Query 024168
Match_columns 271
No_of_seqs 233 out of 2101
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 02:35:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024168.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024168hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00531 BCCP acetyl-CoA carb 100.0 7.5E-32 1.6E-36 230.6 19.4 156 86-261 1-156 (156)
2 PRK06302 acetyl-CoA carboxylas 100.0 4.6E-31 1E-35 225.5 19.4 155 86-261 1-155 (155)
3 COG0511 AccB Biotin carboxyl c 99.9 2.7E-27 5.8E-32 199.2 13.6 140 91-262 1-140 (140)
4 PLN02983 biotin carboxyl carri 99.9 1.7E-24 3.7E-29 198.2 21.3 163 89-262 107-274 (274)
5 PF00364 Biotin_lipoyl: Biotin 99.7 8E-18 1.7E-22 126.8 6.6 73 184-260 2-74 (74)
6 PRK07051 hypothetical protein; 99.7 3.7E-16 8.1E-21 119.5 10.7 76 183-261 4-79 (80)
7 PRK05889 putative acetyl-CoA c 99.6 7.5E-16 1.6E-20 115.0 9.1 67 184-260 4-70 (71)
8 PRK06549 acetyl-CoA carboxylas 99.6 1.1E-14 2.3E-19 121.8 15.8 70 181-260 60-129 (130)
9 PRK08225 acetyl-CoA carboxylas 99.6 4.2E-15 9.1E-20 110.2 8.6 68 184-261 3-70 (70)
10 PRK06748 hypothetical protein; 99.6 1.3E-14 2.8E-19 112.7 9.6 71 182-262 4-75 (83)
11 PRK05641 putative acetyl-CoA c 99.6 5.9E-14 1.3E-18 120.2 14.6 70 181-260 83-152 (153)
12 cd06850 biotinyl_domain The bi 99.4 3.3E-13 7.2E-18 96.7 7.8 66 185-260 2-67 (67)
13 PRK14042 pyruvate carboxylase 99.4 2.7E-12 5.8E-17 130.1 10.0 70 183-262 526-595 (596)
14 PRK14040 oxaloacetate decarbox 99.3 5.9E-11 1.3E-15 120.4 15.0 68 183-260 525-592 (593)
15 PRK14875 acetoin dehydrogenase 99.3 6.3E-12 1.4E-16 116.0 7.2 61 203-263 19-79 (371)
16 PRK09282 pyruvate carboxylase 99.3 1.2E-11 2.7E-16 125.3 9.4 70 183-262 523-592 (592)
17 cd06663 Biotinyl_lipoyl_domain 99.3 2.1E-11 4.7E-16 90.2 7.9 56 205-260 18-73 (73)
18 TIGR02712 urea_carbox urea car 99.2 1.8E-11 3.8E-16 132.6 9.6 73 179-261 1129-1201(1201)
19 TIGR01108 oadA oxaloacetate de 99.2 1.6E-11 3.4E-16 124.4 8.2 65 183-257 518-582 (582)
20 TIGR01235 pyruv_carbox pyruvat 99.2 3.4E-11 7.4E-16 129.7 9.2 71 181-261 1073-1143(1143)
21 PLN02226 2-oxoglutarate dehydr 99.2 2.3E-11 5E-16 120.1 6.7 77 183-263 92-168 (463)
22 PRK12999 pyruvate carboxylase; 99.2 6.4E-11 1.4E-15 127.8 9.4 71 182-262 1076-1146(1146)
23 PTZ00144 dihydrolipoamide succ 99.2 3.8E-11 8.3E-16 117.3 7.0 78 182-263 44-121 (418)
24 COG4770 Acetyl/propionyl-CoA c 99.2 7E-11 1.5E-15 118.1 7.8 70 183-262 576-645 (645)
25 COG1038 PycA Pyruvate carboxyl 99.1 1.4E-10 2.9E-15 119.6 6.0 75 177-261 1074-1148(1149)
26 COG0508 AceF Pyruvate/2-oxoglu 99.1 2E-10 4.2E-15 111.9 6.7 78 183-264 3-80 (404)
27 PRK05704 dihydrolipoamide succ 99.0 6.8E-10 1.5E-14 108.2 8.6 61 204-264 20-80 (407)
28 TIGR01348 PDHac_trf_long pyruv 98.9 1.5E-09 3.3E-14 109.2 7.5 77 182-263 116-192 (546)
29 PRK11854 aceF pyruvate dehydro 98.9 1.7E-09 3.6E-14 110.6 7.4 76 182-263 206-281 (633)
30 TIGR01347 sucB 2-oxoglutarate 98.9 1.6E-09 3.4E-14 105.6 6.8 60 204-263 18-77 (403)
31 PRK11855 dihydrolipoamide acet 98.9 2.3E-09 5E-14 107.7 7.9 77 182-263 119-195 (547)
32 PRK11854 aceF pyruvate dehydro 98.9 2E-09 4.4E-14 110.0 7.0 74 184-263 4-77 (633)
33 TIGR02927 SucB_Actino 2-oxoglu 98.9 4.4E-09 9.4E-14 106.9 8.4 77 183-263 136-212 (590)
34 KOG0559 Dihydrolipoamide succi 98.8 2.1E-09 4.6E-14 102.8 4.5 60 203-262 89-148 (457)
35 PLN02528 2-oxoisovalerate dehy 98.7 2.8E-08 6E-13 97.2 7.9 59 205-263 17-75 (416)
36 cd06849 lipoyl_domain Lipoyl d 98.7 8.2E-08 1.8E-12 67.5 8.0 56 205-260 19-74 (74)
37 PRK11855 dihydrolipoamide acet 98.7 2.2E-08 4.7E-13 100.8 6.7 73 185-262 5-77 (547)
38 PRK01202 glycine cleavage syst 98.7 3.5E-08 7.5E-13 82.1 6.8 57 209-265 46-109 (127)
39 TIGR01348 PDHac_trf_long pyruv 98.7 5.2E-08 1.1E-12 98.2 8.1 59 204-262 17-75 (546)
40 KOG0369 Pyruvate carboxylase [ 98.6 3.5E-08 7.5E-13 100.7 5.9 71 182-262 1106-1176(1176)
41 PLN02744 dihydrolipoyllysine-r 98.6 1.1E-07 2.4E-12 95.8 7.2 76 183-262 113-189 (539)
42 PRK11856 branched-chain alpha- 98.6 1.4E-07 3E-12 91.6 7.7 60 204-263 20-79 (411)
43 TIGR03077 not_gcvH glycine cle 98.6 1.9E-07 4.2E-12 76.1 7.0 57 209-265 39-102 (110)
44 KOG0238 3-Methylcrotonyl-CoA c 98.5 7E-08 1.5E-12 96.0 4.5 69 183-261 602-670 (670)
45 TIGR01349 PDHac_trf_mito pyruv 98.5 1.6E-07 3.6E-12 92.3 7.0 59 204-262 17-76 (435)
46 PRK11892 pyruvate dehydrogenas 98.5 2.2E-07 4.7E-12 92.3 6.5 62 203-264 19-81 (464)
47 PRK00624 glycine cleavage syst 98.5 4.2E-07 9.1E-12 74.6 7.0 57 209-265 41-104 (114)
48 TIGR02927 SucB_Actino 2-oxoglu 98.5 2E-07 4.3E-12 94.9 6.1 75 184-262 4-78 (590)
49 KOG0557 Dihydrolipoamide acety 98.3 6.1E-07 1.3E-11 88.3 5.4 67 203-269 55-122 (470)
50 TIGR00527 gcvH glycine cleavag 98.3 1.4E-06 3.1E-11 72.5 6.5 64 202-265 35-108 (127)
51 PRK13380 glycine cleavage syst 98.2 3.7E-06 8E-11 71.6 6.2 57 209-265 53-116 (144)
52 PRK09783 copper/silver efflux 98.1 2.1E-05 4.5E-10 76.6 10.1 74 181-264 122-244 (409)
53 cd06848 GCS_H Glycine cleavage 98.1 7.3E-06 1.6E-10 64.5 5.6 52 189-249 27-78 (96)
54 TIGR00998 8a0101 efflux pump m 98.0 1.8E-05 4E-10 73.5 8.1 36 230-265 205-240 (334)
55 COG0509 GcvH Glycine cleavage 97.9 1.7E-05 3.8E-10 66.6 5.8 58 208-265 47-111 (131)
56 TIGR01730 RND_mfp RND family e 97.9 2.6E-05 5.6E-10 71.3 7.1 73 182-264 26-169 (322)
57 KOG0558 Dihydrolipoamide trans 97.9 5.7E-06 1.2E-10 79.4 2.5 62 203-264 81-142 (474)
58 PRK10476 multidrug resistance 97.8 5.1E-05 1.1E-09 71.6 7.9 34 231-264 210-243 (346)
59 TIGR03309 matur_yqeB selenium- 97.8 9.3E-05 2E-09 68.5 8.7 67 182-264 164-230 (256)
60 PRK10559 p-hydroxybenzoic acid 97.7 9.6E-05 2.1E-09 69.4 7.7 72 182-263 47-188 (310)
61 PRK15136 multidrug efflux syst 97.7 0.00012 2.5E-09 70.9 7.8 34 231-264 217-250 (390)
62 PRK09578 periplasmic multidrug 97.7 0.00012 2.6E-09 70.1 7.8 72 182-263 63-207 (385)
63 PRK03598 putative efflux pump 97.7 0.00012 2.7E-09 68.5 7.4 35 230-264 204-238 (331)
64 PF13533 Biotin_lipoyl_2: Biot 97.6 0.0001 2.2E-09 51.7 4.7 35 230-264 3-37 (50)
65 KOG0368 Acetyl-CoA carboxylase 97.6 0.0001 2.2E-09 80.8 6.7 73 182-265 685-757 (2196)
66 PF01597 GCV_H: Glycine cleava 97.6 0.00021 4.5E-09 59.1 6.5 58 208-265 39-103 (122)
67 PRK09859 multidrug efflux syst 97.5 0.00034 7.3E-09 67.2 8.0 71 182-262 61-204 (385)
68 cd06253 M14_ASTE_ASPA_like_3 A 97.5 0.00054 1.2E-08 64.3 9.1 66 182-260 229-297 (298)
69 PRK15030 multidrug efflux syst 97.5 0.00035 7.6E-09 67.5 8.0 72 182-263 65-209 (397)
70 cd06252 M14_ASTE_ASPA_like_2 A 97.4 0.0009 2E-08 63.1 9.5 68 182-262 244-315 (316)
71 PRK11578 macrolide transporter 97.3 0.00054 1.2E-08 65.3 7.2 72 182-263 61-220 (370)
72 PRK11556 multidrug efflux syst 97.3 0.0007 1.5E-08 66.0 7.3 73 181-263 86-231 (415)
73 cd06251 M14_ASTE_ASPA_like_1 A 97.3 0.0014 2.9E-08 61.1 8.8 65 183-260 220-286 (287)
74 PF13375 RnfC_N: RnfC Barrel s 97.2 0.00042 9.1E-09 55.7 4.1 41 203-244 41-81 (101)
75 PF12700 HlyD_2: HlyD family s 97.2 0.0005 1.1E-08 63.0 5.1 33 181-224 20-52 (328)
76 PRK05889 putative acetyl-CoA c 97.1 0.00077 1.7E-08 50.0 4.7 34 230-263 3-36 (71)
77 PLN02983 biotin carboxyl carri 97.1 0.019 4E-07 53.8 14.5 32 231-262 199-237 (274)
78 TIGR02994 ectoine_eutE ectoine 97.1 0.002 4.2E-08 61.5 8.3 65 183-260 256-324 (325)
79 PF13533 Biotin_lipoyl_2: Biot 97.0 0.00088 1.9E-08 46.9 3.9 37 183-229 3-39 (50)
80 TIGR02971 heterocyst_DevB ABC 97.0 0.0024 5.3E-08 59.5 7.9 33 231-264 206-238 (327)
81 cd06254 M14_ASTE_ASPA_like_4 A 97.0 0.0024 5.1E-08 59.5 7.8 65 181-258 222-288 (288)
82 cd06250 M14_PaAOTO_like An unc 97.0 0.0033 7.1E-08 60.7 8.4 67 181-260 288-358 (359)
83 PRK12784 hypothetical protein; 96.8 0.0029 6.2E-08 49.0 5.4 71 183-263 6-77 (84)
84 PRK08225 acetyl-CoA carboxylas 96.8 0.0023 5E-08 47.1 4.7 34 229-262 1-34 (70)
85 PRK06748 hypothetical protein; 96.7 0.0031 6.8E-08 49.2 5.2 34 229-262 4-37 (83)
86 COG3608 Predicted deacylase [G 96.5 0.0043 9.4E-08 59.5 5.6 66 182-260 256-324 (331)
87 KOG3373 Glycine cleavage syste 96.4 0.0035 7.6E-08 54.6 3.9 57 209-265 89-152 (172)
88 cd06850 biotinyl_domain The bi 96.4 0.0054 1.2E-07 43.3 4.2 31 232-262 2-32 (67)
89 COG0511 AccB Biotin carboxyl c 96.1 0.0083 1.8E-07 50.6 4.4 35 228-262 69-103 (140)
90 PRK06549 acetyl-CoA carboxylas 95.9 0.013 2.7E-07 49.4 4.7 33 230-262 62-94 (130)
91 PF00364 Biotin_lipoyl: Biotin 95.9 0.011 2.4E-07 44.2 3.9 33 230-262 1-39 (74)
92 PF13437 HlyD_3: HlyD family s 95.7 0.018 3.9E-07 44.8 4.7 33 231-263 1-33 (105)
93 cd06255 M14_ASTE_ASPA_like_5 A 95.6 0.045 9.7E-07 51.2 7.6 51 182-243 231-283 (293)
94 PRK10476 multidrug resistance 95.5 0.022 4.8E-07 53.8 5.3 41 221-263 42-82 (346)
95 PRK09439 PTS system glucose-sp 95.5 0.052 1.1E-06 47.6 7.0 66 183-262 21-125 (169)
96 PRK05641 putative acetyl-CoA c 95.4 0.022 4.8E-07 49.0 4.6 34 230-263 85-118 (153)
97 TIGR01936 nqrA NADH:ubiquinone 95.4 0.023 5E-07 56.6 5.2 41 204-245 41-81 (447)
98 TIGR00998 8a0101 efflux pump m 95.1 0.024 5.1E-07 52.7 4.0 35 229-263 42-76 (334)
99 TIGR01843 type_I_hlyD type I s 95.1 0.036 7.7E-07 52.7 5.2 44 221-264 35-78 (423)
100 PF04952 AstE_AspA: Succinylgl 95.0 0.064 1.4E-06 49.2 6.6 67 183-262 221-291 (292)
101 PRK05352 Na(+)-translocating N 94.9 0.031 6.7E-07 55.7 4.6 41 204-245 42-82 (448)
102 PF12700 HlyD_2: HlyD family s 94.6 0.04 8.6E-07 50.4 4.2 42 218-262 12-53 (328)
103 TIGR01945 rnfC electron transp 94.6 0.036 7.9E-07 54.7 4.2 40 204-244 43-82 (435)
104 PRK03598 putative efflux pump 94.6 0.069 1.5E-06 50.1 5.9 35 229-263 43-77 (331)
105 COG4656 RnfC Predicted NADH:ub 94.6 0.033 7.1E-07 56.4 3.8 44 204-249 45-91 (529)
106 TIGR01000 bacteriocin_acc bact 94.6 0.063 1.4E-06 52.9 5.8 43 221-263 51-93 (457)
107 TIGR01730 RND_mfp RND family e 94.6 0.068 1.5E-06 48.8 5.6 40 222-262 20-59 (322)
108 PRK15136 multidrug efflux syst 94.6 0.046 1E-06 53.0 4.6 35 229-263 61-95 (390)
109 PRK07051 hypothetical protein; 94.4 0.062 1.3E-06 40.8 4.1 35 229-263 3-44 (80)
110 PRK11556 multidrug efflux syst 94.4 0.063 1.4E-06 52.5 5.1 45 218-263 77-121 (415)
111 TIGR03794 NHPM_micro_HlyD NHPM 94.3 0.071 1.5E-06 51.8 5.3 35 229-263 58-92 (421)
112 PRK09578 periplasmic multidrug 94.3 0.07 1.5E-06 51.2 5.1 44 219-263 54-97 (385)
113 PF00358 PTS_EIIA_1: phosphoen 94.2 0.14 3E-06 43.2 6.2 65 183-261 3-106 (132)
114 PRK05035 electron transport co 94.2 0.057 1.2E-06 56.6 4.6 40 204-244 49-88 (695)
115 PRK11578 macrolide transporter 94.2 0.082 1.8E-06 50.4 5.4 43 219-262 52-94 (370)
116 PRK09859 multidrug efflux syst 94.1 0.077 1.7E-06 51.0 5.1 45 218-263 51-95 (385)
117 cd00210 PTS_IIA_glc PTS_IIA, P 94.1 0.14 3E-06 42.7 6.0 20 242-261 83-102 (124)
118 TIGR00830 PTBA PTS system, glu 94.0 0.13 2.8E-06 42.8 5.6 20 242-261 83-102 (121)
119 PRK15030 multidrug efflux syst 93.9 0.09 2E-06 50.9 5.1 43 220-263 57-99 (397)
120 PF09891 DUF2118: Uncharacteri 93.9 0.1 2.2E-06 45.1 4.8 39 206-244 94-133 (150)
121 COG2190 NagE Phosphotransferas 93.8 0.26 5.7E-06 42.8 7.2 65 183-261 6-109 (156)
122 TIGR01235 pyruv_carbox pyruvat 93.6 0.12 2.6E-06 57.1 6.0 71 181-262 1037-1107(1143)
123 PRK10559 p-hydroxybenzoic acid 93.5 0.092 2E-06 49.4 4.3 34 230-263 48-81 (310)
124 TIGR00999 8a0102 Membrane Fusi 93.3 0.13 2.8E-06 45.9 4.8 35 230-264 89-123 (265)
125 PF05896 NQRA: Na(+)-transloca 93.2 0.14 3E-06 47.8 4.9 40 205-245 42-81 (257)
126 COG1566 EmrA Multidrug resista 93.1 0.11 2.4E-06 50.3 4.3 34 230-263 54-87 (352)
127 TIGR03794 NHPM_micro_HlyD NHPM 92.3 0.18 3.9E-06 49.0 4.6 35 230-264 254-288 (421)
128 TIGR01843 type_I_hlyD type I s 92.0 0.19 4E-06 47.8 4.2 35 230-264 272-307 (423)
129 PRK09783 copper/silver efflux 91.9 0.29 6.3E-06 47.8 5.5 44 219-262 112-157 (409)
130 PRK14042 pyruvate carboxylase 91.9 0.2 4.4E-06 51.7 4.6 33 230-262 526-558 (596)
131 PF13437 HlyD_3: HlyD family s 91.7 0.23 4.9E-06 38.6 3.7 33 184-226 1-33 (105)
132 COG0845 AcrA Membrane-fusion p 91.3 0.41 8.9E-06 43.2 5.5 45 218-263 56-100 (372)
133 PRK10255 PTS system N-acetyl g 91.3 0.68 1.5E-05 48.4 7.7 66 183-262 499-603 (648)
134 TIGR01108 oadA oxaloacetate de 90.6 0.32 6.9E-06 50.1 4.6 33 230-262 518-550 (582)
135 PRK14040 oxaloacetate decarbox 90.6 0.31 6.8E-06 50.3 4.5 34 229-262 524-557 (593)
136 PRK09824 PTS system beta-gluco 90.2 0.54 1.2E-05 48.9 5.8 64 184-261 480-582 (627)
137 COG4770 Acetyl/propionyl-CoA c 89.7 0.37 8.1E-06 49.6 4.1 32 231-262 577-608 (645)
138 TIGR00164 PS_decarb_rel phosph 89.7 0.51 1.1E-05 41.6 4.5 52 206-261 134-185 (189)
139 TIGR00531 BCCP acetyl-CoA carb 89.6 0.48 1.1E-05 40.7 4.2 33 230-262 81-120 (156)
140 PF00529 HlyD: HlyD family sec 89.6 0.31 6.8E-06 44.1 3.2 34 183-226 2-35 (305)
141 TIGR01995 PTS-II-ABC-beta PTS 89.4 0.88 1.9E-05 47.1 6.6 65 184-262 464-567 (610)
142 PRK05305 phosphatidylserine de 89.4 0.55 1.2E-05 42.0 4.5 49 206-258 154-202 (206)
143 PRK09282 pyruvate carboxylase 89.3 0.49 1.1E-05 48.8 4.6 33 230-262 523-555 (592)
144 PRK12784 hypothetical protein; 89.2 0.34 7.4E-06 37.7 2.6 44 226-269 1-45 (84)
145 COG1566 EmrA Multidrug resista 89.0 0.46 9.9E-06 46.2 4.0 36 230-265 209-244 (352)
146 TIGR01000 bacteriocin_acc bact 88.9 0.56 1.2E-05 46.3 4.6 36 229-264 316-352 (457)
147 PRK06302 acetyl-CoA carboxylas 87.6 0.8 1.7E-05 39.3 4.2 33 230-262 80-119 (155)
148 COG1726 NqrA Na+-transporting 87.4 0.69 1.5E-05 45.4 4.0 42 205-249 42-85 (447)
149 PF06898 YqfD: Putative stage 86.9 4.9 0.00011 39.2 9.7 104 84-242 140-246 (385)
150 cd06849 lipoyl_domain Lipoyl d 86.9 1.1 2.4E-05 30.6 3.9 31 233-263 10-40 (74)
151 TIGR02712 urea_carbox urea car 86.1 0.89 1.9E-05 50.6 4.6 33 230-262 1133-1165(1201)
152 PF07831 PYNP_C: Pyrimidine nu 85.1 1.2 2.5E-05 33.9 3.5 28 188-227 30-57 (75)
153 PRK12999 pyruvate carboxylase; 84.5 1.2 2.6E-05 49.4 4.6 33 230-262 1077-1109(1146)
154 TIGR02876 spore_yqfD sporulati 84.0 13 0.00029 36.3 11.1 37 84-122 137-173 (382)
155 PRK14875 acetoin dehydrogenase 82.9 1.8 4E-05 39.9 4.5 36 182-227 45-80 (371)
156 PRK09439 PTS system glucose-sp 82.4 2.9 6.3E-05 36.7 5.3 26 201-226 101-126 (169)
157 PTZ00144 dihydrolipoamide succ 82.0 1.6 3.4E-05 43.4 3.9 27 236-262 57-83 (418)
158 PF02666 PS_Dcarbxylase: Phosp 81.7 2.4 5.1E-05 37.5 4.6 63 183-258 137-201 (202)
159 cd06663 Biotinyl_lipoyl_domain 81.6 2.4 5.3E-05 30.7 3.9 27 236-262 12-38 (73)
160 TIGR01995 PTS-II-ABC-beta PTS 81.1 2.5 5.4E-05 43.9 5.1 60 201-260 543-609 (610)
161 PLN02226 2-oxoglutarate dehydr 79.5 2.1 4.5E-05 43.1 3.9 27 236-262 104-130 (463)
162 PRK09824 PTS system beta-gluco 78.9 3.5 7.6E-05 43.0 5.4 61 201-261 559-626 (627)
163 COG1038 PycA Pyruvate carboxyl 77.7 2.8 6E-05 45.2 4.2 69 181-261 1042-1111(1149)
164 KOG0238 3-Methylcrotonyl-CoA c 77.0 2.2 4.7E-05 43.8 3.1 30 232-261 604-633 (670)
165 PRK03934 phosphatidylserine de 76.9 4.3 9.3E-05 37.8 4.9 76 182-260 184-265 (265)
166 COG2190 NagE Phosphotransferas 76.2 4.6 9.9E-05 35.2 4.5 61 201-261 86-154 (156)
167 COG4072 Uncharacterized protei 75.6 7.5 0.00016 33.5 5.5 54 181-244 90-144 (161)
168 KOG0369 Pyruvate carboxylase [ 75.6 2.3 4.9E-05 45.1 2.9 31 231-261 1108-1138(1176)
169 PRK02597 rpoC2 DNA-directed RN 75.3 6.6 0.00014 44.3 6.5 60 202-261 401-507 (1331)
170 PRK14844 bifunctional DNA-dire 75.3 3.7 7.9E-05 49.1 4.7 36 203-240 2421-2456(2836)
171 TIGR00830 PTBA PTS system, glu 72.9 2.4 5.3E-05 35.2 1.9 25 201-225 79-103 (121)
172 PRK11637 AmiB activator; Provi 70.3 10 0.00022 37.2 6.0 21 205-225 380-400 (428)
173 PRK10255 PTS system N-acetyl g 70.2 7.8 0.00017 40.7 5.3 46 183-228 536-606 (648)
174 cd06251 M14_ASTE_ASPA_like_1 A 70.0 7.8 0.00017 36.1 4.9 38 227-265 217-254 (287)
175 cd00210 PTS_IIA_glc PTS_IIA, P 69.9 3.2 6.8E-05 34.6 2.0 25 201-225 79-103 (124)
176 COG0508 AceF Pyruvate/2-oxoglu 69.0 5 0.00011 39.5 3.5 39 179-227 42-80 (404)
177 PRK05704 dihydrolipoamide succ 69.0 6.8 0.00015 38.7 4.4 39 179-227 42-80 (407)
178 KOG0368 Acetyl-CoA carboxylase 68.6 6.9 0.00015 44.8 4.7 52 210-261 666-717 (2196)
179 PF00358 PTS_EIIA_1: phosphoen 67.8 3.2 6.8E-05 35.0 1.6 28 201-228 83-110 (132)
180 PF06898 YqfD: Putative stage 65.8 7.4 0.00016 38.0 3.9 34 226-259 186-226 (385)
181 TIGR01347 sucB 2-oxoglutarate 64.9 9 0.0002 37.8 4.4 37 180-226 41-77 (403)
182 TIGR03309 matur_yqeB selenium- 64.8 7.9 0.00017 36.2 3.7 34 227-261 162-195 (256)
183 PF07831 PYNP_C: Pyrimidine nu 64.7 7.9 0.00017 29.4 3.1 26 241-266 34-59 (75)
184 KOG0559 Dihydrolipoamide succi 63.8 5 0.00011 39.6 2.3 36 181-226 114-149 (457)
185 COG0845 AcrA Membrane-fusion p 63.6 7.5 0.00016 34.9 3.3 33 183-225 67-99 (372)
186 TIGR00999 8a0102 Membrane Fusi 63.5 9.1 0.0002 34.1 3.8 32 183-224 89-120 (265)
187 PLN02744 dihydrolipoyllysine-r 62.4 8 0.00017 39.8 3.6 28 236-263 125-152 (539)
188 PRK04192 V-type ATP synthase s 62.1 19 0.00042 37.5 6.2 54 206-263 122-180 (586)
189 TIGR02876 spore_yqfD sporulati 62.0 7.9 0.00017 37.9 3.4 31 229-259 186-223 (382)
190 PF02749 QRPTase_N: Quinolinat 62.0 6.2 0.00013 30.4 2.1 21 205-225 48-68 (88)
191 PRK03140 phosphatidylserine de 61.7 10 0.00022 35.1 3.9 64 183-259 194-257 (259)
192 PF01551 Peptidase_M23: Peptid 61.7 5.9 0.00013 30.3 2.0 24 204-227 53-76 (96)
193 cd01134 V_A-ATPase_A V/A-type 60.6 20 0.00044 35.2 5.9 54 206-261 53-109 (369)
194 PLN02528 2-oxoisovalerate dehy 59.8 14 0.0003 36.6 4.7 38 180-227 39-76 (416)
195 TIGR02645 ARCH_P_rylase putati 59.5 15 0.00033 37.4 5.0 45 221-265 405-473 (493)
196 cd06253 M14_ASTE_ASPA_like_3 A 59.4 14 0.00031 34.7 4.5 37 229-266 229-265 (298)
197 PF01551 Peptidase_M23: Peptid 58.9 16 0.00034 27.8 3.9 23 240-262 52-74 (96)
198 cd06255 M14_ASTE_ASPA_like_5 A 58.8 17 0.00036 34.0 4.8 37 229-266 231-267 (293)
199 COG5007 Predicted transcriptio 56.8 22 0.00048 27.7 4.3 32 86-120 1-32 (80)
200 TIGR00163 PS_decarb phosphatid 55.4 18 0.00039 33.1 4.3 47 211-258 189-235 (238)
201 PF02749 QRPTase_N: Quinolinat 54.7 12 0.00026 28.7 2.7 25 238-262 44-68 (88)
202 PRK04350 thymidine phosphoryla 54.5 21 0.00046 36.3 5.0 43 223-265 399-465 (490)
203 COG3608 Predicted deacylase [G 52.3 17 0.00036 35.3 3.7 32 231-263 258-289 (331)
204 cd06250 M14_PaAOTO_like An unc 51.9 25 0.00053 34.1 4.9 36 230-266 290-325 (359)
205 PF05896 NQRA: Na(+)-transloca 51.6 9 0.0002 35.9 1.7 30 232-261 32-61 (257)
206 PRK10871 nlpD lipoprotein NlpD 51.6 28 0.00062 33.5 5.2 22 242-263 271-292 (319)
207 TIGR03327 AMP_phos AMP phospho 51.1 25 0.00055 35.9 4.9 43 223-265 408-474 (500)
208 cd06910 M14_ASTE_ASPA_like_7 A 50.8 29 0.00062 32.1 4.9 45 208-259 226-271 (272)
209 TIGR01349 PDHac_trf_mito pyruv 50.7 21 0.00045 35.6 4.2 35 182-226 42-77 (435)
210 PRK14698 V-type ATP synthase s 50.2 26 0.00056 38.8 5.2 58 206-265 122-182 (1017)
211 TIGR02971 heterocyst_DevB ABC 50.0 40 0.00088 31.2 5.9 32 182-224 204-235 (327)
212 cd06254 M14_ASTE_ASPA_like_4 A 47.6 33 0.00072 31.8 4.9 38 227-265 221-258 (288)
213 PHA02772 hypothetical protein; 47.5 23 0.00051 28.5 3.3 26 86-111 1-26 (95)
214 PRK11856 branched-chain alpha- 46.8 28 0.00061 34.0 4.5 36 182-227 45-80 (411)
215 COG4942 Membrane-bound metallo 44.2 42 0.0009 33.7 5.1 62 183-263 332-393 (420)
216 TIGR01042 V-ATPase_V1_A V-type 43.5 50 0.0011 34.5 5.8 54 207-262 123-179 (591)
217 PRK05820 deoA thymidine phosph 43.3 36 0.00079 34.2 4.6 40 226-265 337-407 (440)
218 TIGR02994 ectoine_eutE ectoine 43.2 35 0.00075 32.7 4.4 32 231-263 257-288 (325)
219 TIGR02644 Y_phosphoryl pyrimid 43.1 43 0.00093 33.3 5.1 41 225-265 329-400 (405)
220 PRK10871 nlpD lipoprotein NlpD 42.3 28 0.0006 33.6 3.5 44 183-226 230-292 (319)
221 PRK00044 psd phosphatidylserin 41.8 23 0.0005 33.3 2.9 49 211-261 237-286 (288)
222 TIGR02643 T_phosphoryl thymidi 41.7 39 0.00085 34.0 4.6 40 226-265 336-406 (437)
223 COG1155 NtpA Archaeal/vacuolar 41.7 72 0.0016 33.1 6.4 59 206-265 120-180 (588)
224 TIGR02388 rpoC2_cyan DNA-direc 40.4 53 0.0011 37.2 5.7 40 202-241 401-447 (1227)
225 CHL00117 rpoC2 RNA polymerase 40.3 25 0.00054 40.1 3.3 40 202-241 402-449 (1364)
226 KOG2419 Phosphatidylserine dec 40.2 19 0.00041 38.2 2.1 35 182-227 885-919 (975)
227 cd06848 GCS_H Glycine cleavage 40.0 32 0.00069 26.7 3.0 30 234-263 25-55 (96)
228 PF09891 DUF2118: Uncharacteri 39.4 44 0.00095 28.9 4.0 44 211-265 73-116 (150)
229 PRK09603 bifunctional DNA-dire 39.2 46 0.00099 40.6 5.2 23 202-224 2612-2634(2890)
230 PRK09603 bifunctional DNA-dire 38.8 52 0.0011 40.2 5.5 60 204-265 2513-2638(2890)
231 cd06252 M14_ASTE_ASPA_like_2 A 38.3 75 0.0016 30.0 5.8 36 228-264 243-278 (316)
232 KOG0557 Dihydrolipoamide acety 37.2 30 0.00066 35.0 3.0 27 237-263 52-78 (470)
233 PRK02597 rpoC2 DNA-directed RN 37.1 44 0.00094 38.1 4.5 22 202-223 948-969 (1331)
234 PRK06078 pyrimidine-nucleoside 36.2 58 0.0012 32.8 4.8 38 225-262 331-399 (434)
235 PRK06149 hypothetical protein; 35.0 31 0.00067 37.7 2.9 39 183-225 443-496 (972)
236 COG0739 NlpD Membrane proteins 34.3 29 0.00064 30.8 2.2 20 205-224 215-234 (277)
237 COG0157 NadC Nicotinate-nucleo 33.1 30 0.00065 32.9 2.1 21 205-225 67-87 (280)
238 KOG1668 Elongation factor 1 be 32.2 34 0.00074 31.6 2.3 36 188-231 172-207 (231)
239 COG4072 Uncharacterized protei 32.1 1E+02 0.0022 26.7 4.9 33 235-267 97-129 (161)
240 PHA01624 hypothetical protein 30.4 62 0.0014 26.4 3.2 26 86-111 1-26 (102)
241 PRK11892 pyruvate dehydrogenas 30.2 61 0.0013 32.7 3.9 35 182-226 45-80 (464)
242 PHA02771 hypothetical protein; 29.1 30 0.00065 27.6 1.2 26 86-111 1-26 (90)
243 TIGR02643 T_phosphoryl thymidi 28.8 39 0.00086 34.0 2.3 22 204-225 382-403 (437)
244 PRK05820 deoA thymidine phosph 28.1 42 0.0009 33.8 2.3 23 204-226 383-405 (440)
245 PTZ00403 phosphatidylserine de 27.2 1.1E+02 0.0023 30.0 4.9 81 182-265 248-343 (353)
246 PRK06078 pyrimidine-nucleoside 26.6 46 0.00099 33.5 2.3 24 204-227 378-401 (434)
247 TIGR02645 ARCH_P_rylase putati 26.3 43 0.00092 34.3 2.0 45 182-226 413-471 (493)
248 PRK04350 thymidine phosphoryla 25.8 45 0.00097 34.1 2.1 45 182-226 405-463 (490)
249 cd01572 QPRTase Quinolinate ph 25.4 81 0.0018 29.4 3.6 27 237-263 56-82 (268)
250 TIGR01043 ATP_syn_A_arch ATP s 25.4 83 0.0018 32.8 3.9 54 206-261 119-175 (578)
251 PF02666 PS_Dcarbxylase: Phosp 25.0 47 0.001 29.2 1.8 18 205-222 185-202 (202)
252 PRK10718 RpoE-regulated lipopr 24.4 1.2E+02 0.0026 27.3 4.3 43 208-251 70-115 (191)
253 TIGR02644 Y_phosphoryl pyrimid 24.1 54 0.0012 32.7 2.2 23 204-226 376-398 (405)
254 PRK13380 glycine cleavage syst 23.7 81 0.0018 26.8 3.0 33 230-262 36-69 (144)
255 TIGR03327 AMP_phos AMP phospho 23.7 54 0.0012 33.6 2.2 24 203-226 449-472 (500)
256 cd01572 QPRTase Quinolinate ph 23.4 53 0.0012 30.6 2.0 21 205-225 61-81 (268)
257 PRK11649 putative peptidase; P 23.4 63 0.0014 32.3 2.6 21 205-225 364-384 (439)
258 PF01333 Apocytochr_F_C: Apocy 22.3 37 0.00081 28.3 0.6 20 202-221 42-61 (118)
259 PRK08072 nicotinate-nucleotide 21.6 60 0.0013 30.5 2.0 21 204-224 66-86 (277)
260 PRK14844 bifunctional DNA-dire 21.2 1.6E+02 0.0036 36.2 5.6 82 182-265 2300-2446(2836)
261 TIGR00164 PS_decarb_rel phosph 20.8 77 0.0017 27.8 2.3 20 202-221 163-182 (189)
262 CHL00117 rpoC2 RNA polymerase 20.6 3.1E+02 0.0066 31.8 7.4 76 183-264 350-427 (1364)
263 PRK05305 phosphatidylserine de 20.6 73 0.0016 28.4 2.2 19 202-220 183-201 (206)
264 PRK06096 molybdenum transport 20.2 66 0.0014 30.5 1.9 20 205-224 64-83 (284)
265 PRK00109 Holliday junction res 20.2 40 0.00087 28.2 0.4 15 10-24 3-17 (138)
No 1
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=100.00 E-value=7.5e-32 Score=230.64 Aligned_cols=156 Identities=29% Similarity=0.521 Sum_probs=112.5
Q ss_pred CCHHHHHHHHHHHHhcCCccEEEEEeCCEEEEEEecCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCccccCCCCC
Q 024168 86 PDSSEVESLVTDICNTTSVAEFELKLDGFRLYVTRDIAGDSIPPLPPSSPAPVTVNKPADRPDSNGSVPTSSLAITKPVS 165 (271)
Q Consensus 86 md~~eI~~Li~~l~~~S~l~eLelk~~~~~L~L~k~~~~~~~~~~p~~~~a~~~~~~~~~ap~~~~~~~~~s~~~~~pa~ 165 (271)
||+++|++||+ ++++|+|+||+|+.+|++|+|+|+........ ..+.+++.....+ ++..+ . ....+...+++
T Consensus 1 Md~~~Ik~Li~-~~~~s~l~elei~~~~~~l~l~k~~~~~~~~~-~~~~~~~~~~~~~--~~~~~--~-~~~~~~~~~~~ 73 (156)
T TIGR00531 1 MNIREIKELIK-LIEESGITELELKEEEFEVRLSKAAAAAKKSA-VQQAAAPVPAQVP--AAPSA--Q-APAPAVCAPAP 73 (156)
T ss_pred CCHHHHHHHHH-HHHHCCCcEEEEEeCCEEEEEEecCCCCcccc-ccccCCCccccCC--CCCCC--C-CCCCCCCCCCc
Confidence 89999999997 77999999999999999999999643211100 0000011000000 00000 0 00000000000
Q ss_pred CCCCccccccccCCCCceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEec
Q 024168 166 SSGGIQTLLDKAADEGLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILR 245 (271)
Q Consensus 166 ~~~~~~~~~e~a~~~~~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv 245 (271)
.....+...|+|||+|+||++++ |+.+|||++||.|++||+||+||+||++++|+|+++|+|.+|++
T Consensus 74 ----------~~~~~~~~~v~sp~~G~~~~~~~---P~~~~~v~~Gd~V~~Gq~l~iiEamK~~~eI~A~~~G~v~~i~v 140 (156)
T TIGR00531 74 ----------AKADKKGHFVRSPMVGTFYRAPS---PDAKPFVEVGDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEILV 140 (156)
T ss_pred ----------ccccCCCCEEeCCCCEEEEecCC---CCCCccccCCCEeCCCCEEEEEEecccceEEecCCCcEEEEEEe
Confidence 01122346799999999999986 99999999999999999999999999999999999999999999
Q ss_pred CCCCcccCCCeEEEEe
Q 024168 246 KDGDPIGYGDPLIVIL 261 (271)
Q Consensus 246 ~~Gd~V~~Gq~L~~I~ 261 (271)
++|+.|+|||+||+|+
T Consensus 141 ~~g~~V~~Gq~L~~i~ 156 (156)
T TIGR00531 141 ENGQPVEYGQPLIVIE 156 (156)
T ss_pred CCCCEECCCCEEEEEC
Confidence 9999999999999984
No 2
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.98 E-value=4.6e-31 Score=225.48 Aligned_cols=155 Identities=32% Similarity=0.534 Sum_probs=112.0
Q ss_pred CCHHHHHHHHHHHHhcCCccEEEEEeCCEEEEEEecCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCccccCCCCC
Q 024168 86 PDSSEVESLVTDICNTTSVAEFELKLDGFRLYVTRDIAGDSIPPLPPSSPAPVTVNKPADRPDSNGSVPTSSLAITKPVS 165 (271)
Q Consensus 86 md~~eI~~Li~~l~~~S~l~eLelk~~~~~L~L~k~~~~~~~~~~p~~~~a~~~~~~~~~ap~~~~~~~~~s~~~~~pa~ 165 (271)
||+++|++||+ ++++|+|+||+|+.+|++|+|+|+......+.......++... .+...++. ...+. ..+..
T Consensus 1 Md~~~I~~Li~-~~~~s~l~ele~~~~~~~i~l~k~~~~~~~~~~~~~~~~p~~~-~~~~~~~~-----~~~~~-~~~~~ 72 (155)
T PRK06302 1 MDIRKIKKLIE-LVDESGISEFEIKEGEESVRISRAAAAPVAPVAQQAAAAPVAA-APAAAAAA-----AAAPA-AAPAA 72 (155)
T ss_pred CCHHHHHHHHH-HHHHCCCeEEEEEcCCEEEEEEeCCCCCccccccccccCCCCC-CCCCCCcc-----ccCCC-CCCCC
Confidence 89999999997 7799999999999999999999964321100000000001000 00000000 00000 00000
Q ss_pred CCCCccccccccCCCCceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEec
Q 024168 166 SSGGIQTLLDKAADEGLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILR 245 (271)
Q Consensus 166 ~~~~~~~~~e~a~~~~~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv 245 (271)
. ....+...|+|||+|+||++|+ |+.+|||++||.|++||+||+||+||++++|+|+++|+|++|++
T Consensus 73 ---------~-~~~~~~~~v~sp~~G~~~~~~s---P~~~~~v~~Gd~V~~Gq~l~~iEamK~~~eI~a~~~G~i~~i~v 139 (155)
T PRK06302 73 ---------A-AAEAEGHVVTSPMVGTFYRAPS---PDAPPFVEVGDTVKEGQTLCIIEAMKVMNEIEADKSGVVTEILV 139 (155)
T ss_pred ---------C-ccCCCCCEEeCCcCEEEEecCC---CCCCcccCCCCEeCCCCEEEEEEecccceEEecCCCeEEEEEEc
Confidence 0 1112336799999999999986 99999999999999999999999999999999999999999999
Q ss_pred CCCCcccCCCeEEEEe
Q 024168 246 KDGDPIGYGDPLIVIL 261 (271)
Q Consensus 246 ~~Gd~V~~Gq~L~~I~ 261 (271)
++|+.|+|||+||+|+
T Consensus 140 ~~g~~V~~Gq~L~~i~ 155 (155)
T PRK06302 140 ENGQPVEFGQPLFVIE 155 (155)
T ss_pred CCCCEeCCCCEEEEeC
Confidence 9999999999999984
No 3
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=99.95 E-value=2.7e-27 Score=199.17 Aligned_cols=140 Identities=33% Similarity=0.506 Sum_probs=98.8
Q ss_pred HHHHHHHHHhcCCccEEEEEeCCEEEEEEecCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCccccCCCCCCCCCc
Q 024168 91 VESLVTDICNTTSVAEFELKLDGFRLYVTRDIAGDSIPPLPPSSPAPVTVNKPADRPDSNGSVPTSSLAITKPVSSSGGI 170 (271)
Q Consensus 91 I~~Li~~l~~~S~l~eLelk~~~~~L~L~k~~~~~~~~~~p~~~~a~~~~~~~~~ap~~~~~~~~~s~~~~~pa~~~~~~ 170 (271)
|++|+. ++.++++.+|+++.+++++++.|........ ....+.... .+....+ .+.++. ..+.+
T Consensus 1 i~~l~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~----~~~~~~--~~~~~----- 64 (140)
T COG0511 1 IKELIK-LVVESDGTEFEVKVEEGEVRLSRKTPVVQDV--PAPAPIEAS--SPSAAAA----QPAASA--PAPAP----- 64 (140)
T ss_pred Ccchhh-heeeeCcEEEEEEeCCcEEEEeecccccccc--ccccccccc--ccccccc----Cccccc--ccCCc-----
Confidence 356786 6689999999999999999999976110000 000000000 0000000 000000 00110
Q ss_pred cccccccCCCCceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCc
Q 024168 171 QTLLDKAADEGLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDP 250 (271)
Q Consensus 171 ~~~~e~a~~~~~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~ 250 (271)
+...+...|+|||+|+||+ +||++||.|++||+||+||+|||+|+|.||.+|+|.+|++++||.
T Consensus 65 ------~~~~~~~~V~SPm~Gtv~~----------~~V~vGd~V~~Gq~l~IiEAMKmeneI~A~~~G~V~~Ilv~~G~~ 128 (140)
T COG0511 65 ------AAAAGGTQVTSPMVGTVYK----------PFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGDP 128 (140)
T ss_pred ------cccccCceEecCcceEEEE----------EeeccCCEEcCCCEEEEEEeeeccceecCCCCcEEEEEEecCCCc
Confidence 1111456899999999996 699999999999999999999999999999999999999999999
Q ss_pred ccCCCeEEEEec
Q 024168 251 IGYGDPLIVILP 262 (271)
Q Consensus 251 V~~Gq~L~~I~~ 262 (271)
|+|||+|++|++
T Consensus 129 Ve~G~~L~~I~~ 140 (140)
T COG0511 129 VEYGDPLAVIEP 140 (140)
T ss_pred cCCCCEEEEecC
Confidence 999999999974
No 4
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=99.93 E-value=1.7e-24 Score=198.18 Aligned_cols=163 Identities=34% Similarity=0.518 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHhcCCccEEEEEeCCEEEEEEecCCCCCCCC-CCC-C-CCCCcCCCCCCCCCCC--CCCCCCCccccCCC
Q 024168 89 SEVESLVTDICNTTSVAEFELKLDGFRLYVTRDIAGDSIPP-LPP-S-SPAPVTVNKPADRPDS--NGSVPTSSLAITKP 163 (271)
Q Consensus 89 ~eI~~Li~~l~~~S~l~eLelk~~~~~L~L~k~~~~~~~~~-~p~-~-~~a~~~~~~~~~ap~~--~~~~~~~s~~~~~p 163 (271)
.++..|++ ++|..+|.||+|+.-|++|-|+|...-...+. .+. . .+.......+...++. +.+.+.++ +...+
T Consensus 107 ~qv~~lv~-lv~~~di~e~~lk~~~~e~~irkkeal~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~~ 184 (274)
T PLN02983 107 TQVSSLVK-LVDSRDIVELQLKQLDCELVIRKKEALPQPPPPAPVVMMQPPPPHAMPPASPPAAQPAPSAPASS-PPPTP 184 (274)
T ss_pred HHHHHHHh-hhccccceeeeccccceEEEEecccccCCCCCCCceEEecCCCcccCCCCCCcccCCCCCCCCCC-CCCCC
Confidence 45556775 88999999999999999999999875432110 000 0 0000000000000000 00000000 00000
Q ss_pred CCCCCCccccccccCCCCceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEE
Q 024168 164 VSSSGGIQTLLDKAADEGLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKI 243 (271)
Q Consensus 164 a~~~~~~~~~~e~a~~~~~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~I 243 (271)
+ .+....+...+...|+|||.|+||+.|. ++..|+|++||.|++||+||+||+||++++|+|+++|+|++|
T Consensus 185 ~------~~~~~~~~~s~~~~V~APmaGtf~r~p~---pge~w~VkvGDsVkkGQvLavIEAMKmeieV~AP~sGtV~eI 255 (274)
T PLN02983 185 A------SPPPAKAPKSSHPPLKSPMAGTFYRSPA---PGEPPFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIVEI 255 (274)
T ss_pred C------CCCCCCCCcCCCCeEeCCcCeEEEeccC---CCCcceeCCCCEecCCCEEEEEEeeceeeEEecCCCeEEEEE
Confidence 0 0111123456668899999999999885 788999999999999999999999999999999999999999
Q ss_pred ecCCCCcccCCCeEEEEec
Q 024168 244 LRKDGDPIGYGDPLIVILP 262 (271)
Q Consensus 244 lv~~Gd~V~~Gq~L~~I~~ 262 (271)
++++||.|.+|++||+|+|
T Consensus 256 lVkeGD~V~vGqpL~~IEP 274 (274)
T PLN02983 256 LAEDGKPVSVDTPLFVIEP 274 (274)
T ss_pred ecCCCCEeCCCCEEEEecC
Confidence 9999999999999999964
No 5
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=99.72 E-value=8e-18 Score=126.80 Aligned_cols=73 Identities=25% Similarity=0.411 Sum_probs=69.7
Q ss_pred EEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEE
Q 024168 184 ILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVI 260 (271)
Q Consensus 184 ~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I 260 (271)
.|++|+.|.+++.. ...+|+|++||.|++||+||.||+||+..+|+||.+|+|.++++++|+.|.+|++|++|
T Consensus 2 ~i~~P~~G~~~~~~----~i~~~~v~~G~~V~~G~~l~~iet~K~~~~v~a~~~G~i~~i~v~~G~~V~~G~~l~~I 74 (74)
T PF00364_consen 2 EIKAPMLGEVMEEG----TITKWLVEEGDKVKKGDPLAEIETMKMEMEVEAPVSGIIKEILVEEGDTVEVGQVLAII 74 (74)
T ss_dssp EEEESSSSEEEEEE----EEEEESSSTTEEESTTSEEEEEESSSEEEEEEBSSSEEEEEESSTTTEEEETTSEEEEE
T ss_pred EEECCCCccEEEec----ceeEEEECCCCEEEcCceEEEEEcCccceEEECCCCEEEEEEEECCCCEECCCCEEEEC
Confidence 69999999999875 56889999999999999999999999999999999999999999999999999999986
No 6
>PRK07051 hypothetical protein; Validated
Probab=99.68 E-value=3.7e-16 Score=119.46 Aligned_cols=76 Identities=32% Similarity=0.473 Sum_probs=72.4
Q ss_pred eEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEe
Q 024168 183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVIL 261 (271)
Q Consensus 183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~ 261 (271)
..|+||+.|+||+++. |..++++++||.|++||+|+.+|+||+..+|+||.+|+|.++++++|+.|.+|++|+++.
T Consensus 4 ~~~~ap~~g~~~~~~~---~~~~~~v~~Gd~V~~g~~l~~ve~~k~~~~i~a~~~G~v~~i~~~~G~~V~~G~~l~~i~ 79 (80)
T PRK07051 4 HEIVSPLPGTFYRRPS---PDAPPYVEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLVEDGEPVEAGQVLARIE 79 (80)
T ss_pred cEEeCCCceEEEecCC---CCCCCccCCCCEECCCCEEEEEEEcceEEEEeCCCCEEEEEEEcCCcCEECCCCEEEEEe
Confidence 4699999999999875 788999999999999999999999999999999999999999999999999999999984
No 7
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=99.65 E-value=7.5e-16 Score=114.96 Aligned_cols=67 Identities=28% Similarity=0.395 Sum_probs=64.6
Q ss_pred EEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEE
Q 024168 184 ILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVI 260 (271)
Q Consensus 184 ~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I 260 (271)
.|+||+.|+++. |+|++||.|++||+|+.+|+||+..+|+||++|+|.++++++|+.|..|++|++|
T Consensus 4 ~v~a~~~G~i~~----------~~v~~Gd~V~~g~~l~~ve~~K~~~~I~a~~~G~V~~i~v~~G~~V~~G~~l~~i 70 (71)
T PRK05889 4 DVRAEIVASVLE----------VVVNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVSVGDVIQAGDLIAVI 70 (71)
T ss_pred EEeCCCCEEEEE----------EEeCCCCEECCCCEEEEEEeccceeEEeCCCCEEEEEEEeCCCCEECCCCEEEEE
Confidence 599999999974 8999999999999999999999999999999999999999999999999999987
No 8
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.64 E-value=1.1e-14 Score=121.80 Aligned_cols=70 Identities=30% Similarity=0.313 Sum_probs=66.7
Q ss_pred CceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEE
Q 024168 181 GLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVI 260 (271)
Q Consensus 181 ~~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I 260 (271)
+...|+||+.|+++. |+|++||.|++||+|+.||+||+.++|.||.+|+|.+|+++.||.|..|++|++|
T Consensus 60 ~~~~v~Ap~~G~V~~----------i~V~~Gd~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I 129 (130)
T PRK06549 60 GADAMPSPMPGTILK----------VLVAVGDQVTENQPLLILEAMKMENEIVASSAGTVTAIHVTPGQVVNPGDGLITI 129 (130)
T ss_pred CCcEEECCCCEEEEE----------EEeCCCCEECCCCEEEEEeccCccEEEEcCCCeEEEEEEeCCCCEeCCCCEEEEe
Confidence 457899999999974 8899999999999999999999999999999999999999999999999999987
No 9
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.60 E-value=4.2e-15 Score=110.25 Aligned_cols=68 Identities=34% Similarity=0.404 Sum_probs=65.1
Q ss_pred EEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEe
Q 024168 184 ILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVIL 261 (271)
Q Consensus 184 ~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~ 261 (271)
.|.||+.|.|++ |++++||.|++||+|+.||+||+..+|.|+.+|+|.++++++|+.|..|++|++|+
T Consensus 3 ~i~a~~~G~i~~----------~~v~~G~~V~~g~~l~~ve~~k~~~~v~s~~~G~v~~~~~~~G~~V~~g~~l~~ie 70 (70)
T PRK08225 3 KVYASMAGNVWK----------IVVKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQEGDFVNEGDVLLEIE 70 (70)
T ss_pred eEeCCCCEEEEE----------EEeCCCCEECCCCEEEEEEcCCCcceEeCCCCEEEEEEEecCCCEECCCCEEEEEC
Confidence 589999999985 78999999999999999999999999999999999999999999999999999984
No 10
>PRK06748 hypothetical protein; Validated
Probab=99.57 E-value=1.3e-14 Score=112.73 Aligned_cols=71 Identities=23% Similarity=0.209 Sum_probs=66.3
Q ss_pred ceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEe-cCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEE
Q 024168 182 LVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQ-LGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVI 260 (271)
Q Consensus 182 ~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEa-mK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I 260 (271)
+..|+||+.|++. .|++++||.|++||+|+.||+ .|.+.+|.||.+|+|.+|+++.||.|..|++|+.|
T Consensus 4 ~~~v~sp~~G~I~----------~w~vk~GD~V~~gd~l~~IETMdK~~~ei~Ap~~G~v~~i~v~~Gd~V~vG~~la~I 73 (83)
T PRK06748 4 IEGVYSPCYGKVE----------KLFVRESSYVYEWEKLALIETIDKQKVEIKVGISGYIESLEVVEGQAIADQKLLITV 73 (83)
T ss_pred eeEEecCCcEEEE----------EEEeCCCCEECCCCEEEEEEcCCCceEEEecCCCEEEEEEEeCCCCEECCCCEEEEE
Confidence 4679999999996 489999999999999999999 57888999999999999999999999999999999
Q ss_pred ec
Q 024168 261 LP 262 (271)
Q Consensus 261 ~~ 262 (271)
..
T Consensus 74 ~~ 75 (83)
T PRK06748 74 RD 75 (83)
T ss_pred EC
Confidence 64
No 11
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.57 E-value=5.9e-14 Score=120.22 Aligned_cols=70 Identities=36% Similarity=0.473 Sum_probs=66.2
Q ss_pred CceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEE
Q 024168 181 GLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVI 260 (271)
Q Consensus 181 ~~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I 260 (271)
+...|+||+.|+++. |+|++||.|++||+|++||+||+.++|.|+.+|+|.++++++||.|..||+|++|
T Consensus 83 ~~~~v~ap~~G~I~~----------~~V~~Gd~V~~Gq~l~~iEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~Gq~L~~I 152 (153)
T PRK05641 83 GENVVTAPMPGKILR----------ILVREGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKEGDTVDTGQPLIEL 152 (153)
T ss_pred CCCEEECCCCeEEEE----------EEeCCCCEEcCCCEEEEEeecccceEEecCCCeEEEEEEcCCCCEECCCCEEEEe
Confidence 335799999999974 8999999999999999999999999999999999999999999999999999987
No 12
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=99.45 E-value=3.3e-13 Score=96.73 Aligned_cols=66 Identities=33% Similarity=0.475 Sum_probs=62.6
Q ss_pred EeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEE
Q 024168 185 LESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVI 260 (271)
Q Consensus 185 V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I 260 (271)
|+||+.|.|.+ |++++||.|++||+|+.|+++++..+|+||.+|+|..+++++|+.|..|++|+.|
T Consensus 2 v~a~~~G~v~~----------~~v~~G~~v~~g~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~V~~G~~l~~i 67 (67)
T cd06850 2 VTAPMPGTVVK----------VLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQVEAGQLLVVI 67 (67)
T ss_pred ccCCccEEEEE----------EEeCCCCEECCCCEEEEEEcccEEEEEeCCCCEEEEEEEECCCCEECCCCEEEEC
Confidence 78999999964 7899999999999999999999999999999999999999999999999999975
No 13
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=99.35 E-value=2.7e-12 Score=130.14 Aligned_cols=70 Identities=24% Similarity=0.259 Sum_probs=66.6
Q ss_pred eEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168 183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILP 262 (271)
Q Consensus 183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~ 262 (271)
..|.|||.|++.. |+|++||.|++||+|++||+||+.++|+||++|+|.++++++|+.|..|++|+.|+.
T Consensus 526 ~~v~apm~G~V~~----------~~V~~Gd~V~~Gq~L~~iEamKme~eV~AP~~GvV~~i~v~~Gd~V~~G~~L~~I~~ 595 (596)
T PRK14042 526 GDITVAIPGSIIA----------IHVSAGDEVKAGQAVLVIEAMKMETEIKAPANGVVAEILCQKGDKVTPGQVLIRVEV 595 (596)
T ss_pred CeEecCcceEEEE----------EEeCCCCEeCCCCEEEEEEecceeeEEecCCCeEEEEEEeCCcCEECCCCEEEEEeC
Confidence 3699999999974 889999999999999999999999999999999999999999999999999999964
No 14
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=99.28 E-value=5.9e-11 Score=120.43 Aligned_cols=68 Identities=34% Similarity=0.460 Sum_probs=65.3
Q ss_pred eEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEE
Q 024168 183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVI 260 (271)
Q Consensus 183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I 260 (271)
..|+|||.|.++. |+|++||.|++||+|+.||+||+.++|.||++|+|.++++++|+.|..|++|+.|
T Consensus 525 ~~V~Ap~~G~I~~----------~~V~~Gd~V~~Gd~l~~iEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I 592 (593)
T PRK14040 525 EPVTAPLAGNIFK----------VIVTEGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKEGDAVAVGDTLLTL 592 (593)
T ss_pred ceEECCccEEEEE----------EEeCCCCEeCCCCEEEEEecCceeEEEEcCCCEEEEEEEeCCCCEECCCCEEEEe
Confidence 4799999999974 7899999999999999999999999999999999999999999999999999987
No 15
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=99.28 E-value=6.3e-12 Score=116.02 Aligned_cols=61 Identities=21% Similarity=0.241 Sum_probs=58.3
Q ss_pred CCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEecC
Q 024168 203 RAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPS 263 (271)
Q Consensus 203 ~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~ 263 (271)
...|+|++||.|++||+|+.||+||+.++|+||.+|+|.++++++|+.|..|++|+.|.+.
T Consensus 19 ~~~~~~~~g~~v~~~~~~~~~e~~k~~~~~~a~~~g~~~~~~~~~g~~v~~g~~l~~i~~~ 79 (371)
T PRK14875 19 VAGWLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEGETLPVGALLAVVADA 79 (371)
T ss_pred EEEEEcCCCCEeCCCCEEEEEEecceeEEEecCCCeEEEEEEcCCCCEeCCCCEEEEEecC
Confidence 3579999999999999999999999999999999999999999999999999999999864
No 16
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=99.27 E-value=1.2e-11 Score=125.31 Aligned_cols=70 Identities=31% Similarity=0.457 Sum_probs=66.8
Q ss_pred eEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168 183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILP 262 (271)
Q Consensus 183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~ 262 (271)
..|+||+.|+++. ++|++||.|++||+|+.||+||+.++|+||++|+|.++++++|+.|.+|++|++|+|
T Consensus 523 ~~V~Ap~~G~v~~----------~~V~~Gd~V~~Gq~L~~ieamKme~~V~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~~ 592 (592)
T PRK09282 523 GAVTSPMPGTVVK----------VKVKEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKEGDRVNPGDVLMEIEP 592 (592)
T ss_pred ceEeCCCcEEEEE----------EEeCCCCEECCCCEEEEEeccccceEEEcCCCeEEEEEEeCCCCEeCCCCEEEEecC
Confidence 5799999999974 689999999999999999999999999999999999999999999999999999975
No 17
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=99.26 E-value=2.1e-11 Score=90.23 Aligned_cols=56 Identities=30% Similarity=0.401 Sum_probs=54.0
Q ss_pred CCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEE
Q 024168 205 PPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVI 260 (271)
Q Consensus 205 ~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I 260 (271)
.|++++||.|++||.|+.+|+||+..+|+||++|+|+++++++|+.|..|++|++|
T Consensus 18 ~~~v~~G~~v~~g~~l~~ie~~k~~~~i~ap~~G~v~~~~~~~g~~v~~g~~l~~i 73 (73)
T cd06663 18 KWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGTKVEGDTPLVKI 73 (73)
T ss_pred EEEcCCcCEECCCCEEEEEEeCCeEEEEEcCCCEEEEEEEeCCCCEECCCCEEEEC
Confidence 37899999999999999999999999999999999999999999999999999975
No 18
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=99.25 E-value=1.8e-11 Score=132.55 Aligned_cols=73 Identities=33% Similarity=0.472 Sum_probs=68.7
Q ss_pred CCCceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEE
Q 024168 179 DEGLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLI 258 (271)
Q Consensus 179 ~~~~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~ 258 (271)
+.+...|.||+.|+++. |+|++||.|++||+|++||+|||.++|.||++|+|++|++++|+.|..||+|+
T Consensus 1129 ~~~~~~v~a~~~G~v~~----------~~v~~Gd~V~~Gd~l~~iEsmK~~~~v~ap~~G~v~~i~~~~G~~V~~G~~l~ 1198 (1201)
T TIGR02712 1129 PEGAEQVESEYAGNFWK----------VLVEVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQPGDMVDAGDIVA 1198 (1201)
T ss_pred CCCCcEEeCCceEEEEE----------EEeCCCCEECCCCEEEEEEecCeeEEEEcCCCEEEEEEEeCCCCEeCCCCEEE
Confidence 45567899999999984 89999999999999999999999999999999999999999999999999999
Q ss_pred EEe
Q 024168 259 VIL 261 (271)
Q Consensus 259 ~I~ 261 (271)
.|+
T Consensus 1199 ~i~ 1201 (1201)
T TIGR02712 1199 VLE 1201 (1201)
T ss_pred EeC
Confidence 874
No 19
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=99.24 E-value=1.6e-11 Score=124.36 Aligned_cols=65 Identities=35% Similarity=0.470 Sum_probs=62.2
Q ss_pred eEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeE
Q 024168 183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPL 257 (271)
Q Consensus 183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L 257 (271)
..|.|||+|+++. |+|++||.|++||+|++||+|||.++|.||.+|+|.+|++++|+.|..|++|
T Consensus 518 ~~v~ap~~G~v~~----------~~V~~Gd~V~~G~~l~~iEamKme~~i~ap~~G~V~~i~v~~Gd~V~~G~~l 582 (582)
T TIGR01108 518 TPVTAPIAGSIVK----------VKVSEGQTVAEGEVLLILEAMKMETEIKAAAAGTVREILVKVGDAVSVGQVL 582 (582)
T ss_pred CeEeCCccEEEEE----------EEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCCC
Confidence 4699999999974 8999999999999999999999999999999999999999999999999975
No 20
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=99.20 E-value=3.4e-11 Score=129.70 Aligned_cols=71 Identities=24% Similarity=0.339 Sum_probs=66.7
Q ss_pred CceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEE
Q 024168 181 GLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVI 260 (271)
Q Consensus 181 ~~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I 260 (271)
+...|.|||.|.++. |+|++||.|++||+|++||+|||.++|.||.+|+|.+|++++|+.|+.|++|++|
T Consensus 1073 ~~~~I~a~~~G~v~~----------~~v~~Gd~V~~Gd~L~~iEamKm~~~I~Ap~~G~V~~i~v~~G~~V~~g~~l~~i 1142 (1143)
T TIGR01235 1073 NPAHVGAPMPGVIIE----------VKVSSGQAVNKGDPLVVLEAMKMETAIQAPKDGTIKEVLVKAGEQIDAKDLLLVL 1142 (1143)
T ss_pred cCceeecCCCcEEEE----------EEeCCCCEeCCCCEEEEEEecceeEEEecCCCEEEEEEEeCCCCEECCCCEEEEe
Confidence 345799999999963 8899999999999999999999999999999999999999999999999999988
Q ss_pred e
Q 024168 261 L 261 (271)
Q Consensus 261 ~ 261 (271)
+
T Consensus 1143 ~ 1143 (1143)
T TIGR01235 1143 E 1143 (1143)
T ss_pred C
Confidence 4
No 21
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=99.20 E-value=2.3e-11 Score=120.09 Aligned_cols=77 Identities=26% Similarity=0.277 Sum_probs=67.0
Q ss_pred eEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168 183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILP 262 (271)
Q Consensus 183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~ 262 (271)
..|+-|..|.-... |-..+|+|++||.|++||+||+||+||+.++|+||++|+|.+|++++||.|..|++|+.|..
T Consensus 92 ~~i~mP~lg~~~~e----G~I~~w~v~~GD~V~~Gq~L~~VEtdK~~~eI~Ap~~G~v~~ilv~eGd~V~vG~~L~~I~~ 167 (463)
T PLN02226 92 VEAVVPHMGESITD----GTLATFLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLVKEGDTVEPGTKVAIISK 167 (463)
T ss_pred eEEecCCCCCCcce----EEEEEEEeCCCCEecCCCEEEEEEecceeeEEecCCCeEEEEEEeCCCCEecCCCEEEEecc
Confidence 57788887743221 23467999999999999999999999999999999999999999999999999999999975
Q ss_pred C
Q 024168 263 S 263 (271)
Q Consensus 263 ~ 263 (271)
.
T Consensus 168 ~ 168 (463)
T PLN02226 168 S 168 (463)
T ss_pred C
Confidence 3
No 22
>PRK12999 pyruvate carboxylase; Reviewed
Probab=99.17 E-value=6.4e-11 Score=127.77 Aligned_cols=71 Identities=30% Similarity=0.407 Sum_probs=66.9
Q ss_pred ceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEe
Q 024168 182 LVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVIL 261 (271)
Q Consensus 182 ~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~ 261 (271)
...|.|||.|++.. ++|++||.|++||+|++||+|||.++|+||++|+|.+|++++|+.|+.|+.|+.|+
T Consensus 1076 ~~~v~apm~G~v~~----------i~v~~Gd~V~~G~~L~~leamKme~~i~Ap~~G~V~~i~v~~g~~V~~g~~l~~i~ 1145 (1146)
T PRK12999 1076 PGHVGAPMPGSVVT----------VLVKEGDEVKAGDPLAVIEAMKMETTITAPVDGTVKRVLVKAGDQVEAGDLLVELE 1145 (1146)
T ss_pred CceEeCCceEEEEE----------EEcCCCCEECCCCEEEEEEccccceEEecCCCEEEEEEEeCCCCEECCCCEEEEEc
Confidence 35799999999964 78999999999999999999999999999999999999999999999999999986
Q ss_pred c
Q 024168 262 P 262 (271)
Q Consensus 262 ~ 262 (271)
+
T Consensus 1146 ~ 1146 (1146)
T PRK12999 1146 P 1146 (1146)
T ss_pred C
Confidence 4
No 23
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=99.17 E-value=3.8e-11 Score=117.31 Aligned_cols=78 Identities=26% Similarity=0.400 Sum_probs=68.4
Q ss_pred ceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEe
Q 024168 182 LVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVIL 261 (271)
Q Consensus 182 ~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~ 261 (271)
+..|+-|..|.-... |....|+|++||.|++||+||.||+||+.++|+||++|+|.+|++++|+.|..|++|+.|.
T Consensus 44 i~~i~~P~lg~~~~e----g~I~~w~v~~Gd~V~~Gd~L~~vEtdK~~~ei~Ap~~G~v~~i~v~~G~~V~~G~~L~~I~ 119 (418)
T PTZ00144 44 IKVIKVPTMGDSISE----GTVVEWKKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAEEGDTVEVGAPLSEID 119 (418)
T ss_pred ceEEecCCCCCCcce----EEEEEEEeCCCCEeCCCCEEEEEEEcceEEEEecCCCeEEEEEEeCCCCEecCCCEEEEEc
Confidence 357888888753332 2456899999999999999999999999999999999999999999999999999999997
Q ss_pred cC
Q 024168 262 PS 263 (271)
Q Consensus 262 ~~ 263 (271)
..
T Consensus 120 ~~ 121 (418)
T PTZ00144 120 TG 121 (418)
T ss_pred CC
Confidence 54
No 24
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=99.15 E-value=7e-11 Score=118.06 Aligned_cols=70 Identities=26% Similarity=0.317 Sum_probs=65.9
Q ss_pred eEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168 183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILP 262 (271)
Q Consensus 183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~ 262 (271)
..+++||.|++.. ..|++|+.|.+||+|+++|+|||.+.|+||.+|+|.++.++.|+.|..|++|+++++
T Consensus 576 ~~l~aPMpG~v~~----------v~V~~G~~V~~G~~lvvlEAMKME~~l~A~~dG~V~~v~v~~Gd~V~~g~vLve~~~ 645 (645)
T COG4770 576 GELLAPMPGTVVS----------VAVKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKLAVAEGDQVAVGTVLVEFEE 645 (645)
T ss_pred CceecCCCceEEE----------EEecCCCEecCCCeEEEeEehhcccceecCcCcEEEEEEecCCCccccCceEEEecC
Confidence 4699999999975 569999999999999999999999999999999999999999999999999999864
No 25
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=99.07 E-value=1.4e-10 Score=119.57 Aligned_cols=75 Identities=32% Similarity=0.427 Sum_probs=68.2
Q ss_pred cCCCCceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCe
Q 024168 177 AADEGLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDP 256 (271)
Q Consensus 177 a~~~~~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~ 256 (271)
++..|-..|-|||.|++.. .+|+.||.|++||+|.++|+|||...|.||++|+|.+++|.+||.|+.||.
T Consensus 1074 Ad~~Np~higApmpG~Vv~----------v~V~~G~~Vk~Gd~l~~ieAMKMEt~i~Ap~dG~i~~v~V~~gd~i~~gDL 1143 (1149)
T COG1038 1074 ADPGNPGHIGAPMPGVVVE----------VKVKKGDKVKKGDVLAVIEAMKMETTISAPFDGTVKEVLVKDGDQIDGGDL 1143 (1149)
T ss_pred cCCCCccccCCCCCCceEE----------EEEccCCeecCCCeeeehhhhhhceeeecCCCceEeEEEecCCCccccCce
Confidence 3444556899999998864 679999999999999999999999999999999999999999999999999
Q ss_pred EEEEe
Q 024168 257 LIVIL 261 (271)
Q Consensus 257 L~~I~ 261 (271)
|+.+.
T Consensus 1144 Li~~~ 1148 (1149)
T COG1038 1144 LVVVE 1148 (1149)
T ss_pred EEEcc
Confidence 99875
No 26
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=99.07 E-value=2e-10 Score=111.87 Aligned_cols=78 Identities=24% Similarity=0.285 Sum_probs=68.1
Q ss_pred eEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168 183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILP 262 (271)
Q Consensus 183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~ 262 (271)
..|+.|..|.-+.. |...+|++++||.|++||+|+.||++|...||.||++|+|.+|+++.|+.|..|++|++|..
T Consensus 3 ~ei~mP~lge~~~E----G~I~~W~~k~GD~V~~gd~L~eVeTDKa~~EV~ap~~G~l~~i~~~~G~~V~Vg~~I~~i~~ 78 (404)
T COG0508 3 IEIKMPDLGETMTE----GTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEGDTVPVGAVIARIEE 78 (404)
T ss_pred ceEecCCCCCccce----EEEEEEecCCCCeecCCCeeEEEEcCceeEEecCCCCeEEEEEeccCCCEEcCCCeEEEEec
Confidence 35777777753322 34578999999999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 024168 263 SF 264 (271)
Q Consensus 263 ~~ 264 (271)
..
T Consensus 79 ~~ 80 (404)
T COG0508 79 EG 80 (404)
T ss_pred CC
Confidence 53
No 27
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=99.03 E-value=6.8e-10 Score=108.20 Aligned_cols=61 Identities=26% Similarity=0.248 Sum_probs=58.0
Q ss_pred CCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEecCC
Q 024168 204 APPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPSF 264 (271)
Q Consensus 204 ~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~~ 264 (271)
..|+|++||.|++||+||.||+||+.++|+||++|+|.+|+++.|+.|..|++|++|....
T Consensus 20 ~~w~v~~Gd~V~~Gd~l~~vEtdK~~~ei~a~~~G~v~~i~v~~G~~V~~G~~l~~i~~~~ 80 (407)
T PRK05704 20 ATWHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEEGDTVTVGQVLGRIDEGA 80 (407)
T ss_pred EEEEeCCcCEeCCCCEEEEEEecCceeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecCC
Confidence 3599999999999999999999999999999999999999999999999999999998643
No 28
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=98.94 E-value=1.5e-09 Score=109.21 Aligned_cols=77 Identities=19% Similarity=0.216 Sum_probs=70.8
Q ss_pred ceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEe
Q 024168 182 LVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVIL 261 (271)
Q Consensus 182 ~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~ 261 (271)
...|+.|..|. ... |....|+|++||.|++||.|+.||+||+.++|+||++|+|.+|+++.|+.|..|++|+.|.
T Consensus 116 ~~~~~~P~~g~-~~e----g~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ei~a~~~G~v~~i~v~~G~~v~vG~~l~~i~ 190 (546)
T TIGR01348 116 VQEVTVPDIGD-IEK----VTVIEVLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKVKVGDSVPTGDLILTLS 190 (546)
T ss_pred ceEEeCCCCCC-cce----eEEeEEeeCCCCcccCCCeeEEEEecceeeEecCCCCcEEEEEecCCCCEecCCCEEEEEe
Confidence 36899999998 543 3578999999999999999999999999999999999999999999999999999999997
Q ss_pred cC
Q 024168 262 PS 263 (271)
Q Consensus 262 ~~ 263 (271)
..
T Consensus 191 ~~ 192 (546)
T TIGR01348 191 VA 192 (546)
T ss_pred cC
Confidence 53
No 29
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=98.93 E-value=1.7e-09 Score=110.60 Aligned_cols=76 Identities=18% Similarity=0.188 Sum_probs=68.5
Q ss_pred ceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEe
Q 024168 182 LVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVIL 261 (271)
Q Consensus 182 ~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~ 261 (271)
...|+.|..| .-. |-...|+|++||.|++||+||.||+||+.++|+||++|+|.+|++++|+.|..|++|+.|.
T Consensus 206 ~~~~~~p~lg-~~e-----g~v~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~ap~~G~l~~i~~~~G~~v~~G~~l~~i~ 279 (633)
T PRK11854 206 VKDVNVPDIG-GDE-----VEVTEVMVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGDKVKTGSLIMRFE 279 (633)
T ss_pred ceEEecCCCc-ccc-----eEEEEEEecCCCeecCCCceEEEEecceeeEeeCCCCeEEEEEecCCCCEecCCCEEEEEe
Confidence 3678999999 321 3457899999999999999999999999999999999999999999999999999999997
Q ss_pred cC
Q 024168 262 PS 263 (271)
Q Consensus 262 ~~ 263 (271)
..
T Consensus 280 ~~ 281 (633)
T PRK11854 280 VE 281 (633)
T ss_pred cC
Confidence 53
No 30
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=98.93 E-value=1.6e-09 Score=105.56 Aligned_cols=60 Identities=25% Similarity=0.260 Sum_probs=57.5
Q ss_pred CCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEecC
Q 024168 204 APPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPS 263 (271)
Q Consensus 204 ~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~ 263 (271)
..|+|++||.|++||+||.+|+||+.++|.|+++|+|.+|++++|+.|..|++|++|...
T Consensus 18 ~~w~v~~Gd~V~~g~~l~~vEtdK~~~ei~a~~~G~v~~i~~~eG~~v~vG~~l~~i~~~ 77 (403)
T TIGR01347 18 AEWHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKEGDTVESGQVLAILEEG 77 (403)
T ss_pred EEEEeCCcCEeCCCCEEEEEEEcceeeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecC
Confidence 359999999999999999999999999999999999999999999999999999999754
No 31
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=98.92 E-value=2.3e-09 Score=107.73 Aligned_cols=77 Identities=30% Similarity=0.302 Sum_probs=71.4
Q ss_pred ceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEe
Q 024168 182 LVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVIL 261 (271)
Q Consensus 182 ~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~ 261 (271)
...|+.|..|. +.. |....|++++||.|++||.|+.||+||+.++|+||++|+|.++++++|+.|..|++|+.|.
T Consensus 119 ~~~~~~P~~g~-~~e----g~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ev~Ap~~G~v~~i~~~~G~~v~~G~~l~~i~ 193 (547)
T PRK11855 119 VVEVKVPDIGE-ITE----VEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVGDKVSVGSLLVVIE 193 (547)
T ss_pred ceEEecCCCCC-cce----eEEeEEEeCCCCeecCCCeeEEEEecceeEEecCCCCeEEEEEecCCCCEecCCCEEEEEe
Confidence 46899999999 754 3678999999999999999999999999999999999999999999999999999999997
Q ss_pred cC
Q 024168 262 PS 263 (271)
Q Consensus 262 ~~ 263 (271)
..
T Consensus 194 ~~ 195 (547)
T PRK11855 194 VA 195 (547)
T ss_pred cC
Confidence 54
No 32
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=98.91 E-value=2e-09 Score=109.96 Aligned_cols=74 Identities=22% Similarity=0.238 Sum_probs=65.9
Q ss_pred EEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEecC
Q 024168 184 ILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPS 263 (271)
Q Consensus 184 ~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~ 263 (271)
.|+.|..| +. . |....|+|++||.|++||+|++||+||+.++|+||++|+|.+|++++|+.|..|++|+.|+..
T Consensus 4 ~i~~P~lg-~~-e----g~i~~~~v~~Gd~V~~g~~l~~vEt~K~~~~v~a~~~G~v~~i~~~~g~~V~~G~~l~~i~~~ 77 (633)
T PRK11854 4 EIKVPDIG-AD-E----VEVTEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVKVGDKVETGALIMIFESA 77 (633)
T ss_pred eEeeCCCC-Cc-e----EEEEEEEeCCCCEECCCCEEEEEEeCCeeEEEeCCCCEEEEEEEeCCCCEEeCCCEEEEEecc
Confidence 46777777 32 1 245689999999999999999999999999999999999999999999999999999999875
No 33
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=98.88 E-value=4.4e-09 Score=106.86 Aligned_cols=77 Identities=17% Similarity=0.212 Sum_probs=66.6
Q ss_pred eEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168 183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILP 262 (271)
Q Consensus 183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~ 262 (271)
..|+-|..|.-... +....|+|++||.|++||.||.||+||+.++|.|+++|+|.+|+++.|+.|..|++|++|..
T Consensus 136 ~~~~~P~lg~~~~e----g~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~s~~~G~v~~i~v~~G~~v~vG~~l~~i~~ 211 (590)
T TIGR02927 136 TDIEMPELGESVTE----GTITQWLKAVGDKIEVDEPILEVSTDKVDTEIPSPVAGTILEILAEEDDTVDVGAEIAKIGD 211 (590)
T ss_pred eEEEcCCCCCCcce----EEEEEEEeCCCCEecCCCEeEEEEecceeeEEcCCCCeEEEEEecCCCCEecCCCEEEEEec
Confidence 56888877742111 23457999999999999999999999999999999999999999999999999999999975
Q ss_pred C
Q 024168 263 S 263 (271)
Q Consensus 263 ~ 263 (271)
.
T Consensus 212 ~ 212 (590)
T TIGR02927 212 A 212 (590)
T ss_pred C
Confidence 3
No 34
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=98.85 E-value=2.1e-09 Score=102.76 Aligned_cols=60 Identities=28% Similarity=0.320 Sum_probs=58.2
Q ss_pred CCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168 203 RAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILP 262 (271)
Q Consensus 203 ~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~ 262 (271)
...|..++||.|++++.||.||++|+..+|.||.+|+|+++||++||.|+.||.|+.|.+
T Consensus 89 l~~~lK~~Gd~v~~DE~va~IETDK~tv~V~sP~sGvi~e~lvk~gdtV~~g~~la~i~~ 148 (457)
T KOG0559|consen 89 LAQWLKKVGDRVNEDEAVAEIETDKTTVEVPSPASGVITELLVKDGDTVTPGQKLAKISP 148 (457)
T ss_pred HHHHhhCcccccccchhheeeeccceeeeccCCCcceeeEEecCCCCcccCCceeEEecC
Confidence 356999999999999999999999999999999999999999999999999999999998
No 35
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=98.72 E-value=2.8e-08 Score=97.22 Aligned_cols=59 Identities=31% Similarity=0.344 Sum_probs=56.6
Q ss_pred CCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEecC
Q 024168 205 PPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPS 263 (271)
Q Consensus 205 ~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~ 263 (271)
.|+|++||.|++||+|+.+|+||+.+++.|+.+|+|.+++++.|+.|..|++|++|...
T Consensus 17 ~w~v~~Gd~V~~g~~l~~vEtdK~~~ev~a~~~G~v~~i~v~~G~~v~vG~~l~~i~~~ 75 (416)
T PLN02528 17 RWFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPGDIVKVGETLLKIMVE 75 (416)
T ss_pred EEEeCCCCEECCCCEEEEEEeCceeEEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecc
Confidence 59999999999999999999999999999999999999999999999999999999643
No 36
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=98.71 E-value=8.2e-08 Score=67.54 Aligned_cols=56 Identities=34% Similarity=0.475 Sum_probs=53.6
Q ss_pred CCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEE
Q 024168 205 PPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVI 260 (271)
Q Consensus 205 ~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I 260 (271)
.|++..|+.|..|+.++.++++++..++.++.+|+|.+..+.+|+.+..|++|++|
T Consensus 19 ~~~~~~g~~v~~~~~l~~~~~~~~~~~i~a~~~g~v~~~~~~~g~~v~~g~~l~~~ 74 (74)
T cd06849 19 EWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEGDTVPVGQVIAVI 74 (74)
T ss_pred EEEECCCCEEcCCCEEEEEEeCCeEEEEECCCCEEEEEEeeCCcCEeCCCCEEEEC
Confidence 47899999999999999999999999999999999999999999999999999875
No 37
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=98.70 E-value=2.2e-08 Score=100.77 Aligned_cols=73 Identities=32% Similarity=0.298 Sum_probs=63.9
Q ss_pred EeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168 185 LESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILP 262 (271)
Q Consensus 185 V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~ 262 (271)
|+.|..|. ... |....|+|++||.|++||+||.||+||+..+|.|+++|+|.+++++.|+.|..|++|+.|.+
T Consensus 5 i~~p~~g~-~~~----g~i~~~~v~~Gd~V~~g~~l~~iEt~K~~~~I~A~~~G~I~~i~v~~Gd~V~~G~~L~~i~~ 77 (547)
T PRK11855 5 FKVPDIGE-VVE----VEVIEWLVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIKVKVGDTVSVGGLLAVIEA 77 (547)
T ss_pred eecCCcCC-Cce----EEEEEEEcCCCCEeCCCCEEEEEEecCeeEEEecCCCeEEEEEEeCCCCEecCCceeeEecc
Confidence 55566665 322 24467999999999999999999999999999999999999999999999999999999974
No 38
>PRK01202 glycine cleavage system protein H; Provisional
Probab=98.70 E-value=3.5e-08 Score=82.10 Aligned_cols=57 Identities=25% Similarity=0.437 Sum_probs=53.5
Q ss_pred CCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEE---ecCCCCccc---CCC-eEEEEecCCC
Q 024168 209 KEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKI---LRKDGDPIG---YGD-PLIVILPSFP 265 (271)
Q Consensus 209 ~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~I---lv~~Gd~V~---~Gq-~L~~I~~~~~ 265 (271)
++|+.|++||+++.||++|...+|.||++|+|+++ +.++.+.|. ||+ +|++|++..+
T Consensus 46 ~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~p~~ln~~p~~~gWl~~v~~~~~ 109 (127)
T PRK01202 46 EVGDEVKAGETFGVVESVKAASDIYAPVSGEVVEVNEALEDSPELVNEDPYGEGWLFKIKPSDE 109 (127)
T ss_pred CCCCEecCCCEEEEEEEcceeeeeecCCCeEEEEEhHHhhhCcHhhcCCCCCCceEEEEEeCCH
Confidence 58999999999999999999999999999999999 899999999 987 9999998654
No 39
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=98.67 E-value=5.2e-08 Score=98.25 Aligned_cols=59 Identities=24% Similarity=0.253 Sum_probs=56.9
Q ss_pred CCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168 204 APPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILP 262 (271)
Q Consensus 204 ~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~ 262 (271)
..|+|++||.|++||+|+.||+||+.++|.|+++|+|.+++++.|+.|..|++|++|..
T Consensus 17 ~~~~v~~Gd~V~~G~~l~~vet~K~~~~I~a~~~G~V~~i~~~~Gd~V~~G~~La~i~~ 75 (546)
T TIGR01348 17 IEVLVKPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVKVGDTLPVGGVIATLEV 75 (546)
T ss_pred EEEEeCCCCEEcCCCEEEEEEcccceeEEEcCCCEEEEEEEecCCCEEeccceEEEEec
Confidence 35999999999999999999999999999999999999999999999999999999975
No 40
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=98.64 E-value=3.5e-08 Score=100.72 Aligned_cols=71 Identities=25% Similarity=0.287 Sum_probs=65.9
Q ss_pred ceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEe
Q 024168 182 LVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVIL 261 (271)
Q Consensus 182 ~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~ 261 (271)
-..|-|||.|++.. ..|++|+.|++||.||.+.+|||.+-|.||.+|+|+++.+.+|+.|+.|+.++.++
T Consensus 1106 ~g~igAPMpG~vie----------ikvk~G~kV~Kgqpl~VLSAMKMEmVv~sP~~G~vk~v~v~~g~~~~g~DL~~~~E 1175 (1176)
T KOG0369|consen 1106 KGHIGAPMPGTVIE----------IKVKEGAKVKKGQPLAVLSAMKMEMVISSPHAGTVKKVHVVQGTKVEGGDLIVELE 1175 (1176)
T ss_pred cccccCCCCCceEE----------EEEecCceecCCCceEeeecceeeeeecCCCCceeeEEEecCCCcccccceEEEcc
Confidence 35799999999864 56999999999999999999999999999999999999999999999999999886
Q ss_pred c
Q 024168 262 P 262 (271)
Q Consensus 262 ~ 262 (271)
+
T Consensus 1176 ~ 1176 (1176)
T KOG0369|consen 1176 H 1176 (1176)
T ss_pred C
Confidence 4
No 41
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=98.57 E-value=1.1e-07 Score=95.84 Aligned_cols=76 Identities=25% Similarity=0.335 Sum_probs=64.6
Q ss_pred eEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCC-cccCCCeEEEEe
Q 024168 183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGD-PIGYGDPLIVIL 261 (271)
Q Consensus 183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd-~V~~Gq~L~~I~ 261 (271)
..|+-|..|.-... +-...|++++||.|++||+||.||++|..++|.|+.+|+|.+|++++|+ .|..|++|+.+.
T Consensus 113 ~ei~mP~lg~~m~e----g~I~~W~vkeGD~V~~g~~l~eVETDKa~~evea~~~G~l~ki~~~eG~~~v~vG~~ia~i~ 188 (539)
T PLN02744 113 QEIGMPSLSPTMTE----GNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGAKEIKVGEVIAITV 188 (539)
T ss_pred ceEeCCCCCCCcce----eEEEEEEecCCCEecCCCeeEEEeeccceeEecCCCCcEEEEEEecCCCcccCCCCEEEEEc
Confidence 45777777742221 1346799999999999999999999999999999999999999999996 899999999885
Q ss_pred c
Q 024168 262 P 262 (271)
Q Consensus 262 ~ 262 (271)
.
T Consensus 189 ~ 189 (539)
T PLN02744 189 E 189 (539)
T ss_pred c
Confidence 4
No 42
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=98.57 E-value=1.4e-07 Score=91.61 Aligned_cols=60 Identities=33% Similarity=0.405 Sum_probs=57.3
Q ss_pred CCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEecC
Q 024168 204 APPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPS 263 (271)
Q Consensus 204 ~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~ 263 (271)
..|++++||.|++||+|+.||++|+..+|.||.+|+|.+++++.|+.|..|++|+.|...
T Consensus 20 ~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~Ap~~G~i~~~~v~~G~~v~~G~~l~~i~~~ 79 (411)
T PRK11856 20 VEWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGDVVPVGSVIAVIEEE 79 (411)
T ss_pred EEEEeCCcCEeCCCCEEEEEEecceEEEEeCCCCeEEEEEecCCCCEeCCCCEEEEEecC
Confidence 469999999999999999999999999999999999999999999999999999999753
No 43
>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial. The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.
Probab=98.56 E-value=1.9e-07 Score=76.13 Aligned_cols=57 Identities=28% Similarity=0.444 Sum_probs=50.9
Q ss_pred CCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEE---ecCCCCccc---CCC-eEEEEecCCC
Q 024168 209 KEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKI---LRKDGDPIG---YGD-PLIVILPSFP 265 (271)
Q Consensus 209 ~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~I---lv~~Gd~V~---~Gq-~L~~I~~~~~ 265 (271)
++|+.|++||.++.||++|...+|.||++|+|+++ +.++-+.+. ||+ +|++|++..+
T Consensus 39 ~~G~~V~~g~~i~~IEs~K~~~ei~sP~sG~Vv~vN~~l~~~P~lln~~py~~gWl~~v~~~~~ 102 (110)
T TIGR03077 39 SVGSSCKEGEVLVILESSKSAIEVLSPVSGEVIEVNIALEDDTQPINHSPESEGWFVVVQLDED 102 (110)
T ss_pred CCCCEEcCCCEEEEEEeccEEEEEeCCCCEEEEEEHHHhhhChHhhcCCCCCCceEEEEEECCH
Confidence 77999999999999999999999999999999999 677777764 776 9999997654
No 44
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=98.53 E-value=7e-08 Score=95.99 Aligned_cols=69 Identities=23% Similarity=0.316 Sum_probs=64.9
Q ss_pred eEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEe
Q 024168 183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVIL 261 (271)
Q Consensus 183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~ 261 (271)
..+.+||.|.+. +.+|+.||.|++||.++.+++|||.+-++||.+|+|..+.++.|+.|.-|.+|++++
T Consensus 602 ~v~~aPMpG~Ie----------kv~Vkpgd~V~~Gq~l~Vl~AMKMe~~~~apk~gtvk~v~~~aG~~v~~g~vlv~~~ 670 (670)
T KOG0238|consen 602 GVIVAPMPGIIE----------KVLVKPGDKVKEGQELVVLIAMKMEHSLKAPKDGTVKDVKYKAGATVGDGAVLVEFE 670 (670)
T ss_pred CceecCCCCeee----------eeeccchhhhcccCceEEEEecchhhhhhCCCCCceeeEeeecCcccCCCceEEEeC
Confidence 468999999874 589999999999999999999999999999999999999999999999999999863
No 45
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=98.52 E-value=1.6e-07 Score=92.30 Aligned_cols=59 Identities=27% Similarity=0.334 Sum_probs=56.6
Q ss_pred CCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCc-ccCCCeEEEEec
Q 024168 204 APPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDP-IGYGDPLIVILP 262 (271)
Q Consensus 204 ~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~-V~~Gq~L~~I~~ 262 (271)
..|++++||.|++||+||.||++|+.++|.|+.+|+|.+|+++.|+. |..|++|+.|..
T Consensus 17 ~~w~v~~Gd~V~~g~~l~~vetdKa~~ei~a~~~G~l~~i~v~~g~~~v~vG~~l~~i~~ 76 (435)
T TIGR01349 17 AKWLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEGTKDVPVNKPIAVLVE 76 (435)
T ss_pred EEEEeCCCCccCCCCEEEEEEecceeeEEcCCCCEEEEEEEECCCCEEecCCCEEEEEec
Confidence 46999999999999999999999999999999999999999999999 999999999964
No 46
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=98.48 E-value=2.2e-07 Score=92.26 Aligned_cols=62 Identities=27% Similarity=0.302 Sum_probs=57.7
Q ss_pred CCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCC-cccCCCeEEEEecCC
Q 024168 203 RAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGD-PIGYGDPLIVILPSF 264 (271)
Q Consensus 203 ~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd-~V~~Gq~L~~I~~~~ 264 (271)
...|++++||.|++||+|+.||++|+..+|.|+.+|+|.+|+++.|+ .|..|++|+.|..+.
T Consensus 19 i~~w~v~~Gd~V~~gd~l~~iETdKa~~ev~A~~~G~v~~i~v~~G~~~V~vG~~i~~i~~~~ 81 (464)
T PRK11892 19 LAKWLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGTEGVKVNTPIAVLLEEG 81 (464)
T ss_pred EEEEEecCCCEecCCCeEEEEEecceeeeecCCCceEEEEEEecCCCcEeCCCCEEEEEccCC
Confidence 35799999999999999999999999999999999999999999995 799999999997543
No 47
>PRK00624 glycine cleavage system protein H; Provisional
Probab=98.48 E-value=4.2e-07 Score=74.62 Aligned_cols=57 Identities=28% Similarity=0.402 Sum_probs=51.6
Q ss_pred CCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEE---ecCCCCccc---CCC-eEEEEecCCC
Q 024168 209 KEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKI---LRKDGDPIG---YGD-PLIVILPSFP 265 (271)
Q Consensus 209 ~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~I---lv~~Gd~V~---~Gq-~L~~I~~~~~ 265 (271)
++|+.|++||.||.||++|...+|.||++|+|+++ +.++-+.+. ||+ +|++|++..+
T Consensus 41 ~~G~~V~~g~~i~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~P~lln~dpy~~gWl~~v~~~~~ 104 (114)
T PRK00624 41 SVGSFCKEGEVLVILESSKSAIEVLSPVSGEVIEVNTALEDDIQPINNAPESEGWFVVVQLDED 104 (114)
T ss_pred CCCCEEeCCCEEEEEEeccEEEEEeCCCCEEEEEEHHHhhhChHhhcCCCCCCceEEEEEECCh
Confidence 77999999999999999999999999999999999 777777765 777 9999998664
No 48
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=98.47 E-value=2e-07 Score=94.89 Aligned_cols=75 Identities=21% Similarity=0.221 Sum_probs=63.3
Q ss_pred EEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168 184 ILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILP 262 (271)
Q Consensus 184 ~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~ 262 (271)
.|+.|..|.-... +....|+|++||.|+.||+||.||+||+.++|.|+.+|+|.+|+++.|+.|..|+.|+.|..
T Consensus 4 ~i~~P~lg~~~~e----g~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~a~~~G~v~~i~v~~Gd~v~vG~~ia~i~~ 78 (590)
T TIGR02927 4 SVEMPALGESVTE----GTITQWLKAEGDTVELDEPLLEVSTDKVDTEIPSPAAGVILEIKAEEDDTVDIGGEIAIIGE 78 (590)
T ss_pred eEECCCCCCCccE----EEEEEEEECCCCEEeCCCeEEEEEecceEEEecCCCCEEEEEEeecCCCEEeeeeeEEEEee
Confidence 3556666631111 12357999999999999999999999999999999999999999999999999999998864
No 49
>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]
Probab=98.33 E-value=6.1e-07 Score=88.27 Aligned_cols=67 Identities=24% Similarity=0.328 Sum_probs=63.2
Q ss_pred CCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCC-CcccCCCeEEEEecCCCCCCC
Q 024168 203 RAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDG-DPIGYGDPLIVILPSFPGIKL 269 (271)
Q Consensus 203 ~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~G-d~V~~Gq~L~~I~~~~~~~~~ 269 (271)
...|..++||.+.+||+||.||++|..+++++..+|.+.+||++.| .-|..|.+|+.|-+...+|+.
T Consensus 55 IvsW~kKeGdkls~GDvl~EVETDKAtmd~E~~ddGyLAKILi~EGskdvpVGk~Iaiive~e~di~~ 122 (470)
T KOG0557|consen 55 IVSWKKKEGDKLSAGDVLLEVETDKATMDVEAQDDGYLAKILIEEGSKDVPVGKPIAIIVEDEDDIAA 122 (470)
T ss_pred eeeEeeccCCccCCCceEEEEecccceeeeeeccCCeeeeeeeccCcccccCCCceEEEecccccHHH
Confidence 3569999999999999999999999999999999999999999999 889999999999999988874
No 50
>TIGR00527 gcvH glycine cleavage system H protein. The genome of Aquifex aeolicus contains one protein scoring above the trusted cutoff and clustering with other bacterial H proteins, and four more proteins clustering together and scoring below the trusted cutoff; it seems doubtful that all of these homologs are authentic H protein. The Chlamydial homolog of H protein is nearly as divergent as the Aquifex outgroup, is not accompanied by P and T proteins, is not included in the seed alignment, and consequently also scores below the trusted cutoff.
Probab=98.31 E-value=1.4e-06 Score=72.48 Aligned_cols=64 Identities=17% Similarity=0.177 Sum_probs=51.0
Q ss_pred CCCCCcc---CCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEe---cCCCCccc---CCC-eEEEEecCCC
Q 024168 202 KRAPPSC---KEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKIL---RKDGDPIG---YGD-PLIVILPSFP 265 (271)
Q Consensus 202 P~~~~~V---~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Il---v~~Gd~V~---~Gq-~L~~I~~~~~ 265 (271)
.+.-.|| ++|+.|++||++|.||+||+..+|.||++|+|+++. .++-+.+. |++ +|++|++..+
T Consensus 35 lG~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~P~lln~~py~~gWl~~i~~~~~ 108 (127)
T TIGR00527 35 LGDIVFVELPEVGAEVSAGESCGSVESVKAASDIYAPVSGTVVEVNDALEDSPELVNEDPYGGGWLIKVKLSDE 108 (127)
T ss_pred CCCCceeecCCCCCEecCCCEEEEEEEeeeeeeeecCCcEEEEEehHhhhhChHHHhCCCccCcEEEEEecCCH
Confidence 3444556 489999999999999999999999999999999994 33333433 555 9999998654
No 51
>PRK13380 glycine cleavage system protein H; Provisional
Probab=98.18 E-value=3.7e-06 Score=71.59 Aligned_cols=57 Identities=19% Similarity=0.371 Sum_probs=48.1
Q ss_pred CCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecC---CCCccc---CCC-eEEEEecCCC
Q 024168 209 KEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRK---DGDPIG---YGD-PLIVILPSFP 265 (271)
Q Consensus 209 ~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~---~Gd~V~---~Gq-~L~~I~~~~~ 265 (271)
++|+.|++||.++.||+||+..+|.||++|+|+++..+ +-+.+. ||+ +|++|++.++
T Consensus 53 ~~G~~V~~Gd~~~~IEs~K~~~~v~sPvsG~Vv~vN~~l~~~P~lln~dpy~~gWl~~v~~~d~ 116 (144)
T PRK13380 53 ELGKKVEKGKPVATLESGKWAGPVPAPLTGEVVEVNEALEDSPELVNEDPYGEGWFFRFKPANP 116 (144)
T ss_pred CCCCEeeCCCeEEEEEEcceEeeeecCcCEEEEEEHHhhhhChHHhcCCCCCCCeEEEEEECCH
Confidence 58999999999999999999999999999999999644 333333 665 9999998764
No 52
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=98.08 E-value=2.1e-05 Score=76.56 Aligned_cols=74 Identities=14% Similarity=0.159 Sum_probs=62.2
Q ss_pred CceEEeCCcCeEEEecccccCCCCCCc-cCCCCeEecCCeEEEEEec---------------------------------
Q 024168 181 GLVILESPKVGYFRRSRTIKGKRAPPS-CKEKQTVREGQVLCYIEQL--------------------------------- 226 (271)
Q Consensus 181 ~~~~V~sP~vG~f~~~~s~~~P~~~~~-V~~Gd~V~~Gq~l~~IEam--------------------------------- 226 (271)
....|.++..|.+.+ .+ +++||.|++||+|+.|++-
T Consensus 122 ~~~~v~arv~G~V~~----------l~~~~~Gd~VkkGq~La~l~spel~~aq~e~~~~~~~~~~~~~~~~~~~rl~~~~ 191 (409)
T PRK09783 122 QYAIVQARAAGFIDK----------VYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAG 191 (409)
T ss_pred ceEEEeCCcCEEEEE----------EEecCCCCEECCCCEEEEEeCHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHcC
Confidence 346899999998854 45 8999999999999999821
Q ss_pred ---------------CeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEecCC
Q 024168 227 ---------------GGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPSF 264 (271)
Q Consensus 227 ---------------K~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~~ 264 (271)
.....|+||++|+|.+..++.|+.|..|++||+|...+
T Consensus 192 i~~~~i~~l~~~~~~~~~~~I~AP~dGvV~~~~v~~G~~V~~g~~L~~I~d~~ 244 (409)
T PRK09783 192 MPEADIRRLIATRKIQTRFTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQGMD 244 (409)
T ss_pred CCHHHHHHHHHcCCCCCcEEEECCCCeEEEEEECCCCCEECCCCeEEEEEcCC
Confidence 11247999999999999999999999999999997544
No 53
>cd06848 GCS_H Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.
Probab=98.07 E-value=7.3e-06 Score=64.55 Aligned_cols=52 Identities=17% Similarity=0.178 Sum_probs=44.0
Q ss_pred cCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCC
Q 024168 189 KVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGD 249 (271)
Q Consensus 189 ~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd 249 (271)
+.|.++.- ++.++|+.|++||.++.||++|...+|.||++|+|+++..+-++
T Consensus 27 ~lG~i~~i---------~~~~~G~~v~~g~~l~~iEs~k~~~~i~sP~~G~v~~~n~~l~~ 78 (96)
T cd06848 27 LLGDIVFV---------ELPEVGTEVKKGDPFGSVESVKAASDLYSPVSGEVVEVNEALLD 78 (96)
T ss_pred hCCCEEEE---------EecCCCCEEeCCCEEEEEEEccEEEEEeCCCCEEEEEEhhhhhc
Confidence 56766542 46778999999999999999999999999999999999755443
No 54
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=98.01 E-value=1.8e-05 Score=73.52 Aligned_cols=36 Identities=22% Similarity=0.425 Sum_probs=32.7
Q ss_pred eeeecCCCeEEEEEecCCCCcccCCCeEEEEecCCC
Q 024168 230 IPIESDIAGEVIKILRKDGDPIGYGDPLIVILPSFP 265 (271)
Q Consensus 230 ~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~~~ 265 (271)
..|+||++|+|..+.++.|+.|..|++|+.|.+...
T Consensus 205 ~~I~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~~~ 240 (334)
T TIGR00998 205 TVIRAPFDGYVARRFVQVGQVVSPGQPLMAVVPAEQ 240 (334)
T ss_pred cEEEcCCCcEEEEEecCCCCEeCCCCeeEEEEcCCc
Confidence 369999999999999999999999999999987543
No 55
>COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=97.94 E-value=1.7e-05 Score=66.60 Aligned_cols=58 Identities=22% Similarity=0.450 Sum_probs=50.8
Q ss_pred cCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEE---ecCCCCccc---CCC-eEEEEecCCC
Q 024168 208 CKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKI---LRKDGDPIG---YGD-PLIVILPSFP 265 (271)
Q Consensus 208 V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~I---lv~~Gd~V~---~Gq-~L~~I~~~~~ 265 (271)
-++|+.|++|+.++.||+.|.-.+|+||++|+|+++ +.++-+.|+ ||. +||.|++.++
T Consensus 47 pe~G~~v~~g~~~~~vESvKaasdvyaPvsGeVvevN~~l~~~PeliN~dPyg~gWi~klk~~d~ 111 (131)
T COG0509 47 PEVGAEVKAGESLAVVESVKAASDVYAPVSGEVVEVNEALVDSPELINSDPYGEGWIVKLKPADP 111 (131)
T ss_pred CCCCCeecCCCeEEEEEeeeeeccccCCCceeEEEechhhhcChhhhccCCCCCceEEEEeeCCh
Confidence 378999999999999999999999999999999999 455555665 886 9999999875
No 56
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=97.92 E-value=2.6e-05 Score=71.26 Aligned_cols=73 Identities=23% Similarity=0.229 Sum_probs=62.0
Q ss_pred ceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCe---------------------------------
Q 024168 182 LVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGG--------------------------------- 228 (271)
Q Consensus 182 ~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~--------------------------------- 228 (271)
...|.+|..|.+. ..+|++||.|++||+|+.|+.-..
T Consensus 26 ~~~v~a~~~G~V~----------~i~v~~G~~V~kG~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~ 95 (322)
T TIGR01730 26 EADLAAEVAGKIT----------KISVREGQKVKKGQVLARLDDDDYQLALQAALAQLAAAEAQLELAQRSFERAERLVK 95 (322)
T ss_pred EEEEEccccEEEE----------EEEcCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3679999999985 367999999999999999974211
Q ss_pred --------------------------------------eeeeecCCCeEEEEEecCCCCcccCCCeEEEEecCC
Q 024168 229 --------------------------------------EIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPSF 264 (271)
Q Consensus 229 --------------------------------------~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~~ 264 (271)
...|+||++|+|..+.++.|+.|..|++|+.|....
T Consensus 96 ~~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~~ 169 (322)
T TIGR01730 96 RNAVSQADLDDAKAAVEAAQADLEAAKASLASAQLNLRYTEIRAPFDGTIGRRLVEVGAYVTAGQTLATIVDLD 169 (322)
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCEEECCCCcEEEEEEcCCCceeCCCCcEEEEEcCC
Confidence 235999999999999999999999999999997544
No 57
>KOG0558 consensus Dihydrolipoamide transacylase (alpha-keto acid dehydrogenase E2 subunit) [Energy production and conversion]
Probab=97.90 E-value=5.7e-06 Score=79.41 Aligned_cols=62 Identities=26% Similarity=0.257 Sum_probs=58.7
Q ss_pred CCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEecCC
Q 024168 203 RAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPSF 264 (271)
Q Consensus 203 ~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~~ 264 (271)
..+|||++||.|++=|.||.++++|....|.+-++|.|.+|.-+.+|....|++|+.++.+.
T Consensus 81 vkeWfVKEGDtVeqFd~lCEVQSDKAsvtItsRydG~v~ki~h~~ddia~VGk~Lvd~eve~ 142 (474)
T KOG0558|consen 81 VKEWFVKEGDTVEQFDPLCEVQSDKASVTITSRYDGKVKKIYHSPDDIAKVGKPLVDLEVED 142 (474)
T ss_pred eeeehhhcCCcHHHhcchhhcccccceEEEEeeecceEEEEeeCchhhhHhCcceeeeeecc
Confidence 46899999999999999999999999999999999999999999999999999999987543
No 58
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=97.85 E-value=5.1e-05 Score=71.64 Aligned_cols=34 Identities=12% Similarity=0.255 Sum_probs=31.9
Q ss_pred eeecCCCeEEEEEecCCCCcccCCCeEEEEecCC
Q 024168 231 PIESDIAGEVIKILRKDGDPIGYGDPLIVILPSF 264 (271)
Q Consensus 231 ~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~~ 264 (271)
.|+||++|+|.++.++.|+.|..|++|+.|.+.+
T Consensus 210 ~I~AP~dG~V~~~~~~~G~~V~~g~~l~~I~~~~ 243 (346)
T PRK10476 210 TVRAPFDGRVVGLKVSVGEFAAPMQPIFTLIDTD 243 (346)
T ss_pred EEECCCCcEEEeeecCCCCCcCCCCeEEEEecCC
Confidence 6899999999999999999999999999998764
No 59
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=97.81 E-value=9.3e-05 Score=68.52 Aligned_cols=67 Identities=18% Similarity=0.276 Sum_probs=59.1
Q ss_pred ceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEe
Q 024168 182 LVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVIL 261 (271)
Q Consensus 182 ~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~ 261 (271)
...|+||..|.|+. +++.||.|++||+|++|.. .+|+||.+|+|.-+ +.||-.|..|.-|..|-
T Consensus 164 Er~IrAp~~Gi~~~-----------~~~IGd~V~KGqvLa~I~~----~~V~APidGIVrGl-irdG~~V~~G~Ki~dID 227 (256)
T TIGR03309 164 ERVLRAPADGIVTP-----------TKAIGDSVKKGDVIATVGD----VPVVAPIDGLLRGL-IHEGLTVTEGLKIGDVD 227 (256)
T ss_pred eEEEECCCCeEEee-----------ccCCCCEEeCCCEEEEEcC----EEEEccCCeEEEEE-ecCCCCcCCCCEEEEEC
Confidence 36899999999963 5899999999999999975 79999999988765 58999999999999998
Q ss_pred cCC
Q 024168 262 PSF 264 (271)
Q Consensus 262 ~~~ 264 (271)
|..
T Consensus 228 PR~ 230 (256)
T TIGR03309 228 PRG 230 (256)
T ss_pred CCC
Confidence 753
No 60
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=97.73 E-value=9.6e-05 Score=69.38 Aligned_cols=72 Identities=22% Similarity=0.292 Sum_probs=61.4
Q ss_pred ceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCe---------------------------------
Q 024168 182 LVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGG--------------------------------- 228 (271)
Q Consensus 182 ~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~--------------------------------- 228 (271)
...|.++..|.+. ..+|++||.|++||+|+.|+.-..
T Consensus 47 ~v~i~~~v~G~V~----------~v~V~~Gd~VkkGqvLa~Ld~~~~~~~l~~a~a~l~~~~a~~~~~~~~~~r~~~L~~ 116 (310)
T PRK10559 47 VVAIAPDVSGLIT----------QVNVHDNQLVKKGQVLFTIDQPRYQKALAEAEADVAYYQVLAQEKRREAGRRNRLGV 116 (310)
T ss_pred EEEEccCCceEEE----------EEEeCCcCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4679999999885 367999999999999999985210
Q ss_pred -------------------------------------eeeeecCCCeEEEEEecCCCCcccCCCeEEEEecC
Q 024168 229 -------------------------------------EIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPS 263 (271)
Q Consensus 229 -------------------------------------~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~ 263 (271)
...|+||++|+|.++.++.|+.|..|++|+.|-..
T Consensus 117 ~aiS~~~~d~a~~~~~~a~a~l~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~~~~G~~V~~g~~l~~Iv~~ 188 (310)
T PRK10559 117 QAMSREEIDQANNVLQTVLHQLAKAQATRDLAKLDLERTVIRAPADGWVTNLNVYTGEFITRGSTAVALVKQ 188 (310)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEECCCCeEEEeEecCCCCEecCCCeeEEEEeC
Confidence 23699999999999999999999999999988654
No 61
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=97.69 E-value=0.00012 Score=70.88 Aligned_cols=34 Identities=26% Similarity=0.377 Sum_probs=31.9
Q ss_pred eeecCCCeEEEEEecCCCCcccCCCeEEEEecCC
Q 024168 231 PIESDIAGEVIKILRKDGDPIGYGDPLIVILPSF 264 (271)
Q Consensus 231 ~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~~ 264 (271)
.|+||++|+|..+.++.|+.|..|++||.|.+..
T Consensus 217 ~I~AP~dG~V~~~~v~~G~~V~~g~pl~~Iv~~~ 250 (390)
T PRK15136 217 KIVSPMTGYVSRRSVQVGAQISPTTPLMAVVPAT 250 (390)
T ss_pred EEECCCCeEEEEEecCCCCEeCCCCeEEEEEeCC
Confidence 6999999999999999999999999999998754
No 62
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=97.68 E-value=0.00012 Score=70.14 Aligned_cols=72 Identities=21% Similarity=0.292 Sum_probs=60.0
Q ss_pred ceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCe---------------------------------
Q 024168 182 LVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGG--------------------------------- 228 (271)
Q Consensus 182 ~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~--------------------------------- 228 (271)
...|.+++.|.+.. .+|++||.|++||+|+.|+.-..
T Consensus 63 ~~~l~~~v~G~V~~----------v~v~~Gd~VkkGq~La~ld~~~~~~~~~~a~a~l~~a~a~l~~a~~~~~R~~~L~~ 132 (385)
T PRK09578 63 QAEVRARVAGIVTA----------RTYEEGQEVKQGAVLFRIDPAPLKAARDAAAGALAKAEAAHLAALDKRRRYDDLVR 132 (385)
T ss_pred EEEEeccCcEEEEE----------EECCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35799999998853 57999999999999999985311
Q ss_pred --------------------------------------eeeeecCCCeEEEEEecCCCCcccCC--CeEEEEecC
Q 024168 229 --------------------------------------EIPIESDIAGEVIKILRKDGDPIGYG--DPLIVILPS 263 (271)
Q Consensus 229 --------------------------------------~~~V~Ap~~G~V~~Ilv~~Gd~V~~G--q~L~~I~~~ 263 (271)
...|+||++|+|.+.+++.|+.|..| ++|+.|...
T Consensus 133 ~~~iS~~~~~~~~~~~~~a~a~~~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~v~~G~~V~~g~~~~l~~i~~~ 207 (385)
T PRK09578 133 DRAVSERDYTEAVADERQAKAAVASAKAELARAQLQLDYATVTAPIDGRARRALVTEGALVGQDQATPLTTVEQL 207 (385)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEECCCCeEEEeeecCCCCeecCCCCcceEEEEec
Confidence 13699999999999999999999885 589988643
No 63
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=97.66 E-value=0.00012 Score=68.52 Aligned_cols=35 Identities=9% Similarity=0.160 Sum_probs=32.0
Q ss_pred eeeecCCCeEEEEEecCCCCcccCCCeEEEEecCC
Q 024168 230 IPIESDIAGEVIKILRKDGDPIGYGDPLIVILPSF 264 (271)
Q Consensus 230 ~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~~ 264 (271)
..|+||++|+|..+.++.|+.|..|++|+.|.+..
T Consensus 204 ~~I~AP~dG~V~~~~~~~G~~V~~G~~l~~I~~~~ 238 (331)
T PRK03598 204 TELIAPSDGTILTRAVEPGTMLNAGSTVFTLSLTR 238 (331)
T ss_pred CEEECCCCeEEEeccCCCCCCcCCCCeEEEEecCC
Confidence 37999999999999999999999999999997653
No 64
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=97.63 E-value=0.0001 Score=51.71 Aligned_cols=35 Identities=26% Similarity=0.480 Sum_probs=32.1
Q ss_pred eeeecCCCeEEEEEecCCCCcccCCCeEEEEecCC
Q 024168 230 IPIESDIAGEVIKILRKDGDPIGYGDPLIVILPSF 264 (271)
Q Consensus 230 ~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~~ 264 (271)
..|.++++|+|.++++++|+.|..||+|+++....
T Consensus 3 ~~I~~~~~G~V~~v~V~~G~~VkkGd~L~~ld~~~ 37 (50)
T PF13533_consen 3 VTIQAPVSGRVESVYVKEGQQVKKGDVLLVLDSPD 37 (50)
T ss_pred EEEeCCCCEEEEEEEecCCCEEcCCCEEEEECcHH
Confidence 46899999999999999999999999999998643
No 65
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=97.61 E-value=0.0001 Score=80.84 Aligned_cols=73 Identities=23% Similarity=0.379 Sum_probs=65.5
Q ss_pred ceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEe
Q 024168 182 LVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVIL 261 (271)
Q Consensus 182 ~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~ 261 (271)
-..++||..|.+.+ +.|+.|+.|.+||+-+.||.|||.+++.|..+|+|. .+.+.|+.++.|+.|+++.
T Consensus 685 pt~LrsPs~GKLl~----------ylVedG~hv~~Gq~YAeiEvMKMvm~lva~~~G~i~-~i~~~G~~i~aG~vlakL~ 753 (2196)
T KOG0368|consen 685 PTVLRSPSPGKLLQ----------YLVEDGEHVEAGQPYAEIEVMKMVMPLVAKEPGRIQ-LIKQEGDAIEAGSVLAKLT 753 (2196)
T ss_pred cceecCCCCccceE----------EEecCCCceecCCeeeehehhheeeeeeccCCceEE-EecCCCCccCccceeEEee
Confidence 35789999999864 789999999999999999999999999999999876 5579999999999999998
Q ss_pred cCCC
Q 024168 262 PSFP 265 (271)
Q Consensus 262 ~~~~ 265 (271)
-++|
T Consensus 754 lDdp 757 (2196)
T KOG0368|consen 754 LDDP 757 (2196)
T ss_pred cCCh
Confidence 6654
No 66
>PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [].; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex; PDB: 3KLR_A 2EDG_A 1ONL_B 2KA7_A 1ZKO_A 3TZU_C 3MXU_A 3A8I_F 3A8J_E 3A7A_B ....
Probab=97.56 E-value=0.00021 Score=59.05 Aligned_cols=58 Identities=24% Similarity=0.327 Sum_probs=44.6
Q ss_pred cCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEe---cCCCCccc---C-CCeEEEEecCCC
Q 024168 208 CKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKIL---RKDGDPIG---Y-GDPLIVILPSFP 265 (271)
Q Consensus 208 V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Il---v~~Gd~V~---~-Gq~L~~I~~~~~ 265 (271)
-++|+.|++|++++.||+.|...++.||++|+|+++. .++-+.+. | ..+|+.|++.++
T Consensus 39 p~~g~~~~~g~~~~~ies~k~~~~l~sPvsG~Vv~vN~~l~~~P~lln~~p~~~gWl~~i~~~d~ 103 (122)
T PF01597_consen 39 PKVGTKLKKGDPFASIESSKAVSDLYSPVSGTVVEVNEELLDNPELLNSDPYGDGWLIKIKPSDP 103 (122)
T ss_dssp B-TT-EE-TTSEEEEEEESSEEEEEEESSSEEEEEE-GHHHT-TTHHHHSTTTTTEEEEEEESCG
T ss_pred ccCCCEEecCCcEEEEEECceeeecccceEEEEEEEccccccChHHhccCCCCCCeEEEEEeCCH
Confidence 3779999999999999999999999999999999994 44444432 5 448999998665
No 67
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=97.50 E-value=0.00034 Score=67.16 Aligned_cols=71 Identities=17% Similarity=0.159 Sum_probs=59.5
Q ss_pred ceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecC----------------------------------
Q 024168 182 LVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLG---------------------------------- 227 (271)
Q Consensus 182 ~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK---------------------------------- 227 (271)
...|.++..|.+.. .++++||.|++||+|+.|+.-.
T Consensus 61 ~~~l~~~v~G~V~~----------i~v~~G~~VkkGqvLa~ld~~~~~~~l~~a~a~l~~a~a~~~~a~~~~~R~~~L~~ 130 (385)
T PRK09859 61 VAEIRPQVGGIIIK----------RNFIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARITFNRQASLLK 130 (385)
T ss_pred EEEEeccCcEEEEE----------EEcCCcCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46799999998853 5799999999999999998420
Q ss_pred -------------------------------------eeeeeecCCCeEEEEEecCCCCcccCCC--eEEEEec
Q 024168 228 -------------------------------------GEIPIESDIAGEVIKILRKDGDPIGYGD--PLIVILP 262 (271)
Q Consensus 228 -------------------------------------~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq--~L~~I~~ 262 (271)
-...|+||++|+|.+..++.|+.|..|+ +||.|..
T Consensus 131 ~~~is~~~~d~a~~~~~~a~a~~~~a~a~l~~a~~~L~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i~~ 204 (385)
T PRK09859 131 TNYVSRQDYDTARTQLNEAEANVTVAKAAVEQATINLQYANVTSPITGVSGKSSVTVGALVTANQADSLVTVQR 204 (385)
T ss_pred cCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCEEECCCCeEEcceecCCCCeECCCCCcceEEEEe
Confidence 1247999999999999999999999985 6888754
No 68
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=97.49 E-value=0.00054 Score=64.34 Aligned_cols=66 Identities=17% Similarity=0.172 Sum_probs=56.1
Q ss_pred ceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEec---CeeeeeecCCCeEEEEEecCCCCcccCCCeEE
Q 024168 182 LVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQL---GGEIPIESDIAGEVIKILRKDGDPIGYGDPLI 258 (271)
Q Consensus 182 ~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEam---K~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~ 258 (271)
...|+||..|.|+ +.++.||.|++||+|+.|-.. ....+|+||.+|+|.-+. ..-.|..|++|+
T Consensus 229 ~~~v~A~~~Gl~~-----------~~~~~G~~V~~Gq~lg~i~dp~~g~~~~~v~Ap~dGiv~~~~--~~p~v~~G~~l~ 295 (298)
T cd06253 229 VVYVNAETSGIFV-----------PAKHLGDIVKRGDVIGEIVDPLEGEVIEEVIAPCDGILFTLR--EYPLVYEGSLVA 295 (298)
T ss_pred eEEEEcCCCeEEE-----------ECcCCCCEECCCCEEEEEeCCCCCCeeEEEEcCCCeEEEEee--cCCeecCCceEE
Confidence 5789999999997 358999999999999988652 346789999999998875 556899999999
Q ss_pred EE
Q 024168 259 VI 260 (271)
Q Consensus 259 ~I 260 (271)
.|
T Consensus 296 ~i 297 (298)
T cd06253 296 RI 297 (298)
T ss_pred Ee
Confidence 87
No 69
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=97.48 E-value=0.00035 Score=67.50 Aligned_cols=72 Identities=18% Similarity=0.221 Sum_probs=59.4
Q ss_pred ceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCe---------------------------------
Q 024168 182 LVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGG--------------------------------- 228 (271)
Q Consensus 182 ~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~--------------------------------- 228 (271)
...|.++..|.+.. .+|++||.|++||+|+.|+.-..
T Consensus 65 ~~~l~a~vsG~V~~----------v~v~~Gd~VkkGqvLa~ld~~~~~~~l~~a~A~l~~A~a~l~~a~~~~~R~~~L~~ 134 (397)
T PRK15030 65 IAEVRPQVSGIILK----------RNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLG 134 (397)
T ss_pred EEEEEecCcEEEEE----------EEcCCCCEecCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999998853 57999999999999999984211
Q ss_pred --------------------------------------eeeeecCCCeEEEEEecCCCCcccCCCe--EEEEecC
Q 024168 229 --------------------------------------EIPIESDIAGEVIKILRKDGDPIGYGDP--LIVILPS 263 (271)
Q Consensus 229 --------------------------------------~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~--L~~I~~~ 263 (271)
...|+||++|+|.++.++.|+.|..|++ ||.|...
T Consensus 135 ~g~is~~~~d~a~~~~~~a~a~~~~a~a~l~~a~~~l~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i~~~ 209 (397)
T PRK15030 135 TQYISKQEYDQALADAQQANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATVQQL 209 (397)
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEcCCCeEEeeeecCCCCEECCCCCceEEEEEec
Confidence 1359999999999999999999999985 7777543
No 70
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=97.41 E-value=0.0009 Score=63.15 Aligned_cols=68 Identities=22% Similarity=0.216 Sum_probs=56.2
Q ss_pred ceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEec----CeeeeeecCCCeEEEEEecCCCCcccCCCeE
Q 024168 182 LVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQL----GGEIPIESDIAGEVIKILRKDGDPIGYGDPL 257 (271)
Q Consensus 182 ~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEam----K~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L 257 (271)
...|+||..|.|+ ++++.||.|++||+|+.|-.. ....+|+||.+|+|.-+. ..-.|..|++|
T Consensus 244 ~~~v~A~~~G~~~-----------~~~~~G~~V~~G~~lg~i~d~~~~g~~~~~v~Ap~~Giv~~~~--~~~~v~~G~~l 310 (316)
T cd06252 244 RCYVFAPHPGLFE-----------PLVDLGDEVSAGQVAGRIHFPERPGRPPLEIRAPDGGVLAARR--PPGLVRRGDCL 310 (316)
T ss_pred cEEEEcCCCeEEE-----------EecCCCCEEcCCCEEEEEECCCCCCCceEEEEcCCCeEEEEee--CCCccCCCCEE
Confidence 4679999999997 468999999999999998764 345689999999998664 33569999999
Q ss_pred EEEec
Q 024168 258 IVILP 262 (271)
Q Consensus 258 ~~I~~ 262 (271)
+.|..
T Consensus 311 ~~i~~ 315 (316)
T cd06252 311 AVLAA 315 (316)
T ss_pred EEEec
Confidence 98854
No 71
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=97.34 E-value=0.00054 Score=65.30 Aligned_cols=72 Identities=19% Similarity=0.221 Sum_probs=59.2
Q ss_pred ceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCe---------------------------------
Q 024168 182 LVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGG--------------------------------- 228 (271)
Q Consensus 182 ~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~--------------------------------- 228 (271)
...|.+|..|.+.. +++++||.|++||+|+.|+.-..
T Consensus 61 ~~~l~a~~~G~V~~----------v~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~~~l~~a~~~l~~a~~~~~ 130 (370)
T PRK11578 61 KVDVGAQVSGQLKT----------LSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTLS 130 (370)
T ss_pred EEEEecccceEEEE----------EEcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999998853 67999999999999999986310
Q ss_pred ----------------------------------------------------eeeeecCCCeEEEEEecCCCCcccCCC-
Q 024168 229 ----------------------------------------------------EIPIESDIAGEVIKILRKDGDPIGYGD- 255 (271)
Q Consensus 229 ----------------------------------------------------~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq- 255 (271)
...|+||++|+|..+.++.|+.|..|+
T Consensus 131 r~~~L~~~g~is~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~I~AP~dG~V~~~~~~~G~~V~~~~~ 210 (370)
T PRK11578 131 RQQRLAKTQAVSQQDLDTAATELAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQ 210 (370)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCEEECCCCcEEEeeecCCCcEeecccC
Confidence 126999999999999999999998764
Q ss_pred --eEEEEecC
Q 024168 256 --PLIVILPS 263 (271)
Q Consensus 256 --~L~~I~~~ 263 (271)
+|+.|...
T Consensus 211 ~~~l~~i~~~ 220 (370)
T PRK11578 211 APNILTLADM 220 (370)
T ss_pred CceEEEEecC
Confidence 78887543
No 72
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=97.27 E-value=0.0007 Score=66.05 Aligned_cols=73 Identities=26% Similarity=0.263 Sum_probs=59.9
Q ss_pred CceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCe--------------------------------
Q 024168 181 GLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGG-------------------------------- 228 (271)
Q Consensus 181 ~~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~-------------------------------- 228 (271)
+...|.++..|.+.. .++++||.|++||+|+.|+....
T Consensus 86 ~~v~v~~~vsG~V~~----------i~v~eG~~VkkGq~La~ld~~~~~~~l~qaqa~l~~a~a~l~~A~~~~~R~~~L~ 155 (415)
T PRK11556 86 NTVTVRSRVDGQLMA----------LHFQEGQQVKAGDLLAEIDPRPFKVALAQAQGQLAKDQATLANARRDLARYQQLA 155 (415)
T ss_pred eEEEEEccccEEEEE----------EECCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999998853 57999999999999999964210
Q ss_pred ---------------------------------------eeeeecCCCeEEEEEecCCCCcccCCC--eEEEEecC
Q 024168 229 ---------------------------------------EIPIESDIAGEVIKILRKDGDPIGYGD--PLIVILPS 263 (271)
Q Consensus 229 ---------------------------------------~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq--~L~~I~~~ 263 (271)
...|+||++|+|..+.++.|+.|..|+ +|+.|...
T Consensus 156 ~~g~is~~~ld~~~~~~~~a~a~l~~a~a~l~~a~~~L~~~~I~AP~~G~V~~~~v~~G~~V~~g~~~~l~~i~~~ 231 (415)
T PRK11556 156 KTNLVSRQELDAQQALVSETEGTIKADEASVASAQLQLDYSRITAPISGRVGLKQVDVGNQISSGDTTGIVVITQT 231 (415)
T ss_pred hcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEeccCcCCCceecCCCCceeEEEecC
Confidence 237999999999999999999999984 78877543
No 73
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=97.27 E-value=0.0014 Score=61.10 Aligned_cols=65 Identities=28% Similarity=0.363 Sum_probs=53.2
Q ss_pred eEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEec--CeeeeeecCCCeEEEEEecCCCCcccCCCeEEEE
Q 024168 183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQL--GGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVI 260 (271)
Q Consensus 183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEam--K~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I 260 (271)
..|+||..|.|+. .++.||.|++||+|+.|... ....+|+||.+|+|..+. ..-.|..|+.|+.|
T Consensus 220 ~~v~A~~~G~~~~-----------~~~~Gd~V~~G~~ig~i~d~~~~~~~~v~ap~~G~v~~~~--~~~~v~~G~~l~~i 286 (287)
T cd06251 220 VWVRAPQGGLLRS-----------LVKLGDKVKKGQLLATITDPFGEEEAEVKAPFDGIVIGRN--NLPLVNEGDALFHI 286 (287)
T ss_pred eEEecCCCeEEEE-----------ecCCCCEECCCCEEEEEECCCCCceEEEECCCCeEEEEec--CCCccCCCCEEEEe
Confidence 5799999999963 58999999999999999642 223689999999996654 55578899999876
No 74
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=97.20 E-value=0.00042 Score=55.71 Aligned_cols=41 Identities=29% Similarity=0.386 Sum_probs=36.4
Q ss_pred CCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEe
Q 024168 203 RAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKIL 244 (271)
Q Consensus 203 ~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Il 244 (271)
-..+.|++||.|++||.|+..+. -+..+|.|+++|+|+.|.
T Consensus 41 ~~~p~V~~Gd~V~~GQ~Ia~~~~-~~sa~iHAsvSG~V~~I~ 81 (101)
T PF13375_consen 41 PAEPVVKVGDKVKKGQLIAEAEG-FLSAPIHASVSGTVTAIE 81 (101)
T ss_pred cceEEEcCCCEEcCCCEEEecCC-CcEeeEEcCCCeEEEEEe
Confidence 35789999999999999999985 556799999999999984
No 75
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=97.20 E-value=0.0005 Score=63.00 Aligned_cols=33 Identities=30% Similarity=0.456 Sum_probs=23.8
Q ss_pred CceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEE
Q 024168 181 GLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIE 224 (271)
Q Consensus 181 ~~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IE 224 (271)
+...|.+|..|.+ . ++|++||.|++||+|+.|+
T Consensus 20 ~~~~v~~~~~G~v-~----------~~v~~G~~V~kG~~L~~ld 52 (328)
T PF12700_consen 20 NEVSVSAPVSGRV-S----------VNVKEGDKVKKGQVLAELD 52 (328)
T ss_dssp SEEEE--SS-EEE-E----------E-S-TTSEEETT-EEEEEE
T ss_pred EEEEEECCCCEEE-E----------EEeCCcCEECCCCEEEEEE
Confidence 4478999999998 4 6799999999999999998
No 76
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=97.13 E-value=0.00077 Score=50.02 Aligned_cols=34 Identities=26% Similarity=0.603 Sum_probs=31.1
Q ss_pred eeeecCCCeEEEEEecCCCCcccCCCeEEEEecC
Q 024168 230 IPIESDIAGEVIKILRKDGDPIGYGDPLIVILPS 263 (271)
Q Consensus 230 ~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~ 263 (271)
-.|+||++|+|.+++++.||.|+.||+|+.++..
T Consensus 3 ~~v~a~~~G~i~~~~v~~Gd~V~~g~~l~~ve~~ 36 (71)
T PRK05889 3 EDVRAEIVASVLEVVVNEGDQIGKGDTLVLLESM 36 (71)
T ss_pred cEEeCCCCEEEEEEEeCCCCEECCCCEEEEEEec
Confidence 4699999999999999999999999999988753
No 77
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=97.11 E-value=0.019 Score=53.77 Aligned_cols=32 Identities=28% Similarity=0.480 Sum_probs=29.5
Q ss_pred eeecCCCeEEEE-------EecCCCCcccCCCeEEEEec
Q 024168 231 PIESDIAGEVIK-------ILRKDGDPIGYGDPLIVILP 262 (271)
Q Consensus 231 ~V~Ap~~G~V~~-------Ilv~~Gd~V~~Gq~L~~I~~ 262 (271)
.|.||+.|+|.+ ++++.||.|+.||+|+.|+.
T Consensus 199 ~V~APmaGtf~r~p~pge~w~VkvGDsVkkGQvLavIEA 237 (274)
T PLN02983 199 PLKSPMAGTFYRSPAPGEPPFVKVGDKVQKGQVVCIIEA 237 (274)
T ss_pred eEeCCcCeEEEeccCCCCcceeCCCCEecCCCEEEEEEe
Confidence 389999999999 59999999999999999984
No 78
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=97.10 E-value=0.002 Score=61.49 Aligned_cols=65 Identities=15% Similarity=0.172 Sum_probs=54.2
Q ss_pred eEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecC----eeeeeecCCCeEEEEEecCCCCcccCCCeEE
Q 024168 183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLG----GEIPIESDIAGEVIKILRKDGDPIGYGDPLI 258 (271)
Q Consensus 183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK----~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~ 258 (271)
..|+||..|.|+ +.++.||.|++||+|+.|-... ...+|+||.+|+|..+. ..-.|..|+.|+
T Consensus 256 ~~v~Ap~~Gi~~-----------~~v~~G~~V~~G~~lg~I~d~~~~G~~~~~i~Ap~dGiV~~~~--~~~~V~~Gd~l~ 322 (325)
T TIGR02994 256 CFIFAEDDGLIE-----------FMIDLGDPVSKGDVIARVYPVGRTGVAPVEYRAKRDGLLAARH--FPGLIKSGDCIA 322 (325)
T ss_pred eEEEcCCCeEEE-----------EecCCCCEeCCCCEEEEEECCCCCCCceEEEEeCCCcEEEEEe--CCCccCCCCEEE
Confidence 579999999997 3589999999999999987532 35689999999999864 456788899888
Q ss_pred EE
Q 024168 259 VI 260 (271)
Q Consensus 259 ~I 260 (271)
.|
T Consensus 323 ~i 324 (325)
T TIGR02994 323 VL 324 (325)
T ss_pred Ee
Confidence 76
No 79
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=97.04 E-value=0.00088 Score=46.92 Aligned_cols=37 Identities=27% Similarity=0.398 Sum_probs=31.4
Q ss_pred eEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCee
Q 024168 183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGE 229 (271)
Q Consensus 183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~ 229 (271)
..|.+|..|.+. .++|++||.|++||+|+.|+.....
T Consensus 3 ~~I~~~~~G~V~----------~v~V~~G~~VkkGd~L~~ld~~~~~ 39 (50)
T PF13533_consen 3 VTIQAPVSGRVE----------SVYVKEGQQVKKGDVLLVLDSPDLQ 39 (50)
T ss_pred EEEeCCCCEEEE----------EEEecCCCEEcCCCEEEEECcHHHH
Confidence 468999999885 4789999999999999999865543
No 80
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=97.02 E-value=0.0024 Score=59.47 Aligned_cols=33 Identities=24% Similarity=0.463 Sum_probs=29.5
Q ss_pred eeecCCCeEEEEEecCCCCcccCCCeEEEEecCC
Q 024168 231 PIESDIAGEVIKILRKDGDPIGYGDPLIVILPSF 264 (271)
Q Consensus 231 ~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~~ 264 (271)
.|+||++|+|..+.+..|+.|.. ++||.|.+..
T Consensus 206 ~i~AP~dG~V~~~~~~~G~~v~~-~~l~~i~~~~ 238 (327)
T TIGR02971 206 YVKAPIDGRVLKIHAREGEVIGS-EGILEMGDTS 238 (327)
T ss_pred EEECCCCeEEEEEecCCCCccCC-CccEEEecCC
Confidence 57899999999999999999986 8999988754
No 81
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=97.01 E-value=0.0024 Score=59.45 Aligned_cols=65 Identities=26% Similarity=0.386 Sum_probs=51.0
Q ss_pred CceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEe--cCeeeeeecCCCeEEEEEecCCCCcccCCCeEE
Q 024168 181 GLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQ--LGGEIPIESDIAGEVIKILRKDGDPIGYGDPLI 258 (271)
Q Consensus 181 ~~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEa--mK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~ 258 (271)
+...++||..|.|+ ++++.||.|++||+|+.|-. .....+|+||.+|.|.-+.. .-.|..|++|+
T Consensus 222 ~~~~v~Ap~~G~~~-----------~~~~~G~~V~~G~~lg~i~dp~g~~~~~i~Ap~dG~v~~~~~--~~~v~~G~~l~ 288 (288)
T cd06254 222 DVYYVTSPASGLWY-----------PFVKAGDTVQKGALLGYVTDYFGNVIAEYRAPFDGVVLYNTA--TLPVRKGDPLA 288 (288)
T ss_pred CCEEEecCCCeEEE-----------EecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEeeC--CCccCCCCccC
Confidence 44789999999996 46899999999999998843 23456899999999998753 34566676653
No 82
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=96.95 E-value=0.0033 Score=60.68 Aligned_cols=67 Identities=24% Similarity=0.219 Sum_probs=53.5
Q ss_pred CceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecC-e-eee--eecCCCeEEEEEecCCCCcccCCCe
Q 024168 181 GLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLG-G-EIP--IESDIAGEVIKILRKDGDPIGYGDP 256 (271)
Q Consensus 181 ~~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK-~-~~~--V~Ap~~G~V~~Ilv~~Gd~V~~Gq~ 256 (271)
+...|+||..|.|+ +.++.||.|++||+|+.|-..- - ..+ |+||.+|+|.-+. ..-.|..|++
T Consensus 288 ~~~~v~Ap~~Gl~~-----------~~~~~Gd~V~~G~~lg~I~d~~g~~~~~~~v~Ap~dGiv~~~~--~~~~V~~G~~ 354 (359)
T cd06250 288 GVEMLYAPAGGMVV-----------YRAAPGDWVEAGDVLAEILDPLGDGVGPVEIRAPTDGLLFARA--SRRFVRAGDE 354 (359)
T ss_pred CcEEEeCCCCeEEE-----------EecCCCCEecCCCEEEEEECCCCCccceeEEECCCCcEEEEec--CCccccCCCe
Confidence 45689999999997 4589999999999999885321 1 123 5999999998765 6668999999
Q ss_pred EEEE
Q 024168 257 LIVI 260 (271)
Q Consensus 257 L~~I 260 (271)
|+.|
T Consensus 355 l~~I 358 (359)
T cd06250 355 LAKI 358 (359)
T ss_pred EEEe
Confidence 9986
No 83
>PRK12784 hypothetical protein; Provisional
Probab=96.82 E-value=0.0029 Score=49.00 Aligned_cols=71 Identities=20% Similarity=0.157 Sum_probs=63.7
Q ss_pred eEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeee-eeecCCCeEEEEEecCCCCcccCCCeEEEEe
Q 024168 183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEI-PIESDIAGEVIKILRKDGDPIGYGDPLIVIL 261 (271)
Q Consensus 183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~-~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~ 261 (271)
..|.||.-|.+. +.|+.+++.|-+.+.|..|+.|.... .|.-.++|.|.-+.|+.||.|..++.|+.++
T Consensus 6 e~iyS~~~G~Ve----------kifi~esSyVYEWEkL~~I~~~dg~le~v~vGiSG~I~~v~Ve~Gq~i~~dtlL~~~e 75 (84)
T PRK12784 6 EEICSSYEGKVE----------EIFVNESSYVYEWEKLMMIRKNNGELEKVAVGISGNIRLVNVVVGQQIHTDTLLVRLE 75 (84)
T ss_pred hhhcCccccEEE----------EEEEcCCceEEeeeeeeEEeecCCcEEEEEEeeeeeEEEEEeecCceecCCcEEEEEe
Confidence 458999999884 57999999999999999999887665 5888999999999999999999999999998
Q ss_pred cC
Q 024168 262 PS 263 (271)
Q Consensus 262 ~~ 263 (271)
.+
T Consensus 76 dD 77 (84)
T PRK12784 76 DD 77 (84)
T ss_pred ec
Confidence 64
No 84
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=96.79 E-value=0.0023 Score=47.09 Aligned_cols=34 Identities=26% Similarity=0.455 Sum_probs=31.7
Q ss_pred eeeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168 229 EIPIESDIAGEVIKILRKDGDPIGYGDPLIVILP 262 (271)
Q Consensus 229 ~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~ 262 (271)
|..|.||++|+|.+++++.||.|+.||+|+.++.
T Consensus 1 ~~~i~a~~~G~i~~~~v~~G~~V~~g~~l~~ve~ 34 (70)
T PRK08225 1 MTKVYASMAGNVWKIVVKVGDTVEEGQDVVILES 34 (70)
T ss_pred CCeEeCCCCEEEEEEEeCCCCEECCCCEEEEEEc
Confidence 4579999999999999999999999999999875
No 85
>PRK06748 hypothetical protein; Validated
Probab=96.73 E-value=0.0031 Score=49.17 Aligned_cols=34 Identities=18% Similarity=0.101 Sum_probs=31.8
Q ss_pred eeeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168 229 EIPIESDIAGEVIKILRKDGDPIGYGDPLIVILP 262 (271)
Q Consensus 229 ~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~ 262 (271)
..-|+||+.|+|.+++++.||.|+.||+|+.|+.
T Consensus 4 ~~~v~sp~~G~I~~w~vk~GD~V~~gd~l~~IET 37 (83)
T PRK06748 4 IEGVYSPCYGKVEKLFVRESSYVYEWEKLALIET 37 (83)
T ss_pred eeEEecCCcEEEEEEEeCCCCEECCCCEEEEEEc
Confidence 3468999999999999999999999999999987
No 86
>COG3608 Predicted deacylase [General function prediction only]
Probab=96.52 E-value=0.0043 Score=59.53 Aligned_cols=66 Identities=24% Similarity=0.289 Sum_probs=50.5
Q ss_pred ceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEec---CeeeeeecCCCeEEEEEecCCCCcccCCCeEE
Q 024168 182 LVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQL---GGEIPIESDIAGEVIKILRKDGDPIGYGDPLI 258 (271)
Q Consensus 182 ~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEam---K~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~ 258 (271)
..-|.||..|.|. +.|+.||.|++||+|++|-.+ ....||+|+++|+|..+. .--.|..|+.|+
T Consensus 256 ~~~i~Ap~~G~v~-----------~~v~lGd~VeaG~~la~i~~~~~~~~~~eirA~~~G~i~~~r--~~~~v~~Gdl~~ 322 (331)
T COG3608 256 DEMIRAPAGGLVE-----------FLVDLGDKVEAGDVLATIHDPPLGEGEAEIRAPVSGIIIARR--SLRLVQPGDLLK 322 (331)
T ss_pred cceeecCCCceEE-----------EeecCCCcccCCCeEEEEecCCCCCcceEEEcCCCceEEEEe--eccccCCCCeee
Confidence 3468999999884 469999999999999999887 566799999999999874 222444445444
Q ss_pred EE
Q 024168 259 VI 260 (271)
Q Consensus 259 ~I 260 (271)
.+
T Consensus 323 ~v 324 (331)
T COG3608 323 VV 324 (331)
T ss_pred ee
Confidence 44
No 87
>KOG3373 consensus Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=96.41 E-value=0.0035 Score=54.58 Aligned_cols=57 Identities=23% Similarity=0.249 Sum_probs=49.2
Q ss_pred CCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEe---cCCCCccc----CCCeEEEEecCCC
Q 024168 209 KEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKIL---RKDGDPIG----YGDPLIVILPSFP 265 (271)
Q Consensus 209 ~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Il---v~~Gd~V~----~Gq~L~~I~~~~~ 265 (271)
++|..|.+|+-+|-+|..|...+|.+|++|+|++|. .++-..|. .+-+|+.++..++
T Consensus 89 e~Gt~vskgds~gavESVKaaSeIysp~sGeVtEiNe~l~EnPGlvN~Sp~e~GWl~k~kls~~ 152 (172)
T KOG3373|consen 89 EVGTEVSKGDSFGAVESVKAASEIYSPVSGEVTEINEKLEENPGLVNESPEEDGWLIKMKLSSP 152 (172)
T ss_pred CCCCccccCcceeeeeehhhhhhhhCcCCceEEEeccccccCCCcccCCcccCceEEEEEeCCH
Confidence 679999999999999999999999999999999994 55555665 4569999998766
No 88
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=96.38 E-value=0.0054 Score=43.32 Aligned_cols=31 Identities=35% Similarity=0.712 Sum_probs=29.5
Q ss_pred eecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168 232 IESDIAGEVIKILRKDGDPIGYGDPLIVILP 262 (271)
Q Consensus 232 V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~ 262 (271)
|+||++|+|.+++++.|+.|+.||+|+.++.
T Consensus 2 v~a~~~G~v~~~~v~~G~~v~~g~~l~~i~~ 32 (67)
T cd06850 2 VTAPMPGTVVKVLVKEGDKVEAGQPLAVLEA 32 (67)
T ss_pred ccCCccEEEEEEEeCCCCEECCCCEEEEEEc
Confidence 7899999999999999999999999999875
No 89
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=96.07 E-value=0.0083 Score=50.63 Aligned_cols=35 Identities=29% Similarity=0.447 Sum_probs=32.1
Q ss_pred eeeeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168 228 GEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILP 262 (271)
Q Consensus 228 ~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~ 262 (271)
-...|+||..|++.+++|+.||.|..||.|+.|+.
T Consensus 69 ~~~~V~SPm~Gtv~~~~V~vGd~V~~Gq~l~IiEA 103 (140)
T COG0511 69 GGTQVTSPMVGTVYKPFVEVGDTVKAGQTLAIIEA 103 (140)
T ss_pred cCceEecCcceEEEEEeeccCCEEcCCCEEEEEEe
Confidence 34679999999999999999999999999999883
No 90
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=95.91 E-value=0.013 Score=49.35 Aligned_cols=33 Identities=24% Similarity=0.503 Sum_probs=31.1
Q ss_pred eeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168 230 IPIESDIAGEVIKILRKDGDPIGYGDPLIVILP 262 (271)
Q Consensus 230 ~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~ 262 (271)
..|+||++|+|.++++++||.|+.||+|+.++.
T Consensus 62 ~~v~Ap~~G~V~~i~V~~Gd~V~~Gq~L~~lEa 94 (130)
T PRK06549 62 DAMPSPMPGTILKVLVAVGDQVTENQPLLILEA 94 (130)
T ss_pred cEEECCCCEEEEEEEeCCCCEECCCCEEEEEec
Confidence 468999999999999999999999999999985
No 91
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=95.86 E-value=0.011 Score=44.22 Aligned_cols=33 Identities=36% Similarity=0.600 Sum_probs=28.9
Q ss_pred eeeecCCCeEEEE------EecCCCCcccCCCeEEEEec
Q 024168 230 IPIESDIAGEVIK------ILRKDGDPIGYGDPLIVILP 262 (271)
Q Consensus 230 ~~V~Ap~~G~V~~------Ilv~~Gd~V~~Gq~L~~I~~ 262 (271)
.+|++|..|.+.+ +++++|+.|+.||+|+.|+.
T Consensus 1 ~~i~~P~~G~~~~~~~i~~~~v~~G~~V~~G~~l~~iet 39 (74)
T PF00364_consen 1 TEIKAPMLGEVMEEGTITKWLVEEGDKVKKGDPLAEIET 39 (74)
T ss_dssp EEEEESSSSEEEEEEEEEEESSSTTEEESTTSEEEEEES
T ss_pred CEEECCCCccEEEecceeEEEECCCCEEEcCceEEEEEc
Confidence 3688888887666 99999999999999999985
No 92
>PF13437 HlyD_3: HlyD family secretion protein
Probab=95.73 E-value=0.018 Score=44.82 Aligned_cols=33 Identities=27% Similarity=0.491 Sum_probs=30.9
Q ss_pred eeecCCCeEEEEEecCCCCcccCCCeEEEEecC
Q 024168 231 PIESDIAGEVIKILRKDGDPIGYGDPLIVILPS 263 (271)
Q Consensus 231 ~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~ 263 (271)
.|+||++|+|..+.++.|+.|..|++|+.|.+.
T Consensus 1 ~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~ 33 (105)
T PF13437_consen 1 TIRAPFDGVVVSINVQPGEVVSAGQPLAEIVDT 33 (105)
T ss_pred CEECCCCEEEEEEeCCCCCEECCCCEEEEEEcc
Confidence 489999999999999999999999999999875
No 93
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=95.59 E-value=0.045 Score=51.24 Aligned_cols=51 Identities=25% Similarity=0.253 Sum_probs=42.2
Q ss_pred ceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecC--eeeeeecCCCeEEEEE
Q 024168 182 LVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLG--GEIPIESDIAGEVIKI 243 (271)
Q Consensus 182 ~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK--~~~~V~Ap~~G~V~~I 243 (271)
...|+||..|.|+ +.++.|+.|++||+|+.|-..= ...+++||.+|+|.-+
T Consensus 231 ~~~v~Ap~~Gi~~-----------~~~~~G~~V~~Gq~lg~I~dp~g~~~~~v~Ap~dGiV~~~ 283 (293)
T cd06255 231 RDWVAAIHGGLFE-----------PSVPAGDTIPAGQPLGRVVDLYGAEVLEASPPRDGIVIGI 283 (293)
T ss_pred eEEEecCCCeEEE-----------EecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEe
Confidence 4689999999997 3589999999999999886321 2346999999999987
No 94
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=95.52 E-value=0.022 Score=53.79 Aligned_cols=41 Identities=22% Similarity=0.490 Sum_probs=36.4
Q ss_pred EEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEecC
Q 024168 221 CYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPS 263 (271)
Q Consensus 221 ~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~ 263 (271)
++|++. ...|.++++|+|.++++++||.|..||+|++|.+.
T Consensus 42 ~~v~~~--~v~v~~~v~G~V~~v~V~~G~~VkkGq~L~~ld~~ 82 (346)
T PRK10476 42 AYIDAD--VVHVASEVGGRIVELAVTENQAVKKGDLLFRIDPR 82 (346)
T ss_pred eEEEee--eEEEcccCceEEEEEEeCCCCEEcCCCEEEEECcH
Confidence 666654 57899999999999999999999999999999864
No 95
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=95.45 E-value=0.052 Score=47.56 Aligned_cols=66 Identities=17% Similarity=0.231 Sum_probs=49.6
Q ss_pred eEEeCCcCeEEEecccccCCCCCCccCCCCeEec----CCeEEEEEecCeeeeeecCCCeEEE-----------------
Q 024168 183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVRE----GQVLCYIEQLGGEIPIESDIAGEVI----------------- 241 (271)
Q Consensus 183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~----Gq~l~~IEamK~~~~V~Ap~~G~V~----------------- 241 (271)
..|.||..|.+.. .-++-|.|=+ |+-+++.=. ...|.||++|+|.
T Consensus 21 ~~i~aP~~G~vi~-----------L~~V~D~vFs~k~mGdGvAI~P~---~~~v~AP~dG~V~~vf~T~HAigi~t~~G~ 86 (169)
T PRK09439 21 IEIIAPLSGEIVN-----------IEDVPDVVFAEKIVGDGIAIKPT---GNKMVAPVDGTIGKIFETNHAFSIESDSGV 86 (169)
T ss_pred eEEEecCCeEEEE-----------hHHCCChHhcccCccceEEEEcc---CCEEEecCCeEEEEEcCCCCEEEEEeCCCc
Confidence 5699999999863 3345555533 677776543 3689999999998
Q ss_pred ------------------EEecCCCCcccCCCeEEEEec
Q 024168 242 ------------------KILRKDGDPIGYGDPLIVILP 262 (271)
Q Consensus 242 ------------------~Ilv~~Gd~V~~Gq~L~~I~~ 262 (271)
+.+++.||.|..||+|+++-.
T Consensus 87 eiLIHiGiDTV~L~G~gF~~~Vk~Gd~Vk~G~~L~~~D~ 125 (169)
T PRK09439 87 ELFVHFGIDTVELKGEGFKRIAEEGQRVKVGDPIIEFDL 125 (169)
T ss_pred EEEEEEeecccccCCCceEEEecCCCEEeCCCEEEEEcH
Confidence 446889999999999998853
No 96
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=95.44 E-value=0.022 Score=49.03 Aligned_cols=34 Identities=18% Similarity=0.514 Sum_probs=31.2
Q ss_pred eeeecCCCeEEEEEecCCCCcccCCCeEEEEecC
Q 024168 230 IPIESDIAGEVIKILRKDGDPIGYGDPLIVILPS 263 (271)
Q Consensus 230 ~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~ 263 (271)
..|.||.+|+|.++++++||.|+.||+|+.++..
T Consensus 85 ~~v~ap~~G~I~~~~V~~Gd~V~~Gq~l~~iEam 118 (153)
T PRK05641 85 NVVTAPMPGKILRILVREGQQVKVGQGLLILEAM 118 (153)
T ss_pred CEEECCCCeEEEEEEeCCCCEEcCCCEEEEEeec
Confidence 5689999999999999999999999999998743
No 97
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=95.38 E-value=0.023 Score=56.59 Aligned_cols=41 Identities=24% Similarity=0.312 Sum_probs=35.5
Q ss_pred CCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEec
Q 024168 204 APPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILR 245 (271)
Q Consensus 204 ~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv 245 (271)
..+.|++||.|++||.|+.-+.. ...++.||++|+|++|..
T Consensus 41 ~k~~Vk~GD~V~~Gq~I~~~~~~-~s~~ihApvSGtV~~I~~ 81 (447)
T TIGR01936 41 PKMKVRPGDKVKAGQPLFEDKKN-PGVKFTSPVSGEVVAINR 81 (447)
T ss_pred CceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEec
Confidence 35889999999999999987644 468999999999999954
No 98
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=95.08 E-value=0.024 Score=52.75 Aligned_cols=35 Identities=29% Similarity=0.543 Sum_probs=32.5
Q ss_pred eeeeecCCCeEEEEEecCCCCcccCCCeEEEEecC
Q 024168 229 EIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPS 263 (271)
Q Consensus 229 ~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~ 263 (271)
...|.|+++|+|.+++++.||.|..||+|++|.+.
T Consensus 42 ~~~v~a~~~G~V~~i~v~~G~~V~kGq~L~~ld~~ 76 (334)
T TIGR00998 42 QLQVSSQVSGSVIEVNVDDTDYVKQGDVLVRLDPT 76 (334)
T ss_pred eEEEcccCceEEEEEEeCCCCEEcCCCEEEEECch
Confidence 46899999999999999999999999999999754
No 99
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=95.06 E-value=0.036 Score=52.71 Aligned_cols=44 Identities=20% Similarity=0.222 Sum_probs=38.2
Q ss_pred EEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEecCC
Q 024168 221 CYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPSF 264 (271)
Q Consensus 221 ~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~~ 264 (271)
|.|...+....|.++.+|+|.+++|++||.|..|++|+.+....
T Consensus 35 G~v~~~~~~~~v~~~~~G~v~~i~V~eG~~V~kG~~L~~ld~~~ 78 (423)
T TIGR01843 35 GKVVPSGNVKVVQHLEGGIVREILVREGDRVKAGQVLVELDATD 78 (423)
T ss_pred eEEEECCCeeecccCCCcEEEEEEeCCCCEecCCCeEEEEccch
Confidence 45566666677999999999999999999999999999997654
No 100
>PF04952 AstE_AspA: Succinylglutamate desuccinylase / Aspartoacylase family; InterPro: IPR007036 This family describes both succinylglutamate desuccinylase that catalyses the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway and also includes aspartoacylase 3.5.1.15 from EC which cleaves acylaspartate into a fatty acid and aspartate. Mutations in P45381 from SWISSPROT lead to Canavan disease [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0008152 metabolic process; PDB: 3CDX_A 3FMC_A 3NA6_A 2BCO_B 3B2Y_A 3LWU_A 3IEH_A 2QVP_B 2G9D_A 1YW4_A ....
Probab=95.02 E-value=0.064 Score=49.16 Aligned_cols=67 Identities=24% Similarity=0.295 Sum_probs=53.3
Q ss_pred eEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeE--EEEEecC--eeeeeecCCCeEEEEEecCCCCcccCCCeEE
Q 024168 183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVL--CYIEQLG--GEIPIESDIAGEVIKILRKDGDPIGYGDPLI 258 (271)
Q Consensus 183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l--~~IEamK--~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~ 258 (271)
..+.||..|.|+ +.++.||.|++||+| +.+-..- ...+|+||.+|+|.-+. ..-.|..|+.|+
T Consensus 221 ~~~~a~~~G~~~-----------~~~~~g~~v~~G~~l~~~~~~~~~~~~~~~v~a~~~g~ii~~~--~~~~v~~G~~l~ 287 (292)
T PF04952_consen 221 EWVRAPAGGLFE-----------PEVKLGDDVEKGDLLGRGEIFDPFGGEVIEVRAPQDGIIIFIR--ESPYVEQGDALA 287 (292)
T ss_dssp CEEESSSSEEEE-----------ETSSTTTTETTTCEEETEEEEEETTSTEEEEESSSSEEEESEC--TSSECTTTEEEE
T ss_pred eeecCCccEEEE-----------EeecCCCceECCcccCCeeeecCCCCceEEEEeCCCEEEEEeC--cccccCCCCeEE
Confidence 579999999996 358999999999999 6544322 33589999999998664 667899999999
Q ss_pred EEec
Q 024168 259 VILP 262 (271)
Q Consensus 259 ~I~~ 262 (271)
.+..
T Consensus 288 ~v~~ 291 (292)
T PF04952_consen 288 KVAK 291 (292)
T ss_dssp EEEE
T ss_pred EEec
Confidence 8753
No 101
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=94.93 E-value=0.031 Score=55.70 Aligned_cols=41 Identities=27% Similarity=0.297 Sum_probs=35.0
Q ss_pred CCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEec
Q 024168 204 APPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILR 245 (271)
Q Consensus 204 ~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv 245 (271)
..+.|++||.|++||.|+.-+.. ...++.||++|+|++|..
T Consensus 42 ~~~~V~~GD~V~~Gq~I~~~~~~-~s~~~hspvSGtV~~I~~ 82 (448)
T PRK05352 42 PKMKVKEGDKVKKGQPLFEDKKN-PGVKFTSPASGTVVAINR 82 (448)
T ss_pred CceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEcc
Confidence 45889999999999999976543 458999999999999953
No 102
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=94.65 E-value=0.04 Score=50.44 Aligned_cols=42 Identities=21% Similarity=0.390 Sum_probs=29.5
Q ss_pred CeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168 218 QVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILP 262 (271)
Q Consensus 218 q~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~ 262 (271)
..-|+++. -...|.++++|.| ++++++|+.|..||+|+++..
T Consensus 12 ~~~G~v~~--~~~~v~~~~~G~v-~~~v~~G~~V~kG~~L~~ld~ 53 (328)
T PF12700_consen 12 EASGTVEP--NEVSVSAPVSGRV-SVNVKEGDKVKKGQVLAELDS 53 (328)
T ss_dssp EEEEEEEE--SEEEE--SS-EEE-EE-S-TTSEEETT-EEEEEE-
T ss_pred EEEEEEEE--EEEEEECCCCEEE-EEEeCCcCEECCCCEEEEEEC
Confidence 34567776 4467999999999 999999999999999999975
No 103
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=94.65 E-value=0.036 Score=54.69 Aligned_cols=40 Identities=28% Similarity=0.295 Sum_probs=35.0
Q ss_pred CCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEe
Q 024168 204 APPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKIL 244 (271)
Q Consensus 204 ~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Il 244 (271)
..+.|++||.|++||.|+..+ .....+|.||++|+|++|.
T Consensus 43 ~~~~V~~Gd~V~~Gq~i~~~~-~~~~~~~ha~vsG~V~~i~ 82 (435)
T TIGR01945 43 AEPIVKVGDKVLKGQKIAKAD-GFVSAPIHAPTSGTVVAIE 82 (435)
T ss_pred CceeeCCCCEECCCCEeccCC-CcceeeeecCCCeEEEEec
Confidence 468999999999999999984 3356899999999999995
No 104
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=94.64 E-value=0.069 Score=50.08 Aligned_cols=35 Identities=14% Similarity=0.291 Sum_probs=32.4
Q ss_pred eeeeecCCCeEEEEEecCCCCcccCCCeEEEEecC
Q 024168 229 EIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPS 263 (271)
Q Consensus 229 ~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~ 263 (271)
...|.++++|+|+++++++||.|..||+|++|...
T Consensus 43 ~i~v~a~~~G~V~~i~v~~Gd~V~kG~~L~~ld~~ 77 (331)
T PRK03598 43 TVNLGFRVGGRLASLAVDEGDAVKAGQVLGELDAA 77 (331)
T ss_pred EEEeecccCcEEEEEEcCCCCEEcCCCEEEEEChH
Confidence 46899999999999999999999999999999754
No 105
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=94.61 E-value=0.033 Score=56.36 Aligned_cols=44 Identities=23% Similarity=0.141 Sum_probs=38.5
Q ss_pred CCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEe---cCCCC
Q 024168 204 APPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKIL---RKDGD 249 (271)
Q Consensus 204 ~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Il---v~~Gd 249 (271)
..++|++||.|.+||.|..=+. .+.+|.||++|+|++|. +.++.
T Consensus 45 ~~~~Vkvgd~V~~GQ~l~~~~g--~~~~vHaP~sG~V~~I~~~~~~~~s 91 (529)
T COG4656 45 GILLVKVGDKVLKGQPLTRGEG--IMLPVHAPTSGTVTAIEPANFPHPS 91 (529)
T ss_pred cceEEeeCCEEeeCceeeccCC--ceeeeeCCCCceeeeeeecccCCcc
Confidence 5688999999999999998775 88999999999999998 44443
No 106
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=94.60 E-value=0.063 Score=52.95 Aligned_cols=43 Identities=21% Similarity=0.096 Sum_probs=35.9
Q ss_pred EEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEecC
Q 024168 221 CYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPS 263 (271)
Q Consensus 221 ~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~ 263 (271)
|.|....-...|.++..|+|.+|+|++||.|..||+|+++.+.
T Consensus 51 G~v~p~~~~~~vq~~~~G~v~~i~V~eG~~V~~G~~L~~ld~~ 93 (457)
T TIGR01000 51 GTIEPAKILSKIQSTSNNAIKENYLKENKFVKKGDLLVVYDNG 93 (457)
T ss_pred EEEEecCceEEEEcCCCcEEEEEEcCCCCEecCCCEEEEECch
Confidence 3444444456899999999999999999999999999999764
No 107
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=94.59 E-value=0.068 Score=48.78 Aligned_cols=40 Identities=23% Similarity=0.426 Sum_probs=33.7
Q ss_pred EEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168 222 YIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILP 262 (271)
Q Consensus 222 ~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~ 262 (271)
.|+... ...|.|+.+|+|.++++++|+.|..||+|+.+..
T Consensus 20 ~v~~~~-~~~v~a~~~G~V~~i~v~~G~~V~kG~~L~~l~~ 59 (322)
T TIGR01730 20 SLEAVD-EADLAAEVAGKITKISVREGQKVKKGQVLARLDD 59 (322)
T ss_pred EEEEee-EEEEEccccEEEEEEEcCCCCEEcCCCEEEEECC
Confidence 344333 3579999999999999999999999999999964
No 108
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=94.56 E-value=0.046 Score=52.99 Aligned_cols=35 Identities=29% Similarity=0.523 Sum_probs=32.8
Q ss_pred eeeeecCCCeEEEEEecCCCCcccCCCeEEEEecC
Q 024168 229 EIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPS 263 (271)
Q Consensus 229 ~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~ 263 (271)
...|.++++|+|.+++|++||.|..||+|++|.+.
T Consensus 61 ~v~v~a~v~G~V~~v~V~~Gd~VkkGqvL~~LD~~ 95 (390)
T PRK15136 61 QVQIMSQVSGSVTKVWADNTDFVKEGDVLVTLDPT 95 (390)
T ss_pred EEEEeccCCeEEEEEEcCCCCEECCCCEEEEECcH
Confidence 57899999999999999999999999999999764
No 109
>PRK07051 hypothetical protein; Validated
Probab=94.39 E-value=0.062 Score=40.84 Aligned_cols=35 Identities=23% Similarity=0.265 Sum_probs=32.2
Q ss_pred eeeeecCCCeEEEE-------EecCCCCcccCCCeEEEEecC
Q 024168 229 EIPIESDIAGEVIK-------ILRKDGDPIGYGDPLIVILPS 263 (271)
Q Consensus 229 ~~~V~Ap~~G~V~~-------Ilv~~Gd~V~~Gq~L~~I~~~ 263 (271)
+.+|+||..|++.+ ++++.|+.|..|++|+.++..
T Consensus 3 ~~~~~ap~~g~~~~~~~~~~~~~v~~Gd~V~~g~~l~~ve~~ 44 (80)
T PRK07051 3 QHEIVSPLPGTFYRRPSPDAPPYVEVGDAVAAGDVVGLIEVM 44 (80)
T ss_pred ccEEeCCCceEEEecCCCCCCCccCCCCEECCCCEEEEEEEc
Confidence 56899999999999 999999999999999998863
No 110
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=94.35 E-value=0.063 Score=52.48 Aligned_cols=45 Identities=20% Similarity=0.364 Sum_probs=38.5
Q ss_pred CeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEecC
Q 024168 218 QVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPS 263 (271)
Q Consensus 218 q~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~ 263 (271)
...|.|++.. ...|.++++|+|.+|+++.|+.|..||+|++|.+.
T Consensus 77 ~~~Gtv~a~~-~v~v~~~vsG~V~~i~v~eG~~VkkGq~La~ld~~ 121 (415)
T PRK11556 77 TGLGTVTAAN-TVTVRSRVDGQLMALHFQEGQQVKAGDLLAEIDPR 121 (415)
T ss_pred EEEEEEEeee-EEEEEccccEEEEEEECCCCCEecCCCEEEEECcH
Confidence 3557777753 46799999999999999999999999999999763
No 111
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=94.30 E-value=0.071 Score=51.84 Aligned_cols=35 Identities=23% Similarity=0.255 Sum_probs=32.3
Q ss_pred eeeeecCCCeEEEEEecCCCCcccCCCeEEEEecC
Q 024168 229 EIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPS 263 (271)
Q Consensus 229 ~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~ 263 (271)
...|.++.+|+|.+++|++|+.|..||+|++|...
T Consensus 58 ~~~v~a~~~G~V~~i~V~eG~~V~kGq~L~~l~~~ 92 (421)
T TIGR03794 58 VDTIQSPGSGVVIDLDVEVGDQVKKGQVVARLFQP 92 (421)
T ss_pred eeEEECCCCeEEEEEECCCcCEECCCCEEEEECcH
Confidence 45899999999999999999999999999999764
No 112
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=94.26 E-value=0.07 Score=51.21 Aligned_cols=44 Identities=18% Similarity=0.292 Sum_probs=37.6
Q ss_pred eEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEecC
Q 024168 219 VLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPS 263 (271)
Q Consensus 219 ~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~ 263 (271)
..|.|++.. ...|.++++|+|.++.++.||.|..||+|++|.+.
T Consensus 54 ~~G~v~~~~-~~~l~~~v~G~V~~v~v~~Gd~VkkGq~La~ld~~ 97 (385)
T PRK09578 54 LPGRLDAYR-QAEVRARVAGIVTARTYEEGQEVKQGAVLFRIDPA 97 (385)
T ss_pred EEEEEEEee-EEEEeccCcEEEEEEECCCCCEEcCCCEEEEECCH
Confidence 446677654 46899999999999999999999999999999653
No 113
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=94.25 E-value=0.14 Score=43.17 Aligned_cols=65 Identities=23% Similarity=0.295 Sum_probs=44.8
Q ss_pred eEEeCCcCeEEEecccccCCCCCCccCCCCeE----ecCCeEEEEEecCeeeeeecCCCeEEE-----------------
Q 024168 183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTV----REGQVLCYIEQLGGEIPIESDIAGEVI----------------- 241 (271)
Q Consensus 183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V----~~Gq~l~~IEamK~~~~V~Ap~~G~V~----------------- 241 (271)
..|.||..|.+..-. ++-|.+ --|+-+++.=.. ..|.||++|+|.
T Consensus 3 ~~i~aPv~G~vi~l~-----------~v~D~vFs~~~lG~GvaI~p~~---~~v~AP~~G~v~~i~~T~HAi~i~s~~G~ 68 (132)
T PF00358_consen 3 ITIYAPVSGKVIPLE-----------EVPDPVFSQKMLGDGVAIIPSD---GKVYAPVDGTVTMIFPTKHAIGIRSDNGV 68 (132)
T ss_dssp EEEE-SSSEEEEEGG-----------GSSSHHHHTTSSSEEEEEEESS---SEEEESSSEEEEEE-TTSSEEEEEETTSE
T ss_pred eEEEeeCCcEEEEhh-----------hCCchHHCCCCCcCEEEEEcCC---CeEEEEeeEEEEEEcCCCCEEEEEeCCCC
Confidence 579999999987533 344444 236777775433 479999999998
Q ss_pred ------------------EEecCCCCcccCCCeEEEEe
Q 024168 242 ------------------KILRKDGDPIGYGDPLIVIL 261 (271)
Q Consensus 242 ------------------~Ilv~~Gd~V~~Gq~L~~I~ 261 (271)
+.+++.||.|..||+|+.+-
T Consensus 69 eiLiHiGidTv~L~G~gF~~~v~~G~~V~~G~~L~~~D 106 (132)
T PF00358_consen 69 EILIHIGIDTVKLNGEGFETLVKEGDKVKAGQPLIEFD 106 (132)
T ss_dssp EEEEE-SBSGGGGTTTTEEESS-TTSEE-TTEEEEEE-
T ss_pred EEEEEEccchhhcCCcceEEEEeCCCEEECCCEEEEEc
Confidence 44678899999999999875
No 114
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=94.18 E-value=0.057 Score=56.59 Aligned_cols=40 Identities=23% Similarity=0.267 Sum_probs=34.2
Q ss_pred CCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEe
Q 024168 204 APPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKIL 244 (271)
Q Consensus 204 ~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Il 244 (271)
..+.|++||.|.+||.|+.-+. -...+|.||++|+|+.|.
T Consensus 49 ~~~~V~~GD~V~~GQ~i~~~~~-~~s~~vhApvSG~V~~I~ 88 (695)
T PRK05035 49 GELCVKVGDRVLKGQPLTQGDG-RMSLPVHAPTSGTVVAIE 88 (695)
T ss_pred CcceeCcCCEEcCCCEeeecCC-CceeEEeCCCCeEEeeec
Confidence 4689999999999999996542 245899999999999985
No 115
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=94.18 E-value=0.082 Score=50.41 Aligned_cols=43 Identities=19% Similarity=0.275 Sum_probs=36.1
Q ss_pred eEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168 219 VLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILP 262 (271)
Q Consensus 219 ~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~ 262 (271)
.-|.|++... ..|.|+++|.|.++.+++|+.|..||+|+.+.+
T Consensus 52 ~~G~v~~~~~-~~l~a~~~G~V~~v~v~~G~~V~kG~~L~~ld~ 94 (370)
T PRK11578 52 ATGKLDALRK-VDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDP 94 (370)
T ss_pred EEEEEEeeeE-EEEecccceEEEEEEcCCCCEEcCCCEEEEECc
Confidence 3455555443 589999999999999999999999999999965
No 116
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=94.11 E-value=0.077 Score=50.99 Aligned_cols=45 Identities=24% Similarity=0.304 Sum_probs=38.5
Q ss_pred CeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEecC
Q 024168 218 QVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPS 263 (271)
Q Consensus 218 q~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~ 263 (271)
+..|.|++.. ...|.++++|.|.++.++.|+.|..||+|++|.+.
T Consensus 51 ~~~G~v~~~~-~~~l~~~v~G~V~~i~v~~G~~VkkGqvLa~ld~~ 95 (385)
T PRK09859 51 ELPGRTVPYE-VAEIRPQVGGIIIKRNFIEGDKVNQGDSLYQIDPA 95 (385)
T ss_pred EEEEEEEEEE-EEEEeccCcEEEEEEEcCCcCEecCCCEEEEECcH
Confidence 3556777665 46799999999999999999999999999999754
No 117
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=94.11 E-value=0.14 Score=42.71 Aligned_cols=20 Identities=20% Similarity=0.298 Sum_probs=17.0
Q ss_pred EEecCCCCcccCCCeEEEEe
Q 024168 242 KILRKDGDPIGYGDPLIVIL 261 (271)
Q Consensus 242 ~Ilv~~Gd~V~~Gq~L~~I~ 261 (271)
+++++.||.|..||+|+++-
T Consensus 83 ~~~vk~Gd~V~~G~~l~~~D 102 (124)
T cd00210 83 TSHVEEGQRVKQGDKLLEFD 102 (124)
T ss_pred EEEecCCCEEcCCCEEEEEc
Confidence 44688999999999999885
No 118
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=94.04 E-value=0.13 Score=42.78 Aligned_cols=20 Identities=25% Similarity=0.428 Sum_probs=17.4
Q ss_pred EEecCCCCcccCCCeEEEEe
Q 024168 242 KILRKDGDPIGYGDPLIVIL 261 (271)
Q Consensus 242 ~Ilv~~Gd~V~~Gq~L~~I~ 261 (271)
+.+++.||.|..||+|+++-
T Consensus 83 ~~~v~~Gd~V~~G~~l~~~D 102 (121)
T TIGR00830 83 TSHVEEGQRVKKGDPLLEFD 102 (121)
T ss_pred EEEecCCCEEcCCCEEEEEc
Confidence 55688999999999999886
No 119
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=93.88 E-value=0.09 Score=50.86 Aligned_cols=43 Identities=21% Similarity=0.231 Sum_probs=36.6
Q ss_pred EEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEecC
Q 024168 220 LCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPS 263 (271)
Q Consensus 220 l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~ 263 (271)
.|.|++.. ...|.+.++|+|.++.++.||.|..||+|++|.+.
T Consensus 57 ~G~v~a~~-~~~l~a~vsG~V~~v~v~~Gd~VkkGqvLa~ld~~ 99 (397)
T PRK15030 57 PGRTSAYR-IAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPA 99 (397)
T ss_pred EEEEEEEE-EEEEEecCcEEEEEEEcCCCCEecCCCEEEEECCH
Confidence 35566544 47899999999999999999999999999999764
No 120
>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function. ; PDB: 3D4R_D.
Probab=93.86 E-value=0.1 Score=45.07 Aligned_cols=39 Identities=33% Similarity=0.615 Sum_probs=30.2
Q ss_pred CccCCCCeEecCCeEEEEEecCeee-eeecCCCeEEEEEe
Q 024168 206 PSCKEKQTVREGQVLCYIEQLGGEI-PIESDIAGEVIKIL 244 (271)
Q Consensus 206 ~~V~~Gd~V~~Gq~l~~IEamK~~~-~V~Ap~~G~V~~Il 244 (271)
+++.+|+.|++||.|+.+.+.|... -++||++|+|+-|.
T Consensus 94 ~i~~~G~rV~~gd~lA~v~T~KGeVR~iksp~~G~Vv~v~ 133 (150)
T PF09891_consen 94 PIVDEGDRVRKGDRLAYVTTRKGEVRYIKSPVEGTVVFVI 133 (150)
T ss_dssp ESS-TSEEE-TT-EEEEEE-TTS-EEEEE-SSSEEEEEEE
T ss_pred EEcccCcEeccCcEEEEEEecCcceEEecCCCcEEEEEEE
Confidence 6789999999999999999999876 59999999999875
No 121
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=93.78 E-value=0.26 Score=42.77 Aligned_cols=65 Identities=25% Similarity=0.286 Sum_probs=45.5
Q ss_pred eEEeCCcCeEEEecccccCCCCCCccCCCCeEe----cCCeEEEEEecCeeeeeecCCCeEEE-----------------
Q 024168 183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVR----EGQVLCYIEQLGGEIPIESDIAGEVI----------------- 241 (271)
Q Consensus 183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~----~Gq~l~~IEamK~~~~V~Ap~~G~V~----------------- 241 (271)
..|.||+.|.+..-. ++-|.|= -||-+++. .....|.||++|+|.
T Consensus 6 ~~i~sP~~G~vv~Ls-----------~VpD~vFs~k~mGdGiAI~---P~~g~vvAPvdG~v~~iFpTkHAigi~t~~Gv 71 (156)
T COG2190 6 EEIYSPLSGEVVPLS-----------DVPDPVFSEKMVGDGVAIK---PSEGEVVAPVDGTVVLIFPTKHAIGIETDEGV 71 (156)
T ss_pred EEEEccCCceEEEch-----------hCCchHhhcccccCcEEEe---cCCCeEEeccCcEEEEEeeCCcEEEEEcCCCc
Confidence 578999999876432 2222221 25666663 334678888888887
Q ss_pred ------------------EEecCCCCcccCCCeEEEEe
Q 024168 242 ------------------KILRKDGDPIGYGDPLIVIL 261 (271)
Q Consensus 242 ------------------~Ilv~~Gd~V~~Gq~L~~I~ 261 (271)
+.+++.||.|..||+|+++-
T Consensus 72 EiLiHiGiDTV~L~GegF~~~v~~Gd~Vk~Gd~Li~fD 109 (156)
T COG2190 72 EILIHIGIDTVKLNGEGFESLVKEGDKVKAGDPLLEFD 109 (156)
T ss_pred EEEEEeceeeEEECCcceEEEeeCCCEEccCCEEEEEC
Confidence 45689999999999999874
No 122
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=93.63 E-value=0.12 Score=57.05 Aligned_cols=71 Identities=20% Similarity=0.250 Sum_probs=53.8
Q ss_pred CceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEE
Q 024168 181 GLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVI 260 (271)
Q Consensus 181 ~~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I 260 (271)
+...|...+.|..+. ..|+.++.+..++.....+.. -...|.||+.|+|.+++++.||.|..||+|+.|
T Consensus 1037 g~r~v~fElNGq~re----------V~V~D~s~~~~~~~~~KAd~~-~~~~I~a~~~G~v~~~~v~~Gd~V~~Gd~L~~i 1105 (1143)
T TIGR01235 1037 GEREVFFELNGQPRR----------IKVPDRSHKAEAAVRRKADPG-NPAHVGAPMPGVIIEVKVSSGQAVNKGDPLVVL 1105 (1143)
T ss_pred CcEEEEEEECCeEEE----------EEecCcccccccccccccccc-cCceeecCCCcEEEEEEeCCCCEeCCCCEEEEE
Confidence 446677777787643 456777777666665444322 224699999999999999999999999999999
Q ss_pred ec
Q 024168 261 LP 262 (271)
Q Consensus 261 ~~ 262 (271)
+.
T Consensus 1106 Ea 1107 (1143)
T TIGR01235 1106 EA 1107 (1143)
T ss_pred Ee
Confidence 84
No 123
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=93.52 E-value=0.092 Score=49.39 Aligned_cols=34 Identities=21% Similarity=0.371 Sum_probs=31.6
Q ss_pred eeeecCCCeEEEEEecCCCCcccCCCeEEEEecC
Q 024168 230 IPIESDIAGEVIKILRKDGDPIGYGDPLIVILPS 263 (271)
Q Consensus 230 ~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~ 263 (271)
..|.++++|+|.++.+++||.|..||+|+++.+.
T Consensus 48 v~i~~~v~G~V~~v~V~~Gd~VkkGqvLa~Ld~~ 81 (310)
T PRK10559 48 VAIAPDVSGLITQVNVHDNQLVKKGQVLFTIDQP 81 (310)
T ss_pred EEEccCCceEEEEEEeCCcCEEcCCCEEEEECcH
Confidence 5699999999999999999999999999999763
No 124
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=93.32 E-value=0.13 Score=45.95 Aligned_cols=35 Identities=14% Similarity=0.096 Sum_probs=31.5
Q ss_pred eeeecCCCeEEEEEecCCCCcccCCCeEEEEecCC
Q 024168 230 IPIESDIAGEVIKILRKDGDPIGYGDPLIVILPSF 264 (271)
Q Consensus 230 ~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~~ 264 (271)
..|+||++|+|..+.+..|+.|..|++|+.|.+..
T Consensus 89 ~~i~AP~dG~V~~~~~~~G~~v~~g~~l~~i~~~~ 123 (265)
T TIGR00999 89 VEVRSPFDGYITQKSVTLGDYVAPQAELFRVADLG 123 (265)
T ss_pred EEEECCCCeEEEEEEcCCCCEeCCCCceEEEEcCC
Confidence 36899999999999999999999999999987643
No 125
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=93.24 E-value=0.14 Score=47.80 Aligned_cols=40 Identities=28% Similarity=0.261 Sum_probs=31.7
Q ss_pred CCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEec
Q 024168 205 PPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILR 245 (271)
Q Consensus 205 ~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv 245 (271)
.-.|++||.|++||+|.+=.... ..-..||++|+|++|..
T Consensus 42 km~VkeGD~Vk~Gq~LF~dK~~p-~v~ftsPvsG~V~~I~R 81 (257)
T PF05896_consen 42 KMLVKEGDRVKAGQPLFEDKKNP-GVKFTSPVSGTVKAINR 81 (257)
T ss_pred cEEeccCCEEeCCCeeEeeCCCC-CcEEecCCCeEEEEEec
Confidence 46799999999999999843211 23478999999999976
No 126
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=93.13 E-value=0.11 Score=50.34 Aligned_cols=34 Identities=32% Similarity=0.550 Sum_probs=31.5
Q ss_pred eeeecCCCeEEEEEecCCCCcccCCCeEEEEecC
Q 024168 230 IPIESDIAGEVIKILRKDGDPIGYGDPLIVILPS 263 (271)
Q Consensus 230 ~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~ 263 (271)
..|-+.++|.|++++|.|.+.|..||+||+|.|.
T Consensus 54 v~Iap~VsG~V~eV~V~dnq~Vk~Gd~L~~iD~~ 87 (352)
T COG1566 54 VPIAPQVSGRVTEVNVKDNQLVKKGDVLFRIDPR 87 (352)
T ss_pred EEEcCcCceEEEEEEecCCCEecCCCeEEEECcH
Confidence 4788999999999999999999999999999864
No 127
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=92.33 E-value=0.18 Score=49.01 Aligned_cols=35 Identities=26% Similarity=0.308 Sum_probs=31.6
Q ss_pred eeeecCCCeEEEEEecCCCCcccCCCeEEEEecCC
Q 024168 230 IPIESDIAGEVIKILRKDGDPIGYGDPLIVILPSF 264 (271)
Q Consensus 230 ~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~~ 264 (271)
..|+||++|+|..+.+..|+.|..|++|+.|.+..
T Consensus 254 ~~i~AP~dG~V~~~~~~~G~~v~~g~~l~~i~~~~ 288 (421)
T TIGR03794 254 TRIVSQHSGRVIELNYTPGQLVAAGAPLASLEVED 288 (421)
T ss_pred CeEEcCCCeEEEEeeCCCCCEecCCCcEEEEEccC
Confidence 57999999999999999999999999999996543
No 128
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=92.03 E-value=0.19 Score=47.83 Aligned_cols=35 Identities=26% Similarity=0.381 Sum_probs=30.6
Q ss_pred eeeecCCCeEEEEEec-CCCCcccCCCeEEEEecCC
Q 024168 230 IPIESDIAGEVIKILR-KDGDPIGYGDPLIVILPSF 264 (271)
Q Consensus 230 ~~V~Ap~~G~V~~Ilv-~~Gd~V~~Gq~L~~I~~~~ 264 (271)
..|+||++|+|..+.+ ..|+.|..|++|+.|.+..
T Consensus 272 ~~i~AP~dG~V~~~~~~~~G~~v~~g~~l~~i~~~~ 307 (423)
T TIGR01843 272 LIIRSPVDGTVQSLKVHTVGGVVQPGETLMEIVPED 307 (423)
T ss_pred cEEECCCCcEEEEEEEEccCceecCCCeeEEEecCC
Confidence 3699999999999876 6999999999999998754
No 129
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=91.89 E-value=0.29 Score=47.81 Aligned_cols=44 Identities=18% Similarity=0.197 Sum_probs=36.2
Q ss_pred eEEEEEecC-eeeeeecCCCeEEEEEe-cCCCCcccCCCeEEEEec
Q 024168 219 VLCYIEQLG-GEIPIESDIAGEVIKIL-RKDGDPIGYGDPLIVILP 262 (271)
Q Consensus 219 ~l~~IEamK-~~~~V~Ap~~G~V~~Il-v~~Gd~V~~Gq~L~~I~~ 262 (271)
..+.|+... -...|.+.++|.|.+++ +..||.|..||+|++|..
T Consensus 112 ~~G~v~~~~~~~~~v~arv~G~V~~l~~~~~Gd~VkkGq~La~l~s 157 (409)
T PRK09783 112 FPANVSYNEYQYAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLTI 157 (409)
T ss_pred EeEEEEECCCceEEEeCCcCEEEEEEEecCCCCEECCCCEEEEEeC
Confidence 356666443 23479999999999998 999999999999999974
No 130
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=91.87 E-value=0.2 Score=51.68 Aligned_cols=33 Identities=30% Similarity=0.435 Sum_probs=31.1
Q ss_pred eeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168 230 IPIESDIAGEVIKILRKDGDPIGYGDPLIVILP 262 (271)
Q Consensus 230 ~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~ 262 (271)
.+|.||..|+|.+++|+.||.|+.||+|+.|+.
T Consensus 526 ~~v~apm~G~V~~~~V~~Gd~V~~Gq~L~~iEa 558 (596)
T PRK14042 526 GDITVAIPGSIIAIHVSAGDEVKAGQAVLVIEA 558 (596)
T ss_pred CeEecCcceEEEEEEeCCCCEeCCCCEEEEEEe
Confidence 469999999999999999999999999999984
No 131
>PF13437 HlyD_3: HlyD family secretion protein
Probab=91.72 E-value=0.23 Score=38.55 Aligned_cols=33 Identities=21% Similarity=0.230 Sum_probs=28.2
Q ss_pred EEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEec
Q 024168 184 ILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQL 226 (271)
Q Consensus 184 ~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEam 226 (271)
.|+||..|.+.. .+++.|+.|.+|+.|+.|..+
T Consensus 1 ~i~AP~~G~V~~----------~~~~~G~~v~~g~~l~~i~~~ 33 (105)
T PF13437_consen 1 TIRAPFDGVVVS----------INVQPGEVVSAGQPLAEIVDT 33 (105)
T ss_pred CEECCCCEEEEE----------EeCCCCCEECCCCEEEEEEcc
Confidence 389999999964 457999999999999998864
No 132
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=91.31 E-value=0.41 Score=43.16 Aligned_cols=45 Identities=29% Similarity=0.403 Sum_probs=36.5
Q ss_pred CeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEecC
Q 024168 218 QVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPS 263 (271)
Q Consensus 218 q~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~ 263 (271)
...+.+++ .....|.+...|.|.+|++++||.|..||+|+.+...
T Consensus 56 ~~~G~~~~-~~~~~v~~~~~G~v~~i~v~~G~~Vk~Gq~L~~ld~~ 100 (372)
T COG0845 56 RAPGRVEA-TRSVEVLARVAGIVAEILVKEGDRVKKGQLLARLDPS 100 (372)
T ss_pred eeeeEEEe-eeeeeEecccccEEEEEEccCCCeecCCCEEEEECCc
Confidence 34455555 3334788889999999999999999999999999863
No 133
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=91.26 E-value=0.68 Score=48.37 Aligned_cols=66 Identities=20% Similarity=0.229 Sum_probs=47.8
Q ss_pred eEEeCCcCeEEEecccccCCCCCCccCCCCeEe----cCCeEEEEEecCeeeeeecCCCeEEE-----------------
Q 024168 183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVR----EGQVLCYIEQLGGEIPIESDIAGEVI----------------- 241 (271)
Q Consensus 183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~----~Gq~l~~IEamK~~~~V~Ap~~G~V~----------------- 241 (271)
..|.||..|++..- .++-|.|= -|+-+++.=. ...|.||++|+|+
T Consensus 499 ~~v~aP~~G~vi~l-----------~~v~D~vFs~~~~G~GvaI~P~---~~~v~AP~~G~v~~v~~T~HA~gi~t~~G~ 564 (648)
T PRK10255 499 AELVSPITGDVVAL-----------DQVPDEAFASKAVGDGVAVKPT---DKIVVSPAAGTIVKIFNTNHAFCLETEKGA 564 (648)
T ss_pred eEEEecCCcEEEEc-----------ccCcchhhhcccccCcEEEeCC---CCeEEecCCeEEEEEcCCCcEEEEEcCCCC
Confidence 56999999998642 23333332 2666666543 3589999999998
Q ss_pred ------------------EEecCCCCcccCCCeEEEEec
Q 024168 242 ------------------KILRKDGDPIGYGDPLIVILP 262 (271)
Q Consensus 242 ------------------~Ilv~~Gd~V~~Gq~L~~I~~ 262 (271)
+.+|++||.|..||+|+++..
T Consensus 565 eiLIHiGidTV~l~G~gF~~~Vk~Gd~V~~G~~l~~~D~ 603 (648)
T PRK10255 565 EIVVHMGIDTVALEGKGFKRLVEEGAQVSAGQPILEMDL 603 (648)
T ss_pred EEEEEeccchhccCCCCceEEecCCCEEcCCCEEEEEcH
Confidence 345889999999999998853
No 134
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=90.65 E-value=0.32 Score=50.08 Aligned_cols=33 Identities=24% Similarity=0.617 Sum_probs=31.2
Q ss_pred eeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168 230 IPIESDIAGEVIKILRKDGDPIGYGDPLIVILP 262 (271)
Q Consensus 230 ~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~ 262 (271)
..|.||..|+|.++++++||.|+.||+|+.|+.
T Consensus 518 ~~v~ap~~G~v~~~~V~~Gd~V~~G~~l~~iEa 550 (582)
T TIGR01108 518 TPVTAPIAGSIVKVKVSEGQTVAEGEVLLILEA 550 (582)
T ss_pred CeEeCCccEEEEEEEeCCCCEECCCCEEEEEEe
Confidence 479999999999999999999999999999984
No 135
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=90.64 E-value=0.31 Score=50.26 Aligned_cols=34 Identities=24% Similarity=0.612 Sum_probs=31.4
Q ss_pred eeeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168 229 EIPIESDIAGEVIKILRKDGDPIGYGDPLIVILP 262 (271)
Q Consensus 229 ~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~ 262 (271)
...|.||+.|+|.++++++||.|+.||+|+.++.
T Consensus 524 ~~~V~Ap~~G~I~~~~V~~Gd~V~~Gd~l~~iEa 557 (593)
T PRK14040 524 GEPVTAPLAGNIFKVIVTEGQTVAEGDVLLILEA 557 (593)
T ss_pred CceEECCccEEEEEEEeCCCCEeCCCCEEEEEec
Confidence 3479999999999999999999999999999874
No 136
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=90.18 E-value=0.54 Score=48.93 Aligned_cols=64 Identities=23% Similarity=0.211 Sum_probs=48.8
Q ss_pred EEeCCcCeEEEecccccCCCCCCccCCCCeEec----CCeEEEEEecCeeeeeecCCCeEEE------------------
Q 024168 184 ILESPKVGYFRRSRTIKGKRAPPSCKEKQTVRE----GQVLCYIEQLGGEIPIESDIAGEVI------------------ 241 (271)
Q Consensus 184 ~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~----Gq~l~~IEamK~~~~V~Ap~~G~V~------------------ 241 (271)
.|.||..|++.. .-++-|.|=. ||-+++.= ....|.||++|+|+
T Consensus 480 ~i~aP~~G~v~~-----------L~~v~D~vFs~~~mG~G~AI~P---~~~~v~AP~~G~v~~vf~T~HAigi~t~~G~e 545 (627)
T PRK09824 480 GICSPMTGEVVP-----------LEQVADTTFASGLLGKGIAILP---SVGEVRSPVAGRVASLFATLHAIGLESDDGVE 545 (627)
T ss_pred hcccccceEEee-----------HHHCCCccccccccCCceEecC---CCCeEEccCCeEEEEEcCCCcEEEEEeCCCcE
Confidence 589999999863 3455666644 66666643 33689999999998
Q ss_pred -----------------EEecCCCCcccCCCeEEEEe
Q 024168 242 -----------------KILRKDGDPIGYGDPLIVIL 261 (271)
Q Consensus 242 -----------------~Ilv~~Gd~V~~Gq~L~~I~ 261 (271)
+.+++.||.|..||+|+++.
T Consensus 546 iLiHiGiDTV~L~G~gF~~~v~~Gd~V~~G~~l~~~D 582 (627)
T PRK09824 546 VLIHVGIDTVKLDGKFFTAHVNVGDKVNTGDLLIEFD 582 (627)
T ss_pred EEEEechhhhhcCCCCceEEecCCCEEcCCCEEEEEc
Confidence 45678999999999999885
No 137
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=89.71 E-value=0.37 Score=49.55 Aligned_cols=32 Identities=25% Similarity=0.519 Sum_probs=30.1
Q ss_pred eeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168 231 PIESDIAGEVIKILRKDGDPIGYGDPLIVILP 262 (271)
Q Consensus 231 ~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~ 262 (271)
.+.||+.|+|+.++|++|+.|..||+|+.++.
T Consensus 577 ~l~aPMpG~v~~v~V~~G~~V~~G~~lvvlEA 608 (645)
T COG4770 577 ELLAPMPGTVVSVAVKEGQEVSAGDLLVVLEA 608 (645)
T ss_pred ceecCCCceEEEEEecCCCEecCCCeEEEeEe
Confidence 49999999999999999999999999999873
No 138
>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein. It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.
Probab=89.71 E-value=0.51 Score=41.59 Aligned_cols=52 Identities=19% Similarity=0.192 Sum_probs=41.5
Q ss_pred CccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEe
Q 024168 206 PSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVIL 261 (271)
Q Consensus 206 ~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~ 261 (271)
.++++|+.+++||.++.++-. ....+.-|.+ .++.++.|+.|..|+.|+--.
T Consensus 134 ~~~~~g~~v~kGeeiG~f~fG-Stv~ll~p~~---~~~~v~~G~~V~~G~tli~~~ 185 (189)
T TIGR00164 134 CYVKEGEKVSRGQRIGMIRFG-SRVDLYLPEN---AQAQVKVGEKVTAGETVLARL 185 (189)
T ss_pred EecCCCCEEecCcEEEEEecC-CeEEEEEcCC---CccccCCCCEEEeceEEEEEe
Confidence 357899999999999999955 4455666765 377899999999999776543
No 139
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=89.62 E-value=0.48 Score=40.72 Aligned_cols=33 Identities=15% Similarity=0.262 Sum_probs=29.8
Q ss_pred eeeecCCCeEEEE-------EecCCCCcccCCCeEEEEec
Q 024168 230 IPIESDIAGEVIK-------ILRKDGDPIGYGDPLIVILP 262 (271)
Q Consensus 230 ~~V~Ap~~G~V~~-------Ilv~~Gd~V~~Gq~L~~I~~ 262 (271)
..|+||..|++.+ ++++.||.|..||.|+.|+.
T Consensus 81 ~~v~sp~~G~~~~~~~P~~~~~v~~Gd~V~~Gq~l~iiEa 120 (156)
T TIGR00531 81 HFVRSPMVGTFYRAPSPDAKPFVEVGDKVKKGQIVCIVEA 120 (156)
T ss_pred CEEeCCCCEEEEecCCCCCCccccCCCEeCCCCEEEEEEe
Confidence 4689999999997 58999999999999999874
No 140
>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry.; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.
Probab=89.61 E-value=0.31 Score=44.07 Aligned_cols=34 Identities=32% Similarity=0.356 Sum_probs=22.0
Q ss_pred eEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEec
Q 024168 183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQL 226 (271)
Q Consensus 183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEam 226 (271)
+.|.++..|.+- +.+|++||.|++||+|+.|+.-
T Consensus 2 ~~Vq~~~~G~V~----------~i~V~eG~~VkkGq~L~~LD~~ 35 (305)
T PF00529_consen 2 KIVQSLVGGIVT----------EILVKEGQRVKKGQVLARLDPT 35 (305)
T ss_dssp EEE--SS-EEEE----------EE-S-TTEEE-TTSECEEE--H
T ss_pred EEEeCCCCeEEE----------EEEccCcCEEeCCCEEEEEEee
Confidence 468888888885 4689999999999999999853
No 141
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=89.40 E-value=0.88 Score=47.11 Aligned_cols=65 Identities=23% Similarity=0.259 Sum_probs=48.2
Q ss_pred EEeCCcCeEEEecccccCCCCCCccCCCCeEec----CCeEEEEEecCeeeeeecCCCeEEE------------------
Q 024168 184 ILESPKVGYFRRSRTIKGKRAPPSCKEKQTVRE----GQVLCYIEQLGGEIPIESDIAGEVI------------------ 241 (271)
Q Consensus 184 ~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~----Gq~l~~IEamK~~~~V~Ap~~G~V~------------------ 241 (271)
.|.||..|++..- -++-|.|=. ||-+++.= ....|.||++|+|.
T Consensus 464 ~i~aP~~G~~~~l-----------~~v~D~vFs~~~~G~G~ai~P---~~~~v~aP~~G~v~~~~~t~Ha~gi~~~~G~e 529 (610)
T TIGR01995 464 SLYAPVAGEMLPL-----------NEVPDEVFSSGAMGKGIAILP---TEGEVVAPVDGTVTAVFPTKHAIGIRSDNGIE 529 (610)
T ss_pred eeccccceEEeeH-----------hhCCCccccccCcCCceEeeC---CCCEEECCCCeEEEEEcCCCCEEEEEECCCcE
Confidence 5899999998643 344555543 66666643 34689999999888
Q ss_pred -----------------EEecCCCCcccCCCeEEEEec
Q 024168 242 -----------------KILRKDGDPIGYGDPLIVILP 262 (271)
Q Consensus 242 -----------------~Ilv~~Gd~V~~Gq~L~~I~~ 262 (271)
+.++++||.|..||+|+++..
T Consensus 530 iliHiGidTv~l~g~gF~~~v~~g~~V~~G~~l~~~d~ 567 (610)
T TIGR01995 530 ILIHVGIDTVELNGEGFEILVKVGDHVKAGQLLLTFDL 567 (610)
T ss_pred EEEEeccchhccCCCCeEEEecCcCEEcCCCEEEEecH
Confidence 456889999999999998853
No 142
>PRK05305 phosphatidylserine decarboxylase; Provisional
Probab=89.39 E-value=0.55 Score=41.96 Aligned_cols=49 Identities=16% Similarity=0.201 Sum_probs=40.0
Q ss_pred CccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEE
Q 024168 206 PSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLI 258 (271)
Q Consensus 206 ~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~ 258 (271)
.++++|+.+++||.++.++-. ....+.-|.+ .++.++.||.|..|+.++
T Consensus 154 ~~~~~g~~v~kGe~~G~f~fG-StV~l~~p~~---~~~~V~~G~kV~~Getvi 202 (206)
T PRK05305 154 CYVKEGDEVERGERFGLIRFG-SRVDVYLPLG---TEPLVSVGQKVVAGETVL 202 (206)
T ss_pred EeCCCCCEEccCcEEeEEecC-CeEEEEEcCC---CcccccCCCEEEcccEEE
Confidence 367899999999999999955 4556666665 378999999999999664
No 143
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=89.28 E-value=0.49 Score=48.83 Aligned_cols=33 Identities=30% Similarity=0.550 Sum_probs=31.2
Q ss_pred eeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168 230 IPIESDIAGEVIKILRKDGDPIGYGDPLIVILP 262 (271)
Q Consensus 230 ~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~ 262 (271)
..|.||++|+|.+++++.|+.|+.||+|+.++.
T Consensus 523 ~~V~Ap~~G~v~~~~V~~Gd~V~~Gq~L~~iea 555 (592)
T PRK09282 523 GAVTSPMPGTVVKVKVKEGDKVKAGDTVLVLEA 555 (592)
T ss_pred ceEeCCCcEEEEEEEeCCCCEECCCCEEEEEec
Confidence 579999999999999999999999999999874
No 144
>PRK12784 hypothetical protein; Provisional
Probab=89.17 E-value=0.34 Score=37.66 Aligned_cols=44 Identities=16% Similarity=0.169 Sum_probs=37.5
Q ss_pred cCeee-eeecCCCeEEEEEecCCCCcccCCCeEEEEecCCCCCCC
Q 024168 226 LGGEI-PIESDIAGEVIKILRKDGDPIGYGDPLIVILPSFPGIKL 269 (271)
Q Consensus 226 mK~~~-~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~~~~~~~ 269 (271)
||... +|.||+-|+|.++.+..++.|--=.+||.|+..+.-++|
T Consensus 1 mk~~ie~iyS~~~G~Vekifi~esSyVYEWEkL~~I~~~dg~le~ 45 (84)
T PRK12784 1 MKTRMEEICSSYEGKVEEIFVNESSYVYEWEKLMMIRKNNGELEK 45 (84)
T ss_pred CceehhhhcCccccEEEEEEEcCCceEEeeeeeeEEeecCCcEEE
Confidence 45444 699999999999999999999999999999988775443
No 145
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=89.00 E-value=0.46 Score=46.17 Aligned_cols=36 Identities=22% Similarity=0.406 Sum_probs=32.9
Q ss_pred eeeecCCCeEEEEEecCCCCcccCCCeEEEEecCCC
Q 024168 230 IPIESDIAGEVIKILRKDGDPIGYGDPLIVILPSFP 265 (271)
Q Consensus 230 ~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~~~ 265 (271)
..|+||++|.|.+..+..|+.|..|++|+.+-|...
T Consensus 209 T~IrAP~dG~V~~~~v~~G~~V~~G~~l~alVp~~~ 244 (352)
T COG1566 209 TVIRAPVDGYVTNLSVRVGQYVSAGTPLMALVPLDS 244 (352)
T ss_pred CEEECCCCceEEeecccCCCeecCCCceEEEecccc
Confidence 479999999999999999999999999999988543
No 146
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=88.85 E-value=0.56 Score=46.33 Aligned_cols=36 Identities=17% Similarity=0.146 Sum_probs=30.9
Q ss_pred eeeeecCCCeEEEEEecCCC-CcccCCCeEEEEecCC
Q 024168 229 EIPIESDIAGEVIKILRKDG-DPIGYGDPLIVILPSF 264 (271)
Q Consensus 229 ~~~V~Ap~~G~V~~Ilv~~G-d~V~~Gq~L~~I~~~~ 264 (271)
...|+||++|+|....+..| +.|..|++|+.|-|..
T Consensus 316 ~~~I~AP~dG~V~~~~~~~G~~~V~~G~~l~~IvP~~ 352 (457)
T TIGR01000 316 KGVIKAPEDGVLHLNPETKGIKYVPKGTLIAQIYPIL 352 (457)
T ss_pred CCEEECCCCeEEEecccCCCCcEeCCCCEEEEEecCC
Confidence 35799999999997778888 6899999999998763
No 147
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=87.63 E-value=0.8 Score=39.30 Aligned_cols=33 Identities=21% Similarity=0.337 Sum_probs=30.1
Q ss_pred eeeecCCCeEEEE-------EecCCCCcccCCCeEEEEec
Q 024168 230 IPIESDIAGEVIK-------ILRKDGDPIGYGDPLIVILP 262 (271)
Q Consensus 230 ~~V~Ap~~G~V~~-------Ilv~~Gd~V~~Gq~L~~I~~ 262 (271)
..|+||..|++.. .+++.||.|+.||+|+.|+.
T Consensus 80 ~~v~sp~~G~~~~~~sP~~~~~v~~Gd~V~~Gq~l~~iEa 119 (155)
T PRK06302 80 HVVTSPMVGTFYRAPSPDAPPFVEVGDTVKEGQTLCIIEA 119 (155)
T ss_pred CEEeCCcCEEEEecCCCCCCcccCCCCEeCCCCEEEEEEe
Confidence 4689999999987 68999999999999999985
No 148
>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion]
Probab=87.42 E-value=0.69 Score=45.36 Aligned_cols=42 Identities=24% Similarity=0.351 Sum_probs=33.0
Q ss_pred CCccCCCCeEecCCeEEEEEecCee--eeeecCCCeEEEEEecCCCC
Q 024168 205 PPSCKEKQTVREGQVLCYIEQLGGE--IPIESDIAGEVIKILRKDGD 249 (271)
Q Consensus 205 ~~~V~~Gd~V~~Gq~l~~IEamK~~--~~V~Ap~~G~V~~Ilv~~Gd 249 (271)
.-.|++||.|++||+|+. .|-. .-+.||++|+|++|...+-.
T Consensus 42 ~mkV~~gD~VkkGq~LfE---dKknpgv~~Tap~sG~V~aI~RG~KR 85 (447)
T COG1726 42 SMKVREGDAVKKGQVLFE---DKKNPGVVFTAPVSGKVTAIHRGEKR 85 (447)
T ss_pred cceeccCCeeeccceeee---cccCCCeEEeccCCceEEEeecccce
Confidence 356999999999999997 3432 34899999999999755443
No 149
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=86.89 E-value=4.9 Score=39.21 Aligned_cols=104 Identities=25% Similarity=0.322 Sum_probs=61.6
Q ss_pred CCCC-HHHHHHHHHHHHhcCCccEEEEEeCCEEEEEEecCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCccccCC
Q 024168 84 LIPD-SSEVESLVTDICNTTSVAEFELKLDGFRLYVTRDIAGDSIPPLPPSSPAPVTVNKPADRPDSNGSVPTSSLAITK 162 (271)
Q Consensus 84 ~~md-~~eI~~Li~~l~~~S~l~eLelk~~~~~L~L~k~~~~~~~~~~p~~~~a~~~~~~~~~ap~~~~~~~~~s~~~~~ 162 (271)
..+| .++|++-|.. +-.+|+=+.++..|.++.++-..... | . . +. ...
T Consensus 140 ~~id~~~~ie~~l~~--~~~~i~WV~i~~~GT~l~I~v~E~~~-----p---~-~---------~~-----------~~~ 188 (385)
T PF06898_consen 140 FKIDSCEEIEKKLRK--QFPDISWVGIEIKGTRLIIEVVEKVD-----P---E-E---------ID-----------KEE 188 (385)
T ss_pred cCCChHHHHHHHHHh--hCCCeEEEEEEEEeeEEEEEEEEcCC-----C---C-c---------cc-----------CCC
Confidence 5567 8999998852 44688888888888888888543211 0 0 0 00 001
Q ss_pred CCCCCCCccccccccCCCCceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEE--EEEecCeeeeeecCCCeEE
Q 024168 163 PVSSSGGIQTLLDKAADEGLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLC--YIEQLGGEIPIESDIAGEV 240 (271)
Q Consensus 163 pa~~~~~~~~~~e~a~~~~~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~--~IEamK~~~~V~Ap~~G~V 240 (271)
| ..|.|-..|.+.+--. -...|.|++||.|++||+|. .|+......+|. ..|.|
T Consensus 189 p-------------------~~lVA~kdGvI~~i~v---~~G~p~Vk~Gd~VkkGdvLISG~i~~~~~~~~v~--A~G~V 244 (385)
T PF06898_consen 189 P-------------------CNLVAKKDGVITSIIV---RSGTPLVKVGDTVKKGDVLISGVIEIEGDEQEVH--ADGDV 244 (385)
T ss_pred C-------------------cceEECCCCEEEEEEe---cCCeEEecCCCEECCCCEEEeeeEcCCCCceEEC--CcEEE
Confidence 1 1234444554433211 23568899999999999984 666554444444 34655
Q ss_pred EE
Q 024168 241 IK 242 (271)
Q Consensus 241 ~~ 242 (271)
..
T Consensus 245 ~a 246 (385)
T PF06898_consen 245 KA 246 (385)
T ss_pred EE
Confidence 53
No 150
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=86.86 E-value=1.1 Score=30.61 Aligned_cols=31 Identities=32% Similarity=0.487 Sum_probs=27.6
Q ss_pred ecCCCeEEEEEecCCCCcccCCCeEEEEecC
Q 024168 233 ESDIAGEVIKILRKDGDPIGYGDPLIVILPS 263 (271)
Q Consensus 233 ~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~ 263 (271)
.++.+|.|..+.+.+|+.|.+|++|+.++..
T Consensus 10 ~~~~~g~i~~~~~~~g~~v~~~~~l~~~~~~ 40 (74)
T cd06849 10 ESMTEGTIVEWLVKEGDSVEEGDVLAEVETD 40 (74)
T ss_pred CCCcEEEEEEEEECCCCEEcCCCEEEEEEeC
Confidence 3678999999999999999999999998643
No 151
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=86.13 E-value=0.89 Score=50.59 Aligned_cols=33 Identities=33% Similarity=0.596 Sum_probs=30.7
Q ss_pred eeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168 230 IPIESDIAGEVIKILRKDGDPIGYGDPLIVILP 262 (271)
Q Consensus 230 ~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~ 262 (271)
..|.||++|+|.+++++.||.|+.||+|+.|+.
T Consensus 1133 ~~v~a~~~G~v~~~~v~~Gd~V~~Gd~l~~iEs 1165 (1201)
T TIGR02712 1133 EQVESEYAGNFWKVLVEVGDRVEAGQPLVILEA 1165 (1201)
T ss_pred cEEeCCceEEEEEEEeCCCCEECCCCEEEEEEe
Confidence 459999999999999999999999999999874
No 152
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=85.14 E-value=1.2 Score=33.93 Aligned_cols=28 Identities=29% Similarity=0.237 Sum_probs=21.1
Q ss_pred CcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecC
Q 024168 188 PKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLG 227 (271)
Q Consensus 188 P~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK 227 (271)
|.+|... +++.||.|++||+||.|-+..
T Consensus 30 ~~vGi~l------------~~k~Gd~V~~Gd~l~~i~~~~ 57 (75)
T PF07831_consen 30 PAVGIEL------------HKKVGDRVEKGDPLATIYAND 57 (75)
T ss_dssp TT-EEEE------------SS-TTSEEBTTSEEEEEEESS
T ss_pred cCcCeEe------------cCcCcCEECCCCeEEEEEcCC
Confidence 5778764 479999999999999987654
No 153
>PRK12999 pyruvate carboxylase; Reviewed
Probab=84.48 E-value=1.2 Score=49.41 Aligned_cols=33 Identities=36% Similarity=0.626 Sum_probs=31.0
Q ss_pred eeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168 230 IPIESDIAGEVIKILRKDGDPIGYGDPLIVILP 262 (271)
Q Consensus 230 ~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~ 262 (271)
..|.||+.|+|.+++++.||.|..||+|+.++.
T Consensus 1077 ~~v~apm~G~v~~i~v~~Gd~V~~G~~L~~lea 1109 (1146)
T PRK12999 1077 GHVGAPMPGSVVTVLVKEGDEVKAGDPLAVIEA 1109 (1146)
T ss_pred ceEeCCceEEEEEEEcCCCCEECCCCEEEEEEc
Confidence 469999999999999999999999999999874
No 154
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=84.02 E-value=13 Score=36.33 Aligned_cols=37 Identities=14% Similarity=0.128 Sum_probs=28.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCccEEEEEeCCEEEEEEecC
Q 024168 84 LIPDSSEVESLVTDICNTTSVAEFELKLDGFRLYVTRDI 122 (271)
Q Consensus 84 ~~md~~eI~~Li~~l~~~S~l~eLelk~~~~~L~L~k~~ 122 (271)
..+|.++|++-|.. +-.+|+=+.++..|.+|.++-..
T Consensus 137 ~~id~~~ie~~l~~--~~~~i~WV~v~i~GTrl~i~v~E 173 (382)
T TIGR02876 137 FSVDVYKLERKLLD--RVPEIMWAGVRVRGTTLVIKVVE 173 (382)
T ss_pred CCCCHHHHHHHHHh--hCCCcEEEEEEEEeEEEEEEEEe
Confidence 45799999997752 45788888888899998887543
No 155
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=82.95 E-value=1.8 Score=39.88 Aligned_cols=36 Identities=25% Similarity=0.407 Sum_probs=31.1
Q ss_pred ceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecC
Q 024168 182 LVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLG 227 (271)
Q Consensus 182 ~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK 227 (271)
...|.||..|++.. ..+++||.|..||+|+.|+...
T Consensus 45 ~~~~~a~~~g~~~~----------~~~~~g~~v~~g~~l~~i~~~~ 80 (371)
T PRK14875 45 TNEVEAPAAGTLRR----------QVAQEGETLPVGALLAVVADAE 80 (371)
T ss_pred eEEEecCCCeEEEE----------EEcCCCCEeCCCCEEEEEecCC
Confidence 46799999999864 5689999999999999998654
No 156
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=82.35 E-value=2.9 Score=36.68 Aligned_cols=26 Identities=19% Similarity=0.215 Sum_probs=21.5
Q ss_pred CCCCCCccCCCCeEecCCeEEEEEec
Q 024168 201 GKRAPPSCKEKQTVREGQVLCYIEQL 226 (271)
Q Consensus 201 ~P~~~~~V~~Gd~V~~Gq~l~~IEam 226 (271)
|..-.++|++||+|++||.|+.+.-.
T Consensus 101 G~gF~~~Vk~Gd~Vk~G~~L~~~D~~ 126 (169)
T PRK09439 101 GEGFKRIAEEGQRVKVGDPIIEFDLP 126 (169)
T ss_pred CCceEEEecCCCEEeCCCEEEEEcHH
Confidence 34567789999999999999998743
No 157
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=82.01 E-value=1.6 Score=43.44 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=25.2
Q ss_pred CCeEEEEEecCCCCcccCCCeEEEEec
Q 024168 236 IAGEVIKILRKDGDPIGYGDPLIVILP 262 (271)
Q Consensus 236 ~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~ 262 (271)
..|+|.+|+++.||.|+.||+|+.|+.
T Consensus 57 ~eg~I~~w~v~~Gd~V~~Gd~L~~vEt 83 (418)
T PTZ00144 57 SEGTVVEWKKKVGDYVKEDEVICIIET 83 (418)
T ss_pred ceEEEEEEEeCCCCEeCCCCEEEEEEE
Confidence 478999999999999999999999985
No 158
>PF02666 PS_Dcarbxylase: Phosphatidylserine decarboxylase; InterPro: IPR003817 Phosphatidylserine decarboxylase plays a pivotal role in the synthesis of phospholipid by the mitochondria. The substrate phosphatidylserine is synthesized extramitochondrially and must be translocated to the mitochondria prior to decarboxylation []. Phosphatidylserine decarboxylases 4.1.1.65 from EC is responsible for conversion of phosphatidylserine to phosphatidylethanolamine and plays a central role in the biosynthesis of aminophospholipids [].; GO: 0004609 phosphatidylserine decarboxylase activity, 0008654 phospholipid biosynthetic process
Probab=81.70 E-value=2.4 Score=37.49 Aligned_cols=63 Identities=21% Similarity=0.289 Sum_probs=46.6
Q ss_pred eEEeCCcCeEEEecccccCCCCCCcc--CCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEE
Q 024168 183 VILESPKVGYFRRSRTIKGKRAPPSC--KEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLI 258 (271)
Q Consensus 183 ~~V~sP~vG~f~~~~s~~~P~~~~~V--~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~ 258 (271)
..|-+-.+|.+.. ++ ++|+.|++||.++.++= .-...+--|.+ .+.++.++.|+.|.+|+.|.
T Consensus 137 v~Vga~~v~~I~~-----------~~~~~~g~~v~kG~e~G~f~f-GStvvl~f~~~-~~~~~~v~~g~~V~~Ge~i~ 201 (202)
T PF02666_consen 137 VQVGALLVGSIVL-----------TVDPKEGDEVKKGEELGYFRF-GSTVVLLFPKD-KIFEWSVKPGQKVRAGETIG 201 (202)
T ss_pred EEeccceeceeEE-----------EecccCCCEEecCcEeCEEec-CCeEEEEEeCC-CccccccCCCCEEEeeeEEe
Confidence 4566677777654 23 68999999999999995 44444444432 33389999999999999886
No 159
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=81.65 E-value=2.4 Score=30.72 Aligned_cols=27 Identities=41% Similarity=0.489 Sum_probs=24.5
Q ss_pred CCeEEEEEecCCCCcccCCCeEEEEec
Q 024168 236 IAGEVIKILRKDGDPIGYGDPLIVILP 262 (271)
Q Consensus 236 ~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~ 262 (271)
.+|.+.+++++.|+.|..|++|+.++.
T Consensus 12 ~~g~~~~~~v~~G~~v~~g~~l~~ie~ 38 (73)
T cd06663 12 GDGTVVKWLKKVGDKVKKGDVLAEIEA 38 (73)
T ss_pred cCEEEEEEEcCCcCEECCCCEEEEEEe
Confidence 378999999999999999999998864
No 160
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=81.06 E-value=2.5 Score=43.86 Aligned_cols=60 Identities=18% Similarity=0.268 Sum_probs=38.5
Q ss_pred CCCCCCccCCCCeEecCCeEEEEEecCeee-------eeecCCCeEEEEEecCCCCcccCCCeEEEE
Q 024168 201 GKRAPPSCKEKQTVREGQVLCYIEQLGGEI-------PIESDIAGEVIKILRKDGDPIGYGDPLIVI 260 (271)
Q Consensus 201 ~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~-------~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I 260 (271)
|..-+.+|++||+|++||.|+..+-..+.. +|.-.-......+....+..|..|++++.+
T Consensus 543 g~gF~~~v~~g~~V~~G~~l~~~d~~~i~~~~~~~~~~vvv~n~~~~~~~~~~~~~~~~~~~~~~~~ 609 (610)
T TIGR01995 543 GEGFEILVKVGDHVKAGQLLLTFDLDKIKEAGYDPTTPVVVTNTKDFLDVIPTDKETVTAGDVLLRL 609 (610)
T ss_pred CCCeEEEecCcCEEcCCCEEEEecHHHHHhcCCCCeeEEEEEccccccceeeccCCcccCCCeeEEe
Confidence 345577899999999999999988444322 222111222233444455678889988865
No 161
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=79.47 E-value=2.1 Score=43.14 Aligned_cols=27 Identities=19% Similarity=0.373 Sum_probs=25.1
Q ss_pred CCeEEEEEecCCCCcccCCCeEEEEec
Q 024168 236 IAGEVIKILRKDGDPIGYGDPLIVILP 262 (271)
Q Consensus 236 ~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~ 262 (271)
..|+|.+++++.||.|+.||+|+.|+.
T Consensus 104 ~eG~I~~w~v~~GD~V~~Gq~L~~VEt 130 (463)
T PLN02226 104 TDGTLATFLKKPGERVQADEAIAQIET 130 (463)
T ss_pred ceEEEEEEEeCCCCEecCCCEEEEEEe
Confidence 478999999999999999999999985
No 162
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=78.88 E-value=3.5 Score=43.02 Aligned_cols=61 Identities=18% Similarity=0.296 Sum_probs=37.9
Q ss_pred CCCCCCccCCCCeEecCCeEEEEEecCee-------eeeecCCCeEEEEEecCCCCcccCCCeEEEEe
Q 024168 201 GKRAPPSCKEKQTVREGQVLCYIEQLGGE-------IPIESDIAGEVIKILRKDGDPIGYGDPLIVIL 261 (271)
Q Consensus 201 ~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~-------~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~ 261 (271)
|..-+.+|++||+|++||.|+..+-..+. .+|--.-......+....+..|..|++|+.+-
T Consensus 559 G~gF~~~v~~Gd~V~~G~~l~~~D~~~i~~~g~~~~~~vvvtn~~~~~~~~~~~~~~v~~~~~~~~~~ 626 (627)
T PRK09824 559 GKFFTAHVNVGDKVNTGDLLIEFDIPAIREAGYDLTTPVLISNSDDYTDVLPHATAQVSAGEPLLSII 626 (627)
T ss_pred CCCceEEecCCCEEcCCCEEEEEcHHHHHhcCCCCeEEEEEEccccccceeeccCCcccCCCeEEEee
Confidence 34557889999999999999998743332 22211111222223334455688999888763
No 163
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=77.74 E-value=2.8 Score=45.21 Aligned_cols=69 Identities=26% Similarity=0.253 Sum_probs=49.0
Q ss_pred CceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCe-eeeeecCCCeEEEEEecCCCCcccCCCeEEE
Q 024168 181 GLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGG-EIPIESDIAGEVIKILRKDGDPIGYGDPLIV 259 (271)
Q Consensus 181 ~~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~-~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~ 259 (271)
+...|.--+.|.-+ .+.+-|....-.++..-.+... -..|-||+.|+|+++.|+.|+.|..||+|+.
T Consensus 1042 G~r~v~felNGq~R------------~i~v~Drs~~~~~~~r~KAd~~Np~higApmpG~Vv~v~V~~G~~Vk~Gd~l~~ 1109 (1149)
T COG1038 1042 GMRTVYFELNGQPR------------EIKVKDRSVGSSVVARRKADPGNPGHIGAPMPGVVVEVKVKKGDKVKKGDVLAV 1109 (1149)
T ss_pred CcEEEEEEeCCcee------------eeeecccccccccccccccCCCCccccCCCCCCceEEEEEccCCeecCCCeeee
Confidence 44555555555443 3555555555555555555443 2359999999999999999999999999998
Q ss_pred Ee
Q 024168 260 IL 261 (271)
Q Consensus 260 I~ 261 (271)
++
T Consensus 1110 ie 1111 (1149)
T COG1038 1110 IE 1111 (1149)
T ss_pred hh
Confidence 76
No 164
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=77.01 E-value=2.2 Score=43.79 Aligned_cols=30 Identities=33% Similarity=0.595 Sum_probs=28.2
Q ss_pred eecCCCeEEEEEecCCCCcccCCCeEEEEe
Q 024168 232 IESDIAGEVIKILRKDGDPIGYGDPLIVIL 261 (271)
Q Consensus 232 V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~ 261 (271)
+.||..|.|++++|+.||.|..||.|+.+.
T Consensus 604 ~~aPMpG~Iekv~Vkpgd~V~~Gq~l~Vl~ 633 (670)
T KOG0238|consen 604 IVAPMPGIIEKVLVKPGDKVKEGQELVVLI 633 (670)
T ss_pred eecCCCCeeeeeeccchhhhcccCceEEEE
Confidence 789999999999999999999999988775
No 165
>PRK03934 phosphatidylserine decarboxylase; Provisional
Probab=76.88 E-value=4.3 Score=37.75 Aligned_cols=76 Identities=20% Similarity=0.237 Sum_probs=49.4
Q ss_pred ceEEeCCcCeEEEecccc------cCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCC
Q 024168 182 LVILESPKVGYFRRSRTI------KGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGD 255 (271)
Q Consensus 182 ~~~V~sP~vG~f~~~~s~------~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq 255 (271)
+..|-|-+||.+...-.+ ++.....++..|+.|++||.+|.++=. -...+--|.+ . .++.++.|+.|..||
T Consensus 184 ~v~VgA~~Vg~I~~~~~~~~~~~~~~r~i~~~~~~~~~v~kGee~G~F~fG-STVvllf~~~-~-~~~~v~~g~~V~~Ge 260 (265)
T PRK03934 184 FVFVGALNVGKMRFNFDERIQTNAKARFIQTYEYENLKLKKGEELGNFEMG-STIVLFSQKG-S-LEFNLKAGKSVKFGE 260 (265)
T ss_pred EEEEeeEEeeEEEEEeccccccCcccCceeeeccCCceEccccEeeEEccC-CEEEEEEeCC-c-ceEccCCCCEEEcch
Confidence 356677778877532110 001122344569999999999999964 4444444533 3 367799999999999
Q ss_pred eEEEE
Q 024168 256 PLIVI 260 (271)
Q Consensus 256 ~L~~I 260 (271)
.|..|
T Consensus 261 ~ig~~ 265 (265)
T PRK03934 261 SIGEI 265 (265)
T ss_pred hhccC
Confidence 98653
No 166
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=76.24 E-value=4.6 Score=35.17 Aligned_cols=61 Identities=20% Similarity=0.215 Sum_probs=35.8
Q ss_pred CCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEE--------EEecCCCCcccCCCeEEEEe
Q 024168 201 GKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVI--------KILRKDGDPIGYGDPLIVIL 261 (271)
Q Consensus 201 ~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~--------~Ilv~~Gd~V~~Gq~L~~I~ 261 (271)
|..-+.+|++||.|++||.|+...-..+..--++...=+|. -+....+-.|..|+.|+.+.
T Consensus 86 GegF~~~v~~Gd~Vk~Gd~Li~fDl~~Ik~~~~s~itpvVvtN~~~~~~~~~~~~~~~v~~g~~~~~~~ 154 (156)
T COG2190 86 GEGFESLVKEGDKVKAGDPLLEFDLDLIKAKGYSTITPVVVTNMDDFKKIVKLSGGGEVKAGETLLLVI 154 (156)
T ss_pred CcceEEEeeCCCEEccCCEEEEECHHHHhhcCCCceeeEEEEcchheeeeEeeccCcceecCCeeEEEe
Confidence 34556789999999999999988744433322222221111 11223333677788777653
No 167
>COG4072 Uncharacterized protein conserved in archaea [Function unknown]
Probab=75.64 E-value=7.5 Score=33.46 Aligned_cols=54 Identities=26% Similarity=0.428 Sum_probs=44.0
Q ss_pred CceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeee-eecCCCeEEEEEe
Q 024168 181 GLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIP-IESDIAGEVIKIL 244 (271)
Q Consensus 181 ~~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~-V~Ap~~G~V~~Il 244 (271)
|.....-|.-|-+.. +.+.+|+.|.+|+.++-+.+-|...- |++|++|+|+-|.
T Consensus 90 Gd~ll~iPvEGYvVt----------pIaDvG~RvrkGd~~AAvttRkG~vryv~~P~~g~Vvyi~ 144 (161)
T COG4072 90 GDELLLIPVEGYVVT----------PIADVGNRVRKGDPFAAVTTRKGEVRYVKPPVPGTVVYID 144 (161)
T ss_pred CCEEEEEecCcEEEE----------EeecccchhcCCCceeEEEecccceEEecCCCCcEEEEEe
Confidence 345566677786643 56899999999999999999998764 8999999999875
No 168
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=75.60 E-value=2.3 Score=45.11 Aligned_cols=31 Identities=35% Similarity=0.583 Sum_probs=29.0
Q ss_pred eeecCCCeEEEEEecCCCCcccCCCeEEEEe
Q 024168 231 PIESDIAGEVIKILRKDGDPIGYGDPLIVIL 261 (271)
Q Consensus 231 ~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~ 261 (271)
.|-||..|+|++|.|+.|+.|..||+|+.+.
T Consensus 1108 ~igAPMpG~vieikvk~G~kV~Kgqpl~VLS 1138 (1176)
T KOG0369|consen 1108 HIGAPMPGTVIEIKVKEGAKVKKGQPLAVLS 1138 (1176)
T ss_pred cccCCCCCceEEEEEecCceecCCCceEeee
Confidence 5889999999999999999999999999765
No 169
>PRK02597 rpoC2 DNA-directed RNA polymerase subunit beta'; Provisional
Probab=75.31 E-value=6.6 Score=44.33 Aligned_cols=60 Identities=25% Similarity=0.272 Sum_probs=48.3
Q ss_pred CCCCCccCCCCeEecCCeEEEEEecC-------eeeeeecCCCeEEE---------------------------------
Q 024168 202 KRAPPSCKEKQTVREGQVLCYIEQLG-------GEIPIESDIAGEVI--------------------------------- 241 (271)
Q Consensus 202 P~~~~~V~~Gd~V~~Gq~l~~IEamK-------~~~~V~Ap~~G~V~--------------------------------- 241 (271)
+..-.||+.|+.|+.+|+|+.+-+.. ....|+|+.+|+|.
T Consensus 401 ~~s~l~v~~~q~v~~~q~iae~~~~~~~~~~e~~~K~IySdlsGEI~fst~V~h~~rtrhGNva~ll~ktGhLWILSG~v 480 (1331)
T PRK02597 401 QGSLLFVDDGQTVEADQLLAEVAAGAVKKSTEKATKDVICDLAGEVRFADLIPEEKTDRQGNTTRKAQRGGLLWVLSGDV 480 (1331)
T ss_pred CCCEEEEECCcEEecCcEEEEeecCCcccceeEEEEEEecCCceEEEECCCccccccccCCceeEEeccCcEEEEEeCCe
Confidence 34556899999999999999999853 44589999999875
Q ss_pred -------EEecCCCCcccCCCeEEEEe
Q 024168 242 -------KILRKDGDPIGYGDPLIVIL 261 (271)
Q Consensus 242 -------~Ilv~~Gd~V~~Gq~L~~I~ 261 (271)
.++++|||.|..++.|++.+
T Consensus 481 ynlp~~S~LfvKdqDqV~~~sVLAEtk 507 (1331)
T PRK02597 481 YNLPPGAEPVVSNGDRVEEGDVLAETK 507 (1331)
T ss_pred EeeCCCceEEEeCCCEEccCceEEEEe
Confidence 23678888888888888665
No 170
>PRK14844 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Provisional
Probab=75.28 E-value=3.7 Score=49.12 Aligned_cols=36 Identities=22% Similarity=0.314 Sum_probs=25.9
Q ss_pred CCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEE
Q 024168 203 RAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEV 240 (271)
Q Consensus 203 ~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V 240 (271)
++..+|+.|+.|++||+||.-... ..+|-++++|+|
T Consensus 2421 ga~l~v~~g~~V~~g~~la~wdp~--~~piisE~~G~v 2456 (2836)
T PRK14844 2421 GAKLYVDEGGSVKIGDKVAEWDPY--TLPIITEKTGTV 2456 (2836)
T ss_pred ccEEEecCCCEecCCCEEEEEcCC--CcceEeecceEE
Confidence 456789999999999999987533 345555555544
No 171
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=72.90 E-value=2.4 Score=35.21 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=21.2
Q ss_pred CCCCCCccCCCCeEecCCeEEEEEe
Q 024168 201 GKRAPPSCKEKQTVREGQVLCYIEQ 225 (271)
Q Consensus 201 ~P~~~~~V~~Gd~V~~Gq~l~~IEa 225 (271)
|..-+++|++||+|++||.|+.+.-
T Consensus 79 G~gF~~~v~~Gd~V~~G~~l~~~D~ 103 (121)
T TIGR00830 79 GEGFTSHVEEGQRVKKGDPLLEFDL 103 (121)
T ss_pred CCceEEEecCCCEEcCCCEEEEEcH
Confidence 3456788999999999999999873
No 172
>PRK11637 AmiB activator; Provisional
Probab=70.31 E-value=10 Score=37.17 Aligned_cols=21 Identities=19% Similarity=0.270 Sum_probs=13.6
Q ss_pred CCccCCCCeEecCCeEEEEEe
Q 024168 205 PPSCKEKQTVREGQVLCYIEQ 225 (271)
Q Consensus 205 ~~~V~~Gd~V~~Gq~l~~IEa 225 (271)
..+|++||.|++||+||.+-.
T Consensus 380 ~~~v~~G~~V~~G~~ig~~g~ 400 (428)
T PRK11637 380 SALVSVGAQVRAGQPIALVGS 400 (428)
T ss_pred cCCCCCcCEECCCCeEEeecC
Confidence 355667777777777776643
No 173
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=70.18 E-value=7.8 Score=40.70 Aligned_cols=46 Identities=24% Similarity=0.194 Sum_probs=33.3
Q ss_pred eEEeCCcCeEEEecc-c------------------------ccCCCCCCccCCCCeEecCCeEEEEEecCe
Q 024168 183 VILESPKVGYFRRSR-T------------------------IKGKRAPPSCKEKQTVREGQVLCYIEQLGG 228 (271)
Q Consensus 183 ~~V~sP~vG~f~~~~-s------------------------~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~ 228 (271)
..|.||..|++..-. + .+|..-+.+|++||+|++||.|+..+-..+
T Consensus 536 ~~v~AP~~G~v~~v~~T~HA~gi~t~~G~eiLIHiGidTV~l~G~gF~~~Vk~Gd~V~~G~~l~~~D~~~i 606 (648)
T PRK10255 536 KIVVSPAAGTIVKIFNTNHAFCLETEKGAEIVVHMGIDTVALEGKGFKRLVEEGAQVSAGQPILEMDLDYL 606 (648)
T ss_pred CeEEecCCeEEEEEcCCCcEEEEEcCCCCEEEEEeccchhccCCCCceEEecCCCEEcCCCEEEEEcHHHH
Confidence 479999999764422 1 123445677999999999999999874433
No 174
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=69.98 E-value=7.8 Score=36.07 Aligned_cols=38 Identities=24% Similarity=0.278 Sum_probs=31.9
Q ss_pred CeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEecCCC
Q 024168 227 GGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPSFP 265 (271)
Q Consensus 227 K~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~~~ 265 (271)
+....|+||.+|.+.- .++.||.|..||+|++|...+.
T Consensus 217 ~~~~~v~A~~~G~~~~-~~~~Gd~V~~G~~ig~i~d~~~ 254 (287)
T cd06251 217 RSSVWVRAPQGGLLRS-LVKLGDKVKKGQLLATITDPFG 254 (287)
T ss_pred cCCeEEecCCCeEEEE-ecCCCCEECCCCEEEEEECCCC
Confidence 3336799999999875 8999999999999999976554
No 175
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=69.94 E-value=3.2 Score=34.64 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=21.3
Q ss_pred CCCCCCccCCCCeEecCCeEEEEEe
Q 024168 201 GKRAPPSCKEKQTVREGQVLCYIEQ 225 (271)
Q Consensus 201 ~P~~~~~V~~Gd~V~~Gq~l~~IEa 225 (271)
|..-+++|++||.|++||.|+.+.-
T Consensus 79 g~gF~~~vk~Gd~V~~G~~l~~~D~ 103 (124)
T cd00210 79 GEGFTSHVEEGQRVKQGDKLLEFDL 103 (124)
T ss_pred CCceEEEecCCCEEcCCCEEEEEcH
Confidence 3556788999999999999998873
No 176
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=68.98 E-value=5 Score=39.54 Aligned_cols=39 Identities=28% Similarity=0.414 Sum_probs=33.2
Q ss_pred CCCceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecC
Q 024168 179 DEGLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLG 227 (271)
Q Consensus 179 ~~~~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK 227 (271)
+.-..+|.||..|++. +.++++||.|..|++|++|+...
T Consensus 42 DKa~~EV~ap~~G~l~----------~i~~~~G~~V~Vg~~I~~i~~~~ 80 (404)
T COG0508 42 DKATMEVPAPDAGVLA----------KILVEEGDTVPVGAVIARIEEEG 80 (404)
T ss_pred CceeEEecCCCCeEEE----------EEeccCCCEEcCCCeEEEEecCC
Confidence 3445789999999985 46899999999999999999764
No 177
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=68.97 E-value=6.8 Score=38.66 Aligned_cols=39 Identities=28% Similarity=0.365 Sum_probs=32.4
Q ss_pred CCCceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecC
Q 024168 179 DEGLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLG 227 (271)
Q Consensus 179 ~~~~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK 227 (271)
+.-...|.||..|++.. .++++||.|..|++|++|+...
T Consensus 42 dK~~~ei~a~~~G~v~~----------i~v~~G~~V~~G~~l~~i~~~~ 80 (407)
T PRK05704 42 DKVVLEVPAPAAGVLSE----------ILAEEGDTVTVGQVLGRIDEGA 80 (407)
T ss_pred cCceeEEecCCCEEEEE----------EEeCCCCEeCCCCEEEEEecCC
Confidence 33457899999999853 6799999999999999998654
No 178
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=68.64 E-value=6.9 Score=44.81 Aligned_cols=52 Identities=19% Similarity=0.351 Sum_probs=46.9
Q ss_pred CCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEe
Q 024168 210 EKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVIL 261 (271)
Q Consensus 210 ~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~ 261 (271)
.|-.+.-|--.|.+|...--.-++||..|.+++.+|+||+-|+.||+-++|+
T Consensus 666 ~~~rltIdn~t~~fe~enDpt~LrsPs~GKLl~ylVedG~hv~~Gq~YAeiE 717 (2196)
T KOG0368|consen 666 DGYRLTIDNNTCLFEKENDPTVLRSPSPGKLLQYLVEDGEHVEAGQPYAEIE 717 (2196)
T ss_pred ceEEEEECCeEEEEecCCCcceecCCCCccceEEEecCCCceecCCeeeehe
Confidence 4777888889999998777778999999999999999999999999988876
No 179
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=67.85 E-value=3.2 Score=34.98 Aligned_cols=28 Identities=25% Similarity=0.195 Sum_probs=20.6
Q ss_pred CCCCCCccCCCCeEecCCeEEEEEecCe
Q 024168 201 GKRAPPSCKEKQTVREGQVLCYIEQLGG 228 (271)
Q Consensus 201 ~P~~~~~V~~Gd~V~~Gq~l~~IEamK~ 228 (271)
|.+-.++|++||.|++||.|+.+.-..+
T Consensus 83 G~gF~~~v~~G~~V~~G~~L~~~D~~~i 110 (132)
T PF00358_consen 83 GEGFETLVKEGDKVKAGQPLIEFDLEKI 110 (132)
T ss_dssp TTTEEESS-TTSEE-TTEEEEEE-HHHH
T ss_pred CcceEEEEeCCCEEECCCEEEEEcHHHH
Confidence 4566789999999999999999875544
No 180
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=65.76 E-value=7.4 Score=37.97 Aligned_cols=34 Identities=26% Similarity=0.336 Sum_probs=28.0
Q ss_pred cCeeeeeecCCCeEEEEEe-------cCCCCcccCCCeEEE
Q 024168 226 LGGEIPIESDIAGEVIKIL-------RKDGDPIGYGDPLIV 259 (271)
Q Consensus 226 mK~~~~V~Ap~~G~V~~Il-------v~~Gd~V~~Gq~L~~ 259 (271)
+...-.|.|..+|+|+++. |+.||.|..||.|+.
T Consensus 186 ~~~p~~lVA~kdGvI~~i~v~~G~p~Vk~Gd~VkkGdvLIS 226 (385)
T PF06898_consen 186 KEEPCNLVAKKDGVITSIIVRSGTPLVKVGDTVKKGDVLIS 226 (385)
T ss_pred CCCCcceEECCCCEEEEEEecCCeEEecCCCEECCCCEEEe
Confidence 4444679999999999995 777888999999984
No 181
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=64.88 E-value=9 Score=37.80 Aligned_cols=37 Identities=32% Similarity=0.396 Sum_probs=31.6
Q ss_pred CCceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEec
Q 024168 180 EGLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQL 226 (271)
Q Consensus 180 ~~~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEam 226 (271)
.-...|.||..|++.. .++++|+.|..|++|++|+..
T Consensus 41 K~~~ei~a~~~G~v~~----------i~~~eG~~v~vG~~l~~i~~~ 77 (403)
T TIGR01347 41 KVVLEVPSPADGVLQE----------ILFKEGDTVESGQVLAILEEG 77 (403)
T ss_pred ceeeEEecCCCEEEEE----------EEeCCCCEeCCCCEEEEEecC
Confidence 3357899999999863 578999999999999999864
No 182
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=64.79 E-value=7.9 Score=36.24 Aligned_cols=34 Identities=21% Similarity=0.242 Sum_probs=30.1
Q ss_pred CeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEe
Q 024168 227 GGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVIL 261 (271)
Q Consensus 227 K~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~ 261 (271)
....-|+||.+|.+.. .++-||.|+.||.|..|.
T Consensus 162 ~~Er~IrAp~~Gi~~~-~~~IGd~V~KGqvLa~I~ 195 (256)
T TIGR03309 162 THERVLRAPADGIVTP-TKAIGDSVKKGDVIATVG 195 (256)
T ss_pred cceEEEECCCCeEEee-ccCCCCEEeCCCEEEEEc
Confidence 4456799999999987 899999999999999885
No 183
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=64.71 E-value=7.9 Score=29.36 Aligned_cols=26 Identities=35% Similarity=0.546 Sum_probs=21.2
Q ss_pred EEEecCCCCcccCCCeEEEEecCCCC
Q 024168 241 IKILRKDGDPIGYGDPLIVILPSFPG 266 (271)
Q Consensus 241 ~~Ilv~~Gd~V~~Gq~L~~I~~~~~~ 266 (271)
..++++-||.|+.|+||++|-..++.
T Consensus 34 i~l~~k~Gd~V~~Gd~l~~i~~~~~~ 59 (75)
T PF07831_consen 34 IELHKKVGDRVEKGDPLATIYANDEA 59 (75)
T ss_dssp EEESS-TTSEEBTTSEEEEEEESSSS
T ss_pred eEecCcCcCEECCCCeEEEEEcCChH
Confidence 35788999999999999999876654
No 184
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=63.79 E-value=5 Score=39.58 Aligned_cols=36 Identities=31% Similarity=0.278 Sum_probs=31.1
Q ss_pred CceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEec
Q 024168 181 GLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQL 226 (271)
Q Consensus 181 ~~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEam 226 (271)
-...|.||..|++. +.+|++||.|+.||-|+.|+..
T Consensus 114 ~tv~V~sP~sGvi~----------e~lvk~gdtV~~g~~la~i~~g 149 (457)
T KOG0559|consen 114 TTVEVPSPASGVIT----------ELLVKDGDTVTPGQKLAKISPG 149 (457)
T ss_pred eeeeccCCCcceee----------EEecCCCCcccCCceeEEecCC
Confidence 34689999999985 4689999999999999999854
No 185
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=63.55 E-value=7.5 Score=34.93 Aligned_cols=33 Identities=24% Similarity=0.318 Sum_probs=27.1
Q ss_pred eEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEe
Q 024168 183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQ 225 (271)
Q Consensus 183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEa 225 (271)
..|.++..|.+. ..+|++||.|++||+|..++.
T Consensus 67 ~~v~~~~~G~v~----------~i~v~~G~~Vk~Gq~L~~ld~ 99 (372)
T COG0845 67 VEVLARVAGIVA----------EILVKEGDRVKKGQLLARLDP 99 (372)
T ss_pred eeEecccccEEE----------EEEccCCCeecCCCEEEEECC
Confidence 357777777764 467999999999999999986
No 186
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=63.46 E-value=9.1 Score=34.06 Aligned_cols=32 Identities=25% Similarity=0.248 Sum_probs=26.7
Q ss_pred eEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEE
Q 024168 183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIE 224 (271)
Q Consensus 183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IE 224 (271)
..|+||+.|.+.. .++.+|+.|..|++|+.|-
T Consensus 89 ~~i~AP~dG~V~~----------~~~~~G~~v~~g~~l~~i~ 120 (265)
T TIGR00999 89 VEVRSPFDGYITQ----------KSVTLGDYVAPQAELFRVA 120 (265)
T ss_pred EEEECCCCeEEEE----------EEcCCCCEeCCCCceEEEE
Confidence 4689999999864 3578999999999998764
No 187
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=62.39 E-value=8 Score=39.77 Aligned_cols=28 Identities=25% Similarity=0.515 Sum_probs=25.4
Q ss_pred CCeEEEEEecCCCCcccCCCeEEEEecC
Q 024168 236 IAGEVIKILRKDGDPIGYGDPLIVILPS 263 (271)
Q Consensus 236 ~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~ 263 (271)
..|+|.+++++.||.|+.|++|+.|+.+
T Consensus 125 ~eg~I~~W~vkeGD~V~~g~~l~eVETD 152 (539)
T PLN02744 125 TEGNIARWLKKEGDKVSPGEVLCEVETD 152 (539)
T ss_pred ceeEEEEEEecCCCEecCCCeeEEEeec
Confidence 4699999999999999999999999753
No 188
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=62.06 E-value=19 Score=37.46 Aligned_cols=54 Identities=22% Similarity=0.391 Sum_probs=36.6
Q ss_pred CccCCCCeEecCCeEEEEEec-----CeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEecC
Q 024168 206 PSCKEKQTVREGQVLCYIEQL-----GGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPS 263 (271)
Q Consensus 206 ~~V~~Gd~V~~Gq~l~~IEam-----K~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~ 263 (271)
|.+++||.|..||+++.+.-. |+| |...+.|+|++|. .+|+. ...+++++++..
T Consensus 122 p~~k~gd~v~~gdi~g~v~e~~~~~h~im--vp~~~~g~~~~i~-~~G~y-tv~~~i~~~~~~ 180 (586)
T PRK04192 122 PTVKVGDKVEAGDILGTVQETPSIEHKIM--VPPGVSGTVKEIV-SEGDY-TVDDTIAVLEDE 180 (586)
T ss_pred cccccCCEecCCceEEEEecCCceeeeee--cCCCCceEEEEEc-cCCCc-eeeeEEEEEEcc
Confidence 569999999999999997754 333 3455589998873 34442 234566666543
No 189
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=62.00 E-value=7.9 Score=37.86 Aligned_cols=31 Identities=29% Similarity=0.389 Sum_probs=26.2
Q ss_pred eeeeecCCCeEEEEEe-------cCCCCcccCCCeEEE
Q 024168 229 EIPIESDIAGEVIKIL-------RKDGDPIGYGDPLIV 259 (271)
Q Consensus 229 ~~~V~Ap~~G~V~~Il-------v~~Gd~V~~Gq~L~~ 259 (271)
...|.|..+|+|+++. |+.||.|..||.|+-
T Consensus 186 P~~lVA~kdGvI~~i~v~~G~p~Vk~GD~VkkGqvLIs 223 (382)
T TIGR02876 186 PRNIVAKKDGVIKRVYVTSGEPVVKKGDVVKKGDLLIS 223 (382)
T ss_pred CccEEECCCCEEEEEEEcCCeEEEccCCEEcCCCEEEE
Confidence 4578999999999995 677888999999983
No 190
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....
Probab=61.96 E-value=6.2 Score=30.37 Aligned_cols=21 Identities=29% Similarity=0.276 Sum_probs=17.0
Q ss_pred CCccCCCCeEecCCeEEEEEe
Q 024168 205 PPSCKEKQTVREGQVLCYIEQ 225 (271)
Q Consensus 205 ~~~V~~Gd~V~~Gq~l~~IEa 225 (271)
+|+++.|+.|++|++|+.++.
T Consensus 48 ~~~~~dG~~v~~g~~i~~i~G 68 (88)
T PF02749_consen 48 EWLVKDGDRVEPGDVILEIEG 68 (88)
T ss_dssp EESS-TT-EEETTCEEEEEEE
T ss_pred EEEeCCCCCccCCcEEEEEEe
Confidence 578999999999999999873
No 191
>PRK03140 phosphatidylserine decarboxylase; Provisional
Probab=61.73 E-value=10 Score=35.09 Aligned_cols=64 Identities=16% Similarity=0.149 Sum_probs=44.0
Q ss_pred eEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEE
Q 024168 183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIV 259 (271)
Q Consensus 183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~ 259 (271)
..|-+-++|.+. ++..|+.|++||.++.++=. -...+--|.+-.--...+..|+.|..|+.|..
T Consensus 194 v~Vga~~Vg~I~------------~~~~g~~v~kGee~G~F~fG-Stvvllf~~~~~~~~~~~~~g~~V~~Ge~ig~ 257 (259)
T PRK03140 194 VKVGAMFVNSIE------------LTHERDTVQKGEEMAYFSFG-STVVLLFEKDMIEPDQELKSGQEVRLGEKIGT 257 (259)
T ss_pred EEEeeEEeeEEE------------EecCCCEEecCcEeeeeccC-CeEEEEEeCCccccchhhcCCCEEEcChhhcc
Confidence 445555666654 23569999999999999966 44545555432222456788999999998864
No 192
>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....
Probab=61.72 E-value=5.9 Score=30.25 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=17.8
Q ss_pred CCCccCCCCeEecCCeEEEEEecC
Q 024168 204 APPSCKEKQTVREGQVLCYIEQLG 227 (271)
Q Consensus 204 ~~~~V~~Gd~V~~Gq~l~~IEamK 227 (271)
.+..|++||.|++||.|+.+....
T Consensus 53 ~~~~v~~G~~V~~G~~IG~~g~~~ 76 (96)
T PF01551_consen 53 DSVSVKVGDRVKAGQVIGTVGNTG 76 (96)
T ss_dssp SEESS-TTSEE-TTCEEEEEBSCS
T ss_pred ccccceecccccCCCEEEecCCCC
Confidence 345699999999999999988543
No 193
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=60.62 E-value=20 Score=35.22 Aligned_cols=54 Identities=24% Similarity=0.283 Sum_probs=35.4
Q ss_pred CccCCCCeEecCCeEEEEEecC-eeeee--ecCCCeEEEEEecCCCCcccCCCeEEEEe
Q 024168 206 PSCKEKQTVREGQVLCYIEQLG-GEIPI--ESDIAGEVIKILRKDGDPIGYGDPLIVIL 261 (271)
Q Consensus 206 ~~V~~Gd~V~~Gq~l~~IEamK-~~~~V--~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~ 261 (271)
|.+++||.|..||+++.+.-.. ..+.| ...+.|+|+.|. .+|+- ...+.+++++
T Consensus 53 p~~k~gd~v~~gd~~g~v~e~~~~~h~imvp~~~~g~~~~~~-~~g~~-~~~~~~~~~~ 109 (369)
T cd01134 53 PLVKVGDHVTGGDILGTVPENSLIEHKIMVPPRVRGTVTYIA-PAGDY-TVDDVILEVE 109 (369)
T ss_pred eccccCCCccCCCEEEEEecCCceeeEEeCCCCCCeEEEEEe-cCCCe-eEEEEEEEEE
Confidence 4589999999999999887333 33333 344699999864 34541 2235555555
No 194
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=59.79 E-value=14 Score=36.60 Aligned_cols=38 Identities=16% Similarity=0.106 Sum_probs=31.5
Q ss_pred CCceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecC
Q 024168 180 EGLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLG 227 (271)
Q Consensus 180 ~~~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK 227 (271)
.....+.||..|++. ++++++|+.|..|++|+.|+..+
T Consensus 39 K~~~ev~a~~~G~v~----------~i~v~~G~~v~vG~~l~~i~~~~ 76 (416)
T PLN02528 39 KATIEITSRYKGKVA----------QINFSPGDIVKVGETLLKIMVED 76 (416)
T ss_pred ceeEEEecCCCEEEE----------EEEeCCCCEeCCCCEEEEEeccC
Confidence 344789999999985 36799999999999999997543
No 195
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=59.53 E-value=15 Score=37.37 Aligned_cols=45 Identities=31% Similarity=0.275 Sum_probs=36.5
Q ss_pred EEEEecCeeeeeecCCCeEEEEE------------------------ecCCCCcccCCCeEEEEecCCC
Q 024168 221 CYIEQLGGEIPIESDIAGEVIKI------------------------LRKDGDPIGYGDPLIVILPSFP 265 (271)
Q Consensus 221 ~~IEamK~~~~V~Ap~~G~V~~I------------------------lv~~Gd~V~~Gq~L~~I~~~~~ 265 (271)
..+..-+...+|.|+.+|.|..| +++.||.|+.|||||+|..++.
T Consensus 405 ~~~~~~~~~~~v~A~~~G~v~~id~~~i~~~a~~~GAp~d~~aGi~l~~k~Gd~V~~Gd~l~~i~a~~~ 473 (493)
T TIGR02645 405 DDIEAGIYTADIHAETDGYVTEIDNKHITRIARLAGAPNDKGAGVELHVKVGDQVKKGDPLYTIYAESE 473 (493)
T ss_pred cccCCCCeEEEEEcCCCeEEEEeehHHHHHHHHHcCCCcCcCcCeEEeccCCCEecCCCeEEEEECCCH
Confidence 33445667789999999999865 6889999999999999986554
No 196
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=59.44 E-value=14 Score=34.66 Aligned_cols=37 Identities=19% Similarity=0.356 Sum_probs=31.4
Q ss_pred eeeeecCCCeEEEEEecCCCCcccCCCeEEEEecCCCC
Q 024168 229 EIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPSFPG 266 (271)
Q Consensus 229 ~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~~~~ 266 (271)
..-|+||.+|.+.- .++.||.|..||.|.+|...+.|
T Consensus 229 ~~~v~A~~~Gl~~~-~~~~G~~V~~Gq~lg~i~dp~~g 265 (298)
T cd06253 229 VVYVNAETSGIFVP-AKHLGDIVKRGDVIGEIVDPLEG 265 (298)
T ss_pred eEEEEcCCCeEEEE-CcCCCCEECCCCEEEEEeCCCCC
Confidence 45799999997764 47999999999999999876654
No 197
>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....
Probab=58.88 E-value=16 Score=27.83 Aligned_cols=23 Identities=17% Similarity=0.138 Sum_probs=16.9
Q ss_pred EEEEecCCCCcccCCCeEEEEec
Q 024168 240 VIKILRKDGDPIGYGDPLIVILP 262 (271)
Q Consensus 240 V~~Ilv~~Gd~V~~Gq~L~~I~~ 262 (271)
+..+.++.||.|..|+.|..+..
T Consensus 52 l~~~~v~~G~~V~~G~~IG~~g~ 74 (96)
T PF01551_consen 52 LDSVSVKVGDRVKAGQVIGTVGN 74 (96)
T ss_dssp ESEESS-TTSEE-TTCEEEEEBS
T ss_pred cccccceecccccCCCEEEecCC
Confidence 33456889999999999999874
No 198
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=58.75 E-value=17 Score=34.04 Aligned_cols=37 Identities=19% Similarity=0.130 Sum_probs=31.8
Q ss_pred eeeeecCCCeEEEEEecCCCCcccCCCeEEEEecCCCC
Q 024168 229 EIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPSFPG 266 (271)
Q Consensus 229 ~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~~~~ 266 (271)
...|+||.+|.+. -.++.|+.|..||.|.+|...+.+
T Consensus 231 ~~~v~Ap~~Gi~~-~~~~~G~~V~~Gq~lg~I~dp~g~ 267 (293)
T cd06255 231 RDWVAAIHGGLFE-PSVPAGDTIPAGQPLGRVVDLYGA 267 (293)
T ss_pred eEEEecCCCeEEE-EecCCCCEecCCCEEEEEECCCCC
Confidence 5689999999776 668999999999999999876654
No 199
>COG5007 Predicted transcriptional regulator, BolA superfamily [Transcription]
Probab=56.84 E-value=22 Score=27.74 Aligned_cols=32 Identities=31% Similarity=0.439 Sum_probs=27.0
Q ss_pred CCHHHHHHHHHHHHhcCCccEEEEEeCCEEEEEEe
Q 024168 86 PDSSEVESLVTDICNTTSVAEFELKLDGFRLYVTR 120 (271)
Q Consensus 86 md~~eI~~Li~~l~~~S~l~eLelk~~~~~L~L~k 120 (271)
||.++|++||. +.-.+.+++++.+|-++.+--
T Consensus 1 M~~e~Ik~ll~---~~L~~e~v~V~Gdg~Hf~vi~ 32 (80)
T COG5007 1 MDNEEIKSLLE---NALPLEEVEVEGDGSHFQVIA 32 (80)
T ss_pred CCHHHHHHHHH---hcCCccEEEEecCCceEEEEE
Confidence 78999999996 567899999999987776653
No 200
>TIGR00163 PS_decarb phosphatidylserine decarboxylase precursor. Phosphatidylserine decarboxylase is synthesized as a single chain precursor. Generation of the pyruvoyl active site from a Ser is coupled to cleavage of a Gly-Ser bond between the larger (beta) and smaller (alpha chains). It is an integral membrane protein. A closely related family, possibly also active as phosphatidylserine decarboxylase, falls under model TIGR00164.
Probab=55.41 E-value=18 Score=33.05 Aligned_cols=47 Identities=15% Similarity=0.224 Sum_probs=35.4
Q ss_pred CCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEE
Q 024168 211 KQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLI 258 (271)
Q Consensus 211 Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~ 258 (271)
|+.|++||.++.++= .-...+--|.+-.-.+..+..|+.|.+|+.|.
T Consensus 189 g~~v~kGee~G~F~f-GStVvllf~~~~~~~~~~v~~g~kV~~Ge~lg 235 (238)
T TIGR00163 189 PVKLLKGEEMGYFEL-GSTVILLFEADAFQLSAHLAVGQEVKIGELLA 235 (238)
T ss_pred CceeccccEeeeEcC-CCeEEEEEeCCCcccChhhccCCEEEcChhhc
Confidence 999999999999996 44455555543222367788999999999884
No 201
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....
Probab=54.67 E-value=12 Score=28.72 Aligned_cols=25 Identities=36% Similarity=0.490 Sum_probs=19.8
Q ss_pred eEEEEEecCCCCcccCCCeEEEEec
Q 024168 238 GEVIKILRKDGDPIGYGDPLIVILP 262 (271)
Q Consensus 238 G~V~~Ilv~~Gd~V~~Gq~L~~I~~ 262 (271)
|.-.+++++||+.|..|++|++++-
T Consensus 44 ~~~v~~~~~dG~~v~~g~~i~~i~G 68 (88)
T PF02749_consen 44 GLEVEWLVKDGDRVEPGDVILEIEG 68 (88)
T ss_dssp TEEEEESS-TT-EEETTCEEEEEEE
T ss_pred cEEEEEEeCCCCCccCCcEEEEEEe
Confidence 5566799999999999999999873
No 202
>PRK04350 thymidine phosphorylase; Provisional
Probab=54.47 E-value=21 Score=36.34 Aligned_cols=43 Identities=28% Similarity=0.255 Sum_probs=35.6
Q ss_pred EEecCeeeeeecCCCeEEEEE------------------------ecCCCCcccCCCeEEEEecCCC
Q 024168 223 IEQLGGEIPIESDIAGEVIKI------------------------LRKDGDPIGYGDPLIVILPSFP 265 (271)
Q Consensus 223 IEamK~~~~V~Ap~~G~V~~I------------------------lv~~Gd~V~~Gq~L~~I~~~~~ 265 (271)
+-.-+...+|.|+.+|.|..| +++-||.|+.||||++|..++.
T Consensus 399 ~~~a~~~~~v~A~~~G~v~~id~~~ig~~a~~lGap~d~~aGi~l~~k~Gd~V~~G~~l~~i~a~~~ 465 (490)
T PRK04350 399 IPLGDHTHDVTAPRDGYVTAIDNRRLARIARLAGAPKDKGAGIDLHVKVGDKVKKGDPLYTIHAESE 465 (490)
T ss_pred cCCCCeEEEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCCCEecCCCeEEEEecCCH
Confidence 455667789999999999865 6889999999999999985554
No 203
>COG3608 Predicted deacylase [General function prediction only]
Probab=52.33 E-value=17 Score=35.30 Aligned_cols=32 Identities=31% Similarity=0.369 Sum_probs=28.6
Q ss_pred eeecCCCeEEEEEecCCCCcccCCCeEEEEecC
Q 024168 231 PIESDIAGEVIKILRKDGDPIGYGDPLIVILPS 263 (271)
Q Consensus 231 ~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~ 263 (271)
.++||..|.| +.+++-||.|+.||.|+.|.+.
T Consensus 258 ~i~Ap~~G~v-~~~v~lGd~VeaG~~la~i~~~ 289 (331)
T COG3608 258 MIRAPAGGLV-EFLVDLGDKVEAGDVLATIHDP 289 (331)
T ss_pred eeecCCCceE-EEeecCCCcccCCCeEEEEecC
Confidence 5999999966 5889999999999999999875
No 204
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=51.86 E-value=25 Score=34.10 Aligned_cols=36 Identities=25% Similarity=0.252 Sum_probs=30.4
Q ss_pred eeeecCCCeEEEEEecCCCCcccCCCeEEEEecCCCC
Q 024168 230 IPIESDIAGEVIKILRKDGDPIGYGDPLIVILPSFPG 266 (271)
Q Consensus 230 ~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~~~~ 266 (271)
.-|+||.+|.+. -.++-||.|+.||.|.+|...+.+
T Consensus 290 ~~v~Ap~~Gl~~-~~~~~Gd~V~~G~~lg~I~d~~g~ 325 (359)
T cd06250 290 EMLYAPAGGMVV-YRAAPGDWVEAGDVLAEILDPLGD 325 (359)
T ss_pred EEEeCCCCeEEE-EecCCCCEecCCCEEEEEECCCCC
Confidence 459999999877 557999999999999999876653
No 205
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=51.60 E-value=9 Score=35.88 Aligned_cols=30 Identities=33% Similarity=0.503 Sum_probs=26.2
Q ss_pred eecCCCeEEEEEecCCCCcccCCCeEEEEe
Q 024168 232 IESDIAGEVIKILRKDGDPIGYGDPLIVIL 261 (271)
Q Consensus 232 V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~ 261 (271)
+-.++-|..-+++|+.||.|..||+||.=+
T Consensus 32 ~~~Df~g~~Pkm~VkeGD~Vk~Gq~LF~dK 61 (257)
T PF05896_consen 32 LPDDFPGMKPKMLVKEGDRVKAGQPLFEDK 61 (257)
T ss_pred cCcccCCCCccEEeccCCEEeCCCeeEeeC
Confidence 456788888999999999999999999754
No 206
>PRK10871 nlpD lipoprotein NlpD; Provisional
Probab=51.57 E-value=28 Score=33.53 Aligned_cols=22 Identities=9% Similarity=0.276 Sum_probs=17.4
Q ss_pred EEecCCCCcccCCCeEEEEecC
Q 024168 242 KILRKDGDPIGYGDPLIVILPS 263 (271)
Q Consensus 242 ~Ilv~~Gd~V~~Gq~L~~I~~~ 263 (271)
+++|+.||.|..||.|..+...
T Consensus 271 ~i~Vk~Gq~V~~Gq~Ig~~G~t 292 (319)
T PRK10871 271 TMLVREQQEVKAGQKIATMGST 292 (319)
T ss_pred ccccCCcCEECCCCeEEeEcCC
Confidence 4568889999999998887654
No 207
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=51.11 E-value=25 Score=35.92 Aligned_cols=43 Identities=28% Similarity=0.298 Sum_probs=35.0
Q ss_pred EEecCeeeeeecCCCeEEEEE------------------------ecCCCCcccCCCeEEEEecCCC
Q 024168 223 IEQLGGEIPIESDIAGEVIKI------------------------LRKDGDPIGYGDPLIVILPSFP 265 (271)
Q Consensus 223 IEamK~~~~V~Ap~~G~V~~I------------------------lv~~Gd~V~~Gq~L~~I~~~~~ 265 (271)
+-.-+...+|.|+.+|.|..| +++-||.|+.|+||++|..++.
T Consensus 408 ~~~a~~~~~v~A~~~G~v~~id~~~ig~~a~~lGA~id~~aGi~l~~k~Gd~V~~G~pl~~i~a~~~ 474 (500)
T TIGR03327 408 IQVGDYTYTITAPTDGYVTDIDNKAITQIAREAGAPNDKGAGVYLHVKVGEKVKKGDPLYTIYAESE 474 (500)
T ss_pred CCCCCeEEEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCcCEeCCCCeEEEEECCCH
Confidence 344566778999999999865 5789999999999999985554
No 208
>cd06910 M14_ASTE_ASPA_like_7 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=50.79 E-value=29 Score=32.09 Aligned_cols=45 Identities=16% Similarity=0.141 Sum_probs=34.0
Q ss_pred cCCCCeEec-CCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEE
Q 024168 208 CKEKQTVRE-GQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIV 259 (271)
Q Consensus 208 V~~Gd~V~~-Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~ 259 (271)
+..|+.+.+ |++|+... -.+|++|.+|.|.-. ....|..|+..++
T Consensus 226 ~~~~~~~~~~G~~la~~~----~~~~~ap~~g~vl~~---p~~~~~~G~~~~~ 271 (272)
T cd06910 226 FRGGETIPRAGTVIAHDG----GEPIRTPYDDCVLIM---PSLRPLRGQTAVR 271 (272)
T ss_pred cCCcceeccCCcEEEEeC----CeEEeCCCCCEEEEc---cCCCCCCCceeee
Confidence 567999999 99999942 289999999987643 4445557777664
No 209
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=50.66 E-value=21 Score=35.57 Aligned_cols=35 Identities=14% Similarity=0.195 Sum_probs=30.5
Q ss_pred ceEEeCCcCeEEEecccccCCCCCCccCCCCe-EecCCeEEEEEec
Q 024168 182 LVILESPKVGYFRRSRTIKGKRAPPSCKEKQT-VREGQVLCYIEQL 226 (271)
Q Consensus 182 ~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~-V~~Gq~l~~IEam 226 (271)
...|.||..|++.. +++++|+. |..|++|++|+..
T Consensus 42 ~~ei~a~~~G~l~~----------i~v~~g~~~v~vG~~l~~i~~~ 77 (435)
T TIGR01349 42 TMEFEAVEEGYLAK----------ILVPEGTKDVPVNKPIAVLVEE 77 (435)
T ss_pred eeEEcCCCCEEEEE----------EEECCCCEEecCCCEEEEEecc
Confidence 47899999999864 67999999 9999999999754
No 210
>PRK14698 V-type ATP synthase subunit A; Provisional
Probab=50.19 E-value=26 Score=38.83 Aligned_cols=58 Identities=16% Similarity=0.284 Sum_probs=39.0
Q ss_pred CccCCCCeEecCCeEEEEEecCe-eee--eecCCCeEEEEEecCCCCcccCCCeEEEEecCCC
Q 024168 206 PSCKEKQTVREGQVLCYIEQLGG-EIP--IESDIAGEVIKILRKDGDPIGYGDPLIVILPSFP 265 (271)
Q Consensus 206 ~~V~~Gd~V~~Gq~l~~IEamK~-~~~--V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~~~ 265 (271)
|.+++||.|..||+++.+.--.+ .+- |...+.|+|+.|. ..|+ -...+.+++++..+.
T Consensus 122 p~~~~g~~~~~g~~~g~~~e~~~~~h~i~~p~~~~g~~~~~~-~~g~-~~~~~~~~~~~~~~g 182 (1017)
T PRK14698 122 PKVKVGDKVVGGDIIGEVPETSIITHKIMVPPGIEGEIVEIA-DEGE-YTIEEVIAKVKTPSG 182 (1017)
T ss_pred eeeecCCCccCCCEEEEEecCCceeEeEecCCCCCEEEEEEc-CCCC-cceeeEEEEEEcCCC
Confidence 34899999999999998763222 222 3344589999984 4566 223578888876444
No 211
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=49.97 E-value=40 Score=31.25 Aligned_cols=32 Identities=13% Similarity=0.221 Sum_probs=24.4
Q ss_pred ceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEE
Q 024168 182 LVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIE 224 (271)
Q Consensus 182 ~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IE 224 (271)
...|+||+.|.+.. .++.+|+.|.. +.|+.|-
T Consensus 204 ~~~i~AP~dG~V~~----------~~~~~G~~v~~-~~l~~i~ 235 (327)
T TIGR02971 204 LTYVKAPIDGRVLK----------IHAREGEVIGS-EGILEMG 235 (327)
T ss_pred cCEEECCCCeEEEE----------EecCCCCccCC-CccEEEe
Confidence 35799999999964 35789999986 6666554
No 212
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=47.63 E-value=33 Score=31.84 Aligned_cols=38 Identities=21% Similarity=0.164 Sum_probs=31.1
Q ss_pred CeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEecCCC
Q 024168 227 GGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPSFP 265 (271)
Q Consensus 227 K~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~~~ 265 (271)
.-..-++||.+|.+. -.++-|+.|..||+|..|...+.
T Consensus 221 ~~~~~v~Ap~~G~~~-~~~~~G~~V~~G~~lg~i~dp~g 258 (288)
T cd06254 221 DDVYYVTSPASGLWY-PFVKAGDTVQKGALLGYVTDYFG 258 (288)
T ss_pred cCCEEEecCCCeEEE-EecCCCCEecCCCEEEEEECCCC
Confidence 344578999999776 55789999999999999976654
No 213
>PHA02772 hypothetical protein; Provisional
Probab=47.48 E-value=23 Score=28.46 Aligned_cols=26 Identities=12% Similarity=0.268 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHHHHhcCCccEEEEEe
Q 024168 86 PDSSEVESLVTDICNTTSVAEFELKL 111 (271)
Q Consensus 86 md~~eI~~Li~~l~~~S~l~eLelk~ 111 (271)
|++++++.++..+++++.+.||.|.-
T Consensus 1 M~~~~lk~il~~FFed~~i~el~l~F 26 (95)
T PHA02772 1 MNLKKVKRIIDMFFKEKNLDELTLAF 26 (95)
T ss_pred CCHHHHHHHHHHHhcccceeeeEEEc
Confidence 88999999999999999999999865
No 214
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=46.82 E-value=28 Score=33.95 Aligned_cols=36 Identities=31% Similarity=0.400 Sum_probs=30.8
Q ss_pred ceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecC
Q 024168 182 LVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLG 227 (271)
Q Consensus 182 ~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK 227 (271)
...|.||..|++.. .++++|+.|..|++|+.|+...
T Consensus 45 ~~~i~Ap~~G~i~~----------~~v~~G~~v~~G~~l~~i~~~~ 80 (411)
T PRK11856 45 TVEIPSPVAGTVAK----------LLVEEGDVVPVGSVIAVIEEEG 80 (411)
T ss_pred EEEEeCCCCeEEEE----------EecCCCCEeCCCCEEEEEecCC
Confidence 36799999999854 5689999999999999998654
No 215
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=44.25 E-value=42 Score=33.68 Aligned_cols=62 Identities=15% Similarity=0.148 Sum_probs=45.5
Q ss_pred eEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168 183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILP 262 (271)
Q Consensus 183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~ 262 (271)
..|+||..|++..+ .||=-=| -|.+|+..+..+-|.+. --.|+|..|+.|..|+|+..+..
T Consensus 332 a~V~A~AdG~VvyA--------~~l~GYG-------~vvIldhG~gy~slyg~----~~~i~v~~G~~V~AGepIa~~G~ 392 (420)
T COG4942 332 ATVKAIADGRVVYA--------DWLRGYG-------LVVILDHGGGYHSLYGG----NQSILVNPGQFVKAGEPIALVGS 392 (420)
T ss_pred CeeeeecCceEEec--------hhhccCc-------eEEEEEcCCccEEEecc----cceeeecCCCEeecCCchhhccC
Confidence 35777777776543 3554444 34577888888888776 44789999999999999999876
Q ss_pred C
Q 024168 263 S 263 (271)
Q Consensus 263 ~ 263 (271)
+
T Consensus 393 s 393 (420)
T COG4942 393 S 393 (420)
T ss_pred C
Confidence 5
No 216
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=43.51 E-value=50 Score=34.49 Aligned_cols=54 Identities=9% Similarity=0.124 Sum_probs=36.8
Q ss_pred ccCCCCeEecCCeEEEEEecC-eeee--eecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168 207 SCKEKQTVREGQVLCYIEQLG-GEIP--IESDIAGEVIKILRKDGDPIGYGDPLIVILP 262 (271)
Q Consensus 207 ~V~~Gd~V~~Gq~l~~IEamK-~~~~--V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~ 262 (271)
.+++||.|..|++++.+.--. +.+. |...+.|+|++|. .+|+ -...+++++++.
T Consensus 123 ~~k~gd~v~~G~i~g~v~e~~~~~h~imvpp~~~g~v~~i~-~~g~-ytv~~~i~~~~~ 179 (591)
T TIGR01042 123 KLRVGDHITGGDIYGTVFENSLIKHKIMLPPRARGTITYIA-PAGN-YTVDDTVLEVEF 179 (591)
T ss_pred ccccCCCccCCCeEEEEecCCceeeeeecCCCCceEEEEEc-cCCC-ceeeeEEEEEee
Confidence 699999999999999755222 2222 3445689999884 4565 234677777773
No 217
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=43.31 E-value=36 Score=34.21 Aligned_cols=40 Identities=20% Similarity=0.319 Sum_probs=31.9
Q ss_pred cCeeeeeecCCCeEEE-------------------------------EEecCCCCcccCCCeEEEEecCCC
Q 024168 226 LGGEIPIESDIAGEVI-------------------------------KILRKDGDPIGYGDPLIVILPSFP 265 (271)
Q Consensus 226 mK~~~~V~Ap~~G~V~-------------------------------~Ilv~~Gd~V~~Gq~L~~I~~~~~ 265 (271)
-+...+|+|+.+|.|. +++++.||.|..|++|++|.-+.+
T Consensus 337 ~~~~~~v~A~~~G~v~~id~~~ig~~a~~lGaGR~~~~~~id~~aGi~l~~k~G~~V~~Gd~l~~i~~~~~ 407 (440)
T PRK05820 337 APHTKPVYADRSGVLSAMDTRALGMAVVRLGGGRRRKGDPIDYSVGLTLHARLGDRVDAGEPLATLHADDE 407 (440)
T ss_pred CCeEEEEECCCCeEEEEecHHHHHHHHHHhCCCcCCCCCCCCcCCCeEEccCCcCEECCCCeEEEEeCCCH
Confidence 4556788888888886 446788999999999999985544
No 218
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=43.22 E-value=35 Score=32.68 Aligned_cols=32 Identities=25% Similarity=0.393 Sum_probs=28.5
Q ss_pred eeecCCCeEEEEEecCCCCcccCCCeEEEEecC
Q 024168 231 PIESDIAGEVIKILRKDGDPIGYGDPLIVILPS 263 (271)
Q Consensus 231 ~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~ 263 (271)
-|+||.+|.+. -.++.|+.|..||+|.+|...
T Consensus 257 ~v~Ap~~Gi~~-~~v~~G~~V~~G~~lg~I~d~ 288 (325)
T TIGR02994 257 FIFAEDDGLIE-FMIDLGDPVSKGDVIARVYPV 288 (325)
T ss_pred EEEcCCCeEEE-EecCCCCEeCCCCEEEEEECC
Confidence 49999999877 668999999999999999873
No 219
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=43.08 E-value=43 Score=33.35 Aligned_cols=41 Identities=24% Similarity=0.443 Sum_probs=32.0
Q ss_pred ecCeeeeeecCCCeEEEE-------------------------------EecCCCCcccCCCeEEEEecCCC
Q 024168 225 QLGGEIPIESDIAGEVIK-------------------------------ILRKDGDPIGYGDPLIVILPSFP 265 (271)
Q Consensus 225 amK~~~~V~Ap~~G~V~~-------------------------------Ilv~~Gd~V~~Gq~L~~I~~~~~ 265 (271)
.-+...+|+|+.+|.|.. ++.+.||.|+.|+||++|..+++
T Consensus 329 ~~~~~~~v~a~~~G~v~~id~~~ig~~~~~lGagr~~~~d~id~~aGi~l~~k~G~~V~~g~~l~~i~~~~~ 400 (405)
T TIGR02644 329 KAKYKEEVKAEKSGYISEIDAEELGLAAVDLGAGRARKEDKIDHEAGIYLHKKTGDRVKKGDPLATLYSSDP 400 (405)
T ss_pred CCCeEEEEECCCCeEEEEechHHHHHHHHHhCCCcCCCCCCCCcCCCeEEecCCcCEeCCCCeEEEEeCCCH
Confidence 455566788888888874 45788999999999999986554
No 220
>PRK10871 nlpD lipoprotein NlpD; Provisional
Probab=42.34 E-value=28 Score=33.61 Aligned_cols=44 Identities=16% Similarity=0.243 Sum_probs=31.3
Q ss_pred eEEeCCcCeEEEeccc-ccC------------------CCCCCccCCCCeEecCCeEEEEEec
Q 024168 183 VILESPKVGYFRRSRT-IKG------------------KRAPPSCKEKQTVREGQVLCYIEQL 226 (271)
Q Consensus 183 ~~V~sP~vG~f~~~~s-~~~------------------P~~~~~V~~Gd~V~~Gq~l~~IEam 226 (271)
..|.|+..|++..... ..+ -.....|++||.|++||.|+.+-..
T Consensus 230 ~pV~Aaa~G~Vv~ag~~~~gyGn~ViI~H~~g~~S~Yahl~~i~Vk~Gq~V~~Gq~Ig~~G~t 292 (319)
T PRK10871 230 QAIIATADGRVVYAGNALRGYGNLIIIKHNDDYLSAYAHNDTMLVREQQEVKAGQKIATMGST 292 (319)
T ss_pred CeEEeccCeEEEEEeeccCCcceEEEEEeCCceEEEeeCCCccccCCcCEECCCCeEEeEcCC
Confidence 4789999998755421 000 1235679999999999999988653
No 221
>PRK00044 psd phosphatidylserine decarboxylase; Reviewed
Probab=41.82 E-value=23 Score=33.29 Aligned_cols=49 Identities=18% Similarity=0.202 Sum_probs=35.8
Q ss_pred CCeEecCCeEEEEEecCeeeeeecCCCeEEE-EEecCCCCcccCCCeEEEEe
Q 024168 211 KQTVREGQVLCYIEQLGGEIPIESDIAGEVI-KILRKDGDPIGYGDPLIVIL 261 (271)
Q Consensus 211 Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~-~Ilv~~Gd~V~~Gq~L~~I~ 261 (271)
|..|++||.+|..+= .-...+--|.+ ++. ...+..|+.|.+|+.|..+.
T Consensus 237 ~~~v~kGee~G~F~f-GStVvllfe~~-~~~~~~~v~~g~kV~~Ge~ig~~~ 286 (288)
T PRK00044 237 AITLKKGAEMGRFKL-GSTVINLFPPG-KVQLAEQLQAGSVVRMGQPLAHIT 286 (288)
T ss_pred CCeEccccEeecccC-CCeEEEEEeCC-CceeccccCCCCEEEcChhhcCcc
Confidence 779999999999995 44455555543 332 34578999999999997653
No 222
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=41.69 E-value=39 Score=33.99 Aligned_cols=40 Identities=28% Similarity=0.314 Sum_probs=31.4
Q ss_pred cCeeeeeecCCCeEEEEE-------------------------------ecCCCCcccCCCeEEEEecCCC
Q 024168 226 LGGEIPIESDIAGEVIKI-------------------------------LRKDGDPIGYGDPLIVILPSFP 265 (271)
Q Consensus 226 mK~~~~V~Ap~~G~V~~I-------------------------------lv~~Gd~V~~Gq~L~~I~~~~~ 265 (271)
-+...+|+|+.+|.|.+| +++-||.|+.||+|++|..++.
T Consensus 336 a~~~~~v~A~~~G~v~~id~~~ig~~~~~lGaGr~~~~d~iD~~aGi~l~~k~Gd~V~~Gd~l~~i~~~~~ 406 (437)
T TIGR02643 336 APLIKPVYADREGYVSEMDTRALGMAVVALGGGRRKADDTIDYSVGLTDLLPLGDRVEKGEPLAVVHAADE 406 (437)
T ss_pred CCeEEEEECCCCeEEEEeeHHHHHHHHHHcCccccCCCCCcCcccCeEeccCCcCEeCCCCeEEEEECCCH
Confidence 455677888888888754 5788999999999999985443
No 223
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=41.65 E-value=72 Score=33.15 Aligned_cols=59 Identities=15% Similarity=0.161 Sum_probs=39.4
Q ss_pred CccCCCCeEecCCeEEEEEecCeeee--eecCCCeEEEEEecCCCCcccCCCeEEEEecCCC
Q 024168 206 PSCKEKQTVREGQVLCYIEQLGGEIP--IESDIAGEVIKILRKDGDPIGYGDPLIVILPSFP 265 (271)
Q Consensus 206 ~~V~~Gd~V~~Gq~l~~IEamK~~~~--V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~~~ 265 (271)
|.|++||.|..||+|+.+.-.....- |.-++.|.++.+.+..|+- ...+.+++++.+..
T Consensus 120 P~~~~Gd~V~~GdvlGtV~Et~~i~~imvpp~~~~~~v~~i~~~G~y-tv~d~ia~v~~~~g 180 (588)
T COG1155 120 PAVKKGDTVYPGDVLGTVQETSLITHRIMVPPGVSGKVTWIAEEGEY-TVEDVIATVSTEGG 180 (588)
T ss_pred cccccCCEeccCceEEEeccCCceEEEEeCCCCCceEEEEEecCCCc-eeeEEEEEEecCCC
Confidence 55799999999999998764442232 4455566666676667753 23567777765544
No 224
>TIGR02388 rpoC2_cyan DNA-directed RNA polymerase, beta'' subunit. The family consists of the product of the rpoC2 gene, a subunit of DNA-directed RNA polymerase of cyanobacteria and chloroplasts. RpoC2 corresponds largely to the C-terminal region of the RpoC (the beta' subunit) of other bacteria. Members of this family are designated beta'' in chloroplasts/plastids, and beta' (confusingly) in Cyanobacteria, where RpoC1 is called beta' in chloroplasts/plastids and gamma in Cyanobacteria. We prefer to name this family beta'', after its organellar members, to emphasize that this RpoC1 and RpoC2 together replace RpoC in other bacteria.
Probab=40.44 E-value=53 Score=37.17 Aligned_cols=40 Identities=33% Similarity=0.330 Sum_probs=32.4
Q ss_pred CCCCCccCCCCeEecCCeEEEEEec-------CeeeeeecCCCeEEE
Q 024168 202 KRAPPSCKEKQTVREGQVLCYIEQL-------GGEIPIESDIAGEVI 241 (271)
Q Consensus 202 P~~~~~V~~Gd~V~~Gq~l~~IEam-------K~~~~V~Ap~~G~V~ 241 (271)
+..-.||+.|+.|+.+|+|+.+-+. |....|.|+.+|+|-
T Consensus 401 ~~s~l~v~~~q~v~~~q~iae~~~~~~~~~~e~~~k~i~s~~~Ge~~ 447 (1227)
T TIGR02388 401 QGSLLFVEDGQTVDAGQLLAEIALGAVRKSTEKATKDVASDLAGEVK 447 (1227)
T ss_pred CCCEEEEECCCEEecCcEEEEeccCCcccceeEEEEEEecCCCceEE
Confidence 4556789999999999999999975 334578899988775
No 225
>CHL00117 rpoC2 RNA polymerase beta'' subunit; Reviewed
Probab=40.33 E-value=25 Score=40.10 Aligned_cols=40 Identities=25% Similarity=0.158 Sum_probs=32.8
Q ss_pred CCCCCccCCCCeEecCCeEEEEEecC--------eeeeeecCCCeEEE
Q 024168 202 KRAPPSCKEKQTVREGQVLCYIEQLG--------GEIPIESDIAGEVI 241 (271)
Q Consensus 202 P~~~~~V~~Gd~V~~Gq~l~~IEamK--------~~~~V~Ap~~G~V~ 241 (271)
+++-.+|+.||.|++||+|+.+.+.. ...+|.|+.+|+|.
T Consensus 402 ~gs~l~v~~g~~V~~~q~iae~~~~~~~~~~~e~~~~~i~s~~~G~v~ 449 (1364)
T CHL00117 402 PKSLLLVQNDQYVESEQVIAEIRAGTSTLNFKEKVRKHIYSDSEGEMH 449 (1364)
T ss_pred CCCEEEEeCcCEEcCCCEEEEECCCCcccccccccceeEEEcCCcEEE
Confidence 45667899999999999999998743 33689999999853
No 226
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=40.22 E-value=19 Score=38.21 Aligned_cols=35 Identities=29% Similarity=0.370 Sum_probs=27.7
Q ss_pred ceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecC
Q 024168 182 LVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLG 227 (271)
Q Consensus 182 ~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK 227 (271)
++.|-|-|||.+... +++||.|++||.||+-.=..
T Consensus 885 ~VaiGAmMVGSi~lt-----------~kEgd~V~~gdELGYFkFGG 919 (975)
T KOG2419|consen 885 FVAIGAMMVGSILLT-----------RKEGDHVKKGDELGYFKFGG 919 (975)
T ss_pred EEeecceeeeeEEEE-----------eecCcccccccccceEeeCC
Confidence 457788899987653 79999999999988876444
No 227
>cd06848 GCS_H Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.
Probab=40.02 E-value=32 Score=26.71 Aligned_cols=30 Identities=20% Similarity=0.445 Sum_probs=24.3
Q ss_pred cCCCeEEEEEecCC-CCcccCCCeEEEEecC
Q 024168 234 SDIAGEVIKILRKD-GDPIGYGDPLIVILPS 263 (271)
Q Consensus 234 Ap~~G~V~~Ilv~~-Gd~V~~Gq~L~~I~~~ 263 (271)
...-|.|..+.... |+.|..|++|+.|+..
T Consensus 25 ~~~lG~i~~i~~~~~G~~v~~g~~l~~iEs~ 55 (96)
T cd06848 25 QDLLGDIVFVELPEVGTEVKKGDPFGSVESV 55 (96)
T ss_pred HhhCCCEEEEEecCCCCEEeCCCEEEEEEEc
Confidence 34578899886555 9999999999999853
No 228
>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function. ; PDB: 3D4R_D.
Probab=39.37 E-value=44 Score=28.92 Aligned_cols=44 Identities=20% Similarity=0.338 Sum_probs=27.7
Q ss_pred CCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEecCCC
Q 024168 211 KQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPSFP 265 (271)
Q Consensus 211 Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~~~ 265 (271)
|-.+++|+-|+.+++- |..+-+.+..|+.|..|+.|+.+..--.
T Consensus 73 ~~~l~~G~~L~l~~ve-----------G~~v~~i~~~G~rV~~gd~lA~v~T~KG 116 (150)
T PF09891_consen 73 GILLKKGTELCLVPVE-----------GYQVYPIVDEGDRVRKGDRLAYVTTRKG 116 (150)
T ss_dssp EEEE-TT-B-EEEEEE-----------SSEEEESS-TSEEE-TT-EEEEEE-TTS
T ss_pred EEEECCCCEEEEEEec-----------ceEEEEEcccCcEeccCcEEEEEEecCc
Confidence 4456778888888754 4456677889999999999998876443
No 229
>PRK09603 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Reviewed
Probab=39.18 E-value=46 Score=40.63 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=19.7
Q ss_pred CCCCCccCCCCeEecCCeEEEEE
Q 024168 202 KRAPPSCKEKQTVREGQVLCYIE 224 (271)
Q Consensus 202 P~~~~~V~~Gd~V~~Gq~l~~IE 224 (271)
+++-..|+.|+.|++||+|+.+-
T Consensus 2612 ~~~~l~v~~g~~v~~gdilak~p 2634 (2890)
T PRK09603 2612 PKTSIAISDGSSVEQAEVLAKIP 2634 (2890)
T ss_pred CCcEEEecCCCEecccceEeecc
Confidence 56678899999999999999763
No 230
>PRK09603 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Reviewed
Probab=38.77 E-value=52 Score=40.23 Aligned_cols=60 Identities=18% Similarity=0.225 Sum_probs=45.0
Q ss_pred CCCccCCCCeEecC-----------CeEEEEEecCeeeeeecCCCeEEE-------------------------------
Q 024168 204 APPSCKEKQTVREG-----------QVLCYIEQLGGEIPIESDIAGEVI------------------------------- 241 (271)
Q Consensus 204 ~~~~V~~Gd~V~~G-----------q~l~~IEamK~~~~V~Ap~~G~V~------------------------------- 241 (271)
+..+|..|+.|++| ++||.=+ .-..+|-|+++|+|.
T Consensus 2513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd--p~~~pii~e~~G~v~f~d~~~g~t~~~~~D~~tG~~~~~v~~~~~~ 2590 (2890)
T PRK09603 2513 SEILIDDNSEVSANSVISKPTTNTFKTIATWD--PYNTPIIADFKGKVSFVDIIAGVTVAEKEDENTGITSLVVNDYIPS 2590 (2890)
T ss_pred ccccccccccccCCccccccccccccEEEEeC--CCCCcEEeecceEEEEEeeecCceEEEEeccccCceEEEEeecccc
Confidence 67889999999999 6666543 344567777777653
Q ss_pred ------------------------EEecCCCCcccCCCeEEEEecCCC
Q 024168 242 ------------------------KILRKDGDPIGYGDPLIVILPSFP 265 (271)
Q Consensus 242 ------------------------~Ilv~~Gd~V~~Gq~L~~I~~~~~ 265 (271)
-+.|++|+.|..|+.|+++-....
T Consensus 2591 ~~~p~i~i~~~~~~~~~y~lp~~~~l~v~~g~~v~~gdilak~p~~~~ 2638 (2890)
T PRK09603 2591 GYKPSLFLEGANGEEIRYFLEPKTSIAISDGSSVEQAEVLAKIPKATV 2638 (2890)
T ss_pred CCcceEEEEcCCCcEEEEecCCCcEEEecCCCEecccceEeecccccc
Confidence 256889999999999999865444
No 231
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=38.34 E-value=75 Score=29.99 Aligned_cols=36 Identities=17% Similarity=-0.031 Sum_probs=30.6
Q ss_pred eeeeeecCCCeEEEEEecCCCCcccCCCeEEEEecCC
Q 024168 228 GEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPSF 264 (271)
Q Consensus 228 ~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~~ 264 (271)
...-|+||.+|.+. -.++.|+.|+.||+|.+|...+
T Consensus 243 ~~~~v~A~~~G~~~-~~~~~G~~V~~G~~lg~i~d~~ 278 (316)
T cd06252 243 ARCYVFAPHPGLFE-PLVDLGDEVSAGQVAGRIHFPE 278 (316)
T ss_pred CcEEEEcCCCeEEE-EecCCCCEEcCCCEEEEEECCC
Confidence 34579999999776 5688999999999999998765
No 232
>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]
Probab=37.16 E-value=30 Score=35.02 Aligned_cols=27 Identities=26% Similarity=0.562 Sum_probs=25.2
Q ss_pred CeEEEEEecCCCCcccCCCeEEEEecC
Q 024168 237 AGEVIKILRKDGDPIGYGDPLIVILPS 263 (271)
Q Consensus 237 ~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~ 263 (271)
-|.|+++.-++||.+..|+.|++|+.+
T Consensus 52 eGnIvsW~kKeGdkls~GDvl~EVETD 78 (470)
T KOG0557|consen 52 EGNIVSWKKKEGDKLSAGDVLLEVETD 78 (470)
T ss_pred CCceeeEeeccCCccCCCceEEEEecc
Confidence 688999999999999999999999964
No 233
>PRK02597 rpoC2 DNA-directed RNA polymerase subunit beta'; Provisional
Probab=37.11 E-value=44 Score=38.12 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=19.8
Q ss_pred CCCCCccCCCCeEecCCeEEEE
Q 024168 202 KRAPPSCKEKQTVREGQVLCYI 223 (271)
Q Consensus 202 P~~~~~V~~Gd~V~~Gq~l~~I 223 (271)
|++-..+.-||.|++||+|+.+
T Consensus 948 ~ga~~~~~~g~~v~~Gd~L~~l 969 (1331)
T PRK02597 948 PGAVLHVRDGDLVQRGDNLALL 969 (1331)
T ss_pred CCCEEEecCCCEecCCCeEEEE
Confidence 7888899999999999999865
No 234
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=36.22 E-value=58 Score=32.77 Aligned_cols=38 Identities=24% Similarity=0.378 Sum_probs=30.3
Q ss_pred ecCeeeeeecCCCeEEEE-------------------------------EecCCCCcccCCCeEEEEec
Q 024168 225 QLGGEIPIESDIAGEVIK-------------------------------ILRKDGDPIGYGDPLIVILP 262 (271)
Q Consensus 225 amK~~~~V~Ap~~G~V~~-------------------------------Ilv~~Gd~V~~Gq~L~~I~~ 262 (271)
.-+...+|.|+.+|.|.. ++++.||.|..||+|++|..
T Consensus 331 ~~~~~~~v~a~~~G~v~~id~~~ig~~~~~lGagr~~~~d~id~~aGi~l~~k~g~~V~~g~~l~~i~~ 399 (434)
T PRK06078 331 QAKYQIEVPAKESGYISELVADEIGLAAMLLGAGRATKEDEIDLAVGIVLRKKVGDSVKKGESLATIYA 399 (434)
T ss_pred CCCeEEEEECCCCeEEEEeeHHHHHHHHHHcCCCCCCCCCccCcccCeEeccCCcCEeCCCCeEEEEeC
Confidence 445567788888888874 45788999999999999984
No 235
>PRK06149 hypothetical protein; Provisional
Probab=34.99 E-value=31 Score=37.69 Aligned_cols=39 Identities=21% Similarity=0.348 Sum_probs=29.3
Q ss_pred eEEeCCcCeEEEecccccCCCC---------------CCccCCCCeEecCCeEEEEEe
Q 024168 183 VILESPKVGYFRRSRTIKGKRA---------------PPSCKEKQTVREGQVLCYIEQ 225 (271)
Q Consensus 183 ~~V~sP~vG~f~~~~s~~~P~~---------------~~~V~~Gd~V~~Gq~l~~IEa 225 (271)
..|.||+.|++.... .+. ...+++||.|++||.||.+-.
T Consensus 443 t~v~Ap~~G~v~~~~----~~~~~l~~~~~f~~l~g~~~~~~~g~~v~~G~~~~~~g~ 496 (972)
T PRK06149 443 TAVAAPFAGTVVRDG----QGHLTLRGDALELHLDGVEPAVEDGAAVRAGDPLGSVAG 496 (972)
T ss_pred CeEECccCcEEEEec----CCceEecCCCcEEEEecccccCCCCCeecCCchheecCC
Confidence 569999999987653 111 223889999999999998774
No 236
>COG0739 NlpD Membrane proteins related to metalloendopeptidases [Cell envelope biogenesis, outer membrane]
Probab=34.34 E-value=29 Score=30.85 Aligned_cols=20 Identities=40% Similarity=0.566 Sum_probs=18.2
Q ss_pred CCccCCCCeEecCCeEEEEE
Q 024168 205 PPSCKEKQTVREGQVLCYIE 224 (271)
Q Consensus 205 ~~~V~~Gd~V~~Gq~l~~IE 224 (271)
...|++||.|++||+|+.+-
T Consensus 215 ~~~V~~G~~V~~G~~Ig~~G 234 (277)
T COG0739 215 SILVKEGQKVKAGQVIGYVG 234 (277)
T ss_pred hhccCCCCEeccCCEEEEec
Confidence 57899999999999999984
No 237
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=33.08 E-value=30 Score=32.87 Aligned_cols=21 Identities=33% Similarity=0.368 Sum_probs=19.1
Q ss_pred CCccCCCCeEecCCeEEEEEe
Q 024168 205 PPSCKEKQTVREGQVLCYIEQ 225 (271)
Q Consensus 205 ~~~V~~Gd~V~~Gq~l~~IEa 225 (271)
.|+++.|+.|++||+|+.++.
T Consensus 67 ~~~~~DG~~v~~g~~i~~~~G 87 (280)
T COG0157 67 QWLVKDGDRVKPGDVLAEIEG 87 (280)
T ss_pred EEEcCCCCEeCCCCEEEEEec
Confidence 478999999999999999984
No 238
>KOG1668 consensus Elongation factor 1 beta/delta chain [Transcription]
Probab=32.19 E-value=34 Score=31.63 Aligned_cols=36 Identities=17% Similarity=0.122 Sum_probs=30.8
Q ss_pred CcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeee
Q 024168 188 PKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIP 231 (271)
Q Consensus 188 P~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~ 231 (271)
.|-|-+|- +.++|-+|..+++=|+.|.||.+|+..+
T Consensus 172 ~~~gl~wg--------asklvpvGygikKlqi~~vveddkvs~D 207 (231)
T KOG1668|consen 172 EMDGLVWG--------ASKLVPVGYGIKKLQIQCVVEDDKVSID 207 (231)
T ss_pred hhccceec--------cccccccccceeeEEEEEEEEcCccccc
Confidence 47888874 4589999999999999999999998653
No 239
>COG4072 Uncharacterized protein conserved in archaea [Function unknown]
Probab=32.05 E-value=1e+02 Score=26.70 Aligned_cols=33 Identities=18% Similarity=0.378 Sum_probs=28.3
Q ss_pred CCCeEEEEEecCCCCcccCCCeEEEEecCCCCC
Q 024168 235 DIAGEVIKILRKDGDPIGYGDPLIVILPSFPGI 267 (271)
Q Consensus 235 p~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~~~~~ 267 (271)
|+-|-|+...+.-|..|-.|++++.+....+++
T Consensus 97 PvEGYvVtpIaDvG~RvrkGd~~AAvttRkG~v 129 (161)
T COG4072 97 PVEGYVVTPIADVGNRVRKGDPFAAVTTRKGEV 129 (161)
T ss_pred ecCcEEEEEeecccchhcCCCceeEEEecccce
Confidence 778999999999999999999999987655544
No 240
>PHA01624 hypothetical protein
Probab=30.41 E-value=62 Score=26.38 Aligned_cols=26 Identities=8% Similarity=0.281 Sum_probs=23.5
Q ss_pred CCHHHHHHHHHHHHhcCCccEEEEEe
Q 024168 86 PDSSEVESLVTDICNTTSVAEFELKL 111 (271)
Q Consensus 86 md~~eI~~Li~~l~~~S~l~eLelk~ 111 (271)
|.++++..++.-+++.+.|.||+|+-
T Consensus 1 M~~~~L~~~l~~FFEd~~i~El~l~F 26 (102)
T PHA01624 1 MEFEDLDVVLYVFFENPEMKSFEFEF 26 (102)
T ss_pred CchhHHHHHHHHHhccCccceeEEEe
Confidence 78899999999999999999999864
No 241
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=30.22 E-value=61 Score=32.71 Aligned_cols=35 Identities=11% Similarity=0.091 Sum_probs=29.2
Q ss_pred ceEEeCCcCeEEEecccccCCCCCCccCCCC-eEecCCeEEEEEec
Q 024168 182 LVILESPKVGYFRRSRTIKGKRAPPSCKEKQ-TVREGQVLCYIEQL 226 (271)
Q Consensus 182 ~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd-~V~~Gq~l~~IEam 226 (271)
...|.||..|++.. .++++|+ .|+.|++|++|+..
T Consensus 45 ~~ev~A~~~G~v~~----------i~v~~G~~~V~vG~~i~~i~~~ 80 (464)
T PRK11892 45 TMEVEAVDEGTLGK----------ILVPEGTEGVKVNTPIAVLLEE 80 (464)
T ss_pred eeeecCCCceEEEE----------EEecCCCcEeCCCCEEEEEccC
Confidence 36799999999853 5799995 79999999999753
No 242
>PHA02771 hypothetical protein; Provisional
Probab=29.13 E-value=30 Score=27.60 Aligned_cols=26 Identities=12% Similarity=0.315 Sum_probs=23.4
Q ss_pred CCHHHHHHHHHHHHhcCCccEEEEEe
Q 024168 86 PDSSEVESLVTDICNTTSVAEFELKL 111 (271)
Q Consensus 86 md~~eI~~Li~~l~~~S~l~eLelk~ 111 (271)
|++++++.+|+.+++++.|-||.|.-
T Consensus 1 M~f~~lK~ii~~fF~d~~i~El~L~F 26 (90)
T PHA02771 1 MEFEELKSIIDKFFQDQTIIRINLMF 26 (90)
T ss_pred CChHHHHHHHHHHhcccchHHhhhhc
Confidence 88999999999999999999988743
No 243
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=28.81 E-value=39 Score=33.97 Aligned_cols=22 Identities=14% Similarity=0.138 Sum_probs=19.1
Q ss_pred CCCccCCCCeEecCCeEEEEEe
Q 024168 204 APPSCKEKQTVREGQVLCYIEQ 225 (271)
Q Consensus 204 ~~~~V~~Gd~V~~Gq~l~~IEa 225 (271)
...+++.||.|++||+|+.|-+
T Consensus 382 i~l~~k~Gd~V~~Gd~l~~i~~ 403 (437)
T TIGR02643 382 LTDLLPLGDRVEKGEPLAVVHA 403 (437)
T ss_pred eEeccCCcCEeCCCCeEEEEEC
Confidence 3467899999999999999874
No 244
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=28.10 E-value=42 Score=33.81 Aligned_cols=23 Identities=13% Similarity=0.112 Sum_probs=19.7
Q ss_pred CCCccCCCCeEecCCeEEEEEec
Q 024168 204 APPSCKEKQTVREGQVLCYIEQL 226 (271)
Q Consensus 204 ~~~~V~~Gd~V~~Gq~l~~IEam 226 (271)
...+++.||.|++||+|+.|-+.
T Consensus 383 i~l~~k~G~~V~~Gd~l~~i~~~ 405 (440)
T PRK05820 383 LTLHARLGDRVDAGEPLATLHAD 405 (440)
T ss_pred eEEccCCcCEECCCCeEEEEeCC
Confidence 45679999999999999999743
No 245
>PTZ00403 phosphatidylserine decarboxylase; Provisional
Probab=27.16 E-value=1.1e+02 Score=30.03 Aligned_cols=81 Identities=11% Similarity=0.077 Sum_probs=49.6
Q ss_pred ceEEeCCcCeEEEeccc--ccCCC------------CCCccCCCCeEecCCeEEEEEecCeeeee-ecCCCeEEEEEecC
Q 024168 182 LVILESPKVGYFRRSRT--IKGKR------------APPSCKEKQTVREGQVLCYIEQLGGEIPI-ESDIAGEVIKILRK 246 (271)
Q Consensus 182 ~~~V~sP~vG~f~~~~s--~~~P~------------~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V-~Ap~~G~V~~Ilv~ 246 (271)
.+.|-|-+||.+...-. ...+. ..+.-..+..|++||.+|.-+=..+..-+ +++. . .+..++
T Consensus 248 ~v~VGA~~VGsI~~~~~~~l~tn~~~~~~~~~~~~~~~~~y~~~~~v~KGeElG~F~~GSTVVllFe~~~--~-~~~~l~ 324 (353)
T PTZ00403 248 YAAISAYNVGNIKIINDEELVTNNLRTQLSYMGGDINTKIYDSYKSVEVGDEVGEFRMGSSIVVIFENKK--N-FSWNVK 324 (353)
T ss_pred EEEEeeEEEEEEEEEeccccccccccccccccCCcceeeecCCCCcccccceeeEeccCCeEEEEEeCCC--c-CCcccC
Confidence 46788889998853211 00000 11112235689999999998854443322 2332 1 345578
Q ss_pred CCCcccCCCeEEEEecCCC
Q 024168 247 DGDPIGYGDPLIVILPSFP 265 (271)
Q Consensus 247 ~Gd~V~~Gq~L~~I~~~~~ 265 (271)
.|+.|.+||.|..+.+..+
T Consensus 325 ~g~~Vr~Gq~lg~~~~~~~ 343 (353)
T PTZ00403 325 PNQTVSVGQRLGGVGEPVR 343 (353)
T ss_pred CCCEEEeeeeccccCCCCC
Confidence 9999999999998876444
No 246
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=26.61 E-value=46 Score=33.48 Aligned_cols=24 Identities=21% Similarity=0.127 Sum_probs=20.3
Q ss_pred CCCccCCCCeEecCCeEEEEEecC
Q 024168 204 APPSCKEKQTVREGQVLCYIEQLG 227 (271)
Q Consensus 204 ~~~~V~~Gd~V~~Gq~l~~IEamK 227 (271)
...+++.||.|++||+|+.|-+.+
T Consensus 378 i~l~~k~g~~V~~g~~l~~i~~~~ 401 (434)
T PRK06078 378 IVLRKKVGDSVKKGESLATIYANR 401 (434)
T ss_pred eEeccCCcCEeCCCCeEEEEeCCh
Confidence 456799999999999999987543
No 247
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=26.25 E-value=43 Score=34.26 Aligned_cols=45 Identities=20% Similarity=0.195 Sum_probs=30.5
Q ss_pred ceEEeCCcCeEEEecc------------cc--cCCCCCCccCCCCeEecCCeEEEEEec
Q 024168 182 LVILESPKVGYFRRSR------------TI--KGKRAPPSCKEKQTVREGQVLCYIEQL 226 (271)
Q Consensus 182 ~~~V~sP~vG~f~~~~------------s~--~~P~~~~~V~~Gd~V~~Gq~l~~IEam 226 (271)
...|+||..|.+..-. .| ++-+...+++.||.|++||+|+.|-+.
T Consensus 413 ~~~v~A~~~G~v~~id~~~i~~~a~~~GAp~d~~aGi~l~~k~Gd~V~~Gd~l~~i~a~ 471 (493)
T TIGR02645 413 TADIHAETDGYVTEIDNKHITRIARLAGAPNDKGAGVELHVKVGDQVKKGDPLYTIYAE 471 (493)
T ss_pred EEEEEcCCCeEEEEeehHHHHHHHHHcCCCcCcCcCeEEeccCCCEecCCCeEEEEECC
Confidence 4567777777664311 01 122345789999999999999998743
No 248
>PRK04350 thymidine phosphorylase; Provisional
Probab=25.76 E-value=45 Score=34.07 Aligned_cols=45 Identities=22% Similarity=0.256 Sum_probs=30.8
Q ss_pred ceEEeCCcCeEEEecc------------cc--cCCCCCCccCCCCeEecCCeEEEEEec
Q 024168 182 LVILESPKVGYFRRSR------------TI--KGKRAPPSCKEKQTVREGQVLCYIEQL 226 (271)
Q Consensus 182 ~~~V~sP~vG~f~~~~------------s~--~~P~~~~~V~~Gd~V~~Gq~l~~IEam 226 (271)
...|.||..|.+..-. .| ++-+...+++.||.|++||+|+.|-+.
T Consensus 405 ~~~v~A~~~G~v~~id~~~ig~~a~~lGap~d~~aGi~l~~k~Gd~V~~G~~l~~i~a~ 463 (490)
T PRK04350 405 THDVTAPRDGYVTAIDNRRLARIARLAGAPKDKGAGIDLHVKVGDKVKKGDPLYTIHAE 463 (490)
T ss_pred EEEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCCCEecCCCeEEEEecC
Confidence 4567788777664311 01 122355789999999999999998754
No 249
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=25.40 E-value=81 Score=29.36 Aligned_cols=27 Identities=30% Similarity=0.400 Sum_probs=21.2
Q ss_pred CeEEEEEecCCCCcccCCCeEEEEecC
Q 024168 237 AGEVIKILRKDGDPIGYGDPLIVILPS 263 (271)
Q Consensus 237 ~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~ 263 (271)
+|.-.++.++||+.|..|++|++++-.
T Consensus 56 ~~l~v~~~~~dG~~v~~g~~i~~i~G~ 82 (268)
T cd01572 56 PGIEVEWLVKDGDRVEPGQVLATVEGP 82 (268)
T ss_pred CCeEEEEEeCCCCEecCCCEEEEEEEC
Confidence 466667888888888888888888744
No 250
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=25.37 E-value=83 Score=32.85 Aligned_cols=54 Identities=24% Similarity=0.425 Sum_probs=35.0
Q ss_pred CccCCCCeEecCCeEEEEE-ecCeeee--eecCCCeEEEEEecCCCCcccCCCeEEEEe
Q 024168 206 PSCKEKQTVREGQVLCYIE-QLGGEIP--IESDIAGEVIKILRKDGDPIGYGDPLIVIL 261 (271)
Q Consensus 206 ~~V~~Gd~V~~Gq~l~~IE-amK~~~~--V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~ 261 (271)
|.+++||.|..||+++.+. +.-+.+. +...+.|+|+.|. .+|+. ...+++.+++
T Consensus 119 p~~~~gd~v~~g~i~g~v~e~~~i~h~im~pp~~~g~v~~i~-~~g~~-~~~~~v~~~~ 175 (578)
T TIGR01043 119 PTVKEGDKVEGGDIIGVVPETSLIEHKILVPPNVEGEIVEIA-EEGDY-TVEDTIAVVD 175 (578)
T ss_pred cccccCccccCCceEEEEecccceeeeeecCCCCcceEEEec-cCCCc-eeeeeEEEEe
Confidence 4589999999999999874 3333332 3344699998884 34542 2245555554
No 251
>PF02666 PS_Dcarbxylase: Phosphatidylserine decarboxylase; InterPro: IPR003817 Phosphatidylserine decarboxylase plays a pivotal role in the synthesis of phospholipid by the mitochondria. The substrate phosphatidylserine is synthesized extramitochondrially and must be translocated to the mitochondria prior to decarboxylation []. Phosphatidylserine decarboxylases 4.1.1.65 from EC is responsible for conversion of phosphatidylserine to phosphatidylethanolamine and plays a central role in the biosynthesis of aminophospholipids [].; GO: 0004609 phosphatidylserine decarboxylase activity, 0008654 phospholipid biosynthetic process
Probab=24.96 E-value=47 Score=29.25 Aligned_cols=18 Identities=39% Similarity=0.484 Sum_probs=16.8
Q ss_pred CCccCCCCeEecCCeEEE
Q 024168 205 PPSCKEKQTVREGQVLCY 222 (271)
Q Consensus 205 ~~~V~~Gd~V~~Gq~l~~ 222 (271)
.+.+++|+.|+.||.|++
T Consensus 185 ~~~v~~g~~V~~Ge~i~~ 202 (202)
T PF02666_consen 185 EWSVKPGQKVRAGETIGY 202 (202)
T ss_pred ccccCCCCEEEeeeEEeC
Confidence 899999999999999974
No 252
>PRK10718 RpoE-regulated lipoprotein; Provisional
Probab=24.41 E-value=1.2e+02 Score=27.32 Aligned_cols=43 Identities=21% Similarity=0.342 Sum_probs=34.6
Q ss_pred cCCCCeEecCCeEEEEEecCe---eeeeecCCCeEEEEEecCCCCcc
Q 024168 208 CKEKQTVREGQVLCYIEQLGG---EIPIESDIAGEVIKILRKDGDPI 251 (271)
Q Consensus 208 V~~Gd~V~~Gq~l~~IEamK~---~~~V~Ap~~G~V~~Ilv~~Gd~V 251 (271)
+..|.....|+++-+.|+||- .+.|.-+ .|+|.+|.|.|++..
T Consensus 70 lrsGm~t~~G~iv~~~qa~~~d~v~lvi~G~-~G~V~rI~V~d~~i~ 115 (191)
T PRK10718 70 LRSGMKTANGNVVRFFQAMKGDQVAMVINGQ-QGTVSRIDVLDSDIP 115 (191)
T ss_pred EeccccCCCCCEEEeeeeecCCceEEEEECC-CCcEEEEEEeCCCCC
Confidence 466888888999998888874 4456666 889999999999875
No 253
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=24.12 E-value=54 Score=32.67 Aligned_cols=23 Identities=17% Similarity=0.108 Sum_probs=19.7
Q ss_pred CCCccCCCCeEecCCeEEEEEec
Q 024168 204 APPSCKEKQTVREGQVLCYIEQL 226 (271)
Q Consensus 204 ~~~~V~~Gd~V~~Gq~l~~IEam 226 (271)
...+++.||.|++||+|+.|-+.
T Consensus 376 i~l~~k~G~~V~~g~~l~~i~~~ 398 (405)
T TIGR02644 376 IYLHKKTGDRVKKGDPLATLYSS 398 (405)
T ss_pred eEEecCCcCEeCCCCeEEEEeCC
Confidence 45678999999999999998753
No 254
>PRK13380 glycine cleavage system protein H; Provisional
Probab=23.75 E-value=81 Score=26.83 Aligned_cols=33 Identities=21% Similarity=0.368 Sum_probs=28.5
Q ss_pred eeeecCCCeEEEEEecC-CCCcccCCCeEEEEec
Q 024168 230 IPIESDIAGEVIKILRK-DGDPIGYGDPLIVILP 262 (271)
Q Consensus 230 ~~V~Ap~~G~V~~Ilv~-~Gd~V~~Gq~L~~I~~ 262 (271)
.+.-...-|.|..+.+. .|+.|+.|++|+.|+.
T Consensus 36 td~aq~~lG~I~~v~lp~~G~~V~~Gd~~~~IEs 69 (144)
T PRK13380 36 TDYAQTMAGDVVFVRLKELGKKVEKGKPVATLES 69 (144)
T ss_pred CHHHHHhcCCEEEEEcCCCCCEeeCCCeEEEEEE
Confidence 56667888999999876 7999999999999984
No 255
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=23.67 E-value=54 Score=33.62 Aligned_cols=24 Identities=21% Similarity=0.119 Sum_probs=20.2
Q ss_pred CCCCccCCCCeEecCCeEEEEEec
Q 024168 203 RAPPSCKEKQTVREGQVLCYIEQL 226 (271)
Q Consensus 203 ~~~~~V~~Gd~V~~Gq~l~~IEam 226 (271)
+...+++.||.|++||+|+.|-+.
T Consensus 449 Gi~l~~k~Gd~V~~G~pl~~i~a~ 472 (500)
T TIGR03327 449 GVYLHVKVGEKVKKGDPLYTIYAE 472 (500)
T ss_pred CeEEeccCcCEeCCCCeEEEEECC
Confidence 345679999999999999998744
No 256
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=23.42 E-value=53 Score=30.55 Aligned_cols=21 Identities=33% Similarity=0.354 Sum_probs=19.0
Q ss_pred CCccCCCCeEecCCeEEEEEe
Q 024168 205 PPSCKEKQTVREGQVLCYIEQ 225 (271)
Q Consensus 205 ~~~V~~Gd~V~~Gq~l~~IEa 225 (271)
.|+++.|+.|++||+|+.++-
T Consensus 61 ~~~~~dG~~v~~g~~i~~i~G 81 (268)
T cd01572 61 EWLVKDGDRVEPGQVLATVEG 81 (268)
T ss_pred EEEeCCCCEecCCCEEEEEEE
Confidence 478999999999999999983
No 257
>PRK11649 putative peptidase; Provisional
Probab=23.36 E-value=63 Score=32.35 Aligned_cols=21 Identities=19% Similarity=0.205 Sum_probs=18.1
Q ss_pred CCccCCCCeEecCCeEEEEEe
Q 024168 205 PPSCKEKQTVREGQVLCYIEQ 225 (271)
Q Consensus 205 ~~~V~~Gd~V~~Gq~l~~IEa 225 (271)
...|++||.|++||+||.+-.
T Consensus 364 ~~~v~~Gq~V~~Gq~IG~vG~ 384 (439)
T PRK11649 364 KLLVKPGQKVKRGDRIALSGN 384 (439)
T ss_pred cccCCCcCEECCCCeEEEEcC
Confidence 456999999999999999753
No 258
>PF01333 Apocytochr_F_C: Apocytochrome F, C-terminal; InterPro: IPR002325 The cytochrome b6f integral membrane protein complex transfers electrons between the two reaction centre complexes of oxygenic photosynthetic membranes, and participates in formation of the transmembrane electrochemical proton gradient by also transferring protons from the stromal to the internal lumen compartment []. The cytochrome b6f complex contains four polypeptides: cytochrome f (285 aa); cytochrome b6 (215 aa); Rieske iron-sulphur protein (179 aa); and subunit IV (160 aa) []. In its structure and functions, the cytochrome b6f complex bears extensive analogy to the cytochrome bc1 complex of mitochondria and photosynthetic purple bacteria; cytochrome f (cyt f) plays a role analogous to that of cytochrome c1, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0015979 photosynthesis, 0031361 integral to thylakoid membrane; PDB: 2E75_C 2E74_C 1VF5_P 2D2C_P 2E76_C 1TU2_B 2ZT9_C 1E2V_A 1CFM_A 1E2W_B ....
Probab=22.28 E-value=37 Score=28.30 Aligned_cols=20 Identities=25% Similarity=0.197 Sum_probs=12.7
Q ss_pred CCCCCccCCCCeEecCCeEE
Q 024168 202 KRAPPSCKEKQTVREGQVLC 221 (271)
Q Consensus 202 P~~~~~V~~Gd~V~~Gq~l~ 221 (271)
|+.+..|++||.|+.||.|-
T Consensus 42 ~GpeLiV~eG~~V~~dqpLT 61 (118)
T PF01333_consen 42 AGPELIVSEGQSVKADQPLT 61 (118)
T ss_dssp SSS-BS--TT-EETTT-BSB
T ss_pred CCCeEEEcCCCEEecCCccc
Confidence 66789999999999999873
No 259
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=21.62 E-value=60 Score=30.50 Aligned_cols=21 Identities=14% Similarity=0.376 Sum_probs=19.2
Q ss_pred CCCccCCCCeEecCCeEEEEE
Q 024168 204 APPSCKEKQTVREGQVLCYIE 224 (271)
Q Consensus 204 ~~~~V~~Gd~V~~Gq~l~~IE 224 (271)
..|+++.|+.|++|++|+.++
T Consensus 66 v~~~~~dG~~v~~g~~i~~~~ 86 (277)
T PRK08072 66 VELHKKDGDLVKKGEIIATVQ 86 (277)
T ss_pred EEEEeCCCCEEcCCCEEEEEE
Confidence 468899999999999999998
No 260
>PRK14844 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Provisional
Probab=21.16 E-value=1.6e+02 Score=36.20 Aligned_cols=82 Identities=16% Similarity=0.124 Sum_probs=55.1
Q ss_pred ceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEe-----------cCee------------eeeecCCCe
Q 024168 182 LVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQ-----------LGGE------------IPIESDIAG 238 (271)
Q Consensus 182 ~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEa-----------mK~~------------~~V~Ap~~G 238 (271)
.+.|+||+.-.-.+.- =..=--|...-|..|+-|+.||+|-| |-++ ..|+|+.+|
T Consensus 2300 ~v~IRS~ltC~s~~gv--C~~CYG~~La~~~~V~iGeaVGiIAAQSIGEPGTQLTMRTFHtGGvas~~~~~~~i~~~~~G 2377 (2836)
T PRK14844 2300 VVKIRSPLTCEISPGV--CSLCYGRDLATGKIVSIGEAVGVIAAQSVGEPGTQLTMRTFHIGGVMTRGVESSNIIASINA 2377 (2836)
T ss_pred EEEEcCCeeECCCCCC--hhhccCccccCCCcccccccceeeeecccCCCcceeeeeheeeccccccccccceeEeccCc
Confidence 3678888754321100 00112355677889999999998873 3333 247888888
Q ss_pred EEE------------------------------------------EEecCCCCcccCCCeEEEEecCCC
Q 024168 239 EVI------------------------------------------KILRKDGDPIGYGDPLIVILPSFP 265 (271)
Q Consensus 239 ~V~------------------------------------------~Ilv~~Gd~V~~Gq~L~~I~~~~~ 265 (271)
+|. .++|+||+.|+.||.|+.+.|-..
T Consensus 2378 ~v~~~~~~~v~~~~g~~iv~sr~~~~~i~d~~g~~~~~~~i~yga~l~v~~g~~V~~g~~la~wdp~~~ 2446 (2836)
T PRK14844 2378 KIKLNNSNIIIDKNGNKIVISRSCEVVLIDSLGSEKLKHSVPYGAKLYVDEGGSVKIGDKVAEWDPYTL 2446 (2836)
T ss_pred eEEeccceeEEcCCCcEEEEecccEEEEEecCCcEEEEEecccccEEEecCCCEecCCCEEEEEcCCCc
Confidence 775 357899999999999999987543
No 261
>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein. It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.
Probab=20.79 E-value=77 Score=27.84 Aligned_cols=20 Identities=20% Similarity=0.302 Sum_probs=16.9
Q ss_pred CCCCCccCCCCeEecCCeEE
Q 024168 202 KRAPPSCKEKQTVREGQVLC 221 (271)
Q Consensus 202 P~~~~~V~~Gd~V~~Gq~l~ 221 (271)
++..+.|++||+|+.||+|.
T Consensus 163 ~~~~~~v~~G~~V~~G~tli 182 (189)
T TIGR00164 163 ENAQAQVKVGEKVTAGETVL 182 (189)
T ss_pred CCCccccCCCCEEEeceEEE
Confidence 45688999999999999763
No 262
>CHL00117 rpoC2 RNA polymerase beta'' subunit; Reviewed
Probab=20.65 E-value=3.1e+02 Score=31.78 Aligned_cols=76 Identities=9% Similarity=0.035 Sum_probs=41.2
Q ss_pred eEEeCCcCeEEEecccccCCCCCCccCCCCe--EecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEE
Q 024168 183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQT--VREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVI 260 (271)
Q Consensus 183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~--V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I 260 (271)
..|+||..|.+..... -.....-.-|+. +.....+.+|+.......+.-|... .++|+||+.|+.||.|+++
T Consensus 350 ~~i~a~~~G~i~~~~~---~~~~~rt~~g~~~~~~~~~~~~~i~~~~~~~~~~ip~gs---~l~v~~g~~V~~~q~iae~ 423 (1364)
T CHL00117 350 EQVRAPFNGKIKFNED---LVHPTRTRHGHPAFLCKIDLYVTIESEDIIHNVNIPPKS---LLLVQNDQYVESEQVIAEI 423 (1364)
T ss_pred eeEEeccCeEEEEecc---eeeEEeCcCCEEEEEEecceEEEEeCCCeEEEEEeCCCC---EEEEeCcCEEcCCCEEEEE
Confidence 5799999998755321 000111111221 1222233334433333333333322 3578999999999999999
Q ss_pred ecCC
Q 024168 261 LPSF 264 (271)
Q Consensus 261 ~~~~ 264 (271)
.+..
T Consensus 424 ~~~~ 427 (1364)
T CHL00117 424 RAGT 427 (1364)
T ss_pred CCCC
Confidence 8754
No 263
>PRK05305 phosphatidylserine decarboxylase; Provisional
Probab=20.56 E-value=73 Score=28.37 Aligned_cols=19 Identities=21% Similarity=0.246 Sum_probs=16.1
Q ss_pred CCCCCccCCCCeEecCCeE
Q 024168 202 KRAPPSCKEKQTVREGQVL 220 (271)
Q Consensus 202 P~~~~~V~~Gd~V~~Gq~l 220 (271)
++.++.|++||+|+.||+|
T Consensus 183 ~~~~~~V~~G~kV~~Getv 201 (206)
T PRK05305 183 LGTEPLVSVGQKVVAGETV 201 (206)
T ss_pred CCCcccccCCCEEEcccEE
Confidence 4468899999999999955
No 264
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=20.25 E-value=66 Score=30.48 Aligned_cols=20 Identities=15% Similarity=0.189 Sum_probs=0.0
Q ss_pred CCccCCCCeEecCCeEEEEE
Q 024168 205 PPSCKEKQTVREGQVLCYIE 224 (271)
Q Consensus 205 ~~~V~~Gd~V~~Gq~l~~IE 224 (271)
+|+++.|+.|++|++|+.++
T Consensus 64 ~~~~~dG~~v~~G~~i~~~~ 83 (284)
T PRK06096 64 DDAVSDGSQANAGQRLISAQ 83 (284)
T ss_pred EEEeCCCCEeCCCCEEEEEE
No 265
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=20.22 E-value=40 Score=28.24 Aligned_cols=15 Identities=27% Similarity=0.439 Sum_probs=13.6
Q ss_pred ceeeccccccccccc
Q 024168 10 NIKIPKGNLGRARVG 24 (271)
Q Consensus 10 ~~~~~~~~~~~~~~~ 24 (271)
+-+++.+|||.+|+|
T Consensus 3 ~~~iLalD~G~kriG 17 (138)
T PRK00109 3 SGRILGLDVGTKRIG 17 (138)
T ss_pred CCcEEEEEeCCCEEE
Confidence 457999999999999
Done!