Query 024166
Match_columns 271
No_of_seqs 110 out of 1067
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 03:31:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024166.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024166hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 99.0 8.7E-10 3E-14 85.3 7.0 71 165-235 34-105 (137)
2 3b5d_A Multidrug transporter E 98.5 9.2E-07 3.2E-11 65.7 10.4 70 166-235 35-105 (110)
3 3b5d_A Multidrug transporter E 98.4 1.4E-06 4.6E-11 64.8 8.5 72 8-81 33-105 (110)
4 2i68_A Protein EMRE; transmemb 98.2 1.6E-06 5.5E-11 66.9 5.4 70 10-81 35-105 (137)
5 3rko_J NADH-quinone oxidoreduc 58.0 67 0.0023 25.3 9.4 25 202-226 127-151 (184)
6 2l2t_A Receptor tyrosine-prote 55.4 12 0.00042 22.2 3.1 11 224-234 26-36 (44)
7 4djk_A Probable glutamate/gamm 46.4 23 0.0008 31.9 5.1 20 219-238 450-469 (511)
8 3l1l_A Arginine/agmatine antip 39.2 32 0.0011 30.2 4.8 25 216-240 409-433 (445)
9 2b6o_A Aquaporin-0, lens fiber 38.9 16 0.00055 30.6 2.5 21 214-234 201-222 (263)
10 3izc_W 60S ribosomal protein R 33.4 9.5 0.00032 28.0 0.1 13 254-266 109-121 (121)
11 2jln_A MHP1; hydantoin, transp 29.6 62 0.0021 29.5 5.1 19 190-208 364-382 (501)
12 3d9s_A Aquaporin-5, AQP-5; aqu 21.6 49 0.0017 27.6 2.5 21 214-234 204-225 (266)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.98 E-value=8.7e-10 Score=85.34 Aligned_cols=71 Identities=17% Similarity=0.158 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhccC
Q 024166 165 VFEAMATFIGQVSVLSLIALFGAATTAMV-TTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPA 235 (271)
Q Consensus 165 ~l~~~~~~~~~~~~~~~i~~~~a~~~si~-~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~k 235 (271)
++..+++++++.++.+++++.++..+..+ ..+.|++++++|+++|||++|+.+++|+++++.|+++....+
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 34456778999999999999999988887 899999999999999999999999999999999999887543
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.52 E-value=9.2e-07 Score=65.74 Aligned_cols=70 Identities=16% Similarity=0.144 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHHHHHhccC
Q 024166 166 FEAMATFIGQVSVLSLIALFGAATTAMV-TTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPA 235 (271)
Q Consensus 166 l~~~~~~~~~~~~~~~i~~~~a~~~si~-~~l~~v~~~lls~~~f~e~~s~~~~~G~~lvl~Gv~l~~~~k 235 (271)
+..++..+++.++.+++|+.+...+..+ ..+.|+.+.++++++|||++|+.+++|+.+++.|+......+
T Consensus 35 ~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3445667888899999999999998777 899999999999999999999999999999999999887543
No 3
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.39 E-value=1.4e-06 Score=64.82 Aligned_cols=72 Identities=11% Similarity=0.187 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHhhhHhhcCcchhHHHHH-hhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhccC
Q 024166 8 YVKLSAVLMGSHGLTKGSLAFLNYPAQLMF-KSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLAD 81 (271)
Q Consensus 8 ~~~~~~l~~~~~~l~~~al~~~~~~~~~i~-~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~ 81 (271)
.....+++.++..+...++++.|.+.+..+ ....|+.++++++++ +||++++.+++++.++++|+.++...+
T Consensus 33 ~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~--~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 33 SVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGF--FGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHH--hCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 334444667788899999999999998877 899999999999999 999999999999999999999987654
No 4
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.20 E-value=1.6e-06 Score=66.90 Aligned_cols=70 Identities=10% Similarity=0.185 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHhhhHhhcCcchhHHHHH-hhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHHhccC
Q 024166 10 KLSAVLMGSHGLTKGSLAFLNYPAQLMF-KSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLAD 81 (271)
Q Consensus 10 ~~~~l~~~~~~l~~~al~~~~~~~~~i~-~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~v~~~~~ 81 (271)
.-.+++.++..+.+.++++++.+.+..+ ....|++++++++++ ++|+++..+++|++++++|+.++...+
T Consensus 35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~--lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGF--FGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHH--HC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHH--hCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3345677889999999999999977777 899999999999999 999999999999999999999987644
No 5
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=58.01 E-value=67 Score=25.28 Aligned_cols=25 Identities=16% Similarity=0.141 Sum_probs=20.0
Q ss_pred HHHHHHHhCCCchhhhhhHHHHHHH
Q 024166 202 LLLSYLIFTKPLTEQHGTGLLLIAM 226 (271)
Q Consensus 202 ~lls~~~f~e~~s~~~~~G~~lvl~ 226 (271)
--+|..+|++.+=+....|+.+..+
T Consensus 127 ~~iG~~Lft~Y~lpFElaSvlLLvA 151 (184)
T 3rko_J 127 KAVGITLFGPYVLAVELASMLLLAG 151 (184)
T ss_dssp HHHHHHHTTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577888999999999999987543
No 6
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=55.45 E-value=12 Score=22.22 Aligned_cols=11 Identities=0% Similarity=0.163 Sum_probs=4.1
Q ss_pred HHHHHHHHhcc
Q 024166 224 IAMGITLKLLP 234 (271)
Q Consensus 224 vl~Gv~l~~~~ 234 (271)
+..+.++|.+.
T Consensus 26 i~~~~~~~~RR 36 (44)
T 2l2t_A 26 VGLTFAVYVRR 36 (44)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHhhh
Confidence 33333344433
No 7
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=46.41 E-value=23 Score=31.90 Aligned_cols=20 Identities=15% Similarity=0.370 Sum_probs=8.6
Q ss_pred hHHHHHHHHHHHHhccCCCC
Q 024166 219 TGLLLIAMGITLKLLPADDK 238 (271)
Q Consensus 219 ~G~~lvl~Gv~l~~~~k~~~ 238 (271)
.+..+++.++.++.+.++++
T Consensus 450 ~~~~~~~~~i~~~~~~~~~~ 469 (511)
T 4djk_A 450 VVSFLVVLALPFILYAVHDR 469 (511)
T ss_dssp HHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 34444555555555444333
No 8
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=39.24 E-value=32 Score=30.23 Aligned_cols=25 Identities=4% Similarity=-0.106 Sum_probs=17.9
Q ss_pred hhhhHHHHHHHHHHHHhccCCCCcc
Q 024166 216 QHGTGLLLIAMGITLKLLPADDKPI 240 (271)
Q Consensus 216 ~~~~G~~lvl~Gv~l~~~~k~~~~~ 240 (271)
..+.|..+++.|+.+|.+.++++++
T Consensus 409 ~~~~~~~~~~~g~~~y~~~~~~~~~ 433 (445)
T 3l1l_A 409 EVMWSFVTLMVITAMYALNYNRLHK 433 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccc
Confidence 4556888889999888876655443
No 9
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A*
Probab=38.90 E-value=16 Score=30.56 Aligned_cols=21 Identities=14% Similarity=0.006 Sum_probs=12.1
Q ss_pred hhhhhhHHHH-HHHHHHHHhcc
Q 024166 214 TEQHGTGLLL-IAMGITLKLLP 234 (271)
Q Consensus 214 s~~~~~G~~l-vl~Gv~l~~~~ 234 (271)
.|..|+|=.+ .+.|..+|...
T Consensus 201 ~Wvy~vgP~~Ga~la~~~y~~l 222 (263)
T 2b6o_A 201 HWVYWVGPVIGAGLGSLLYDFL 222 (263)
T ss_dssp CTHHHHHHHHHHHHHHHHHHTT
T ss_pred eeHHHHHHHHHHHHHHHHHHHH
Confidence 4566777655 44455566544
No 10
>3izc_W 60S ribosomal protein RPL22 (L22E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_W 3u5e_U 3u5i_U 4b6a_U
Probab=33.38 E-value=9.5 Score=27.95 Aligned_cols=13 Identities=46% Similarity=0.606 Sum_probs=0.8
Q ss_pred ccccccchhhhhh
Q 024166 254 KLSFSEREEADEE 266 (271)
Q Consensus 254 ~~~~~~~~~~~~~ 266 (271)
+..++|+||||||
T Consensus 109 ~I~~de~eee~e~ 121 (121)
T 3izc_W 109 QVTPEEDEEEDEE 121 (121)
T ss_dssp CC-----------
T ss_pred eeCCCcccccccC
Confidence 3445555555554
No 11
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=29.61 E-value=62 Score=29.47 Aligned_cols=19 Identities=5% Similarity=0.144 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024166 190 TAMVTTARKAVTLLLSYLI 208 (271)
Q Consensus 190 ~si~~~l~~v~~~lls~~~ 208 (271)
..+...+-|+.++.+.=.+
T Consensus 364 ~~lg~~l~P~~gI~l~Dy~ 382 (501)
T 2jln_A 364 NLLASALGPLAGIMISDYF 382 (501)
T ss_dssp HHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444566777777665444
No 12
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens}
Probab=21.63 E-value=49 Score=27.62 Aligned_cols=21 Identities=10% Similarity=0.026 Sum_probs=11.6
Q ss_pred hhhhhhHHHH-HHHHHHHHhcc
Q 024166 214 TEQHGTGLLL-IAMGITLKLLP 234 (271)
Q Consensus 214 s~~~~~G~~l-vl~Gv~l~~~~ 234 (271)
.|..|+|=.+ .+.|..+|...
T Consensus 204 ~Wvy~vgP~~Ga~la~~~y~~l 225 (266)
T 3d9s_A 204 HWVFWVGPIVGAVLAAILYFYL 225 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred EeeeehHHHHHHHHHHHHHHHH
Confidence 4566766555 44455566544
Done!