BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024168
(271 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q06881|BCCP_NOSS1 Biotin carboxyl carrier protein of acetyl-CoA carboxylase OS=Nostoc
sp. (strain PCC 7120 / UTEX 2576) GN=accB PE=1 SV=2
Length = 182
Score = 64.7 bits (156), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 93/189 (49%), Gaps = 24/189 (12%)
Query: 87 DSSEVESLVTDICNTTSVAEFELKLDGFRLYVTRDI-AGDSIPPLP------------PS 133
D +E+ L+T I T +AE LK D F L V + + +S+ P+ PS
Sbjct: 4 DFNEIRQLLTTIAQT-DIAEVTLKSDDFELTVRKAVGVNNSVVPVVTAPLSGVVGSGLPS 62
Query: 134 SPAPVTVNKPADRPDSNGSVPTSSLAITKPVSSSGGIQTLLDKAADEGLVILESPKVGYF 193
+ V P+ P+ P +S A V+SSG K D+ L + SP VG F
Sbjct: 63 AIPIVAHAAPSPSPE-----PGTSRAADHAVTSSGSQPGA--KIIDQKLAEVASPMVGTF 115
Query: 194 RRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGY 253
R+ G+ ++ +R+GQ +C IE + IE+D++G+VI+IL ++G+P+ Y
Sbjct: 116 YRAPA-PGEAVFVEVGDR--IRQGQTVCIIEAMKLMNEIEADVSGQVIEILVQNGEPVEY 172
Query: 254 GDPLIVILP 262
PL+ I P
Sbjct: 173 NQPLMRIKP 181
>sp|Q42533|BCCP1_ARATH Biotin carboxyl carrier protein of acetyl-CoA carboxylase 1,
chloroplastic OS=Arabidopsis thaliana GN=BCCP1 PE=1 SV=2
Length = 280
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 182 LVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVI 241
L ++SP G F RS PP K V++GQVLC +E + IESD G V+
Sbjct: 203 LPTVKSPMAGTFYRS---PAPGEPPFIKVGDKVQKGQVLCIVEAMKLMNEIESDHTGTVV 259
Query: 242 KILRKDGDPIGYGDPLIVILP 262
I+ +DG P+ PL V+ P
Sbjct: 260 DIVAEDGKPVSLDTPLFVVQP 280
>sp|Q9LLC1|BCCP2_ARATH Biotin carboxyl carrier protein of acetyl-CoA carboxylase 2,
chloroplastic OS=Arabidopsis thaliana GN=BCCP2 PE=1 SV=1
Length = 255
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 185 LESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKIL 244
L+SP G F RS G PP K V++GQ++C IE + IE++ +G ++++L
Sbjct: 181 LKSPMAGTFYRS---PGPGEPPFVKVGDKVQKGQIVCIIEAMKLMNEIEAEKSGTIMELL 237
Query: 245 RKDGDPIGYGDPLIVILP 262
+DG P+ PL VI P
Sbjct: 238 AEDGKPVSVDTPLFVIAP 255
>sp|Q42783|BCCP_SOYBN Biotin carboxyl carrier protein of acetyl-CoA carboxylase,
chloroplastic OS=Glycine max GN=ACCB-1 PE=1 SV=1
Length = 262
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 176 KAADEGLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESD 235
K+A L L+SP G F RS P K V++GQV+C IE + IE+D
Sbjct: 179 KSAKSSLPPLKSPMAGTFYRS---PAPGEPSFVKVGDKVKKGQVVCIIEAMKLMNEIEAD 235
Query: 236 IAGEVIKILRKDGDPIGYGDPLIVILP 262
+G +++I+ +D + PL VI P
Sbjct: 236 QSGTIVEIVAEDAKSVSVDTPLFVIQP 262
>sp|P0ABE1|BCCP_SHIFL Biotin carboxyl carrier protein of acetyl-CoA carboxylase
OS=Shigella flexneri GN=accB PE=3 SV=1
Length = 156
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 75/166 (45%), Gaps = 19/166 (11%)
Query: 95 VTDICNTTSVAEFELKLDGFRLYVTRDIAGDSIPPLPPSSPAPVTVNKPADRPDSNGSVP 154
+ ++ + ++E E+ + ++R S P + + AP+ + +PA SN + P
Sbjct: 9 LIELVEESGISELEISEGEESVRISRAAPAASFPVMQQAYAAPM-MQQPAQ---SNAAAP 64
Query: 155 TSSLAITKPVSSSGGIQTLLDKAADEGLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTV 214
+ ++ P AA+ I+ SP VG F R+ + K + Q V
Sbjct: 65 ATVPSMEAPA------------AAEISGHIVRSPMVGTFYRTPSPDAKA---FIEVGQKV 109
Query: 215 REGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVI 260
G LC +E + IE+D +G V IL + G P+ + +PL+VI
Sbjct: 110 NVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVI 155
>sp|P0ABD8|BCCP_ECOLI Biotin carboxyl carrier protein of acetyl-CoA carboxylase
OS=Escherichia coli (strain K12) GN=accB PE=1 SV=1
Length = 156
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 75/166 (45%), Gaps = 19/166 (11%)
Query: 95 VTDICNTTSVAEFELKLDGFRLYVTRDIAGDSIPPLPPSSPAPVTVNKPADRPDSNGSVP 154
+ ++ + ++E E+ + ++R S P + + AP+ + +PA SN + P
Sbjct: 9 LIELVEESGISELEISEGEESVRISRAAPAASFPVMQQAYAAPM-MQQPAQ---SNAAAP 64
Query: 155 TSSLAITKPVSSSGGIQTLLDKAADEGLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTV 214
+ ++ P AA+ I+ SP VG F R+ + K + Q V
Sbjct: 65 ATVPSMEAPA------------AAEISGHIVRSPMVGTFYRTPSPDAKA---FIEVGQKV 109
Query: 215 REGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVI 260
G LC +E + IE+D +G V IL + G P+ + +PL+VI
Sbjct: 110 NVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVI 155
>sp|P0ABD9|BCCP_ECOL6 Biotin carboxyl carrier protein of acetyl-CoA carboxylase
OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 /
UPEC) GN=accB PE=3 SV=1
Length = 156
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 75/166 (45%), Gaps = 19/166 (11%)
Query: 95 VTDICNTTSVAEFELKLDGFRLYVTRDIAGDSIPPLPPSSPAPVTVNKPADRPDSNGSVP 154
+ ++ + ++E E+ + ++R S P + + AP+ + +PA SN + P
Sbjct: 9 LIELVEESGISELEISEGEESVRISRAAPAASFPVMQQAYAAPM-MQQPAQ---SNAAAP 64
Query: 155 TSSLAITKPVSSSGGIQTLLDKAADEGLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTV 214
+ ++ P AA+ I+ SP VG F R+ + K + Q V
Sbjct: 65 ATVPSMEAPA------------AAEISGHIVRSPMVGTFYRTPSPDAKA---FIEVGQKV 109
Query: 215 REGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVI 260
G LC +E + IE+D +G V IL + G P+ + +PL+VI
Sbjct: 110 NVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVI 155
>sp|P0ABE0|BCCP_ECO57 Biotin carboxyl carrier protein of acetyl-CoA carboxylase
OS=Escherichia coli O157:H7 GN=accB PE=3 SV=1
Length = 156
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 75/166 (45%), Gaps = 19/166 (11%)
Query: 95 VTDICNTTSVAEFELKLDGFRLYVTRDIAGDSIPPLPPSSPAPVTVNKPADRPDSNGSVP 154
+ ++ + ++E E+ + ++R S P + + AP+ + +PA SN + P
Sbjct: 9 LIELVEESGISELEISEGEESVRISRAAPAASFPVMQQAYAAPM-MQQPAQ---SNAAAP 64
Query: 155 TSSLAITKPVSSSGGIQTLLDKAADEGLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTV 214
+ ++ P AA+ I+ SP VG F R+ + K + Q V
Sbjct: 65 ATVPSMEAPA------------AAEISGHIVRSPMVGTFYRTPSPDAKA---FIEVGQKV 109
Query: 215 REGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVI 260
G LC +E + IE+D +G V IL + G P+ + +PL+VI
Sbjct: 110 NVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVI 155
>sp|P49786|BCCP_BACSU Biotin carboxyl carrier protein of acetyl-CoA carboxylase
OS=Bacillus subtilis (strain 168) GN=accB PE=3 SV=2
Length = 159
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 179 DEGLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAG 238
DE L + SP VG F S + A P V E V+C +E + IE+++ G
Sbjct: 78 DENLHKITSPMVGTFYASSS---PEAGPYVTAGSKVNENTVVCIVEAMKLFNEIEAEVKG 134
Query: 239 EVIKILRKDGDPIGYGDPLIVI 260
E++++L ++G + YG PL ++
Sbjct: 135 EIVEVLVENGQLVEYGQPLFLV 156
>sp|P43874|BCCP_HAEIN Biotin carboxyl carrier protein of acetyl-CoA carboxylase
OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121
/ KW20 / Rd) GN=accB PE=1 SV=1
Length = 155
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 184 ILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKI 243
++ SP VG F RS + A + Q+V+ G LC +E + IE+D AG V I
Sbjct: 81 LVRSPMVGTFYRSPS---PEAKAFVEVGQSVKVGDALCIVEAMKMMNRIEADKAGVVKAI 137
Query: 244 LRKDGDPIGYGDPLIVI 260
L DG+ + + +PLIVI
Sbjct: 138 LINDGNAVEFDEPLIVI 154
>sp|P37799|BCCP_PSEAE Biotin carboxyl carrier protein of acetyl-CoA carboxylase
OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C
/ PRS 101 / LMG 12228) GN=accB PE=3 SV=1
Length = 156
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 45/82 (54%), Gaps = 11/82 (13%)
Query: 184 ILESPKVGYFRRSRTIKGKRAPPS----CKEKQTVREGQVLCYIEQLGGEIPIESDIAGE 239
++ SP VG F R+ A P+ + Q+V++G +LC +E + IE++++G
Sbjct: 82 VVRSPMVGTFYRA-------ASPTSANFVEVGQSVKKGDILCIVEAMKMMNHIEAEVSGT 134
Query: 240 VIKILRKDGDPIGYGDPLIVIL 261
+ IL ++G P+ + PL I+
Sbjct: 135 IESILVENGQPVEFDQPLFTIV 156
>sp|Q58628|PYCB_METJA Pyruvate carboxylase subunit B OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=pycB PE=1 SV=1
Length = 567
Score = 39.7 bits (91), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%)
Query: 199 IKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLI 258
+G KE V++G V+ +E + E PIES + G V +IL +GD + GD ++
Sbjct: 505 FRGMVTKIKVKEGDKVKKGDVIVVLEAMKMEHPIESPVEGTVERILIDEGDAVNVGDVIM 564
Query: 259 VI 260
+I
Sbjct: 565 II 566
>sp|Q1XDK5|BCCP_PORYE Biotin carboxyl carrier protein of acetyl-CoA carboxylase
OS=Porphyra yezoensis GN=accB PE=3 SV=1
Length = 158
Score = 38.5 bits (88), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 68/159 (42%), Gaps = 39/159 (24%)
Query: 106 EFELKLDGFRLYVTRDIAGDSIPPLPPSSPAPVTVNKPADRPDSNGSVPTSSLAITKPVS 165
+FEL L+ V ++I PS + V N P+ I K ++
Sbjct: 29 KFELLLNKTYKKVNQEII--------PSQKSAVLQNSPS--------------TIIKSIN 66
Query: 166 SSGGIQTLLDKAADEGLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREG------QV 219
++ I + + + ++ SP VG F S P+ EK V+ G Q
Sbjct: 67 NTKKIFCVNEDRTEYATIV--SPMVGTFYHS---------PAPGEKIFVQVGDEVKFNQT 115
Query: 220 LCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLI 258
+C IE + IE++I G++I+IL KDGD + G L+
Sbjct: 116 VCIIEAMKLMNEIEAEIEGKIIEILVKDGDIVDCGQALM 154
>sp|O84125|BCCP_CHLTR Biotin carboxyl carrier protein of acetyl-CoA carboxylase
OS=Chlamydia trachomatis (strain D/UW-3/Cx) GN=accB PE=3
SV=1
Length = 164
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 187 SPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRK 246
SP VG F S + AP K TV E V+C +E + +++ ++G V +IL
Sbjct: 91 SPLVGTFYGSPS---PEAPAFIKPGDTVSEDTVVCIVEAMKVMNEVKAGMSGRVEEILIT 147
Query: 247 DGDPIGYGDPLIVIL 261
+GDP+ +G L I+
Sbjct: 148 NGDPVQFGSKLFRIV 162
>sp|Q03030|DCOA_SALTY Oxaloacetate decarboxylase alpha chain OS=Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720) GN=oadA1 PE=3 SV=2
Length = 591
Score = 37.4 bits (85), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%)
Query: 210 EKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVI 260
E QTV EG VL +E + E I + AG V I K GD + GD L+ +
Sbjct: 540 EGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKSGDAVSVGDTLMTL 590
>sp|P13187|DCOA_KLEPN Oxaloacetate decarboxylase alpha chain OS=Klebsiella pneumoniae
GN=oadA PE=3 SV=2
Length = 596
Score = 35.8 bits (81), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%)
Query: 208 CKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVI 260
E QTV G+VL +E + E I + AG V I K GD + GD L+ +
Sbjct: 543 ASEGQTVAAGEVLLILEAMKMETEIRAAQAGTVRGIAVKAGDAVAVGDTLMTL 595
>sp|Q8XGX8|DCOA_SALTI Oxaloacetate decarboxylase alpha chain OS=Salmonella typhi GN=oadA1
PE=3 SV=3
Length = 591
Score = 35.8 bits (81), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%)
Query: 210 EKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVI 260
E Q+V EG VL +E + E I + AG V I K GD + GD L+ +
Sbjct: 540 EGQSVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKSGDAVSVGDTLMTL 590
>sp|A5H0J2|DUR1_LACKL Urea amidolyase OS=Lachancea kluyveri GN=DUR1,2 PE=3 SV=1
Length = 1830
Score = 35.8 bits (81), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%)
Query: 201 GKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVI 260
G+ P TV +G L +E + E+ + + +G+V+KI+ K+GD + GD + VI
Sbjct: 1770 GRFWKPMVSAGDTVTKGDGLVIVEAMKTEMVVPAKKSGKVLKIVHKNGDMVDAGDLVAVI 1829
>sp|O19918|BCCP_CYACA Biotin carboxyl carrier protein of acetyl-CoA carboxylase
OS=Cyanidium caldarium GN=accB PE=3 SV=1
Length = 152
Score = 35.8 bits (81), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 7/126 (5%)
Query: 136 APVTVNKPADRPDSNGSVPTSSLAITKPVSSSGGIQTLLDKAADEGLVILESPKVGYFRR 195
+ + + K P N +P + + + SS + + K + ++ + SP G F
Sbjct: 30 SNIHIYKNICNPYKNYQLP----ELARNLQSSKKLDNAILKQDKKNIIDILSPISGIFYS 85
Query: 196 SRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGD 255
S A P V +GQ LC IE + IESD G++ +I ++GD +
Sbjct: 86 SSK---PGASPFVAVGSVVSKGQTLCIIEAMKTMNEIESDSIGKIHQICARNGDFVTKNQ 142
Query: 256 PLIVIL 261
L+ I+
Sbjct: 143 VLMKII 148
>sp|A8QA64|CLU_MALGO Clustered mitochondria protein homolog OS=Malassezia globosa
(strain ATCC MYA-4612 / CBS 7966) GN=CLU1 PE=3 SV=1
Length = 1325
Score = 35.4 bits (80), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 8/102 (7%)
Query: 35 WMGRKPFQYAGLAMSQPLEKAFTVFCGQSSEAESTRNARDGHEDMKSTQLIPDSSEVESL 94
W+ R+P S P+ + A++ +RD +E+++S++ +P SS E L
Sbjct: 306 WLAREPKHE-----SDPMRTQTAFLLTGAMSADTLDGSRDWNEELQSSRELPRSSLAERL 360
Query: 95 VTDICNTTSVAEFELKLDGFRLYVTRDIAGDSIPPLPPSSPA 136
+ D AEF L R+ V R AG+ P P +PA
Sbjct: 361 MRDRVLNRLYAEFTLA--AARV-VPRVAAGEVAPMNPADAPA 399
>sp|Q9Z901|BCCP_CHLPN Biotin carboxyl carrier protein of acetyl-CoA carboxylase
OS=Chlamydia pneumoniae GN=accB PE=3 SV=1
Length = 167
Score = 35.0 bits (79), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 184 ILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKI 243
+ SP VG F S +P K V E ++C +E + +++ ++G V+++
Sbjct: 89 FISSPLVGTFYGS---PAPDSPSFVKPGDIVSEDTIVCIVEAMKVMNEVKAGMSGRVLEV 145
Query: 244 LRKDGDPIGYGDPLIVI 260
L +GDP+ +G L I
Sbjct: 146 LITNGDPVQFGSKLFRI 162
>sp|Q9XCD6|BTB7_MYCS2 Biotinylated protein TB7.3 homolog OS=Mycobacterium smegmatis
(strain ATCC 700084 / mc(2)155) GN=MSMEG_1917 PE=3 SV=3
Length = 71
Score = 34.7 bits (78), Expect = 0.72, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 210 EKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVI 260
E + EG L +E + EIP+ +++AG V K+ +GD I G + VI
Sbjct: 20 EGDQIGEGDTLVLLESMKMEIPVLAEVAGTVTKVNVAEGDVIQAGHLIAVI 70
>sp|C0H419|BLAP_BACSU Biotin/lipoyl attachment protein OS=Bacillus subtilis (strain 168)
GN=yngHB PE=1 SV=1
Length = 73
Score = 34.7 bits (78), Expect = 0.76, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 30/50 (60%)
Query: 209 KEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLI 258
K + +GQ + +E + EIPI +D +G V ++ +K+GD + GD L+
Sbjct: 17 KAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDFVNEGDVLL 66
>sp|Q9PKR5|BCCP_CHLMU Biotin carboxyl carrier protein of acetyl-CoA carboxylase
OS=Chlamydia muridarum (strain MoPn / Nigg) GN=accB PE=3
SV=1
Length = 163
Score = 34.3 bits (77), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 76/181 (41%), Gaps = 27/181 (14%)
Query: 87 DSSEVESLVTDICNTTSVAEFELKLDGFRLYVTRDIAGDSIPPLPPSSPAPVTVNK---- 142
D ++E L+ + + +K DGF L + RD P+ PV +
Sbjct: 2 DLKQIEKLMIAM-GRNKMKRIAIKRDGFELELERDTG--------PNIQEPVFYDNRLFA 52
Query: 143 --PADRPDSNGSVPTSSLAITKPVSSSGGIQTLLDKAADEGLVILESPKVGYFRRSRTIK 200
+RP +P S + P+ G + DK + ++ SP VG F + +
Sbjct: 53 GFTQERP-----IP-SDQNLGNPIVKEVG-EKKEDKPVEGDFIV--SPLVGTFYGAPS-- 101
Query: 201 GKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVI 260
+P K V E V+C +E + +++ +AG V ++L +GDP+ +G L I
Sbjct: 102 -PESPAFVKPGDIVSEDTVVCIVEAMKVMNEVKAGMAGRVEEVLITNGDPVQFGSKLFRI 160
Query: 261 L 261
+
Sbjct: 161 V 161
>sp|P14882|PCCA_RAT Propionyl-CoA carboxylase alpha chain, mitochondrial OS=Rattus
norvegicus GN=Pcca PE=1 SV=3
Length = 737
Score = 33.1 bits (74), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 62/157 (39%), Gaps = 17/157 (10%)
Query: 107 FELKLDGFRLYVTRDIAGDSIPPLPPSSPAPVTVNKPADRPDSNGSVPTSSLAITKPVSS 166
F +++DG +L VT + PL + PD+ G++ L V
Sbjct: 590 FNVEVDGSKLNVTS--TWNLASPLLSVNVDGTQRTVQCLSPDAGGNMSIQFLGTVYKVHI 647
Query: 167 SGGI-----QTLLDKAADEGLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLC 221
+ + +L+K + +L SPK G S K V EGQ +C
Sbjct: 648 LTKLAAELNKFMLEKVPKDTSSVLRSPKPGVV----------VAVSVKPGDMVAEGQEIC 697
Query: 222 YIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLI 258
IE + + + + G+V + K GD +G GD L+
Sbjct: 698 VIEAMKMQNSMTAGKMGKVKLVHCKAGDTVGEGDLLV 734
>sp|P32528|DUR1_YEAST Urea amidolyase OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=DUR1,2 PE=1 SV=2
Length = 1835
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 10/81 (12%)
Query: 180 EGLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGE 239
EG I+ S G F +S G + GQ L IE + E+ I + +G+
Sbjct: 1761 EGAEIVYSEYSGRFWKSIASVG----------DVIEAGQGLLIIEAMKAEMIISAPKSGK 1810
Query: 240 VIKILRKDGDPIGYGDPLIVI 260
+IKI +GD + GD + VI
Sbjct: 1811 IIKICHGNGDMVDSGDIVAVI 1831
>sp|D3DJ41|2OCL_HYDTT 2-oxoglutarate carboxylase large subunit OS=Hydrogenobacter
thermophilus (strain DSM 6534 / IAM 12695 / TK-6)
GN=cfiA PE=1 SV=1
Length = 652
Score = 32.0 bits (71), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%)
Query: 208 CKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVI 260
KE V+EGQ + +E + E I + I+G V K+ K GD + D L+ I
Sbjct: 590 VKEGDKVKEGQTVAIVEAMKMENEIHAPISGVVEKVFVKPGDNVTPDDALLRI 642
>sp|Q9KGF6|SYE_BACHD Glutamate--tRNA ligase OS=Bacillus halodurans (strain ATCC BAA-125
/ DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=gltX PE=3
SV=1
Length = 485
Score = 31.6 bits (70), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Query: 186 ESPKVGYFRRSRTIKGKRAPPSCKEKQTVR----EGQVLCYIEQLGGEIPIESDIAGEVI 241
E PK R T + +RA + K VR EGQV+ + + GE+ ESD G+ +
Sbjct: 127 EMPKYSGRDRDLTEEQRRAYEAKGIKPVVRFRVPEGQVIKIQDAVRGEVSFESDGIGDFV 186
Query: 242 KILRKDGDPIGYGDPLIV 259
I RKDG P+ Y ++V
Sbjct: 187 -IARKDGVPM-YNFAVVV 202
>sp|P05165|PCCA_HUMAN Propionyl-CoA carboxylase alpha chain, mitochondrial OS=Homo
sapiens GN=PCCA PE=1 SV=4
Length = 728
Score = 31.2 bits (69), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 10/86 (11%)
Query: 173 LLDKAADEGLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPI 232
+L+K ++ +L SP + G S K V EGQ +C IE + + +
Sbjct: 650 MLEKVTEDTSSVLRSP----------MPGVVVAVSVKPGDAVAEGQEICVIEAMKMQNSM 699
Query: 233 ESDIAGEVIKILRKDGDPIGYGDPLI 258
+ G V + + GD +G GD L+
Sbjct: 700 TAGKTGTVKSVHCQAGDTVGEGDLLV 725
>sp|Q5XAE6|BCCP_STRP6 Biotin carboxyl carrier protein of acetyl-CoA carboxylase
OS=Streptococcus pyogenes serotype M6 (strain ATCC
BAA-946 / MGAS10394) GN=accB PE=1 SV=1
Length = 166
Score = 31.2 bits (69), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 184 ILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIE--QLGGEIPIESDIAGEVI 241
I+ESP VG + + PP TV++GQ L IE ++ E+P D G +
Sbjct: 92 IVESPLVGVAYLAAS---PDKPPFVAVGDTVKKGQTLVIIEAMKVMNEVPAPCD--GVIT 146
Query: 242 KILRKDGDPIGYGDPLIVI 260
+IL + D I +G L+ I
Sbjct: 147 EILVSNEDVIEFGQGLVRI 165
>sp|Q91ZA3|PCCA_MOUSE Propionyl-CoA carboxylase alpha chain, mitochondrial OS=Mus
musculus GN=Pcca PE=2 SV=2
Length = 724
Score = 31.2 bits (69), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 207 SCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLI 258
S K V EGQ +C IE + + + + G+V + K GD +G GD L+
Sbjct: 670 SVKPGDMVAEGQEICVIEAMKMQNSMTAGKMGKVKLVHCKAGDTVGEGDLLV 721
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.134 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,600,376
Number of Sequences: 539616
Number of extensions: 4361803
Number of successful extensions: 13316
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 13238
Number of HSP's gapped (non-prelim): 121
length of query: 271
length of database: 191,569,459
effective HSP length: 116
effective length of query: 155
effective length of database: 128,974,003
effective search space: 19990970465
effective search space used: 19990970465
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)