Query 024168
Match_columns 271
No_of_seqs 233 out of 2101
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 03:33:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024168.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024168hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1bdo_A Acetyl-COA carboxylase; 99.7 5.1E-16 1.7E-20 116.0 11.1 76 183-261 5-80 (80)
2 2kcc_A Acetyl-COA carboxylase 99.5 1.2E-14 3.9E-19 110.5 7.8 73 183-266 6-78 (84)
3 1z6h_A Biotin/lipoyl attachmen 99.5 7.9E-14 2.7E-18 101.4 9.4 69 185-263 2-70 (72)
4 3crk_C Dihydrolipoyllysine-res 99.5 7.1E-14 2.4E-18 106.5 9.3 63 204-266 23-86 (87)
5 2dnc_A Pyruvate dehydrogenase 99.5 4.1E-14 1.4E-18 110.9 7.4 83 183-269 8-91 (98)
6 2dn8_A Acetyl-COA carboxylase 99.5 1.4E-13 4.9E-18 107.5 10.0 72 183-265 18-89 (100)
7 1dcz_A Transcarboxylase 1.3S s 99.5 3.4E-13 1.2E-17 99.3 10.0 70 182-261 8-77 (77)
8 2d5d_A Methylmalonyl-COA decar 99.5 3.5E-13 1.2E-17 98.1 9.8 69 183-261 6-74 (74)
9 1ghj_A E2, E2, the dihydrolipo 99.5 2.8E-13 9.6E-18 100.9 9.4 60 204-263 19-78 (79)
10 1y8o_B Dihydrolipoyllysine-res 99.4 7E-14 2.4E-18 115.2 5.7 81 183-267 28-109 (128)
11 1k8m_A E2 component of branche 99.4 2.9E-13 1E-17 104.9 8.3 61 204-264 22-82 (93)
12 3va7_A KLLA0E08119P; carboxyla 99.4 2.6E-13 8.9E-18 145.5 10.9 72 179-260 1164-1235(1236)
13 3n6r_A Propionyl-COA carboxyla 99.4 2.7E-13 9.2E-18 137.4 10.2 69 183-261 613-681 (681)
14 2dne_A Dihydrolipoyllysine-res 99.4 1.9E-13 6.5E-18 109.0 6.5 78 183-264 8-86 (108)
15 2l5t_A Lipoamide acyltransfera 99.4 4.5E-13 1.6E-17 99.1 7.8 64 188-261 13-76 (77)
16 2k7v_A Dihydrolipoyllysine-res 99.4 1.1E-13 3.6E-18 105.0 2.2 70 184-263 4-73 (85)
17 1iyu_A E2P, dihydrolipoamide a 99.4 9.9E-13 3.4E-17 97.9 7.1 61 204-264 16-76 (79)
18 3hbl_A Pyruvate carboxylase; T 99.4 9.9E-13 3.4E-17 140.1 9.9 73 181-263 1076-1148(1150)
19 2ejm_A Methylcrotonoyl-COA car 99.4 1.5E-12 5.2E-17 101.6 7.9 74 183-266 15-88 (99)
20 1zko_A Glycine cleavage system 99.4 1.9E-13 6.5E-18 113.8 2.9 57 209-265 54-117 (136)
21 1qjo_A Dihydrolipoamide acetyl 99.3 1.4E-12 4.9E-17 96.9 6.9 60 204-263 18-77 (80)
22 2jku_A Propionyl-COA carboxyla 99.3 1.8E-13 6.2E-18 106.0 1.8 69 183-261 26-94 (94)
23 1gjx_A Pyruvate dehydrogenase; 99.3 4.8E-13 1.6E-17 99.9 3.5 67 187-263 12-78 (81)
24 1pmr_A Dihydrolipoyl succinylt 99.3 1.3E-13 4.5E-18 103.2 -1.1 60 203-262 19-78 (80)
25 3u9t_A MCC alpha, methylcroton 99.3 3E-13 1E-17 137.0 0.1 71 183-263 603-673 (675)
26 2qf7_A Pyruvate carboxylase pr 99.1 4E-11 1.4E-15 128.0 6.2 69 183-261 1096-1164(1165)
27 3bg3_A Pyruvate carboxylase, m 99.1 2.1E-11 7.1E-16 124.6 3.0 69 183-261 650-718 (718)
28 3dva_I Dihydrolipoyllysine-res 99.1 1.4E-11 4.8E-16 119.1 0.0 77 184-264 4-80 (428)
29 1zy8_K Pyruvate dehydrogenase 99.0 3.1E-11 1.1E-15 108.1 0.0 75 184-262 5-80 (229)
30 3a7l_A H-protein, glycine clea 99.0 7.5E-10 2.6E-14 91.1 6.7 57 209-265 46-109 (128)
31 1onl_A Glycine cleavage system 99.0 5.1E-10 1.7E-14 92.1 5.6 57 209-265 45-108 (128)
32 2k32_A A; NMR {Campylobacter j 98.9 1.3E-09 4.6E-14 86.1 6.9 72 183-264 2-103 (116)
33 1hpc_A H protein of the glycin 98.9 1E-09 3.5E-14 90.7 5.8 57 209-265 45-108 (131)
34 3klr_A Glycine cleavage system 98.6 7E-08 2.4E-12 79.2 6.5 57 209-265 41-104 (125)
35 3mxu_A Glycine cleavage system 98.5 2.4E-07 8.2E-12 77.7 6.4 57 209-265 63-126 (143)
36 3tzu_A GCVH, glycine cleavage 98.4 9.5E-08 3.2E-12 79.6 3.4 55 209-263 58-119 (137)
37 3lnn_A Membrane fusion protein 98.2 4.5E-06 1.5E-10 76.6 8.5 75 180-264 55-206 (359)
38 3hgb_A Glycine cleavage system 98.1 3.3E-06 1.1E-10 71.6 5.9 56 209-264 68-130 (155)
39 2f1m_A Acriflavine resistance 98.0 2.1E-06 7.2E-11 76.2 3.7 73 182-264 22-167 (277)
40 3ne5_B Cation efflux system pr 98.0 8.6E-06 3E-10 77.3 8.0 71 182-262 121-240 (413)
41 3fpp_A Macrolide-specific effl 98.0 8.7E-06 3E-10 74.2 6.4 73 181-263 30-190 (341)
42 1vf7_A Multidrug resistance pr 97.8 1.2E-05 3.9E-10 75.0 4.7 73 181-263 42-173 (369)
43 3na6_A Succinylglutamate desuc 97.8 6.2E-05 2.1E-09 70.0 9.5 69 182-263 257-329 (331)
44 3cdx_A Succinylglutamatedesucc 97.6 0.00018 6.3E-09 67.2 9.3 71 181-264 266-340 (354)
45 3fmc_A Putative succinylglutam 97.6 0.00015 5.1E-09 68.5 8.6 69 181-262 289-363 (368)
46 2dn8_A Acetyl-COA carboxylase 97.5 4E-05 1.4E-09 59.2 2.7 46 217-262 5-50 (100)
47 4dk0_A Putative MACA; alpha-ha 97.3 1.3E-05 4.4E-10 73.7 -2.3 31 231-261 156-189 (369)
48 1f3z_A EIIA-GLC, glucose-speci 97.3 0.00052 1.8E-08 58.3 6.8 65 183-261 13-116 (161)
49 2gpr_A Glucose-permease IIA co 97.2 0.00055 1.9E-08 57.7 6.5 65 183-261 8-111 (154)
50 1ax3_A Iiaglc, glucose permeas 96.9 0.00047 1.6E-08 58.6 3.5 64 184-261 14-116 (162)
51 1z6h_A Biotin/lipoyl attachmen 96.9 0.001 3.4E-08 47.4 4.7 33 231-263 1-33 (72)
52 2d5d_A Methylmalonyl-COA decar 96.8 0.0018 6E-08 46.1 5.0 33 230-262 6-38 (74)
53 2qj8_A MLR6093 protein; struct 96.7 0.0054 1.8E-07 56.5 9.0 68 182-262 257-328 (332)
54 1dcz_A Transcarboxylase 1.3S s 96.6 0.0021 7.2E-08 46.4 4.6 33 230-262 9-41 (77)
55 2k32_A A; NMR {Campylobacter j 96.5 0.0027 9.3E-08 49.5 4.8 34 230-263 2-35 (116)
56 2kcc_A Acetyl-COA carboxylase 96.5 0.0014 4.9E-08 48.9 3.0 33 230-262 6-38 (84)
57 2f1m_A Acriflavine resistance 96.1 0.0058 2E-07 53.9 5.1 53 209-262 3-55 (277)
58 2ejm_A Methylcrotonoyl-COA car 95.9 0.006 2E-07 46.8 3.8 34 229-262 14-47 (99)
59 2jku_A Propionyl-COA carboxyla 95.9 0.0051 1.7E-07 46.8 3.2 33 230-262 26-58 (94)
60 2xha_A NUSG, transcription ant 95.8 0.0096 3.3E-07 52.0 5.1 51 202-258 19-98 (193)
61 1bdo_A Acetyl-COA carboxylase; 95.7 0.007 2.4E-07 44.1 3.2 33 230-262 5-44 (80)
62 3lnn_A Membrane fusion protein 95.6 0.0091 3.1E-07 54.5 4.3 48 216-263 43-91 (359)
63 3fpp_A Macrolide-specific effl 95.5 0.015 5.1E-07 52.6 5.5 55 208-263 11-65 (341)
64 3our_B EIIA, phosphotransferas 95.0 0.051 1.7E-06 47.1 6.9 65 183-261 35-138 (183)
65 2l5t_A Lipoamide acyltransfera 95.0 0.011 3.7E-07 42.8 2.3 30 234-263 12-41 (77)
66 2xhc_A Transcription antitermi 95.0 0.025 8.5E-07 53.4 5.3 51 202-258 59-138 (352)
67 1vf7_A Multidrug resistance pr 94.6 0.02 6.9E-07 52.9 3.6 44 218-262 33-76 (369)
68 1gjx_A Pyruvate dehydrogenase; 94.4 0.032 1.1E-06 40.6 3.7 31 232-262 10-40 (81)
69 3crk_C Dihydrolipoyllysine-res 94.4 0.054 1.8E-06 40.2 5.0 28 235-262 17-44 (87)
70 1k8m_A E2 component of branche 94.4 0.045 1.5E-06 41.5 4.5 27 236-262 17-43 (93)
71 2dne_A Dihydrolipoyllysine-res 94.3 0.039 1.3E-06 43.2 4.1 35 228-262 6-46 (108)
72 3ne5_B Cation efflux system pr 94.2 0.052 1.8E-06 51.2 5.4 53 211-263 102-156 (413)
73 1ghj_A E2, E2, the dihydrolipo 94.1 0.025 8.5E-07 41.1 2.4 29 234-262 12-40 (79)
74 4dk0_A Putative MACA; alpha-ha 94.0 0.017 5.9E-07 52.7 1.8 55 208-263 12-66 (369)
75 2k7v_A Dihydrolipoyllysine-res 93.8 0.0048 1.6E-07 45.9 -1.9 33 230-262 3-35 (85)
76 2xha_A NUSG, transcription ant 93.7 0.025 8.6E-07 49.3 2.2 51 202-258 77-157 (193)
77 3d4r_A Domain of unknown funct 93.5 0.093 3.2E-06 44.8 5.1 41 206-246 114-155 (169)
78 2dnc_A Pyruvate dehydrogenase 93.3 0.071 2.4E-06 40.9 3.9 27 236-262 20-46 (98)
79 1qjo_A Dihydrolipoamide acetyl 93.1 0.064 2.2E-06 38.8 3.2 27 237-263 14-40 (80)
80 1y8o_B Dihydrolipoyllysine-res 92.9 0.12 4.2E-06 41.9 4.9 27 236-262 40-66 (128)
81 2gpr_A Glucose-permease IIA co 92.8 0.081 2.8E-06 44.4 3.8 79 183-261 45-154 (154)
82 3n6r_A Propionyl-COA carboxyla 92.6 0.099 3.4E-06 52.9 4.8 34 229-262 612-645 (681)
83 1iyu_A E2P, dihydrolipoamide a 92.4 0.19 6.6E-06 36.2 4.9 35 182-226 41-75 (79)
84 2auk_A DNA-directed RNA polyme 91.6 0.25 8.5E-06 42.5 5.5 47 202-250 60-106 (190)
85 1pmr_A Dihydrolipoyl succinylt 90.7 0.041 1.4E-06 40.2 -0.3 28 235-262 14-41 (80)
86 3bg3_A Pyruvate carboxylase, m 89.5 0.23 7.8E-06 50.9 4.0 33 230-262 650-682 (718)
87 2bco_A Succinylglutamate desuc 89.0 0.53 1.8E-05 43.7 5.8 65 183-262 264-328 (350)
88 3hbl_A Pyruvate carboxylase; T 88.9 0.32 1.1E-05 52.1 4.7 33 230-262 1078-1110(1150)
89 2xhc_A Transcription antitermi 88.5 0.13 4.5E-06 48.4 1.3 51 202-258 117-197 (352)
90 3va7_A KLLA0E08119P; carboxyla 88.0 0.39 1.3E-05 51.9 4.7 33 230-262 1168-1200(1236)
91 3u9t_A MCC alpha, methylcroton 87.7 0.1 3.5E-06 52.7 0.0 33 230-262 603-635 (675)
92 2qf7_A Pyruvate carboxylase pr 86.1 0.55 1.9E-05 50.4 4.5 33 230-262 1096-1128(1165)
93 3lu0_D DNA-directed RNA polyme 85.2 1.1 3.6E-05 49.1 6.1 38 202-241 999-1036(1407)
94 1ax3_A Iiaglc, glucose permeas 79.1 0.97 3.3E-05 38.1 2.4 42 183-224 50-116 (162)
95 1f3z_A EIIA-GLC, glucose-speci 77.0 1.7 5.9E-05 36.5 3.4 42 183-224 50-116 (161)
96 3our_B EIIA, phosphotransferas 75.7 1.9 6.4E-05 37.2 3.3 25 201-225 115-139 (183)
97 3cdx_A Succinylglutamatedesucc 63.8 8.8 0.0003 35.3 5.4 37 227-264 265-301 (354)
98 3fmc_A Putative succinylglutam 63.4 6.6 0.00023 36.6 4.5 34 228-262 289-322 (368)
99 1uou_A Thymidine phosphorylase 59.2 13 0.00043 36.3 5.7 42 224-265 367-437 (474)
100 3dva_I Dihydrolipoyllysine-res 59.1 2 6.7E-05 41.2 0.0 36 182-227 45-80 (428)
101 3it5_A Protease LASA; metallop 58.6 5.6 0.00019 33.7 2.8 22 204-225 83-104 (182)
102 3na6_A Succinylglutamate desuc 58.5 9.9 0.00034 34.8 4.6 34 229-263 257-290 (331)
103 1zy8_K Pyruvate dehydrogenase 53.8 2.7 9.3E-05 37.0 0.0 33 183-225 47-80 (229)
104 3h5q_A PYNP, pyrimidine-nucleo 52.1 16 0.00054 35.2 5.0 39 226-265 335-404 (436)
105 1brw_A PYNP, protein (pyrimidi 51.5 18 0.00063 34.7 5.4 41 225-265 331-402 (433)
106 2dsj_A Pyrimidine-nucleoside ( 49.0 19 0.00065 34.6 5.0 39 226-265 325-394 (423)
107 3lu0_D DNA-directed RNA polyme 48.3 8.7 0.0003 42.1 2.8 22 202-223 1103-1124(1407)
108 3csq_A Morphogenesis protein 1 47.3 8.8 0.0003 35.3 2.3 23 204-226 249-271 (334)
109 3nyy_A Putative glycyl-glycine 46.7 8.6 0.00029 34.2 2.1 20 207-226 183-202 (252)
110 1zko_A Glycine cleavage system 45.6 4.8 0.00016 32.8 0.2 33 230-262 37-70 (136)
111 3tuf_B Stage II sporulation pr 44.3 8.7 0.0003 34.2 1.7 22 205-226 134-155 (245)
112 2qj8_A MLR6093 protein; struct 42.6 25 0.00085 31.8 4.6 34 230-264 258-291 (332)
113 1qwy_A Peptidoglycan hydrolase 40.1 12 0.00041 34.3 2.0 22 205-226 238-259 (291)
114 2auk_A DNA-directed RNA polyme 39.3 19 0.00066 30.5 3.1 23 202-224 164-186 (190)
115 2hsi_A Putative peptidase M23; 39.0 13 0.00043 33.7 2.0 22 205-226 231-252 (282)
116 3tuf_B Stage II sporulation pr 37.9 26 0.00089 31.0 3.8 22 242-263 134-155 (245)
117 2tpt_A Thymidine phosphorylase 37.7 20 0.00068 34.5 3.2 41 225-265 336-407 (440)
118 2gu1_A Zinc peptidase; alpha/b 36.0 15 0.00051 33.9 2.0 21 206-226 284-304 (361)
119 3d4r_A Domain of unknown funct 35.8 47 0.0016 28.2 4.8 47 210-267 92-138 (169)
120 3nyy_A Putative glycyl-glycine 35.0 31 0.0011 30.6 3.8 22 242-263 180-202 (252)
121 1hpc_A H protein of the glycin 35.0 23 0.00077 28.5 2.7 33 230-262 28-61 (131)
122 1yw4_A Succinylglutamate desuc 34.8 8.7 0.0003 35.3 0.2 37 206-242 277-318 (341)
123 3vr4_A V-type sodium ATPase ca 32.8 44 0.0015 33.5 4.9 41 207-249 130-173 (600)
124 2lmc_B DNA-directed RNA polyme 31.9 18 0.00062 27.1 1.5 20 202-221 63-82 (84)
125 1onl_A Glycine cleavage system 30.3 34 0.0012 27.3 3.0 33 230-262 28-61 (128)
126 2gu1_A Zinc peptidase; alpha/b 29.6 42 0.0014 30.9 3.9 21 242-262 283-303 (361)
127 2hsi_A Putative peptidase M23; 29.4 33 0.0011 30.9 3.1 62 183-263 191-252 (282)
128 3a7l_A H-protein, glycine clea 29.4 36 0.0012 27.1 3.0 33 230-262 29-62 (128)
129 2dsj_A Pyrimidine-nucleoside ( 28.9 48 0.0016 31.8 4.2 24 204-227 370-393 (423)
130 1brw_A PYNP, protein (pyrimidi 28.8 47 0.0016 31.8 4.2 24 204-227 378-401 (433)
131 3tr3_A BOLA; cellular processe 28.5 88 0.003 23.1 4.8 34 83-119 2-38 (82)
132 3gqb_A V-type ATP synthase alp 27.3 78 0.0027 31.6 5.6 37 207-243 122-160 (578)
133 3h5q_A PYNP, pyrimidine-nucleo 27.0 44 0.0015 32.1 3.6 21 204-224 381-401 (436)
134 1o4u_A Type II quinolic acid p 26.9 31 0.001 31.3 2.4 21 205-225 74-94 (285)
135 1x1o_A Nicotinate-nucleotide p 26.3 34 0.0011 30.9 2.6 21 205-225 75-95 (286)
136 1uou_A Thymidine phosphorylase 26.2 57 0.002 31.7 4.3 24 204-227 413-436 (474)
137 1qpo_A Quinolinate acid phosph 25.2 34 0.0011 30.9 2.3 20 205-224 74-93 (284)
138 3tqv_A Nicotinate-nucleotide p 24.4 39 0.0013 30.8 2.6 21 204-224 77-97 (287)
139 1iv0_A Hypothetical protein; r 24.3 18 0.00062 27.5 0.3 13 12-24 2-14 (98)
140 2tpt_A Thymidine phosphorylase 23.8 48 0.0016 31.8 3.2 24 204-227 383-406 (440)
141 3l0g_A Nicotinate-nucleotide p 23.4 41 0.0014 30.9 2.5 20 205-224 87-106 (300)
142 3mfy_A V-type ATP synthase alp 22.5 95 0.0032 31.1 5.1 37 207-243 123-162 (588)
143 3paj_A Nicotinate-nucleotide p 21.8 41 0.0014 31.1 2.2 21 205-225 111-131 (320)
144 3gnn_A Nicotinate-nucleotide p 21.7 41 0.0014 30.7 2.2 21 205-225 89-109 (298)
145 3it5_A Protease LASA; metallop 21.4 75 0.0026 26.6 3.7 56 183-262 49-104 (182)
146 1qap_A Quinolinic acid phospho 20.9 44 0.0015 30.3 2.2 22 204-225 87-108 (296)
147 1qpo_A Quinolinate acid phosph 20.7 78 0.0027 28.4 3.8 25 238-262 70-94 (284)
148 2b7n_A Probable nicotinate-nuc 20.2 49 0.0017 29.4 2.3 20 206-225 62-81 (273)
No 1
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=99.67 E-value=5.1e-16 Score=115.95 Aligned_cols=76 Identities=36% Similarity=0.557 Sum_probs=71.9
Q ss_pred eEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEe
Q 024168 183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVIL 261 (271)
Q Consensus 183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~ 261 (271)
..|+||+.|.+++.+. +..+|++++||.|++||+|+.||+||+..+|+||++|+|.++++++|+.|..|++||.|.
T Consensus 5 ~~v~a~~~G~v~~~~~---~~~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~V~~G~~L~~i~ 80 (80)
T 1bdo_A 5 HIVRSPMVGTFYRTPS---PDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE 80 (80)
T ss_dssp EEEECSSSEEEESSSS---TTSCCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred eEEEcCCCeEEEEecc---cCcccccCCcCEECCCCEEEEEEeccEEEEEECCCCEEEEEEEcCCCCEECCCCEEEEEC
Confidence 4699999999998764 789999999999999999999999999999999999999999999999999999999874
No 2
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=99.54 E-value=1.2e-14 Score=110.49 Aligned_cols=73 Identities=16% Similarity=0.190 Sum_probs=68.3
Q ss_pred eEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168 183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILP 262 (271)
Q Consensus 183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~ 262 (271)
..|+||+.|+++. |+|++||.|++||+|+.||+||+..+|+||++|+|.+++ +.|+.|..|++|+.|.+
T Consensus 6 ~~v~a~~~G~v~~----------~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~-~~G~~V~~G~~l~~i~~ 74 (84)
T 2kcc_A 6 TVLRSPSAGKLTQ----------YTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIK-RPGAVLEAGCVVARLEL 74 (84)
T ss_dssp TEECCSSSCCEEE----------ESSCTTEEECTTCEEEEEECSSCEEEEECSSSEEEEECS-CTTCCCCTTCCCEEEEC
T ss_pred ceEECCCCEEEEE----------EECCCCCEECCCCEEEEEEecceeEEEECCCCEEEEEEc-CCCCEECCCCEEEEEeC
Confidence 3699999999874 789999999999999999999999999999999999999 99999999999999998
Q ss_pred CCCC
Q 024168 263 SFPG 266 (271)
Q Consensus 263 ~~~~ 266 (271)
.+|.
T Consensus 75 ~~~~ 78 (84)
T 2kcc_A 75 DDLE 78 (84)
T ss_dssp SCSC
T ss_pred CChh
Confidence 7764
No 3
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=99.51 E-value=7.9e-14 Score=101.38 Aligned_cols=69 Identities=28% Similarity=0.431 Sum_probs=65.2
Q ss_pred EeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEecC
Q 024168 185 LESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPS 263 (271)
Q Consensus 185 V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~ 263 (271)
|+||+.|++.. |++++||.|++||+|+.||+++...+|+||++|+|.+++++.|+.|..|++|+.|.+.
T Consensus 2 v~a~~~G~v~~----------~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~v~~G~~V~~G~~l~~i~~~ 70 (72)
T 1z6h_A 2 VSIQMAGNLWK----------VHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDFVNEGDVLLELSNS 70 (72)
T ss_dssp EECCSSEEEEE----------ECCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEESSCTTCEECTTCEEEEEGGG
T ss_pred EECcccEEEEE----------EEcCCcCEECCCCEEEEEECCccEEEEECCCCcEEEEEecCCCCEECCCCEEEEEeCC
Confidence 78999999864 7899999999999999999999999999999999999999999999999999999764
No 4
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=99.50 E-value=7.1e-14 Score=106.51 Aligned_cols=63 Identities=27% Similarity=0.333 Sum_probs=59.0
Q ss_pred CCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCC-cccCCCeEEEEecCCCC
Q 024168 204 APPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGD-PIGYGDPLIVILPSFPG 266 (271)
Q Consensus 204 ~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd-~V~~Gq~L~~I~~~~~~ 266 (271)
..|+|++||.|++||+||.||+||+.++|+||++|+|.+++++.|+ .|..|++|++|.....+
T Consensus 23 ~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~~V~~G~~l~~i~~~~~~ 86 (87)
T 3crk_C 23 QRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVEKEAD 86 (87)
T ss_dssp EEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCCEETTCEEEEEESSSTT
T ss_pred EEEEcCCCCEEcCCCEEEEEECCcccceeecCcCcEEEEEEECCCCeEECCCCEEEEEEcccCC
Confidence 3589999999999999999999999999999999999999999999 89999999999876544
No 5
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=4.1e-14 Score=110.92 Aligned_cols=83 Identities=20% Similarity=0.240 Sum_probs=69.6
Q ss_pred eEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcc-cCCCeEEEEe
Q 024168 183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPI-GYGDPLIVIL 261 (271)
Q Consensus 183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V-~~Gq~L~~I~ 261 (271)
..|+.|..|..... |....|+|++||.|++||+||.||+||+.++|+||++|+|.+++++.|+.| ..|++|++|.
T Consensus 8 ~~i~~P~lg~~~~~----G~i~~~~v~~Gd~V~~G~~L~~ie~~K~~~~i~Ap~~G~v~~i~v~~G~~Vv~~G~~l~~i~ 83 (98)
T 2dnc_A 8 IKILMPSLSPTMEE----GNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIV 83 (98)
T ss_dssp EEEECCCCSTTCSE----ECEEEESSCTTCEECTTSEEEEEECSSCEEEEECSSCEEEEECSSCTTCCCEESSCEEEEEE
T ss_pred EEEECCCCCCCCcc----EEEEEEEcCCCCEeCCCCEEEEEEcccceeEEeCCCCEEEEEEEeCCCCEEcCCCCEEEEEe
Confidence 45777765532211 233569999999999999999999999999999999999999999999999 9999999999
Q ss_pred cCCCCCCC
Q 024168 262 PSFPGIKL 269 (271)
Q Consensus 262 ~~~~~~~~ 269 (271)
....++..
T Consensus 84 ~~~~~~~~ 91 (98)
T 2dnc_A 84 EEGEDWKH 91 (98)
T ss_dssp CTTSCSSC
T ss_pred cCCCcccc
Confidence 87666543
No 6
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=1.4e-13 Score=107.48 Aligned_cols=72 Identities=17% Similarity=0.265 Sum_probs=67.3
Q ss_pred eEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168 183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILP 262 (271)
Q Consensus 183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~ 262 (271)
..|.||+.|++.+ |++++||.|++||+|+.||+||+..+|+||++|+|. ++++.|+.|..|++|++|.+
T Consensus 18 ~~v~a~~~G~v~~----------~~v~~Gd~V~~Gq~L~~le~~k~~~~i~Ap~~G~V~-~~v~~G~~V~~G~~l~~i~~ 86 (100)
T 2dn8_A 18 TVLRSPSAGKLTQ----------YTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVK-YIKRPGAVLEAGCVVARLEL 86 (100)
T ss_dssp TEEECSSCEEEEE----------ESSCTTEEECTTCEEEEEEETTEEEEEECSSSEEEE-ECSCTTCEECSSCEEEEECC
T ss_pred cEEeCCCCEEEEE----------EEcCCcCEECCCCEEEEEEecceEEEEEcCCCEEEE-EEeCCCCEECCCCEEEEEEc
Confidence 4699999999974 789999999999999999999999999999999999 99999999999999999987
Q ss_pred CCC
Q 024168 263 SFP 265 (271)
Q Consensus 263 ~~~ 265 (271)
.++
T Consensus 87 ~~~ 89 (100)
T 2dn8_A 87 DDP 89 (100)
T ss_dssp SCS
T ss_pred CCc
Confidence 554
No 7
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=99.46 E-value=3.4e-13 Score=99.33 Aligned_cols=70 Identities=30% Similarity=0.356 Sum_probs=65.6
Q ss_pred ceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEe
Q 024168 182 LVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVIL 261 (271)
Q Consensus 182 ~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~ 261 (271)
...|.||+.|.+.+ +++++||.|++||+|+.|+.+++..+|+||++|+|.++.++.|+.|..|++|+.|+
T Consensus 8 ~~~v~a~~~G~v~~----------~~v~~G~~V~~G~~L~~l~~~~~~~~i~Ap~~G~v~~~~~~~G~~v~~G~~l~~i~ 77 (77)
T 1dcz_A 8 EGEIPAPLAGTVSK----------ILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKIG 77 (77)
T ss_dssp SSEEEBSSSCEEEE----------ECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTCBCCBTSEEEEEC
T ss_pred CeEEECCCCEEEEE----------EEcCCcCEEcCCCEEEEEEccceeEEEECCCCEEEEEEecCCcCEECCCCEEEEEC
Confidence 35799999999964 67999999999999999999999999999999999999999999999999999874
No 8
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=99.46 E-value=3.5e-13 Score=98.08 Aligned_cols=69 Identities=32% Similarity=0.406 Sum_probs=64.9
Q ss_pred eEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEe
Q 024168 183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVIL 261 (271)
Q Consensus 183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~ 261 (271)
..|.||+.|.+.. |++++||.|++||+|+.|+++++..+|+||++|+|.+++++.|+.|..|++|+.|+
T Consensus 6 ~~v~a~~~G~v~~----------~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~ 74 (74)
T 2d5d_A 6 NVVSAPMPGKVLR----------VLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEAVDTGQPLIELG 74 (74)
T ss_dssp CEEECSSCEEEEE----------ECCCTTCEECTTCEEEEEEETTEEEEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred eEEecCCCEEEEE----------EEcCCCCEeCCCCEEEEEecccceEEEeCCCCEEEEEEEcCCcCEECCCCEEEEEC
Confidence 4699999999864 67999999999999999999999999999999999999999999999999999874
No 9
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=99.46 E-value=2.8e-13 Score=100.88 Aligned_cols=60 Identities=18% Similarity=0.254 Sum_probs=57.4
Q ss_pred CCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEecC
Q 024168 204 APPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPS 263 (271)
Q Consensus 204 ~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~ 263 (271)
..|+|++||.|++||+|+.||+||+..+|+||++|+|.+++++.|+.|..|++|++|.+.
T Consensus 19 ~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~~ 78 (79)
T 1ghj_A 19 ATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKLTEG 78 (79)
T ss_dssp CCCSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTCEECTTCEEEEECCC
T ss_pred EEEEcCCCCEECCCCEEEEEEccceeEEEEcCCCEEEEEEEcCCcCEECCCCEEEEEecC
Confidence 469999999999999999999999999999999999999999999999999999999753
No 10
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=99.44 E-value=7e-14 Score=115.24 Aligned_cols=81 Identities=25% Similarity=0.284 Sum_probs=68.4
Q ss_pred eEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCC-cccCCCeEEEEe
Q 024168 183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGD-PIGYGDPLIVIL 261 (271)
Q Consensus 183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd-~V~~Gq~L~~I~ 261 (271)
..|+.|..|..... |....|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+ .|..|++|++|.
T Consensus 28 ~~i~~P~lG~~~~~----G~V~~~~V~~Gd~V~~Gd~L~~iEa~K~~~~I~Ap~~G~V~~i~v~~Gd~~V~~G~~L~~i~ 103 (128)
T 1y8o_B 28 MQVLLPALSPTMTM----GTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIV 103 (128)
T ss_dssp EEEECCCSSTTCSE----EEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCSEETTCEEEEEE
T ss_pred eeEEcCCCCCCccc----EEEEEEecCCCCEecCCCEEEEEEcCcceeEEeCCCCeEEEEEEeCCCCeeecCCCEEEEEe
Confidence 56788876543222 1235699999999999999999999999999999999999999999998 899999999998
Q ss_pred cCCCCC
Q 024168 262 PSFPGI 267 (271)
Q Consensus 262 ~~~~~~ 267 (271)
....++
T Consensus 104 ~~~~~~ 109 (128)
T 1y8o_B 104 EKEADI 109 (128)
T ss_dssp SSGGGG
T ss_pred cCccch
Confidence 765443
No 11
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=99.43 E-value=2.9e-13 Score=104.86 Aligned_cols=61 Identities=23% Similarity=0.232 Sum_probs=58.0
Q ss_pred CCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEecCC
Q 024168 204 APPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPSF 264 (271)
Q Consensus 204 ~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~~ 264 (271)
..|+|++||.|++||+|+.||+||+..+|+||++|+|.+++++.|+.|..|++|++|.+..
T Consensus 22 ~~~~v~~Gd~V~~G~~l~~ie~~K~~~~i~Ap~~G~V~~i~v~~G~~V~~G~~l~~i~~~~ 82 (93)
T 1k8m_A 22 KEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDIETEA 82 (93)
T ss_dssp EEECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSCEECTTSEEEEEECSC
T ss_pred EEEEcCCcCEECCCCEEEEEEcCCcEEEEEcCCCEEEEEEEcCCCCEeCCCCEEEEEecCC
Confidence 3589999999999999999999999999999999999999999999999999999998654
No 12
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=99.43 E-value=2.6e-13 Score=145.46 Aligned_cols=72 Identities=31% Similarity=0.449 Sum_probs=68.3
Q ss_pred CCCceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEE
Q 024168 179 DEGLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLI 258 (271)
Q Consensus 179 ~~~~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~ 258 (271)
+.+...|+|||+|+|+. |+|++||.|++||+|++||+||++++|+||++|+|.+|++++||.|++||+|+
T Consensus 1164 ~~~~~~v~ap~~G~v~~----------~~v~~Gd~V~~g~~l~~iEamK~~~~v~ap~~G~v~~i~v~~G~~V~~G~~l~ 1233 (1236)
T 3va7_A 1164 PDDAELLYSEYTGRFWK----------PVAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNGDMVEAGDLVA 1233 (1236)
T ss_dssp CTTCEEEECSSCEEEEE----------ESSCTTCEECSSCEEEEEEETTEEEEEECSSCEEEEEECCCTTCEECTTCEEE
T ss_pred CCCCcEEeCCCcEEEEE----------EEcCCCCEECCCCEEEEEEecCcceeEecCCCeEEEEEEeCCcCEeCCCCEEE
Confidence 44567899999999984 89999999999999999999999999999999999999999999999999999
Q ss_pred EE
Q 024168 259 VI 260 (271)
Q Consensus 259 ~I 260 (271)
.|
T Consensus 1234 ~i 1235 (1236)
T 3va7_A 1234 VI 1235 (1236)
T ss_dssp EE
T ss_pred Ee
Confidence 87
No 13
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=99.43 E-value=2.7e-13 Score=137.43 Aligned_cols=69 Identities=28% Similarity=0.392 Sum_probs=66.1
Q ss_pred eEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEe
Q 024168 183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVIL 261 (271)
Q Consensus 183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~ 261 (271)
..|+|||+|+++. |+|++||.|++||+|++||+|||+++|+||.+|+|.+|++++|+.|..|++|++|+
T Consensus 613 ~~v~ap~~G~v~~----------~~v~~Gd~V~~g~~l~~iEamKm~~~i~ap~~G~v~~i~~~~G~~v~~g~~l~~i~ 681 (681)
T 3n6r_A 613 KMLLCPMPGLIVK----------VDVEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKINASAGNSLAVDDVIMEFE 681 (681)
T ss_dssp SEEECCSCEEEEE----------ECCCTTCEECTTCEEEEEECSSCEEEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred CeEECCCcEEEEE----------EEeCCCCEEcCCCEEEEEEecCceeEEECCCCeEEEEEEeCCcCEeCCCCEEEEEC
Confidence 5799999999974 88999999999999999999999999999999999999999999999999999884
No 14
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=99.42 E-value=1.9e-13 Score=109.03 Aligned_cols=78 Identities=19% Similarity=0.195 Sum_probs=65.3
Q ss_pred eEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCC-cccCCCeEEEEe
Q 024168 183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGD-PIGYGDPLIVIL 261 (271)
Q Consensus 183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd-~V~~Gq~L~~I~ 261 (271)
..|+.|..|..... |....|+|++||.|++||+||+||+||+.++|+||++|+|.+++++.|+ .|..|++|++|.
T Consensus 8 ~~i~~P~lg~~~~~----G~v~~~~v~~Gd~V~~G~~L~~iE~~K~~~~i~Ap~~G~V~~i~v~~G~~~V~~G~~l~~i~ 83 (108)
T 2dne_A 8 QKVPLPSLSPTMQA----GTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTRDVPIGAIICITV 83 (108)
T ss_dssp EEEECCCCSSSCCE----EEEEECSSCTTCEECTTSEEEEEECSSCEEEEECSSSEEEEECSSCTTCCSEETTCEEEEEE
T ss_pred eEEecCCCCCCccc----EEEEEEEcCCCCEecCCCEEEEEEcCcceeEEeCCCCEEEEEEEeCCCCeeecCCCEEEEEe
Confidence 45666665532211 1234699999999999999999999999999999999999999999999 899999999998
Q ss_pred cCC
Q 024168 262 PSF 264 (271)
Q Consensus 262 ~~~ 264 (271)
...
T Consensus 84 ~~~ 86 (108)
T 2dne_A 84 GKP 86 (108)
T ss_dssp SCH
T ss_pred cCc
Confidence 653
No 15
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=99.41 E-value=4.5e-13 Score=99.13 Aligned_cols=64 Identities=25% Similarity=0.294 Sum_probs=59.7
Q ss_pred CcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEe
Q 024168 188 PKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVIL 261 (271)
Q Consensus 188 P~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~ 261 (271)
|+.|.+. .|++++||.|++||+|+.||++|+..+|+||++|+|.+++++.|+.|..|++|++|.
T Consensus 13 ~~~G~v~----------~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~ 76 (77)
T 2l5t_A 13 VTEGEIV----------RWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQVVPVGSTLLQID 76 (77)
T ss_dssp CCCEEEE----------ECSCCTTCEECSCCCCCEEESSSCEEECCCCCCEEEEEECCCTTCEECSCSEEEEEE
T ss_pred CccEEEE----------EEEeCCCCEECCCCEEEEEEccceEEEEECCCCEEEEEEEeCCcCEECCCCEEEEEE
Confidence 4667765 489999999999999999999999999999999999999999999999999999985
No 16
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=99.37 E-value=1.1e-13 Score=104.99 Aligned_cols=70 Identities=17% Similarity=0.198 Sum_probs=64.4
Q ss_pred EEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEecC
Q 024168 184 ILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPS 263 (271)
Q Consensus 184 ~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~ 263 (271)
.|++|..|++ ..|++++||.|++||+|+.||+||+..+|+||++|+|.+++++.|+.|..|++|+.|...
T Consensus 4 ~i~~p~~G~v----------~~~~v~~Gd~V~~G~~L~~ie~~k~~~~i~Ap~~G~V~~~~v~~G~~V~~G~~l~~i~~~ 73 (85)
T 2k7v_A 4 EVNVPDIVEV----------TEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVE 73 (85)
T ss_dssp CCCCCSCCCC----------CSCCCSSSCCCCCSSSCCCCSCCCSEEEEECSSCBCCCEECSCTTCCBCTTSEEEEEECC
T ss_pred EEECCCeEEE----------EEEEcCCCCEEcCCCEEEEEEccccEEEEECCCCEEEEEEEeCCCCEECCCCEEEEEEcC
Confidence 3667777765 468999999999999999999999999999999999999999999999999999999864
No 17
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=99.37 E-value=9.9e-13 Score=97.88 Aligned_cols=61 Identities=25% Similarity=0.260 Sum_probs=58.1
Q ss_pred CCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEecCC
Q 024168 204 APPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPSF 264 (271)
Q Consensus 204 ~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~~ 264 (271)
..|+|++||.|++||+|+.||+||+..+|+||++|+|.+++++.|+.|..|++|+.|.+..
T Consensus 16 ~~~~v~~Gd~V~~G~~l~~le~~k~~~~i~Ap~~G~v~~~~v~~G~~V~~g~~l~~i~~~~ 76 (79)
T 1iyu_A 16 IELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEPAA 76 (79)
T ss_dssp EEECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTCEEETTSEEEEEECCC
T ss_pred EEEecCCCCEEcCCCEEEEEEccceEEEEECCCCEEEEEEEeCCCCEECCCCEEEEEecCC
Confidence 4689999999999999999999999999999999999999999999999999999998754
No 18
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=99.37 E-value=9.9e-13 Score=140.15 Aligned_cols=73 Identities=23% Similarity=0.276 Sum_probs=67.6
Q ss_pred CceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEE
Q 024168 181 GLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVI 260 (271)
Q Consensus 181 ~~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I 260 (271)
+...|.|||.|+++. |+|++||.|++||+|++||+||++++|+||++|+|.+|++++|+.|..|++|+.|
T Consensus 1076 ~~~~v~ap~~G~v~~----------~~v~~Gd~V~~G~~l~~ieamK~~~~i~ap~~G~v~~i~v~~G~~V~~g~~l~~i 1145 (1150)
T 3hbl_A 1076 NPSHIGAQMPGSVTE----------VKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDTIATGDLLIEI 1145 (1150)
T ss_dssp CSSEEECSSSEEEEE----------ECCCTTCEECTTCEEEEEESSSCEEEEECSSSEEEEEECCCTTCEECTTBEEEEE
T ss_pred CCceeecCceEEEEE----------EEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCEEEEE
Confidence 335799999999974 8999999999999999999999999999999999999999999999999999999
Q ss_pred ecC
Q 024168 261 LPS 263 (271)
Q Consensus 261 ~~~ 263 (271)
++.
T Consensus 1146 ~~~ 1148 (1150)
T 3hbl_A 1146 EKA 1148 (1150)
T ss_dssp C--
T ss_pred ecC
Confidence 864
No 19
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=99.36 E-value=1.5e-12 Score=101.58 Aligned_cols=74 Identities=20% Similarity=0.224 Sum_probs=68.3
Q ss_pred eEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168 183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILP 262 (271)
Q Consensus 183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~ 262 (271)
..|.+|+.|.+.. |++++||.|++||+|+.||++|+..+|+||++|+|.+++++.|+.|..|++|+.|..
T Consensus 15 ~~v~a~~~G~v~~----------~~v~~Gd~V~~Gq~L~~ie~~~~~~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~i~~ 84 (99)
T 2ejm_A 15 GGPLAPMTGTIEK----------VFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGAQANRHTPLVEFEE 84 (99)
T ss_dssp SSCBCSSSEEEEE----------ECCCTTEEECSSCEEEEEESSSSEEEEECSSCEEEEEESCCTTEEECTTCBCEEECC
T ss_pred eEEecCCCEEEEE----------EECCCCCEECCCCEEEEEEccceeEEEECCCCeEEEEEEcCCCCEECCCCEEEEEEC
Confidence 3589999999864 789999999999999999999999999999999999999999999999999999987
Q ss_pred CCCC
Q 024168 263 SFPG 266 (271)
Q Consensus 263 ~~~~ 266 (271)
....
T Consensus 85 ~~~~ 88 (99)
T 2ejm_A 85 EESD 88 (99)
T ss_dssp CCSC
T ss_pred CCcc
Confidence 6553
No 20
>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A
Probab=99.35 E-value=1.9e-13 Score=113.79 Aligned_cols=57 Identities=19% Similarity=0.343 Sum_probs=55.3
Q ss_pred CCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEE---ecCCCCccc---CCC-eEEEEecCCC
Q 024168 209 KEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKI---LRKDGDPIG---YGD-PLIVILPSFP 265 (271)
Q Consensus 209 ~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~I---lv~~Gd~V~---~Gq-~L~~I~~~~~ 265 (271)
++||.|++||+||+||+||++++|.||++|+|++| ++++|+.|+ ||+ +||+|++.++
T Consensus 54 ~vGd~V~~Gd~l~~VEs~K~~~eI~aPvsG~V~eiN~~l~~~p~~Vn~dp~g~GwL~~i~~~~~ 117 (136)
T 1zko_A 54 EVGREVKKGEVVASIESVKAAADVYAPLSGKIVEVNEKLDTEPELINKDPEGEGWLFKMEISDE 117 (136)
T ss_dssp CTTCEECTTCEEEEEEESSCEEEEECSSCEEEEEECGGGGTCTTHHHHCTTTTTCCEEEEESCG
T ss_pred CCCCEEeCCCEEEEEEEccEeEEEecCCCeEEEEEehhhccCccCcccCCCCCeEEEEEEECCH
Confidence 99999999999999999999999999999999999 999999999 999 9999998765
No 21
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=99.35 E-value=1.4e-12 Score=96.92 Aligned_cols=60 Identities=18% Similarity=0.207 Sum_probs=57.6
Q ss_pred CCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEecC
Q 024168 204 APPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPS 263 (271)
Q Consensus 204 ~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~ 263 (271)
..|++++||.|++||+|+.||++|+..+|+||++|+|.+++++.|+.|..|++|+.|.+.
T Consensus 18 ~~~~v~~G~~V~~G~~l~~ie~~~~~~~i~Ap~~G~v~~~~v~~G~~V~~G~~l~~i~~~ 77 (80)
T 1qjo_A 18 TEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVE 77 (80)
T ss_dssp EECCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTCEECTTCCCEEEESC
T ss_pred EEEEcCCCCEECCCCEEEEEEcCCceEEEeCCCCEEEEEEecCCCCEECCCCEEEEEEcc
Confidence 458999999999999999999999999999999999999999999999999999999875
No 22
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}
Probab=99.34 E-value=1.8e-13 Score=106.03 Aligned_cols=69 Identities=30% Similarity=0.457 Sum_probs=30.0
Q ss_pred eEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEe
Q 024168 183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVIL 261 (271)
Q Consensus 183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~ 261 (271)
..|+||+.|.+.. |++++||.|++||+|+.||++|+..+|+||++|+|.+++++.|+.|..|++|+.|+
T Consensus 26 ~~v~a~~~G~v~~----------~~v~~Gd~V~~Gq~L~~ie~~k~~~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~ie 94 (94)
T 2jku_A 26 SVLRSPMPGVVVA----------VSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGDTVGEGDLLVELE 94 (94)
T ss_dssp CCCCCSSSCEEEE----------ECCCTTCCCCTTCCCEEEEC------------------------------------
T ss_pred eEEECCCCEEEEE----------EECCCCCEEcCCCEEEEEecccccEEEECCCCEEEEEEcCCCcCEECCCCEEEEEC
Confidence 4589999999864 78999999999999999999999999999999999999999999999999999874
No 23
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=99.33 E-value=4.8e-13 Score=99.90 Aligned_cols=67 Identities=18% Similarity=0.211 Sum_probs=61.5
Q ss_pred CCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEecC
Q 024168 187 SPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPS 263 (271)
Q Consensus 187 sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~ 263 (271)
+++.|.+. .|++++||.|++||+|+.||+||+..+|+||++|+|.+++++.|+.|..|++|++|.+.
T Consensus 12 ~~~~G~i~----------~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~~ 78 (81)
T 1gjx_A 12 GHENVDII----------AVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEAE 78 (81)
T ss_dssp SCSSEEEE----------EECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCEECSSSCCCEECCS
T ss_pred CCCcEEEE----------EEEcCCCCEECCCCEEEEEEeCCcEEEEECCCCEEEEEEecCCCCEeCCCCEEEEEEec
Confidence 35677664 47899999999999999999999999999999999999999999999999999999864
No 24
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=99.30 E-value=1.3e-13 Score=103.22 Aligned_cols=60 Identities=18% Similarity=0.116 Sum_probs=57.4
Q ss_pred CCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168 203 RAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILP 262 (271)
Q Consensus 203 ~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~ 262 (271)
...|+|++||.|++||+|+.||+||+..+|+||++|+|.+++++.|+.|..|++|++|.+
T Consensus 19 v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~G~~l~~i~~ 78 (80)
T 1pmr_A 19 VATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRLRE 78 (80)
T ss_dssp CCBCCCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTCEECSSSEEEBCCC
T ss_pred EEEEECCCcCEECCCCEEEEEEccceEEEEECCCCEEEEEEEcCCcCEECCCCEEEEEec
Confidence 357999999999999999999999999999999999999999999999999999999875
No 25
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=99.28 E-value=3e-13 Score=136.99 Aligned_cols=71 Identities=25% Similarity=0.301 Sum_probs=0.0
Q ss_pred eEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168 183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILP 262 (271)
Q Consensus 183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~ 262 (271)
..|+|||.|+++ .|+|++||.|++||+|++||+|||.++|+||.+|+|.+|++++|+.|..|++|++|++
T Consensus 603 ~~v~ap~~G~v~----------~~~v~~Gd~V~~g~~l~~iEamK~~~~i~ap~~G~v~~i~~~~G~~v~~g~~l~~i~~ 672 (675)
T 3u9t_A 603 GGLSAPMNGSIV----------RVLVEPGQTVEAGATLVVLEAMKMEHSIRAPHAGVVKALYCSEGELVEEGTPLVELDE 672 (675)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CeEECCCCEEEE----------EEEeCCCCEEcCCCEEEEEEecceeEEEECCCCeEEEEEEeCCcCCcCCCCEEEEEec
Confidence 469999999996 4899999999999999999999999999999999999999999999999999999986
Q ss_pred C
Q 024168 263 S 263 (271)
Q Consensus 263 ~ 263 (271)
+
T Consensus 673 ~ 673 (675)
T 3u9t_A 673 N 673 (675)
T ss_dssp -
T ss_pred C
Confidence 4
No 26
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=99.12 E-value=4e-11 Score=127.98 Aligned_cols=69 Identities=30% Similarity=0.381 Sum_probs=59.3
Q ss_pred eEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEe
Q 024168 183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVIL 261 (271)
Q Consensus 183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~ 261 (271)
..|.|||.|+++. |+|++||.|++||+|++||+||+.++|+||.+|+|.+++++.|+.|..|++|++|+
T Consensus 1096 ~~v~ap~~G~v~~----------~~v~~Gd~V~~G~~l~~iEamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~l~~i~ 1164 (1165)
T 2qf7_A 1096 AHVGAPMPGVISR----------VFVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEVLVKAGDQIDAKDLLAVYG 1164 (1165)
T ss_dssp TEEECSSCEEEEE----------ECCSSCCCC---CEEEEEEC---CEEEECCSSCCCCEECCCSSCEECTTBEEEEC-
T ss_pred ceeeCCCCeEEEE----------EEcCCcCEeCCCCEEEEEEcccceEEEEcCCCEEEEEEEeCCCCEECCCCEEEEec
Confidence 4699999999974 78999999999999999999999999999999999999999999999999999875
No 27
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=99.10 E-value=2.1e-11 Score=124.63 Aligned_cols=69 Identities=20% Similarity=0.229 Sum_probs=65.1
Q ss_pred eEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEe
Q 024168 183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVIL 261 (271)
Q Consensus 183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~ 261 (271)
..|.|||.|+++. |+|++||.|++||+|++||+||+.++|+||++|+|.+++++.|+.|..|++|++|+
T Consensus 650 ~~v~ap~~G~V~~----------v~V~~Gd~V~~Gq~L~~iEamKme~~I~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~ 718 (718)
T 3bg3_A 650 GQIGAPMPGKVID----------IKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMTLEGDDLILEIE 718 (718)
T ss_dssp SCEECSSCEEEEE----------ECSCTTCCBCTTCCCEEEESSSCEEEECCCCCBCBCCCCCCSEEEECSSCEEECBC
T ss_pred ceEeCCCCeEEEE----------EEeCCCCeeCCCCEEEEEecccceeEEecCCCeEEEEEecCCCCEeCCCCEEEEeC
Confidence 3599999999974 78999999999999999999999999999999999999999999999999999763
No 28
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=99.07 E-value=1.4e-11 Score=119.06 Aligned_cols=77 Identities=25% Similarity=0.326 Sum_probs=0.0
Q ss_pred EEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEecC
Q 024168 184 ILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPS 263 (271)
Q Consensus 184 ~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~ 263 (271)
.|+-|..|.-... |....|+|++||.|++||+||+||+||+.++|+||++|+|.+|++++|+.|..|++|+.|...
T Consensus 4 ~i~mP~lg~~~~e----g~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~~i~ap~~G~v~~i~v~~G~~V~~G~~l~~i~~~ 79 (428)
T 3dva_I 4 EFKLPDIGEGIHE----GEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITLDAP 79 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eEEcCCCCCCCcc----EEEEEEEcCCCCEECCCCEEEEEEeCCeeEEEecCCCeEEEEEEeCCCCEeCCCCEEEEEecC
Confidence 3666666642222 345789999999999999999999999999999999999999999999999999999999864
Q ss_pred C
Q 024168 264 F 264 (271)
Q Consensus 264 ~ 264 (271)
.
T Consensus 80 ~ 80 (428)
T 3dva_I 80 G 80 (428)
T ss_dssp -
T ss_pred C
Confidence 4
No 29
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Probab=99.01 E-value=3.1e-11 Score=108.08 Aligned_cols=75 Identities=23% Similarity=0.308 Sum_probs=0.0
Q ss_pred EEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCc-ccCCCeEEEEec
Q 024168 184 ILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDP-IGYGDPLIVILP 262 (271)
Q Consensus 184 ~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~-V~~Gq~L~~I~~ 262 (271)
.|+.|..|.-... +....|+|++||.|++||+||.||+||+.++|.|+++|+|.+|+++.|+. |..|++|+.|..
T Consensus 5 ei~mP~lGesm~e----G~I~~w~vk~Gd~V~~Gd~L~~iEtdK~~~ei~Ap~~G~v~~i~v~~G~~~V~~G~~l~~i~~ 80 (229)
T 1zy8_K 5 KILMPSLSPTMEE----GNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIVE 80 (229)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eEecCCCCCCCCc----EEEEEEecCCCCEeCCCCEEEEEecCCceeEEecCCCeEEEEEEecCCCeeecCCCEEEEEec
Confidence 4666776653332 24578999999999999999999999999999999999999999999997 999999999974
No 30
>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*
Probab=98.97 E-value=7.5e-10 Score=91.08 Aligned_cols=57 Identities=18% Similarity=0.223 Sum_probs=53.7
Q ss_pred CCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEe---cCCCCccc---CCC-eEEEEecCCC
Q 024168 209 KEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKIL---RKDGDPIG---YGD-PLIVILPSFP 265 (271)
Q Consensus 209 ~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Il---v~~Gd~V~---~Gq-~L~~I~~~~~ 265 (271)
++|+.|++||++|.||+||+.++|.||++|+|++|. .++.+.|+ ||+ +||+|++.++
T Consensus 46 ~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evN~~l~~~P~lvn~dpy~~gWl~~i~~~~~ 109 (128)
T 3a7l_A 46 EVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASDE 109 (128)
T ss_dssp CTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGTCTTHHHHCTTTTTCCEEEEESCG
T ss_pred CCCCEEeCCCEEEEEEecceeeEEecCCCeEEEEEhhhhccChHHhccCCCCCccEEEEEECCH
Confidence 889999999999999999999999999999999995 68889999 998 9999998765
No 31
>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1
Probab=98.97 E-value=5.1e-10 Score=92.08 Aligned_cols=57 Identities=19% Similarity=0.365 Sum_probs=53.2
Q ss_pred CCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEe---cCCCCcc---cCCC-eEEEEecCCC
Q 024168 209 KEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKIL---RKDGDPI---GYGD-PLIVILPSFP 265 (271)
Q Consensus 209 ~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Il---v~~Gd~V---~~Gq-~L~~I~~~~~ 265 (271)
++|+.|++||++|.||+||+.++|.||++|+|++|. .++.+.| .||+ +||+|++.++
T Consensus 45 ~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl~~i~~~~~ 108 (128)
T 1onl_A 45 EVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNLALEKTPELVNQDPYGEGWIFRLKPRDM 108 (128)
T ss_dssp CTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEECTHHHHCTTHHHHCTTTTTCCEEEEESCG
T ss_pred CCCCEEeCCCEEEEEEEcceeeEEecCCCeEEEEEhhhhccChhhhccCCCCCccEEEEEECCH
Confidence 899999999999999999999999999999999995 5688888 7998 9999998765
No 32
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=98.94 E-value=1.3e-09 Score=86.11 Aligned_cols=72 Identities=24% Similarity=0.261 Sum_probs=64.0
Q ss_pred eEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeee-----------------------------eee
Q 024168 183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEI-----------------------------PIE 233 (271)
Q Consensus 183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~-----------------------------~V~ 233 (271)
..|.||+.|.+.. ++|++||.|++||+|+.|+...... .|+
T Consensus 2 ~~v~a~~~G~V~~----------v~v~~G~~V~~Gq~L~~ld~~~a~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~i~ 71 (116)
T 2k32_A 2 VIIKPQVSGVIVN----------KLFKAGDKVKKGQTLFIIEQDQASKDFNRSKALFSQSAISQKEYDSSLATLDHTEIK 71 (116)
T ss_dssp EEECCSSCEEEEE----------ECSCTTSEECTTCEEEEEECTTTSHHHHHHHHHTGGGCCSTTTTTHHHHTTTEEEEE
T ss_pred eEEeCcCCEEEEE----------EECCCcCEECCCCEEEEECHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHhhcCCEEE
Confidence 4689999999853 6799999999999999999875543 899
Q ss_pred cCCCeEEEEEecCCCCcccCC-CeEEEEecCC
Q 024168 234 SDIAGEVIKILRKDGDPIGYG-DPLIVILPSF 264 (271)
Q Consensus 234 Ap~~G~V~~Ilv~~Gd~V~~G-q~L~~I~~~~ 264 (271)
||++|+|.++.++.|+.|..| ++|+.|.+.+
T Consensus 72 AP~~G~V~~~~~~~G~~v~~g~~~l~~i~~~~ 103 (116)
T 2k32_A 72 APFDGTIGDALVNIGDYVSASTTELVRVTNLN 103 (116)
T ss_dssp CSSSEEECCCSCCTTCEECTTTSCCEEEECSC
T ss_pred cCCCEEEEEEECCCCCEEcCCCcEEEEEECCC
Confidence 999999999999999999999 9999998754
No 33
>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*
Probab=98.92 E-value=1e-09 Score=90.65 Aligned_cols=57 Identities=28% Similarity=0.405 Sum_probs=53.0
Q ss_pred CCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEe---cCCCCccc---CCC-eEEEEecCCC
Q 024168 209 KEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKIL---RKDGDPIG---YGD-PLIVILPSFP 265 (271)
Q Consensus 209 ~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Il---v~~Gd~V~---~Gq-~L~~I~~~~~ 265 (271)
++|+.|++||+||.||+||+.++|.||++|+|++|. .++.+.|+ ||+ +||+|++.++
T Consensus 45 ~~G~~V~~g~~l~~vEs~K~~~~I~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl~~i~~~~~ 108 (131)
T 1hpc_A 45 EPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGLTGKPGLINSSPYEDGWMIKIKPTSP 108 (131)
T ss_dssp CTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEECTHHHHCTTHHHHCTTTTTCCEEEEESSG
T ss_pred CCCCEEeCCCEEEEEEecceeEEEecCCCeEEEEEhhhhhcChhhhccCCCCCceEEEEEECCH
Confidence 899999999999999999999999999999999995 67788886 898 9999998765
No 34
>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} SCOP: b.84.1.0 PDB: 2edg_A
Probab=98.58 E-value=7e-08 Score=79.19 Aligned_cols=57 Identities=23% Similarity=0.300 Sum_probs=52.3
Q ss_pred CCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEE---ecCCCCccc---CCC-eEEEEecCCC
Q 024168 209 KEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKI---LRKDGDPIG---YGD-PLIVILPSFP 265 (271)
Q Consensus 209 ~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~I---lv~~Gd~V~---~Gq-~L~~I~~~~~ 265 (271)
++|+.|++|+++|.||++|+..+|.||++|+|+++ +..+-+.|. ||+ +||+|++.++
T Consensus 41 ~vG~~v~~G~~~~~VES~K~~sdi~aPvsG~VvevN~~l~~~P~liN~dpy~~gWl~ki~~~~~ 104 (125)
T 3klr_A 41 EVGTKLNKQEEFGALESVKAASELYSPLSGEVTEINKALAENPGLVNKSCYEDGWLIKMTFSNP 104 (125)
T ss_dssp CTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGTTCTTHHHHCTTTTTCCEEEEESCG
T ss_pred CCCCEEcCCCEEEEEEEcceeeeeecCCCEEEEEEhhhhhhChHhhcCCCCCCceEEEEEECCH
Confidence 78999999999999999999999999999999999 567777777 887 8999998765
No 35
>3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae}
Probab=98.45 E-value=2.4e-07 Score=77.66 Aligned_cols=57 Identities=12% Similarity=0.179 Sum_probs=50.3
Q ss_pred CCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEe---cCCCCccc---CCC-eEEEEecCCC
Q 024168 209 KEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKIL---RKDGDPIG---YGD-PLIVILPSFP 265 (271)
Q Consensus 209 ~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Il---v~~Gd~V~---~Gq-~L~~I~~~~~ 265 (271)
++|+.|++||.+|.||++|...+|.||++|+|+++. .++-+.|. ||+ +||+|+++++
T Consensus 63 ~vG~~v~~Gd~~~~VES~Ka~sdi~sPvsG~VvevN~~L~d~PeliN~dPy~~GWl~ki~~~d~ 126 (143)
T 3mxu_A 63 QNGTKLSKGDAAAVVESVKAASDVYAPLDGEVVEINAALAESPELVNQKAETEGWLWKMTVQDE 126 (143)
T ss_dssp CTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGTCTTHHHHSTTTTTCCEEEECSCT
T ss_pred CCCCEeeCCCEEEEEEecceeeeeecCcceEEEEEhhhhhhChHhhhCCCCCCCeEEEEEECCH
Confidence 789999999999999999999999999999999994 45555554 886 9999998776
No 36
>3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Mycobacterium marinum}
Probab=98.43 E-value=9.5e-08 Score=79.58 Aligned_cols=55 Identities=20% Similarity=0.304 Sum_probs=50.1
Q ss_pred CCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEE---ecCCCCcc---cCCC-eEEEEecC
Q 024168 209 KEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKI---LRKDGDPI---GYGD-PLIVILPS 263 (271)
Q Consensus 209 ~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~I---lv~~Gd~V---~~Gq-~L~~I~~~ 263 (271)
++|+.|++||.+|.||++|...+|.||++|+|+++ +..+-+.| -||+ +||+|++.
T Consensus 58 ~vG~~v~~G~~~~~VES~K~~sdi~sPvsG~VvevN~~l~~~P~liN~dPy~~GWl~ki~~~ 119 (137)
T 3tzu_A 58 EVGETVSAGESCGEVESTKTVSDLIAPASGQIVEVNTAAVDDPATIATDPYGAGWLYSVQPT 119 (137)
T ss_dssp CTTCEECTTSEEEEEEESSEEEEEECSEEEEEEEECHHHHHCTHHHHHCTTTTTCCEEEEEE
T ss_pred CCCCEEeCCCEEEEEEecceeeeeecCcceEEEEehhhhhcChhhhcCCCCcCCcEEEEEeh
Confidence 88999999999999999999999999999999999 56677777 4886 99999986
No 37
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=98.16 E-value=4.5e-06 Score=76.62 Aligned_cols=75 Identities=20% Similarity=0.221 Sum_probs=64.3
Q ss_pred CCceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCe-------------------------------
Q 024168 180 EGLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGG------------------------------- 228 (271)
Q Consensus 180 ~~~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~------------------------------- 228 (271)
.....|.++..|.+.. .+|++||.|++||+|+.|+.-.+
T Consensus 55 ~~~~~v~~~~~G~V~~----------v~v~~G~~V~kGq~L~~ld~~~l~~a~~~l~~a~a~l~~a~~~~~r~~~L~~~~ 124 (359)
T 3lnn_A 55 AKLVKVLPPLAGRIVS----------LNKQLGDEVKAGDVLFTIDSADLAQANSDAAKARAAMTMARRNLDRQRELDKSE 124 (359)
T ss_dssp SSEEEECCSSCEEEEE----------CCSCTTCEECTTCEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSS
T ss_pred CcEEEEeccCCEEEEE----------EEcCCCCEEcCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3457899999998853 67999999999999999997543
Q ss_pred ---------------------------------------------eeeeecCCCeEEEEEecCCCCcccC-CCeEEEEec
Q 024168 229 ---------------------------------------------EIPIESDIAGEVIKILRKDGDPIGY-GDPLIVILP 262 (271)
Q Consensus 229 ---------------------------------------------~~~V~Ap~~G~V~~Ilv~~Gd~V~~-Gq~L~~I~~ 262 (271)
...|+||++|+|.++.++.|+.|.. |++|+.|..
T Consensus 125 ~~s~~~~~~a~~~~~~a~a~l~~a~~~l~~~~~~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~~g~~l~~i~~ 204 (359)
T 3lnn_A 125 IAAKRDFEQAQSDYDQAASESQRADARLAQLGAKGGGTLQAGGGHILAVRSPINGRVVDLNAATGAYWNDTTASLMTVAD 204 (359)
T ss_dssp CCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGBCSSTTSEEEEECSSCEEEEECCCCBTCEECCSSCCSEEEEC
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhhcccceEEEECCCCEEEEEeecCCCceeCCCCcceEEEec
Confidence 2479999999999999999999999 999999875
Q ss_pred CC
Q 024168 263 SF 264 (271)
Q Consensus 263 ~~ 264 (271)
..
T Consensus 205 ~~ 206 (359)
T 3lnn_A 205 LS 206 (359)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 38
>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A
Probab=98.11 E-value=3.3e-06 Score=71.63 Aligned_cols=56 Identities=18% Similarity=0.187 Sum_probs=49.9
Q ss_pred CCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEe---cCCCCccc---CCC-eEEEEecCC
Q 024168 209 KEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKIL---RKDGDPIG---YGD-PLIVILPSF 264 (271)
Q Consensus 209 ~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Il---v~~Gd~V~---~Gq-~L~~I~~~~ 264 (271)
++|+.|++|+.+|.||++|...+|.||++|+|+++. ..+-+.|. ||+ +||+|++.+
T Consensus 68 ~vG~~v~~Gd~~~~VESvKa~sdi~sPvsG~VvevN~~L~d~PeliN~dPyg~GWl~kik~~d 130 (155)
T 3hgb_A 68 VIGTAVTAGETFGEVESTKSVSDLYAPISGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQVDS 130 (155)
T ss_dssp CTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECTHHHHCTTHHHHCTTTTTCCEEEECCT
T ss_pred CCCCEEeCCCEEEEEEecceeeeeecCcceEEEEEhhhhhhChHhhccCCCCCcEEEEEEECC
Confidence 789999999999999999999999999999999994 45555654 876 999999987
No 39
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=98.05 E-value=2.1e-06 Score=76.23 Aligned_cols=73 Identities=18% Similarity=0.194 Sum_probs=62.1
Q ss_pred ceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCe---------------------------------
Q 024168 182 LVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGG--------------------------------- 228 (271)
Q Consensus 182 ~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~--------------------------------- 228 (271)
...|.+|..|.+.. ++|++||.|++||+|+.|+....
T Consensus 22 ~~~v~a~~~G~V~~----------v~v~~G~~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~a~l~~a~~~~~r~~~L~~ 91 (277)
T 2f1m_A 22 IAEVRPQVSGIILK----------RNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLG 91 (277)
T ss_dssp EEEECCSSCEEEEE----------ECSCTTCEECTTSCSEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred EEEEEccccEEEEE----------EEcCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999853 67999999999999999986321
Q ss_pred --------------------------------------eeeeecCCCeEEEEEecCCCCcccCC--CeEEEEecCC
Q 024168 229 --------------------------------------EIPIESDIAGEVIKILRKDGDPIGYG--DPLIVILPSF 264 (271)
Q Consensus 229 --------------------------------------~~~V~Ap~~G~V~~Ilv~~Gd~V~~G--q~L~~I~~~~ 264 (271)
...|+||++|+|..+.++.|+.|..| ++|+.|....
T Consensus 92 ~g~~s~~~~~~a~~~~~~a~a~l~~a~a~l~~a~~~l~~~~I~AP~~G~V~~~~~~~G~~v~~g~~~~l~~i~~~~ 167 (277)
T 2f1m_A 92 TQYISKQEYDQALADAQQANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATVQQLD 167 (277)
T ss_dssp STTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEECCSSCEEECCCSSCBTCEECTTCSSCSEEEEECS
T ss_pred cCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEeEEcCCCCEEcCCCCceeEEEecCC
Confidence 23799999999999999999999999 5899987543
No 40
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=98.04 E-value=8.6e-06 Score=77.33 Aligned_cols=71 Identities=14% Similarity=0.191 Sum_probs=61.1
Q ss_pred ceEEeCCcCeEEEecccccCCCCCCcc-CCCCeEecCCeEEEEEec----------------------------------
Q 024168 182 LVILESPKVGYFRRSRTIKGKRAPPSC-KEKQTVREGQVLCYIEQL---------------------------------- 226 (271)
Q Consensus 182 ~~~V~sP~vG~f~~~~s~~~P~~~~~V-~~Gd~V~~Gq~l~~IEam---------------------------------- 226 (271)
...|.++..|.+.. .+| ++||.|++||+|+.|+.-
T Consensus 121 ~~~v~a~~~G~V~~----------v~V~~~Gd~VkkGq~L~~ld~~~l~~aq~~~~~a~~~~~~~~~~~~a~~~l~~~~~ 190 (413)
T 3ne5_B 121 YAIVQARAAGFIDK----------VYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGM 190 (413)
T ss_dssp EEEECCSSCEEEEE----------ECSCCTTCEECTTCEEEEEECCSSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC
T ss_pred eEEEecccCEEEEE----------EEeCCCCCEEcCCCEEEEEcCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCC
Confidence 46789999998853 568 999999999999999942
Q ss_pred --------------CeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168 227 --------------GGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILP 262 (271)
Q Consensus 227 --------------K~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~ 262 (271)
.....|+||++|+|.++.++.|+.|..|++||.|..
T Consensus 191 ~~~~~~~l~~~~~~~~~~~I~AP~~G~V~~~~v~~G~~V~~G~~l~~I~~ 240 (413)
T 3ne5_B 191 PEADIRRLIATQKIQTRFTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQG 240 (413)
T ss_dssp CHHHHHHHHHHTSCCCEEEEECSSSEEEEECCCCTTCEECTTSCSEEEEE
T ss_pred CHHHHHHHHHhccccccEEEEcCCCeEEEEEEcCCCCEECCCCcEEEEeC
Confidence 123479999999999999999999999999999874
No 41
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=97.97 E-value=8.7e-06 Score=74.20 Aligned_cols=73 Identities=19% Similarity=0.217 Sum_probs=61.6
Q ss_pred CceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCe--------------------------------
Q 024168 181 GLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGG-------------------------------- 228 (271)
Q Consensus 181 ~~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~-------------------------------- 228 (271)
....|.++..|.+.. .+|++||.|++||+|+.|+....
T Consensus 30 ~~~~v~~~~~G~V~~----------v~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~ 99 (341)
T 3fpp_A 30 RKVDVGAQVSGQLKT----------LSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTY 99 (341)
T ss_dssp SEEECCCSSCEEEEE----------ECCCTTCEECTTCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred EEEEEeccCCcEEEE----------EEeCCCCEECCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446899999998853 67999999999999999986421
Q ss_pred -----------------------------------------------------eeeeecCCCeEEEEEecCCCCcccCCC
Q 024168 229 -----------------------------------------------------EIPIESDIAGEVIKILRKDGDPIGYGD 255 (271)
Q Consensus 229 -----------------------------------------------------~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq 255 (271)
...|+||++|+|.++.++.|+.|..|+
T Consensus 100 ~r~~~L~~~~~~s~~~~~~a~~~~~~~~a~l~~~~a~l~~a~a~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~~v~~g~ 179 (341)
T 3fpp_A 100 SRQQRLAQTQAVSQQDLDNAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQ 179 (341)
T ss_dssp HHHHHHHHTSSSTTHHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHTTTTTTTTSSEEECSSSEEEEEESSCTTCEECCTT
T ss_pred HHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEEEEecCCCCEEecCC
Confidence 135999999999999999999999999
Q ss_pred e---EEEEecC
Q 024168 256 P---LIVILPS 263 (271)
Q Consensus 256 ~---L~~I~~~ 263 (271)
+ |+.|...
T Consensus 180 ~~~~l~~i~~~ 190 (341)
T 3fpp_A 180 QAPNILTLADM 190 (341)
T ss_dssp SCCCCEEEECC
T ss_pred CCceEEEEecC
Confidence 7 8888653
No 42
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=97.83 E-value=1.2e-05 Score=74.98 Aligned_cols=73 Identities=18% Similarity=0.217 Sum_probs=62.2
Q ss_pred CceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCe--------------------------------
Q 024168 181 GLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGG-------------------------------- 228 (271)
Q Consensus 181 ~~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~-------------------------------- 228 (271)
....|.++..|.+.. .+|++||.|++||+|+.|+....
T Consensus 42 ~~~~v~a~v~G~V~~----------v~v~~Gd~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~~~~~R~~~L~~~g~is~ 111 (369)
T 1vf7_A 42 RIAEVRPQVNGIILK----------RLFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYKLLVADQAVSK 111 (369)
T ss_dssp CEEEECCSSCEEEEE----------CCSCSSEEECTTSEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCH
T ss_pred eEEEEEeeCceEEEE----------EEcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCH
Confidence 446899999999853 67999999999999999985321
Q ss_pred -------------------------eeeeecCCCeEEEEEecCCCCcccCC--CeEEEEecC
Q 024168 229 -------------------------EIPIESDIAGEVIKILRKDGDPIGYG--DPLIVILPS 263 (271)
Q Consensus 229 -------------------------~~~V~Ap~~G~V~~Ilv~~Gd~V~~G--q~L~~I~~~ 263 (271)
...|+||++|+|.++.++.|+.|..| ++|+.|...
T Consensus 112 ~~~~~a~~~~~~a~a~l~~a~~~l~~~~I~AP~~G~V~~~~v~~G~~V~~g~g~~l~~i~~~ 173 (369)
T 1vf7_A 112 QQYADANAAYLQSKAAVEQARINLRYTKVLSPISGRIGRSAVTEGALVTNGQANAMATVQQL 173 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTEEECSSSEEECCCSSCBTCEECTTCSSCSEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCEEECCCCeEEEEEEcCCCCeEcCCCCceeEEEecC
Confidence 24799999999999999999999995 899999754
No 43
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}
Probab=97.82 E-value=6.2e-05 Score=69.99 Aligned_cols=69 Identities=20% Similarity=0.115 Sum_probs=58.7
Q ss_pred ceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEec----CeeeeeecCCCeEEEEEecCCCCcccCCCeE
Q 024168 182 LVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQL----GGEIPIESDIAGEVIKILRKDGDPIGYGDPL 257 (271)
Q Consensus 182 ~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEam----K~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L 257 (271)
...|+||..|.|+ +.++.||.|++||+|+.|... ....+|+||.+|+|.... ..-.|..|+.|
T Consensus 257 ~~~v~A~~~Gl~~-----------~~v~~Gd~V~~G~~la~I~dp~~~g~~~~~v~Ap~dGiVi~~~--~~~~V~~G~~l 323 (331)
T 3na6_A 257 DCYLFSEHDGLFE-----------IMIDLGEPVQEGDLVARVWSPDRTGEAPVEYRARRSGVLISRH--FPGMIKSGDCA 323 (331)
T ss_dssp CCCEECSSCEEEE-----------ESSCTTCEECTTCEEEEEECSSCSSCCCEEEECSSSEEEEEEE--CSSEECTTCEE
T ss_pred cEEEeCCCCeEEE-----------EcCCCCCEEcCCCEEEEEEcCccCCCeeEEEEcCCCEEEEEEe--CCCccCCCCEE
Confidence 4568999999886 358999999999999999985 456899999999998875 45688999999
Q ss_pred EEEecC
Q 024168 258 IVILPS 263 (271)
Q Consensus 258 ~~I~~~ 263 (271)
|.|...
T Consensus 324 ~~Ia~~ 329 (331)
T 3na6_A 324 AVIGVV 329 (331)
T ss_dssp EEEECB
T ss_pred EEEecc
Confidence 999754
No 44
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}
Probab=97.62 E-value=0.00018 Score=67.18 Aligned_cols=71 Identities=18% Similarity=0.302 Sum_probs=59.9
Q ss_pred CceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEec----CeeeeeecCCCeEEEEEecCCCCcccCCCe
Q 024168 181 GLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQL----GGEIPIESDIAGEVIKILRKDGDPIGYGDP 256 (271)
Q Consensus 181 ~~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEam----K~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~ 256 (271)
....++||..|.|+ +.++.||.|++||+|+.|+.+ +...+|+||.+|+|..+. ....|..|+.
T Consensus 266 ~~~~v~A~~~G~~~-----------~~~~~g~~V~~G~~La~i~d~~~~g~~~~~v~Ap~dG~v~~~~--~~~~V~~Gd~ 332 (354)
T 3cdx_A 266 ADAYVMAPRTGLFE-----------PTHYVGEEVRTGETAGWIHFVEDVDTAPLELLYRRDGIVWFGA--GPGRVTRGDA 332 (354)
T ss_dssp GGGEEECSSCEEEE-----------ESCCTTCEECTTSEEEEEECTTSSSCCCEEEECCSCEEEEEEE--CSSEECTTCE
T ss_pred CcEEEECCCCEEEE-----------EeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEcCCCeEEEEEe--CCCccCCCCE
Confidence 34679999999775 347899999999999999984 677899999999999775 6778999999
Q ss_pred EEEEecCC
Q 024168 257 LIVILPSF 264 (271)
Q Consensus 257 L~~I~~~~ 264 (271)
||.|....
T Consensus 333 l~~ia~~~ 340 (354)
T 3cdx_A 333 VAVVMEDY 340 (354)
T ss_dssp EEEEEEEC
T ss_pred EEEEeeec
Confidence 99987543
No 45
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*
Probab=97.61 E-value=0.00015 Score=68.52 Aligned_cols=69 Identities=13% Similarity=0.100 Sum_probs=59.0
Q ss_pred CceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEe------cCeeeeeecCCCeEEEEEecCCCCcccCC
Q 024168 181 GLVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQ------LGGEIPIESDIAGEVIKILRKDGDPIGYG 254 (271)
Q Consensus 181 ~~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEa------mK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~G 254 (271)
+...|+||..|.|+ +.++.||.|++||+|+.|-. .....+|+||.+|+|.... ..-.|..|
T Consensus 289 ~~~~v~A~~~Gl~~-----------~~v~lGd~V~kG~~la~I~d~~~~g~g~~~~~v~Ap~dGiVi~~~--~~p~V~~G 355 (368)
T 3fmc_A 289 NYRKFHAPKAGMVE-----------YLGKVGVPMKATDPLVNLLRLDLYGTGEELTVLRLPEDGVPILHF--ASASVHQG 355 (368)
T ss_dssp GEEEEECSSCEEEE-----------ECSCTTCCBCTTCEEEEEECGGGTTSSCSEEEEECSSSEEEEEEC--SSSEECTT
T ss_pred CcEEEecCCCEEEE-----------EeCCCCCEeCCCCEEEEEEcCCCCCCCCeeEEEEcCCCEEEEEEe--CCCccCCC
Confidence 45789999999997 35899999999999999998 4466899999999998876 44689999
Q ss_pred CeEEEEec
Q 024168 255 DPLIVILP 262 (271)
Q Consensus 255 q~L~~I~~ 262 (271)
+.|+.|-.
T Consensus 356 ~~l~~i~~ 363 (368)
T 3fmc_A 356 TELYKVMT 363 (368)
T ss_dssp CEEEEEEE
T ss_pred CEEEEEee
Confidence 99998864
No 46
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.51 E-value=4e-05 Score=59.23 Aligned_cols=46 Identities=17% Similarity=0.244 Sum_probs=42.8
Q ss_pred CCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168 217 GQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILP 262 (271)
Q Consensus 217 Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~ 262 (271)
|..+|.++.++....|.||++|+|.++++++||.|..||+|+.++.
T Consensus 5 ~g~~~~~~~~~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~le~ 50 (100)
T 2dn8_A 5 SSGTCVFEKENDPTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEV 50 (100)
T ss_dssp CCCCCCCCCCCCTTEEECSSCEEEEEESSCTTEEECTTCEEEEEEE
T ss_pred CCEEEEEEcCCCCcEEeCCCCEEEEEEEcCCcCEECCCCEEEEEEe
Confidence 5667999999999999999999999999999999999999999974
No 47
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=97.35 E-value=1.3e-05 Score=73.72 Aligned_cols=31 Identities=26% Similarity=0.410 Sum_probs=28.0
Q ss_pred eeecCCCeEEEEEecCCCCcccCCCe---EEEEe
Q 024168 231 PIESDIAGEVIKILRKDGDPIGYGDP---LIVIL 261 (271)
Q Consensus 231 ~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~---L~~I~ 261 (271)
.|+||++|+|.++.++.|+.|..|++ |+.|.
T Consensus 156 ~i~AP~~G~V~~~~~~~G~~v~~g~~~~~l~~i~ 189 (369)
T 4dk0_A 156 KITSPIDGTVISTPVSEGQTVNSNQTTPTIIKVA 189 (369)
T ss_dssp SCCCSCCSCCCBCCCCTTCBCCTTTSCCCCBBCC
T ss_pred EEECCCCeEEEEeeCCCCCCccCCCCcceEEEEc
Confidence 49999999999999999999999998 76554
No 48
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=97.26 E-value=0.00052 Score=58.32 Aligned_cols=65 Identities=17% Similarity=0.217 Sum_probs=53.8
Q ss_pred eEEeCCcCeEEEecccccCCCCCCccCCCCeEec----CCeEEEEEecCeeeeeecCCCeEEEEE---------------
Q 024168 183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVRE----GQVLCYIEQLGGEIPIESDIAGEVIKI--------------- 243 (271)
Q Consensus 183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~----Gq~l~~IEamK~~~~V~Ap~~G~V~~I--------------- 243 (271)
..|.||+.|.+..- -++.|.+-. |+.+++.... ..|+||++|+|..+
T Consensus 13 ~~i~aP~~G~vv~l-----------~~v~D~vfs~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~hAigi~t~~G~ 78 (161)
T 1f3z_A 13 IEIIAPLSGEIVNI-----------EDVPDVVFAEKIVGDGIAIKPTG---NKMVAPVDGTIGKIFETNHAFSIESDSGV 78 (161)
T ss_dssp EEEECSSCEEEEEG-----------GGSSSHHHHTTSSCEEEEEEECS---SEEECSSSEEEEEECTTSSEEEEEETTSC
T ss_pred cEEEecCCeEEEEe-----------EECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEeCCCC
Confidence 46999999998743 245666655 8888887764 58899999999998
Q ss_pred --------------------ecCCCCcccCCCeEEEEe
Q 024168 244 --------------------LRKDGDPIGYGDPLIVIL 261 (271)
Q Consensus 244 --------------------lv~~Gd~V~~Gq~L~~I~ 261 (271)
+++.||.|..||+|+++.
T Consensus 79 evLiHiGidTV~l~G~gF~~~V~~Gd~V~~G~~L~~~d 116 (161)
T 1f3z_A 79 ELFVHFGIDTVELKGEGFKRIAEEGQRVKVGDTVIEFD 116 (161)
T ss_dssp EEEEECSBSGGGGTTTTEEECSCTTCEECTTCEEEEEC
T ss_pred EEEEEECccchhcCCCccEEEEeCcCEECCCCEEEEEC
Confidence 899999999999999885
No 49
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=97.22 E-value=0.00055 Score=57.73 Aligned_cols=65 Identities=12% Similarity=0.194 Sum_probs=53.8
Q ss_pred eEEeCCcCeEEEecccccCCCCCCccCCCCeEec----CCeEEEEEecCeeeeeecCCCeEEEE----------------
Q 024168 183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVRE----GQVLCYIEQLGGEIPIESDIAGEVIK---------------- 242 (271)
Q Consensus 183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~----Gq~l~~IEamK~~~~V~Ap~~G~V~~---------------- 242 (271)
..|.||+.|.+..- -++.|.+-. |+.+++.... ..|+||++|+|..
T Consensus 8 ~~i~aP~~G~vv~l-----------~~v~D~vf~~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~HAigi~~~~G~ 73 (154)
T 2gpr_A 8 LKVLAPCDGTIITL-----------DEVEDEVFKERMLGDGFAINPKS---NDFHAPVSGKLVTAFPTKHAFGIQTKSGV 73 (154)
T ss_dssp EEEECSSSEEEECG-----------GGSSCHHHHTTSSCEEEEEEESS---SEEECSSCEEEEECCTTCSEEEEECTTSC
T ss_pred CEEEecCCeEEEEe-----------eECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEcCCCC
Confidence 46999999999742 356676655 8888888764 5899999999998
Q ss_pred -------------------EecCCCCcccCCCeEEEEe
Q 024168 243 -------------------ILRKDGDPIGYGDPLIVIL 261 (271)
Q Consensus 243 -------------------Ilv~~Gd~V~~Gq~L~~I~ 261 (271)
++|+.||.|..||+|+++.
T Consensus 74 evLiHiGidTv~l~G~gF~~~V~~Gd~V~~G~~L~~~d 111 (154)
T 2gpr_A 74 EILLHIGLDTVSLDGNGFESFVTQDQEVNAGDKLVTVD 111 (154)
T ss_dssp EEEEECSSSGGGGTTCSEEECCCTTCEECTTCEEEEEC
T ss_pred EEEEEECcchhhcCCCceEEEEcCCCEEcCCCEEEEEC
Confidence 4899999999999999885
No 50
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=96.94 E-value=0.00047 Score=58.61 Aligned_cols=64 Identities=19% Similarity=0.333 Sum_probs=52.7
Q ss_pred EEeCCcCeEEEecccccCCCCCCccCCCCeEec----CCeEEEEEecCeeeeeecCCCeEEEEE----------------
Q 024168 184 ILESPKVGYFRRSRTIKGKRAPPSCKEKQTVRE----GQVLCYIEQLGGEIPIESDIAGEVIKI---------------- 243 (271)
Q Consensus 184 ~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~----Gq~l~~IEamK~~~~V~Ap~~G~V~~I---------------- 243 (271)
.|.||+.|.+..- -++.|.+-. |+.+++.-. ...|+||++|+|..+
T Consensus 14 ~i~aP~~G~vv~l-----------~~v~D~vfs~~~~G~Giai~p~---~~~v~AP~~G~V~~v~~t~hAigi~t~~G~e 79 (162)
T 1ax3_A 14 VFVSPITGEIHPI-----------TDVPDQVFSGKMMGDGFAILPS---EGIVVSPVRGKILNVFPTKHAIGLQSDGGRE 79 (162)
T ss_dssp SCCCCCSEEEEEG-----------GGSSSHHHHTCTTSEEEEEEEC---SSEEEESCCEEEEECCSSSSEEEEESSSSCE
T ss_pred EEEecCceEEEEe-----------EECCCccccccceeceEEEEeC---CCcEECCCCeEEEEEccCCeEEEEEcCCCCE
Confidence 3899999998742 355666655 888888776 358899999999988
Q ss_pred -------------------ecCCCCcccCCCeEEEEe
Q 024168 244 -------------------LRKDGDPIGYGDPLIVIL 261 (271)
Q Consensus 244 -------------------lv~~Gd~V~~Gq~L~~I~ 261 (271)
+|+.||.|..||+|+++.
T Consensus 80 vLiHIGidTV~l~G~gF~~~V~~Gd~V~~G~~L~~~d 116 (162)
T 1ax3_A 80 ILIHFGIDTVSLKGEGFTSFVSEGDRVEPGQKLLEVD 116 (162)
T ss_dssp EEEECSSSTTTTTTTTEEESCCCCSEECSEEEEEEEC
T ss_pred EEEEECccchhcCCCccEEEEeCCCEEcCCCEEEEEC
Confidence 889999999999999885
No 51
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=96.93 E-value=0.001 Score=47.40 Aligned_cols=33 Identities=24% Similarity=0.430 Sum_probs=30.5
Q ss_pred eeecCCCeEEEEEecCCCCcccCCCeEEEEecC
Q 024168 231 PIESDIAGEVIKILRKDGDPIGYGDPLIVILPS 263 (271)
Q Consensus 231 ~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~ 263 (271)
.|.|+++|+|.+++++.|+.|..||+|++|...
T Consensus 1 ~v~a~~~G~v~~~~v~~G~~V~~G~~l~~i~~~ 33 (72)
T 1z6h_A 1 TVSIQMAGNLWKVHVKAGDQIEKGQEVAILESM 33 (72)
T ss_dssp CEECCSSEEEEEECCCTTCEECTTCEEEEEEET
T ss_pred CEECcccEEEEEEEcCCcCEECCCCEEEEEECC
Confidence 478999999999999999999999999999853
No 52
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=96.78 E-value=0.0018 Score=46.13 Aligned_cols=33 Identities=24% Similarity=0.519 Sum_probs=31.0
Q ss_pred eeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168 230 IPIESDIAGEVIKILRKDGDPIGYGDPLIVILP 262 (271)
Q Consensus 230 ~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~ 262 (271)
..|.|+++|+|.+++++.|+.|..||+|+++..
T Consensus 6 ~~v~a~~~G~v~~~~v~~G~~V~~G~~l~~i~~ 38 (74)
T 2d5d_A 6 NVVSAPMPGKVLRVLVRVGDRVRVGQGLLVLEA 38 (74)
T ss_dssp CEEECSSCEEEEEECCCTTCEECTTCEEEEEEE
T ss_pred eEEecCCCEEEEEEEcCCCCEeCCCCEEEEEec
Confidence 468999999999999999999999999999985
No 53
>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}
Probab=96.71 E-value=0.0054 Score=56.50 Aligned_cols=68 Identities=21% Similarity=0.332 Sum_probs=56.2
Q ss_pred ceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEe----cCeeeeeecCCCeEEEEEecCCCCcccCCCeE
Q 024168 182 LVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQ----LGGEIPIESDIAGEVIKILRKDGDPIGYGDPL 257 (271)
Q Consensus 182 ~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEa----mK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L 257 (271)
...++||..|.|+ ++++.|+.|++||+|+.+-. +....+|+||.+|.|.-.. ..-.|..|+.|
T Consensus 257 ~~~~~a~~~G~~~-----------~~~~~g~~V~~G~~la~i~dp~~~G~~~~~v~Ap~dGiv~~~~--~~p~V~~Gd~l 323 (332)
T 2qj8_A 257 SDQLKSPSPGIFE-----------PRCSVMDEVEQGDVVGVLHPMGSLSAASIDIRAQSKSTVFAIR--SAMYVQGNEEV 323 (332)
T ss_dssp GGEEECSSSEEEE-----------ECSCTTCEECTTCEEEEEECTTCSSSCCEEEECSSSEEEEEEE--CSEEECTTCEE
T ss_pred ceEEeCCCCeEEE-----------EeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEeCCCeEEEEEe--CCCeeCCCCEE
Confidence 3568999999886 24789999999999999965 5567899999999998775 55678889999
Q ss_pred EEEec
Q 024168 258 IVILP 262 (271)
Q Consensus 258 ~~I~~ 262 (271)
|.|..
T Consensus 324 ~~ia~ 328 (332)
T 2qj8_A 324 AILAR 328 (332)
T ss_dssp EEEEE
T ss_pred EEEee
Confidence 98854
No 54
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=96.64 E-value=0.0021 Score=46.35 Aligned_cols=33 Identities=36% Similarity=0.550 Sum_probs=31.1
Q ss_pred eeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168 230 IPIESDIAGEVIKILRKDGDPIGYGDPLIVILP 262 (271)
Q Consensus 230 ~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~ 262 (271)
..|.|+++|+|.++++++|+.|..||+|+.|..
T Consensus 9 ~~v~a~~~G~v~~~~v~~G~~V~~G~~L~~l~~ 41 (77)
T 1dcz_A 9 GEIPAPLAGTVSKILVKEGDTVKAGQTVLVLEA 41 (77)
T ss_dssp SEEEBSSSCEEEEECCCTTCEECTTSEEEEEEE
T ss_pred eEEECCCCEEEEEEEcCCcCEEcCCCEEEEEEc
Confidence 478999999999999999999999999999975
No 55
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=96.52 E-value=0.0027 Score=49.49 Aligned_cols=34 Identities=26% Similarity=0.514 Sum_probs=31.6
Q ss_pred eeeecCCCeEEEEEecCCCCcccCCCeEEEEecC
Q 024168 230 IPIESDIAGEVIKILRKDGDPIGYGDPLIVILPS 263 (271)
Q Consensus 230 ~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~ 263 (271)
..|.|+++|+|.++.+++|+.|..||+|++|...
T Consensus 2 ~~v~a~~~G~V~~v~v~~G~~V~~Gq~L~~ld~~ 35 (116)
T 2k32_A 2 VIIKPQVSGVIVNKLFKAGDKVKKGQTLFIIEQD 35 (116)
T ss_dssp EEECCSSCEEEEEECSCTTSEECTTCEEEEEECT
T ss_pred eEEeCcCCEEEEEEECCCcCEECCCCEEEEECHH
Confidence 4689999999999999999999999999999864
No 56
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=96.51 E-value=0.0014 Score=48.89 Aligned_cols=33 Identities=18% Similarity=0.241 Sum_probs=31.0
Q ss_pred eeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168 230 IPIESDIAGEVIKILRKDGDPIGYGDPLIVILP 262 (271)
Q Consensus 230 ~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~ 262 (271)
..|.||++|+|.+++++.|+.|..||+|+.|+.
T Consensus 6 ~~v~a~~~G~v~~~~v~~Gd~V~~G~~l~~ie~ 38 (84)
T 2kcc_A 6 TVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEV 38 (84)
T ss_dssp TEECCSSSCCEEEESSCTTEEECTTCEEEEEEC
T ss_pred ceEECCCCEEEEEEECCCCCEECCCCEEEEEEe
Confidence 369999999999999999999999999999984
No 57
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=96.10 E-value=0.0058 Score=53.87 Aligned_cols=53 Identities=19% Similarity=0.189 Sum_probs=39.5
Q ss_pred CCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168 209 KEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILP 262 (271)
Q Consensus 209 ~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~ 262 (271)
+.|+.-..=..-|.|++. -...|.++++|+|.++++++||.|..||+|++|..
T Consensus 3 ~~~~~~~~v~~~G~v~~~-~~~~v~a~~~G~V~~v~v~~G~~V~kGq~L~~ld~ 55 (277)
T 2f1m_A 3 KTEPLQITTELPGRTSAY-RIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDP 55 (277)
T ss_dssp -------CCEEEEEEECS-EEEEECCSSCEEEEEECSCTTCEECTTSCSEEECC
T ss_pred eeeccceEEEEEEEEEee-eEEEEEccccEEEEEEEcCCCCEecCCCEEEEECc
Confidence 334444444556788875 35689999999999999999999999999999975
No 58
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=95.90 E-value=0.006 Score=46.80 Aligned_cols=34 Identities=26% Similarity=0.467 Sum_probs=31.5
Q ss_pred eeeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168 229 EIPIESDIAGEVIKILRKDGDPIGYGDPLIVILP 262 (271)
Q Consensus 229 ~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~ 262 (271)
...|.|+++|+|.+++++.|+.|..||+|++|..
T Consensus 14 ~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~ 47 (99)
T 2ejm_A 14 QGGPLAPMTGTIEKVFVKAGDKVKAGDSLMVMIA 47 (99)
T ss_dssp CSSCBCSSSEEEEEECCCTTEEECSSCEEEEEES
T ss_pred ceEEecCCCEEEEEEECCCCCEECCCCEEEEEEc
Confidence 3578999999999999999999999999999985
No 59
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}
Probab=95.87 E-value=0.0051 Score=46.84 Aligned_cols=33 Identities=27% Similarity=0.428 Sum_probs=31.0
Q ss_pred eeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168 230 IPIESDIAGEVIKILRKDGDPIGYGDPLIVILP 262 (271)
Q Consensus 230 ~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~ 262 (271)
..|.|+++|+|.+++++.||.|..||+|+.|+.
T Consensus 26 ~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~ 58 (94)
T 2jku_A 26 SVLRSPMPGVVVAVSVKPGDAVAEGQEICVIEA 58 (94)
T ss_dssp CCCCCSSSCEEEEECCCTTCCCCTTCCCEEEEC
T ss_pred eEEECCCCEEEEEEECCCCCEEcCCCEEEEEec
Confidence 468999999999999999999999999999985
No 60
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}
Probab=95.81 E-value=0.0096 Score=51.99 Aligned_cols=51 Identities=20% Similarity=0.343 Sum_probs=41.7
Q ss_pred CCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEe-----------------------------cCCCCccc
Q 024168 202 KRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKIL-----------------------------RKDGDPIG 252 (271)
Q Consensus 202 P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Il-----------------------------v~~Gd~V~ 252 (271)
.++..+|+.|+.|++||+||.=. +|.++++|+|.+.. ++||+.|.
T Consensus 19 yGA~L~V~dG~~VkkG~~laeWD------PIitE~~G~V~d~k~lP~I~I~d~~G~~~~~Y~LPvgA~l~~~V~dG~~V~ 92 (193)
T 2xha_A 19 PKAKLHVNNGKDVNKGDLIAEEP------PIYARRSGVIVDVKNVRKIVVETIDRKYTKTYYIPESAGIEPGLRVGTKVK 92 (193)
T ss_dssp TTCEESCCTTCEECTTCEEEEEC------CEECSSCEEEEEEEEEEEEEEECTTSSCEEEEEEEGGGCCCTTCCTTCEEC
T ss_pred CCCEEEECCCCEEcCCCEEEEeC------cEEEccCEEEEeeccCcEEEEEcCCCCEeEEEEcCCCCEEEEEcCCCCEEc
Confidence 45677899999999999999765 99999999997543 67777777
Q ss_pred CCCeEE
Q 024168 253 YGDPLI 258 (271)
Q Consensus 253 ~Gq~L~ 258 (271)
.|++|+
T Consensus 93 ~GdvLA 98 (193)
T 2xha_A 93 QGLPLS 98 (193)
T ss_dssp TTSBSS
T ss_pred CCCEEe
Confidence 777765
No 61
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=95.69 E-value=0.007 Score=44.11 Aligned_cols=33 Identities=18% Similarity=0.365 Sum_probs=30.7
Q ss_pred eeeecCCCeEEEEE-------ecCCCCcccCCCeEEEEec
Q 024168 230 IPIESDIAGEVIKI-------LRKDGDPIGYGDPLIVILP 262 (271)
Q Consensus 230 ~~V~Ap~~G~V~~I-------lv~~Gd~V~~Gq~L~~I~~ 262 (271)
..|.||++|+|.++ +++.|+.|..||+|+.|+.
T Consensus 5 ~~v~a~~~G~v~~~~~~~~~~~v~~G~~V~~G~~l~~ie~ 44 (80)
T 1bdo_A 5 HIVRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEA 44 (80)
T ss_dssp EEEECSSSEEEESSSSTTSCCSCCTTCEECTTCEEEEEEE
T ss_pred eEEEcCCCeEEEEecccCcccccCCcCEECCCCEEEEEEe
Confidence 36899999999998 9999999999999999985
No 62
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=95.59 E-value=0.0091 Score=54.47 Aligned_cols=48 Identities=21% Similarity=0.296 Sum_probs=41.1
Q ss_pred cCCeEEEEEec-CeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEecC
Q 024168 216 EGQVLCYIEQL-GGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPS 263 (271)
Q Consensus 216 ~Gq~l~~IEam-K~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~ 263 (271)
.-..-|.|++. .-...|.++++|+|.++++++|+.|..||+|++|...
T Consensus 43 ~~~~~G~v~~~p~~~~~v~~~~~G~V~~v~v~~G~~V~kGq~L~~ld~~ 91 (359)
T 3lnn_A 43 PFNLPAMIEADPAKLVKVLPPLAGRIVSLNKQLGDEVKAGDVLFTIDSA 91 (359)
T ss_dssp EEEEEEEEECCSSSEEEECCSSCEEEEECCSCTTCEECTTCEEEEEECS
T ss_pred eEEEEEEEEECCCcEEEEeccCCEEEEEEEcCCCCEEcCCCEEEEEChH
Confidence 33456788875 4567899999999999999999999999999999864
No 63
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=95.52 E-value=0.015 Score=52.63 Aligned_cols=55 Identities=15% Similarity=0.206 Sum_probs=43.4
Q ss_pred cCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEecC
Q 024168 208 CKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPS 263 (271)
Q Consensus 208 V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~ 263 (271)
|+.|+.-..=..-|.|++.. ...|.++++|+|.++++++|+.|..||+|++|.+.
T Consensus 11 v~~~~~~~~v~~~G~v~~~~-~~~v~~~~~G~V~~v~v~~G~~V~kG~~L~~ld~~ 65 (341)
T 3fpp_A 11 VRPGDLQQSVLATGKLDALR-KVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPE 65 (341)
T ss_dssp --CCCCCCEEEEEEEEEESS-EEECCCSSCEEEEEECCCTTCEECTTCEEEEECCH
T ss_pred EEEeceeEEEEEEEEEEeeE-EEEEeccCCcEEEEEEeCCCCEECCCCEEEEEChH
Confidence 45555444445667888764 46899999999999999999999999999999753
No 64
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=95.03 E-value=0.051 Score=47.06 Aligned_cols=65 Identities=14% Similarity=0.180 Sum_probs=49.4
Q ss_pred eEEeCCcCeEEEecccccCCCCCCccCCCCeE----ecCCeEEEEEecCeeeeeecCCCeEEE-----------------
Q 024168 183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTV----REGQVLCYIEQLGGEIPIESDIAGEVI----------------- 241 (271)
Q Consensus 183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V----~~Gq~l~~IEamK~~~~V~Ap~~G~V~----------------- 241 (271)
..|.||+.|.+..-. ++-|.| --|+-+++.=.. ..|.||++|+|.
T Consensus 35 ~~i~aPv~G~vi~L~-----------eV~D~vFs~~~mGdG~AI~P~~---g~v~AP~dG~V~~vfpT~HAigi~s~~G~ 100 (183)
T 3our_B 35 IEIIAPLSGEIVNIE-----------DVPDVVFAEKIVGDGIAIKPTG---NKMVAPVNGTIGKIFETNHAFSIESDDGV 100 (183)
T ss_dssp EEEECSSCEEEEEGG-----------GSSCHHHHTTSSCEEEEEEECS---SEEECSSSEEEEEECTTSSEEEEEETTSC
T ss_pred eEEEeecceEEEEch-----------hCcChHhcccCccCeEEEEcCC---CEEEeCCCeEEEEECCCCCEEEEEeCCCC
Confidence 579999999987432 444444 137777776433 479999999998
Q ss_pred ------------------EEecCCCCcccCCCeEEEEe
Q 024168 242 ------------------KILRKDGDPIGYGDPLIVIL 261 (271)
Q Consensus 242 ------------------~Ilv~~Gd~V~~Gq~L~~I~ 261 (271)
+.+|+.||.|..||+|+++-
T Consensus 101 EvLIHIGiDTV~L~G~gF~~~V~~Gd~Vk~Gd~L~~fD 138 (183)
T 3our_B 101 ELFVHFGIDTVELKGEGFTRIAEEGQTVKAGDTVIEFD 138 (183)
T ss_dssp EEEEECSBSGGGGTTTTEEECSCTTCEECTTCEEEEEC
T ss_pred EEEEEecccccccCCccceEEEeCcCEEcCCCEEEEEC
Confidence 55688999999999999875
No 65
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=95.03 E-value=0.011 Score=42.78 Aligned_cols=30 Identities=20% Similarity=0.392 Sum_probs=27.5
Q ss_pred cCCCeEEEEEecCCCCcccCCCeEEEEecC
Q 024168 234 SDIAGEVIKILRKDGDPIGYGDPLIVILPS 263 (271)
Q Consensus 234 Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~ 263 (271)
++.+|+|.+++++.||.|..||+|+.++..
T Consensus 12 ~~~~G~v~~~~v~~G~~V~~G~~l~~ie~~ 41 (77)
T 2l5t_A 12 GVTEGEIVRWDVKEGDMVEKDQDLVEVMTD 41 (77)
T ss_dssp SCCCEEEEECSCCTTCEECSCCCCCEEESS
T ss_pred CCccEEEEEEEeCCCCEECCCCEEEEEEcc
Confidence 568999999999999999999999999853
No 66
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=94.99 E-value=0.025 Score=53.36 Aligned_cols=51 Identities=20% Similarity=0.343 Sum_probs=43.2
Q ss_pred CCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEe-----------------------------cCCCCccc
Q 024168 202 KRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKIL-----------------------------RKDGDPIG 252 (271)
Q Consensus 202 P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Il-----------------------------v~~Gd~V~ 252 (271)
-++..+|+.|+.|++||+||.=+ ||.|+++|+|.+.. ++||+.|.
T Consensus 59 yga~l~v~~g~~V~~g~~la~wd------pii~e~~G~v~~~~~~~~p~i~i~d~~g~~~y~lp~ga~l~~~v~~g~~v~ 132 (352)
T 2xhc_A 59 PKAKLHVNNGKDVNKGDLIAEEP------PIYARRSGVIVDVKNVRKIVVETIDRKYTKTYYIPESAGIEPGLRVGTKVK 132 (352)
T ss_dssp TTCEESCCTTCEECTTCEEEEEC------CEECSSCEEEEEEEEEEEEEEECTTCSSEEEEEEEGGGCBCTTCCTTCEEC
T ss_pred CCCEEEecCCCEEcCCCEEEEec------cEEEecceEEEeeccCCceEEEEEcCCCCEEEEcCCCcEEEEecCCCCEEc
Confidence 35667899999999999999876 89999999886543 78888888
Q ss_pred CCCeEE
Q 024168 253 YGDPLI 258 (271)
Q Consensus 253 ~Gq~L~ 258 (271)
.|++|+
T Consensus 133 ~G~vla 138 (352)
T 2xhc_A 133 QGLPLS 138 (352)
T ss_dssp TTCBSB
T ss_pred cCcEEe
Confidence 888887
No 67
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=94.61 E-value=0.02 Score=52.93 Aligned_cols=44 Identities=20% Similarity=0.322 Sum_probs=37.4
Q ss_pred CeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168 218 QVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILP 262 (271)
Q Consensus 218 q~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~ 262 (271)
...|.|++.. ...|.++++|+|.++++++|+.|..||+|++|..
T Consensus 33 ~~~G~v~~~~-~~~v~a~v~G~V~~v~v~~Gd~V~kGq~L~~ld~ 76 (369)
T 1vf7_A 33 ELPGRTNAFR-IAEVRPQVNGIILKRLFKEGSDVKAGQQLYQIDP 76 (369)
T ss_dssp EEEEECEESC-EEEECCSSCEEEEECCSCSSEEECTTSEEEEECC
T ss_pred EEEEEEEeee-EEEEEeeCceEEEEEEcCCCCEEcCCCEEEEECc
Confidence 3456667643 4689999999999999999999999999999975
No 68
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=94.45 E-value=0.032 Score=40.62 Aligned_cols=31 Identities=26% Similarity=0.336 Sum_probs=28.2
Q ss_pred eecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168 232 IESDIAGEVIKILRKDGDPIGYGDPLIVILP 262 (271)
Q Consensus 232 V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~ 262 (271)
+-++..|+|.+++++.||.|..||+|+.++.
T Consensus 10 ~g~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~ 40 (81)
T 1gjx_A 10 IGGHENVDIIAVEVNVGDTIAVDDTLITLET 40 (81)
T ss_dssp CSSCSSEEEEEECCCSSCBCCSSCCCEEEEC
T ss_pred CCCCCcEEEEEEEcCCCCEECCCCEEEEEEe
Confidence 4467899999999999999999999999974
No 69
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=94.42 E-value=0.054 Score=40.24 Aligned_cols=28 Identities=29% Similarity=0.306 Sum_probs=25.9
Q ss_pred CCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168 235 DIAGEVIKILRKDGDPIGYGDPLIVILP 262 (271)
Q Consensus 235 p~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~ 262 (271)
...|+|.+++++.||.|..||+|+.|+.
T Consensus 17 ~~~G~v~~~~v~~Gd~V~~G~~l~~ie~ 44 (87)
T 3crk_C 17 MTMGTVQRWEKKVGEKLSEGDLLAEIET 44 (87)
T ss_dssp CCEEEEEEECSCTTCEECTTCEEEEEEC
T ss_pred CCcEEEEEEEcCCCCEEcCCCEEEEEEC
Confidence 3589999999999999999999999985
No 70
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=94.37 E-value=0.045 Score=41.51 Aligned_cols=27 Identities=19% Similarity=0.170 Sum_probs=25.6
Q ss_pred CCeEEEEEecCCCCcccCCCeEEEEec
Q 024168 236 IAGEVIKILRKDGDPIGYGDPLIVILP 262 (271)
Q Consensus 236 ~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~ 262 (271)
.+|+|.+++++.||.|..||+|+.|+.
T Consensus 17 ~~G~v~~~~v~~Gd~V~~G~~l~~ie~ 43 (93)
T 1k8m_A 17 REVTVKEWYVKEGDTVSQFDSICEVQS 43 (93)
T ss_dssp CCEEEEEECCCTTCEECSSSCCEEEEC
T ss_pred CCEEEEEEEcCCcCEECCCCEEEEEEc
Confidence 589999999999999999999999985
No 71
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=94.29 E-value=0.039 Score=43.24 Aligned_cols=35 Identities=23% Similarity=0.333 Sum_probs=29.3
Q ss_pred eeeeeecC------CCeEEEEEecCCCCcccCCCeEEEEec
Q 024168 228 GEIPIESD------IAGEVIKILRKDGDPIGYGDPLIVILP 262 (271)
Q Consensus 228 ~~~~V~Ap------~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~ 262 (271)
+..+|+.| ..|+|.+++++.||.|..||+|+.|+.
T Consensus 6 ~~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~L~~iE~ 46 (108)
T 2dne_A 6 SGQKVPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVET 46 (108)
T ss_dssp CCEEEECCCCSSSCCEEEEEECSSCTTCEECTTSEEEEEEC
T ss_pred cceEEecCCCCCCcccEEEEEEEcCCCCEecCCCEEEEEEc
Confidence 34455544 589999999999999999999999985
No 72
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=94.16 E-value=0.052 Score=51.22 Aligned_cols=53 Identities=15% Similarity=0.113 Sum_probs=40.8
Q ss_pred CCeEecCCeEEEEEec-CeeeeeecCCCeEEEEEec-CCCCcccCCCeEEEEecC
Q 024168 211 KQTVREGQVLCYIEQL-GGEIPIESDIAGEVIKILR-KDGDPIGYGDPLIVILPS 263 (271)
Q Consensus 211 Gd~V~~Gq~l~~IEam-K~~~~V~Ap~~G~V~~Ilv-~~Gd~V~~Gq~L~~I~~~ 263 (271)
|+.-..=...|.|+.. .-...|.++++|+|.++.+ ++||.|..||+|++|...
T Consensus 102 ~~~~~~v~~~G~V~~~~~~~~~v~a~~~G~V~~v~V~~~Gd~VkkGq~L~~ld~~ 156 (413)
T 3ne5_B 102 GPLTFAQSFPANVSYNEYQYAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLTIP 156 (413)
T ss_dssp ECCEEEEEEEEEEEEEEEEEEEECCSSCEEEEEECSCCTTCEECTTCEEEEEECC
T ss_pred eecceEEEEEEEEEECCCceEEEecccCEEEEEEEeCCCCCEEcCCCEEEEEcCH
Confidence 3333334456677642 3457899999999999998 999999999999999843
No 73
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=94.09 E-value=0.025 Score=41.08 Aligned_cols=29 Identities=21% Similarity=0.262 Sum_probs=26.8
Q ss_pred cCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168 234 SDIAGEVIKILRKDGDPIGYGDPLIVILP 262 (271)
Q Consensus 234 Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~ 262 (271)
++.+|+|.+++++.||.|..||+|+.++.
T Consensus 12 ~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~ 40 (79)
T 1ghj_A 12 SIADGTVATWHKKPGEAVKRDELIVDIET 40 (79)
T ss_dssp SCSCEEECCCSSCTTSEECSSCEEEEEEC
T ss_pred CCCCEEEEEEEcCCCCEECCCCEEEEEEc
Confidence 45799999999999999999999999985
No 74
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=94.03 E-value=0.017 Score=52.70 Aligned_cols=55 Identities=20% Similarity=0.299 Sum_probs=43.8
Q ss_pred cCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEecC
Q 024168 208 CKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPS 263 (271)
Q Consensus 208 V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~ 263 (271)
|+.|+.-..=..-|.|++.. ...|.++++|+|.++++++|+.|..||+|++|...
T Consensus 12 v~~~~~~~~v~~~G~v~~~~-~~~v~~~~~G~V~~v~v~~G~~V~~Gq~L~~ld~~ 66 (369)
T 4dk0_A 12 VKRGNIEKNVVATGSIESIN-TVDVGAQVSGKITKLYVKLGQQVKKGDLLAEIDST 66 (369)
T ss_dssp CCEECCCCCCEEEEEEECSS-CCCBCCCSCSBCCEECCCTTSCCCSSCCCEECCCH
T ss_pred EEecceeEEEEEeEEEEeee-eEEEecCCCcEEEEEEECCCCEECCCCEEEEEcCH
Confidence 44455555555667787654 46899999999999999999999999999999753
No 75
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=93.85 E-value=0.0048 Score=45.85 Aligned_cols=33 Identities=21% Similarity=0.233 Sum_probs=29.9
Q ss_pred eeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168 230 IPIESDIAGEVIKILRKDGDPIGYGDPLIVILP 262 (271)
Q Consensus 230 ~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~ 262 (271)
.+|++|.-|+|.+++++.|+.|..||+|+.|+.
T Consensus 3 ~~i~~p~~G~v~~~~v~~Gd~V~~G~~L~~ie~ 35 (85)
T 2k7v_A 3 KEVNVPDIVEVTEVMVKVGDKVAAEQSLITVEG 35 (85)
T ss_dssp SCCCCCSCCCCCSCCCSSSCCCCCSSSCCCCSC
T ss_pred cEEECCCeEEEEEEEcCCCCEEcCCCEEEEEEc
Confidence 478888889999999999999999999998864
No 76
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}
Probab=93.75 E-value=0.025 Score=49.34 Aligned_cols=51 Identities=18% Similarity=0.255 Sum_probs=43.3
Q ss_pred CCCCCc--cCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEE--------------------------E--ecCCCCcc
Q 024168 202 KRAPPS--CKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIK--------------------------I--LRKDGDPI 251 (271)
Q Consensus 202 P~~~~~--V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~--------------------------I--lv~~Gd~V 251 (271)
.++-.. |+.|+.|++||+|+ -...|-|+++|+|.- + +|.+||.|
T Consensus 77 vgA~l~~~V~dG~~V~~GdvLA------Kd~AIiaEIdG~V~fgkgkrrivI~~~~Ge~~eylIPk~k~i~~~V~eGd~V 150 (193)
T 2xha_A 77 ESAGIEPGLRVGTKVKQGLPLS------KNEEYICELDGKIVEIERMKKVVVQTPDGEQDVYYIPLDVFDRDRIKKGKEV 150 (193)
T ss_dssp GGGCCCTTCCTTCEECTTSBSS------TTSCSBCCSSEEEEEEEEEEEEEEECTTSCEEEEEEEGGGCCTTTSCTTCEE
T ss_pred CCCEEEEEcCCCCEEcCCCEEe------cCCeEEEccceEEEECCCeEEEEEECCCCCEEEEEeCCCCccccccCCCCEE
Confidence 356777 99999999999999 235789999998862 4 89999999
Q ss_pred cCCCeEE
Q 024168 252 GYGDPLI 258 (271)
Q Consensus 252 ~~Gq~L~ 258 (271)
+.|++|.
T Consensus 151 ~~Ge~L~ 157 (193)
T 2xha_A 151 KQGEMLA 157 (193)
T ss_dssp CTTCEEE
T ss_pred CCCCCcc
Confidence 9999997
No 77
>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}
Probab=93.46 E-value=0.093 Score=44.81 Aligned_cols=41 Identities=24% Similarity=0.294 Sum_probs=36.5
Q ss_pred CccCCCCeEecCCeEEEEEecCeee-eeecCCCeEEEEEecC
Q 024168 206 PSCKEKQTVREGQVLCYIEQLGGEI-PIESDIAGEVIKILRK 246 (271)
Q Consensus 206 ~~V~~Gd~V~~Gq~l~~IEamK~~~-~V~Ap~~G~V~~Ilv~ 246 (271)
+++.+|+.|.+|+.++.|.+.|... -|+||++|+|+-+.--
T Consensus 114 ~i~~~G~rV~kgd~lA~i~T~KGEVR~i~spv~G~Vv~v~e~ 155 (169)
T 3d4r_A 114 PIMDFGFRVLKGYRLATLESKKGDLRYVNSPVSGTVIFMNEI 155 (169)
T ss_dssp ECCCCSEEECTTCEEEEEECTTCCEEEEECSSSEEEEEEEEE
T ss_pred EEcCcCcEeccCCeEEEEEecCceEEEecCCCcEEEEEEEec
Confidence 5789999999999999999999876 5999999999988633
No 78
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.32 E-value=0.071 Score=40.89 Aligned_cols=27 Identities=33% Similarity=0.615 Sum_probs=25.4
Q ss_pred CCeEEEEEecCCCCcccCCCeEEEEec
Q 024168 236 IAGEVIKILRKDGDPIGYGDPLIVILP 262 (271)
Q Consensus 236 ~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~ 262 (271)
..|+|.+++++.||.|..||+|+.|+.
T Consensus 20 ~~G~i~~~~v~~Gd~V~~G~~L~~ie~ 46 (98)
T 2dnc_A 20 EEGNIVKWLKKEGEAVSAGDALCEIET 46 (98)
T ss_dssp SEECEEEESSCTTCEECTTSEEEEEEC
T ss_pred ccEEEEEEEcCCCCEeCCCCEEEEEEc
Confidence 589999999999999999999999985
No 79
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=93.11 E-value=0.064 Score=38.77 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=25.5
Q ss_pred CeEEEEEecCCCCcccCCCeEEEEecC
Q 024168 237 AGEVIKILRKDGDPIGYGDPLIVILPS 263 (271)
Q Consensus 237 ~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~ 263 (271)
+|+|.+++++.|+.|..||+|+.|+..
T Consensus 14 ~G~v~~~~v~~G~~V~~G~~l~~ie~~ 40 (80)
T 1qjo_A 14 EVEVTEVMVKVGDKVAAEQSLITVEGD 40 (80)
T ss_dssp CEEEEECCCCTTCEECBTSEEEEEESS
T ss_pred CEEEEEEEcCCCCEECCCCEEEEEEcC
Confidence 999999999999999999999999854
No 80
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=92.90 E-value=0.12 Score=41.92 Aligned_cols=27 Identities=30% Similarity=0.354 Sum_probs=25.3
Q ss_pred CCeEEEEEecCCCCcccCCCeEEEEec
Q 024168 236 IAGEVIKILRKDGDPIGYGDPLIVILP 262 (271)
Q Consensus 236 ~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~ 262 (271)
..|+|.+++++.||.|..||+|+.|+.
T Consensus 40 ~~G~V~~~~V~~Gd~V~~Gd~L~~iEa 66 (128)
T 1y8o_B 40 TMGTVQRWEKKVGEKLSEGDLLAEIET 66 (128)
T ss_dssp SEEEEEEECSCTTCEECTTCEEEEEEC
T ss_pred ccEEEEEEecCCCCEecCCCEEEEEEc
Confidence 579999999999999999999999985
No 81
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=92.82 E-value=0.081 Score=44.38 Aligned_cols=79 Identities=13% Similarity=0.091 Sum_probs=46.5
Q ss_pred eEEeCCcCeEEEecc-------------------------cccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCC
Q 024168 183 VILESPKVGYFRRSR-------------------------TIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIA 237 (271)
Q Consensus 183 ~~V~sP~vG~f~~~~-------------------------s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~ 237 (271)
..|+||..|++..-. .-+|..-..+|++||+|++||.|+.+.-..+...=.+...
T Consensus 45 ~~v~AP~~G~V~~v~~t~HAigi~~~~G~evLiHiGidTv~l~G~gF~~~V~~Gd~V~~G~~L~~~d~~~i~~~g~~~~t 124 (154)
T 2gpr_A 45 NDFHAPVSGKLVTAFPTKHAFGIQTKSGVEILLHIGLDTVSLDGNGFESFVTQDQEVNAGDKLVTVDLKSVAKKVPSIKS 124 (154)
T ss_dssp SEEECSSCEEEEECCTTCSEEEEECTTSCEEEEECSSSGGGGTTCSEEECCCTTCEECTTCEEEEECHHHHHHHSSCCCE
T ss_pred CcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECcchhhcCCCceEEEEcCCCEEcCCCEEEEECHHHHHhcCCCCeE
Confidence 479999999886421 0112233468999999999999999873222211111111
Q ss_pred eE------EEEEecCCCCcccCCCeEEEEe
Q 024168 238 GE------VIKILRKDGDPIGYGDPLIVIL 261 (271)
Q Consensus 238 G~------V~~Ilv~~Gd~V~~Gq~L~~I~ 261 (271)
=+ +..+....+..|..|++|+.++
T Consensus 125 ~vvvtn~~~~~~~~~~~~~v~~g~~~~~~~ 154 (154)
T 2gpr_A 125 PIIFTNNGGKTLEIVKMGEVKQGDVVAILK 154 (154)
T ss_dssp EEEEEECSSCCCSCBCCEEECTTCEEEEEC
T ss_pred EEEEECCCcceEEEccCceEcCCCEEEEeC
Confidence 11 1122233455678899988763
No 82
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=92.57 E-value=0.099 Score=52.86 Aligned_cols=34 Identities=18% Similarity=0.248 Sum_probs=31.5
Q ss_pred eeeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168 229 EIPIESDIAGEVIKILRKDGDPIGYGDPLIVILP 262 (271)
Q Consensus 229 ~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~ 262 (271)
...|.||..|+|.+++|+.||.|+.||+|+.|+.
T Consensus 612 ~~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iEa 645 (681)
T 3n6r_A 612 SKMLLCPMPGLIVKVDVEVGQEVQEGQALCTIEA 645 (681)
T ss_dssp CSEEECCSCEEEEEECCCTTCEECTTCEEEEEEC
T ss_pred CCeEECCCcEEEEEEEeCCCCEEcCCCEEEEEEe
Confidence 3469999999999999999999999999999984
No 83
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=92.35 E-value=0.19 Score=36.23 Aligned_cols=35 Identities=26% Similarity=0.379 Sum_probs=29.9
Q ss_pred ceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEec
Q 024168 182 LVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQL 226 (271)
Q Consensus 182 ~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEam 226 (271)
...|+||..|++.. .++++|+.|..|++|+.|+..
T Consensus 41 ~~~i~Ap~~G~v~~----------~~v~~G~~V~~g~~l~~i~~~ 75 (79)
T 1iyu_A 41 SMEVPSPKAGVVKS----------VSVKLGDKLKEGDAIIELEPA 75 (79)
T ss_dssp EEEEECSSSSEEEE----------ESCCTTCEEETTSEEEEEECC
T ss_pred EEEEECCCCEEEEE----------EEeCCCCEECCCCEEEEEecC
Confidence 46899999999864 468999999999999998753
No 84
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=91.58 E-value=0.25 Score=42.52 Aligned_cols=47 Identities=17% Similarity=0.152 Sum_probs=40.2
Q ss_pred CCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCc
Q 024168 202 KRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDP 250 (271)
Q Consensus 202 P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~ 250 (271)
.++..+|+.|+.|++||+||.. ++-..+|-++++|+|.---+.+|..
T Consensus 60 yGa~L~V~dG~~V~~G~~laew--Dp~t~pIisE~~G~V~f~dii~G~t 106 (190)
T 2auk_A 60 YGAVLAKGDGEQVAGGETVANW--DPHTMPVITEVSGFVRFTDMIDGQT 106 (190)
T ss_dssp TTCEESSCTTCEECTTCEEEEC--CSSEEEEECSSCEEEEEESCCBTTT
T ss_pred CCCEEEecCCCEEcCCCEEEEE--cCcCCcEEeccccEEEEEeccCCcc
Confidence 5678899999999999999966 5788899999999998777666643
No 85
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=90.70 E-value=0.041 Score=40.15 Aligned_cols=28 Identities=21% Similarity=0.213 Sum_probs=25.8
Q ss_pred CCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168 235 DIAGEVIKILRKDGDPIGYGDPLIVILP 262 (271)
Q Consensus 235 p~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~ 262 (271)
..+|+|.+++++.||.|..||+|+.|+.
T Consensus 14 ~~~G~v~~~~v~~Gd~V~~G~~l~~ie~ 41 (80)
T 1pmr_A 14 VADATVATWHKKPGDAVVRDEVLVEIET 41 (80)
T ss_dssp CSCEECCBCCCCTTCCBSSSCCBCBCCS
T ss_pred CccEEEEEEECCCcCEECCCCEEEEEEc
Confidence 4689999999999999999999999974
No 86
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=89.55 E-value=0.23 Score=50.88 Aligned_cols=33 Identities=30% Similarity=0.455 Sum_probs=31.1
Q ss_pred eeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168 230 IPIESDIAGEVIKILRKDGDPIGYGDPLIVILP 262 (271)
Q Consensus 230 ~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~ 262 (271)
..|.||+.|+|.+++|+.||.|..||+|+.|+.
T Consensus 650 ~~v~ap~~G~V~~v~V~~Gd~V~~Gq~L~~iEa 682 (718)
T 3bg3_A 650 GQIGAPMPGKVIDIKVVAGAKVAKGQPLCVLSA 682 (718)
T ss_dssp SCEECSSCEEEEEECSCTTCCBCTTCCCEEEES
T ss_pred ceEeCCCCeEEEEEEeCCCCeeCCCCEEEEEec
Confidence 469999999999999999999999999999984
No 87
>2bco_A Succinylglutamate desuccinylase; NESG, VPR14, structural genomics, PSI, protein structure initiative; 2.33A {Vibrio parahaemolyticus} SCOP: c.56.5.7 PDB: 2g9d_A
Probab=89.00 E-value=0.53 Score=43.71 Aligned_cols=65 Identities=9% Similarity=0.062 Sum_probs=49.4
Q ss_pred eEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168 183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILP 262 (271)
Q Consensus 183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~ 262 (271)
..|.+|..|.+..- .+.++.|+.|++||+|+.+-. .+|.+|.+|.+.-. . .-.|..|+.++.+-.
T Consensus 264 ~~v~a~~~g~~~~~--------~~~~~~g~~V~~G~~La~i~d----~~v~a~~dG~~i~~--p-~p~V~~G~~~~~i~~ 328 (350)
T 2bco_A 264 RTIVRLHDDFDFMF--------DDNVENFTSFVHGEVFGHDGD----KPLMAKNDNEAIVF--P-NRHVAIGQRAALMVC 328 (350)
T ss_dssp EEEECCSSSEEESS--------CTTCCBTEECCTTCEEEEETT----EEEECSSSSCEEES--C-CTTCCTTSEEEEEEE
T ss_pred EEEEcCCCCeEEec--------cccccCCCEeCCCCEEEEECC----EEEEeCCCCEEEEe--c-CCCCCCCcEEEEEEE
Confidence 46788877765422 235689999999999999853 78999999987653 2 468889998777653
No 88
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=88.88 E-value=0.32 Score=52.14 Aligned_cols=33 Identities=18% Similarity=0.375 Sum_probs=31.2
Q ss_pred eeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168 230 IPIESDIAGEVIKILRKDGDPIGYGDPLIVILP 262 (271)
Q Consensus 230 ~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~ 262 (271)
..|.||..|+|.+++|+.||.|+.||+|+.|+.
T Consensus 1078 ~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~iea 1110 (1150)
T 3hbl_A 1078 SHIGAQMPGSVTEVKVSVGETVKANQPLLITEA 1110 (1150)
T ss_dssp SEEECSSSEEEEEECCCTTCEECTTCEEEEEES
T ss_pred ceeecCceEEEEEEEeCCCCEECCCCEEEEEEe
Confidence 479999999999999999999999999999984
No 89
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=88.51 E-value=0.13 Score=48.42 Aligned_cols=51 Identities=18% Similarity=0.236 Sum_probs=39.9
Q ss_pred CCCCCc--cCCCCeEecCCeEEEEEecCeeeeeecCCCeEEE------------------E----------EecCCCCcc
Q 024168 202 KRAPPS--CKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVI------------------K----------ILRKDGDPI 251 (271)
Q Consensus 202 P~~~~~--V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~------------------~----------Ilv~~Gd~V 251 (271)
.++-.. |+.|+.|++||+|+ | ...|-|+++|+|. + ++|.+||.|
T Consensus 117 ~ga~l~~~v~~g~~v~~G~vla-----k-~~aiiaeidG~V~fg~~kr~i~i~~~~g~~~eylip~~~~k~~~v~~Gd~V 190 (352)
T 2xhc_A 117 ESAGIEPGLRVGTKVKQGLPLS-----K-NEEYICELDGKIVEIERMKKVVVQTPDGEQDVYYIPLDVFDRDRIKKGKEV 190 (352)
T ss_dssp GGGCBCTTCCTTCEECTTCBSB-----S-SSSCBCCSCEEEEEEEEEEEEEEECTTSCEEEEEEEGGGCCTTTSCTTCEE
T ss_pred CCcEEEEecCCCCEEccCcEEe-----c-CceEEeccceEEEECCcEEEEEEECCCCCEEEEEEcCCCCcCeeeCCCCEE
Confidence 356677 99999999999998 2 3567788888776 1 137788999
Q ss_pred cCCCeEE
Q 024168 252 GYGDPLI 258 (271)
Q Consensus 252 ~~Gq~L~ 258 (271)
..|++|.
T Consensus 191 ~~G~~l~ 197 (352)
T 2xhc_A 191 KQGEMLA 197 (352)
T ss_dssp CTTCEEE
T ss_pred eCCCCcc
Confidence 9999887
No 90
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=88.03 E-value=0.39 Score=51.90 Aligned_cols=33 Identities=27% Similarity=0.346 Sum_probs=30.9
Q ss_pred eeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168 230 IPIESDIAGEVIKILRKDGDPIGYGDPLIVILP 262 (271)
Q Consensus 230 ~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~ 262 (271)
..|.||+.|+|.+++|+.||.|+.||+|+.|+.
T Consensus 1168 ~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iEa 1200 (1236)
T 3va7_A 1168 ELLYSEYTGRFWKPVAAVGDHVEAGDGVIIIEA 1200 (1236)
T ss_dssp EEEECSSCEEEEEESSCTTCEECSSCEEEEEEE
T ss_pred cEEeCCCcEEEEEEEcCCCCEECCCCEEEEEEe
Confidence 359999999999999999999999999999984
No 91
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=87.73 E-value=0.1 Score=52.69 Aligned_cols=33 Identities=18% Similarity=0.463 Sum_probs=0.0
Q ss_pred eeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168 230 IPIESDIAGEVIKILRKDGDPIGYGDPLIVILP 262 (271)
Q Consensus 230 ~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~ 262 (271)
..|.||..|+|.+++|+.||.|+.||+|+.|+.
T Consensus 603 ~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iEa 635 (675)
T 3u9t_A 603 GGLSAPMNGSIVRVLVEPGQTVEAGATLVVLEA 635 (675)
T ss_dssp ---------------------------------
T ss_pred CeEECCCCEEEEEEEeCCCCEEcCCCEEEEEEe
Confidence 469999999999999999999999999999874
No 92
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=86.12 E-value=0.55 Score=50.41 Aligned_cols=33 Identities=18% Similarity=0.427 Sum_probs=28.1
Q ss_pred eeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168 230 IPIESDIAGEVIKILRKDGDPIGYGDPLIVILP 262 (271)
Q Consensus 230 ~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~ 262 (271)
..|.||+.|+|.+++++.||.|..||+|+.|+.
T Consensus 1096 ~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~iEa 1128 (1165)
T 2qf7_A 1096 AHVGAPMPGVISRVFVSSGQAVNAGDVLVSIEA 1128 (1165)
T ss_dssp TEEECSSCEEEEEECCSSCCCC---CEEEEEEC
T ss_pred ceeeCCCCeEEEEEEcCCcCEeCCCCEEEEEEc
Confidence 469999999999999999999999999999973
No 93
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*
Probab=85.23 E-value=1.1 Score=49.06 Aligned_cols=38 Identities=16% Similarity=0.241 Sum_probs=32.2
Q ss_pred CCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEE
Q 024168 202 KRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVI 241 (271)
Q Consensus 202 P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~ 241 (271)
.++..+|+.||.|++||+||.-+ .-..+|.|+++|+|.
T Consensus 999 ~gs~l~v~~g~~V~~g~~ia~wD--p~~~piise~~G~v~ 1036 (1407)
T 3lu0_D 999 YGAVLAKGDGEQVAGGETVANWD--PHTMPVITEVSGFVR 1036 (1407)
T ss_dssp TTCEESSCSSCEECTTCEEEECC--SSCCCEECSSCEEEE
T ss_pred CCCEEEEcCCCEecCCCEEEEEe--cCceeEEeccceEEE
Confidence 35667899999999999999875 556799999999885
No 94
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=79.07 E-value=0.97 Score=38.08 Aligned_cols=42 Identities=26% Similarity=0.284 Sum_probs=30.6
Q ss_pred eEEeCCcCeEEEecc-------------------------cccCCCCCCccCCCCeEecCCeEEEEE
Q 024168 183 VILESPKVGYFRRSR-------------------------TIKGKRAPPSCKEKQTVREGQVLCYIE 224 (271)
Q Consensus 183 ~~V~sP~vG~f~~~~-------------------------s~~~P~~~~~V~~Gd~V~~Gq~l~~IE 224 (271)
..|+||..|++..-. .-+|.+-..+|++||+|++||.|+.+.
T Consensus 50 ~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHIGidTV~l~G~gF~~~V~~Gd~V~~G~~L~~~d 116 (162)
T 1ax3_A 50 GIVVSPVRGKILNVFPTKHAIGLQSDGGREILIHFGIDTVSLKGEGFTSFVSEGDRVEPGQKLLEVD 116 (162)
T ss_dssp SEEEESCCEEEEECCSSSSEEEEESSSSCEEEEECSSSTTTTTTTTEEESCCCCSEECSEEEEEEEC
T ss_pred CcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECccchhcCCCccEEEEeCCCEEcCCCEEEEEC
Confidence 378999999875431 011223345899999999999999987
No 95
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=77.00 E-value=1.7 Score=36.51 Aligned_cols=42 Identities=19% Similarity=0.242 Sum_probs=30.4
Q ss_pred eEEeCCcCeEEEecc-------------------------cccCCCCCCccCCCCeEecCCeEEEEE
Q 024168 183 VILESPKVGYFRRSR-------------------------TIKGKRAPPSCKEKQTVREGQVLCYIE 224 (271)
Q Consensus 183 ~~V~sP~vG~f~~~~-------------------------s~~~P~~~~~V~~Gd~V~~Gq~l~~IE 224 (271)
..|+||..|++..-. .-+|..-..+|++||.|++||.|+.+.
T Consensus 50 ~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHiGidTV~l~G~gF~~~V~~Gd~V~~G~~L~~~d 116 (161)
T 1f3z_A 50 NKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGEGFKRIAEEGQRVKVGDTVIEFD 116 (161)
T ss_dssp SEEECSSSEEEEEECTTSSEEEEEETTSCEEEEECSBSGGGGTTTTEEECSCTTCEECTTCEEEEEC
T ss_pred CcEECCCCeEEEEEccCCeEEEEEeCCCCEEEEEECccchhcCCCccEEEEeCcCEECCCCEEEEEC
Confidence 368999999875331 011233345899999999999999987
No 96
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=75.69 E-value=1.9 Score=37.19 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=21.4
Q ss_pred CCCCCCccCCCCeEecCCeEEEEEe
Q 024168 201 GKRAPPSCKEKQTVREGQVLCYIEQ 225 (271)
Q Consensus 201 ~P~~~~~V~~Gd~V~~Gq~l~~IEa 225 (271)
|..-.++|++||.|++||.|+...-
T Consensus 115 G~gF~~~V~~Gd~Vk~Gd~L~~fD~ 139 (183)
T 3our_B 115 GEGFTRIAEEGQTVKAGDTVIEFDL 139 (183)
T ss_dssp TTTEEECSCTTCEECTTCEEEEECH
T ss_pred CccceEEEeCcCEEcCCCEEEEECH
Confidence 4556789999999999999999873
No 97
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}
Probab=63.83 E-value=8.8 Score=35.29 Aligned_cols=37 Identities=11% Similarity=0.039 Sum_probs=30.6
Q ss_pred CeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEecCC
Q 024168 227 GGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPSF 264 (271)
Q Consensus 227 K~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~~ 264 (271)
.-..-++|+.+| +.+..+++|+.|+.||+|+.|...+
T Consensus 265 ~~~~~v~A~~~G-~~~~~~~~g~~V~~G~~La~i~d~~ 301 (354)
T 3cdx_A 265 EADAYVMAPRTG-LFEPTHYVGEEVRTGETAGWIHFVE 301 (354)
T ss_dssp CGGGEEECSSCE-EEEESCCTTCEECTTSEEEEEECTT
T ss_pred CCcEEEECCCCE-EEEEeCCCCCEeCCCCEEEEEECCC
Confidence 344568999999 5667789999999999999998654
No 98
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*
Probab=63.38 E-value=6.6 Score=36.62 Aligned_cols=34 Identities=32% Similarity=0.366 Sum_probs=30.3
Q ss_pred eeeeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168 228 GEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILP 262 (271)
Q Consensus 228 ~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~ 262 (271)
-..-|+||.+|.+. ..++-|+.|+.||+|++|..
T Consensus 289 ~~~~v~A~~~Gl~~-~~v~lGd~V~kG~~la~I~d 322 (368)
T 3fmc_A 289 NYRKFHAPKAGMVE-YLGKVGVPMKATDPLVNLLR 322 (368)
T ss_dssp GEEEEECSSCEEEE-ECSCTTCCBCTTCEEEEEEC
T ss_pred CcEEEecCCCEEEE-EeCCCCCEeCCCCEEEEEEc
Confidence 34569999999887 78999999999999999987
No 99
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=59.18 E-value=13 Score=36.33 Aligned_cols=42 Identities=17% Similarity=0.260 Sum_probs=34.1
Q ss_pred EecCeeeeeecCCCeEE-----------------------------EEEecCCCCcccCCCeEEEEecCCC
Q 024168 224 EQLGGEIPIESDIAGEV-----------------------------IKILRKDGDPIGYGDPLIVILPSFP 265 (271)
Q Consensus 224 EamK~~~~V~Ap~~G~V-----------------------------~~Ilv~~Gd~V~~Gq~L~~I~~~~~ 265 (271)
-.-+...+|+|+.+|.| +.++++.||.|+.|++|++|....+
T Consensus 367 ~~a~~~~~v~a~~~G~v~~id~~~~g~~~~~lG~gr~~~~id~~~Gi~l~~k~G~~V~~g~~l~~i~~~~~ 437 (474)
T 1uou_A 367 PRAREQEELLAPADGTVELVRALPLALVLHELGAGRAGEPLRLGVGAELLVDVGQRLRRGTPWLRVHRDGP 437 (474)
T ss_dssp CCCSEEEEEECSSCEEEEEECHHHHHHHHHHHHC------CCSSCEEEECSCTTCEECTTCEEEEEEESSS
T ss_pred CCCCeeEEEECCCCeEEEEecHHHHHHHHHHhCCCCcCCccCCCCceEEEccCCCEECCCCeEEEEEcCCh
Confidence 34556678899999988 4567889999999999999987655
No 100
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=59.14 E-value=2 Score=41.18 Aligned_cols=36 Identities=25% Similarity=0.263 Sum_probs=0.0
Q ss_pred ceEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecC
Q 024168 182 LVILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLG 227 (271)
Q Consensus 182 ~~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK 227 (271)
...|.||..|++. +.+|++||.|..||+|++|+...
T Consensus 45 ~~~i~ap~~G~v~----------~i~v~~G~~V~~G~~l~~i~~~~ 80 (428)
T 3dva_I 45 VVEIPSPVKGKVL----------EILVPEGTVATVGQTLITLDAPG 80 (428)
T ss_dssp ----------------------------------------------
T ss_pred eEEEecCCCeEEE----------EEEeCCCCEeCCCCEEEEEecCC
Confidence 3679999999984 46899999999999999998643
No 101
>3it5_A Protease LASA; metallopeptidase, beta-protein, cell membrane, cell out membrane, hydrolase, membrane, metal-binding; 2.00A {Pseudomonas aeruginosa} PDB: 3it7_A*
Probab=58.61 E-value=5.6 Score=33.68 Aligned_cols=22 Identities=14% Similarity=0.010 Sum_probs=19.3
Q ss_pred CCCccCCCCeEecCCeEEEEEe
Q 024168 204 APPSCKEKQTVREGQVLCYIEQ 225 (271)
Q Consensus 204 ~~~~V~~Gd~V~~Gq~l~~IEa 225 (271)
....|++||.|++||+|+.+-.
T Consensus 83 ~~i~V~~G~~V~~Gq~IG~vG~ 104 (182)
T 3it5_A 83 DQIQVSNGQQVSADTKLGVYAG 104 (182)
T ss_dssp ESCCCCTTCEECTTCEEEEECS
T ss_pred CccccCCCCEEcCCCEEEeecC
Confidence 3567999999999999999874
No 102
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}
Probab=58.51 E-value=9.9 Score=34.77 Aligned_cols=34 Identities=18% Similarity=0.230 Sum_probs=29.3
Q ss_pred eeeeecCCCeEEEEEecCCCCcccCCCeEEEEecC
Q 024168 229 EIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPS 263 (271)
Q Consensus 229 ~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~ 263 (271)
..-|+||.+|.+.- .++-||.|+.||+|++|...
T Consensus 257 ~~~v~A~~~Gl~~~-~v~~Gd~V~~G~~la~I~dp 290 (331)
T 3na6_A 257 DCYLFSEHDGLFEI-MIDLGEPVQEGDLVARVWSP 290 (331)
T ss_dssp CCCEECSSCEEEEE-SSCTTCEECTTCEEEEEECS
T ss_pred cEEEeCCCCeEEEE-cCCCCCEEcCCCEEEEEEcC
Confidence 45689999996654 79999999999999999865
No 103
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Probab=53.79 E-value=2.7 Score=36.98 Aligned_cols=33 Identities=21% Similarity=0.344 Sum_probs=0.0
Q ss_pred eEEeCCcCeEEEecccccCCCCCCccCCCCe-EecCCeEEEEEe
Q 024168 183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQT-VREGQVLCYIEQ 225 (271)
Q Consensus 183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~-V~~Gq~l~~IEa 225 (271)
..|.||..|++. +.+|++||. |..|++|++|+.
T Consensus 47 ~ei~Ap~~G~v~----------~i~v~~G~~~V~~G~~l~~i~~ 80 (229)
T 1zy8_K 47 VTLDASDDGILA----------KIVVEEGSKNIRLGSLIGLIVE 80 (229)
T ss_dssp --------------------------------------------
T ss_pred eEEecCCCeEEE----------EEEecCCCeeecCCCEEEEEec
Confidence 578999999884 467999997 999999999974
No 104
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=52.10 E-value=16 Score=35.23 Aligned_cols=39 Identities=26% Similarity=0.318 Sum_probs=30.7
Q ss_pred cCeeeeeecCCCeEEEEE-------------------------------ecCCCCcccCCCeEEEEecCCC
Q 024168 226 LGGEIPIESDIAGEVIKI-------------------------------LRKDGDPIGYGDPLIVILPSFP 265 (271)
Q Consensus 226 mK~~~~V~Ap~~G~V~~I-------------------------------lv~~Gd~V~~Gq~L~~I~~~~~ 265 (271)
-+...+|+|+.+|.|..| +++-||.|+.|+||++|. +++
T Consensus 335 a~~~~~v~a~~~G~v~~id~~~~g~~~~~lGagr~~~~d~id~~~Gi~l~~~~G~~V~~g~~l~~i~-~~~ 404 (436)
T 3h5q_A 335 AQYQIEYKAKKSGYVTELVSNDIGVASMMLGAGRLTKEDDIDLAVGIVLNKKIGDKVEEGESLLTIH-SNR 404 (436)
T ss_dssp CSEEEEEECSSCEEEEEECHHHHHHHHHHTTTSCSSTTCCCCTTCEEEESCCTTCEECTTSEEEEEE-ESS
T ss_pred CCeEEEEecCCCEEEEEechHHHHHHHHHcCCCcCCCCCCCCCCCceEEecCCcCEeCCCCeEEEEe-CCh
Confidence 455567888888888754 567899999999999999 544
No 105
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=51.55 E-value=18 Score=34.67 Aligned_cols=41 Identities=22% Similarity=0.298 Sum_probs=32.8
Q ss_pred ecCeeeeeecCCCeEEE-------------------------------EEecCCCCcccCCCeEEEEecCCC
Q 024168 225 QLGGEIPIESDIAGEVI-------------------------------KILRKDGDPIGYGDPLIVILPSFP 265 (271)
Q Consensus 225 amK~~~~V~Ap~~G~V~-------------------------------~Ilv~~Gd~V~~Gq~L~~I~~~~~ 265 (271)
.-+...+|+|+.+|.|. .+..+-||.|+.|+||++|....+
T Consensus 331 ~~~~~~~v~a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~~d~~~Gi~~~~k~g~~v~~g~~l~~i~~~~~ 402 (433)
T 1brw_A 331 KAAYTSTVTAAADGYVAEMAADDIGTAAMWLGAGRAKKEDVIDLAVGIVLHKKIGDRVQKGEALATIHSNRP 402 (433)
T ss_dssp CCSEEEEEECSSSEEEEEECHHHHHHHHHHHTTSCSSTTCCCCTTCEEEESCCTTCEECTTCEEEEEEESSS
T ss_pred CCCeEEEEecCCCeEEEEechHHHHHHHHHcCCCcCCCCCCCCcCcCeeEeccCCCEECCCCeEEEEEcCCc
Confidence 34556678888888886 456788999999999999987655
No 106
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=49.03 E-value=19 Score=34.56 Aligned_cols=39 Identities=26% Similarity=0.432 Sum_probs=31.7
Q ss_pred cCeeeeeecCCCeEEE-------------------------------EEecCCCCcccCCCeEEEEecCCC
Q 024168 226 LGGEIPIESDIAGEVI-------------------------------KILRKDGDPIGYGDPLIVILPSFP 265 (271)
Q Consensus 226 mK~~~~V~Ap~~G~V~-------------------------------~Ilv~~Gd~V~~Gq~L~~I~~~~~ 265 (271)
-+ ..+|+|+.+|.|. .+..+-||.|+.|+||++|..+.+
T Consensus 325 a~-~~~v~a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~id~~~Gi~~~~k~g~~v~~g~~l~~i~~~~~ 394 (423)
T 2dsj_A 325 AE-EHPLRAEREGVVREVDAYKVGLAVLALGGGRKRKGEPIDHGVGVYLLKKPGDRVERGEALALVYHRRR 394 (423)
T ss_dssp CE-EEEEECSSCEEEEEECHHHHHHHHHHHTSSCSSTTCCCCTTCEEEESCCTTCEECTTSEEEEEEECSS
T ss_pred CC-eEEEecCCCeEEEEechHHHHHHHHHcCCCcCcCCCCCCcCcCeeeeccCCCEeCCCCeEEEEEeCCc
Confidence 44 5788888888886 456788999999999999987655
No 107
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*
Probab=48.30 E-value=8.7 Score=42.10 Aligned_cols=22 Identities=18% Similarity=0.258 Sum_probs=19.2
Q ss_pred CCCCCccCCCCeEecCCeEEEE
Q 024168 202 KRAPPSCKEKQTVREGQVLCYI 223 (271)
Q Consensus 202 P~~~~~V~~Gd~V~~Gq~l~~I 223 (271)
.++-..|+.|+.|++||+|+.|
T Consensus 1103 ~~a~~~v~~g~~v~~g~vlaki 1124 (1407)
T 3lu0_D 1103 GKAIVQLEDGVQISSGDTLARI 1124 (1407)
T ss_dssp TTCCCCCCSSCEECTTCEEECC
T ss_pred CCcEEEecCCCEeccCceEEec
Confidence 4577889999999999999865
No 108
>3csq_A Morphogenesis protein 1; hydrolase, infection, late protein; 1.80A {Bacteriophage phi-29}
Probab=47.32 E-value=8.8 Score=35.27 Aligned_cols=23 Identities=9% Similarity=0.161 Sum_probs=19.3
Q ss_pred CCCccCCCCeEecCCeEEEEEec
Q 024168 204 APPSCKEKQTVREGQVLCYIEQL 226 (271)
Q Consensus 204 ~~~~V~~Gd~V~~Gq~l~~IEam 226 (271)
....|++||.|++||+|+.+-.-
T Consensus 249 ~~~~V~~G~~V~~Gq~Ig~~G~t 271 (334)
T 3csq_A 249 SPLPFDVGKKLKKGDLMGHTGIG 271 (334)
T ss_dssp SSCCCCTTCEECTTSEEEECBCC
T ss_pred CcccCCCcCEECCCCEEEeecCC
Confidence 35679999999999999987643
No 109
>3nyy_A Putative glycyl-glycine endopeptidase LYTM; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE 2PE SO4; 1.60A {Ruminococcus gnavus}
Probab=46.74 E-value=8.6 Score=34.21 Aligned_cols=20 Identities=20% Similarity=0.446 Sum_probs=17.9
Q ss_pred ccCCCCeEecCCeEEEEEec
Q 024168 207 SCKEKQTVREGQVLCYIEQL 226 (271)
Q Consensus 207 ~V~~Gd~V~~Gq~l~~IEam 226 (271)
.|++||.|++||+|+.+-.-
T Consensus 183 ~V~~G~~V~~Gq~IG~vG~t 202 (252)
T 3nyy_A 183 ELEKGDPVKAGDLLGYMGDS 202 (252)
T ss_dssp SCCTTCEECTTCEEEECBCC
T ss_pred cCCCCCEECCCCEEEEECCC
Confidence 79999999999999998643
No 110
>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A
Probab=45.63 E-value=4.8 Score=32.82 Aligned_cols=33 Identities=15% Similarity=0.202 Sum_probs=28.4
Q ss_pred eeeecCCCeEEEEEec-CCCCcccCCCeEEEEec
Q 024168 230 IPIESDIAGEVIKILR-KDGDPIGYGDPLIVILP 262 (271)
Q Consensus 230 ~~V~Ap~~G~V~~Ilv-~~Gd~V~~Gq~L~~I~~ 262 (271)
.++.++.-|.|..+.+ +.|+.|..|++|+.|+.
T Consensus 37 t~~a~~~lG~i~~V~lp~vGd~V~~Gd~l~~VEs 70 (136)
T 1zko_A 37 TNHAQEQLGDVVYVDLPEVGREVKKGEVVASIES 70 (136)
T ss_dssp CHHHHHHHCSEEEEECCCTTCEECTTCEEEEEEE
T ss_pred EhhhcccCCCcEEEEecCCCCEEeCCCEEEEEEE
Confidence 4566778888988877 99999999999999984
No 111
>3tuf_B Stage II sporulation protein Q; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_B
Probab=44.29 E-value=8.7 Score=34.17 Aligned_cols=22 Identities=18% Similarity=0.178 Sum_probs=19.3
Q ss_pred CCccCCCCeEecCCeEEEEEec
Q 024168 205 PPSCKEKQTVREGQVLCYIEQL 226 (271)
Q Consensus 205 ~~~V~~Gd~V~~Gq~l~~IEam 226 (271)
...|++||.|++||+|+.+-..
T Consensus 134 ~i~Vk~Gd~V~~Gq~IG~vG~t 155 (245)
T 3tuf_B 134 EVSVEQGDKVKQNQVIGKSGKN 155 (245)
T ss_dssp EESCCTTCEECTTCEEEECBCC
T ss_pred ccccCCCCEECCCCEEEEeCCc
Confidence 4679999999999999998754
No 112
>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}
Probab=42.55 E-value=25 Score=31.80 Aligned_cols=34 Identities=21% Similarity=0.050 Sum_probs=29.1
Q ss_pred eeeecCCCeEEEEEecCCCCcccCCCeEEEEecCC
Q 024168 230 IPIESDIAGEVIKILRKDGDPIGYGDPLIVILPSF 264 (271)
Q Consensus 230 ~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~~ 264 (271)
.-++|+..|.+. -.+++|+.|+.|++|..+...+
T Consensus 258 ~~~~a~~~G~~~-~~~~~g~~V~~G~~la~i~dp~ 291 (332)
T 2qj8_A 258 DQLKSPSPGIFE-PRCSVMDEVEQGDVVGVLHPMG 291 (332)
T ss_dssp GEEECSSSEEEE-ECSCTTCEECTTCEEEEEECTT
T ss_pred eEEeCCCCeEEE-EeCCCCCEeCCCCEEEEEECCC
Confidence 357899999777 7789999999999999997644
No 113
>1qwy_A Peptidoglycan hydrolase; LYTM lysostaphin metalloprotease asparagine switch; 1.30A {Staphylococcus aureus subsp} SCOP: b.84.3.2 PDB: 2b0p_A 2b13_A* 2b44_A
Probab=40.10 E-value=12 Score=34.31 Aligned_cols=22 Identities=14% Similarity=0.271 Sum_probs=18.8
Q ss_pred CCccCCCCeEecCCeEEEEEec
Q 024168 205 PPSCKEKQTVREGQVLCYIEQL 226 (271)
Q Consensus 205 ~~~V~~Gd~V~~Gq~l~~IEam 226 (271)
...|++||.|++||+|+.+-..
T Consensus 238 ~i~Vk~Gq~V~~GqvIG~vG~T 259 (291)
T 1qwy_A 238 RLTVSAGDKVKAGDQIAYSGST 259 (291)
T ss_dssp EECCCTTCEECTTCEEEECCCC
T ss_pred ccccCCcCEECCCCEEEEECCC
Confidence 4579999999999999988643
No 114
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=39.33 E-value=19 Score=30.54 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=19.3
Q ss_pred CCCCCccCCCCeEecCCeEEEEE
Q 024168 202 KRAPPSCKEKQTVREGQVLCYIE 224 (271)
Q Consensus 202 P~~~~~V~~Gd~V~~Gq~l~~IE 224 (271)
+++...|+.|+.|++||+|+.+-
T Consensus 164 ~ga~i~v~dG~~V~~GdvLArip 186 (190)
T 2auk_A 164 GKAIVQLEDGVQISSGDTLARIP 186 (190)
T ss_dssp TTCEESSCTTCEECTTCEEEEEE
T ss_pred CCCEEEEcCCCEEcCCCEEEEcc
Confidence 56778899999999999998874
No 115
>2hsi_A Putative peptidase M23; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.90A {Pseudomonas aeruginosa PAO1}
Probab=39.04 E-value=13 Score=33.69 Aligned_cols=22 Identities=27% Similarity=0.182 Sum_probs=18.8
Q ss_pred CCccCCCCeEecCCeEEEEEec
Q 024168 205 PPSCKEKQTVREGQVLCYIEQL 226 (271)
Q Consensus 205 ~~~V~~Gd~V~~Gq~l~~IEam 226 (271)
...|++||.|++||+|+.+-..
T Consensus 231 ~i~V~~G~~V~~Gq~IG~vG~t 252 (282)
T 2hsi_A 231 KIDVKLGQQVPRGGVLGKVGAT 252 (282)
T ss_dssp EECSCTTCEECTTCEEEECCCT
T ss_pred ccccCCcCEECCCCEEEEECCC
Confidence 4579999999999999987643
No 116
>3tuf_B Stage II sporulation protein Q; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_B
Probab=37.89 E-value=26 Score=31.05 Aligned_cols=22 Identities=9% Similarity=0.055 Sum_probs=19.3
Q ss_pred EEecCCCCcccCCCeEEEEecC
Q 024168 242 KILRKDGDPIGYGDPLIVILPS 263 (271)
Q Consensus 242 ~Ilv~~Gd~V~~Gq~L~~I~~~ 263 (271)
++.|+.|+.|..||.|..+...
T Consensus 134 ~i~Vk~Gd~V~~Gq~IG~vG~t 155 (245)
T 3tuf_B 134 EVSVEQGDKVKQNQVIGKSGKN 155 (245)
T ss_dssp EESCCTTCEECTTCEEEECBCC
T ss_pred ccccCCCCEECCCCEEEEeCCc
Confidence 6789999999999999998754
No 117
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=37.65 E-value=20 Score=34.50 Aligned_cols=41 Identities=22% Similarity=0.148 Sum_probs=32.4
Q ss_pred ecCeeeeeecCCCeEEEE-------------------------------EecCCCCcccCCCeEEEEecCCC
Q 024168 225 QLGGEIPIESDIAGEVIK-------------------------------ILRKDGDPIGYGDPLIVILPSFP 265 (271)
Q Consensus 225 amK~~~~V~Ap~~G~V~~-------------------------------Ilv~~Gd~V~~Gq~L~~I~~~~~ 265 (271)
.-+...+|+|+.+|.|.. +..+-||.|+.|+||++|....+
T Consensus 336 ~a~~~~~v~a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~id~~~Gi~~~~k~g~~v~~g~~l~~i~~~~~ 407 (440)
T 2tpt_A 336 TAMLTKAVYADTEGFVSEMDTRALGMAVVAMGGGRRQASDTIDYSVGFTDMARLGDQVDGQRPLAVIHAKDE 407 (440)
T ss_dssp CCSEEEEECCSSCEEEEEECHHHHHHHHHHHTTSCSSTTCCCCSSCEEESCCCTTCEEBTTBCSEEEEESSH
T ss_pred CCCeEEEEecCCCEEEEEechHHHHHHHHHcCCCcCCCCCCCCcCcCeeEeccCCCEECCCCeEEEEecCCH
Confidence 345667888888888864 45778999999999999986544
No 118
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}
Probab=35.96 E-value=15 Score=33.93 Aligned_cols=21 Identities=24% Similarity=0.229 Sum_probs=18.4
Q ss_pred CccCCCCeEecCCeEEEEEec
Q 024168 206 PSCKEKQTVREGQVLCYIEQL 226 (271)
Q Consensus 206 ~~V~~Gd~V~~Gq~l~~IEam 226 (271)
..|++||.|++||+|+.+-..
T Consensus 284 ~~v~~G~~V~~G~~Ig~~G~t 304 (361)
T 2gu1_A 284 ILVKKGQLVKRGQKIALAGAT 304 (361)
T ss_dssp ECCCTTCEECTTCEEEECCCC
T ss_pred cccCCcCEECCCCEEEEECCC
Confidence 579999999999999998643
No 119
>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}
Probab=35.80 E-value=47 Score=28.16 Aligned_cols=47 Identities=13% Similarity=0.045 Sum_probs=35.6
Q ss_pred CCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEecCCCCC
Q 024168 210 EKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILPSFPGI 267 (271)
Q Consensus 210 ~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~~~~~~ 267 (271)
-|-.+++|+-||.+++- |..+-+.+..|+.|..|+.|+.|...-..+
T Consensus 92 ~~~~lkkGt~L~lvpae-----------G~~V~~i~~~G~rV~kgd~lA~i~T~KGEV 138 (169)
T 3d4r_A 92 TLTYLKAGTKLISVPAE-----------GYKVYPIMDFGFRVLKGYRLATLESKKGDL 138 (169)
T ss_dssp EEEEECTTCBCEEEEEC-----------SSEEEECCCCSEEECTTCEEEEEECTTCCE
T ss_pred EEEEEcCCCEEEEEEeC-----------ceEEEEEcCcCcEeccCCeEEEEEecCceE
Confidence 44556788888988765 445667788999999999999998655443
No 120
>3nyy_A Putative glycyl-glycine endopeptidase LYTM; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE 2PE SO4; 1.60A {Ruminococcus gnavus}
Probab=35.05 E-value=31 Score=30.58 Aligned_cols=22 Identities=32% Similarity=0.332 Sum_probs=18.7
Q ss_pred EE-ecCCCCcccCCCeEEEEecC
Q 024168 242 KI-LRKDGDPIGYGDPLIVILPS 263 (271)
Q Consensus 242 ~I-lv~~Gd~V~~Gq~L~~I~~~ 263 (271)
++ .|+.||.|..||.|..+...
T Consensus 180 ~~~~V~~G~~V~~Gq~IG~vG~t 202 (252)
T 3nyy_A 180 SYAELEKGDPVKAGDLLGYMGDS 202 (252)
T ss_dssp EECSCCTTCEECTTCEEEECBCC
T ss_pred CCCcCCCCCEECCCCEEEEECCC
Confidence 44 79999999999999998743
No 121
>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*
Probab=35.00 E-value=23 Score=28.47 Aligned_cols=33 Identities=18% Similarity=0.182 Sum_probs=28.5
Q ss_pred eeeecCCCeEEEEEec-CCCCcccCCCeEEEEec
Q 024168 230 IPIESDIAGEVIKILR-KDGDPIGYGDPLIVILP 262 (271)
Q Consensus 230 ~~V~Ap~~G~V~~Ilv-~~Gd~V~~Gq~L~~I~~ 262 (271)
.++..+.-|.|..+.+ +.|+.|..|++|+.|+.
T Consensus 28 td~a~~~lG~i~~v~lp~~G~~V~~g~~l~~vEs 61 (131)
T 1hpc_A 28 TDHAQDHLGEVVFVELPEPGVSVTKGKGFGAVES 61 (131)
T ss_dssp CHHHHHHHCSEEEEECCCTTCEECBTSEEEEEEE
T ss_pred ehhhcccCCCceEEEecCCCCEEeCCCEEEEEEe
Confidence 4566777898999987 99999999999999984
No 122
>1yw4_A Succinylglutamate desuccinylase; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.00A {Chromobacterium violaceum} SCOP: c.56.5.7
Probab=34.78 E-value=8.7 Score=35.31 Aligned_cols=37 Identities=14% Similarity=0.017 Sum_probs=25.2
Q ss_pred CccCCCCeEecCCeEEEEEecC-----eeeeeecCCCeEEEE
Q 024168 206 PSCKEKQTVREGQVLCYIEQLG-----GEIPIESDIAGEVIK 242 (271)
Q Consensus 206 ~~V~~Gd~V~~Gq~l~~IEamK-----~~~~V~Ap~~G~V~~ 242 (271)
+.++.|+.|++||+|+.+-... ...+|.+|.+|+|.-
T Consensus 277 ~~~~~g~~V~~G~~La~i~d~~~~~g~~~~~i~aP~~Gvv~g 318 (341)
T 1yw4_A 277 DSVENFTLLPDGMLIAEDGAVRYQATGGEERILFPNPAVKPG 318 (341)
T ss_dssp TTCCBTEECCSSCCCC--------CCSSCCEEESCCTTCCSS
T ss_pred ecCCCcCEeCCCCEEEEECCCceEeCCCceEEEeCCCCceee
Confidence 4578999999999999876542 334699999997753
No 123
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=32.83 E-value=44 Score=33.53 Aligned_cols=41 Identities=27% Similarity=0.437 Sum_probs=30.5
Q ss_pred ccCCCCeEecCCeEEEEEecCee-eee--ecCCCeEEEEEecCCCC
Q 024168 207 SCKEKQTVREGQVLCYIEQLGGE-IPI--ESDIAGEVIKILRKDGD 249 (271)
Q Consensus 207 ~V~~Gd~V~~Gq~l~~IEamK~~-~~V--~Ap~~G~V~~Ilv~~Gd 249 (271)
.+++||.|..||+++.+.-.... ..| ...+.|+|+.| ..|+
T Consensus 130 ~~~~Gd~v~~g~i~g~v~e~~~i~h~im~pp~~~g~v~~i--~~g~ 173 (600)
T 3vr4_A 130 TIEEGTEVSAGDIIGYVDETKIIQHKIMVPNGIKGTVQKI--ESGS 173 (600)
T ss_dssp CSCTTCEECTTCEEEEEECSSSCEEEEECCTTCCEEEEEE--CCEE
T ss_pred ccccCCEecCCceEEEEecCCceeeeeecCCCCCceEEEe--cCCc
Confidence 48999999999999998754432 444 33468999998 5564
No 124
>2lmc_B DNA-directed RNA polymerase subunit beta; transferase, transcription; NMR {Escherichia coli k-12}
Probab=31.86 E-value=18 Score=27.12 Aligned_cols=20 Identities=25% Similarity=0.303 Sum_probs=16.5
Q ss_pred CCCCCccCCCCeEecCCeEE
Q 024168 202 KRAPPSCKEKQTVREGQVLC 221 (271)
Q Consensus 202 P~~~~~V~~Gd~V~~Gq~l~ 221 (271)
......|+.||.|++||.|.
T Consensus 63 ~~~~l~V~eGd~V~~G~~Lt 82 (84)
T 2lmc_B 63 KWRQLNVFEGERVERGDVIS 82 (84)
T ss_dssp TTSCCSSCTTEEECBSCSSB
T ss_pred CCCceEeCCCCEECCCCCcc
Confidence 46778899999999999763
No 125
>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1
Probab=30.25 E-value=34 Score=27.28 Aligned_cols=33 Identities=18% Similarity=0.309 Sum_probs=27.8
Q ss_pred eeeecCCCeEEEEEec-CCCCcccCCCeEEEEec
Q 024168 230 IPIESDIAGEVIKILR-KDGDPIGYGDPLIVILP 262 (271)
Q Consensus 230 ~~V~Ap~~G~V~~Ilv-~~Gd~V~~Gq~L~~I~~ 262 (271)
.+...+.-|.|..+.+ +.|+.|..|++|+.|+.
T Consensus 28 t~~a~~~lG~i~~v~lp~vG~~V~~g~~l~~vEs 61 (128)
T 1onl_A 28 TDYAQDALGDVVYVELPEVGRVVEKGEAVAVVES 61 (128)
T ss_dssp CHHHHHHHCSEEEEECBCTTCEECTTCEEEEEEE
T ss_pred ehHHhhcCCCceEEEecCCCCEEeCCCEEEEEEE
Confidence 4556677788888876 99999999999999984
No 126
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}
Probab=29.58 E-value=42 Score=30.88 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=18.2
Q ss_pred EEecCCCCcccCCCeEEEEec
Q 024168 242 KILRKDGDPIGYGDPLIVILP 262 (271)
Q Consensus 242 ~Ilv~~Gd~V~~Gq~L~~I~~ 262 (271)
++.|+.|+.|..||.|..+..
T Consensus 283 ~~~v~~G~~V~~G~~Ig~~G~ 303 (361)
T 2gu1_A 283 KILVKKGQLVKRGQKIALAGA 303 (361)
T ss_dssp EECCCTTCEECTTCEEEECCC
T ss_pred ccccCCcCEECCCCEEEEECC
Confidence 467999999999999998864
No 127
>2hsi_A Putative peptidase M23; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.90A {Pseudomonas aeruginosa PAO1}
Probab=29.39 E-value=33 Score=30.94 Aligned_cols=62 Identities=18% Similarity=0.207 Sum_probs=40.0
Q ss_pred eEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168 183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILP 262 (271)
Q Consensus 183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~ 262 (271)
..|.|+..|++.... +.-.-|..| +|+-.....-+.+.. .++.|+.||.|..||.|..+..
T Consensus 191 tpV~A~~~G~V~~~g--------------~~~~~G~~V-iI~Hg~G~~t~Y~HL----~~i~V~~G~~V~~Gq~IG~vG~ 251 (282)
T 2hsi_A 191 TPIKAPAAGKVILIG--------------DYFFNGKTV-FVDHGQGFISMFCHL----SKIDVKLGQQVPRGGVLGKVGA 251 (282)
T ss_dssp CEEECSSCEEEEEEE--------------EETTTEEEE-EEEEETTEEEEEEEE----SEECSCTTCEECTTCEEEECCC
T ss_pred CeEEeccCeEEEEEE--------------EcCCCCCEE-EEEeCCcEEEEEECC----CccccCCcCEECCCCEEEEECC
Confidence 468899999886542 110123333 455444444555543 3678999999999999998864
Q ss_pred C
Q 024168 263 S 263 (271)
Q Consensus 263 ~ 263 (271)
.
T Consensus 252 t 252 (282)
T 2hsi_A 252 T 252 (282)
T ss_dssp T
T ss_pred C
Confidence 3
No 128
>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*
Probab=29.39 E-value=36 Score=27.13 Aligned_cols=33 Identities=15% Similarity=0.237 Sum_probs=27.6
Q ss_pred eeeecCCCeEEEEEec-CCCCcccCCCeEEEEec
Q 024168 230 IPIESDIAGEVIKILR-KDGDPIGYGDPLIVILP 262 (271)
Q Consensus 230 ~~V~Ap~~G~V~~Ilv-~~Gd~V~~Gq~L~~I~~ 262 (271)
.+...+.-|.|..+.+ +.|+.|..|++|+.|+.
T Consensus 29 td~a~~~lG~i~~v~lp~vG~~V~~g~~l~~vEs 62 (128)
T 3a7l_A 29 TEHAQELLGDMVFVDLPEVGATVSAGDDCAVAES 62 (128)
T ss_dssp CHHHHHHHCSEEEEECCCTTCEECTTCEEEEEEE
T ss_pred ehHHhccCCceEEEEecCCCCEEeCCCEEEEEEe
Confidence 4456677788888876 99999999999999984
No 129
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=28.93 E-value=48 Score=31.75 Aligned_cols=24 Identities=17% Similarity=0.108 Sum_probs=20.5
Q ss_pred CCCccCCCCeEecCCeEEEEEecC
Q 024168 204 APPSCKEKQTVREGQVLCYIEQLG 227 (271)
Q Consensus 204 ~~~~V~~Gd~V~~Gq~l~~IEamK 227 (271)
...++++||.|++||+|+.|-+..
T Consensus 370 i~~~~k~g~~v~~g~~l~~i~~~~ 393 (423)
T 2dsj_A 370 VYLLKKPGDRVERGEALALVYHRR 393 (423)
T ss_dssp EEESCCTTCEECTTSEEEEEEECS
T ss_pred eeeeccCCCEeCCCCeEEEEEeCC
Confidence 346789999999999999998764
No 130
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=28.83 E-value=47 Score=31.80 Aligned_cols=24 Identities=21% Similarity=0.140 Sum_probs=20.5
Q ss_pred CCCccCCCCeEecCCeEEEEEecC
Q 024168 204 APPSCKEKQTVREGQVLCYIEQLG 227 (271)
Q Consensus 204 ~~~~V~~Gd~V~~Gq~l~~IEamK 227 (271)
...++++||.|++||+|+.|-+..
T Consensus 378 i~~~~k~g~~v~~g~~l~~i~~~~ 401 (433)
T 1brw_A 378 IVLHKKIGDRVQKGEALATIHSNR 401 (433)
T ss_dssp EEESCCTTCEECTTCEEEEEEESS
T ss_pred eeEeccCCCEECCCCeEEEEEcCC
Confidence 346789999999999999998764
No 131
>3tr3_A BOLA; cellular processes, stress-induced, unknown function; 2.46A {Coxiella burnetii}
Probab=28.54 E-value=88 Score=23.07 Aligned_cols=34 Identities=15% Similarity=0.173 Sum_probs=22.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCCccEEEEEe-CC--EEEEEE
Q 024168 83 QLIPDSSEVESLVTDICNTTSVAEFELKL-DG--FRLYVT 119 (271)
Q Consensus 83 ~~~md~~eI~~Li~~l~~~S~l~eLelk~-~~--~~L~L~ 119 (271)
+.||+.++|+++|++-+ ...+|++.. +| |++.|.
T Consensus 2 ~~Mm~~~~I~~~L~~~l---~~~~l~V~~g~gshf~v~IV 38 (82)
T 3tr3_A 2 NAMVTTHDIKQWIETGL---SESRVISAEGDGHHFEAVVL 38 (82)
T ss_dssp --CCCHHHHHHHHHHHS---TTCEEEEEEECSSEEEEEEE
T ss_pred CccchHHHHHHHHHhhC---CCcEEEEEcCCCCeEEEEEE
Confidence 46899999999997443 457888884 44 555544
No 132
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=27.32 E-value=78 Score=31.61 Aligned_cols=37 Identities=30% Similarity=0.415 Sum_probs=28.1
Q ss_pred ccCCCCeEecCCeEEEEEecCeeeee--ecCCCeEEEEE
Q 024168 207 SCKEKQTVREGQVLCYIEQLGGEIPI--ESDIAGEVIKI 243 (271)
Q Consensus 207 ~V~~Gd~V~~Gq~l~~IEamK~~~~V--~Ap~~G~V~~I 243 (271)
.+++||.|..|++++.+.--.....| ...+.|+|++|
T Consensus 122 ~~~~g~~v~~G~i~g~v~e~~~ih~i~~pp~~~g~v~~i 160 (578)
T 3gqb_A 122 MVKPGDEVRGGMVLGTVPEFGFTHKILVPPDVRGRVKEV 160 (578)
T ss_dssp CCCTTCEECTTCEEEEEEETTEEEEEECCTTCCEEEEEE
T ss_pred ccccCccccccceeeeecccccceecccCCCcCceeEEe
Confidence 58999999999999998654433433 33478999887
No 133
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=27.01 E-value=44 Score=32.14 Aligned_cols=21 Identities=29% Similarity=0.213 Sum_probs=18.5
Q ss_pred CCCccCCCCeEecCCeEEEEE
Q 024168 204 APPSCKEKQTVREGQVLCYIE 224 (271)
Q Consensus 204 ~~~~V~~Gd~V~~Gq~l~~IE 224 (271)
...++++||.|++||+|+.|-
T Consensus 381 i~l~~~~G~~V~~g~~l~~i~ 401 (436)
T 3h5q_A 381 IVLNKKIGDKVEEGESLLTIH 401 (436)
T ss_dssp EEESCCTTCEECTTSEEEEEE
T ss_pred eEEecCCcCEeCCCCeEEEEe
Confidence 346789999999999999987
No 134
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=26.91 E-value=31 Score=31.26 Aligned_cols=21 Identities=14% Similarity=0.105 Sum_probs=18.9
Q ss_pred CCccCCCCeEecCCeEEEEEe
Q 024168 205 PPSCKEKQTVREGQVLCYIEQ 225 (271)
Q Consensus 205 ~~~V~~Gd~V~~Gq~l~~IEa 225 (271)
.|+++.|+.|++||+|+.|+-
T Consensus 74 ~~~~~dG~~v~~g~~v~~i~G 94 (285)
T 1o4u_A 74 KFNVEDGEYLEGTGVIGEIEG 94 (285)
T ss_dssp EESCCTTCEEESCEEEEEEEE
T ss_pred EEEcCCCCCcCCCCEEEEEEE
Confidence 478999999999999999983
No 135
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=26.35 E-value=34 Score=30.93 Aligned_cols=21 Identities=24% Similarity=0.341 Sum_probs=18.8
Q ss_pred CCccCCCCeEecCCeEEEEEe
Q 024168 205 PPSCKEKQTVREGQVLCYIEQ 225 (271)
Q Consensus 205 ~~~V~~Gd~V~~Gq~l~~IEa 225 (271)
.|+++.|+.|++||+|+.|+-
T Consensus 75 ~~~~~dG~~v~~g~~v~~i~G 95 (286)
T 1x1o_A 75 TPLVAEGARVAEGTEVARVRG 95 (286)
T ss_dssp EESSCTTCEECTTCEEEEEEE
T ss_pred EEEcCCCCCccCCCEEEEEEE
Confidence 478999999999999999983
No 136
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=26.23 E-value=57 Score=31.68 Aligned_cols=24 Identities=21% Similarity=0.180 Sum_probs=20.8
Q ss_pred CCCccCCCCeEecCCeEEEEEecC
Q 024168 204 APPSCKEKQTVREGQVLCYIEQLG 227 (271)
Q Consensus 204 ~~~~V~~Gd~V~~Gq~l~~IEamK 227 (271)
...++++||.|++||+|+.|-+..
T Consensus 413 i~l~~k~G~~V~~g~~l~~i~~~~ 436 (474)
T 1uou_A 413 AELLVDVGQRLRRGTPWLRVHRDG 436 (474)
T ss_dssp EEECSCTTCEECTTCEEEEEEESS
T ss_pred eEEEccCCCEECCCCeEEEEEcCC
Confidence 446789999999999999998764
No 137
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=25.16 E-value=34 Score=30.90 Aligned_cols=20 Identities=20% Similarity=0.288 Sum_probs=18.4
Q ss_pred CCccCCCCeEecCCeEEEEE
Q 024168 205 PPSCKEKQTVREGQVLCYIE 224 (271)
Q Consensus 205 ~~~V~~Gd~V~~Gq~l~~IE 224 (271)
.|+++.|+.|++||+|+.|+
T Consensus 74 ~~~~~dG~~v~~g~~v~~i~ 93 (284)
T 1qpo_A 74 LDRVEDGARVPPGEALMTLE 93 (284)
T ss_dssp EEECCTTCEECTTCEEEEEE
T ss_pred EEEcCCCCEecCCcEEEEEE
Confidence 46899999999999999998
No 138
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=24.37 E-value=39 Score=30.77 Aligned_cols=21 Identities=10% Similarity=0.017 Sum_probs=19.1
Q ss_pred CCCccCCCCeEecCCeEEEEE
Q 024168 204 APPSCKEKQTVREGQVLCYIE 224 (271)
Q Consensus 204 ~~~~V~~Gd~V~~Gq~l~~IE 224 (271)
..|+++.|+.|++||+|+.++
T Consensus 77 v~~~~~dG~~v~~g~~v~~i~ 97 (287)
T 3tqv_A 77 ITWLYSDAQKVPANARIFELK 97 (287)
T ss_dssp EEESSCTTCEECTTCEEEEEE
T ss_pred EEEEeCCCCEeeCCCEEEEEE
Confidence 357899999999999999998
No 139
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=24.27 E-value=18 Score=27.48 Aligned_cols=13 Identities=31% Similarity=0.698 Sum_probs=12.1
Q ss_pred eeccccccccccc
Q 024168 12 KIPKGNLGRARVG 24 (271)
Q Consensus 12 ~~~~~~~~~~~~~ 24 (271)
+++.+|||.+|+|
T Consensus 2 riLglD~G~kriG 14 (98)
T 1iv0_A 2 RVGALDVGEARIG 14 (98)
T ss_dssp CEEEEEESSSEEE
T ss_pred cEEEEEeCCCEEE
Confidence 6899999999999
No 140
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=23.84 E-value=48 Score=31.85 Aligned_cols=24 Identities=13% Similarity=0.037 Sum_probs=20.6
Q ss_pred CCCccCCCCeEecCCeEEEEEecC
Q 024168 204 APPSCKEKQTVREGQVLCYIEQLG 227 (271)
Q Consensus 204 ~~~~V~~Gd~V~~Gq~l~~IEamK 227 (271)
...++++||.|++||+|+.|-+..
T Consensus 383 i~~~~k~g~~v~~g~~l~~i~~~~ 406 (440)
T 2tpt_A 383 FTDMARLGDQVDGQRPLAVIHAKD 406 (440)
T ss_dssp EESCCCTTCEEBTTBCSEEEEESS
T ss_pred eeEeccCCCEECCCCeEEEEecCC
Confidence 346789999999999999998764
No 141
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=23.38 E-value=41 Score=30.87 Aligned_cols=20 Identities=15% Similarity=0.019 Sum_probs=18.6
Q ss_pred CCccCCCCeEecCCeEEEEE
Q 024168 205 PPSCKEKQTVREGQVLCYIE 224 (271)
Q Consensus 205 ~~~V~~Gd~V~~Gq~l~~IE 224 (271)
.|+++.|+.|++||+|+.|+
T Consensus 87 ~~~~~dG~~v~~g~~v~~i~ 106 (300)
T 3l0g_A 87 EIHKKDGDITGKNSTLVSGE 106 (300)
T ss_dssp EECCCTTCEECSSCEEEEEE
T ss_pred EEEeCCCCEeeCCCEEEEEE
Confidence 47899999999999999998
No 142
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=22.46 E-value=95 Score=31.09 Aligned_cols=37 Identities=22% Similarity=0.316 Sum_probs=27.2
Q ss_pred ccCCCCeEecCCeEEEEEecCe-eeee--ecCCCeEEEEE
Q 024168 207 SCKEKQTVREGQVLCYIEQLGG-EIPI--ESDIAGEVIKI 243 (271)
Q Consensus 207 ~V~~Gd~V~~Gq~l~~IEamK~-~~~V--~Ap~~G~V~~I 243 (271)
.+++||.|..|++++.+.-... ...| ...+.|+|+.|
T Consensus 123 ~~~~gd~v~~G~i~g~v~e~~~~~~~imvpp~~~g~v~~i 162 (588)
T 3mfy_A 123 KAKVGDKVVGGDIIGEVPETSIIVHKIMVPPGIEGEIVEI 162 (588)
T ss_dssp CCCTTCEECTTCEEEEEECSSSCEEEEECCTTCCEEEEEE
T ss_pred ccccCcccccCceEEEEecccceeeeeecCCCCCceEEEe
Confidence 5899999999999998864432 2333 33468888887
No 143
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=21.82 E-value=41 Score=31.12 Aligned_cols=21 Identities=19% Similarity=0.324 Sum_probs=19.1
Q ss_pred CCccCCCCeEecCCeEEEEEe
Q 024168 205 PPSCKEKQTVREGQVLCYIEQ 225 (271)
Q Consensus 205 ~~~V~~Gd~V~~Gq~l~~IEa 225 (271)
.|++++|+.|.+|++|+.|+.
T Consensus 111 ~~~~~dG~~v~~g~~l~~v~G 131 (320)
T 3paj_A 111 EWHVQDGDTLTPNQTLCTLTG 131 (320)
T ss_dssp EESSCTTCEECTTCEEEEEEE
T ss_pred EEEeCCCCEecCCCEEEEEEe
Confidence 578999999999999999983
No 144
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=21.70 E-value=41 Score=30.74 Aligned_cols=21 Identities=10% Similarity=0.211 Sum_probs=19.2
Q ss_pred CCccCCCCeEecCCeEEEEEe
Q 024168 205 PPSCKEKQTVREGQVLCYIEQ 225 (271)
Q Consensus 205 ~~~V~~Gd~V~~Gq~l~~IEa 225 (271)
.|++++|+.|.+||+|+.|+.
T Consensus 89 ~~~~~dG~~v~~g~~l~~v~G 109 (298)
T 3gnn_A 89 DWRHREGDRMSADSTVCELRG 109 (298)
T ss_dssp EESSCTTCEECTTCEEEEEEE
T ss_pred EEEcCCCCEecCCCEEEEEEe
Confidence 578999999999999999983
No 145
>3it5_A Protease LASA; metallopeptidase, beta-protein, cell membrane, cell out membrane, hydrolase, membrane, metal-binding; 2.00A {Pseudomonas aeruginosa} PDB: 3it7_A*
Probab=21.42 E-value=75 Score=26.59 Aligned_cols=56 Identities=13% Similarity=0.033 Sum_probs=39.2
Q ss_pred eEEeCCcCeEEEecccccCCCCCCccCCCCeEecCCeEEEEEecCeeeeeecCCCeEEEEEecCCCCcccCCCeEEEEec
Q 024168 183 VILESPKVGYFRRSRTIKGKRAPPSCKEKQTVREGQVLCYIEQLGGEIPIESDIAGEVIKILRKDGDPIGYGDPLIVILP 262 (271)
Q Consensus 183 ~~V~sP~vG~f~~~~s~~~P~~~~~V~~Gd~V~~Gq~l~~IEamK~~~~V~Ap~~G~V~~Ilv~~Gd~V~~Gq~L~~I~~ 262 (271)
..|.|+..|++... | |. ..+|+...-..-+.+.. .++.|+.||.|..||.|..+..
T Consensus 49 tpV~A~~~G~V~~~--------------~-----G~-~V~I~H~~g~~t~Y~HL----~~i~V~~G~~V~~Gq~IG~vG~ 104 (182)
T 3it5_A 49 YSVVAAHAGTVRVL--------------S-----RC-QVRVTHPSGWATNYYHM----DQIQVSNGQQVSADTKLGVYAG 104 (182)
T ss_dssp CEEECSSSEEEEEE--------------E-----TT-EEEEECTTSEEEEEESE----ESCCCCTTCEECTTCEEEEECS
T ss_pred CEEEeccCEEEEEE--------------C-----Ce-EEEEEECCcEEEEEEcC----CccccCCCCEEcCCCEEEeecC
Confidence 56888899988642 1 33 33455555445555553 3678999999999999999865
No 146
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=20.91 E-value=44 Score=30.29 Aligned_cols=22 Identities=5% Similarity=0.092 Sum_probs=19.4
Q ss_pred CCCccCCCCeEecCCeEEEEEe
Q 024168 204 APPSCKEKQTVREGQVLCYIEQ 225 (271)
Q Consensus 204 ~~~~V~~Gd~V~~Gq~l~~IEa 225 (271)
..|++++|+.|.+|++|+.|+.
T Consensus 87 v~~~~~dG~~v~~g~~~~~v~G 108 (296)
T 1qap_A 87 LTWHVDDGDAIHANQTVFELQG 108 (296)
T ss_dssp EEESCCTTCEECTTCEEEEEEE
T ss_pred EEEEcCCCCEecCCCEEEEEEE
Confidence 3578999999999999999984
No 147
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=20.75 E-value=78 Score=28.45 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=20.8
Q ss_pred eEEEEEecCCCCcccCCCeEEEEec
Q 024168 238 GEVIKILRKDGDPIGYGDPLIVILP 262 (271)
Q Consensus 238 G~V~~Ilv~~Gd~V~~Gq~L~~I~~ 262 (271)
+.-.+++++||+.|..|++|++++-
T Consensus 70 ~~~v~~~~~dG~~v~~g~~v~~i~G 94 (284)
T 1qpo_A 70 GYRVLDRVEDGARVPPGEALMTLEA 94 (284)
T ss_dssp SEEEEEECCTTCEECTTCEEEEEEE
T ss_pred CEEEEEEcCCCCEecCCcEEEEEEE
Confidence 4445678999999999999999873
No 148
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=20.23 E-value=49 Score=29.41 Aligned_cols=20 Identities=20% Similarity=0.282 Sum_probs=17.9
Q ss_pred CccCCCCeEecCCeEEEEEe
Q 024168 206 PSCKEKQTVREGQVLCYIEQ 225 (271)
Q Consensus 206 ~~V~~Gd~V~~Gq~l~~IEa 225 (271)
|.+++|+.|.+|++|+.|+.
T Consensus 62 ~~~~eG~~v~~g~~~~~v~G 81 (273)
T 2b7n_A 62 QTIKDKERFKPKDALMEIRG 81 (273)
T ss_dssp EECCTTCEECTTCEEEEEEE
T ss_pred EEcCCCCCcCCCCEEEEEEe
Confidence 56899999999999999984
Done!