGLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYP 324 (345)
T ss_pred ccHHHHHHH----HHHhccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCC
Confidence 332 34333 3345667778888999999999999999999999999999999999999999999999999999443
Q ss_pred C
Q 024166 236 D 236 (271)
Q Consensus 236 ~ 236 (271)
+
T Consensus 325 ~ 325 (345)
T KOG2234|consen 325 A 325 (345)
T ss_pred c
Confidence 3
No 23
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.81 E-value=1.3e-17 Score=146.03 Aligned_cols=214 Identities=15% Similarity=0.194 Sum_probs=161.7
Q ss_pred hHHHHHHHH-HHHHHhhhHhhcCcchhHHHHHhhcchHHHHHHHH-hhcccccccChhhHHHHHHHHHHHHHHhccCCCC
Q 024166 7 TYVKLSAVL-MGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGA-FIPGLRRKYPAHEYVSALLLVVGLILFTLADAQT 84 (271)
Q Consensus 7 ~~~~~~~l~-~~~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~-ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~~~~ 84 (271)
.....+.+. .....+.+.+++|++.+..+++.++.|+++.++++ ++ +|||++++++.++.+.++|+.++...+...
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~ 148 (292)
T COG0697 71 LLLLLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLL--LGERLSLLQILGILLALAGVLLILLGGGGG 148 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHH--ccCCCcHHHHHHHHHHHHhHHheecCCCcc
Confidence 344444444 55678899999999999999999999999999997 66 799999999999999999999998766532
Q ss_pred CCCchHHHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHH-HHHHhhHHHHHHHHhhcccHHHHHHHhhhchHHH-H
Q 024166 85 SPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLF-CSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVY-G 162 (271)
Q Consensus 85 ~~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 162 (271)
... ...|+.+.+.++++++++.+++|+.. +. ++..... +... ............ +. + .......| .
T Consensus 149 ~~~-~~~g~~~~l~a~~~~a~~~~~~~~~~-~~---~~~~~~~~~~~~-~~~~~~~~~~~~-~~-~----~~~~~~~~~~ 216 (292)
T COG0697 149 GIL-SLLGLLLALAAALLWALYTALVKRLS-RL---GPVTLALLLQLL-LALLLLLLFFLS-GF-G----APILSRAWLL 216 (292)
T ss_pred hhH-HHHHHHHHHHHHHHHHHHHHHHHHhc-CC---ChHHHHHHHHHH-HHHHHHHHHHhc-cc-c----ccCCHHHHHH
Confidence 211 47999999999999999999998776 32 2333333 2222 111111100111 00 0 01122223 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhcc
Q 024166 163 VLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLP 234 (271)
Q Consensus 163 ~l~l~~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~ 234 (271)
....+.+++.+++.++++.+++.++...++...++|+.+++++++++||+++..+++|..+++.|+.+....
T Consensus 217 ~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 217 LLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 444555666689999999999999999999999999999999999999999999999999999999988866
No 24
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.80 E-value=4.1e-19 Score=155.82 Aligned_cols=224 Identities=12% Similarity=0.203 Sum_probs=180.9
Q ss_pred HHHHHHHHHHHHhhhHhhcCcchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhccCCCC----
Q 024166 9 VKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQT---- 84 (271)
Q Consensus 9 ~~~~~l~~~~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~~~~---- 84 (271)
+.++.+.+.++...|.||+|++++..+++.|++-+||+.++.++ ..||++..|.+++++.+.|+++++.+|...
T Consensus 163 l~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if--~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~ 240 (416)
T KOG2765|consen 163 LFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIF--PVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDL 240 (416)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHc--CcchhhHHHHHHHHHhhccEEEEEeccccccccC
Confidence 34455668899999999999999999999999999999999999 689999999999999999999999886532
Q ss_pred CCCchHHHHHHHHHHHHHHHhhHhHHHHHHhhCC-CCChhhHHH-HHHHhhHHHHHHHHhhcccH-HHHHHHhhhchHHH
Q 024166 85 SPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNP-ETTQMEMLF-CSTVVGLPMLIPPMLLTGEL-FKAWNSCSQHLYVY 161 (271)
Q Consensus 85 ~~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 161 (271)
.+.....|.+++++++..||.|.++.||-..+++ +.+ +++.| |..++.++++.|.+++..-+ .+.+. .....+..
T Consensus 241 ~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvd-i~lffGfvGLfnllllwP~l~iL~~~~~e~F~-lP~~~q~~ 318 (416)
T KOG2765|consen 241 PASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVD-IQLFFGFVGLFNLLLLWPPLIILDFFGEERFE-LPSSTQFS 318 (416)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHhhccccccccc-HHHHHHHHHHHHHHHHhHHHHHHHHhccCccc-CCCCceeE
Confidence 2345699999999999999999999887666553 333 45544 78888888887764432111 01111 01122233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhccCC
Q 024166 162 GVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPAD 236 (271)
Q Consensus 162 ~~l~l~~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~k~ 236 (271)
..++.+++.+++.-.+|.+++-.++|+.+.+...+...++++...++-|.++|+.+.+|.+.|+.|.+..++..+
T Consensus 319 ~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~ 393 (416)
T KOG2765|consen 319 LVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSE 393 (416)
T ss_pred eeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecccc
Confidence 345667788899999999999999999999999999999999999999999999999999999999988876543
No 25
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.76 E-value=2.9e-18 Score=140.80 Aligned_cols=234 Identities=15% Similarity=0.169 Sum_probs=187.5
Q ss_pred chhhHHHHHHHHHHHHHhhhHhhcCcchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhccCCC
Q 024166 4 PWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQ 83 (271)
Q Consensus 4 ~~~~~~~~~~l~~~~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~~~ 83 (271)
..|.+++++++-...+..+.-+|||+++|.|+++|..+.+.++....++ ||.|.+.....+-.++++-..+..++|.+
T Consensus 67 ~aK~WfpiSfLLv~MIyt~SKsLqyL~vpiYTiFKNltII~iAygEvl~--Fgg~vtsl~l~SFilMvlSS~va~w~D~q 144 (309)
T COG5070 67 KAKKWFPISFLLVVMIYTSSKSLQYLAVPIYTIFKNLTIILIAYGEVLF--FGGRVTSLELLSFILMVLSSVVATWGDQQ 144 (309)
T ss_pred hhhhhcCHHHHHHHHHHhcccceeeeeeeHHHHhccceeehhHhhHHHH--hcCccchhhHHHHHHHHHHHHHhccchhh
Confidence 3578999999999999999999999999999999999999999999999 99999999999999999999999998874
Q ss_pred CC---CCchHHHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcccHHHHHHHhh-hchH
Q 024166 84 TS---PNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCS-QHLY 159 (271)
Q Consensus 84 ~~---~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 159 (271)
.. ...--.|++|+...++..+.+-...++..+-. +-..++.+||.|+.+.|+++...++.+|..+ -+... .++.
T Consensus 145 ~~~~~~~~lN~GY~Wm~~NclssaafVL~mrkri~lt-Nf~d~dtmfYnNllslPiL~~~s~~~edws~-~n~annl~~d 222 (309)
T COG5070 145 ASAFKAQILNPGYLWMFTNCLSSAAFVLIMRKRIKLT-NFKDFDTMFYNNLLSLPILLSFSFLFEDWSP-GNLANNLSVD 222 (309)
T ss_pred HHHHHhcccCCceEEEehhhHhHHHHHHHHHHhhccc-ccchhhHHHHhhhHHHHHHHHHHHHhccCCc-chhhcCCChH
Confidence 32 11224699999998888777655444433321 1124788999999999988766555554211 11111 1334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhccCCCCc
Q 024166 160 VYGVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKP 239 (271)
Q Consensus 160 ~~~~l~l~~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~k~~~~ 239 (271)
....+++.++|++.-..+..++++.++.++.++++.+.+....+.|.++||++.+......+.+-..+-.+|...|.+++
T Consensus 223 ~l~am~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavaks~k~ 302 (309)
T COG5070 223 SLMAMFISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKSKKQ 302 (309)
T ss_pred HHHHHHHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567788888766678889999999999999999999999999999999999999999999998887788888776655
Q ss_pred cc
Q 024166 240 IK 241 (271)
Q Consensus 240 ~~ 241 (271)
++
T Consensus 303 q~ 304 (309)
T COG5070 303 QN 304 (309)
T ss_pred hc
Confidence 44
No 26
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.72 E-value=4.1e-16 Score=124.68 Aligned_cols=142 Identities=17% Similarity=0.313 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHHHhhHhHHHHHHhhC----CCCChhhHHHHHHHhhHHHHHHHHhhcccHH--HHHHHhhh-----chHH
Q 024166 92 GVIMISGALIMDSFLGNLQEAIFTMN----PETTQMEMLFCSTVVGLPMLIPPMLLTGELF--KAWNSCSQ-----HLYV 160 (271)
Q Consensus 92 G~~l~l~s~~~~a~~~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-----~~~~ 160 (271)
|+++++.|.++.+++++++|+.+++. ++.++.++++|.+..++++++|..++.++.. +....... .+..
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 78899999999999999999999884 4567899999999999888887765544322 11111111 2345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhc
Q 024166 161 YGVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLL 233 (271)
Q Consensus 161 ~~~l~l~~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~ 233 (271)
+..+...++..++.+...+.+++++||++.++.+.+|.+.++++|+++|||++|+.+++|+++.+.|+++|++
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence 5667777788888889999999999999999999999999999999999999999999999999999999975
No 27
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.71 E-value=9.5e-16 Score=133.04 Aligned_cols=182 Identities=9% Similarity=0.044 Sum_probs=130.6
Q ss_pred HHHHHHHHHHHHHhhhHhhcCcchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhccCCCCCCC
Q 024166 8 YVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTSPN 87 (271)
Q Consensus 8 ~~~~~~l~~~~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~~~~~~~ 87 (271)
....+++..++..+.++|++|++++.++++.++.|++++++++++ +|||++++++++++++++|++++..++. +
T Consensus 73 ~~~~g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~--l~Ek~~~~~~l~~~~~~~Gv~li~~~~~----~ 146 (256)
T TIGR00688 73 LLLCGLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVF--LKERISRFQFIAVIIATLGVISNIVLKG----S 146 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHH--HhcCCCHHHHHHHHHHHHHHHHHHHHcC----C
Confidence 344455667788899999999999999999999999999999999 9999999999999999999998764321 1
Q ss_pred chHHHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcccHHHHHHHhhhch-HHHHHHHH
Q 024166 88 FSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHL-YVYGVLVF 166 (271)
Q Consensus 88 ~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~l 166 (271)
.. .+.+.++++++.+.+..|+..++ +..+...+ .....+...+.....+. .+ . ...++ ..|..++.
T Consensus 147 ~~----~~~l~aa~~~a~~~i~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~-~~-~--~~~~~~~~~~~l~~ 213 (256)
T TIGR00688 147 LP----WEALVLAFSFTAYGLIRKALKNT----DLAGFCLE-TLSLMPVAIYYLLQTDF-AT-V--QQTNPFPIWLLLVL 213 (256)
T ss_pred ch----HHHHHHHHHHHHHHHHHhhcCCC----CcchHHHH-HHHHHHHHHHHHHHhcc-Cc-c--cccCchhHHHHHHH
Confidence 11 35677899999999988774332 12222221 22222332221111111 00 0 01122 24555555
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 024166 167 EAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLI 208 (271)
Q Consensus 167 ~~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~ 208 (271)
.++++.+++.++++++++.+|..+++..+++|+++.+++.+.
T Consensus 214 ~g~~t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 214 AGLITGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 556688999999999999999999999999999999999764
No 28
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=99.70 E-value=5.6e-16 Score=131.36 Aligned_cols=224 Identities=16% Similarity=0.175 Sum_probs=175.0
Q ss_pred HHHHHHHHHHHHHhhhHhhcCcchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhccCCC----
Q 024166 8 YVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQ---- 83 (271)
Q Consensus 8 ~~~~~~l~~~~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~~~---- 83 (271)
.++.++|...+..+.|.+|.+++.+.++++|-...+||.+++..+ ++++++.+||++++...+|++++...|.-
T Consensus 89 fl~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~--Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~ 166 (372)
T KOG3912|consen 89 FLPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMF--LNRTITGRQWLGILFVSLGLVIVGSLDVHLVTD 166 (372)
T ss_pred ecChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHH--HhcccchhhHHHHHHHHhhhheeeeeecccccC
Confidence 456789999999999999999999999999999999999999999 99999999999999999999988765421
Q ss_pred --CCCCchHHHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHH----Hhh-cc-----------
Q 024166 84 --TSPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPP----MLL-TG----------- 145 (271)
Q Consensus 84 --~~~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~----------- 145 (271)
.+-++.+.|+++.+++-+.-|+++++.||.+++++ .+|.+.+.|..+++..++... .++ .+
T Consensus 167 p~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~n-V~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~ 245 (372)
T KOG3912|consen 167 PYTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSN-VAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVL 245 (372)
T ss_pred CccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhcc-CCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcch
Confidence 12246799999999999999999999999998863 567888878777775543221 111 11
Q ss_pred -cHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHH
Q 024166 146 -ELFKAWNSCSQHLYVYGVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLI 224 (271)
Q Consensus 146 -~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lv 224 (271)
|..+.+......|.....+....++-++.++.-....|..||++-.++-.+|..+..+++.....|.+...|+.|..+.
T Consensus 246 eD~~~~~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliL 325 (372)
T KOG3912|consen 246 EDWGDAFAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLIL 325 (372)
T ss_pred hhHHHHHHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHH
Confidence 1122222223344432222222233233345556788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcc
Q 024166 225 AMGITLKLLP 234 (271)
Q Consensus 225 l~Gv~l~~~~ 234 (271)
+.|+.+|+-.
T Consensus 326 i~Gi~lY~~i 335 (372)
T KOG3912|consen 326 IMGIILYNQI 335 (372)
T ss_pred HHHHHHHHHH
Confidence 9999999743
No 29
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=99.68 E-value=7.8e-16 Score=130.89 Aligned_cols=192 Identities=18% Similarity=0.268 Sum_probs=141.2
Q ss_pred cchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhccCCC-----------------------CC
Q 024166 29 LNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQ-----------------------TS 85 (271)
Q Consensus 29 ~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~~~-----------------------~~ 85 (271)
+++|.++..++.+++++++.++.+ .++|.+..|+++.++...|+......|.+ ..
T Consensus 2 isvPa~~~~~s~~l~~v~l~~~~~--~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~ 79 (222)
T TIGR00803 2 LSVPIHIIFKQNNLVLIALGNLLA--AGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLM 79 (222)
T ss_pred ccccchHHHHhcchHHHHHhcccc--cceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccccc
Confidence 578999999999999999999999 89999999999999999998864433221 01
Q ss_pred CCchHHHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHH-----Hhhc-ccHHHHHHHhhhchH
Q 024166 86 PNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPP-----MLLT-GELFKAWNSCSQHLY 159 (271)
Q Consensus 86 ~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~ 159 (271)
.++.+.|..+.+.++.++++..+++|+.+++++ . ++|.+.+.+++..+. .... ++......+.+.+|.
T Consensus 80 ~g~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~-~-----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (222)
T TIGR00803 80 FGNPVVGLSAVLSALLSSGFAGVYFEKILKDGD-T-----MFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPT 153 (222)
T ss_pred cccHHHHHHHHHHHHHHHhhhHHHHHHcccCCC-C-----chHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCch
Confidence 135688988899999999999999999765432 1 244433333332221 1111 111111111223343
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHH
Q 024166 160 VYGVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLK 231 (271)
Q Consensus 160 ~~~~l~l~~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~ 231 (271)
.... ..+.+++++.+..+++|+.|+.+.++...++++++.++|+++|||++|..+++|..+++.|+++|
T Consensus 154 ~~~~---~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY 222 (222)
T TIGR00803 154 AVWI---VGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY 222 (222)
T ss_pred HHHH---HHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence 2222 22445778888999999999999999999999999999999999999999999999999998765
No 30
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.66 E-value=1.2e-14 Score=128.51 Aligned_cols=203 Identities=12% Similarity=0.148 Sum_probs=153.8
Q ss_pred HHHHHHhhhHhhcCcchhHHHHHhh-cchHHHHHHHHhhcccccccChhh----HHHHHHHHHHHHHHhccCCCCCC---
Q 024166 15 LMGSHGLTKGSLAFLNYPAQLMFKS-TKVLPVMVMGAFIPGLRRKYPAHE----YVSALLLVVGLILFTLADAQTSP--- 86 (271)
Q Consensus 15 ~~~~~~l~~~al~~~~~~~~~i~~s-~~pi~v~~~~~ll~~l~e~~~~~~----~l~~~l~~~Gv~v~~~~~~~~~~--- 86 (271)
+..++.+.+.+.++++++.+..+.+ ..++++.+.+.++ +|||.++++ +++++++++|+.+....+.+...
T Consensus 69 w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~--f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~~~ 146 (290)
T TIGR00776 69 WALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIV--FGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGIKS 146 (290)
T ss_pred HHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHH--hhhccchHHHHHHHHHHHHHHHhHheEEecccccccccc
Confidence 5667899999999999999987777 7888999999999 999999999 99999999999988765433211
Q ss_pred -CchHHHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHH---HHHHh-hHHHHHHHHhhcccHHHHHHHhhhchHHH
Q 024166 87 -NFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLF---CSTVV-GLPMLIPPMLLTGELFKAWNSCSQHLYVY 161 (271)
Q Consensus 87 -~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (271)
.+...|+++.++|.++|+.+....|+. +. ++....+ +.... +..+..+. ....+ ......|
T Consensus 147 ~~~~~~Gi~~~l~sg~~y~~~~~~~~~~--~~---~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~--------~~~~~~~ 212 (290)
T TIGR00776 147 EFNFKKGILLLLMSTIGYLVYVVVAKAF--GV---DGLSVLLPQAIGMVIGGIIFNLGH-ILAKP--------LKKYAIL 212 (290)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHc--CC---CcceehhHHHHHHHHHHHHHHHHH-hcccc--------hHHHHHH
Confidence 223789999999999999999888753 22 3444422 22222 22222221 00011 0111234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhh----hHHHHHHHHHHHHhcc
Q 024166 162 GVLVFEAMATFIGQVSVLSLIA-LFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHG----TGLLLIAMGITLKLLP 234 (271)
Q Consensus 162 ~~l~l~~~~~~~~~~~~~~~i~-~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~----~G~~lvl~Gv~l~~~~ 234 (271)
..+. .++...+++.+++...+ +.++.++++++.++|+.+++++++++||+.++.++ +|.++++.|+.+....
T Consensus 213 ~~~~-~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~~ 289 (290)
T TIGR00776 213 LNIL-PGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGIG 289 (290)
T ss_pred HHHH-HHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhcc
Confidence 3444 44446899999999999 99999999999999999999999999999999999 9999999999887654
No 31
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=99.60 E-value=1.8e-17 Score=138.69 Aligned_cols=250 Identities=14% Similarity=0.169 Sum_probs=184.1
Q ss_pred CchhhHHHHHHHHHHHHHhhhHhhcCcchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhccCC
Q 024166 3 NPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADA 82 (271)
Q Consensus 3 ~~~~~~~~~~~l~~~~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~~ 82 (271)
..||+|.++++...-++.+--.|.||++......+.+....-+++++|++ +|-|.++.|+.|++++++|+++++..|.
T Consensus 76 ~~~~hYilla~~DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~f--LktrYrlmki~gV~iCi~GvvmvV~sDV 153 (336)
T KOG2766|consen 76 AKWRHYILLAFVDVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFF--LKTRYRLMKISGVVICIVGVVMVVFSDV 153 (336)
T ss_pred HHHHHhhheeEEeecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHH--HHHHHhhheeeeEEeEecceEEEEEeee
Confidence 45888888888888888888899999999999999998888899999999 9999999999999999999998887663
Q ss_pred CC----CCCchHHHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcccHHHHHHHhhhch
Q 024166 83 QT----SPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHL 158 (271)
Q Consensus 83 ~~----~~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (271)
-. .+.+...|+++.+.++-+||..++.+|.+.++- +..+++....++++.+..+=.+.+. .+ ....+++.
T Consensus 154 ~agd~aggsnp~~GD~lvi~GATlYaVSNv~EEflvkn~---d~~elm~~lgLfGaIIsaIQ~i~~~--~~-~~tl~w~~ 227 (336)
T KOG2766|consen 154 HAGDRAGGSNPVKGDFLVIAGATLYAVSNVSEEFLVKNA---DRVELMGFLGLFGAIISAIQFIFER--HH-VSTLHWDS 227 (336)
T ss_pred ccccccCCCCCccCcEEEEecceeeeeccccHHHHHhcC---cHHHHHHHHHHHHHHHHHHHHhhhc--cc-eeeEeehH
Confidence 21 234678999999999999999999999887764 4567887778877766543211111 00 11111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhccCCCC
Q 024166 159 YVYGVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDK 238 (271)
Q Consensus 159 ~~~~~l~l~~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~k~~~ 238 (271)
....++. ...+-++-+.+.-..+|..||+..++.....+..+++. ..||-+++|...+..+.+..|.++|..+.+.+
T Consensus 228 ~i~~yl~-f~L~MFllYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~re~~~ 304 (336)
T KOG2766|consen 228 AIFLYLR-FALTMFLLYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYSTREKDE 304 (336)
T ss_pred HHHHHHH-HHHHHHHHHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeeccccCc
Confidence 1112222 44555677777788999999999999999999999988 78888899999999999999999995444333
Q ss_pred cccc-cccCCCccceeccccccchhh
Q 024166 239 PIKR-TATSSFKVNIRKLSFSEREEA 263 (271)
Q Consensus 239 ~~~~-~~~~~~~~~~~~~~~~~~~~~ 263 (271)
.+.+ +|..+--.+.+|..+||||++
T Consensus 305 ~e~r~~~v~~~~~~~~~L~~eed~~~ 330 (336)
T KOG2766|consen 305 EELRKGQVVSEVRRPRKLLDEEDEQS 330 (336)
T ss_pred HhhccCccccccccCccccCcccccc
Confidence 3322 211121123356666555544
No 32
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.57 E-value=5.6e-13 Score=114.35 Aligned_cols=206 Identities=13% Similarity=0.145 Sum_probs=152.1
Q ss_pred HHHhhhHhhcCcchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhccCCCCCCCchHHHHHHHH
Q 024166 18 SHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTSPNFSMIGVIMIS 97 (271)
Q Consensus 18 ~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~~~~~~~~~~~G~~l~l 97 (271)
+.+..-+|..+=.+-.+......+|++.++++.++ +|||+++.||+++.++.+||..-.+... +..+....+++
T Consensus 85 nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lf--lkErls~~Q~iAV~lA~~GV~~~~~~~g----~lpwval~la~ 158 (293)
T COG2962 85 NWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLF--LKERLSRLQWIAVGLAAAGVLIQTWLLG----SLPWVALALAL 158 (293)
T ss_pred HHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHH--HHhhccHHHHHHHHHHHHHHHHHHHHcC----CCcHHHHHHHH
Confidence 34455666666555556677778999999999999 9999999999999999999999887653 34566666665
Q ss_pred HHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcccHHHHHHHhh-hchHHHHHHHHHHHHHHHHHH
Q 024166 98 GALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCS-QHLYVYGVLVFEAMATFIGQV 176 (271)
Q Consensus 98 ~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~l~~~~~~~~~~ 176 (271)
.+++|....|++ + .+..+=.+.-.++-+|..+.+++..++-.+ +.. .++..+..+...+..|++...
T Consensus 159 ----sf~~Ygl~RK~~-~----v~a~~g~~lE~l~l~p~al~yl~~l~~~~~---~~~~~~~~~~~LLv~aG~vTavpL~ 226 (293)
T COG2962 159 ----SFGLYGLLRKKL-K----VDALTGLTLETLLLLPVALIYLLFLADSGQ---FLQQNANSLWLLLVLAGLVTAVPLL 226 (293)
T ss_pred ----HHHHHHHHHHhc-C----CchHHhHHHHHHHHhHHHHHHHHHHhcCch---hhhcCCchHHHHHHHhhHHHHHHHH
Confidence 688887654331 1 222332333333333443333333222111 122 344566677778888899999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhccCCCCccc
Q 024166 177 SVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKPIK 241 (271)
Q Consensus 177 ~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~k~~~~~~ 241 (271)
++..+-|+.+=.+.++..+++|....+++++++||+++..+++..+++-.|+.+|.+..-++++|
T Consensus 227 lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~l~~~r~ 291 (293)
T COG2962 227 LFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDGLYTARK 291 (293)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999998876554444
No 33
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.50 E-value=3.8e-15 Score=125.60 Aligned_cols=218 Identities=12% Similarity=0.114 Sum_probs=159.9
Q ss_pred HHHHHHHHHHHHhhhHhhcCcchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhccCC-----C
Q 024166 9 VKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADA-----Q 83 (271)
Q Consensus 9 ~~~~~l~~~~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~~-----~ 83 (271)
..-++..+.+..+.++|++|.+.+-++++..++|++|++++|.+ +|||++..+.++....+.|++++...+. .
T Consensus 101 iLRg~mG~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~--LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t 178 (346)
T KOG4510|consen 101 ILRGFMGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAF--LKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTT 178 (346)
T ss_pred EeehhhhhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHH--HcCCCcHHHHHHHHHhhheEEEEecCCcccCCCc
Confidence 34466777888999999999999999999999999999999999 9999999999999999999998865331 1
Q ss_pred C----CC-CchHHHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcccHHHHHHHhhhch
Q 024166 84 T----SP-NFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHL 158 (271)
Q Consensus 84 ~----~~-~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (271)
. .. +.+..|....+.+++.-+-..++-+++ .|. .+..-.+-|..+++++..++.+..-|+. ...+ ..
T Consensus 179 ~g~~~s~~~~~~~gt~aai~s~lf~asvyIilR~i-Gk~--~h~~msvsyf~~i~lV~s~I~~~~ig~~----~lP~-cg 250 (346)
T KOG4510|consen 179 EGEDSSQVEYDIPGTVAAISSVLFGASVYIILRYI-GKN--AHAIMSVSYFSLITLVVSLIGCASIGAV----QLPH-CG 250 (346)
T ss_pred cccccccccccCCchHHHHHhHhhhhhHHHHHHHh-hcc--ccEEEEehHHHHHHHHHHHHHHhhccce----ecCc-cc
Confidence 0 11 345778888887777665555555443 222 2222223344444544443332222321 1101 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhccCC
Q 024166 159 YVYGVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPAD 236 (271)
Q Consensus 159 ~~~~~l~l~~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~k~ 236 (271)
..|..+...++.++++|++..+++++=-|...++..+..-+++.++-+++|||.+|++.|+|+++++.+..+....|-
T Consensus 251 kdr~l~~~lGvfgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~kw 328 (346)
T KOG4510|consen 251 KDRWLFVNLGVFGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALKKW 328 (346)
T ss_pred cceEEEEEehhhhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHHHH
Confidence 123334444577899999999999999999999999999999999999999999999999999999999888775543
No 34
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.42 E-value=8.9e-11 Score=98.71 Aligned_cols=215 Identities=13% Similarity=0.049 Sum_probs=160.2
Q ss_pred chhhHHHHHHHHHHHHHhhhHhhcCcchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhccCCC
Q 024166 4 PWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQ 83 (271)
Q Consensus 4 ~~~~~~~~~~l~~~~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~~~ 83 (271)
.|+..+..|.+-...+.+.|.+++.+|.+.+..+-.+-|+.++++ - .| +.++.+.+.+.+.|+.+......+
T Consensus 70 ~~~~~~~yGvsLg~MNl~FY~si~riPlGiAVAiEF~GPL~vA~~---~---sR--r~~d~vwvaLAvlGi~lL~p~~~~ 141 (292)
T COG5006 70 QRLALLAYGVSLGGMNLLFYLSIERIPLGIAVAIEFTGPLAVALL---S---SR--RLRDFVWVALAVLGIWLLLPLGQS 141 (292)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccHHHHHHH---h---cc--chhhHHHHHHHHHHHHhheeccCC
Confidence 456777888888889999999999999999999999999865543 2 12 234556677888898877543322
Q ss_pred CCCCchHHHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcccHHHHHHHhhhchHHH-H
Q 024166 84 TSPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVY-G 162 (271)
Q Consensus 84 ~~~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 162 (271)
....+..|..+++.+..||+.|-+.-+|.-+. .+.-+-+.....++.++.+|.-..... .. ..+|... .
T Consensus 142 -~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~---~~g~~g~a~gm~vAaviv~Pig~~~ag----~~--l~~p~ll~l 211 (292)
T COG5006 142 -VWSLDPVGVALALGAGACWALYIVLGQRAGRA---EHGTAGVAVGMLVAALIVLPIGAAQAG----PA--LFSPSLLPL 211 (292)
T ss_pred -cCcCCHHHHHHHHHHhHHHHHHHHHcchhccc---CCCchHHHHHHHHHHHHHhhhhhhhcc----hh--hcChHHHHH
Confidence 22457899999999999999998887775432 122333445555555555554332211 11 1355543 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhccCC
Q 024166 163 VLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPAD 236 (271)
Q Consensus 163 ~l~l~~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~k~ 236 (271)
-+.++.+++++.|.+--..+++.++-+.++...++|.++.+.+++++||.+|+.||+|++.|+.+..-..+.-+
T Consensus 212 aLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~~ 285 (292)
T COG5006 212 ALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLTAR 285 (292)
T ss_pred HHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccccccC
Confidence 45666788899999999999999999999999999999999999999999999999999999999875555433
No 35
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.16 E-value=3.7e-10 Score=86.29 Aligned_cols=123 Identities=11% Similarity=0.162 Sum_probs=93.1
Q ss_pred HHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcccHHHHHHHhhhchH-HHHHHHHHHHHHHHHHHHHHH
Q 024166 102 MDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLY-VYGVLVFEAMATFIGQVSVLS 180 (271)
Q Consensus 102 ~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~l~~~~~~~~~~~~~~ 180 (271)
++|.+.++.|+..++ .++....++....+.+ .++......... ....++. ....+..+.+++.+++.++++
T Consensus 2 ~~a~~~~~~k~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (126)
T PF00892_consen 2 SWAIYSVFSKKLLKK---ISPLSITFWRFLIAGI-LLILLLILGRKP----FKNLSPRQWLWLLFLGLLGTALAYLLYFY 73 (126)
T ss_pred eeeeHHHHHHHHhcc---CCHHHHHHHHHHHHHH-HHHHHHhhcccc----ccCCChhhhhhhhHhhccceehHHHHHHH
Confidence 578888888887766 3567788887777765 333322222211 1112222 234455555667899999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHh
Q 024166 181 LIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKL 232 (271)
Q Consensus 181 ~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~ 232 (271)
++++.++..++++..+.|+++.++++++++|++++.+++|+++++.|+.+..
T Consensus 74 a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 74 ALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred HHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998754
No 36
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.04 E-value=7.4e-10 Score=83.85 Aligned_cols=134 Identities=16% Similarity=0.109 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcccHHHHHHHhhhchHHHHHHHHHHHHHH
Q 024166 93 VIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAMATF 172 (271)
Q Consensus 93 ~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~ 172 (271)
.++++.|+.++++..++.|.-.+.. +|..-.+-.++....++....+..|...... ..++..|.++.++++.+.
T Consensus 5 ~~~ALLsA~fa~L~~iF~KIGl~~v---dp~~At~IRtiVi~~~l~~v~~~~g~~~~~~---~~~~k~~lflilSGla~g 78 (140)
T COG2510 5 IIYALLSALFAGLTPIFAKIGLEGV---DPDFATTIRTIVILIFLLIVLLVTGNWQAGG---EIGPKSWLFLILSGLAGG 78 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccc---CccHHHHHHHHHHHHHHHHHHHhcCceeccc---ccCcceehhhhHHHHHHH
Confidence 5678899999999988876554432 2222233344444444444445566532111 124556778888999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHh
Q 024166 173 IGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKL 232 (271)
Q Consensus 173 ~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~ 232 (271)
++-.+||+.++.=.+..+..+.-..+++++++|++++||++|..+|+|..++..|..+..
T Consensus 79 lswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 79 LSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 999999999999999999999999999999999999999999999999999999987654
No 37
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.98 E-value=5.9e-08 Score=86.08 Aligned_cols=140 Identities=10% Similarity=0.032 Sum_probs=106.7
Q ss_pred chHHHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcccHHHHHHHhhhchHHHHHHHHH
Q 024166 88 FSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFE 167 (271)
Q Consensus 88 ~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~ 167 (271)
+...|.++.+.+++++|...+..|. .. +.++.++.++...++.+++++.....++..+... ..+++..+......
T Consensus 5 ~~~~g~~~~l~a~~~wg~~~~~~k~-~~---~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 79 (296)
T PRK15430 5 QTRQGVLLALAAYFIWGIAPAYFKL-IY---YVPADEILTHRVIWSFFFMVVLMSICRQWSYLKT-LIQTPQKIFMLAVS 79 (296)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH-hc---CCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHH-HHcCHHHHHHHHHH
Confidence 3568999999999999999998854 32 2467888899888887766654444333211111 11123333333345
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHh
Q 024166 168 AMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKL 232 (271)
Q Consensus 168 ~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~ 232 (271)
+++.+..+.++++++++.++..++++..+.|+++.++++++++|+++..+|+|+++.+.|+.+..
T Consensus 80 ~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~ 144 (296)
T PRK15430 80 AVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL 144 (296)
T ss_pred HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 55566778999999999999999999999999999999999999999999999999999998765
No 38
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=98.98 E-value=4.7e-08 Score=84.73 Aligned_cols=138 Identities=7% Similarity=0.061 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcccHHHHHHHhhh--chHHHHHHHHHH
Q 024166 91 IGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQ--HLYVYGVLVFEA 168 (271)
Q Consensus 91 ~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~l~~ 168 (271)
.|.++.+++++++|...+..|. ..+ .++.++.++-.+++.+++++.....+...+....... ..+.+..+.+.+
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~-~~~---~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 77 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKL-LKP---LPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCG 77 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH-hcc---CCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHH
Confidence 4889999999999999999875 332 4688999998888877665543333322111111111 112233344445
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHh
Q 024166 169 MATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKL 232 (271)
Q Consensus 169 ~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~ 232 (271)
+..++.+.+++.++++.++..++++..+.|+++.++++++++|+++..+++|..+.+.|+.+..
T Consensus 78 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~ 141 (256)
T TIGR00688 78 LLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNI 141 (256)
T ss_pred HHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 5566778999999999999999999999999999999999999999999999999999988654
No 39
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=98.91 E-value=3.5e-09 Score=86.18 Aligned_cols=218 Identities=15% Similarity=0.168 Sum_probs=156.9
Q ss_pred hHHHHHHHHHHHHHhhhHhhcCcchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhccCCCCCC
Q 024166 7 TYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTSP 86 (271)
Q Consensus 7 ~~~~~~~l~~~~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~~~~~~ 86 (271)
...+.++++.+++++.-.||..++.+.++.+..+.-.||.+++++. +|+|+...++++..+++.|++++++.|+..
T Consensus 55 ~taPF~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IV--L~D~~~~~kIlaailAI~GiVmiay~DN~~-- 130 (290)
T KOG4314|consen 55 RTAPFSIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIV--LGDRFMGFKILAAILAIGGIVMIAYADNEH-- 130 (290)
T ss_pred eecceEEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHH--hccchhhhhHHHHHHHhCcEEEEEeccchh--
Confidence 4456677788889999999999999999999999999999999999 999999999999999999999999877643
Q ss_pred CchHHHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhH---HHHHHHhhHHHHHHHH--hhcccHHHHHHHhhhchHHH
Q 024166 87 NFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEM---LFCSTVVGLPMLIPPM--LLTGELFKAWNSCSQHLYVY 161 (271)
Q Consensus 87 ~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 161 (271)
...+.|+..+..|+...++|-++.|+......--+.-.. +-+.+++ ...+|.+ .+++. +.++.+...| |
T Consensus 131 a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL~--~~~~~~lIL~~T~V--E~~qsFA~~P--W 204 (290)
T KOG4314|consen 131 ADEIIGIACAVGSAFMAALYKVLFKMFIGNANFGDAAHFMSCLGFFNLC--FISFPALILAFTGV--EHLQSFAAAP--W 204 (290)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHH--HHhhhHHHHHHhch--HHHHHHhhCC--c
Confidence 347999999999999999999998876654211011111 1122221 1122322 34442 3333222233 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhcc
Q 024166 162 GVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLP 234 (271)
Q Consensus 162 ~~l~l~~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~ 234 (271)
..+--...-+...+...+.++....|...|+-..+..........++-+-.++...+.|..+++.|..+....
T Consensus 205 G~l~G~A~L~lAFN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP 277 (290)
T KOG4314|consen 205 GCLCGAAGLSLAFNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIP 277 (290)
T ss_pred hhhhhHHHHHHHHhhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheecc
Confidence 2222111222233455677888889999888888888888888888888788999999999999998776543
No 40
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=98.88 E-value=2.8e-08 Score=88.16 Aligned_cols=214 Identities=14% Similarity=0.176 Sum_probs=125.8
Q ss_pred HHHHHHH-HHHHHHhhhHhhcCcchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhccCCCCCC
Q 024166 8 YVKLSAV-LMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTSP 86 (271)
Q Consensus 8 ~~~~~~l-~~~~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~~~~~~ 86 (271)
....|++ +.++..++..|+.+.|.+..+-+.+...++.++++..+ +|||++++++.|++++++|..++....++..+
T Consensus 52 ~W~~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~--l~e~~~~~~~~G~~l~i~G~~liv~~~~~~~~ 129 (300)
T PF05653_consen 52 LWWIGLLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFF--LGEKLTRRDIVGCALIILGSVLIVIFAPKEEP 129 (300)
T ss_pred HHHHHHHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHH--hcccchHhHHhhHHHHHhhheeeEEeCCCCCC
Confidence 3444443 45677899999999999999999999999999999999 99999999999999999999877653332211
Q ss_pred Cc------------hHHHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHH----HHHh----hccc
Q 024166 87 NF------------SMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLI----PPML----LTGE 146 (271)
Q Consensus 87 ~~------------~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~----~~~~ 146 (271)
.. .+..+........+ .+.-...+|+++.+..--...+++++..-.+ .... +.|+
T Consensus 130 ~~t~~~l~~~~~~~~fl~y~~~~~~~~~-----~L~~~~~~r~g~~~i~vyi~i~sl~Gs~tvl~~K~i~~~i~~~~~g~ 204 (300)
T PF05653_consen 130 IHTLDELIALLSQPGFLVYFILVLVLIL-----ILIFFIKPRYGRRNILVYISICSLIGSFTVLSAKAISILIKLTFSGD 204 (300)
T ss_pred cCCHHHHHHHhcCcceehhHHHHHHHHH-----HHHHhhcchhcccceEEEEEEeccccchhhhHHHHHHHHHHHHhcCc
Confidence 11 11112111111111 1111111222211111000111222211100 0001 1111
Q ss_pred HHHHHHHhhhchHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHhCC--Cchh----hhh
Q 024166 147 LFKAWNSCSQHLYVYGVLVFEAMATFIGQ-VSVLSLIALFGAATTA-MVTTARKAVTLLLSYLIFTK--PLTE----QHG 218 (271)
Q Consensus 147 ~~~~~~~~~~~~~~~~~l~l~~~~~~~~~-~~~~~~i~~~~a~~~s-i~~~l~~v~~~lls~~~f~e--~~s~----~~~ 218 (271)
+ ...+|..|..+.....| .+.| ...+++++++++.... +....-...+++-|.++|+| ..++ ...
T Consensus 205 -----~-~f~~~~~y~l~~~~v~~-~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~ 277 (300)
T PF05653_consen 205 -----N-QFTYPLTYLLLLVLVVT-AVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFL 277 (300)
T ss_pred -----h-hhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHH
Confidence 0 11355556555555445 4555 5568899999998643 34444666888889999997 5566 345
Q ss_pred hHHHHHHHHHHHHhccC
Q 024166 219 TGLLLIAMGITLKLLPA 235 (271)
Q Consensus 219 ~G~~lvl~Gv~l~~~~k 235 (271)
.|..+++.|+++-...|
T Consensus 278 ~G~~~ii~GV~lL~~~~ 294 (300)
T PF05653_consen 278 CGFLIIIIGVFLLSSSK 294 (300)
T ss_pred HHHHHHHHhhheeeccC
Confidence 67777888988776444
No 41
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.83 E-value=2e-08 Score=76.33 Aligned_cols=78 Identities=14% Similarity=0.252 Sum_probs=68.4
Q ss_pred CchhhHHHHHHHHH-HHHHhhhHhhcCcchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhccC
Q 024166 3 NPWKTYVKLSAVLM-GSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLAD 81 (271)
Q Consensus 3 ~~~~~~~~~~~l~~-~~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~ 81 (271)
++++.....+.+.. .+..+.++|++|.+ +...++.++.|++++++++++ +|||++++++++++++++|++++.++|
T Consensus 32 ~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~--~~er~~~~~~~a~~l~~~Gv~li~~~~ 108 (113)
T PF13536_consen 32 KPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLF--FKERLSPRRWLAILLILIGVILIAWSD 108 (113)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHH--hcCCCCHHHHHHHHHHHHHHHHHhhhh
Confidence 45555566677775 78889999999999 578899999999999999999 999999999999999999999999887
Q ss_pred CC
Q 024166 82 AQ 83 (271)
Q Consensus 82 ~~ 83 (271)
.+
T Consensus 109 ~~ 110 (113)
T PF13536_consen 109 LT 110 (113)
T ss_pred cc
Confidence 54
No 42
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.79 E-value=1.6e-07 Score=82.55 Aligned_cols=133 Identities=12% Similarity=0.142 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcccHHHHHHHhhhchHHHHHHHHHHHHHH
Q 024166 93 VIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAMATF 172 (271)
Q Consensus 93 ~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~ 172 (271)
+++.+.++++++...+.+|+..++. ++. .++.....++.+.|........ ..+ ...+...|..+.+.+++..
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~~---~~~--~~~~~~~~~~~l~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~ 74 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADKE---PDF--LWWALLAHSVLLTPYGLWYLAQ-VGW--SRLPATFWLLLAISAVANM 74 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCch---hHH--HHHHHHHHHHHHHHHHHHhccc-CCC--CCcchhhHHHHHHHHHHHH
Confidence 4577889999999999987655442 222 3444444555555433321100 000 0011234445556666777
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhc
Q 024166 173 IGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLL 233 (271)
Q Consensus 173 ~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~ 233 (271)
..+.++++++++.++...+++....|+++.++++++++|+++..+|+|+++++.|+.+...
T Consensus 75 ~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~ 135 (281)
T TIGR03340 75 VYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGL 135 (281)
T ss_pred HHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 8888999999999999999999999999999999999999999999999999999987664
No 43
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.76 E-value=6e-07 Score=69.68 Aligned_cols=121 Identities=12% Similarity=0.136 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcccHHHHHHHhhhchHHHHHHHHHHHH
Q 024166 91 IGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAMA 170 (271)
Q Consensus 91 ~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~ 170 (271)
.|+++.+.+.++.+...++-|+-.++.++.+ .... .. ..+. ...+|. ..++++.++
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~---~~~~-~~---~~~~---------------~~~~p~--~~i~lgl~~ 57 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLPLLS---HAWD-FI---AALL---------------AFGLAL--RAVLLGLAG 57 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCCcc---chhH-HH---HHHH---------------HHhccH--HHHHHHHHH
Confidence 4788999998888888887776655543221 1100 10 0000 001231 235556678
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH--HhCCCchhhhhhHHHHHHHHHHHHhccC
Q 024166 171 TFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYL--IFTKPLTEQHGTGLLLIAMGITLKLLPA 235 (271)
Q Consensus 171 ~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~--~f~e~~s~~~~~G~~lvl~Gv~l~~~~k 235 (271)
.++++.+|.+.+++.+...+..+..+.+....+.++. +|||++|+.+++|+++++.|+++..+.+
T Consensus 58 ~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~ 124 (129)
T PRK02971 58 YALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPT 124 (129)
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCC
Confidence 8899999999999999999999888888888888885 8999999999999999999999977543
No 44
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=98.76 E-value=1.4e-06 Score=75.43 Aligned_cols=206 Identities=14% Similarity=0.138 Sum_probs=140.4
Q ss_pred HHHHHHHHHHHHhhhHhhcCcchhHHHHHh-hcchHHHHHHHHhhcccccccChhhHH----HHHHHHHHHHHHhccCCC
Q 024166 9 VKLSAVLMGSHGLTKGSLAFLNYPAQLMFK-STKVLPVMVMGAFIPGLRRKYPAHEYV----SALLLVVGLILFTLADAQ 83 (271)
Q Consensus 9 ~~~~~l~~~~~~l~~~al~~~~~~~~~i~~-s~~pi~v~~~~~ll~~l~e~~~~~~~l----~~~l~~~Gv~v~~~~~~~ 83 (271)
+.-++++.+++..++.|.+++.++...-+. ....+.+.+++.++ |+|-.+.++++ +++++++|+.+.++.|.+
T Consensus 49 ~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~--fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~ 126 (269)
T PF06800_consen 49 FLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLF--FGEWTTTTQKIIGFLALVLIIIGVILTSYQDKK 126 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhh--cCCCCCcchHHHHHHHHHHHHHHHHHhcccccc
Confidence 444556678889999999988775444332 24556688999999 99988877774 889999999999987765
Q ss_pred CC----CCchHHHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHH-HhhcccHHHHHHHhhhch
Q 024166 84 TS----PNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPP-MLLTGELFKAWNSCSQHL 158 (271)
Q Consensus 84 ~~----~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 158 (271)
.. ..+...|++..+++.+.|..|.+..+. .+.+++...+ ....++.+.... ...... . . .+.
T Consensus 127 ~~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~-----~~~~~~~~~l-PqaiGm~i~a~i~~~~~~~---~--~--~~k 193 (269)
T PF06800_consen 127 SDKSSSKSNMKKGILALLISTIGYWIYSVIPKA-----FHVSGWSAFL-PQAIGMLIGAFIFNLFSKK---P--F--FEK 193 (269)
T ss_pred ccccccccchhhHHHHHHHHHHHHHHHHHHHHh-----cCCChhHhHH-HHHHHHHHHHHHHhhcccc---c--c--ccc
Confidence 43 224577999999999999888877543 2234454443 233333322111 111111 0 0 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhh----hhhHHHHHHHHHHH
Q 024166 159 YVYGVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQ----HGTGLLLIAMGITL 230 (271)
Q Consensus 159 ~~~~~l~l~~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~----~~~G~~lvl~Gv~l 230 (271)
..|..++-+ +.=.+++.+++...++.|..+.=.++-+..+++.+.+.+++||+=+.. .++|.++++.|..+
T Consensus 194 ~~~~nil~G-~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 194 KSWKNILTG-LIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred chHHhhHHH-HHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence 223333322 232588888999999999999999999999999999999999976654 55688888777653
No 45
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.66 E-value=1.4e-06 Score=66.11 Aligned_cols=103 Identities=17% Similarity=0.278 Sum_probs=74.1
Q ss_pred hhHHHHHHHHhhcccHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCC
Q 024166 132 VGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTK 211 (271)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e 211 (271)
++.+++.......+...+.......++..| .+..+.++...++..++++.++.++ .++++..+.|+++.+++.++++|
T Consensus 7 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~e 84 (113)
T PF13536_consen 7 FSVLFLLIILLIRGRLRDLFRALRRKPWLW-LILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFKE 84 (113)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHhCcHHH-HHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhcC
Confidence 344444444344455444443333444333 2222333334778899999999995 77799999999999999999999
Q ss_pred CchhhhhhHHHHHHHHHHHHhccCC
Q 024166 212 PLTEQHGTGLLLIAMGITLKLLPAD 236 (271)
Q Consensus 212 ~~s~~~~~G~~lvl~Gv~l~~~~k~ 236 (271)
+++..+++|..+++.|+.+..+.+.
T Consensus 85 r~~~~~~~a~~l~~~Gv~li~~~~~ 109 (113)
T PF13536_consen 85 RLSPRRWLAILLILIGVILIAWSDL 109 (113)
T ss_pred CCCHHHHHHHHHHHHHHHHHhhhhc
Confidence 9999999999999999999887654
No 46
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.40 E-value=1.5e-05 Score=72.51 Aligned_cols=136 Identities=10% Similarity=0.118 Sum_probs=94.9
Q ss_pred HHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcccHHHHHHHhhhchHHHHHHHHHHHHHHHH
Q 024166 95 MISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAMATFIG 174 (271)
Q Consensus 95 l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~ 174 (271)
.++.--++|+-.+++.|..++.. .++..+.+|-..++.++++|..+..... .... ..+...|..+.+.++++++.
T Consensus 17 ~~~~~q~~~~~~~~~~k~a~~~G--~~~~~~~~~R~~iA~l~Ll~~~~~~~~~-~~~~--~~~~~~~~~l~l~g~~g~~~ 91 (358)
T PLN00411 17 AMLATETSVVGISTLFKVATSKG--LNIYPFLGYSYLLASLLLLPSLFFTNRS-RSLP--PLSVSILSKIGLLGFLGSMY 91 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCC--CCccHHHHHHHHHHHHHHHHHHHHHHHh-cccC--cchHHHHHHHHHHHHHHHHH
Confidence 33444566777778887777543 3466777888777776666543322110 0000 01112333444444554556
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH------hCCCchhhhhhHHHHHHHHHHHHhccC
Q 024166 175 QVSVLSLIALFGAATTAMVTTARKAVTLLLSYLI------FTKPLTEQHGTGLLLIAMGITLKLLPA 235 (271)
Q Consensus 175 ~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~------f~e~~s~~~~~G~~lvl~Gv~l~~~~k 235 (271)
+.+++.++++++|..++++..+.|+++.++++++ ++|+++..+++|+++.+.|+.+....+
T Consensus 92 ~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~ 158 (358)
T PLN00411 92 VITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYH 158 (358)
T ss_pred HHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHcc
Confidence 6788999999999999999999999999999999 699999999999999999998776543
No 47
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.39 E-value=1e-05 Score=69.93 Aligned_cols=118 Identities=14% Similarity=0.067 Sum_probs=85.6
Q ss_pred HhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcccHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024166 104 SFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAMATFIGQVSVLSLIA 183 (271)
Q Consensus 104 a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~i~ 183 (271)
|...+..|..++. ..++....++..+.+.+++.+..... ....+....+..+.++..+.+.+++.+++
T Consensus 2 g~~~~~~k~~~~~--~~~~~~~~~~r~~~~~l~l~~~~~~~----------~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ 69 (260)
T TIGR00950 2 GTTGVVIGQYLEG--QVPLYFAVFRRLIFALLLLLPLLRRR----------PPLKRLLRLLLLGALQIGVFYVLYFVAVK 69 (260)
T ss_pred cchHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHHHhc----------cCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555554443 23566777776666665554432211 01112233455555666778889999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhc
Q 024166 184 LFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLL 233 (271)
Q Consensus 184 ~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~ 233 (271)
+.++..++++..+.|+++.+++.++++|+++..+++|+.+.+.|+.+...
T Consensus 70 ~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~ 119 (260)
T TIGR00950 70 RLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLS 119 (260)
T ss_pred hcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhcc
Confidence 99999999999999999999999999999999999999999999988753
No 48
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=98.37 E-value=1.8e-05 Score=68.56 Aligned_cols=142 Identities=13% Similarity=0.089 Sum_probs=107.0
Q ss_pred hHHHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcccHHHHHHHhhhchHHHHHHHHHH
Q 024166 89 SMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEA 168 (271)
Q Consensus 89 ~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~ 168 (271)
...|+++.+.|-+.+|+...+.+. .+. .++.++..|-.+++.++.+..+.......+..+ ..++|..+..+.+.+
T Consensus 5 ~~~Gil~~l~Ay~lwG~lp~y~kl-l~~---~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~-~~~~p~~~~~~~l~a 79 (293)
T COG2962 5 SRKGILLALLAYLLWGLLPLYFKL-LEP---LPATEILAHRVIWSFPFMLALLFLLRQWRELKQ-LLKQPKTLLMLALTA 79 (293)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHH-Hcc---CCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-HHhCcHHHHHHHHHH
Confidence 457999999999999999988754 343 246788889888888877665555444333333 345776554444333
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhccC
Q 024166 169 MATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPA 235 (271)
Q Consensus 169 ~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~k 235 (271)
.--..--..+.+...+=....+|.--.+.|++.+++|.++++|++|..||+..++...||....+..
T Consensus 80 ~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~ 146 (293)
T COG2962 80 LLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLL 146 (293)
T ss_pred HHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc
Confidence 2212223556788888889999999999999999999999999999999999999999998877654
No 49
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.34 E-value=1.4e-06 Score=76.18 Aligned_cols=212 Identities=14% Similarity=0.126 Sum_probs=126.8
Q ss_pred HHHHHHHhhhHhhcCcchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhccCCCCC--------
Q 024166 14 VLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTS-------- 85 (271)
Q Consensus 14 l~~~~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~~~~~-------- 85 (271)
.+.++...++.|+.|.|.+..+-+-+.+.+..++++..+ +|||++..-.+|++++++|-.+++...++..
T Consensus 73 tm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~--L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~i~t~~el 150 (335)
T KOG2922|consen 73 TMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFF--LKEKLNLLGILGCVLCVVGSTTIVIHAPKEQEIESVEEV 150 (335)
T ss_pred HHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHH--HHHHHHHhhhhheeEEecccEEEEEecCcccccccHHHH
Confidence 345678899999999999999999999999999999999 9999999999999999999888877654432
Q ss_pred ----CCchHHHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHh---hcccHHHHHH--Hhhh
Q 024166 86 ----PNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPML---LTGELFKAWN--SCSQ 156 (271)
Q Consensus 86 ----~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~ 156 (271)
.+..+..+.....-.++ ++.-....+++. -.++.|..+.+..-.+-.+- +...+..... .-..
T Consensus 151 ~~~~~~~~Fliy~~~iil~~~-----il~~~~~p~~g~---tnilvyi~i~s~iGS~tV~svKalg~aiklt~~g~~ql~ 222 (335)
T KOG2922|consen 151 WELATEPGFLVYVIIIILIVL-----ILIFFYAPRYGQ---TNILVYIGICSLIGSLTVMSVKALGIAIKLTFSGNNQLF 222 (335)
T ss_pred HHHhcCccHHHHHHHHHHHHH-----HHheeecccccc---cceeehhhHhhhhcceeeeeHHHHHHHHHHHhcCCcccc
Confidence 11222222222221111 110011112221 12334544433321110000 0000111110 0012
Q ss_pred chHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHhCC--Cchh----hhhhHHHHHHHHH
Q 024166 157 HLYVYGVLVFEAMATFIGQ-VSVLSLIALFGAATTAMVT-TARKAVTLLLSYLIFTK--PLTE----QHGTGLLLIAMGI 228 (271)
Q Consensus 157 ~~~~~~~l~l~~~~~~~~~-~~~~~~i~~~~a~~~si~~-~l~~v~~~lls~~~f~e--~~s~----~~~~G~~lvl~Gv 228 (271)
+|..|..+.....| +..| .-.+++++.+++..++.+. ..-..++++-|.++|+| ..+. ....|...++.|+
T Consensus 223 ~~~ty~~~l~~~~~-~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~~G~ 301 (335)
T KOG2922|consen 223 YPLTWIFLLVVATC-VSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTIFLGI 301 (335)
T ss_pred cHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHhhhee
Confidence 45555544444344 3444 4458999999888755444 44777888999999997 3343 4567788899998
Q ss_pred HHHhccCC
Q 024166 229 TLKLLPAD 236 (271)
Q Consensus 229 ~l~~~~k~ 236 (271)
++....|.
T Consensus 302 flL~~~kd 309 (335)
T KOG2922|consen 302 FLLHRTKD 309 (335)
T ss_pred eEeeeecc
Confidence 88754443
No 50
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=98.32 E-value=1.5e-06 Score=66.14 Aligned_cols=71 Identities=11% Similarity=0.173 Sum_probs=63.4
Q ss_pred hhHHHHHHH-HHHHHHhhhHhhcCcchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHh
Q 024166 6 KTYVKLSAV-LMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFT 78 (271)
Q Consensus 6 ~~~~~~~~l-~~~~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~ 78 (271)
......+++ ..++..+.+.++++++++..+++..+.|+++.++++++ +||++++++++++.++++|+.++.
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~--~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 54 LWLLFLGLLGTALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLF--LGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred hhhhHhhccceehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHHHHHHH
Confidence 345555665 46788999999999999999999999999999999999 999999999999999999998764
No 51
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.21 E-value=7.8e-06 Score=61.82 Aligned_cols=65 Identities=11% Similarity=0.043 Sum_probs=59.7
Q ss_pred HHHHHHHHhhhHhhcCcchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhc
Q 024166 13 AVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTL 79 (271)
Q Consensus 13 ~l~~~~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~ 79 (271)
+++..+..+...+++.+|.+.+..+-++.+++++++++++ +|||++.+|++++.++++|+.++..
T Consensus 45 ~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~--f~E~ls~~~~~Gi~lii~Gv~~i~~ 109 (111)
T PRK15051 45 ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKL--WHEPVSPRHWCGVAFIIGGIVILGS 109 (111)
T ss_pred HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHH--hCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 3456788899999999999999999999999999999999 9999999999999999999988753
No 52
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.15 E-value=3.5e-05 Score=58.25 Aligned_cols=64 Identities=14% Similarity=0.122 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHh
Q 024166 169 MATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKL 232 (271)
Q Consensus 169 ~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~ 232 (271)
++-.+++.++...+++.+...+.....+.++.+.++|+++|||++|+.+++|+.+++.|+.+..
T Consensus 45 ~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 45 ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 4445678889999999999998888889999999999999999999999999999999998754
No 53
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.14 E-value=0.00015 Score=64.08 Aligned_cols=128 Identities=16% Similarity=0.043 Sum_probs=88.8
Q ss_pred HHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcccHHHHHHHhhhchHHHH-HHHHHHHHHHHH
Q 024166 96 ISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYG-VLVFEAMATFIG 174 (271)
Q Consensus 96 ~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~l~~~~~~~~ 174 (271)
.+.-.+.||...+..|...+ +.++.+..++-..++.+++++.....+.. . .+...|. ....+.+....+
T Consensus 13 ~~~~~~iWg~~~~~~K~~~~---~~~p~~~~~~R~~~a~l~ll~~~~~~~~~-----~--~~~~~~~~~~~~g~~~~~~~ 82 (292)
T PRK11272 13 LFALYIIWGSTYLVIRIGVE---SWPPLMMAGVRFLIAGILLLAFLLLRGHP-----L--PTLRQWLNAALIGLLLLAVG 82 (292)
T ss_pred HHHHHHHHhhHHHHHHHHhc---cCCHHHHHHHHHHHHHHHHHHHHHHhCCC-----C--CcHHHHHHHHHHHHHHHHHH
Confidence 34446788998888875444 34678888888887776665543332210 0 0111222 233333333455
Q ss_pred HHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhcc
Q 024166 175 QVSVLSLI-ALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLP 234 (271)
Q Consensus 175 ~~~~~~~i-~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~ 234 (271)
+.+++... ++.++..+++...+.|+++.+++.+ ++|+++..+++|..+.+.|+.+....
T Consensus 83 ~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~ 142 (292)
T PRK11272 83 NGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSG 142 (292)
T ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcC
Confidence 66667777 8889999999999999999999985 79999999999999999999877543
No 54
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.09 E-value=0.00014 Score=66.14 Aligned_cols=139 Identities=14% Similarity=0.066 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcccHHHHHHHhhhchHHHHHHHHHHH
Q 024166 90 MIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAM 169 (271)
Q Consensus 90 ~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~ 169 (271)
+.-..+++.--.+......++|.+++..+ .|+.+..+..+++.++..+.... +- .+... .......|..++..++
T Consensus 48 ~~~~~~~~~wy~~s~~~~~~nK~vl~~~~--~P~~l~~~~~~~~~l~~~~~~~~-~~-~~~~~-~~~~~~~~~~llp~gl 122 (350)
T PTZ00343 48 WKLALLFLTWYALNVLYVVDNKLALNMLP--LPWTISSLQLFVGWLFALLYWAT-GF-RKIPR-IKSLKLFLKNFLPQGL 122 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCC--hhHHHHHHHHHHHHHHHHHHHHh-CC-CCCCC-CCCHHHHHHHHHHHHH
Confidence 33333343333344555677888776642 26777766666654443322111 10 00000 0001123444555556
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhc
Q 024166 170 ATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLL 233 (271)
Q Consensus 170 ~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~ 233 (271)
++..++...+.+++..++..++++..+.|++++++++++++|+++..++.|+++++.|+.+...
T Consensus 123 ~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~ 186 (350)
T PTZ00343 123 CHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASV 186 (350)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheec
Confidence 6666676677999999999999999999999999999999999999999999999999998763
No 55
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.09 E-value=0.00012 Score=64.99 Aligned_cols=120 Identities=15% Similarity=0.118 Sum_probs=82.6
Q ss_pred hHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcccHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024166 106 LGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAMATFIGQVSVLSLIALF 185 (271)
Q Consensus 106 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~i~~~ 185 (271)
.+.++|..++.. ..|..+.+.....+.....+. ...+. .+. ...+...|..+...+++.++.+.+.+.+++++
T Consensus 17 ~~~~NK~~l~~~--~~P~~~~~~~~~~~~~~~~~~-~~~~~-~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~ 89 (302)
T TIGR00817 17 FNIYNKKLLNVF--PYPYFKTLISLAVGSLYCLLS-WSSGL-PKR---LKISSALLKLLLPVAIVHTIGHVTSNVSLSKV 89 (302)
T ss_pred HHHHHHHHHhhC--ChhHHHHHHHHHHHHHHHHHH-HHhCC-CCC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 346777777643 235655555555544333221 00110 000 00112234445555556677788899999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHh
Q 024166 186 GAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKL 232 (271)
Q Consensus 186 ~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~ 232 (271)
++...+++..+.|+++.++++++++|+++..++.|.++.+.|+.+..
T Consensus 90 s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~ 136 (302)
T TIGR00817 90 AVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALAS 136 (302)
T ss_pred cHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999998654
No 56
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=98.09 E-value=0.00013 Score=64.92 Aligned_cols=131 Identities=15% Similarity=0.165 Sum_probs=89.5
Q ss_pred HhhHhHHHHHHhhCCCC-ChhhHHHHHHHhhHHHHHHHHhhcccHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 024166 104 SFLGNLQEAIFTMNPET-TQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAMATFIGQVSVLSLI 182 (271)
Q Consensus 104 a~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~i 182 (271)
..+..+||++.++.... .+.-+.+.+....+....+....... ......| ...+ ...+++..++..+.+..+
T Consensus 13 ~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~-----~~~~~~~-~~~~-~~~~~~~~~~~~~~~~al 85 (303)
T PF08449_consen 13 CSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKF-----PKSRKIP-LKKY-AILSFLFFLASVLSNAAL 85 (303)
T ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccc-----cCCCcCh-HHHH-HHHHHHHHHHHHHHHHHH
Confidence 34557899998876443 23444444444444443332222220 0001122 1222 233455567778888999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhccCCCCccc
Q 024166 183 ALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKPIK 241 (271)
Q Consensus 183 ~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~k~~~~~~ 241 (271)
++.+-.+..+....+++.+++++.++++++.+..++++..++..|+.+....+.+.+++
T Consensus 86 ~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~ 144 (303)
T PF08449_consen 86 KYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSS 144 (303)
T ss_pred HhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccc
Confidence 99999999999999999999999999999999999999999999999998776544443
No 57
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.08 E-value=0.00014 Score=64.53 Aligned_cols=130 Identities=15% Similarity=0.054 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcccHHHHHHHhhhchHHHHHHHHHHHH
Q 024166 91 IGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAMA 170 (271)
Q Consensus 91 ~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~ 170 (271)
.++++++.++++||......|...+. .+|....++-...+.+++++. . . .++ ..+++ +..+...++.
T Consensus 4 ~~~l~~l~a~~~Wg~~~~~~k~~~~~---~~P~~~~~~R~~~a~l~l~~~--~-~-~~~----~~~~~--~~~~~~~~l~ 70 (295)
T PRK11689 4 KATLIGLIAILLWSTMVGLIRGVSES---LGPVGGAAMIYSVSGLLLLLT--V-G-FPR----LRQFP--KRYLLAGGLL 70 (295)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHcc---CChHHHHHHHHHHHHHHHHHH--c-c-ccc----ccccc--HHHHHHHhHH
Confidence 45777888899999999888765544 357777776666665554432 1 1 111 01111 2222333333
Q ss_pred HHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhc
Q 024166 171 TFIGQVSVLSLIA----LFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLL 233 (271)
Q Consensus 171 ~~~~~~~~~~~i~----~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~ 233 (271)
....+.+.+..++ ..++..++++..+.|+++.++++++++|+++..+++|+++.+.|+.+...
T Consensus 71 ~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~ 137 (295)
T PRK11689 71 FVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLG 137 (295)
T ss_pred HHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheec
Confidence 2233344455554 45777889999999999999999999999999999999999999987664
No 58
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.04 E-value=0.00029 Score=62.52 Aligned_cols=124 Identities=10% Similarity=0.039 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcccHHHHHHHhhhchHHHHHHHHHHHHHH-
Q 024166 94 IMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAMATF- 172 (271)
Q Consensus 94 ~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~- 172 (271)
++.+.++++||...+..|...++ .++....++-..++.+.+++. .... +.+ +..+...++...
T Consensus 7 l~~l~~~~~Wg~~~~~~k~~~~~---~~p~~~~~~R~~~a~~~l~~~--~~~~---------~~~--~~~~~~~g~~~~~ 70 (299)
T PRK11453 7 VLALLVVVVWGLNFVVIKVGLHN---MPPLMLAGLRFMLVAFPAIFF--VARP---------KVP--LNLLLGYGLTISF 70 (299)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHHH--hcCC---------CCc--hHHHHHHHHHHHH
Confidence 45677888999999998765543 467888887776654433332 1110 111 111222222222
Q ss_pred HHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhc
Q 024166 173 IGQVSVLSLIAL-FGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLL 233 (271)
Q Consensus 173 ~~~~~~~~~i~~-~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~ 233 (271)
..+.+++...++ .++..++++..+.|+++.++++++++|+++..+++|.++.+.|+.+...
T Consensus 71 ~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~ 132 (299)
T PRK11453 71 GQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIE 132 (299)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhcc
Confidence 233456677776 5778899999999999999999999999999999999999999987764
No 59
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=97.94 E-value=6.4e-05 Score=58.35 Aligned_cols=72 Identities=14% Similarity=0.103 Sum_probs=60.8
Q ss_pred HHHHHH-HHHHHHHhhhHhhcCcchhHHHHHhhcchHHHHHHHHh--hcccccccChhhHHHHHHHHHHHHHHhccC
Q 024166 8 YVKLSA-VLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAF--IPGLRRKYPAHEYVSALLLVVGLILFTLAD 81 (271)
Q Consensus 8 ~~~~~~-l~~~~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~l--l~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~ 81 (271)
+..+++ ++.++..+.+.+++..+.+.+.-+.+..++.+.+.++. + +||+++.++++|++++++|+.++..++
T Consensus 50 ~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~--~~E~ls~~~~iGi~lIi~GV~lv~~~~ 124 (129)
T PRK02971 50 AVLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPW--FNETFSLKKTLGVACIMLGVWLINLPT 124 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHHHHHhccCC
Confidence 334444 66778999999999999999998888888888888885 7 899999999999999999999987543
No 60
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=97.89 E-value=0.00038 Score=61.59 Aligned_cols=131 Identities=15% Similarity=0.114 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcccHHHHHHHhhhchHHHHHHHHHHHHH
Q 024166 92 GVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAMAT 171 (271)
Q Consensus 92 G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~ 171 (271)
|++++++++++||...+..|+.. . .++.+.+ . ..++..+.......... . . ...+..+..-.+.++.=
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~-g---~~~~~~~-~-~~~g~l~~~~~~~~~~~---~-~--~~~~~~~~~g~l~G~~w 69 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG-G---GPYSQTL-G-TTFGALILSIAIAIFVL---P-E--FWALSIFLVGLLSGAFW 69 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC-C---CHHHHHH-H-HHHHHHHHHHHHHHHhC---C-c--ccccHHHHHHHHHHHHH
Confidence 67899999999999999887653 1 2233333 2 22232222221111110 0 0 01133333223333333
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHhCCCchhhh----hhHHHHHHHHHHHHhcc
Q 024166 172 FIGQVSVLSLIALFGAATTAMVTT-ARKAVTLLLSYLIFTKPLTEQH----GTGLLLIAMGITLKLLP 234 (271)
Q Consensus 172 ~~~~~~~~~~i~~~~a~~~si~~~-l~~v~~~lls~~~f~e~~s~~~----~~G~~lvl~Gv~l~~~~ 234 (271)
.+++.+++.++++.|...+-.+.+ +.++...+++.++|||+.+..+ ++|.++++.|+.+....
T Consensus 70 ~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~ 137 (290)
T TIGR00776 70 ALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRS 137 (290)
T ss_pred HhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEec
Confidence 578899999999999999877766 8888999999999999999999 99999999998887544
No 61
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.88 E-value=0.00062 Score=61.34 Aligned_cols=139 Identities=14% Similarity=0.074 Sum_probs=92.8
Q ss_pred chHHHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhH--HHHHH---HHhhcccHHHHHHHhhhchHHHH
Q 024166 88 FSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGL--PMLIP---PMLLTGELFKAWNSCSQHLYVYG 162 (271)
Q Consensus 88 ~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 162 (271)
+...|+++++++.+|+|...+-+|| .++++ +|.. |- ..+. .++.| ..+..+++.+... +.++..+.
T Consensus 4 ~~~~G~~~~~i~~~~~GS~~~p~K~-~k~w~----wE~~-W~-v~gi~~wl~~~~~~g~~~~~~f~~~~~--~~~~~~~~ 74 (345)
T PRK13499 4 AIILGIIWHLIGGASSGSFYAPFKK-VKKWS----WETM-WS-VGGIFSWLILPWLIAALLLPDFWAYYS--SFSGSTLL 74 (345)
T ss_pred hhHHHHHHHHHHHHHhhcccccccc-cCCCc----hhHH-HH-HHHHHHHHHHHHHHHHHHhhhHHHHHH--hcCHHHHH
Confidence 4678999999999999999988876 34332 4433 32 1111 11122 2223344333322 13444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHhCCCc-------hhhhhhHHHHHHHHHHHHhcc
Q 024166 163 VLVFEAMATFIGQVSVLSLIALFGAAT-TAMVTTARKAVTLLLSYLIFTKPL-------TEQHGTGLLLIAMGITLKLLP 234 (271)
Q Consensus 163 ~l~l~~~~~~~~~~~~~~~i~~~~a~~-~si~~~l~~v~~~lls~~~f~e~~-------s~~~~~G~~lvl~Gv~l~~~~ 234 (271)
.-.+.++.=.+++..++..+++.|-+. ..+..-+.-+.+++++.+++||-- ....++|+++++.|+.+..+.
T Consensus 75 ~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~A 154 (345)
T PRK13499 75 PVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRA 154 (345)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 444555555689999999999999775 667777888999999999998622 245788999999999999874
Q ss_pred C
Q 024166 235 A 235 (271)
Q Consensus 235 k 235 (271)
-
T Consensus 155 g 155 (345)
T PRK13499 155 G 155 (345)
T ss_pred h
Confidence 3
No 62
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=97.86 E-value=0.0012 Score=57.26 Aligned_cols=142 Identities=13% Similarity=0.094 Sum_probs=94.1
Q ss_pred hHHHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcccHHHHHHHhhhchHHHHHHHHHH
Q 024166 89 SMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEA 168 (271)
Q Consensus 89 ~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~ 168 (271)
...+....+...+.++......+...+. ..+.....++......+...+...... ........+ .+..+....
T Consensus 5 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~ 77 (292)
T COG0697 5 LLLGLLALLLWGLLWGLSFIALKLAVES--LDPFLFAAALRFLIAALLLLPLLLLEP----RGLRPALRP-WLLLLLLAL 77 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc--cCChHHHHHHHHHHHHHHHHHHHHhhc----ccccccccc-hHHHHHHHH
Confidence 4567777777777888877776654433 123344444444444333221111100 000001111 233444555
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhhhhHHHHHHHHHHHHhccCCC
Q 024166 169 MATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSY-LIFTKPLTEQHGTGLLLIAMGITLKLLPADD 237 (271)
Q Consensus 169 ~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~-~~f~e~~s~~~~~G~~lvl~Gv~l~~~~k~~ 237 (271)
++.......++..+++.++..++++....|+++.+++. ++++|+++..++.|..+.+.|+.+.......
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~ 147 (292)
T COG0697 78 LGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGG 147 (292)
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCc
Confidence 66677889999999999999999999999999999997 7779999999999999999999988866544
No 63
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.80 E-value=0.00029 Score=53.84 Aligned_cols=67 Identities=16% Similarity=0.138 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhccC
Q 024166 169 MATFIGQVSVLSLIALFGAAT-TAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPA 235 (271)
Q Consensus 169 ~~~~~~~~~~~~~i~~~~a~~-~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~k 235 (271)
++-++++.++...+++.+-.. .++...+..+.+.+.++++|||++|+.+++|+.+++.|+.......
T Consensus 38 ~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 38 VMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 333567777888888877665 5666778889999999999999999999999999999998775443
No 64
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.80 E-value=0.00084 Score=60.41 Aligned_cols=78 Identities=10% Similarity=0.203 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhccCCCC
Q 024166 160 VYGVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDK 238 (271)
Q Consensus 160 ~~~~l~l~~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~k~~~ 238 (271)
+|.+++++ ++=+-++.++..+.+.++.+...++.....++++++|++++++++++.+++|+++++.|+.+........
T Consensus 79 ~w~y~lla-~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~ 156 (334)
T PF06027_consen 79 WWKYFLLA-LLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLS 156 (334)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccc
Confidence 45556554 6668899999999999999999999999999999999999999999999999999999999887665443
No 65
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.72 E-value=0.00056 Score=51.54 Aligned_cols=66 Identities=18% Similarity=0.164 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhccC
Q 024166 170 ATFIGQVSVLSLIALFGAAT-TAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPA 235 (271)
Q Consensus 170 ~~~~~~~~~~~~i~~~~a~~-~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~k 235 (271)
+-.+++.++..++++.+-.. .++-..+..+.+.+.++++|||++|+.+++|+.+++.|+...+...
T Consensus 39 ~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~ 105 (110)
T PRK09541 39 CYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 33466677778888877665 6666778889999999999999999999999999999999886544
No 66
>COG2510 Predicted membrane protein [Function unknown]
Probab=97.63 E-value=4e-05 Score=58.39 Aligned_cols=71 Identities=20% Similarity=0.250 Sum_probs=60.4
Q ss_pred hHHHHHHHH-HHHHHhhhHhhcCcchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhc
Q 024166 7 TYVKLSAVL-MGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTL 79 (271)
Q Consensus 7 ~~~~~~~l~-~~~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~ 79 (271)
.++.+|.+- ..+..+.+.|++.=+++-..-+..++|++++++++++ +|||++..+|+|+.++++|+.+++.
T Consensus 68 lflilSGla~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lf--L~E~ls~~~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 68 LFLILSGLAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILF--LGERLSLPTWIGIVLIVIGAILVSL 139 (140)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHH--hcCCCCHHHHHHHHHHHhCeeeEec
Confidence 345555554 4466788999999888888889999999999999999 9999999999999999999887653
No 67
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=97.61 E-value=0.00096 Score=57.56 Aligned_cols=71 Identities=17% Similarity=0.288 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhccCCCCc
Q 024166 169 MATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKP 239 (271)
Q Consensus 169 ~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~k~~~~ 239 (271)
+.-++.+.+.+.++++.+|.+..+....|.+++.++++++++.+++..||+++.+...|+.+........+
T Consensus 25 ~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~~ 95 (244)
T PF04142_consen 25 LLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQSS 95 (244)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcccc
Confidence 34456778889999999999999999999999999999999999999999999999999998887655443
No 68
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.59 E-value=0.022 Score=51.47 Aligned_cols=221 Identities=9% Similarity=0.019 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHhhhHhhcCcchhHHHHH-hhcchHHHHHHHHhhccccccc-------ChhhHHHHHHHHHHHHHHhc--
Q 024166 10 KLSAVLMGSHGLTKGSLAFLNYPAQLMF-KSTKVLPVMVMGAFIPGLRRKY-------PAHEYVSALLLVVGLILFTL-- 79 (271)
Q Consensus 10 ~~~~l~~~~~~l~~~al~~~~~~~~~i~-~s~~pi~v~~~~~ll~~l~e~~-------~~~~~l~~~l~~~Gv~v~~~-- 79 (271)
+-+++...++.....+.+|+.++...-+ .-...+...++..++ ++|=. ...-.++++++++|+.+...
T Consensus 78 l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~--~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag 155 (345)
T PRK13499 78 LFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPII--NGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAG 155 (345)
T ss_pred HHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH--ccccccccccchHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455567788899999999888666532 335566677777777 66432 23345799999999999988
Q ss_pred --cCCCC-----CCCchHHHHHHHHHHHHHHHhhH-------hHHHHHHhhCCCCChhhHHH-H-HHHhhHHH-HHHHHh
Q 024166 80 --ADAQT-----SPNFSMIGVIMISGALIMDSFLG-------NLQEAIFTMNPETTQMEMLF-C-STVVGLPM-LIPPML 142 (271)
Q Consensus 80 --~~~~~-----~~~~~~~G~~l~l~s~~~~a~~~-------v~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~-~~~~~~ 142 (271)
.|.+. .+.+.-.|+++++++.+.++.++ ...+...+. +..+++..+. + ..+.+..+ .+....
T Consensus 156 ~~k~~~~~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~-g~~~~~~~lp~~~~~~~G~~~~n~~~~~ 234 (345)
T PRK13499 156 QLKERKMGIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAAL-GVDPLYAALPSYVVIMGGGAITNLGFCF 234 (345)
T ss_pred hhcccccccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhc-CCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54421 12356899999999999998888 443322111 1111221111 1 11111111 111111
Q ss_pred h---cccHHHHHHHhh-hchHHHHHH---HHHHHHHHHHHHHHHHHHHHHhHHHHHH---HH-HHHHHHHHHHHHHHhCC
Q 024166 143 L---TGELFKAWNSCS-QHLYVYGVL---VFEAMATFIGQVSVLSLIALFGAATTAM---VT-TARKAVTLLLSYLIFTK 211 (271)
Q Consensus 143 ~---~~~~~~~~~~~~-~~~~~~~~l---~l~~~~~~~~~~~~~~~i~~~~a~~~si---~~-~l~~v~~~lls~~~f~e 211 (271)
. .++-.+...... ..+..+... .+.++.=.+++.++...-++.|.....+ ++ .+.-+++.+.+. ++||
T Consensus 235 ~~~~k~~~~~~~~~~~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE 313 (345)
T PRK13499 235 IRLAKNKDLSLKADFSLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKE 313 (345)
T ss_pred HHHhhCCCcccchhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhh
Confidence 0 111000000000 111123222 2222332345566666667765444333 44 666688999999 4999
Q ss_pred Cch------hhhhhHHHHHHHHHHHHhcc
Q 024166 212 PLT------EQHGTGLLLIAMGITLKLLP 234 (271)
Q Consensus 212 ~~s------~~~~~G~~lvl~Gv~l~~~~ 234 (271)
.=+ ...++|.++++.|..+....
T Consensus 314 ~K~a~~k~~~~l~~G~vliI~g~~lig~~ 342 (345)
T PRK13499 314 WKGASRRPVRVLSLGCVVIILAANIVGLG 342 (345)
T ss_pred ccCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence 666 66789999999998876643
No 69
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.58 E-value=0.00054 Score=52.37 Aligned_cols=73 Identities=8% Similarity=0.148 Sum_probs=61.7
Q ss_pred hHHHHHHHHHHHHHhhhHhhcCcchhHHHHH-hhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhccC
Q 024166 7 TYVKLSAVLMGSHGLTKGSLAFLNYPAQLMF-KSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLAD 81 (271)
Q Consensus 7 ~~~~~~~l~~~~~~l~~~al~~~~~~~~~i~-~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~ 81 (271)
.....-+++..+..+...+++++|.+.+..+ ...-.+.+.+.+.++ +||+++..+++++.++++|+..+...+
T Consensus 32 ~~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~--f~E~~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 32 GFILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLL--FDESLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHH--hCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 4455566778889999999999999777655 457888899999999 999999999999999999999886644
No 70
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.44 E-value=0.01 Score=46.60 Aligned_cols=131 Identities=21% Similarity=0.294 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcccHHHHHHHhhhchHHHHHHHHHHHHHH
Q 024166 93 VIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAMATF 172 (271)
Q Consensus 93 ~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~ 172 (271)
.++.+.+-++-+++..++.++-++.+ +++.-.+.+...+...+....++.++. ........|+ |. +++++.++
T Consensus 3 ~lla~~aG~~i~~q~~~N~~L~~~~g--s~~~as~i~~~~G~i~~~i~~~~~~~~--~~~~~~~~p~-w~--~lGG~lG~ 75 (138)
T PF04657_consen 3 ILLALLAGALIALQAAFNGQLGKALG--SPLVASFISFGVGFILLLIILLITGRP--SLASLSSVPW-WA--YLGGLLGV 75 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHHHHHHHHhccc--ccchhccCCh-HH--hccHHHHH
Confidence 34555555566666666666655533 356555566666665555444444432 1111222233 33 33667777
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHH-Hh---CCCchhhhhhHHHHHHHHHHH
Q 024166 173 IGQVSVLSLIALFGAATTAMVTTARKA-VTLLLSYL-IF---TKPLTEQHGTGLLLIAMGITL 230 (271)
Q Consensus 173 ~~~~~~~~~i~~~~a~~~si~~~l~~v-~~~lls~~-~f---~e~~s~~~~~G~~lvl~Gv~l 230 (271)
+.-.+....+.+.|+..+........+ .+.++..+ +| ++++++.+.+|.++++.|+.+
T Consensus 76 ~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 76 FFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 777778889999999998888777554 45555664 23 368999999999999999864
No 71
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=97.43 E-value=0.0027 Score=56.42 Aligned_cols=120 Identities=18% Similarity=0.145 Sum_probs=86.2
Q ss_pred chHHHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcccHHHHHHHhhhchHHHHHHHHH
Q 024166 88 FSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFE 167 (271)
Q Consensus 88 ~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~ 167 (271)
....|..+++.++++.+...++||+-..|.++.+ ..-- .. .... .++|.||.=+.+.
T Consensus 4 ~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~-~~~~--~~-------------------~~~~-l~~~~W~~G~~~~ 60 (300)
T PF05653_consen 4 DFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGS-LRAG--SG-------------------GRSY-LRRPLWWIGLLLM 60 (300)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cccc--ch-------------------hhHH-HhhHHHHHHHHHH
Confidence 4688999999999999999999998776653211 1100 00 0001 1244444322222
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhcc
Q 024166 168 AMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLP 234 (271)
Q Consensus 168 ~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~ 234 (271)
.++....+..+...+++..+.++.+.-+++.+++..+++|+++...++|..+++.|..+....
T Consensus 61 ----~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~ 123 (300)
T PF05653_consen 61 ----VLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIF 123 (300)
T ss_pred ----hcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEe
Confidence 244455556777788888999999999999999999999999999999999999998876544
No 72
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=97.42 E-value=0.00052 Score=54.35 Aligned_cols=69 Identities=9% Similarity=0.136 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHhhhHhhcCcchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHh
Q 024166 8 YVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFT 78 (271)
Q Consensus 8 ~~~~~~l~~~~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~ 78 (271)
...-+++.+..+...+..+++++.-++++....+.+.+.++++++ ++|+++.+++.|++++++|+.+..
T Consensus 84 ~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~--f~~~~t~~~~~G~~l~~~G~~~Ys 152 (153)
T PF03151_consen 84 LILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIF--FGEPITPLQIIGIVLALVGVLLYS 152 (153)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhh--cCCcCCHHHHHHHHHHHHHHheee
Confidence 344455567778899999999999999999999999999999999 999999999999999999998754
No 73
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.37 E-value=0.0017 Score=48.94 Aligned_cols=71 Identities=13% Similarity=0.185 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHhhhHhhcCcchhHHHHHhh-cchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhccC
Q 024166 9 VKLSAVLMGSHGLTKGSLAFLNYPAQLMFKS-TKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLAD 81 (271)
Q Consensus 9 ~~~~~l~~~~~~l~~~al~~~~~~~~~i~~s-~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~ 81 (271)
...-+++.++..+...+++.+|.+.+...-+ ...+.+.+.++++ |||+.+..+++++.++++|+..+...+
T Consensus 34 i~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~--f~e~~~~~~~~gi~lIi~GVi~l~l~~ 105 (110)
T PRK09541 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGF--FGQRLDLPAIIGMMLICAGVLVINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHH--hCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3445567778888899999999987776644 5777889999999 999999999999999999999886543
No 74
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.36 E-value=0.0026 Score=47.26 Aligned_cols=63 Identities=21% Similarity=0.097 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhcc
Q 024166 172 FIGQVSVLSLIALFGAAT-TAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLP 234 (271)
Q Consensus 172 ~~~~~~~~~~i~~~~a~~-~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~ 234 (271)
.+++.+....+|+.+-.. .++-+-+..+.+.+.++++|+|++++.+++|+.+++.|+..-+..
T Consensus 41 ~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~ 104 (106)
T COG2076 41 GLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG 104 (106)
T ss_pred HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence 466677778888877654 788899999999999999999999999999999999999876654
No 75
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=97.35 E-value=0.001 Score=57.48 Aligned_cols=133 Identities=11% Similarity=0.019 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHH-HHHHHhhcccHHHHHHHhhhchHHHHHHHHHHHH
Q 024166 92 GVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPM-LIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAMA 170 (271)
Q Consensus 92 G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~ 170 (271)
|++.+++|++++|...+=.|| .++.+.+-...+.+. +..+ .+...++.+ .|..+..-.+++..
T Consensus 1 G~~a~~va~~~fGs~~vPvK~----~~~gDg~~fQw~~~~-~i~~~g~~v~~~~~-----------~p~f~p~amlgG~l 64 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKK----FDTGDGFFFQWVMCS-GIFLVGLVVNLILG-----------FPPFYPWAMLGGAL 64 (254)
T ss_pred CchhHHHHHHHhcccceeeEe----ccCCCcHHHHHHHHH-HHHHHHHHHHHhcC-----------CCcceeHHHhhhhh
Confidence 677888899999988776543 333333322222222 1111 111111111 12221111222222
Q ss_pred HHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHH-HhCC-----CchhhhhhHHHHHHHHHHHHhccCCCCcc
Q 024166 171 TFIGQVSVLSLIALFGAAT-TAMVTTARKAVTLLLSYL-IFTK-----PLTEQHGTGLLLIAMGITLKLLPADDKPI 240 (271)
Q Consensus 171 ~~~~~~~~~~~i~~~~a~~-~si~~~l~~v~~~lls~~-~f~e-----~~s~~~~~G~~lvl~Gv~l~~~~k~~~~~ 240 (271)
=+.|+.+..-+++..|-.. ..+-+...-+..-..|-+ +||. .-.+.+.+|+++++.|..++...|..+++
T Consensus 65 W~~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~~~ 141 (254)
T PF07857_consen 65 WATGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEEKE 141 (254)
T ss_pred hhcCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCCCC
Confidence 2344444455555555332 222222233333333332 4543 34789999999999999999988776644
No 76
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.35 E-value=0.0017 Score=48.22 Aligned_cols=75 Identities=11% Similarity=0.096 Sum_probs=60.2
Q ss_pred chhhHHHHHHHHHHHHHhhhHhhcCcchhHHHH-HhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhcc
Q 024166 4 PWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLM-FKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLA 80 (271)
Q Consensus 4 ~~~~~~~~~~l~~~~~~l~~~al~~~~~~~~~i-~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~ 80 (271)
++++....-+++..+..+...|++++|.+.+.. ---.-.+.+.+.++++ |||+.+..+++++.++++|+...-..
T Consensus 29 ~~~~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~--f~E~l~~~~~~gl~LiiaGvi~Lk~~ 104 (106)
T COG2076 29 RLWPSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLL--FGESLSLIKLLGLALILAGVIGLKLG 104 (106)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHh--cCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence 344555666677888999999999999966553 3335667788999999 99999999999999999999977543
No 77
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.30 E-value=0.0038 Score=46.60 Aligned_cols=64 Identities=16% Similarity=0.089 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhc
Q 024166 170 ATFIGQVSVLSLIALFGAAT-TAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLL 233 (271)
Q Consensus 170 ~~~~~~~~~~~~i~~~~a~~-~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~ 233 (271)
+-.+++.+....+|+.+-.. .++-..+..+.+.+.++++|||++|+.+++|+.+++.|+..-+.
T Consensus 38 ~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l 102 (105)
T PRK11431 38 AMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL 102 (105)
T ss_pred HHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 33466777778888877654 78888899999999999999999999999999999999987643
No 78
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.28 E-value=0.002 Score=48.08 Aligned_cols=71 Identities=15% Similarity=0.171 Sum_probs=58.2
Q ss_pred hHHHHHHHHHHHHHhhhHhhcCcchhHHHHHhh-cchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhc
Q 024166 7 TYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKS-TKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTL 79 (271)
Q Consensus 7 ~~~~~~~l~~~~~~l~~~al~~~~~~~~~i~~s-~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~ 79 (271)
+....-+++..+..+...+++.+|.+.+..+=+ .-.+.+.+.+.++ +||+.+..+++++.++++|+.....
T Consensus 31 ~~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~--f~e~~~~~~~~gi~lIi~GVv~l~l 102 (105)
T PRK11431 31 PSIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVL--LGESASPARLLSLALIVAGIIGLKL 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHH--hCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 344556677788899999999999976654433 6777888999999 9999999999999999999997643
No 79
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.26 E-value=0.0043 Score=46.60 Aligned_cols=61 Identities=16% Similarity=0.214 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHh
Q 024166 172 FIGQVSVLSLIALFGAAT-TAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKL 232 (271)
Q Consensus 172 ~~~~~~~~~~i~~~~a~~-~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~ 232 (271)
.+++.+....+|+.+-.. .++-..+..+.+.+.++++|||++|+.+++|+.+++.|+...+
T Consensus 46 ~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 46 LAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 466677778888877664 7888888999999999999999999999999999999998753
No 80
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.23 E-value=0.0024 Score=47.92 Aligned_cols=68 Identities=7% Similarity=0.234 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHhhhHhhcCcchhHHHHH-hhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHH
Q 024166 8 YVKLSAVLMGSHGLTKGSLAFLNYPAQLMF-KSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILF 77 (271)
Q Consensus 8 ~~~~~~l~~~~~~l~~~al~~~~~~~~~i~-~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~ 77 (271)
....-+++..+..+...+++++|.+.+..+ -..-.+.+.+.+.++ +||+.+..|++++.++++|+...
T Consensus 38 ~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~--f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 38 GILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWIL--FGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHHHHHh
Confidence 444556667788899999999999766543 335667788999999 99999999999999999999875
No 81
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=97.13 E-value=0.0017 Score=57.39 Aligned_cols=70 Identities=13% Similarity=0.008 Sum_probs=61.4
Q ss_pred HHHHHH-HHHHHhhhHhhcCcchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhccC
Q 024166 10 KLSAVL-MGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLAD 81 (271)
Q Consensus 10 ~~~~l~-~~~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~ 81 (271)
.++++. .++..+.++++++++.+...++....|++.+++++++ ++|+++..+++|.+++++|+.......
T Consensus 213 ~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~--lgE~~~~~~~iG~~lIl~~~~~~~~~~ 283 (293)
T PRK10532 213 AVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIF--LGETLTLIQWLALGAIIAASMGSTLTI 283 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHH--hCCCCcHHHHHHHHHHHHHHHHHHhcC
Confidence 344443 4567788999999999999999999999999999999 999999999999999999999886543
No 82
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.72 E-value=0.0087 Score=43.63 Aligned_cols=55 Identities=15% Similarity=0.054 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHH
Q 024166 170 ATFIGQVSVLSLIALFGAATT-AMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLI 224 (271)
Q Consensus 170 ~~~~~~~~~~~~i~~~~a~~~-si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lv 224 (271)
+-.+++.++...+|+.+...+ ++...+..+.+.+.|.++|||++|+.+++|+.++
T Consensus 38 ~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 38 GYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 445667788899999877764 6777789999999999999999999999999875
No 83
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=96.63 E-value=0.0011 Score=57.06 Aligned_cols=72 Identities=18% Similarity=0.422 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhccC
Q 024166 164 LVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPA 235 (271)
Q Consensus 164 l~l~~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~k 235 (271)
+++=++.++.|....++..++.+-..+.+++...|++++++++.+++|++|....+|..+.+.|+.+..+..
T Consensus 100 LiLRg~mG~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPp 171 (346)
T KOG4510|consen 100 LILRGFMGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPP 171 (346)
T ss_pred EEeehhhhhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCC
Confidence 344556667777888899999999999999999999999999999999999999999999999999887554
No 84
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=96.25 E-value=0.0053 Score=46.28 Aligned_cols=69 Identities=12% Similarity=0.088 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHHHHhhhHhhcCcchhHHHHH-hhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHH
Q 024166 7 TYVKLSAVLMGSHGLTKGSLAFLNYPAQLMF-KSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILF 77 (271)
Q Consensus 7 ~~~~~~~l~~~~~~l~~~al~~~~~~~~~i~-~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~ 77 (271)
+|...=.+|..+....++.+...+.+.+.-+ .+++-++|++.++++ .+|..+++.++|++++++|+.+.
T Consensus 43 ~y~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~l--ge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 43 KYIIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLL--GEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHh--cCcccchhHHHHHHHHHcCeeee
Confidence 4555555677778888999999998887755 699999999999999 67888889999999999998753
No 85
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.23 E-value=0.012 Score=42.82 Aligned_cols=57 Identities=12% Similarity=0.144 Sum_probs=34.0
Q ss_pred HHHHHHHHHhhhHhhcCcchhHHH-HHhhcchHHHHHHHHhhcccccccChhhHHHHHHH
Q 024166 12 SAVLMGSHGLTKGSLAFLNYPAQL-MFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLL 70 (271)
Q Consensus 12 ~~l~~~~~~l~~~al~~~~~~~~~-i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~ 70 (271)
-.++..+..+...+++++|.+.+. +......+.+.+.+.++ +||+++..|++++.++
T Consensus 36 ~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~--f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 36 VVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFF--FGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH--H--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHH--hCCCCCHHHHhheeeC
Confidence 346778889999999999997765 44557888999999999 9999999999998764
No 86
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.16 E-value=0.28 Score=38.92 Aligned_cols=138 Identities=18% Similarity=0.189 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcccHHHHHHHhhhchHHHHHHHHHHH
Q 024166 90 MIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAM 169 (271)
Q Consensus 90 ~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~ 169 (271)
+...++.+.+-++-.++...+.++.+..+ +|.--.+.+...+...+....++.... +.+......|+ |.+ +.++
T Consensus 4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~--spl~As~isf~vGt~~L~~l~l~~~~~-~~~a~~~~~pw-W~~--~GG~ 77 (150)
T COG3238 4 YLYLLFAILAGALLPLQAAINGRLARYLG--SPLLASLISFLVGTVLLLILLLIKQGH-PGLAAVASAPW-WAW--IGGL 77 (150)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHHHHHHHhcCC-CchhhccCCch-HHH--Hccc
Confidence 44555666666666777777766655433 234334445555555444333332221 11111222333 332 2334
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHhC----CCchhhhhhHHHHHHHHHHHHhc
Q 024166 170 ATFIGQVSVLSLIALFGAATTAMVTTARK-AVTLLLSYLIFT----KPLTEQHGTGLLLIAMGITLKLL 233 (271)
Q Consensus 170 ~~~~~~~~~~~~i~~~~a~~~si~~~l~~-v~~~lls~~~f~----e~~s~~~~~G~~lvl~Gv~l~~~ 233 (271)
.+++.-..-.....+.|+.++..+..... +.++++..+=+. .+++...++|+.+++.|+++...
T Consensus 78 lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~ 146 (150)
T COG3238 78 LGAIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARR 146 (150)
T ss_pred hhhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhcc
Confidence 44444344456677888887766665544 344444444333 58899999999999999655543
No 87
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=96.11 E-value=0.066 Score=46.67 Aligned_cols=79 Identities=20% Similarity=0.246 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHhCCCchhhhh----hHHHHHHHHHHHHhccC
Q 024166 161 YGVLVFEAMATFIGQVSVLSLIALFGAATTAMVT-TARKAVTLLLSYLIFTKPLTEQHG----TGLLLIAMGITLKLLPA 235 (271)
Q Consensus 161 ~~~l~l~~~~~~~~~~~~~~~i~~~~a~~~si~~-~l~~v~~~lls~~~f~e~~s~~~~----~G~~lvl~Gv~l~~~~k 235 (271)
+..-++.+++=.+++..++...++.|-+.+-.++ .+.-+.+.++++++|||.-+..++ +++++++.|+++..+.+
T Consensus 45 ~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~ 124 (269)
T PF06800_consen 45 FIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQD 124 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcccc
Confidence 3333445555568999999999999988766655 456667899999999996665554 37788999998888665
Q ss_pred CCCc
Q 024166 236 DDKP 239 (271)
Q Consensus 236 ~~~~ 239 (271)
++.+
T Consensus 125 ~~~~ 128 (269)
T PF06800_consen 125 KKSD 128 (269)
T ss_pred cccc
Confidence 4444
No 88
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=96.02 E-value=0.19 Score=45.04 Aligned_cols=141 Identities=11% Similarity=0.077 Sum_probs=85.5
Q ss_pred CchHHHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHH-HHHHhhHHHHHHH---HhhcccHHHHHHHhhhch-HHH
Q 024166 87 NFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLF-CSTVVGLPMLIPP---MLLTGELFKAWNSCSQHL-YVY 161 (271)
Q Consensus 87 ~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~ 161 (271)
+..+.|+++..++.++.|.+.+=.||+ |++ .+|..= ...+++-++ +|. .+..+++.+.. ...| ..+
T Consensus 3 ~~ii~Gii~h~iGg~~~~sfy~P~kkv-k~W----sWEs~Wlv~gi~swli-~P~~~a~l~ip~~~~i~---~~~~~~~l 73 (344)
T PF06379_consen 3 SAIILGIIFHAIGGFASGSFYVPFKKV-KGW----SWESYWLVQGIFSWLI-VPWLWALLAIPDFFSIY---SATPASTL 73 (344)
T ss_pred chHHHHHHHHHHHHHHhhhhccchhhc-CCc----cHHHHHHHHHHHHHHH-HHHHHHHHhCCcHHHHH---HhCChhHH
Confidence 356899999999999888887766654 333 244321 123333222 221 22334444433 2333 233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHhCC-------CchhhhhhHHHHHHHHHHHHhc
Q 024166 162 GVLVFEAMATFIGQVSVLSLIALFGAA-TTAMVTTARKAVTLLLSYLIFTK-------PLTEQHGTGLLLIAMGITLKLL 233 (271)
Q Consensus 162 ~~l~l~~~~~~~~~~~~~~~i~~~~a~-~~si~~~l~~v~~~lls~~~f~e-------~~s~~~~~G~~lvl~Gv~l~~~ 233 (271)
...++.++.=.++...+-..+|+.|-. ..++..-+..++..++--++.|+ +-....++|.++++.|+.+..+
T Consensus 74 ~~~~l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~ 153 (344)
T PF06379_consen 74 FWTFLFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGK 153 (344)
T ss_pred HHHHHHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhH
Confidence 333334444457778888999998865 46666666667777766665442 3345788999999999999987
Q ss_pred cCC
Q 024166 234 PAD 236 (271)
Q Consensus 234 ~k~ 236 (271)
.-.
T Consensus 154 AG~ 156 (344)
T PF06379_consen 154 AGS 156 (344)
T ss_pred HHH
Confidence 643
No 89
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=95.74 E-value=0.94 Score=40.77 Aligned_cols=63 Identities=22% Similarity=0.289 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhccC
Q 024166 173 IGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPA 235 (271)
Q Consensus 173 ~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~k 235 (271)
+-+.+++....+.+|.+..+...+|...+.+++.++++++++..||...++...|+.+.....
T Consensus 104 lqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~ 166 (345)
T KOG2234|consen 104 LQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPS 166 (345)
T ss_pred HhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccC
Confidence 444678899999999999999999999999999999999999999999999999999988443
No 90
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=95.25 E-value=0.041 Score=49.61 Aligned_cols=74 Identities=14% Similarity=0.216 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhccCCCCc
Q 024166 166 FEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKP 239 (271)
Q Consensus 166 l~~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~k~~~~ 239 (271)
..|..=+++++.++..++.++....++++...-+++..++.++-+|++|+...++.++.++|+++....+.+..
T Consensus 164 ~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~ 237 (416)
T KOG2765|consen 164 FFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQN 237 (416)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEecccccc
Confidence 33444467889999999999999999999999999999999999999999999999999999999988765543
No 91
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=95.16 E-value=0.083 Score=39.84 Aligned_cols=60 Identities=18% Similarity=0.222 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHH
Q 024166 172 FIGQVSVLSLIALFGAATTAMV-TTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLK 231 (271)
Q Consensus 172 ~~~~~~~~~~i~~~~a~~~si~-~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~ 231 (271)
..|...|+..+++.+-+.+..+ ..+.=+++.+.++++.+|..+...++|+++++.|+.+.
T Consensus 52 q~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 52 QSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred HHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 3556677788888887776666 47788899999988888888999999999999998753
No 92
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=94.42 E-value=0.0053 Score=52.21 Aligned_cols=206 Identities=13% Similarity=0.201 Sum_probs=129.3
Q ss_pred HHHHHHHhhhHhhcCcchhHHHHHhh-cchHHHHHHHHhhcccccccChhhH----HHHHHHHHHHHHHhccCCCC----
Q 024166 14 VLMGSHGLTKGSLAFLNYPAQLMFKS-TKVLPVMVMGAFIPGLRRKYPAHEY----VSALLLVVGLILFTLADAQT---- 84 (271)
Q Consensus 14 l~~~~~~l~~~al~~~~~~~~~i~~s-~~pi~v~~~~~ll~~l~e~~~~~~~----l~~~l~~~Gv~v~~~~~~~~---- 84 (271)
+...+...++-|.++..++.+.-+.+ ...+-+.+++.+. |||=.+..+. .+++++++|+.+-++.|.++
T Consensus 68 ~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~--f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk~~~ 145 (288)
T COG4975 68 FWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFV--FHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNKEEE 145 (288)
T ss_pred HhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEE--EeccCcchhHHHHHHHHHHHHHhheEeeeecccccccc
Confidence 34566778888888887765543333 3445566889999 8987776665 57888999999888876422
Q ss_pred CCCchHHHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHH-hhcccHHHHHHHhhhchHHHHH
Q 024166 85 SPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPM-LLTGELFKAWNSCSQHLYVYGV 163 (271)
Q Consensus 85 ~~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 163 (271)
++++.-.|+...+.|.+-|-.|.+..+. .+ .+.+.... ....++++..... ....+. . .+-..|..
T Consensus 146 ~~~n~kkgi~~L~iSt~GYv~yvvl~~~-f~----v~g~saiL-PqAiGMv~~ali~~~~~~~~--~-----~~K~t~~n 212 (288)
T COG4975 146 NPSNLKKGIVILLISTLGYVGYVVLFQL-FD----VDGLSAIL-PQAIGMVIGALILGFFKMEK--R-----FNKYTWLN 212 (288)
T ss_pred ChHhhhhheeeeeeeccceeeeEeeecc-cc----ccchhhhh-HHHHHHHHHHHHHhhccccc--c-----hHHHHHHH
Confidence 2235578888888888888777665532 22 12222222 2223333322211 111110 0 01112332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhh----hhHHHHHHHHHHHHhccC
Q 024166 164 LVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQH----GTGLLLIAMGITLKLLPA 235 (271)
Q Consensus 164 l~l~~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~----~~G~~lvl~Gv~l~~~~k 235 (271)
+.-+ +.=++|+..++..-++.|-.+.=.++-+.-+.+++-+.++++|+=|... ++|+++++.|..+....|
T Consensus 213 ii~G-~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~lg~~K 287 (288)
T COG4975 213 IIPG-LIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILLGIAK 287 (288)
T ss_pred HhhH-HHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhhheec
Confidence 3222 2225788888888888887776667777788999999999999887765 467788888877665544
No 93
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=93.80 E-value=0.14 Score=43.93 Aligned_cols=59 Identities=14% Similarity=0.014 Sum_probs=53.2
Q ss_pred HHhhhHhhcCcchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhc
Q 024166 19 HGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTL 79 (271)
Q Consensus 19 ~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~ 79 (271)
-.+...++..++-..+.++-|..|.+-++.++++ ++|+.+..||+++..++++..=...
T Consensus 224 YsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~--L~e~ls~~qwlaI~~ViaAsaG~~l 282 (292)
T COG5006 224 YSLEMIALRRLPARTFGTLLSLEPALAALSGLIF--LGETLTLIQWLAIAAVIAASAGSTL 282 (292)
T ss_pred hHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHH--hcCCCCHHHHHHHHHHHHHHhcccc
Confidence 3478899999999999999999999999999999 9999999999999999988774444
No 94
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=93.42 E-value=0.06 Score=45.46 Aligned_cols=65 Identities=11% Similarity=0.216 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHhhhHhhcCcchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHH
Q 024166 10 KLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLIL 76 (271)
Q Consensus 10 ~~~~l~~~~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v 76 (271)
.+.++......+-++.++|.+..+..+..+..++++.+++.++ ++++++..+++++.+.+.|+.+
T Consensus 157 ~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~--f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 157 IVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRL--FDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHH--hcCCccHHHHHHHHHHHeeeEe
Confidence 3344555666778888999999999999999999999999999 9999999999999999988653
No 95
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=93.04 E-value=0.34 Score=42.29 Aligned_cols=67 Identities=18% Similarity=0.263 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhcc
Q 024166 168 AMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLP 234 (271)
Q Consensus 168 ~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~ 234 (271)
..|-..|..+.+.++..++|+...+.-....+++-++|.-+++++++..||+|+..+..|+......
T Consensus 93 al~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~ 159 (372)
T KOG3912|consen 93 ALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSL 159 (372)
T ss_pred HHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeee
Confidence 3566778888899999999999999999999999999999999999999999999999999887655
No 96
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=92.56 E-value=0.16 Score=43.24 Aligned_cols=74 Identities=5% Similarity=0.086 Sum_probs=60.1
Q ss_pred hhhHHHHHHHHHHHHHhhhHhhcCcchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhcc
Q 024166 5 WKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLA 80 (271)
Q Consensus 5 ~~~~~~~~~l~~~~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~ 80 (271)
|+++..++++.+++.++.+.-..+-+.-+-.++..+.-+|+++.+.++ ++.+.+.+||++..+.+.|...-..+
T Consensus 241 ~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVll--f~npls~rQwlgtvlVF~aL~~D~~~ 314 (337)
T KOG1580|consen 241 FWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLL--FNNPLSGRQWLGTVLVFSALTADVVD 314 (337)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHH--hcCcCcHHHHHHHHHHHHHhhhHhhc
Confidence 567778888888888887777766555444556667888999999999 99999999999999999998876654
No 97
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=92.33 E-value=4.5 Score=37.26 Aligned_cols=7 Identities=14% Similarity=-0.111 Sum_probs=3.1
Q ss_pred ccccChh
Q 024166 56 RRKYPAH 62 (271)
Q Consensus 56 ~e~~~~~ 62 (271)
.||..++
T Consensus 14 e~~~~~~ 20 (378)
T PF05684_consen 14 EQKTKWG 20 (378)
T ss_pred hcchhhh
Confidence 3444444
No 98
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=92.23 E-value=0.082 Score=47.25 Aligned_cols=71 Identities=11% Similarity=0.034 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHhhhHhhcCcchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhccC
Q 024166 9 VKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLAD 81 (271)
Q Consensus 9 ~~~~~l~~~~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~ 81 (271)
...+++++..+...+..+..++.-++++..-.+-+.+++.++++ |+++.+..+.+|.+++++|++....-.
T Consensus 239 ~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~i--F~~pvt~~n~~G~~iai~Gv~~Y~~~k 309 (316)
T KOG1441|consen 239 LLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLI--FGNPVTFLNALGYAIAILGVFLYSRAK 309 (316)
T ss_pred HHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeee--ecCCCchhhHHHHHHHHHHHHHHHHHh
Confidence 34456777788999999999999999999988888899999999 899999999999999999999887543
No 99
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=91.93 E-value=1.9 Score=38.19 Aligned_cols=73 Identities=10% Similarity=0.196 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhccCCCC
Q 024166 166 FEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDK 238 (271)
Q Consensus 166 l~~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~k~~~ 238 (271)
..+++..++..+.+-.+|+++=-+..+....|-+-.++++.++++.+.++...+-..+|-.|+.++...+...
T Consensus 88 ~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~ 160 (327)
T KOG1581|consen 88 LISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSD 160 (327)
T ss_pred HHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCC
Confidence 3446667777888899999999999999999999999999999999999999999999999999998875444
No 100
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=91.63 E-value=0.31 Score=38.04 Aligned_cols=12 Identities=42% Similarity=0.667 Sum_probs=6.0
Q ss_pred hhHHHHHHHHHH
Q 024166 218 GTGLLLIAMGIT 229 (271)
Q Consensus 218 ~~G~~lvl~Gv~ 229 (271)
.+|..+.+.|+.
T Consensus 90 i~g~~~~~~G~~ 101 (136)
T PF08507_consen 90 IIGLLLFLVGVI 101 (136)
T ss_pred HHHHHHHHHHHH
Confidence 445555555544
No 101
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=90.90 E-value=0.076 Score=45.38 Aligned_cols=133 Identities=17% Similarity=0.141 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcccHHHHHHHhhhchHHHHHHHHHHHH
Q 024166 91 IGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAMA 170 (271)
Q Consensus 91 ~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~ 170 (271)
.+++.++.-++.||.......| .+. .|.++..-+.+-++.+.+...++..+. .++..+..-++.+..
T Consensus 2 ~~~liaL~P~l~WGsip~v~~k----~GG-~p~qQ~lGtT~GALifaiiv~~~~~p~--------~T~~~~iv~~isG~~ 68 (288)
T COG4975 2 MDLLIALLPALGWGSIPLVANK----FGG-KPYQQTLGTTLGALIFAIIVFLFVSPE--------LTLTIFIVGFISGAF 68 (288)
T ss_pred hhHHHHHHHHHHhcccceeeee----cCC-ChhHhhhhccHHHHHHHHHHheeecCc--------cchhhHHHHHHhhhH
Confidence 3566777778888887665433 211 245554443332222222211121110 122222222223333
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHhCCCchhhhh----hHHHHHHHHHHHHhccCC
Q 024166 171 TFIGQVSVLSLIALFGAATTAMVTT-ARKAVTLLLSYLIFTKPLTEQHG----TGLLLIAMGITLKLLPAD 236 (271)
Q Consensus 171 ~~~~~~~~~~~i~~~~a~~~si~~~-l~~v~~~lls~~~f~e~~s~~~~----~G~~lvl~Gv~l~~~~k~ 236 (271)
=.+|+...++.++..|.+.+..+++ ..-+-+.+++++.|||--++.+. +.+++++.|+++..+.++
T Consensus 69 Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~ 139 (288)
T COG4975 69 WSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDR 139 (288)
T ss_pred hhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeecc
Confidence 3478899999999999887666554 46677889999999997766554 345678888877766544
No 102
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=89.63 E-value=0.35 Score=40.09 Aligned_cols=63 Identities=11% Similarity=0.160 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhccCC
Q 024166 174 GQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPAD 236 (271)
Q Consensus 174 ~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~k~ 236 (271)
++..|...+++.+|+.++-+......+.-+++++++||++.....+..++.+.|+.+..+...
T Consensus 66 aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN 128 (290)
T KOG4314|consen 66 ANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADN 128 (290)
T ss_pred CCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccc
Confidence 456677889999999999999999999999999999999999999999999999987765543
No 103
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.53 E-value=0.35 Score=42.94 Aligned_cols=126 Identities=12% Similarity=0.130 Sum_probs=83.7
Q ss_pred chHHHHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcccHHHHHHHhhhchHHHHHHHHH
Q 024166 88 FSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFE 167 (271)
Q Consensus 88 ~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~ 167 (271)
.+..|.++...|.++-|....++||-.+|.... ..+ + -.|. ..+. .++.+|.=++..
T Consensus 18 d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~~-~~r---a--------------~~gg----~~yl-~~~~Ww~G~ltm 74 (335)
T KOG2922|consen 18 DNIIGLVLAISSSIFIGSSFILKKKGLKRAGAS-GLR---A--------------GEGG----YGYL-KEPLWWAGMLTM 74 (335)
T ss_pred CceeeeeehhhccEEEeeehhhhHHHHHHHhhh-ccc---c--------------cCCC----cchh-hhHHHHHHHHHH
Confidence 467899999999988888888887766553210 000 0 0111 0111 234445433333
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhccCCCCcc
Q 024166 168 AMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKPI 240 (271)
Q Consensus 168 ~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~k~~~~~ 240 (271)
. +|...-|..-.-.+++-.+.++.+.-+.+.+++..+++|++++...+|.++++.|.........++.+
T Consensus 75 ~----vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~ 143 (335)
T KOG2922|consen 75 I----VGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQE 143 (335)
T ss_pred H----HHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcccc
Confidence 2 33344444444577788888999999999999999999999999999999999998776655444433
No 104
>PF14851 FAM176: FAM176 family
Probab=86.63 E-value=0.75 Score=36.60 Aligned_cols=13 Identities=31% Similarity=0.580 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHh
Q 024166 220 GLLLIAMGITLKL 232 (271)
Q Consensus 220 G~~lvl~Gv~l~~ 232 (271)
|+++.++-+..-.
T Consensus 33 GLlLtLcllV~ri 45 (153)
T PF14851_consen 33 GLLLTLCLLVIRI 45 (153)
T ss_pred HHHHHHHHHHhhh
Confidence 4444444444333
No 105
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=86.19 E-value=3.3 Score=32.36 Aligned_cols=72 Identities=13% Similarity=0.216 Sum_probs=51.5
Q ss_pred CchhhHHHHHHHHHHHHHhhhHhhcCcchhHHHHHhhc-chHHHHHHHHh--hcccccccChhhHHHHHHHHHHHH
Q 024166 3 NPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKST-KVLPVMVMGAF--IPGLRRKYPAHEYVSALLLVVGLI 75 (271)
Q Consensus 3 ~~~~~~~~~~~l~~~~~~l~~~al~~~~~~~~~i~~s~-~pi~v~~~~~l--l~~l~e~~~~~~~l~~~l~~~Gv~ 75 (271)
.||+.|. =+++......+...+...+.++..+.+.-+ ..+..+++..+ +..-|++++.+|.+++.++++|+.
T Consensus 63 ~p~w~~l-GG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~ 137 (138)
T PF04657_consen 63 VPWWAYL-GGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVI 137 (138)
T ss_pred CChHHhc-cHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHh
Confidence 4677666 466777778888888888888666654443 44445556654 111478999999999999999986
No 106
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.93 E-value=12 Score=33.33 Aligned_cols=138 Identities=4% Similarity=-0.010 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHhhHhHHHHHHhhCCCCChhhHHHHHHHhhHHHHHHHHhhcccHHHHHHHhhhchHHHHHHHHHHHHH
Q 024166 92 GVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAMAT 171 (271)
Q Consensus 92 G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~ 171 (271)
....++..++++.+..+.+|.++..++-...+.++.++++.+++..... =..+- .+...+-...+..|..+-+..+.
T Consensus 13 ~l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~l-k~~~l-v~~~~l~~~~~kk~~P~~~lf~~- 89 (314)
T KOG1444|consen 13 PLLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVL-KRLGL-VNFRPLDLRTAKKWFPVSLLFVG- 89 (314)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH-HHhce-eecCCcChHHHHHHccHHHHHHH-
Confidence 3444555555555556677777666542223344557777665443221 01110 00000001122223211111111
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhcc
Q 024166 172 FIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLP 234 (271)
Q Consensus 172 ~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~ 234 (271)
....-...+++.+-....++..+.++++.+...++++..++...|.......+|...+...
T Consensus 90 --~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~ 150 (314)
T KOG1444|consen 90 --MLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFT 150 (314)
T ss_pred --HHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccc
Confidence 1112236678888888999999999999999999999999999999999999988776543
No 107
>PF03605 DcuA_DcuB: Anaerobic c4-dicarboxylate membrane transporter; InterPro: IPR004668 These proteins are members of the C4-Dicarboxylate Uptake (Dcu) family. Most proteins in this family are predicted to have 12 GES predicted transmembrane regions; however the one member whose membrane topology has been experimentally determined has 10 transmembrane regions, with both the N- and C-termini localized to the periplasm []. The DcuA and DcuB proteins are involved in the transport of aspartate, malate, fumarate and succinate in many species [, , ], and are thought to function as antiporters with any two of these substrates. Since DcuA is encoded in an operon with the gene for aspartase, and DcuB is encoded in an operon with the gene for fumarase, their physiological functions may be to catalyze aspartate:fumarate and fumarate:malate exchange during the anaerobic utilization of aspartate and fumarate, respectively []. The Escherichia coli DcuA and DcuB proteins have very different expression patterns []. DcuA is constitutively expressed; DcuB is strongly induced anaerobically by FNR and C4-dicarboxylates, while it is repressed by nitrate and subject to CRP-mediated catabolite repression.; GO: 0015556 C4-dicarboxylate transmembrane transporter activity, 0015740 C4-dicarboxylate transport, 0016021 integral to membrane
Probab=84.84 E-value=31 Score=31.49 Aligned_cols=34 Identities=24% Similarity=0.300 Sum_probs=18.5
Q ss_pred CchHHHHHHHHHHHHH--H---Hh--hHhHHHHHHhhCCCC
Q 024166 87 NFSMIGVIMISGALIM--D---SF--LGNLQEAIFTMNPET 120 (271)
Q Consensus 87 ~~~~~G~~l~l~s~~~--~---a~--~~v~~~~~~~~~~~~ 120 (271)
..+...+++..+++.. . |+ .--+.||++||+++.
T Consensus 43 PidVilII~aVi~a~a~lQaaGGlDylV~~Aek~LRk~Pk~ 83 (364)
T PF03605_consen 43 PIDVILIIMAVITAAAALQAAGGLDYLVQIAEKILRKNPKY 83 (364)
T ss_pred CHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhCCCc
Confidence 3455666665554332 1 11 112678999998764
No 108
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=83.53 E-value=2 Score=36.43 Aligned_cols=71 Identities=13% Similarity=0.092 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHhhhHhhcCcchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhcc
Q 024166 8 YVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLA 80 (271)
Q Consensus 8 ~~~~~~l~~~~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~ 80 (271)
.++-|+|.++-..++.+.+.-++.+++.+.-...-.+.++.+.++ |.++.++..+.++++.....++...+
T Consensus 227 m~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvf--fdap~nf~si~sillGflsg~iYava 297 (309)
T COG5070 227 MFISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVF--FDAPVNFLSIFSILLGFLSGAIYAVA 297 (309)
T ss_pred HHHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhh--cCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 344455666777888999999999999999888888888889888 88999988888888777766666554
No 109
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=81.97 E-value=29 Score=31.44 Aligned_cols=35 Identities=26% Similarity=0.155 Sum_probs=18.4
Q ss_pred HHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhcc
Q 024166 200 VTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLP 234 (271)
Q Consensus 200 ~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~ 234 (271)
...+.|+++--..+.........+++.-..+|...
T Consensus 213 ~la~~GY~yTA~~L~~~l~~sl~l~~~~~l~~~l~ 247 (340)
T PF12794_consen 213 VLALLGYYYTALQLLERLILSLYLLLGWLLVYQLI 247 (340)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455555555566666666666543
No 110
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=79.72 E-value=2.2 Score=31.63 Aligned_cols=68 Identities=15% Similarity=0.111 Sum_probs=49.7
Q ss_pred hHHHHHHHHHHHHHhhhHhhcCcchhHHH-HHhhcchHHHHHHHHhhcccccccC-hhhHHHHHHHHHHHHHH
Q 024166 7 TYVKLSAVLMGSHGLTKGSLAFLNYPAQL-MFKSTKVLPVMVMGAFIPGLRRKYP-AHEYVSALLLVVGLILF 77 (271)
Q Consensus 7 ~~~~~~~l~~~~~~l~~~al~~~~~~~~~-i~~s~~pi~v~~~~~ll~~l~e~~~-~~~~l~~~l~~~Gv~v~ 77 (271)
.|.+.=.++..+..+.++-|+..+.+.+. +..|++..|+++.+..+ +|+.. ++..++..++++|+.+.
T Consensus 54 ~Y~iPFllNqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~L---GE~~~g~~a~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 54 EYLIPFLLNQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKAL---GEETQGGLALLGTSLIVFGIWLC 123 (125)
T ss_pred HHHHHHHHHHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHh---ccccccceeehhhhHHhhhhhhe
Confidence 34444455666677778888887776555 55677888999999998 55554 66678999999998764
No 111
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=78.36 E-value=0.61 Score=40.25 Aligned_cols=84 Identities=8% Similarity=0.147 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhccCCCCcccccccCCC
Q 024166 169 MATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKPIKRTATSSF 248 (271)
Q Consensus 169 ~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~k~~~~~~~~~~~~~ 248 (271)
+.-+=++.+...+-+.++-+....+..-..+..++++|++++.+..+.++.|.++++.|+.+......+..++.....+.
T Consensus 86 ~~DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggsnp~ 165 (336)
T KOG2766|consen 86 FVDVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGSNPV 165 (336)
T ss_pred EEeecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccccccCCCCCc
Confidence 34455666777788888888888888888999999999999999999999999999999998887776665555444556
Q ss_pred ccce
Q 024166 249 KVNI 252 (271)
Q Consensus 249 ~~~~ 252 (271)
++|.
T Consensus 166 ~GD~ 169 (336)
T KOG2766|consen 166 KGDF 169 (336)
T ss_pred cCcE
Confidence 6553
No 112
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=77.85 E-value=3.3 Score=30.63 Aligned_cols=29 Identities=17% Similarity=0.106 Sum_probs=25.3
Q ss_pred HHHHHHHhCCCchhhhhhHHHHHHHHHHH
Q 024166 202 LLLSYLIFTKPLTEQHGTGLLLIAMGITL 230 (271)
Q Consensus 202 ~lls~~~f~e~~s~~~~~G~~lvl~Gv~l 230 (271)
..+++++++|++++.++.|..+++.+++.
T Consensus 77 ~~Fsv~~l~E~l~~n~l~af~~i~~av~f 105 (108)
T PF04342_consen 77 APFSVFYLGEPLKWNYLWAFLCILGAVYF 105 (108)
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHhhhe
Confidence 45778899999999999999999988754
No 113
>PRK10599 calcium/sodium:proton antiporter; Provisional
Probab=77.19 E-value=60 Score=29.81 Aligned_cols=18 Identities=11% Similarity=0.104 Sum_probs=9.2
Q ss_pred CCCchhhhhhHHHHHHHH
Q 024166 210 TKPLTEQHGTGLLLIAMG 227 (271)
Q Consensus 210 ~e~~s~~~~~G~~lvl~G 227 (271)
+...+..+.....++...
T Consensus 163 ~~~~s~~~s~~~avv~lv 180 (366)
T PRK10599 163 GANFSTGQALLVALISAA 180 (366)
T ss_pred CCccchhHHHHHHHHHHH
Confidence 445555565555554443
No 114
>PRK02237 hypothetical protein; Provisional
Probab=76.23 E-value=27 Score=26.00 Aligned_cols=46 Identities=13% Similarity=0.075 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhccC
Q 024166 190 TAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPA 235 (271)
Q Consensus 190 ~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~k 235 (271)
.+..+-+-.+.++++.+.+-|++++..-++|..+++.|+.+..+..
T Consensus 62 YAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~p 107 (109)
T PRK02237 62 YAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAP 107 (109)
T ss_pred HHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecC
Confidence 5667778888999999999999999999999999999998776554
No 115
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=75.57 E-value=70 Score=29.84 Aligned_cols=104 Identities=14% Similarity=0.185 Sum_probs=49.8
Q ss_pred CchhhHHHHHHHHHHHHHhhhHhhcCcchhHHHHHhhcchHHHHHHHHhhcccccccC-hhhHH--HHHHHHHHHHHHhc
Q 024166 3 NPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYP-AHEYV--SALLLVVGLILFTL 79 (271)
Q Consensus 3 ~~~~~~~~~~~l~~~~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~-~~~~l--~~~l~~~Gv~v~~~ 79 (271)
.|++-|..+........... .++-.+...+ ...++++.++.-.++|.+ +++|+ +.++++.|-...++
T Consensus 5 iplp~f~~~~~iv~~~~~~~-----~lp~~m~g~~-----a~~~v~G~~l~~IG~riPi~k~yiGGg~il~~f~ps~Lv~ 74 (414)
T PF03390_consen 5 IPLPLFLILAAIVLAAIYTG-----KLPTDMIGGF-----AVMMVLGFLLGEIGDRIPILKDYIGGGAILCIFVPSALVY 74 (414)
T ss_pred ecHHHHHHHHHHHHHHHHhC-----cCCcchHHHH-----HHHHHHHHHHHHHHhhChhhhccCChHHHHHHHHHHHHHH
Confidence 46777777776666555542 2332222211 112355555432567777 44434 45566666555544
Q ss_pred cCCCCC------CCc-hHHHHHHHHHHHHHHHhhHhHHHHHHhh
Q 024166 80 ADAQTS------PNF-SMIGVIMISGALIMDSFLGNLQEAIFTM 116 (271)
Q Consensus 80 ~~~~~~------~~~-~~~G~~l~l~s~~~~a~~~v~~~~~~~~ 116 (271)
..--.. +++ .-.|++-..++++..|...-..||++.|
T Consensus 75 ~~~ip~~~~~~v~~fm~~~~Fl~ffIa~LI~GSILgm~RklLik 118 (414)
T PF03390_consen 75 FGLIPESVVEAVTNFMKGSNFLYFFIAALIVGSILGMNRKLLIK 118 (414)
T ss_pred cCCCCHHHHHHHHHHhccCChHHHHHHHHHHhhhhhcCHHHHHH
Confidence 332110 000 1125555555555555544556666655
No 116
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.57 E-value=16 Score=28.98 Aligned_cols=75 Identities=12% Similarity=0.161 Sum_probs=44.9
Q ss_pred CchhhHHHHHHHHHHHHHhhhHhhcCcchhHHH-HHhhcchHHHHHHHHhh--cccccccChhhHHHHHHHHHHHHHHh
Q 024166 3 NPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQL-MFKSTKVLPVMVMGAFI--PGLRRKYPAHEYVSALLLVVGLILFT 78 (271)
Q Consensus 3 ~~~~~~~~~~~l~~~~~~l~~~al~~~~~~~~~-i~~s~~pi~v~~~~~ll--~~l~e~~~~~~~l~~~l~~~Gv~v~~ 78 (271)
.||+.++. |.+.......+......+..++.+ +.-+-..+.-+++..+= +--++++++.+++++++.++|+.+..
T Consensus 68 ~pwW~~~G-G~lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~ 145 (150)
T COG3238 68 APWWAWIG-GLLGAIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLAR 145 (150)
T ss_pred CchHHHHc-cchhhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhc
Confidence 46776554 455555555555566666654443 33334444444544441 11358889999999999999966554
No 117
>PF15345 TMEM51: Transmembrane protein 51
Probab=74.45 E-value=1.8 Score=36.62 Aligned_cols=26 Identities=19% Similarity=0.382 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHHHHhccCCCCccccc
Q 024166 218 GTGLLLIAMGITLKLLPADDKPIKRT 243 (271)
Q Consensus 218 ~~G~~lvl~Gv~l~~~~k~~~~~~~~ 243 (271)
..|++|.+..+++..+.|++++++..
T Consensus 66 G~Gv~LLLLSICL~IR~KRr~rq~~e 91 (233)
T PF15345_consen 66 GSGVALLLLSICLSIRDKRRRRQGEE 91 (233)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 35888888999888887776666544
No 118
>PF14851 FAM176: FAM176 family
Probab=72.99 E-value=15 Score=29.24 Aligned_cols=20 Identities=0% Similarity=0.132 Sum_probs=10.9
Q ss_pred HHHhhhchHHHHHHHHHHHH
Q 024166 151 WNSCSQHLYVYGVLVFEAMA 170 (271)
Q Consensus 151 ~~~~~~~~~~~~~l~l~~~~ 170 (271)
..++..+|+-.++.++.++|
T Consensus 12 ya~I~~~PE~~aLYFv~gVC 31 (153)
T PF14851_consen 12 YAHIRDNPERFALYFVSGVC 31 (153)
T ss_pred HHHHHhChHHHHHHHHHHHH
Confidence 34455677655555554555
No 119
>PRK02237 hypothetical protein; Provisional
Probab=72.51 E-value=7.1 Score=29.07 Aligned_cols=36 Identities=11% Similarity=0.161 Sum_probs=30.3
Q ss_pred HHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhccC
Q 024166 44 PVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLAD 81 (271)
Q Consensus 44 ~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~ 81 (271)
..++..+++ -++|+++.++++..++++|+.++.+.+
T Consensus 72 ~Sl~W~w~v--dg~~Pd~~D~iGa~v~L~G~~iI~~~p 107 (109)
T PRK02237 72 GSLLWLWVV--DGVRPDRWDWIGAAICLVGMAVIMYAP 107 (109)
T ss_pred HHHHHHHHh--cCcCCChhHHHhHHHHHHhHHHheecC
Confidence 345778888 789999999999999999999886654
No 120
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=72.10 E-value=55 Score=30.48 Aligned_cols=52 Identities=12% Similarity=0.082 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCchh--hhhhHHHHHHHHHHHHhccCCCCccc
Q 024166 190 TAMVTTARKAVTLLLSYLIFTKPLTE--QHGTGLLLIAMGITLKLLPADDKPIK 241 (271)
Q Consensus 190 ~si~~~l~~v~~~lls~~~f~e~~s~--~~~~G~~lvl~Gv~l~~~~k~~~~~~ 241 (271)
.++.+.+..+..++--..+=+++-+. ...++.++.+..+.+|...++++--|
T Consensus 157 ~a~aG~l~Sl~~i~tka~~~~~~~sA~~yF~~s~~~~llC~i~y~~l~~lpf~~ 210 (406)
T KOG1479|consen 157 QALAGTLTSLLRILTKAAFSDSRTSALIYFITSTVILLLCFVLYLVLPKLPFVR 210 (406)
T ss_pred chhHhHHHHHHHHHHHHhcCCCCceeehhHHHHHHHHHHHHHHHHHhhcchHHH
Confidence 35556666666666666666665544 44556677888888888555544333
No 121
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=70.91 E-value=6.7 Score=29.13 Aligned_cols=38 Identities=13% Similarity=0.336 Sum_probs=31.5
Q ss_pred hHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhccC
Q 024166 42 VLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLAD 81 (271)
Q Consensus 42 pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~ 81 (271)
.+..++..+.+ -|+|+++.++++..++++|+.++.+.+
T Consensus 68 I~~Sl~W~w~v--dg~~Pd~~D~iGa~i~L~G~~iI~~~P 105 (107)
T PF02694_consen 68 IVASLLWGWLV--DGVRPDRWDWIGAAICLVGVAIILFAP 105 (107)
T ss_pred HHHHHHHHhhh--cCcCCChHHHHhHHHHHHhHHheEecC
Confidence 33445788888 789999999999999999999887654
No 122
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=70.23 E-value=39 Score=32.01 Aligned_cols=24 Identities=8% Similarity=0.095 Sum_probs=20.1
Q ss_pred chhhhhhHHHHHHHHHHHHhccCC
Q 024166 213 LTEQHGTGLLLIAMGITLKLLPAD 236 (271)
Q Consensus 213 ~s~~~~~G~~lvl~Gv~l~~~~k~ 236 (271)
++..||+++.+++.|+++..+.++
T Consensus 254 l~~~Q~lSl~~il~gl~~~~~~~~ 277 (460)
T PRK13108 254 IRINSFTSTFVFIGAVVYIILAPK 277 (460)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhc
Confidence 799999999999999887765443
No 123
>PF15325 MRI: Modulator of retrovirus infection
Probab=70.18 E-value=4.9 Score=29.20 Aligned_cols=49 Identities=22% Similarity=0.190 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhccCCCCcccccccCCCccceec--------cccccchhhhhhhcCC
Q 024166 222 LLIAMGITLKLLPADDKPIKRTATSSFKVNIRK--------LSFSEREEADEEKRAP 270 (271)
Q Consensus 222 ~lvl~Gv~l~~~~k~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~ 270 (271)
+=|-.|+++-.+...++-+..+..-.+|..... .+++.+||||+++..|
T Consensus 11 VDVALGILIE~rkqEkp~E~~~l~gadkpe~sp~~s~sp~tssgs~Se~Ed~g~d~~ 67 (106)
T PF15325_consen 11 VDVALGILIEGRKQEKPWEQPALAGADKPELSPPCSASPHTSSGSSSEEEDSGNDAP 67 (106)
T ss_pred HHHHHHHhhcccccccccccccccccCCcccCCCCCCCCCCCCCCccccccccccCC
Confidence 335667777754444333333222233322111 2477778888777654
No 124
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=69.72 E-value=1.6 Score=38.56 Aligned_cols=61 Identities=18% Similarity=0.226 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHhCCCch--hhhhhHHHHHHHHHHHHhc
Q 024166 172 FIGQVSVLSLIALFGAATTAMVTT-ARKAVTLLLSYLIFTKPLT--EQHGTGLLLIAMGITLKLL 233 (271)
Q Consensus 172 ~~~~~~~~~~i~~~~a~~~si~~~-l~~v~~~lls~~~f~e~~s--~~~~~G~~lvl~Gv~l~~~ 233 (271)
-+++++..+.+...|-..+-+++. +.-++.+.+.+ +.+++.. ..-+.|.++++.++.+...
T Consensus 83 nlgNillq~aia~aGmSVafpvg~glalVlGv~~NY-fld~~~n~a~iLF~GV~cf~iAI~lga~ 146 (336)
T PF07168_consen 83 NLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNY-FLDPKINRAEILFPGVACFLIAIILGAA 146 (336)
T ss_pred hhHHHHHHHHHHHhcceeeeeeecceEEEEeeeeee-eccCCCCCceEEEccHHHHHHHHHHHHH
Confidence 366777777776666544333221 11122223332 3345554 2455688887777776543
No 125
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=69.33 E-value=2.5 Score=35.82 Aligned_cols=11 Identities=18% Similarity=-0.182 Sum_probs=4.3
Q ss_pred HHhccCCCCcc
Q 024166 230 LKLLPADDKPI 240 (271)
Q Consensus 230 l~~~~k~~~~~ 240 (271)
.+.+.|.++++
T Consensus 176 a~yYfK~~K~K 186 (218)
T PF14283_consen 176 AYYYFKFYKPK 186 (218)
T ss_pred eEEEEEEeccc
Confidence 33334444333
No 126
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=69.04 E-value=1.7 Score=37.96 Aligned_cols=64 Identities=19% Similarity=0.152 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHH----HHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhcc
Q 024166 171 TFIGQVSVLSLIALFGAATTAMVTTARK----AVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLP 234 (271)
Q Consensus 171 ~~~~~~~~~~~i~~~~a~~~si~~~l~~----v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~ 234 (271)
-+++-.+|.+.++++||+.-.++..+-. ++-.++++++-..-+|...=+=-.+.+.++.++.+.
T Consensus 118 LaL~vW~Ym~lLr~~GAs~WtiLaFcLAF~LaivlLIIAv~L~qaWfT~L~dL~WL~LFlaiLIWlY~ 185 (381)
T PF05297_consen 118 LALGVWFYMWLLRELGASFWTILAFCLAFLLAIVLLIIAVLLHQAWFTILVDLYWLLLFLAILIWLYV 185 (381)
T ss_dssp --------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455566677899999998877665422 222233333333333443322334455565555443
No 127
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=68.89 E-value=14 Score=27.46 Aligned_cols=46 Identities=15% Similarity=0.138 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhccC
Q 024166 190 TAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPA 235 (271)
Q Consensus 190 ~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~k 235 (271)
.+..+-+-.+.++++++.+-+++++..-++|..+++.|+.+..+..
T Consensus 60 YAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~P 105 (107)
T PF02694_consen 60 YAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAP 105 (107)
T ss_pred HHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecC
Confidence 4556667778899999999999999999999999999998876654
No 128
>PRK01637 hypothetical protein; Reviewed
Probab=68.11 E-value=16 Score=32.18 Aligned_cols=16 Identities=19% Similarity=0.140 Sum_probs=8.3
Q ss_pred HHHhhcchHHHHHHHH
Q 024166 35 LMFKSTKVLPVMVMGA 50 (271)
Q Consensus 35 ~i~~s~~pi~v~~~~~ 50 (271)
..+-|.-|+..++++.
T Consensus 34 y~lLSlfP~l~~l~~l 49 (286)
T PRK01637 34 VTLLSLVPLVAVVFSL 49 (286)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555665555444
No 129
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.84 E-value=16 Score=26.69 Aligned_cols=32 Identities=19% Similarity=0.170 Sum_probs=27.7
Q ss_pred HHHHHHHHhCCCchhhhhhHHHHHHHHHHHHh
Q 024166 201 TLLLSYLIFTKPLTEQHGTGLLLIAMGITLKL 232 (271)
Q Consensus 201 ~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~ 232 (271)
-..+|.++++|++.+.++.|..++..|++...
T Consensus 83 Fv~Fsvfyl~epl~~~~l~a~~~i~gav~fiF 114 (116)
T COG3169 83 FVPFSVFYLKEPLRWNYLWAFLLILGAVYFIF 114 (116)
T ss_pred HHHHHHHHHcCcchHHHHHHHHHHHHHHHHhc
Confidence 35688999999999999999999999987543
No 130
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=65.77 E-value=33 Score=30.16 Aligned_cols=49 Identities=12% Similarity=0.252 Sum_probs=38.3
Q ss_pred hHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhccCC
Q 024166 32 PAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADA 82 (271)
Q Consensus 32 ~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~~ 82 (271)
..+..+....-..|+++|+++ |.++++..-.-+.++++.|+.+-.+.+.
T Consensus 287 ~~aatvTTaRKavTi~lSfll--FsKPfT~qy~~~gllv~lgI~Ln~ysk~ 335 (367)
T KOG1582|consen 287 LIAATVTTARKAVTILLSFLL--FSKPFTEQYVWSGLLVVLGIYLNMYSKR 335 (367)
T ss_pred hHHHHHHHhHhHHHHHHHHHH--HcCchHHHHhhhhHHHHHHHHhhcccCC
Confidence 333444444556688999999 9999998888899999999998887663
No 131
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.17 E-value=55 Score=24.02 Aligned_cols=30 Identities=13% Similarity=0.168 Sum_probs=20.8
Q ss_pred HHHHhhcccccccChhhHHHHHHHHHHHHHHh
Q 024166 47 VMGAFIPGLRRKYPAHEYVSALLLVVGLILFT 78 (271)
Q Consensus 47 ~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~ 78 (271)
.++.+. +||++++..+.+.+++..|+.++.
T Consensus 85 ~Fsvfy--l~epl~~~~l~a~~~i~gav~fiF 114 (116)
T COG3169 85 PFSVFY--LKEPLRWNYLWAFLLILGAVYFIF 114 (116)
T ss_pred HHHHHH--HcCcchHHHHHHHHHHHHHHHHhc
Confidence 466666 778877777777777776666543
No 132
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=64.00 E-value=1.4e+02 Score=28.73 Aligned_cols=85 Identities=7% Similarity=-0.123 Sum_probs=40.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhccCCCCcccccccCCCccceecccccc
Q 024166 180 SLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKPIKRTATSSFKVNIRKLSFSE 259 (271)
Q Consensus 180 ~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 259 (271)
....|.-+....+.....|+-+.++|.+.-.-.++....++.+..+.+..+....+-++.++ ++..+...++.+.-+.
T Consensus 339 ~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~~~~l~~~~~--~d~~~~~~~~~p~~~~ 416 (524)
T PF05977_consen 339 WVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIALRFPLRQGEE--LDLDPSEHWPEPELAL 416 (524)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcCccccc--CCCCccccCCCCCcCC
Confidence 33445555555566666777777777765444443333333333333333433333332222 1222222245554455
Q ss_pred chhhhhh
Q 024166 260 REEADEE 266 (271)
Q Consensus 260 ~~~~~~~ 266 (271)
|-+.|+|
T Consensus 417 ~~~~~~g 423 (524)
T PF05977_consen 417 DVEPDSG 423 (524)
T ss_pred CCCCCCC
Confidence 5555554
No 133
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=63.59 E-value=6.9 Score=25.94 Aligned_cols=25 Identities=8% Similarity=-0.017 Sum_probs=16.9
Q ss_pred hhHHHHHHHHHHHHhccCCCCcccc
Q 024166 218 GTGLLLIAMGITLKLLPADDKPIKR 242 (271)
Q Consensus 218 ~~G~~lvl~Gv~l~~~~k~~~~~~~ 242 (271)
.+=+.+++.|++.+.+++.+|++..
T Consensus 15 t~~~~l~fiavi~~ayr~~~K~~~d 39 (60)
T COG4736 15 TIAFTLFFIAVIYFAYRPGKKGEFD 39 (60)
T ss_pred HHHHHHHHHHHHHHHhcccchhhHH
Confidence 3445677888888887766665553
No 134
>PF13038 DUF3899: Domain of unknown function (DUF3899)
Probab=63.05 E-value=5.1 Score=28.79 Aligned_cols=21 Identities=24% Similarity=0.284 Sum_probs=14.4
Q ss_pred hhhhhhHHHHHHHHHHHHhcc
Q 024166 214 TEQHGTGLLLIAMGITLKLLP 234 (271)
Q Consensus 214 s~~~~~G~~lvl~Gv~l~~~~ 234 (271)
+....+|.++.+.|..++...
T Consensus 3 N~~Fl~~l~lliig~~~~v~~ 23 (92)
T PF13038_consen 3 NILFLVGLILLIIGGFLFVFQ 23 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHHh
Confidence 345577888888887776544
No 135
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=62.89 E-value=12 Score=34.90 Aligned_cols=68 Identities=18% Similarity=0.117 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCC-CchhhhhhHHHHHHHHHHHHhccCCCCcccccccCCCccceeccccccchh
Q 024166 188 ATTAMVTTARKAVTLLLSYLIFTK-PLTEQHGTGLLLIAMGITLKLLPADDKPIKRTATSSFKVNIRKLSFSEREE 262 (271)
Q Consensus 188 ~~~si~~~l~~v~~~lls~~~f~e-~~s~~~~~G~~lvl~Gv~l~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (271)
+..++-+.+-|+++.+ +++.++. -......-|++-++.|++.+...|.+++ +.+-++.|+-.+|+.|+
T Consensus 160 ~shNiGGal~~~~~~l-a~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pq------s~GLP~ie~~~~d~~e~ 228 (448)
T COG2271 160 TSHNIGGALAPLVALL-AFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQ------SEGLPPIEEYRGDPLEI 228 (448)
T ss_pred hhhhcccchHHHHHHH-HHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCcc------ccCCCCHHHhhcCchhh
Confidence 3455566666666655 6666653 3344455677778888888876654333 34445556655555554
No 136
>PF15471 TMEM171: Transmembrane protein family 171
Probab=62.22 E-value=6.4 Score=34.13 Aligned_cols=27 Identities=15% Similarity=0.223 Sum_probs=21.0
Q ss_pred hhhhhHHHHHHHHHHHHhccCCCCccc
Q 024166 215 EQHGTGLLLIAMGITLKLLPADDKPIK 241 (271)
Q Consensus 215 ~~~~~G~~lvl~Gv~l~~~~k~~~~~~ 241 (271)
..|+.|-.+++.|...+.....||+++
T Consensus 161 slQImGPlIVl~GLCFFVVAHvKKr~n 187 (319)
T PF15471_consen 161 SLQIMGPLIVLVGLCFFVVAHVKKRNN 187 (319)
T ss_pred ehhhhhhHHHHHhhhhhheeeeeeccC
Confidence 468899999999998888776555444
No 137
>PRK06638 NADH:ubiquinone oxidoreductase subunit J; Provisional
Probab=62.06 E-value=91 Score=25.86 Aligned_cols=23 Identities=26% Similarity=0.353 Sum_probs=15.7
Q ss_pred HHHHHHhCCCchhhhhhHHHHHH
Q 024166 203 LLSYLIFTKPLTEQHGTGLLLIA 225 (271)
Q Consensus 203 lls~~~f~e~~s~~~~~G~~lvl 225 (271)
.+|..+|++..=+.-.+|..+.+
T Consensus 134 ~iG~~L~t~y~l~fe~~silLLv 156 (198)
T PRK06638 134 AIGILLFTDYLLPFELASVLLLV 156 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666777777777788887643
No 138
>PF10225 DUF2215: Uncharacterized conserved protein (DUF2215); InterPro: IPR024233 This entry represents a domain that is found in a number of different proteins, including a family of transmembrane proteins.
Probab=61.42 E-value=1.1e+02 Score=26.48 Aligned_cols=40 Identities=15% Similarity=0.008 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchh
Q 024166 176 VSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTE 215 (271)
Q Consensus 176 ~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~ 215 (271)
+..+.+-++-++........++-.+.++-..+++.-.-..
T Consensus 110 vsf~vcy~~gp~~~~rs~~~v~W~Lqligl~lI~~ss~~~ 149 (249)
T PF10225_consen 110 VSFAVCYRYGPPVDPRSRNFVKWALQLIGLVLIYFSSQDP 149 (249)
T ss_pred HHHHhhcccCCCccHhHHHHHHHHHHHHHHHHHHHHcCcH
Confidence 3334444455555666667777777777666666553333
No 139
>PF15102 TMEM154: TMEM154 protein family
Probab=58.81 E-value=9.7 Score=29.98 Aligned_cols=29 Identities=10% Similarity=0.090 Sum_probs=16.9
Q ss_pred hhHHHHHHHHHHHHhccCCCCcccccccC
Q 024166 218 GTGLLLIAMGITLKLLPADDKPIKRTATS 246 (271)
Q Consensus 218 ~~G~~lvl~Gv~l~~~~k~~~~~~~~~~~ 246 (271)
+++.+|++..+++..+.||++.++++.+.
T Consensus 66 VLLvlLLl~vV~lv~~~kRkr~K~~~ss~ 94 (146)
T PF15102_consen 66 VLLVLLLLSVVCLVIYYKRKRTKQEPSSQ 94 (146)
T ss_pred HHHHHHHHHHHHheeEEeecccCCCCccc
Confidence 45556666667777766665555544333
No 140
>PF10587 EF-1_beta_acid: Eukaryotic elongation factor 1 beta central acidic region; InterPro: IPR018940 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF1B (also known as EF-Ts or EF-1beta/gamma/delta) is a nucleotide exchange factor that is required to regenerate EF1A from its inactive form (EF1A-GDP) to its active form (EF1A-GTP). EF1A is then ready to interact with a new aminoacyl-tRNA to begin the cycle again. EF1B is more complex in eukaryotes than in bacteria, and can consist of three subunits: EF1B-alpha (or EF-1beta), EF1B-gamma (or EF-1gamma) and EF1B-beta (or EF-1delta) []. This region is found in the centre of the beta subunits of Elongation factor-1. More information about these proteins can be found at Protein of the Month: Elongation Factors [].
Probab=57.83 E-value=4.1 Score=22.50 Aligned_cols=11 Identities=55% Similarity=0.549 Sum_probs=6.1
Q ss_pred cccchhhhhhh
Q 024166 257 FSEREEADEEK 267 (271)
Q Consensus 257 ~~~~~~~~~~~ 267 (271)
+++|||||+|.
T Consensus 3 GSddEeed~ea 13 (28)
T PF10587_consen 3 GSDDEEEDEEA 13 (28)
T ss_pred CCccccccHHH
Confidence 34555566654
No 141
>PRK11469 hypothetical protein; Provisional
Probab=56.31 E-value=20 Score=29.56 Aligned_cols=45 Identities=18% Similarity=0.084 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHH-HHHHHHHH
Q 024166 187 AATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLL-IAMGITLK 231 (271)
Q Consensus 187 a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~l-vl~Gv~l~ 231 (271)
+...+.++.+-|..+...+..+-+-.....+|+|..+ ++.|..+.
T Consensus 40 ~l~~g~~q~~m~~~g~~~G~~l~~~i~~~~~~i~~~lL~~lG~~mi 85 (188)
T PRK11469 40 GLIFGAVETLTPLIGWGMGMLASRFVLEWNHWIAFVLLIFLGGRMI 85 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666777777777766554444567777754 55565433
No 142
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=55.92 E-value=1e+02 Score=28.89 Aligned_cols=15 Identities=27% Similarity=0.255 Sum_probs=7.5
Q ss_pred hhHHHHHHHHHHHHh
Q 024166 218 GTGLLLIAMGITLKL 232 (271)
Q Consensus 218 ~~G~~lvl~Gv~l~~ 232 (271)
.++.++.+..+..|.
T Consensus 179 ~~a~~v~l~~i~~~~ 193 (437)
T TIGR00939 179 GTPCVVQLICIVCYL 193 (437)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344455555555553
No 143
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=54.46 E-value=11 Score=26.90 Aligned_cols=30 Identities=20% Similarity=0.207 Sum_probs=23.6
Q ss_pred CchhhhhhHHHHHHHHHHHHhccCCCCccc
Q 024166 212 PLTEQHGTGLLLIAMGITLKLLPADDKPIK 241 (271)
Q Consensus 212 ~~s~~~~~G~~lvl~Gv~l~~~~k~~~~~~ 241 (271)
.+++..++|+++++.|..+|..++.++.-.
T Consensus 4 ~~~~~~iLgi~l~~~~~~Ly~lr~~~Pev~ 33 (84)
T PF07444_consen 4 GFGPSYILGIILILGGLALYFLRFFRPEVS 33 (84)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHCcchh
Confidence 568999999999999999998655444433
No 144
>COG3247 HdeD Uncharacterized conserved protein [Function unknown]
Probab=53.33 E-value=1.3e+02 Score=24.83 Aligned_cols=45 Identities=16% Similarity=0.333 Sum_probs=28.6
Q ss_pred cccccChhhHHHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHH
Q 024166 55 LRRKYPAHEYVSALLLVVGLILFTLADAQTSPNFSMIGVIMISGA 99 (271)
Q Consensus 55 l~e~~~~~~~l~~~l~~~Gv~v~~~~~~~~~~~~~~~G~~l~l~s 99 (271)
+|++.......++++.++|+..+...-.+...-....|..+.+..
T Consensus 15 l~~~w~~~l~~Gv~lii~Gl~~l~~P~~s~~~l~~~vG~~lli~G 59 (185)
T COG3247 15 LKKPWWWVLLLGVLLIILGLLALFNPAISTVALVYVVGILLLISG 59 (185)
T ss_pred hcCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 466667777789999999999886432211112346666665543
No 145
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=53.04 E-value=3.2 Score=29.24 Aligned_cols=11 Identities=36% Similarity=0.389 Sum_probs=5.4
Q ss_pred ccccchhhhhh
Q 024166 256 SFSEREEADEE 266 (271)
Q Consensus 256 ~~~~~~~~~~~ 266 (271)
||+|+|.++||
T Consensus 53 SGnES~Gd~Ee 63 (81)
T PF00558_consen 53 SGNESDGDEEE 63 (81)
T ss_dssp CHCTTTTCCHH
T ss_pred CCCCCCCcHHH
Confidence 45555544444
No 146
>PF13980 UPF0370: Uncharacterised protein family (UPF0370)
Probab=52.73 E-value=7.5 Score=25.44 Aligned_cols=18 Identities=22% Similarity=0.335 Sum_probs=13.9
Q ss_pred hhhhHHHHHHHHHHHHhcc
Q 024166 216 QHGTGLLLIAMGITLKLLP 234 (271)
Q Consensus 216 ~~~~G~~lvl~Gv~l~~~~ 234 (271)
+.|+ +.+++.|+++....
T Consensus 7 YWWi-iLl~lvG~i~n~iK 24 (63)
T PF13980_consen 7 YWWI-ILLILVGMIINGIK 24 (63)
T ss_pred HHHH-HHHHHHHHHHHHHH
Confidence 4566 88899999988754
No 147
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=52.29 E-value=14 Score=32.55 Aligned_cols=41 Identities=17% Similarity=0.375 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhccCCC
Q 024166 197 RKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADD 237 (271)
Q Consensus 197 ~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~k~~ 237 (271)
.++.++++++++.|.+.|..|..+.+++-.|+.+....+.+
T Consensus 101 sll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~ 141 (330)
T KOG1583|consen 101 SLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSK 141 (330)
T ss_pred cHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCc
Confidence 45678899999999999999999999999999999877543
No 148
>COG2851 CitM H+/citrate symporter [Energy production and conversion]
Probab=51.74 E-value=8.8 Score=35.13 Aligned_cols=25 Identities=16% Similarity=0.177 Sum_probs=16.8
Q ss_pred HHHHHhhcccccccChhhHHHHHHHHH
Q 024166 46 MVMGAFIPGLRRKYPAHEYVSALLLVV 72 (271)
Q Consensus 46 ~~~~~ll~~l~e~~~~~~~l~~~l~~~ 72 (271)
.++-+++ +++|.|...-+-+..++.
T Consensus 11 ~~fm~Li--m~kk~sp~iAli~vPiv~ 35 (433)
T COG2851 11 IVFMWLI--MTKKLSPIIALILVPIVF 35 (433)
T ss_pred HHHHHHH--HhcccchHHHHHHHHHHH
Confidence 4566677 788888877665555544
No 149
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=51.35 E-value=15 Score=24.95 Aligned_cols=33 Identities=6% Similarity=0.091 Sum_probs=17.0
Q ss_pred CCchhhhhh--H----HHHHHHHHHHHhccCCCCccccc
Q 024166 211 KPLTEQHGT--G----LLLIAMGITLKLLPADDKPIKRT 243 (271)
Q Consensus 211 e~~s~~~~~--G----~~lvl~Gv~l~~~~k~~~~~~~~ 243 (271)
+.+|+.+|. | +++.+.+.+.+.+.|.++.++++
T Consensus 26 d~~sp~qW~aIGvi~gi~~~~lt~ltN~YFK~k~drr~~ 64 (68)
T PF04971_consen 26 DQFSPSQWAAIGVIGGIFFGLLTYLTNLYFKIKEDRRKA 64 (68)
T ss_pred hccCcccchhHHHHHHHHHHHHHHHhHhhhhhhHhhhHh
Confidence 455554444 3 33344555555566666655544
No 150
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=51.13 E-value=16 Score=23.02 Aligned_cols=25 Identities=16% Similarity=0.066 Sum_probs=18.1
Q ss_pred hhHHHHHHHHHHHHhccCCCCcccc
Q 024166 218 GTGLLLIAMGITLKLLPADDKPIKR 242 (271)
Q Consensus 218 ~~G~~lvl~Gv~l~~~~k~~~~~~~ 242 (271)
++-+++++.|++++.++++++++-+
T Consensus 16 l~~~~~~Figiv~wa~~p~~k~~f~ 40 (48)
T cd01324 16 LLYLALFFLGVVVWAFRPGRKKAFD 40 (48)
T ss_pred HHHHHHHHHHHHHHHhCCCcchhHH
Confidence 3345788899999998876666543
No 151
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=50.87 E-value=52 Score=28.37 Aligned_cols=44 Identities=18% Similarity=0.095 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCc-hhhhhhHHHHHHHHHHHHhcc
Q 024166 190 TAMVTTARKAVTLLLSYLIFTKPL-TEQHGTGLLLIAMGITLKLLP 234 (271)
Q Consensus 190 ~si~~~l~~v~~~lls~~~f~e~~-s~~~~~G~~lvl~Gv~l~~~~ 234 (271)
.+.+..+....=.+.|.+. +|.+ =..+.+|..+-+.=+.+|...
T Consensus 163 Ls~a~fl~a~~W~lYGlli-~D~~IaipN~iG~~l~~~QL~Ly~~y 207 (243)
T KOG1623|consen 163 LSFALFLVAVQWLLYGLLI-KDFFIAIPNVLGFLLGLIQLILYFKY 207 (243)
T ss_pred HHHHHHHHHHHHHHHHHHh-cCeEEEcccHHHHHHHHHHHHHhhhc
Confidence 3445555444444556566 4543 467889999999998888433
No 152
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=50.13 E-value=15 Score=27.14 Aligned_cols=37 Identities=5% Similarity=0.091 Sum_probs=30.4
Q ss_pred HHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhccC
Q 024166 43 LPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLAD 81 (271)
Q Consensus 43 i~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~ 81 (271)
+..++..++. -|+++.+.+|.+..++++|+.++.+.+
T Consensus 70 ~~sL~W~~~V--dg~~pdr~D~~Ga~icl~G~~vil~~p 106 (109)
T COG1742 70 AASLAWLWVV--DGVRPDRYDWIGAAICLAGVAVILFGP 106 (109)
T ss_pred HHHHHHHHHH--cCcCCcHHHhhhHHHHHhceeeeEeCC
Confidence 3445677788 789999999999999999988887654
No 153
>COG2978 AbgT Putative p-aminobenzoyl-glutamate transporter [Coenzyme metabolism]
Probab=49.93 E-value=52 Score=31.14 Aligned_cols=93 Identities=10% Similarity=-0.059 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhccCCCCcccccccCCCcccee
Q 024166 174 GQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKPIKRTATSSFKVNIR 253 (271)
Q Consensus 174 ~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~k~~~~~~~~~~~~~~~~~~ 253 (271)
+.++-+......++...++.....+++--- +.-+-.-+|+......+++.=+.++...|..++|-.+-++...++ +
T Consensus 177 gGfsanl~~~~~D~Ll~GfTq~AA~iidp~---~~vnp~~NwyF~~as~~vl~~i~~fvTdKivEPRLg~~~~~~~~~-~ 252 (516)
T COG2978 177 GGFSANLLPGTIDPLLAGFTQPAAQIIDPS---YQVNPLMNWYFIAASVFVLTLIGWFVTDKIIEPRLGPYQGLSSEA-E 252 (516)
T ss_pred cccccccccCcchHHHHHhhHHHHHhcCCc---cccCcchhHHHHHHHHHHHHHHHHHHhccccccCCCCCCCcchhh-h
Confidence 334444555666666555544443333221 113344578888888888888888888888887743322222221 3
Q ss_pred ccccccchhhhhhhcCC
Q 024166 254 KLSFSEREEADEEKRAP 270 (271)
Q Consensus 254 ~~~~~~~~~~~~~~~~~ 270 (271)
++.++.+|--|+||+.+
T Consensus 253 ~~~~~~~~~t~~Ekkgl 269 (516)
T COG2978 253 DDENASQELTALEKKGL 269 (516)
T ss_pred hhhhhhhhcCHHHhccc
Confidence 33444445556677654
No 154
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=49.82 E-value=2.4e+02 Score=26.96 Aligned_cols=29 Identities=17% Similarity=0.164 Sum_probs=21.6
Q ss_pred CCchhhhhhHHHHHHHHHHHHhccCCCCc
Q 024166 211 KPLTEQHGTGLLLIAMGITLKLLPADDKP 239 (271)
Q Consensus 211 e~~s~~~~~G~~lvl~Gv~l~~~~k~~~~ 239 (271)
+.++....+|..+++.|+.+|......++
T Consensus 416 ~~~~~~~~ig~~i~l~G~~~Y~~~i~~~~ 444 (479)
T KOG1287|consen 416 SDFPVETLIGIGIILSGVPFYFLFIHWKK 444 (479)
T ss_pred ecCCccchhHHHHHHHhhhhheEEEEecC
Confidence 44455599999999999999976544333
No 155
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=49.09 E-value=2.2e+02 Score=26.39 Aligned_cols=6 Identities=50% Similarity=0.850 Sum_probs=2.4
Q ss_pred HHHHhH
Q 024166 182 IALFGA 187 (271)
Q Consensus 182 i~~~~a 187 (271)
.+.+++
T Consensus 359 ~~~~~~ 364 (455)
T TIGR00892 359 MDLVGA 364 (455)
T ss_pred HHHhhH
Confidence 334443
No 156
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=48.51 E-value=21 Score=28.52 Aligned_cols=12 Identities=25% Similarity=0.005 Sum_probs=5.8
Q ss_pred eccccccchhhh
Q 024166 253 RKLSFSEREEAD 264 (271)
Q Consensus 253 ~~~~~~~~~~~~ 264 (271)
..+.||.|||.|
T Consensus 35 ~~~~deldEEfD 46 (156)
T PF08372_consen 35 SAHPDELDEEFD 46 (156)
T ss_pred cCCcchhhhhhc
Confidence 344455455544
No 157
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.64 E-value=84 Score=23.50 Aligned_cols=22 Identities=14% Similarity=0.060 Sum_probs=11.7
Q ss_pred hhhhhhHHHHHHHHHHHHhccC
Q 024166 214 TEQHGTGLLLIAMGITLKLLPA 235 (271)
Q Consensus 214 s~~~~~G~~lvl~Gv~l~~~~k 235 (271)
+++.++...++-.|.-..+..|
T Consensus 73 sPwglIv~lllGf~AG~lnv~R 94 (116)
T COG5336 73 SPWGLIVFLLLGFGAGVLNVLR 94 (116)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH
Confidence 5666666655544444444433
No 158
>PRK15432 autoinducer 2 ABC transporter permease LsrC; Provisional
Probab=47.03 E-value=26 Score=31.87 Aligned_cols=24 Identities=4% Similarity=-0.323 Sum_probs=15.7
Q ss_pred hhhhhhHHHHHHHHHHHHhccCCC
Q 024166 214 TEQHGTGLLLIAMGITLKLLPADD 237 (271)
Q Consensus 214 s~~~~~G~~lvl~Gv~l~~~~k~~ 237 (271)
.+...++..+++..+.+....+++
T Consensus 287 ~~~~ii~g~lll~vl~~~~~~~~~ 310 (344)
T PRK15432 287 WWNDFIAGLVLLGVLVFDGRLRCA 310 (344)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHh
Confidence 456677777777777766655544
No 159
>KOG2592 consensus Tumor differentially expressed (TDE) protein [Function unknown]
Probab=46.41 E-value=25 Score=32.32 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=15.0
Q ss_pred hhhhhhHHHHHHHHHHHHhccC
Q 024166 214 TEQHGTGLLLIAMGITLKLLPA 235 (271)
Q Consensus 214 s~~~~~G~~lvl~Gv~l~~~~k 235 (271)
...+.+|.++.+..+.....+.
T Consensus 297 ~~~~iiGli~~~lcilYsalR~ 318 (426)
T KOG2592|consen 297 DATNIIGLIFLLLCILYSALRA 318 (426)
T ss_pred cccchHHHHHHHHHHHHHHhhc
Confidence 3356889988888876555443
No 160
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=46.06 E-value=41 Score=25.25 Aligned_cols=26 Identities=15% Similarity=0.299 Sum_probs=21.2
Q ss_pred cccccChhhHHHHHHHHHHHHHHhcc
Q 024166 55 LRRKYPAHEYVSALLLVVGLILFTLA 80 (271)
Q Consensus 55 l~e~~~~~~~l~~~l~~~Gv~v~~~~ 80 (271)
...|+++.+..++.++++|..+...+
T Consensus 4 ~~~KiN~~R~~al~lif~g~~vmy~g 29 (114)
T PF11023_consen 4 YSSKINKIRTFALSLIFIGMIVMYIG 29 (114)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45688888899999999998887653
No 161
>PF15387 DUF4611: Domain of unknown function (DUF4611)
Probab=46.00 E-value=7.7 Score=27.96 Aligned_cols=22 Identities=14% Similarity=0.184 Sum_probs=12.1
Q ss_pred CCCccceeccccccchhhhhhh
Q 024166 246 SSFKVNIRKLSFSEREEADEEK 267 (271)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~ 267 (271)
+...+..|.-.+++++|+|+|+
T Consensus 57 r~aa~p~E~ldg~deddaede~ 78 (96)
T PF15387_consen 57 RVAAAPDEALDGDDEDDAEDEN 78 (96)
T ss_pred ccccCchhhccCcccccccccc
Confidence 3344444555566666666654
No 162
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=44.73 E-value=2.9e+02 Score=26.40 Aligned_cols=14 Identities=14% Similarity=0.152 Sum_probs=6.3
Q ss_pred HHHHHHHHhccCCC
Q 024166 224 IAMGITLKLLPADD 237 (271)
Q Consensus 224 vl~Gv~l~~~~k~~ 237 (271)
++.+..+|...|++
T Consensus 450 ~~~~~~~y~~~~~~ 463 (507)
T TIGR00910 450 AALPFIIYALHDKK 463 (507)
T ss_pred HHHHHHHHHHhccc
Confidence 33444455544443
No 163
>PRK09412 anaerobic C4-dicarboxylate transporter; Reviewed
Probab=44.40 E-value=2.7e+02 Score=26.08 Aligned_cols=9 Identities=0% Similarity=-0.444 Sum_probs=4.8
Q ss_pred CchhhhhhH
Q 024166 212 PLTEQHGTG 220 (271)
Q Consensus 212 ~~s~~~~~G 220 (271)
.++...+..
T Consensus 162 gi~f~~~~~ 170 (433)
T PRK09412 162 GVSYLTLLM 170 (433)
T ss_pred CCCHHHHHH
Confidence 455555553
No 164
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=44.26 E-value=11 Score=24.57 Aligned_cols=12 Identities=17% Similarity=0.614 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHh
Q 024166 221 LLLIAMGITLKL 232 (271)
Q Consensus 221 ~~lvl~Gv~l~~ 232 (271)
+++++.|+++-+
T Consensus 8 IIviVlgvIigN 19 (55)
T PF11446_consen 8 IIVIVLGVIIGN 19 (55)
T ss_pred HHHHHHHHHHhH
Confidence 344455555444
No 165
>PRK11246 hypothetical protein; Provisional
Probab=43.90 E-value=27 Score=29.44 Aligned_cols=22 Identities=18% Similarity=0.309 Sum_probs=9.6
Q ss_pred ccccChhhHHHHHHHHHHHHHH
Q 024166 56 RRKYPAHEYVSALLLVVGLILF 77 (271)
Q Consensus 56 ~e~~~~~~~l~~~l~~~Gv~v~ 77 (271)
|.|+...+.+-++++++-++++
T Consensus 5 ~~~fRl~r~~iiliclallv~l 26 (218)
T PRK11246 5 KLKFRLHRTAIVLICLALLVAL 26 (218)
T ss_pred HHHhHHHHHHHHHHHHHHHHHH
Confidence 3445555544444444443333
No 166
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=43.78 E-value=13 Score=29.55 Aligned_cols=13 Identities=15% Similarity=0.054 Sum_probs=5.8
Q ss_pred hHHHHHHHHHHHH
Q 024166 219 TGLLLIAMGITLK 231 (271)
Q Consensus 219 ~G~~lvl~Gv~l~ 231 (271)
+|..++++.+++.
T Consensus 58 VGg~ill~il~lv 70 (154)
T PF04478_consen 58 VGGPILLGILALV 70 (154)
T ss_pred ccHHHHHHHHHhh
Confidence 3445554444333
No 167
>KOG0847 consensus Transcription factor, contains HOX domain [Transcription]
Probab=43.23 E-value=12 Score=31.52 Aligned_cols=20 Identities=0% Similarity=-0.137 Sum_probs=12.0
Q ss_pred hhhhhhHHHHHHHHHHHHhc
Q 024166 214 TEQHGTGLLLIAMGITLKLL 233 (271)
Q Consensus 214 s~~~~~G~~lvl~Gv~l~~~ 233 (271)
-..+-.|+...-.+|+.-++
T Consensus 199 ~lA~~lgmteSqvkVWFQNR 218 (288)
T KOG0847|consen 199 QLAQELNMTESQVKVWFQNR 218 (288)
T ss_pred HhhccccccHHHHHHHHhcc
Confidence 34445566677777766554
No 168
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=42.67 E-value=8.2 Score=33.88 Aligned_cols=94 Identities=10% Similarity=0.117 Sum_probs=0.0
Q ss_pred hHHHHHhhcchHHHHH-HHHhhccccccc-ChhhHHHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhhHhH
Q 024166 32 PAQLMFKSTKVLPVMV-MGAFIPGLRRKY-PAHEYVSALLLVVGLILFTLADAQTSPNFSMIGVIMISGALIMDSFLGNL 109 (271)
Q Consensus 32 ~~~~i~~s~~pi~v~~-~~~ll~~l~e~~-~~~~~l~~~l~~~Gv~v~~~~~~~~~~~~~~~G~~l~l~s~~~~a~~~v~ 109 (271)
+..+++.|...+.+++ +=.++ ||||. ...-.+|++++++-+.+...-.. .+..-+.|+++.++.+.+-=..+.|
T Consensus 50 ~a~~vl~sfAvvliiIIiIIml--F~RrLLCPLGlLCiilimi~lLv~~L~tL--tGQ~LF~Gi~~l~l~~lLaL~vW~Y 125 (381)
T PF05297_consen 50 GALTVLYSFAVVLIIIIIIIML--FKRRLLCPLGLLCIILIMIVLLVSMLWTL--TGQTLFVGIVILFLCCLLALGVWFY 125 (381)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred chHHHHHHHHHHHHHHHHHHHH--HHHhhcCcchHHHHHHHHHHHHHHHHHHh--hccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555544443333 33334 55553 45555677666666555443221 1234577877655443322111223
Q ss_pred HHHHHhhCCCCChhhHHHHHHH
Q 024166 110 QEAIFTMNPETTQMEMLFCSTV 131 (271)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~ 131 (271)
. .+++++.. +.++++.++..
T Consensus 126 m-~lLr~~GA-s~WtiLaFcLA 145 (381)
T PF05297_consen 126 M-WLLRELGA-SFWTILAFCLA 145 (381)
T ss_dssp ----------------------
T ss_pred H-HHHHHhhh-HHHHHHHHHHH
Confidence 2 24555543 35666655443
No 169
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=42.46 E-value=17 Score=27.82 Aligned_cols=8 Identities=0% Similarity=-0.359 Sum_probs=3.0
Q ss_pred HHhccCCC
Q 024166 230 LKLLPADD 237 (271)
Q Consensus 230 l~~~~k~~ 237 (271)
.|..+|++
T Consensus 85 ~y~irR~~ 92 (122)
T PF01102_consen 85 SYCIRRLR 92 (122)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHHh
Confidence 33433333
No 170
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=42.43 E-value=2.9e+02 Score=25.82 Aligned_cols=15 Identities=20% Similarity=0.439 Sum_probs=6.7
Q ss_pred hhHHHHHHHHHHHHh
Q 024166 218 GTGLLLIAMGITLKL 232 (271)
Q Consensus 218 ~~G~~lvl~Gv~l~~ 232 (271)
..|...++.++....
T Consensus 417 ~~~~~~~i~~~~~~~ 431 (476)
T PLN00028 417 LMGVMIIACTLPVAF 431 (476)
T ss_pred HHHHHHHHHHHHHHh
Confidence 344444554444433
No 171
>PF10754 DUF2569: Protein of unknown function (DUF2569); InterPro: IPR019690 This entry represents a protein that is conserved in bacteria. The function is not known, but several members are annotated as being YdgK or a homologue thereof and associated to the inner membrane. This signature also matches proteins that are described as transglutaminase-like enzymes, although this could not be confirmed.
Probab=41.78 E-value=1.7e+02 Score=22.93 Aligned_cols=28 Identities=4% Similarity=-0.318 Sum_probs=20.4
Q ss_pred CchHHHHHHHHHHHHHHHhhHhHHHHHH
Q 024166 87 NFSMIGVIMISGALIMDSFLGNLQEAIF 114 (271)
Q Consensus 87 ~~~~~G~~l~l~s~~~~a~~~v~~~~~~ 114 (271)
.....+.+..+++++.+.-|....||+.
T Consensus 117 ~~~i~~l~~~li~a~IwipYf~~S~RVK 144 (149)
T PF10754_consen 117 AEAIRELLRSLIAAAIWIPYFLRSKRVK 144 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhh
Confidence 3456778888888888888877766653
No 172
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=41.52 E-value=1.1e+02 Score=22.66 Aligned_cols=46 Identities=13% Similarity=0.063 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhccC
Q 024166 190 TAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPA 235 (271)
Q Consensus 190 ~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~k 235 (271)
.+-.+-+-.+.+.++.+++=+..++..-|+|.++++.|+.+..+..
T Consensus 61 YAAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~p 106 (109)
T COG1742 61 YAAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGP 106 (109)
T ss_pred HHHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCC
Confidence 4556667778899999999999999999999999999987766553
No 173
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=40.54 E-value=4.6e+02 Score=27.55 Aligned_cols=61 Identities=20% Similarity=0.290 Sum_probs=34.5
Q ss_pred HHHHHHHHhhcccc-cccChhhHHHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHh
Q 024166 43 LPVMVMGAFIPGLR-RKYPAHEYVSALLLVVGLILFTLADAQTSPNFSMIGVIMISGALIMDSF 105 (271)
Q Consensus 43 i~v~~~~~ll~~l~-e~~~~~~~l~~~l~~~Gv~v~~~~~~~~~~~~~~~G~~l~l~s~~~~a~ 105 (271)
+.++++-+++ +| -|.+....+++=+++++.+++.+--+-.-..-++.|.++++.-.+=.++
T Consensus 342 ~lv~~vl~lf--l~~~r~~liv~~~IPisi~~t~~~m~~~g~slN~~SL~gl~laiG~lVDdaI 403 (1021)
T PF00873_consen 342 ILVVLVLLLF--LRNWRSALIVALSIPISILGTFIFMYLFGISLNIMSLAGLILAIGMLVDDAI 403 (1021)
T ss_dssp HHHHHHHHHH--HTSHHHHHHHHHHHHHHHHHHHHHHHHTTTTBEHHHHHHHHHHHHHHHHHHH
T ss_pred Hhhhhhhhhh--hcchHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHhHHHhcccccccce
Confidence 3444555555 54 4777777788888888877665322111112357777776654333344
No 174
>PF14002 YniB: YniB-like protein
Probab=40.28 E-value=42 Score=26.92 Aligned_cols=52 Identities=19% Similarity=0.098 Sum_probs=29.6
Q ss_pred hhhhHHHHHHHHHHHHhccCCCCcccccccC--CCccceecccccc-chhhhhhh
Q 024166 216 QHGTGLLLIAMGITLKLLPADDKPIKRTATS--SFKVNIRKLSFSE-REEADEEK 267 (271)
Q Consensus 216 ~~~~G~~lvl~Gv~l~~~~k~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~ 267 (271)
..|+=..+++.|+.+..-..+-.++.+..++ ++|--+|+.+|+| +--|+-|+
T Consensus 76 ~F~vIy~liFvGlAL~aSG~rm~rqvk~ire~IEdqlIlE~akG~~g~treqlE~ 130 (166)
T PF14002_consen 76 MFWVIYLLIFVGLALQASGARMSRQVKFIREGIEDQLILEQAKGSEGRTREQLEE 130 (166)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHHHHHHhcCCccccHHHHHh
Confidence 3444456778888777655443333333333 6676677777776 33344443
No 175
>PF09656 PGPGW: Putative transmembrane protein (PGPGW); InterPro: IPR019099 This entry represents proteins that contain three predicted transmembrane helices and an unusual motif with consensus sequence PGPGW.
Probab=39.39 E-value=1e+02 Score=19.81 Aligned_cols=45 Identities=18% Similarity=0.235 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhhHhHHHHHHhh
Q 024166 63 EYVSALLLVVGLILFTLADAQTSPNFSMIGVIMISGALIMDSFLGNLQEAIFTM 116 (271)
Q Consensus 63 ~~l~~~l~~~Gv~v~~~~~~~~~~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~ 116 (271)
..++..+.++|+++..... .|.+..+.+....+......++.+++
T Consensus 5 ~v~G~~lv~~Gii~~~lPG---------pG~l~i~~GL~iLa~ef~wArr~l~~ 49 (53)
T PF09656_consen 5 GVLGWVLVVAGIIMLPLPG---------PGLLVIFLGLAILATEFPWARRLLRR 49 (53)
T ss_pred hhHHHHHHHHHHHhhcCCC---------CcHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4578888999998876643 16666666666666666666666554
No 176
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=38.87 E-value=99 Score=25.81 Aligned_cols=48 Identities=19% Similarity=0.214 Sum_probs=29.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhCCCch-hhhhhHH-HHHHHHHHHH
Q 024166 184 LFGAATTAMVTTARKAVTLLLSYLIFTKPLT-EQHGTGL-LLIAMGITLK 231 (271)
Q Consensus 184 ~~~a~~~si~~~l~~v~~~lls~~~f~e~~s-~~~~~G~-~lvl~Gv~l~ 231 (271)
...+...+.++.+-|..+..++..+-+--.. ..+|+|. .+++.|....
T Consensus 30 ~~~~l~ig~~~~~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~mi 79 (206)
T TIGR02840 30 FLSNLIIAVISGLFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIWII 79 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHH
Confidence 3555666677777777777777766643222 3456665 5566676543
No 177
>PF11022 DUF2611: Protein of unknown function (DUF2611); InterPro: IPR021278 This family is conserved in the Dikarya of Fungi. The function is not known.
Probab=38.55 E-value=13 Score=25.50 Aligned_cols=30 Identities=17% Similarity=0.193 Sum_probs=15.0
Q ss_pred HHHhCCCc-hhhhhhHHHHHHHHHHHHhccC
Q 024166 206 YLIFTKPL-TEQHGTGLLLIAMGITLKLLPA 235 (271)
Q Consensus 206 ~~~f~e~~-s~~~~~G~~lvl~Gv~l~~~~k 235 (271)
+-++|.++ +..-.+|.+-.++|+..+...+
T Consensus 5 Y~I~Gr~V~~H~LAi~tLg~~~~~~~~~~~g 35 (71)
T PF11022_consen 5 YTIFGRQVQSHYLAIATLGTVFGGVYLATSG 35 (71)
T ss_pred eeecccccccchhHHHHHHHHHHHheeccCC
Confidence 44566655 3334455555555554444333
No 178
>PRK02935 hypothetical protein; Provisional
Probab=37.86 E-value=52 Score=24.40 Aligned_cols=49 Identities=14% Similarity=0.241 Sum_probs=29.4
Q ss_pred cccccChhhHHHHHHHHHHHHHHhccCCCCC-----CCchHHHHHHHHHHHHHH
Q 024166 55 LRRKYPAHEYVSALLLVVGLILFTLADAQTS-----PNFSMIGVIMISGALIMD 103 (271)
Q Consensus 55 l~e~~~~~~~l~~~l~~~Gv~v~~~~~~~~~-----~~~~~~G~~l~l~s~~~~ 103 (271)
...|+++.+-.++.++++|..+...+-.-.. .-+-..|.+..+.|...|
T Consensus 5 ~ssKINkiRt~aL~lvfiG~~vMy~Giff~~~~~~m~ifm~~G~l~~l~S~vvY 58 (110)
T PRK02935 5 YSNKINKIRTFALSLVFIGFIVMYLGIFFRESIIIMTIFMLLGFLAVIASTVVY 58 (110)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888888899999999887654421111 112345666566555544
No 179
>PF07214 DUF1418: Protein of unknown function (DUF1418); InterPro: IPR010815 This family consists of several hypothetical Enterobacterial proteins of around 100 residues in length. Members of this family are often described as YbjC. In Escherichia coli the ybjC gene is located downstream of nfsA (which encodes the major oxygen-insensitive nitroreductase). It is thought that nfsA and ybjC form an operon an its promoter is a class I SoxS-dependent promoter []. The function of this family is unknown.
Probab=37.49 E-value=32 Score=25.07 Aligned_cols=8 Identities=25% Similarity=0.330 Sum_probs=3.1
Q ss_pred hHHHHHHH
Q 024166 219 TGLLLIAM 226 (271)
Q Consensus 219 ~G~~lvl~ 226 (271)
+|+.+.+=
T Consensus 51 ~Gi~lMlP 58 (96)
T PF07214_consen 51 VGIGLMLP 58 (96)
T ss_pred HHHHHHHH
Confidence 34444333
No 180
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=37.48 E-value=2.8e+02 Score=24.11 Aligned_cols=112 Identities=15% Similarity=0.159 Sum_probs=63.5
Q ss_pred hhhHHHHH-HHHHHHHHhhhHhhcCcchhHHHHHhhcchHH-HHHHHHh-hcccccc---cChhhHHHHHHHHHHHHHHh
Q 024166 5 WKTYVKLS-AVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLP-VMVMGAF-IPGLRRK---YPAHEYVSALLLVVGLILFT 78 (271)
Q Consensus 5 ~~~~~~~~-~l~~~~~~l~~~al~~~~~~~~~i~~s~~pi~-v~~~~~l-l~~l~e~---~~~~~~l~~~l~~~Gv~v~~ 78 (271)
+..+..+| .++..++.+.--..+.+..+....+=++.-+. --..+++ ++|.++. .+...+++++++++|..++.
T Consensus 54 f~p~amlgG~lW~~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~ 133 (254)
T PF07857_consen 54 FYPWAMLGGALWATGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFS 133 (254)
T ss_pred ceeHHHhhhhhhhcCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHhee
Confidence 33444555 34455666666666666666666555543222 2233333 3112222 23566689999999988776
Q ss_pred ccCCCC-------C----------------------C--C------chHHHHHHHHHHHHHHHhhHhHHHHHHhh
Q 024166 79 LADAQT-------S----------------------P--N------FSMIGVIMISGALIMDSFLGNLQEAIFTM 116 (271)
Q Consensus 79 ~~~~~~-------~----------------------~--~------~~~~G~~l~l~s~~~~a~~~v~~~~~~~~ 116 (271)
.-+.+. + + + .++.|+.+++++-++||...+=.+.+.++
T Consensus 134 fik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~vd~l~~~~~RivG~~LAv~aGvlyGs~fvPv~Yi~~~ 208 (254)
T PF07857_consen 134 FIKSEEKEPKKSSEETPLSIEDVIEIEDDSENSEDSSWVDELSPRKKRIVGIILAVFAGVLYGSNFVPVIYIQDH 208 (254)
T ss_pred eecCCCCCccccccccccccccccccccccccccccccccccccccchhHhHHHHHHHHHHHhcccchHHHHHhC
Confidence 521110 0 0 0 36788888888888888887755544443
No 181
>PRK12489 anaerobic C4-dicarboxylate transporter; Reviewed
Probab=37.43 E-value=3.6e+02 Score=25.48 Aligned_cols=12 Identities=17% Similarity=0.415 Sum_probs=5.8
Q ss_pred HHHHhhcccccccC
Q 024166 47 VMGAFIPGLRRKYP 60 (271)
Q Consensus 47 ~~~~ll~~l~e~~~ 60 (271)
++..++ ++-|..
T Consensus 9 ~l~~i~--~g~r~g 20 (443)
T PRK12489 9 LLICLF--LGARYG 20 (443)
T ss_pred HHHHHH--Hhhhhh
Confidence 444455 455544
No 182
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=37.37 E-value=68 Score=23.86 Aligned_cols=30 Identities=10% Similarity=0.077 Sum_probs=23.4
Q ss_pred HHHHHHhhcccccccChhhHHHHHHHHHHHHH
Q 024166 45 VMVMGAFIPGLRRKYPAHEYVSALLLVVGLIL 76 (271)
Q Consensus 45 v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v 76 (271)
.+.++.+. +||+++++...+-++++.++.+
T Consensus 76 F~~Fsv~~--l~E~l~~n~l~af~~i~~av~f 105 (108)
T PF04342_consen 76 FAPFSVFY--LGEPLKWNYLWAFLCILGAVYF 105 (108)
T ss_pred eHHHHHHH--hCCCccHHHHHHHHHHHHhhhe
Confidence 34677888 8999999998888887666553
No 183
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=37.02 E-value=28 Score=26.62 Aligned_cols=11 Identities=9% Similarity=0.054 Sum_probs=5.1
Q ss_pred HHHHHHHHHhc
Q 024166 223 LIAMGITLKLL 233 (271)
Q Consensus 223 lvl~Gv~l~~~ 233 (271)
+++.|+++..+
T Consensus 46 vlvi~~~LLgr 56 (125)
T PF15048_consen 46 VLVISFFLLGR 56 (125)
T ss_pred HHHHHHHHHHH
Confidence 34445555443
No 184
>PF04697 Pinin_SDK_N: pinin/SDK conserved region; InterPro: IPR006787 This conserved region is found at the N-terminal of the member proteins. It is located adjacent and N-terminal to the pinin/SKD/memA domain IPR006786 from INTERPRO. Members of this family have very varied localisations within the eukaryotic cell. Pinin is known to localise at the desmosomes and is implicated in anchoring intermediate filaments to the desmosomal plaque [, ]. SDK2/3 is a dynamically localised nuclear protein thought to be involved in modulation of alternative pre-mRNA splicing []. MemA is a tumour marker preferentially expressed in human melanoma cell lines. A common feature of the members of this family is that they may all participate in regulating protein-protein interactions [].
Probab=36.88 E-value=15 Score=28.21 Aligned_cols=19 Identities=26% Similarity=0.303 Sum_probs=12.1
Q ss_pred eccccccchhhhhhhcCCC
Q 024166 253 RKLSFSEREEADEEKRAPV 271 (271)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~ 271 (271)
|--.++.+||+|++++|-|
T Consensus 95 ~s~~d~daeeDdd~kKPav 113 (134)
T PF04697_consen 95 PSRHDDDAEEDDDVKKPAV 113 (134)
T ss_pred cccccccccccchhhcccc
Confidence 4444566666777788754
No 185
>PHA03049 IMV membrane protein; Provisional
Probab=36.33 E-value=51 Score=22.21 Aligned_cols=24 Identities=4% Similarity=0.033 Sum_probs=17.2
Q ss_pred hhhhhHHHHHHHHHHHHhccCCCC
Q 024166 215 EQHGTGLLLIAMGITLKLLPADDK 238 (271)
Q Consensus 215 ~~~~~G~~lvl~Gv~l~~~~k~~~ 238 (271)
-.-++++.+++.|..+|....+++
T Consensus 4 d~~l~iICVaIi~lIvYgiYnkk~ 27 (68)
T PHA03049 4 DIILVIICVVIIGLIVYGIYNKKT 27 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc
Confidence 345678888899999997665443
No 186
>PF03348 Serinc: Serine incorporator (Serinc); InterPro: IPR005016 This is a family of proteins which display differential expression in various tumour and cell lines. The function of these proteins is unknown. ; GO: 0016020 membrane
Probab=35.77 E-value=59 Score=30.51 Aligned_cols=23 Identities=22% Similarity=0.153 Sum_probs=17.5
Q ss_pred chhhhhhHHHHHHHHHHHHhccC
Q 024166 213 LTEQHGTGLLLIAMGITLKLLPA 235 (271)
Q Consensus 213 ~s~~~~~G~~lvl~Gv~l~~~~k 235 (271)
-++...+|.++.+..+..-..+.
T Consensus 283 ~~~~~iig~i~~~~~v~yss~ra 305 (429)
T PF03348_consen 283 NTWQSIIGLIFTFVSVLYSSFRA 305 (429)
T ss_pred chHHHHHHHHHHHHHHHHhcccc
Confidence 56777999999999986665543
No 187
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=35.75 E-value=36 Score=21.25 Aligned_cols=22 Identities=14% Similarity=0.146 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHhccCCCCccc
Q 024166 220 GLLLIAMGITLKLLPADDKPIK 241 (271)
Q Consensus 220 G~~lvl~Gv~l~~~~k~~~~~~ 241 (271)
-..+++.|++++.++++++++-
T Consensus 17 ~~~~~F~gi~~w~~~~~~k~~~ 38 (49)
T PF05545_consen 17 LFFVFFIGIVIWAYRPRNKKRF 38 (49)
T ss_pred HHHHHHHHHHHHHHcccchhhH
Confidence 3456777888888876654443
No 188
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=35.65 E-value=36 Score=26.79 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHH-----HHHHhCCCc
Q 024166 188 ATTAMVTTARKAVTLLL-----SYLIFTKPL 213 (271)
Q Consensus 188 ~~~si~~~l~~v~~~ll-----s~~~f~e~~ 213 (271)
+..+.+-++-|++++++ .+++++|.+
T Consensus 75 L~sA~LvYi~PL~~l~v~~~La~~L~~~e~~ 105 (150)
T COG3086 75 LKSALLVYIFPLVGLFLGAILAQYLFFSELI 105 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 33344444444444444 444555543
No 189
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=35.63 E-value=29 Score=25.56 Aligned_cols=7 Identities=43% Similarity=0.795 Sum_probs=2.7
Q ss_pred chhhhhh
Q 024166 260 REEADEE 266 (271)
Q Consensus 260 ~~~~~~~ 266 (271)
+++.|||
T Consensus 97 ~~~~Dee 103 (103)
T PF06422_consen 97 KKKNDEE 103 (103)
T ss_pred cccCCCC
Confidence 3334443
No 190
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=35.17 E-value=41 Score=32.71 Aligned_cols=22 Identities=9% Similarity=-0.067 Sum_probs=13.0
Q ss_pred hhhhhhHHHHHHHHHHHHhccC
Q 024166 214 TEQHGTGLLLIAMGITLKLLPA 235 (271)
Q Consensus 214 s~~~~~G~~lvl~Gv~l~~~~k 235 (271)
+...+.|++.++.-++.....+
T Consensus 527 ttf~~~giAcl~~l~~~~~iq~ 548 (618)
T KOG3762|consen 527 TTFRIFGIACLVTLALFISIQL 548 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 6677788876555554444433
No 191
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=34.68 E-value=4.2e+02 Score=25.42 Aligned_cols=17 Identities=29% Similarity=0.237 Sum_probs=7.1
Q ss_pred ChhhHHHHHHHHHHHHH
Q 024166 60 PAHEYVSALLLVVGLIL 76 (271)
Q Consensus 60 ~~~~~l~~~l~~~Gv~v 76 (271)
+++....+.+...|+..
T Consensus 363 ~~~~~~~~~ll~~gl~~ 379 (509)
T KOG2504|consen 363 RALVLFLLTLLIAGLAR 379 (509)
T ss_pred chHHHHHHHHHHHHHHH
Confidence 33333444444444443
No 192
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=34.42 E-value=1e+02 Score=27.70 Aligned_cols=55 Identities=11% Similarity=0.129 Sum_probs=39.2
Q ss_pred hhhHhhcCcchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHH
Q 024166 21 LTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILF 77 (271)
Q Consensus 21 l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~ 77 (271)
..+.=+..+++-+-++.--.+-+.+.+++..+ .+++.+...|++..++..|+..-
T Consensus 259 sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii--~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 259 SEFLLLSRTSSLTLSIAGIVKEVCTLLLAIII--LKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred HHHheeeeccceeeeHHHHHHHHHHHHHHHHH--hhcchhhhHHHHHHHHHHHHHHh
Confidence 33444555555444455555667778888888 78888888888888888888876
No 193
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=34.37 E-value=3.1e+02 Score=23.76 Aligned_cols=8 Identities=13% Similarity=0.110 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 024166 224 IAMGITLK 231 (271)
Q Consensus 224 vl~Gv~l~ 231 (271)
.+.++...
T Consensus 161 ~~~~~~~~ 168 (379)
T TIGR00881 161 IIVSLICF 168 (379)
T ss_pred HHHHHHHh
Confidence 33344333
No 194
>COG0387 ChaA Ca2+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=34.14 E-value=3.8e+02 Score=24.69 Aligned_cols=26 Identities=4% Similarity=-0.058 Sum_probs=18.7
Q ss_pred CCchhhhhhHHHHHHHHHHHHhccCC
Q 024166 211 KPLTEQHGTGLLLIAMGITLKLLPAD 236 (271)
Q Consensus 211 e~~s~~~~~G~~lvl~Gv~l~~~~k~ 236 (271)
...+..+-.+...+..++|.......
T Consensus 161 ~~~~~~~s~~~avv~i~~Y~lfL~fq 186 (368)
T COG0387 161 GNFSLGQSLFVAVVLIALYGLFLFFQ 186 (368)
T ss_pred CcchHhHHHHHHHHHHHHHHHHHHhh
Confidence 46678888888888888876655543
No 195
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=33.96 E-value=34 Score=20.66 Aligned_cols=19 Identities=21% Similarity=0.405 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHHhccCCC
Q 024166 219 TGLLLIAMGITLKLLPADD 237 (271)
Q Consensus 219 ~G~~lvl~Gv~l~~~~k~~ 237 (271)
+|.++++.+.+++.|+|++
T Consensus 21 V~vI~~vl~~~l~~~~rR~ 39 (40)
T PF08693_consen 21 VGVIIIVLGAFLFFWYRRK 39 (40)
T ss_pred hHHHHHHHHHHhheEEecc
Confidence 4566667777777666554
No 196
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=33.66 E-value=51 Score=27.88 Aligned_cols=17 Identities=18% Similarity=0.157 Sum_probs=9.2
Q ss_pred hhHHHHHHHHHHHHhcc
Q 024166 218 GTGLLLIAMGITLKLLP 234 (271)
Q Consensus 218 ~~G~~lvl~Gv~l~~~~ 234 (271)
++|++++++.++.|.+.
T Consensus 19 aI~IV~lLIiiva~~lf 35 (217)
T PF07423_consen 19 AIGIVSLLIIIVAYQLF 35 (217)
T ss_pred HHHHHHHHHHHHhhhhe
Confidence 45555555555555443
No 197
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=33.42 E-value=66 Score=21.75 Aligned_cols=26 Identities=12% Similarity=0.015 Sum_probs=18.6
Q ss_pred hhhhhHHHHHHHHHHHHhccCCCCcc
Q 024166 215 EQHGTGLLLIAMGITLKLLPADDKPI 240 (271)
Q Consensus 215 ~~~~~G~~lvl~Gv~l~~~~k~~~~~ 240 (271)
-.-++++.+++.|..+|....+++..
T Consensus 4 d~iLi~ICVaii~lIlY~iYnr~~~~ 29 (68)
T PF05961_consen 4 DFILIIICVAIIGLILYGIYNRKKTT 29 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccc
Confidence 34577888899999999876544433
No 198
>PF12446 DUF3682: Protein of unknown function (DUF3682); InterPro: IPR022152 This domain family is found in eukaryotes, and is typically between 125 and 136 amino acids in length.
Probab=31.57 E-value=16 Score=27.68 Aligned_cols=8 Identities=50% Similarity=0.796 Sum_probs=5.3
Q ss_pred hhhhhhhc
Q 024166 261 EEADEEKR 268 (271)
Q Consensus 261 ~~~~~~~~ 268 (271)
||||.|||
T Consensus 101 EeEe~Ekq 108 (133)
T PF12446_consen 101 EEEENEKQ 108 (133)
T ss_pred hhhhhhhh
Confidence 66666765
No 199
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=31.31 E-value=23 Score=27.11 Aligned_cols=33 Identities=15% Similarity=0.259 Sum_probs=14.4
Q ss_pred CCCchhhhhhHHHH-HHHHH---HHHhccCCCCcccc
Q 024166 210 TKPLTEQHGTGLLL-IAMGI---TLKLLPADDKPIKR 242 (271)
Q Consensus 210 ~e~~s~~~~~G~~l-vl~Gv---~l~~~~k~~~~~~~ 242 (271)
.+.++-..++|+++ +++|+ ++....--++.+|+
T Consensus 58 ~h~fs~~~i~~Ii~gv~aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 58 VHRFSEPAIIGIIFGVMAGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp SSSSS-TCHHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred ccCccccceeehhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34566555666554 33333 33344444444443
No 200
>TIGR00770 Dcu anaerobic c4-dicarboxylate membrane transporter family protein. These proteins are members of th C4-Dicarboxylate Uptake (Dcu) Family (TC 2.A.13). Most proteins in this family have 12 GES predicted transmembrane regions; however one member has 10 experimentally determined transmembrane regions with both the N- and C-termini localized to the periplasm. The two Escherichia coli proteins, DcuA and DcuB, transport aspartate, malate, fumarate and succinate, and function as antiporters with any two of these substrates. Since DcuA is encoded in an operon with the gene for aspartase, and DcuB is encoded in an operon with the gene for fumarase, their physiological functions may be to catalyze aspartate:fumarate and fumarate:malate exchange during the anaerobic utilization of aspartate and fumarate, respectively.
Probab=31.26 E-value=4.5e+02 Score=24.69 Aligned_cols=13 Identities=38% Similarity=0.393 Sum_probs=6.8
Q ss_pred CchHHHHHHHHHH
Q 024166 87 NFSMIGVIMISGA 99 (271)
Q Consensus 87 ~~~~~G~~l~l~s 99 (271)
+.+...+++....
T Consensus 43 ~~~vI~~il~vgg 55 (430)
T TIGR00770 43 PFDVILIIMAVIA 55 (430)
T ss_pred CHHHHHHHHHHHH
Confidence 4455555554443
No 201
>PRK13664 hypothetical protein; Provisional
Probab=31.21 E-value=30 Score=22.54 Aligned_cols=19 Identities=16% Similarity=0.259 Sum_probs=14.7
Q ss_pred hhhhHHHHHHHHHHHHhcc
Q 024166 216 QHGTGLLLIAMGITLKLLP 234 (271)
Q Consensus 216 ~~~~G~~lvl~Gv~l~~~~ 234 (271)
+.|+=+.+++.|+++....
T Consensus 7 yWWilill~lvG~i~N~iK 25 (62)
T PRK13664 7 YWWILVLVFLVGVLLNVIK 25 (62)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566688899999988754
No 202
>TIGR00819 ydaH p-Aminobenzoyl-glutamate transporter family. The p-Aminobenzoyl-glutamate transporter family includes two transporters, the AbgT (YdaH) protein of E. coli and MtrF of Neisseria gonorrhoea. AbgT is apparently cryptic in wild type cells, but when expressed on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs. p-Aminobenzoate is a constituent of and a precursor for the biosynthesis of folic acid.
Probab=31.18 E-value=4.2e+02 Score=25.61 Aligned_cols=16 Identities=6% Similarity=0.158 Sum_probs=10.2
Q ss_pred HHhhHhHHHHHHhhCC
Q 024166 103 DSFLGNLQEAIFTMNP 118 (271)
Q Consensus 103 ~a~~~v~~~~~~~~~~ 118 (271)
.|+.....+|..+|.+
T Consensus 103 tG~i~a~i~~~v~~~p 118 (513)
T TIGR00819 103 SGLIPALMRKLASHSN 118 (513)
T ss_pred hcHHHHHHHHHHHhCC
Confidence 4566666677777654
No 203
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=31.03 E-value=4.4e+02 Score=24.55 Aligned_cols=47 Identities=21% Similarity=0.324 Sum_probs=31.3
Q ss_pred HHHhhcccccccChhhHHHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHH
Q 024166 48 MGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTSPNFSMIGVIMISGA 99 (271)
Q Consensus 48 ~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~~~~~~~~~~~G~~l~l~s 99 (271)
.-+++ .|-++..|.+.++++..+|..+++..++- ...+.|+.++=+|
T Consensus 79 aP~fi--~~v~y~~Ri~~~~~l~~~g~l~va~~~~v---~~~l~Gv~las~s 125 (402)
T PF02487_consen 79 APFFI--HRVPYWIRILICVALSAAGMLLVAFSPSV---WVRLLGVVLASLS 125 (402)
T ss_pred hHhhh--hhccchHHHHHHHHHHHHHHhheeeccch---hHHHHHHHHHhhh
Confidence 44445 46777899999999999999988875421 2345555544433
No 204
>PF11040 DGF-1_C: Dispersed gene family protein 1 of Trypanosoma cruzi C-terminus ; InterPro: IPR021053 Dispersed gene family protein 1 of Trypanosoma cruzi is likely to be highly expressed, and is expressed from the sub-telomeric region []. However, its function is not known. This entry represents the C-terminal domain on this protein.
Probab=30.57 E-value=19 Score=24.86 Aligned_cols=20 Identities=35% Similarity=0.464 Sum_probs=11.8
Q ss_pred cceeccccccchhhhhhhcCC
Q 024166 250 VNIRKLSFSEREEADEEKRAP 270 (271)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~ 270 (271)
+.+|...-| +||.|||+|-|
T Consensus 17 GgLeALLrD-deesdEetqkp 36 (87)
T PF11040_consen 17 GGLEALLRD-DEESDEETQKP 36 (87)
T ss_pred ccHHHHhcc-ccccchhhcch
Confidence 455555443 56677777754
No 205
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=30.51 E-value=72 Score=29.70 Aligned_cols=24 Identities=29% Similarity=0.639 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHH
Q 024166 165 VFEAMATFIGQVSVLSLIALFGAA 188 (271)
Q Consensus 165 ~l~~~~~~~~~~~~~~~i~~~~a~ 188 (271)
.++++++.+|-..+-....+++..
T Consensus 120 ~las~ssg~GE~tfL~lt~~y~~~ 143 (402)
T PF02487_consen 120 VLASLSSGLGEVTFLSLTHFYGKS 143 (402)
T ss_pred HHHhhhhhhhHHHHHHHHHhcCcc
Confidence 344455555555555555555543
No 206
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=30.30 E-value=1.5e+02 Score=28.43 Aligned_cols=43 Identities=12% Similarity=0.036 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHH------hC----CCchhhhhhHHHHHHHHHHHH-hccCC
Q 024166 194 TTARKAVTLLLSYLI------FT----KPLTEQHGTGLLLIAMGITLK-LLPAD 236 (271)
Q Consensus 194 ~~l~~v~~~lls~~~------f~----e~~s~~~~~G~~lvl~Gv~l~-~~~k~ 236 (271)
..+.|..+..++-+- +. +.-|...|+..++.+.+..+. ...|+
T Consensus 178 ~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E 231 (488)
T KOG2325|consen 178 IILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKE 231 (488)
T ss_pred HHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheee
Confidence 344555555555443 12 345778888888866665543 33333
No 207
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=30.27 E-value=76 Score=20.20 Aligned_cols=17 Identities=6% Similarity=0.063 Sum_probs=9.4
Q ss_pred HHHHHHHHHHhccCCCC
Q 024166 222 LLIAMGITLKLLPADDK 238 (271)
Q Consensus 222 ~lvl~Gv~l~~~~k~~~ 238 (271)
++.+.|+.+....|...
T Consensus 12 v~~lLg~~I~~~~K~yg 28 (50)
T PF12606_consen 12 VMGLLGLSICTTLKAYG 28 (50)
T ss_pred HHHHHHHHHHHHhhccc
Confidence 34556666666555443
No 208
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=30.25 E-value=3.2e+02 Score=22.68 Aligned_cols=17 Identities=18% Similarity=0.276 Sum_probs=11.1
Q ss_pred HhCCCchhhhhhHHHHH
Q 024166 208 IFTKPLTEQHGTGLLLI 224 (271)
Q Consensus 208 ~f~e~~s~~~~~G~~lv 224 (271)
+||-.+...+..|..+.
T Consensus 64 ~fgIsl~af~IaGGiiL 80 (203)
T PF01914_consen 64 FFGISLPAFRIAGGIIL 80 (203)
T ss_pred HhCCCHHHHHHHHHHHH
Confidence 56667777777776543
No 209
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=29.98 E-value=5e+02 Score=24.86 Aligned_cols=52 Identities=10% Similarity=-0.005 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHH-----HHhCCCchhhhhhHHHHH
Q 024166 173 IGQVSVLSLIALFGAAT----TAMVTTARKAVTLLLSY-----LIFTKPLTEQHGTGLLLI 224 (271)
Q Consensus 173 ~~~~~~~~~i~~~~a~~----~si~~~l~~v~~~lls~-----~~f~e~~s~~~~~G~~lv 224 (271)
+.....-.=+...+|.. .+....+--..+.+++. -++|++-+|..+.+.-++
T Consensus 132 l~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i 192 (485)
T KOG0569|consen 132 LSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLI 192 (485)
T ss_pred HHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHH
Confidence 44433333344555542 33333333344444442 466777777777776554
No 210
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=29.91 E-value=81 Score=17.60 Aligned_cols=17 Identities=29% Similarity=0.231 Sum_probs=9.9
Q ss_pred CchhhhhhHHHHHHHHH
Q 024166 212 PLTEQHGTGLLLIAMGI 228 (271)
Q Consensus 212 ~~s~~~~~G~~lvl~Gv 228 (271)
.-++..++|+.++..+.
T Consensus 9 ~~~~~~~~G~~l~~~~~ 25 (34)
T TIGR01167 9 GNSLLLLLGLLLLGLGG 25 (34)
T ss_pred ccHHHHHHHHHHHHHHH
Confidence 44666777875544443
No 211
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=29.30 E-value=9.1 Score=23.52 Aligned_cols=14 Identities=21% Similarity=0.121 Sum_probs=5.5
Q ss_pred hhhhhHHHHHHHHH
Q 024166 215 EQHGTGLLLIAMGI 228 (271)
Q Consensus 215 ~~~~~G~~lvl~Gv 228 (271)
|..++=.++++.|+
T Consensus 4 wlt~iFsvvIil~I 17 (49)
T PF11044_consen 4 WLTTIFSVVIILGI 17 (49)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333444443
No 212
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=29.13 E-value=18 Score=32.01 Aligned_cols=17 Identities=18% Similarity=0.294 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHhcc
Q 024166 218 GTGLLLIAMGITLKLLP 234 (271)
Q Consensus 218 ~~G~~lvl~Gv~l~~~~ 234 (271)
.++.++++..+..|..-
T Consensus 67 ~~a~~i~i~~~~~~~~l 83 (309)
T PF01733_consen 67 IIAVLIVILCIILYFIL 83 (309)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 44555555555555443
No 213
>COG1422 Predicted membrane protein [Function unknown]
Probab=28.83 E-value=42 Score=27.89 Aligned_cols=22 Identities=18% Similarity=0.123 Sum_probs=14.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHH
Q 024166 185 FGAATTAMVTTARKAVTLLLSY 206 (271)
Q Consensus 185 ~~a~~~si~~~l~~v~~~lls~ 206 (271)
+|+..-++.+.+..++..+++.
T Consensus 22 ~~~~~~~i~~~ln~~f~P~i~~ 43 (201)
T COG1422 22 FSSIRDGIGGALNVVFGPLLSP 43 (201)
T ss_pred hHHHHHHHHHHHHHHHhhhccc
Confidence 4466666667776667666665
No 214
>PRK00052 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=28.73 E-value=45 Score=29.08 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=19.5
Q ss_pred chhhhhhHHHHHHHHHHHHhccC
Q 024166 213 LTEQHGTGLLLIAMGITLKLLPA 235 (271)
Q Consensus 213 ~s~~~~~G~~lvl~Gv~l~~~~k 235 (271)
+|..|++++.+++.|+.+..+.+
T Consensus 237 ls~~Q~isl~~~~~gi~~~~~~~ 259 (269)
T PRK00052 237 LTMGQILSIPMILLGIILLIWAY 259 (269)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999998776553
No 215
>PRK12437 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=28.71 E-value=51 Score=28.75 Aligned_cols=23 Identities=26% Similarity=0.257 Sum_probs=19.0
Q ss_pred CchhhhhhHHHHHHHHHHHHhcc
Q 024166 212 PLTEQHGTGLLLIAMGITLKLLP 234 (271)
Q Consensus 212 ~~s~~~~~G~~lvl~Gv~l~~~~ 234 (271)
.+|..|+++..+++.|+.+..+.
T Consensus 234 ~ls~~Q~~sl~~i~~g~~~~~~~ 256 (269)
T PRK12437 234 WLRIAQVISIPLIIIGIILIIYR 256 (269)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHH
Confidence 37999999999999998776543
No 216
>TIGR02830 spore_III_AG stage III sporulation protein AG. CC A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is found in a spore formation operon and is designated stage III sporulation protein AG.
Probab=28.49 E-value=60 Score=26.76 Aligned_cols=15 Identities=27% Similarity=0.270 Sum_probs=9.0
Q ss_pred hhhhHHHHHHHHHHH
Q 024166 216 QHGTGLLLIAMGITL 230 (271)
Q Consensus 216 ~~~~G~~lvl~Gv~l 230 (271)
..++|++|++++..+
T Consensus 9 l~l~GvlLli~s~~f 23 (186)
T TIGR02830 9 LLLIGLLLLIVSSFF 23 (186)
T ss_pred HHHHHHHHHHhhccc
Confidence 346677776666543
No 217
>COG5062 Uncharacterized membrane protein [Function unknown]
Probab=28.40 E-value=3e+02 Score=25.26 Aligned_cols=38 Identities=18% Similarity=0.181 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhccCCCCccccc-ccCCCccceeccccc
Q 024166 221 LLLIAMGITLKLLPADDKPIKRT-ATSSFKVNIRKLSFS 258 (271)
Q Consensus 221 ~~lvl~Gv~l~~~~k~~~~~~~~-~~~~~~~~~~~~~~~ 258 (271)
..+++.|.+---+.+.+++..++ .++.+++-.+++++|
T Consensus 68 l~lcll~fl~~f~~~lrkP~n~~~~~~kp~~~t~~~q~~ 106 (429)
T COG5062 68 LFLCLLGFLFLFWRRLRKPVNPGNPSSKPKQSTDAPQDD 106 (429)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCCcccCccccccCcccc
Confidence 44677776554455556665532 223444444444433
No 218
>TIGR02205 septum_zipA cell division protein ZipA. This model represents the full length of bacterial cell division protein ZipA. The N-terminal hydrophobic stretch is an uncleaved signal-anchor sequence. This is followed by an unconserved, variable length, low complexity region, and then a conserved C-terminal region of about 140 amino acids (see pfam04354) that interacts with the tubulin-like cell division protein FtsZ.
Probab=28.25 E-value=53 Score=29.03 Aligned_cols=20 Identities=20% Similarity=0.165 Sum_probs=12.6
Q ss_pred hhHHHHHHHHHHHHhccCCCC
Q 024166 218 GTGLLLIAMGITLKLLPADDK 238 (271)
Q Consensus 218 ~~G~~lvl~Gv~l~~~~k~~~ 238 (271)
++| ++.++++++..+++.++
T Consensus 8 IvG-aiaI~aLl~hGlwt~Rk 27 (284)
T TIGR02205 8 IVG-ILAIAALLFHGLWTSRK 27 (284)
T ss_pred HHH-HHHHHHHHHcccccccc
Confidence 444 45667777777776544
No 219
>PF10710 DUF2512: Protein of unknown function (DUF2512); InterPro: IPR019649 Proteins in this entry are predicted to be integral membrane proteins, and many of them are annotated as being YndM protein. They are all found in Firmicutes. The true function is not known.
Probab=28.13 E-value=2.9e+02 Score=21.49 Aligned_cols=37 Identities=8% Similarity=0.098 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHH
Q 024166 165 VFEAMATFIGQVSV-LSLIALFGAATTAMVTTARKAVT 201 (271)
Q Consensus 165 ~l~~~~~~~~~~~~-~~~i~~~~a~~~si~~~l~~v~~ 201 (271)
..+.+.+.++|..- -..+.|+|...+++.-..--...
T Consensus 35 ~~sl~ltvvaY~iGDl~ILPr~gN~~AtiaD~~La~~~ 72 (136)
T PF10710_consen 35 LISLVLTVVAYLIGDLFILPRTGNIVATIADFGLAFLV 72 (136)
T ss_pred HHHHHHHHHHHHHHHHheeeCCCChhHHHHHHHHHHHH
Confidence 33334445555332 45667777777666655533333
No 220
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=28.13 E-value=46 Score=29.32 Aligned_cols=38 Identities=18% Similarity=0.245 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhccCCCCcccccccCCCccceecccc-ccchhhhhhhcCC
Q 024166 222 LLIAMGITLKLLPADDKPIKRTATSSFKVNIRKLSF-SEREEADEEKRAP 270 (271)
Q Consensus 222 ~lvl~Gv~l~~~~k~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 270 (271)
++++.|++++-..|++++..+ +|+. .=||+|+-++.||
T Consensus 243 ll~l~Gii~~~~~r~~~~~~~-----------~p~~~~~d~~~~~~~vpP 281 (281)
T PF12768_consen 243 LLVLIGIILAYIRRRRQGYVP-----------APTSPRIDEDEMMQRVPP 281 (281)
T ss_pred HHHHHHHHHHHHHhhhccCcC-----------CCcccccCcccccccCCC
Confidence 456777777665554443332 1121 2345566666665
No 221
>PF15108 TMEM37: Voltage-dependent calcium channel gamma-like subunit protein family
Probab=27.96 E-value=3.2e+02 Score=21.96 Aligned_cols=69 Identities=10% Similarity=0.230 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHhcc---CCCCCCCchHHHHHHHHHHHHHH-HhhHhHHHHHHhhCCCCChhhHHHHHHHhhH
Q 024166 65 VSALLLVVGLILFTLA---DAQTSPNFSMIGVIMISGALIMD-SFLGNLQEAIFTMNPETTQMEMLFCSTVVGL 134 (271)
Q Consensus 65 l~~~l~~~Gv~v~~~~---~~~~~~~~~~~G~~l~l~s~~~~-a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (271)
+++..++.|.=+.... +...+..-+..|-.+.+.|-++. +-...+. .+++.+.+...++++||+...+.
T Consensus 93 lAVV~AIFGLElLmvSQvcEd~~SrrKWamGs~LlLvsfvlSs~GllsFv-iLL~~~vtl~GFTL~fWCeFtAs 165 (184)
T PF15108_consen 93 LAVVVAIFGLELLMVSQVCEDAHSRRKWAMGSVLLLVSFVLSSGGLLSFV-ILLRNQVTLIGFTLMFWCEFTAS 165 (184)
T ss_pred HHHHHHHHhHHHHHHHHHHhcchhhhhhhhhhHHHHHHHHHhcccHHHHH-HHHhcchhhhhhHHHHHHHHHHH
Confidence 4555666665443321 11112235678888888775543 2222222 24444444445677888665443
No 222
>PF01528 Herpes_glycop: Herpesvirus glycoprotein M; InterPro: IPR000785 The Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) protein belongs to a family of sequences that groups together Human herpesvirus 1 (HHV-1) UL10, EHV-1 52, Human herpesvirus 3 (HHV-3) 50, Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4) BBRF3, Human herpesvirus 1 (HHV-1) 39 and Human cytomegalovirus (HHV-5) UL100. Little is yet known about the properties of the protein. However, its amino acid sequence is highly hydrophobic, containing 8 putative membrane-spanning regions, and it is therefore believed to be either membrane-associated or transmembrane.; GO: 0016020 membrane
Probab=27.85 E-value=19 Score=33.03 Aligned_cols=15 Identities=13% Similarity=0.383 Sum_probs=8.9
Q ss_pred chhhHHHHHHHHHHH
Q 024166 4 PWKTYVKLSAVLMGS 18 (271)
Q Consensus 4 ~~~~~~~~~~l~~~~ 18 (271)
.||.|...-+|+++.
T Consensus 10 ~~r~W~~~v~~~~l~ 24 (374)
T PF01528_consen 10 NWRIWLVQVACFVLM 24 (374)
T ss_pred HHHHHHHHHHHHHHH
Confidence 466666666666544
No 223
>PRK15049 L-asparagine permease; Provisional
Probab=27.60 E-value=75 Score=30.27 Aligned_cols=70 Identities=21% Similarity=0.040 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhccCCCCcccccccCCCccceeccccccchhhhhhhcCCC
Q 024166 192 MVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKPIKRTATSSFKVNIRKLSFSEREEADEEKRAPV 271 (271)
Q Consensus 192 i~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (271)
...+.--+...++-.+++--.....++.+.+.+..++++......+++|++ ++.+.+.+-|||+|+|-.|
T Consensus 423 p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~ 492 (499)
T PRK15049 423 PFTSWLTLLFLLSVLVLMAFDYPNGTYTIAALPIIGILLVIGWFGVRKRVA----------EIHSTAPVVEEDEEKQEIV 492 (499)
T ss_pred cHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHhcccc----------cccCCCCccccccccccee
No 224
>PF04145 Ctr: Ctr copper transporter family; InterPro: IPR007274 The redox active metal copper is an essential cofactor in critical biological processes such as respiration, iron transport, oxidative stress protection, hormone production, and pigmentation. A widely conserved family of high-affinity copper transport proteins (Ctr proteins) mediates copper uptake at the plasma membrane. A series of clustered methionine residues in the hydrophilic extracellular domain, and an MXXXM motif in the second transmembrane domain, are important for copper uptake. These methionines probably coordinate copper during the process of metal transport.; GO: 0005375 copper ion transmembrane transporter activity, 0035434 copper ion transmembrane transport, 0016021 integral to membrane; PDB: 2LS4_A 2LS2_A 2LS3_A.
Probab=26.46 E-value=37 Score=26.12 Aligned_cols=10 Identities=10% Similarity=0.052 Sum_probs=3.7
Q ss_pred hhhhhhHHHH
Q 024166 214 TEQHGTGLLL 223 (271)
Q Consensus 214 s~~~~~G~~l 223 (271)
|..+.+|..+
T Consensus 23 s~~~~~~sci 32 (144)
T PF04145_consen 23 SAGAYVGSCI 32 (144)
T ss_dssp --HHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 4444444433
No 225
>PF09050 SNN_linker: Stannin unstructured linker; InterPro: IPR015136 This entry represents an unstructured protein region which connects two adjacent stannin helical domains. It contains a conserved CXC metal-binding motif and a putative 14-3-3-zeta binding domain. Upon coordinating dimethytin, considerable structural or dynamic changes in the flexible loop region of SNN may take place, recruiting other binding partners such as 14-3-3-zeta, and thereby initiating the apoptotic cascade []. ; PDB: 1ZZA_A.
Probab=26.23 E-value=29 Score=18.26 Aligned_cols=11 Identities=45% Similarity=0.619 Sum_probs=3.0
Q ss_pred eccccccchhh
Q 024166 253 RKLSFSEREEA 263 (271)
Q Consensus 253 ~~~~~~~~~~~ 263 (271)
++.+++||||+
T Consensus 6 qr~sqsedees 16 (26)
T PF09050_consen 6 QRISQSEDEES 16 (26)
T ss_dssp -SS-SS---TT
T ss_pred hhhccccchhh
Confidence 34455555554
No 226
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.94 E-value=29 Score=33.94 Aligned_cols=22 Identities=14% Similarity=-0.011 Sum_probs=14.4
Q ss_pred CCccceeccccccchhhhhhhc
Q 024166 247 SFKVNIRKLSFSEREEADEEKR 268 (271)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~ 268 (271)
....+.|.-+++|+++||||++
T Consensus 148 ~~~~~~eed~~~e~~~e~de~~ 169 (704)
T KOG2153|consen 148 RESDDDEEDLDEEDSDEDDETP 169 (704)
T ss_pred cccccchhcccchhcccccccc
Confidence 3344556677777777777765
No 227
>PRK10263 DNA translocase FtsK; Provisional
Probab=25.60 E-value=9.1e+02 Score=26.44 Aligned_cols=23 Identities=17% Similarity=0.281 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHH
Q 024166 170 ATFIGQVSVLSLIALFGAATTAM 192 (271)
Q Consensus 170 ~~~~~~~~~~~~i~~~~a~~~si 192 (271)
++++|..+........|..-+.+
T Consensus 143 GGIIG~lLs~lL~~LfG~vGa~L 165 (1355)
T PRK10263 143 GGVIGSLLSTTLQPLLHSSGGTI 165 (1355)
T ss_pred cchHHHHHHHHHHHHHhHHHHHH
Confidence 44555555544445455433333
No 228
>PF14880 COX14: Cytochrome oxidase c assembly
Probab=25.50 E-value=8.5 Score=25.34 Aligned_cols=25 Identities=16% Similarity=0.089 Sum_probs=18.1
Q ss_pred CCchhhhhhHHHHHHHHHHHHhccC
Q 024166 211 KPLTEQHGTGLLLIAMGITLKLLPA 235 (271)
Q Consensus 211 e~~s~~~~~G~~lvl~Gv~l~~~~k 235 (271)
++.+...++|..++.++...|+...
T Consensus 14 HR~tV~~Lig~T~~~g~~~~~~~y~ 38 (59)
T PF14880_consen 14 HRTTVLGLIGFTVYGGGLTVYTVYS 38 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667778888888877777776543
No 229
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=25.38 E-value=23 Score=31.30 Aligned_cols=50 Identities=16% Similarity=0.090 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHhccCCCCccccc---ccCCCccceeccccccchhhhh
Q 024166 216 QHGTGLLLIAMGITLKLLPADDKPIKRT---ATSSFKVNIRKLSFSEREEADE 265 (271)
Q Consensus 216 ~~~~G~~lvl~Gv~l~~~~k~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 265 (271)
.-++..+|+++|+++....|++++.|.. +++=-+..++..=.||=||+|.
T Consensus 152 aVVI~~iLLIA~iIa~icyrrkR~GK~~~ee~~~f~~KGiPvIF~dElee~kp 204 (290)
T PF05454_consen 152 AVVIAAILLIAGIIACICYRRKRKGKMSLEEQKTFISKGIPVIFQDELEESKP 204 (290)
T ss_dssp -----------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhccccccchhHHHHhcCCceeccccccccCC
Confidence 3444555556666555444433333322 2222224456666666666444
No 230
>KOG1607 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.29 E-value=76 Score=28.49 Aligned_cols=28 Identities=14% Similarity=-0.000 Sum_probs=16.7
Q ss_pred HHHHHhCCCchhhhhhHHHHHHHHHHHH
Q 024166 204 LSYLIFTKPLTEQHGTGLLLIAMGITLK 231 (271)
Q Consensus 204 ls~~~f~e~~s~~~~~G~~lvl~Gv~l~ 231 (271)
.+.-..+++++........+.+..+-+|
T Consensus 249 ~~~~~~~~~~~~~~~~~lL~~Lqll~i~ 276 (318)
T KOG1607|consen 249 FSLRQYQPKPSYYFFNCLLLALQLLHIY 276 (318)
T ss_pred HHhhccCCCchHHHHHHHHHHHHHHHHH
Confidence 4444556777777776666665554444
No 231
>COG1971 Predicted membrane protein [Function unknown]
Probab=25.04 E-value=1.6e+02 Score=24.44 Aligned_cols=39 Identities=15% Similarity=0.233 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCchhhhhhHHH-HHHHHHH
Q 024166 191 AMVTTARKAVTLLLSYLIFTKPLTEQHGTGLL-LIAMGIT 229 (271)
Q Consensus 191 si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~-lvl~Gv~ 229 (271)
+++..+.|+.....+.++=+..-.+.+|+|.+ +.+.|..
T Consensus 44 G~f~~i~pliG~~~g~~~s~~i~~~~~wigf~lL~~lG~~ 83 (190)
T COG1971 44 GVFQAIMPLIGWFIGKFLSTFIAEWAHWIGFVLLIILGLK 83 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555544444677877764 4666654
No 232
>PF03773 DUF318: Predicted permease; InterPro: IPR005524 This family of predicted integral membrane proteins.
Probab=24.90 E-value=1.7e+02 Score=25.95 Aligned_cols=41 Identities=20% Similarity=0.164 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhCCCchhhhhhHHHH--HHHHHHHHhccCCC
Q 024166 197 RKAVTLLLSYLIFTKPLTEQHGTGLLL--IAMGITLKLLPADD 237 (271)
Q Consensus 197 ~~v~~~lls~~~f~e~~s~~~~~G~~l--vl~Gv~l~~~~k~~ 237 (271)
-.+..++..+..+|-+++....++... ++.|.....+.+++
T Consensus 96 ~n~~~~~~~~~~lg~~~~~~r~~~~~~~~~~~g~l~~~~~~~~ 138 (307)
T PF03773_consen 96 LNPIVLLLTWAALGWKFTLIRIVLGLILAILVGLLFSRLFKRR 138 (307)
T ss_pred hhHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 344666777788888888777776644 45565555555544
No 233
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=24.69 E-value=1.2e+02 Score=22.32 Aligned_cols=13 Identities=15% Similarity=0.235 Sum_probs=8.1
Q ss_pred hhhhhhHHHHHHH
Q 024166 214 TEQHGTGLLLIAM 226 (271)
Q Consensus 214 s~~~~~G~~lvl~ 226 (271)
+|..++|+++...
T Consensus 16 sW~~LVGVv~~al 28 (102)
T PF15176_consen 16 SWPFLVGVVVTAL 28 (102)
T ss_pred ccHhHHHHHHHHH
Confidence 6667777765433
No 234
>COG5505 Predicted integral membrane protein [Function unknown]
Probab=24.30 E-value=5.3e+02 Score=23.28 Aligned_cols=41 Identities=17% Similarity=0.241 Sum_probs=24.0
Q ss_pred HhhcccHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024166 141 MLLTGELFKAWNSCSQHLYVYGVLVFEAMATFIGQVSVLSLIAL 184 (271)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~i~~ 184 (271)
+++.=|+.+. +...+......+...++.++|+..++-.+|.
T Consensus 73 mLlqcd~Rki---~Klg~rll~ifli~sv~~vlGfIl~yp~~ks 113 (384)
T COG5505 73 MLLQCDVRKI---FKLGRRLLFIFLISSVGTVLGFILAYPLLKS 113 (384)
T ss_pred HHHHccHHHH---HhhcchhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444454443 2335554455556668888888887666654
No 235
>PF05313 Pox_P21: Poxvirus P21 membrane protein; InterPro: IPR007977 The p21 membrane protein of vaccinia virus, encoded by the A17L (or A18L) gene, has been reported to localise on the inner of the two membranes of the intracellular mature virus (IMV). It has also been shown that p21 acts as a membrane anchor for the externally located fusion protein P14 (A27L gene) [].; GO: 0016021 integral to membrane
Probab=24.29 E-value=3.4e+02 Score=22.30 Aligned_cols=51 Identities=12% Similarity=0.022 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhccCCCCccc
Q 024166 190 TAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKPIK 241 (271)
Q Consensus 190 ~si~~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~k~~~~~~ 241 (271)
.+++..+-.++++++..+-.....+... -.+..++.+++.++..++++.+.
T Consensus 119 MsIvcv~~Si~ti~~~~~s~s~~~~ti~-yIiL~iLf~~Ya~nl~~~~~~~~ 169 (189)
T PF05313_consen 119 MSIVCVIMSIITIIVNSVSGSSGAYTIS-YIILAILFCIYAFNLTGRSRIRS 169 (189)
T ss_pred hHHHHHHHHHHHHHHHhhhHhHHHHHHH-HHHHHHHHHHheeeccchhhccc
Confidence 4454444445554444433212111111 12344677777777666555443
No 236
>PHA03237 envelope glycoprotein M; Provisional
Probab=23.69 E-value=45 Score=31.18 Aligned_cols=15 Identities=13% Similarity=0.368 Sum_probs=9.7
Q ss_pred chhhHHHHHHHHHHH
Q 024166 4 PWKTYVKLSAVLMGS 18 (271)
Q Consensus 4 ~~~~~~~~~~l~~~~ 18 (271)
.||.|....+|+++.
T Consensus 21 ~~r~W~~qv~~f~l~ 35 (424)
T PHA03237 21 HWRLWLVQVACFALA 35 (424)
T ss_pred hHHHHHHHHHHHHHH
Confidence 467777766666554
No 237
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=23.65 E-value=26 Score=33.83 Aligned_cols=22 Identities=27% Similarity=0.387 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhccCCCCcc
Q 024166 219 TGLLLIAMGITLKLLPADDKPI 240 (271)
Q Consensus 219 ~G~~lvl~Gv~l~~~~k~~~~~ 240 (271)
.|..+.+.++-+....|+.++.
T Consensus 235 ~g~~~~l~aipl~~FPk~lp~~ 256 (539)
T PF03137_consen 235 CGILLFLSAIPLFFFPKKLPGT 256 (539)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHcCCccCCCc
Confidence 4555667777777777776666
No 238
>PRK13955 mscL large-conductance mechanosensitive channel; Provisional
Probab=23.46 E-value=1.4e+02 Score=23.06 Aligned_cols=20 Identities=0% Similarity=0.062 Sum_probs=8.7
Q ss_pred hhhhhhHHHH--HHHHHHHHhc
Q 024166 214 TEQHGTGLLL--IAMGITLKLL 233 (271)
Q Consensus 214 s~~~~~G~~l--vl~Gv~l~~~ 233 (271)
....++..++ ++.+..+|..
T Consensus 65 ~yG~fl~avInFlIiA~vvF~i 86 (130)
T PRK13955 65 MYGNFIQTIFDFLIIAASIFMF 86 (130)
T ss_pred eHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444433 3444444443
No 239
>COG1288 Predicted membrane protein [Function unknown]
Probab=23.32 E-value=1.1e+02 Score=28.78 Aligned_cols=19 Identities=5% Similarity=-0.006 Sum_probs=10.4
Q ss_pred CCchhhhhhHHHHHHHHHH
Q 024166 211 KPLTEQHGTGLLLIAMGIT 229 (271)
Q Consensus 211 e~~s~~~~~G~~lvl~Gv~ 229 (271)
|-+.++-..=+..++.++.
T Consensus 214 sG~~~Riv~~v~~~~~~i~ 232 (481)
T COG1288 214 SGMGLRIVVWVVFTLISII 232 (481)
T ss_pred ccchHHHHHHHHHHHHHHH
Confidence 4555555555555566654
No 240
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=23.32 E-value=75 Score=22.74 Aligned_cols=37 Identities=5% Similarity=-0.013 Sum_probs=18.3
Q ss_pred chhhhhhHHHHHHHHHHHHhccCCCCcccccccCCCcc
Q 024166 213 LTEQHGTGLLLIAMGITLKLLPADDKPIKRTATSSFKV 250 (271)
Q Consensus 213 ~s~~~~~G~~lvl~Gv~l~~~~k~~~~~~~~~~~~~~~ 250 (271)
+++...+|+++++.=+++....|+++. +++.-++...
T Consensus 35 m~~lvI~~iFil~VilwfvCC~kRkrs-RrPIYrPvI~ 71 (94)
T PF05393_consen 35 MWFLVICGIFILLVILWFVCCKKRKRS-RRPIYRPVIG 71 (94)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhc-cCCccccccc
Confidence 355666666555555555554444443 3333443333
No 241
>PF08592 DUF1772: Domain of unknown function (DUF1772); InterPro: IPR013901 This entry represents proteins of unknown function.
Probab=23.24 E-value=3e+02 Score=20.65 Aligned_cols=30 Identities=7% Similarity=-0.079 Sum_probs=19.0
Q ss_pred CCchhhhhhHHHHHHHHHHHHhccCCCCcc
Q 024166 211 KPLTEQHGTGLLLIAMGITLKLLPADDKPI 240 (271)
Q Consensus 211 e~~s~~~~~G~~lvl~Gv~l~~~~k~~~~~ 240 (271)
++-....+++.++.+.|+..+...-..+.+
T Consensus 61 ~~~~~~~~~~a~~~~~~~~~~T~~~~~P~N 90 (139)
T PF08592_consen 61 RPAARLLWLAAAALLLSIIPFTFLVNVPIN 90 (139)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 455666677777777777777655444433
No 242
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=22.89 E-value=6.4e+02 Score=23.69 Aligned_cols=45 Identities=18% Similarity=0.148 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 024166 165 VFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIF 209 (271)
Q Consensus 165 ~l~~~~~~~~~~~~~~~i~~~~a~~~si~~~l~~v~~~lls~~~f 209 (271)
.++.+++..+...+-...+++|...++..+..-......++...+
T Consensus 300 ~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~ 344 (432)
T PF06963_consen 300 GLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSF 344 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHH
Confidence 455677788889999999999999999999887766655555333
No 243
>KOG1834 consensus Calsyntenin [Extracellular structures]
Probab=22.76 E-value=60 Score=32.06 Aligned_cols=6 Identities=17% Similarity=1.027 Sum_probs=2.7
Q ss_pred HHHHHH
Q 024166 223 LIAMGI 228 (271)
Q Consensus 223 lvl~Gv 228 (271)
+++.|+
T Consensus 843 mvvlGv 848 (952)
T KOG1834|consen 843 MVVLGV 848 (952)
T ss_pred HHHHhh
Confidence 344454
No 244
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=22.41 E-value=6e+02 Score=23.17 Aligned_cols=101 Identities=8% Similarity=-0.010 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHhhhHhhcCcchhHHHHH-hhcchHHHHHHHHhhcc-----cccccChhhHHHHHHHHHHHHHHhccC
Q 024166 8 YVKLSAVLMGSHGLTKGSLAFLNYPAQLMF-KSTKVLPVMVMGAFIPG-----LRRKYPAHEYVSALLLVVGLILFTLAD 81 (271)
Q Consensus 8 ~~~~~~l~~~~~~l~~~al~~~~~~~~~i~-~s~~pi~v~~~~~ll~~-----l~e~~~~~~~l~~~l~~~Gv~v~~~~~ 81 (271)
....+++.-++....-.+.+|+.++..+-+ .-+..++-.++-.+++| +.++-.+..+++++++++|+++.....
T Consensus 76 ~~l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG 155 (344)
T PF06379_consen 76 TFLFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAG 155 (344)
T ss_pred HHHHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHH
Confidence 344566666666777788888777554411 11111111122122210 233445677799999999999987642
Q ss_pred CCC--------CCCchHHHHHHHHHHHHHHHhhHh
Q 024166 82 AQT--------SPNFSMIGVIMISGALIMDSFLGN 108 (271)
Q Consensus 82 ~~~--------~~~~~~~G~~l~l~s~~~~a~~~v 108 (271)
... ++.+--.|.+.++++-++++..+.
T Consensus 156 ~~Ke~~~~~~~~efn~~kGl~iAv~sGv~Sa~fn~ 190 (344)
T PF06379_consen 156 SMKEKELGEEAKEFNFKKGLIIAVLSGVMSACFNF 190 (344)
T ss_pred HhhhhhhccchhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 211 112346899998888776666554
No 245
>PF12597 DUF3767: Protein of unknown function (DUF3767); InterPro: IPR022533 This group of proteins includes mitochodrial cytochrome c oxidase proteins [], and some transmembrane domain-containing proteins of unknown function known as FAM36A. Proteins in this family are typically between 112 and 199 amino acids in length.
Probab=22.33 E-value=14 Score=28.12 Aligned_cols=25 Identities=4% Similarity=-0.231 Sum_probs=10.4
Q ss_pred CCchhhhhhHHHHHHHHHHHHhccC
Q 024166 211 KPLTEQHGTGLLLIAMGITLKLLPA 235 (271)
Q Consensus 211 e~~s~~~~~G~~lvl~Gv~l~~~~k 235 (271)
......+|.-..++++++..+.+-+
T Consensus 64 ~~~~A~nwavgsF~l~s~~~we~Cr 88 (118)
T PF12597_consen 64 NPRKAANWAVGSFFLGSLGSWEYCR 88 (118)
T ss_pred CCccchhhhhHHHHHHHHHHHHHHH
Confidence 3344444444444444444443333
No 246
>PF03248 Rer1: Rer1 family; InterPro: IPR004932 RER1 family proteins are involved in involved in the retrieval of some endoplasmic reticulum membrane proteins from the early golgi compartment. The C terminus of yeast Rer1p interacts with a coatomer complex [].; GO: 0016021 integral to membrane
Probab=21.73 E-value=43 Score=27.35 Aligned_cols=11 Identities=36% Similarity=0.492 Sum_probs=7.3
Q ss_pred hhhhhhhcCCC
Q 024166 261 EEADEEKRAPV 271 (271)
Q Consensus 261 ~~~~~~~~~~~ 271 (271)
+++|||-+|.+
T Consensus 92 ~~~~~EFrPFi 102 (176)
T PF03248_consen 92 NENDDEFRPFI 102 (176)
T ss_pred cccccccCCcc
Confidence 46677777753
No 247
>COG3366 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.63 E-value=3.4e+02 Score=24.36 Aligned_cols=34 Identities=12% Similarity=-0.002 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHH
Q 024166 197 RKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITL 230 (271)
Q Consensus 197 ~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l 230 (271)
-|+...++|+..-..-......++..-.+.|+.+
T Consensus 109 ~Pv~lpiLG~~~GliYv~i~~~va~~~tlig~l~ 142 (311)
T COG3366 109 APVALPILGLELGLIYVGIRVLVALLKTLIGVLY 142 (311)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555444455567777888888888833
No 248
>PF11027 DUF2615: Protein of unknown function (DUF2615); InterPro: IPR020309 This entry represents a group of uncharacterised protein from the Metazoa, including CD034 (or C4orf34) and YQF4 (or C34C12.4).
Probab=21.50 E-value=1.5e+02 Score=21.92 Aligned_cols=20 Identities=20% Similarity=0.288 Sum_probs=13.1
Q ss_pred hhhHHHHHHHHHHHHhccCC
Q 024166 217 HGTGLLLIAMGITLKLLPAD 236 (271)
Q Consensus 217 ~~~G~~lvl~Gv~l~~~~k~ 236 (271)
.++-++.++.++++|..+.+
T Consensus 56 ~~~~~~w~~~A~~ly~~RP~ 75 (103)
T PF11027_consen 56 FMMMMLWMVLAMALYLLRPS 75 (103)
T ss_pred HHHHHHHHHHHHHHHHcCch
Confidence 44556667777888876544
No 249
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=21.48 E-value=2.6e+02 Score=20.90 Aligned_cols=60 Identities=18% Similarity=0.076 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHh
Q 024166 173 IGQVSVLSLIALFGAATTAMV-TTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKL 232 (271)
Q Consensus 173 ~~~~~~~~~i~~~~a~~~si~-~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~ 232 (271)
.+...|+..+++.+-+.+..+ ..+.-.++...+...-.|.-.-..+.|..+++.|+.+..
T Consensus 64 cgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lci 124 (125)
T KOG4831|consen 64 CGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLCI 124 (125)
T ss_pred hhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhee
Confidence 344556666777665554333 334455666777666555667788999999999987653
No 250
>PF09534 Trp_oprn_chp: Tryptophan-associated transmembrane protein (Trp_oprn_chp); InterPro: IPR019051 Members of this family are predicted transmembrane proteins with four membrane-spanning helices. Members are found in the Actinobacteria (Mycobacterium, Corynebacterium, Streptomyces), always associated with genes for tryptophan biosynthesis.
Probab=21.38 E-value=1.3e+02 Score=24.75 Aligned_cols=21 Identities=24% Similarity=0.135 Sum_probs=10.8
Q ss_pred hhhhHH-HHHHHHHHHHhccCC
Q 024166 216 QHGTGL-LLIAMGITLKLLPAD 236 (271)
Q Consensus 216 ~~~~G~-~lvl~Gv~l~~~~k~ 236 (271)
...+|. .+++.|+.+....++
T Consensus 125 la~~gg~l~~~agvl~~~~~~~ 146 (189)
T PF09534_consen 125 LALAGGVLALAAGVLLARRGRR 146 (189)
T ss_pred HHHHHHHHHHHHHHHHHHhcCC
Confidence 344454 445566665555443
No 251
>PRK12933 secD preprotein translocase subunit SecD; Reviewed
Probab=20.50 E-value=7.2e+02 Score=24.62 Aligned_cols=39 Identities=23% Similarity=0.232 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHh-CCCchhhhhhHHHHHHHHHHHH
Q 024166 192 MVTTARKAVTLLLSYLIF-TKPLTEQHGTGLLLIAMGITLK 231 (271)
Q Consensus 192 i~~~l~~v~~~lls~~~f-~e~~s~~~~~G~~lvl~Gv~l~ 231 (271)
.+...-.++.++..+.++ |-++|...+.|+++++ |+.+.
T Consensus 469 ~iAL~~~l~l~l~vmsll~G~tLtLpgIAGiILtI-GmaVD 508 (604)
T PRK12933 469 NVALIANMVCLFGLLALIPGAVLTLPGIAGLVLTV-GMAVD 508 (604)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHH-Hhhcc
Confidence 344444445555555555 8999999999999887 66654
No 252
>COG2116 FocA Formate/nitrite family of transporters [Inorganic ion transport and metabolism]
Probab=20.23 E-value=5.9e+02 Score=22.28 Aligned_cols=27 Identities=15% Similarity=0.090 Sum_probs=17.3
Q ss_pred CchhhhhhHHHHHHHHHHHHhccCCCC
Q 024166 212 PLTEQHGTGLLLIAMGITLKLLPADDK 238 (271)
Q Consensus 212 ~~s~~~~~G~~lvl~Gv~l~~~~k~~~ 238 (271)
+.+..+.+|..+.+.-.+.+.++|+++
T Consensus 236 pv~lGNivGG~v~vgl~Y~~~~~~~~~ 262 (265)
T COG2116 236 PVTLGNIVGGAVFVGLMYWYLYRKQNR 262 (265)
T ss_pred HHHHhchhcchhhhhHHHHHhcccccc
Confidence 445666778777777666666555443
No 253
>PF11714 Inhibitor_I53: Thrombin inhibitor Madanin ; InterPro: IPR021716 Members of this family are the peptidase inhibitor madanin proteins. These proteins were isolated from tick saliva [].
Probab=20.00 E-value=82 Score=21.41 Aligned_cols=13 Identities=15% Similarity=0.084 Sum_probs=7.0
Q ss_pred cccchhhhhhhcC
Q 024166 257 FSEREEADEEKRA 269 (271)
Q Consensus 257 ~~~~~~~~~~~~~ 269 (271)
.|.+|.++||+-|
T Consensus 49 adyd~yd~~~TT~ 61 (78)
T PF11714_consen 49 ADYDEYDQDETTP 61 (78)
T ss_pred cccccccccCCcC
Confidence 3455555566544
Done!