Query 024166
Match_columns 271
No_of_seqs 110 out of 1067
Neff 8.6
Searched_HMMs 13730
Date Mon Mar 25 03:32:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024166.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024166hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 75.2 18 0.0013 29.0 16.7 24 215-238 185-208 (447)
2 d2r6gf1 e.70.1.1 (F:13-260) Ma 27.3 1.2E+02 0.0088 22.9 8.0 63 7-75 4-66 (248)
3 d1fftb2 f.17.2.1 (B:27-117) Cy 14.2 34 0.0025 21.8 1.5 23 219-241 26-48 (91)
4 d1kqfb2 f.23.22.1 (B:246-290) 11.4 25 0.0018 19.5 0.1 24 208-231 7-30 (45)
5 d3dtub2 f.17.2.1 (B:30-129) Ba 8.2 86 0.0062 19.9 2.0 23 217-239 35-57 (100)
6 d3ehbb2 f.17.2.1 (B:1-107) Bac 7.5 1.2E+02 0.0091 19.4 2.6 23 218-240 42-64 (107)
7 d2h8aa1 f.56.1.1 (A:9-147) Mic 5.9 1.1E+02 0.0081 20.7 1.6 10 219-228 10-19 (139)
8 d2iuba2 f.17.3.1 (A:286-349) M 4.5 2.8E+02 0.02 15.5 2.7 20 215-235 42-61 (64)
9 d1deca_ g.3.15.2 (A:) Decorsin 4.3 91 0.0067 15.7 0.1 12 250-261 10-21 (39)
10 d2e74g1 f.23.26.1 (G:9-35) Pet 3.9 2.6E+02 0.019 12.9 1.8 20 219-238 3-23 (27)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=75.21 E-value=18 Score=28.97 Aligned_cols=24 Identities=8% Similarity=-0.049 Sum_probs=12.3
Q ss_pred hhhhhHHHHHHHHHHHHhccCCCC
Q 024166 215 EQHGTGLLLIAMGITLKLLPADDK 238 (271)
Q Consensus 215 ~~~~~G~~lvl~Gv~l~~~~k~~~ 238 (271)
.....+...++.++..+...+..+
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~ 208 (447)
T d1pw4a_ 185 ALYMPAFCAILVALFAFAMMRDTP 208 (447)
T ss_dssp CTHHHHHHHHHHHHHHHHHCCCSS
T ss_pred cchhhhhhHHHHHHHHHHhcccch
Confidence 334445555566666555544433
No 2
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=27.32 E-value=1.2e+02 Score=22.95 Aligned_cols=63 Identities=17% Similarity=0.026 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHHHhhhHhhcCcchhHHHHHhhcchHHHHHHHHhhcccccccChhhHHHHHHHHHHHH
Q 024166 7 TYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLI 75 (271)
Q Consensus 7 ~~~~~~~l~~~~~~l~~~al~~~~~~~~~i~~s~~pi~v~~~~~ll~~l~e~~~~~~~l~~~l~~~Gv~ 75 (271)
+++++++++.+..++....+..=+...+.+ ..+.++++.+++ +.+|.-..|++.=.+++..++
T Consensus 4 K~~ll~l~~a~~~~~~~~~~~~~~~~~a~~----~~~~~~~~~~vy--~s~r~~p~kyi~PG~~~l~~F 66 (248)
T d2r6gf1 4 KWSVLGLLGLLVGYLVVLMYAQGEYLFAIT----TLILSSAGLYIF--ANRKAYAWRYVYPGMAGMGLF 66 (248)
T ss_dssp THHHHHHHHHHHHHTHHHHHGGGCHHHHHH----HHHHHHHHHHHH--SSSCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcchHHHHHH----HHHHHHheEEEE--EccCccceehhhhHHHHHHHH
Confidence 477788888777666555555544444332 234456677777 778888777765444444433
No 3
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=14.25 E-value=34 Score=21.78 Aligned_cols=23 Identities=9% Similarity=-0.070 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHhccCCCCccc
Q 024166 219 TGLLLIAMGITLKLLPADDKPIK 241 (271)
Q Consensus 219 ~G~~lvl~Gv~l~~~~k~~~~~~ 241 (271)
+.+++.+.|..+|...|.|+++.
T Consensus 26 ~iv~v~V~~~~~~~~~ryR~~~~ 48 (91)
T d1fftb2 26 LIVVIPAILMAVGFAWKYRASNK 48 (91)
T ss_dssp TTTTTHHHHHHHTTTTTTTTSTT
T ss_pred HHHHHHHHHHHHhhheeeeccCC
Confidence 34456777888888888776554
No 4
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=11.40 E-value=25 Score=19.50 Aligned_cols=24 Identities=13% Similarity=0.362 Sum_probs=13.2
Q ss_pred HhCCCchhhhhhHHHHHHHHHHHH
Q 024166 208 IFTKPLTEQHGTGLLLIAMGITLK 231 (271)
Q Consensus 208 ~f~e~~s~~~~~G~~lvl~Gv~l~ 231 (271)
+.+...-+...+|+...+.+.++.
T Consensus 7 lWKgv~Kpl~~~~~~~~~~~~~fH 30 (45)
T d1kqfb2 7 LWKGALKPLAAAGFIATFAGLIFH 30 (45)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHh
Confidence 344555566666666655554443
No 5
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=8.22 E-value=86 Score=19.95 Aligned_cols=23 Identities=4% Similarity=-0.136 Sum_probs=13.6
Q ss_pred hhhHHHHHHHHHHHHhccCCCCc
Q 024166 217 HGTGLLLIAMGITLKLLPADDKP 239 (271)
Q Consensus 217 ~~~G~~lvl~Gv~l~~~~k~~~~ 239 (271)
-.+++.+++.|+..|...|.+++
T Consensus 35 i~~~I~~~V~~~l~~~~~~~r~~ 57 (100)
T d3dtub2 35 IIAAITIFVTLLILYAVWRFHEK 57 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHBTT
T ss_pred HHHHHHHHHHHHHHHHhhhhhcc
Confidence 34455566777777766655543
No 6
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=7.50 E-value=1.2e+02 Score=19.43 Aligned_cols=23 Identities=9% Similarity=-0.018 Sum_probs=13.4
Q ss_pred hhHHHHHHHHHHHHhccCCCCcc
Q 024166 218 GTGLLLIAMGITLKLLPADDKPI 240 (271)
Q Consensus 218 ~~G~~lvl~Gv~l~~~~k~~~~~ 240 (271)
.+.+.+.+.|+..|...|.++++
T Consensus 42 ~~~I~~~V~~~~~~~~~~~r~~~ 64 (107)
T d3ehbb2 42 ITAVTIFVCLLLLICIVRFNRRA 64 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHSBTTT
T ss_pred HHHHHHHHHHHHHHHhhhhhccC
Confidence 34445566677777666655443
No 7
>d2h8aa1 f.56.1.1 (A:9-147) Microsomal glutathione S-transferase 1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=5.87 E-value=1.1e+02 Score=20.66 Aligned_cols=10 Identities=10% Similarity=0.192 Sum_probs=3.8
Q ss_pred hHHHHHHHHH
Q 024166 219 TGLLLIAMGI 228 (271)
Q Consensus 219 ~G~~lvl~Gv 228 (271)
-+.++++-=+
T Consensus 10 ~~~iL~lkm~ 19 (139)
T d2h8aa1 10 YATIILAKMM 19 (139)
T ss_dssp HHHHHHTTHH
T ss_pred HHHHHHHHHH
Confidence 3334433333
No 8
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=4.47 E-value=2.8e+02 Score=15.54 Aligned_cols=20 Identities=0% Similarity=-0.072 Sum_probs=7.7
Q ss_pred hhhhhHHHHHHHHHHHHhccC
Q 024166 215 EQHGTGLLLIAMGITLKLLPA 235 (271)
Q Consensus 215 ~~~~~G~~lvl~Gv~l~~~~k 235 (271)
....+|..+ ..++.++.+.|
T Consensus 42 ~~~~~~~~~-~~~~~~~~~f~ 61 (64)
T d2iuba2 42 YPVVLAVMG-VIAVIMVVYFK 61 (64)
T ss_dssp CHHHHHHHH-HHHHHHHTTTT
T ss_pred HHHHHHHHH-HHHHHHHHHHh
Confidence 333334333 33333444443
No 9
>d1deca_ g.3.15.2 (A:) Decorsin {North american leech (Macrobdella decora) [TaxId: 6405]}
Probab=4.29 E-value=91 Score=15.71 Aligned_cols=12 Identities=17% Similarity=0.058 Sum_probs=8.1
Q ss_pred cceeccccccch
Q 024166 250 VNIRKLSFSERE 261 (271)
Q Consensus 250 ~~~~~~~~~~~~ 261 (271)
+|+||+.-+|||
T Consensus 10 ddqekclcnkde 21 (39)
T d1deca_ 10 DDQEKCLCNKDE 21 (39)
T ss_dssp SCSSCEESSSSE
T ss_pred cchhhccccCCC
Confidence 456777777765
No 10
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=3.86 E-value=2.6e+02 Score=12.90 Aligned_cols=20 Identities=15% Similarity=0.225 Sum_probs=9.3
Q ss_pred hHHHH-HHHHHHHHhccCCCC
Q 024166 219 TGLLL-IAMGITLKLLPADDK 238 (271)
Q Consensus 219 ~G~~l-vl~Gv~l~~~~k~~~ 238 (271)
+|.++ .+.|.+.-.+.++++
T Consensus 3 lgli~~tl~glf~aayqqykr 23 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQQYKR 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS
T ss_pred eeehHHHHHHHHHHHHHHhcC
Confidence 45544 455554444444443
Done!