BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024168
(271 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1A6X|A Chain A, Structure Of The Apo-Biotin Carboxyl Carrier Protein (Apo-
Bccp87) Of Escherichia Coli Acetyl-Coa Carboxylase, Nmr,
49 Structures
Length = 87
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 184 ILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKI 243
I+ SP VG F R+ + K + Q V G LC +E + IE+D +G V I
Sbjct: 13 IVRSPMVGTFYRTPSPDAKA---FIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAI 69
Query: 244 LRKDGDPIGYGDPLIVI 260
L + G P+ + +PL+VI
Sbjct: 70 LVESGQPVEFDEPLVVI 86
>pdb|3BDO|A Chain A, Solution Structure Of Apo-Biotinyl Domain From Acetyl
Coenzyme A Carboxylase Of Escherichia Coli Determined By
Triple-Resonance Nmr Spectroscopy
Length = 82
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 184 ILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKI 243
I+ SP VG F R+ + K + Q V G LC +E + IE+D +G V I
Sbjct: 8 IVRSPMVGTFYRTPSPDAKAF---IEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAI 64
Query: 244 LRKDGDPIGYGDPLIVI 260
L + G P+ + +PL+VI
Sbjct: 65 LVESGQPVEFDEPLVVI 81
>pdb|1BDO|A Chain A, Structure Of The Biotinyl Domain Of Acetyl-Coenzyme A
Carboxylase Determined By Mad Phasing
pdb|2BDO|A Chain A, Solution Structure Of Holo-Biotinyl Domain From Acetyl
Coenzyme A Carboxylase Of Escherichia Coli Determined By
Triple-Resonance Nmr Spectroscopy
Length = 80
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 184 ILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKI 243
I+ SP VG F R+ + K + Q V G LC +E + IE+D +G V I
Sbjct: 6 IVRSPMVGTFYRTPSPDAKAF---IEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAI 62
Query: 244 LRKDGDPIGYGDPLIVI 260
L + G P+ + +PL+VI
Sbjct: 63 LVESGQPVEFDEPLVVI 79
>pdb|1Z6H|A Chain A, Solution Structure Of Bacillus Subtilis Blap Biotinylated-
Form
pdb|1Z7T|A Chain A, Solution Structure Of Bacillus Subtilis Blap Apo-Form
pdb|2B8F|A Chain A, Solution Structure Of Bacillus Subtilis Blap Apo Form
(Energy Minimized Mean Structure)
pdb|2B8G|A Chain A, Solution Structure Of Bacillus Subtilis Blap Biotinylated-
Form (Energy Minimized Mean Structure)
Length = 72
Score = 33.9 bits (76), Expect = 0.088, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 30/50 (60%)
Query: 209 KEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLI 258
K + +GQ + +E + EIPI +D +G V ++ +K+GD + GD L+
Sbjct: 16 KAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDFVNEGDVLL 65
>pdb|3VA7|A Chain A, Crystal Structure Of The Kluyveromyces Lactis Urea
Carboxylase
Length = 1236
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%)
Query: 201 GKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVI 260
G+ P V G + IE + E+ + + +G+V KIL K+GD + GD + VI
Sbjct: 1176 GRFWKPVAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNGDMVEAGDLVAVI 1235
Query: 261 L 261
+
Sbjct: 1236 V 1236
>pdb|2JKU|A Chain A, Crystal Structure Of The N-Terminal Region Of The Biotin
Acceptor Domain Of Human Propionyl-Coa Carboxylase
Length = 94
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 207 SCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLI 258
S K V EGQ +C IE + + + + G V + + GD +G GD L+
Sbjct: 40 SVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGDTVGEGDLLV 91
>pdb|1O78|A Chain A, Biotin Carboxyl Carrier Domain Of Transcarboxylase (1.3s)
[10-48] Deletion Mutant
Length = 84
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%)
Query: 208 CKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVI 260
KE TV+ GQ + +E + E I + G+V K+L K+ D + G LI I
Sbjct: 31 VKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKI 83
>pdb|1DCZ|A Chain A, Biotin Carboxyl Carrier Domain Of Transcarboxylase (Tc
1.3s)
pdb|1DD2|A Chain A, Biotin Carboxyl Carrier Domain Of Transcarboxylase (Tc
1.3s)
Length = 77
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%)
Query: 208 CKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVI 260
KE TV+ GQ + +E + E I + G+V K+L K+ D + G LI I
Sbjct: 24 VKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKI 76
>pdb|3N6R|A Chain A, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|C Chain C, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|E Chain E, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|G Chain G, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|I Chain I, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|K Chain K, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
Length = 681
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 212 QTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLI 258
Q V+EGQ LC IE + E + ++ G V KI G+ + D ++
Sbjct: 632 QEVQEGQALCTIEAMKMENILRAEKKGVVAKINASAGNSLAVDDVIM 678
>pdb|2D5D|A Chain A, Structure Of Biotin Carboxyl Carrier Protein (74val Start)
From Pyrococcus Horikoshi Ot3 Ligand Free Form Ii
pdb|2D5D|B Chain B, Structure Of Biotin Carboxyl Carrier Protein (74val Start)
From Pyrococcus Horikoshi Ot3 Ligand Free Form Ii
pdb|2EVB|A Chain A, Structure Of Biotin Carboxyl Carrier Protein (74val Start)
From Pyrococcus Horikoshi Ot3 Ligand Free Form I
pdb|2EJF|C Chain C, Crystal Structure Of The Biotin Protein Ligase (Mutations
R48a And K111a) And Biotin Carboxyl Carrier Protein
Complex From Pyrococcus Horikoshii Ot3
pdb|2EJF|D Chain D, Crystal Structure Of The Biotin Protein Ligase (Mutations
R48a And K111a) And Biotin Carboxyl Carrier Protein
Complex From Pyrococcus Horikoshii Ot3
pdb|2EJG|C Chain C, Crystal Structure Of The Biotin Protein Ligase (Mutation
R48a) And Biotin Carboxyl Carrier Protein Complex From
Pyrococcus Horikoshii Ot3
pdb|2EJG|D Chain D, Crystal Structure Of The Biotin Protein Ligase (Mutation
R48a) And Biotin Carboxyl Carrier Protein Complex From
Pyrococcus Horikoshii Ot3
Length = 74
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 25/45 (55%)
Query: 214 VREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLI 258
VR GQ L +E + E I S G V +IL K+G+ + G PLI
Sbjct: 27 VRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEAVDTGQPLI 71
>pdb|3HO8|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
Length = 1150
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 201 GKRAPPSCKE-----KQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGD 255
G + P S E +TV+ Q L E + E I++ G + ++ +GD I GD
Sbjct: 1081 GAQMPGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDTIATGD 1140
Query: 256 PLIVI 260
LI I
Sbjct: 1141 LLIEI 1145
>pdb|4HNT|A Chain A, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|B Chain B, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|C Chain C, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|D Chain D, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 201 GKRAPPSCKE-----KQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGD 255
G + P S E +TV+ Q L E + E I++ G + ++ +GD I GD
Sbjct: 1104 GAQMPGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDTIATGD 1163
Query: 256 PLIVI 260
LI I
Sbjct: 1164 LLIEI 1168
>pdb|3HBL|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
Length = 1150
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 201 GKRAPPSCKE-----KQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGD 255
G + P S E +TV+ Q L E + E I++ G + ++ +GD I GD
Sbjct: 1081 GAQMPGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDTIATGD 1140
Query: 256 PLIVI 260
LI I
Sbjct: 1141 LLIEI 1145
>pdb|3HB9|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
Length = 1150
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 201 GKRAPPSCKE-----KQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGD 255
G + P S E +TV+ Q L E + E I++ G + ++ +GD I GD
Sbjct: 1081 GAQMPGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDTIATGD 1140
Query: 256 PLIVI 260
LI I
Sbjct: 1141 LLIEI 1145
>pdb|3BG5|A Chain A, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|B Chain B, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|C Chain C, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|D Chain D, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
Length = 1173
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 201 GKRAPPSCKE-----KQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGD 255
G + P S E +TV+ Q L E + E I++ G + ++ +GD I GD
Sbjct: 1104 GAQMPGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDTIATGD 1163
Query: 256 PLIVI 260
LI I
Sbjct: 1164 LLIEI 1168
>pdb|4HNU|A Chain A, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|B Chain B, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|C Chain C, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|D Chain D, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 201 GKRAPPSCKE-----KQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGD 255
G + P S E +TV+ Q L E + E I++ G + ++ +GD I GD
Sbjct: 1104 GAQMPGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDTIATGD 1163
Query: 256 PLIVI 260
LI I
Sbjct: 1164 LLIEI 1168
>pdb|4HNV|A Chain A, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|B Chain B, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|C Chain C, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|D Chain D, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 201 GKRAPPSCKE-----KQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGD 255
G + P S E +TV+ Q L E + E I++ G + ++ +GD I GD
Sbjct: 1104 GAQMPGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDTIATGD 1163
Query: 256 PLIVI 260
LI I
Sbjct: 1164 LLIEI 1168
>pdb|1Z67|A Chain A, Structure Of Homeodomain-like Protein Of Unknown Function
S4005 From Shigella Flexneri
Length = 135
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%)
Query: 159 AITKPVSSSGGIQTLLDKAADEGLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQ 218
AI V GGIQ LL+K GL + S + +R++++ G++ + GQ
Sbjct: 24 AILSWVEEQGGIQVLLEKLQSGGLGAILSTWLSNQQRNQSVSGEQLESALGTNAVSDLGQ 83
Query: 219 VL 220
L
Sbjct: 84 KL 85
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.135 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,565,062
Number of Sequences: 62578
Number of extensions: 285202
Number of successful extensions: 469
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 444
Number of HSP's gapped (non-prelim): 25
length of query: 271
length of database: 14,973,337
effective HSP length: 97
effective length of query: 174
effective length of database: 8,903,271
effective search space: 1549169154
effective search space used: 1549169154
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.3 bits)