Query 024169
Match_columns 271
No_of_seqs 186 out of 1372
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 03:34:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024169.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024169hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l9b_A MRNA 3'-END-processing 49.4 25 0.00086 27.7 4.9 32 235-266 37-68 (109)
2 3ech_A MEXR, multidrug resista 44.0 29 0.00098 26.3 4.6 31 236-266 112-142 (142)
3 2g9w_A Conserved hypothetical 35.5 32 0.0011 26.6 3.7 30 236-265 96-125 (138)
4 3b9w_A Ammonium transporter fa 33.5 24 0.00081 33.7 3.0 42 164-205 259-301 (407)
5 4aik_A Transcriptional regulat 31.9 46 0.0016 26.1 4.1 29 237-265 108-136 (151)
6 3hd6_A Ammonium transporter RH 31.9 22 0.00074 34.8 2.4 46 164-209 308-356 (490)
7 3lvu_A ABC transporter, peripl 30.9 52 0.0018 27.7 4.5 36 232-267 216-251 (258)
8 2l2l_A Transcriptional repress 30.1 43 0.0015 22.0 2.8 19 248-266 2-20 (43)
9 3eco_A MEPR; mutlidrug efflux 29.0 72 0.0024 23.8 4.6 30 236-265 108-137 (139)
10 3bro_A Transcriptional regulat 28.1 58 0.002 24.2 3.9 29 237-265 112-140 (141)
11 3pam_A Transmembrane protein; 28.1 58 0.002 27.3 4.3 36 232-267 215-250 (259)
12 3fm5_A Transcriptional regulat 27.3 61 0.0021 24.6 4.0 31 236-266 115-145 (150)
13 3o6p_A Peptide ABC transporter 27.1 61 0.0021 26.6 4.2 36 232-267 183-220 (229)
14 2b2h_A AMT-1, ammonium transpo 27.1 23 0.00078 33.7 1.6 37 164-204 269-305 (399)
15 2zo4_A Metallo-beta-lactamase 27.1 97 0.0033 26.6 5.7 70 179-251 210-284 (317)
16 3bpj_A Eukaryotic translation 26.7 88 0.003 22.8 4.5 31 236-266 40-70 (80)
17 3e6m_A MARR family transcripti 26.3 83 0.0028 24.3 4.7 30 236-265 128-157 (161)
18 3oop_A LIN2960 protein; protei 26.2 71 0.0024 24.0 4.1 30 236-265 112-141 (143)
19 2qww_A Transcriptional regulat 26.1 84 0.0029 23.8 4.6 30 236-265 120-149 (154)
20 3s2w_A Transcriptional regulat 25.9 86 0.0029 24.1 4.7 30 236-265 125-154 (159)
21 3jw4_A Transcriptional regulat 25.2 60 0.002 24.6 3.6 30 236-265 118-147 (148)
22 2fbh_A Transcriptional regulat 25.2 77 0.0026 23.6 4.1 29 237-265 114-142 (146)
23 2eth_A Transcriptional regulat 25.1 91 0.0031 23.8 4.7 29 237-265 120-148 (154)
24 1fqj_C Retinal ROD rhodopsin-s 24.6 26 0.0009 22.8 1.1 18 193-210 1-18 (42)
25 3bpv_A Transcriptional regulat 24.2 81 0.0028 23.3 4.1 29 237-265 105-133 (138)
26 3bja_A Transcriptional regulat 24.1 94 0.0032 22.9 4.4 29 237-265 109-137 (139)
27 1dd4_C 50S ribosomal protein L 23.9 87 0.003 20.1 3.5 28 235-263 2-29 (40)
28 3mg1_A OCP, orange carotenoid 23.8 60 0.002 30.1 3.7 26 236-262 64-89 (323)
29 3deu_A Transcriptional regulat 23.0 1E+02 0.0035 24.2 4.7 30 236-265 129-158 (166)
30 3tgn_A ADC operon repressor AD 22.9 1.1E+02 0.0037 22.9 4.6 29 237-265 116-144 (146)
31 1sd4_A Penicillinase repressor 22.9 99 0.0034 22.8 4.3 28 235-262 94-123 (126)
32 1s3j_A YUSO protein; structura 21.8 1.1E+02 0.0039 23.0 4.6 29 237-265 113-141 (155)
33 3boq_A Transcriptional regulat 21.7 95 0.0033 23.7 4.1 29 237-265 124-152 (160)
34 3bdd_A Regulatory protein MARR 21.6 1.2E+02 0.0041 22.3 4.6 31 235-265 106-136 (142)
35 3cjn_A Transcriptional regulat 21.5 96 0.0033 23.8 4.1 29 237-265 128-156 (162)
36 2nyx_A Probable transcriptiona 21.0 1.2E+02 0.0042 23.6 4.8 29 237-265 121-149 (168)
37 4gl8_A Oligopeptide ABC transp 20.9 85 0.0029 29.4 4.3 35 232-266 454-488 (529)
38 1r8j_A KAIA; circadian clock p 20.6 62 0.0021 29.5 3.1 22 243-264 183-204 (289)
39 2rdp_A Putative transcriptiona 20.5 1.2E+02 0.004 22.8 4.4 29 237-265 118-146 (150)
40 2a61_A Transcriptional regulat 20.3 1E+02 0.0035 22.9 3.9 29 237-265 109-137 (145)
41 2fa5_A Transcriptional regulat 20.2 1.2E+02 0.0043 23.0 4.5 30 236-265 124-153 (162)
No 1
>2l9b_A MRNA 3'-END-processing protein RNA15; 3' END mRNA maturation, transcription; NMR {Saccharomyces cerevisiae}
Probab=49.41 E-value=25 Score=27.70 Aligned_cols=32 Identities=19% Similarity=0.159 Sum_probs=27.0
Q ss_pred CHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc
Q 024169 235 RVEMILEQILTALTYEEQKALYMKLGEILQER 266 (271)
Q Consensus 235 ~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~~ 266 (271)
+.+..+++....|++++..++++++|++..+.
T Consensus 37 ap~~~IS~~Laslpp~Ql~eiL~qmK~~~~~n 68 (109)
T 2l9b_A 37 TPAMMISSELAKKPKEVQLKFLQKFQEWTRAH 68 (109)
T ss_dssp CHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC
Confidence 46647777788999999999999999998764
No 2
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=44.04 E-value=29 Score=26.33 Aligned_cols=31 Identities=23% Similarity=0.312 Sum_probs=25.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc
Q 024169 236 VEMILEQILTALTYEEQKALYMKLGEILQER 266 (271)
Q Consensus 236 ~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~~ 266 (271)
.+...+.+...++++|+..+.+.|+++..|+
T Consensus 112 ~~~~~~~~~~~l~~~e~~~l~~~l~~l~~~~ 142 (142)
T 3ech_A 112 MSRVHDELFAPLTPVEQATLVHLLDQCLAAQ 142 (142)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC
Confidence 4455666677899999999999999998875
No 3
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=35.47 E-value=32 Score=26.64 Aligned_cols=30 Identities=20% Similarity=0.205 Sum_probs=24.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q 024169 236 VEMILEQILTALTYEEQKALYMKLGEILQE 265 (271)
Q Consensus 236 ~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~ 265 (271)
...+.+.+...||+||+.+|.+.|+++..+
T Consensus 96 ~~~~~~~~~~~ls~eE~~~L~~lL~~~~~~ 125 (138)
T 2g9w_A 96 RQAALVHFVERVGADEADALRRALAELEAG 125 (138)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhhhc
Confidence 456666677789999999999999988665
No 4
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=33.48 E-value=24 Score=33.67 Aligned_cols=42 Identities=24% Similarity=0.245 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHhhhhhh-HHHHHHhhcCCCCCCCCCCCCCc
Q 024169 164 QWHALCLGLFASIIAPFGG-FFASGFKRAFKIKDFGDSIPGHG 205 (271)
Q Consensus 164 ~~~~l~l~~~~sl~a~~GD-L~~S~iKR~~gIKD~G~~iPGHG 205 (271)
+|.++++|++++++..+|- ++...+||+++|-|.=+.+|-||
T Consensus 259 p~~A~iIG~iaG~i~~~~~~~l~~~l~~~l~iDD~l~a~~vHg 301 (407)
T 3b9w_A 259 PVGAFVIGLLGGAISVVGFVFIQPMLESKAKTIDTCGVHNLHG 301 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHSCCCCTTCHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCeecch
Confidence 3778999999999998886 45567889999999999999994
No 5
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=31.92 E-value=46 Score=26.08 Aligned_cols=29 Identities=14% Similarity=0.184 Sum_probs=23.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q 024169 237 EMILEQILTALTYEEQKALYMKLGEILQE 265 (271)
Q Consensus 237 ~~~~~~~~~~l~~~~~~~l~~~l~~~~~~ 265 (271)
..+.+.+...||+||+..+.+.|+++..|
T Consensus 108 ~~~~~~~~~~l~~ee~~~l~~~L~kl~~n 136 (151)
T 4aik_A 108 SSTRKEILGGISSDEIAVLSGLIDKLEKN 136 (151)
T ss_dssp HHHHHHHTTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 44556667789999999999999888665
No 6
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens}
Probab=31.91 E-value=22 Score=34.82 Aligned_cols=46 Identities=24% Similarity=0.374 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHhhhhhh-HHHHHHhhcCCCCCCCCCCCCC--cchhh
Q 024169 164 QWHALCLGLFASIIAPFGG-FFASGFKRAFKIKDFGDSIPGH--GGITD 209 (271)
Q Consensus 164 ~~~~l~l~~~~sl~a~~GD-L~~S~iKR~~gIKD~G~~iPGH--GGiLD 209 (271)
+|.++++|+++++++.+|- ++...+|++++|-|.=+.++-| ||++-
T Consensus 308 P~~AliIG~iaG~i~~~~~~~l~~~l~~kl~iDD~lgv~~vHGv~Gi~G 356 (490)
T 3hd6_A 308 PYGALIIGFVCGIISTLGFVYLTPFLESRLHIQDTCGINNLHGIPGIIG 356 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCTTCHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHCCCCccccchHHhhHHHHHH
Confidence 3788999999999999884 4456789999999988888888 45543
No 7
>3lvu_A ABC transporter, periplasmic substrate-binding PR; MCSG, PSI-2, periplasmic substrate-binding silicibacter pomeroyi, structural genomics; HET: MSE PG5; 1.79A {Silicibacter pomeroyi}
Probab=30.91 E-value=52 Score=27.67 Aligned_cols=36 Identities=22% Similarity=0.285 Sum_probs=31.1
Q ss_pred CCCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcc
Q 024169 232 QSFRVEMILEQILTALTYEEQKALYMKLGEILQERL 267 (271)
Q Consensus 232 ~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~~~ 267 (271)
+...++.+++++.+..++++|.++++++.+.+.++.
T Consensus 216 ~n~~~d~ll~~a~~~~d~~~r~~~~~~~~~~l~e~~ 251 (258)
T 3lvu_A 216 ASPAIDAMIDRMLAATTEDELTAATRALDRVLTAGR 251 (258)
T ss_dssp CCHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCC
Confidence 445688999999888999999999999999988764
No 8
>2l2l_A Transcriptional repressor P66-alpha; DNA methylation, coiled-coil, NURD, MBD2, P66alpha, transfer; NMR {Homo sapiens}
Probab=30.09 E-value=43 Score=21.98 Aligned_cols=19 Identities=26% Similarity=0.296 Sum_probs=13.1
Q ss_pred CHHHHHHHHHHHHHHHHhc
Q 024169 248 TYEEQKALYMKLGEILQER 266 (271)
Q Consensus 248 ~~~~~~~l~~~l~~~~~~~ 266 (271)
|++||.++++.|++-+.++
T Consensus 2 s~~ere~~i~~LreeLR~E 20 (43)
T 2l2l_A 2 SPEERERMIKQLKEELRLE 20 (43)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 5677777777777766554
No 9
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=29.01 E-value=72 Score=23.76 Aligned_cols=30 Identities=17% Similarity=0.352 Sum_probs=24.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q 024169 236 VEMILEQILTALTYEEQKALYMKLGEILQE 265 (271)
Q Consensus 236 ~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~ 265 (271)
.+...+.+...++++|+..+.+.|+++..+
T Consensus 108 ~~~~~~~~~~~l~~~e~~~l~~~l~~l~~~ 137 (139)
T 3eco_A 108 FDEMEQTLVSQLSEEENEQMKANLTKMLSS 137 (139)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Confidence 445566677789999999999999988764
No 10
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=28.15 E-value=58 Score=24.23 Aligned_cols=29 Identities=21% Similarity=0.168 Sum_probs=23.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q 024169 237 EMILEQILTALTYEEQKALYMKLGEILQE 265 (271)
Q Consensus 237 ~~~~~~~~~~l~~~~~~~l~~~l~~~~~~ 265 (271)
+.+.+.+...++++|+..+.+.|+++..|
T Consensus 112 ~~~~~~~~~~l~~~e~~~l~~~l~~l~~n 140 (141)
T 3bro_A 112 DSDQSQMTSGLNKEEVVFLEKILKRMIES 140 (141)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 45555666789999999999999998765
No 11
>3pam_A Transmembrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.31A {Bartonella henselae}
Probab=28.07 E-value=58 Score=27.33 Aligned_cols=36 Identities=19% Similarity=0.155 Sum_probs=30.7
Q ss_pred CCCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcc
Q 024169 232 QSFRVEMILEQILTALTYEEQKALYMKLGEILQERL 267 (271)
Q Consensus 232 ~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~~~ 267 (271)
+...++.+++++.+..++++|.++++++.+.+.++.
T Consensus 215 ~n~~~d~ll~~a~~~~d~~~r~~~~~~~~~~l~~~~ 250 (259)
T 3pam_A 215 SDPAIDAMITAILDAHSQVDFIAAVRALDRILISGS 250 (259)
T ss_dssp CCHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcC
Confidence 345688999999888999999999999999987764
No 12
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=27.31 E-value=61 Score=24.64 Aligned_cols=31 Identities=10% Similarity=0.036 Sum_probs=25.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc
Q 024169 236 VEMILEQILTALTYEEQKALYMKLGEILQER 266 (271)
Q Consensus 236 ~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~~ 266 (271)
.....+.+...++++|+..+.+.|++++.+.
T Consensus 115 ~~~~~~~~~~~l~~~e~~~l~~~L~~l~~~~ 145 (150)
T 3fm5_A 115 VDAAHGRYFEGIPDTVVNQMRDTLQSIAFPT 145 (150)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Confidence 4555666778899999999999999998763
No 13
>3o6p_A Peptide ABC transporter, peptide-binding protein; structural genomics, PSI-2, protein structure initiative; 1.65A {Enterococcus faecalis}
Probab=27.12 E-value=61 Score=26.64 Aligned_cols=36 Identities=6% Similarity=0.053 Sum_probs=30.5
Q ss_pred CCCCHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHhcc
Q 024169 232 QSFRVEMILEQILTA--LTYEEQKALYMKLGEILQERL 267 (271)
Q Consensus 232 ~~~~~~~~~~~~~~~--l~~~~~~~l~~~l~~~~~~~~ 267 (271)
+...++.+++++.+. .++++|.++++++.+.+.++.
T Consensus 183 ~n~~~d~l~~~~~~~~~~d~~~r~~~~~~~~~~l~~~~ 220 (229)
T 3o6p_A 183 NNAEFDKFVKAASSADATDPEKRWDDMLNAEKTIMGDM 220 (229)
T ss_dssp CCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHHhCC
Confidence 345688999998877 899999999999999988764
No 14
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=27.08 E-value=23 Score=33.67 Aligned_cols=37 Identities=27% Similarity=0.284 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHhhcCCCCCCCCCCCCC
Q 024169 164 QWHALCLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGH 204 (271)
Q Consensus 164 ~~~~l~l~~~~sl~a~~GDL~~S~iKR~~gIKD~G~~iPGH 204 (271)
+|.+++++++++++..++- .+|+++++-|.=+.+|-|
T Consensus 269 p~~A~iiG~iag~i~~~~~----~l~~kl~iDD~l~a~~vH 305 (399)
T 2b2h_A 269 VKGAIVIGLVAGIVCYLAM----DFRIKKKIDESLDAWAIH 305 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHTTCCCTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHcCCCCCCCceecc
Confidence 3778899999999998875 689999999987777777
No 15
>2zo4_A Metallo-beta-lactamase family protein; hydrolase; 2.10A {Thermus thermophilus}
Probab=27.06 E-value=97 Score=26.59 Aligned_cols=70 Identities=11% Similarity=0.025 Sum_probs=34.1
Q ss_pred hhhhHHHHHHhhcCCCCCCCCCCCCCcchhhh----hhhhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHh-cCCHHH
Q 024169 179 PFGGFFASGFKRAFKIKDFGDSIPGHGGITDR----MDCQMVMAVFAYIYHQSFIVPQSFRVEMILEQILT-ALTYEE 251 (271)
Q Consensus 179 ~~GDL~~S~iKR~~gIKD~G~~iPGHGGiLDR----~Dsllf~~~~~y~~~~~fi~~~~~~~~~~~~~~~~-~l~~~~ 251 (271)
...+..+|. +|-.+. |.-.++||||+..+. ++..+----=..-...-.+ .+..|.+++.+.+.. .+++.+
T Consensus 210 ~~~~~~~sl-~~l~~l-~~~~v~pgHg~~~~~~~~~i~~~~~~~~~~~~~i~~~l-~~~~t~~ei~~~~~~~~~~~~~ 284 (317)
T 2zo4_A 210 PLKDFLRSL-DRLADL-GARVAYAGHFGPIADVRQRAEELKAHHQARLEALLALL-DGPKTAWELSLHLFPQELDPAG 284 (317)
T ss_dssp HHHHHHHHH-HHHHTS-CCSEEEESSSSCBSCHHHHHHHHHHHHHHHHHHHHHHC-SSCBCHHHHHHHHCC-------
T ss_pred hHHHHHHHH-HHHhcC-CCCEEECCCCCccCCHHHHHHHHHHHHHHHHHHHHHHh-cCCCCHHHHHHHHhhcccChhH
Confidence 344555553 555555 347899999988754 3333211000000111112 456788999888765 565443
No 16
>3bpj_A Eukaryotic translation initiation factor 3 subuni; EIF3S1, structural genomics, limited proteolysis, phosphoprotein, protein biosynthesis; 1.85A {Homo sapiens}
Probab=26.70 E-value=88 Score=22.85 Aligned_cols=31 Identities=16% Similarity=0.350 Sum_probs=27.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc
Q 024169 236 VEMILEQILTALTYEEQKALYMKLGEILQER 266 (271)
Q Consensus 236 ~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~~ 266 (271)
++.+++.++.+|+.+|.+++-..|+....++
T Consensus 40 ~~~lir~l~~~L~~~dikkv~s~l~~l~nEK 70 (80)
T 3bpj_A 40 LEVLVRDVCISLEIDDLKKITNSLTVLCSEK 70 (80)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHHHH
Confidence 5788888999999999999999999887665
No 17
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=26.33 E-value=83 Score=24.31 Aligned_cols=30 Identities=17% Similarity=0.280 Sum_probs=24.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q 024169 236 VEMILEQILTALTYEEQKALYMKLGEILQE 265 (271)
Q Consensus 236 ~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~ 265 (271)
.....+.+...++++|+..+.+.|+++..+
T Consensus 128 ~~~~~~~~~~~l~~~e~~~l~~~L~~l~~~ 157 (161)
T 3e6m_A 128 INDFHAELVGNVDPDKLQTCIEVLGEILKG 157 (161)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 445566677889999999999999988764
No 18
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=26.24 E-value=71 Score=23.99 Aligned_cols=30 Identities=20% Similarity=0.247 Sum_probs=23.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q 024169 236 VEMILEQILTALTYEEQKALYMKLGEILQE 265 (271)
Q Consensus 236 ~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~ 265 (271)
.....+.+...|+++|+..+.+.|+++..+
T Consensus 112 ~~~~~~~~~~~l~~~e~~~l~~~L~~l~~~ 141 (143)
T 3oop_A 112 VEASCEKMFAGVTRTDLEQFTAILKNISTN 141 (143)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 345556666789999999999999988764
No 19
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=26.15 E-value=84 Score=23.81 Aligned_cols=30 Identities=13% Similarity=0.062 Sum_probs=23.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q 024169 236 VEMILEQILTALTYEEQKALYMKLGEILQE 265 (271)
Q Consensus 236 ~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~ 265 (271)
.......+...++++|+..+.+.|+++..+
T Consensus 120 ~~~~~~~~~~~l~~~e~~~l~~~l~~l~~~ 149 (154)
T 2qww_A 120 MYKAMMKVFENLTENEIEELIRLNKKVETL 149 (154)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 455666677889999999999999887654
No 20
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=25.89 E-value=86 Score=24.10 Aligned_cols=30 Identities=7% Similarity=0.148 Sum_probs=23.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q 024169 236 VEMILEQILTALTYEEQKALYMKLGEILQE 265 (271)
Q Consensus 236 ~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~ 265 (271)
.....+.+...++++|+..+.+.|+++.++
T Consensus 125 ~~~~~~~~~~~l~~~e~~~l~~~l~~l~~~ 154 (159)
T 3s2w_A 125 ASEWGEILFSSFDDRQRREITNSLEIMFEN 154 (159)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 345556667789999999999999887654
No 21
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=25.20 E-value=60 Score=24.64 Aligned_cols=30 Identities=30% Similarity=0.245 Sum_probs=23.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q 024169 236 VEMILEQILTALTYEEQKALYMKLGEILQE 265 (271)
Q Consensus 236 ~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~ 265 (271)
.+...+.+...++++|+..+.+.|+++..|
T Consensus 118 ~~~~~~~~~~~l~~~e~~~l~~~L~~l~~~ 147 (148)
T 3jw4_A 118 FLEVEESITKGLTKDEQKQLMSILIKVNRS 147 (148)
T ss_dssp HHHHHHHTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Confidence 344555566789999999999999988765
No 22
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=25.19 E-value=77 Score=23.61 Aligned_cols=29 Identities=24% Similarity=0.222 Sum_probs=22.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q 024169 237 EMILEQILTALTYEEQKALYMKLGEILQE 265 (271)
Q Consensus 237 ~~~~~~~~~~l~~~~~~~l~~~l~~~~~~ 265 (271)
+...+.+...++++|+.++.+.|+++.++
T Consensus 114 ~~~~~~~~~~l~~~e~~~l~~~l~~l~~~ 142 (146)
T 2fbh_A 114 ASVRNDVLTGIDESEQALCQQVLLRILAN 142 (146)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 44555666789999999999999887654
No 23
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=25.08 E-value=91 Score=23.79 Aligned_cols=29 Identities=17% Similarity=0.351 Sum_probs=22.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q 024169 237 EMILEQILTALTYEEQKALYMKLGEILQE 265 (271)
Q Consensus 237 ~~~~~~~~~~l~~~~~~~l~~~l~~~~~~ 265 (271)
+...+.+...+++||+..+.+.|+++..+
T Consensus 120 ~~~~~~~~~~l~~ee~~~l~~~L~~l~~~ 148 (154)
T 2eth_A 120 ESLLKSVLEKFSEEDFKVVSEGFNRMVEA 148 (154)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 45556677889999999999998887654
No 24
>1fqj_C Retinal ROD rhodopsin-sensitive CGMP 3',5'- cyclic phosphodiesterase gamma-subunit...; RGS9, transducin, effector, pdegamma, G protein; HET: GDP; 2.02A {Bos taurus} SCOP: j.51.1.1
Probab=24.64 E-value=26 Score=22.76 Aligned_cols=18 Identities=39% Similarity=0.861 Sum_probs=11.2
Q ss_pred CCCCCCCCCCCCcchhhh
Q 024169 193 KIKDFGDSIPGHGGITDR 210 (271)
Q Consensus 193 gIKD~G~~iPGHGGiLDR 210 (271)
|+|-+|+-+|||-|.---
T Consensus 1 gv~gf~~~ipGmeglgtD 18 (42)
T 1fqj_C 1 GVQGFGDDIPGMEGLGTD 18 (42)
T ss_dssp ----CTTCCSCCTTCCHH
T ss_pred CCcccccccccccccCCC
Confidence 678999999999776443
No 25
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=24.23 E-value=81 Score=23.28 Aligned_cols=29 Identities=17% Similarity=0.192 Sum_probs=22.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q 024169 237 EMILEQILTALTYEEQKALYMKLGEILQE 265 (271)
Q Consensus 237 ~~~~~~~~~~l~~~~~~~l~~~l~~~~~~ 265 (271)
+.....+...++++|+.++.+.|+++..+
T Consensus 105 ~~~~~~~~~~l~~~e~~~l~~~l~~~~~~ 133 (138)
T 3bpv_A 105 ERWEDLLFRDFTEDERKLFRKMCRRLAEE 133 (138)
T ss_dssp HHHHHHHTTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 34555566789999999999999888654
No 26
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=24.12 E-value=94 Score=22.87 Aligned_cols=29 Identities=21% Similarity=0.055 Sum_probs=23.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q 024169 237 EMILEQILTALTYEEQKALYMKLGEILQE 265 (271)
Q Consensus 237 ~~~~~~~~~~l~~~~~~~l~~~l~~~~~~ 265 (271)
....+.+...++++|+..+.+.|.++..+
T Consensus 109 ~~~~~~~~~~l~~~e~~~l~~~l~~l~~~ 137 (139)
T 3bja_A 109 SDFLKENCGCFTKEEEGILEDLLLKWKKH 137 (139)
T ss_dssp HHHHHHHHCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Confidence 45556667889999999999999887654
No 27
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=23.87 E-value=87 Score=20.15 Aligned_cols=28 Identities=32% Similarity=0.418 Sum_probs=23.3
Q ss_pred CHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 024169 235 RVEMILEQILTALTYEEQKALYMKLGEIL 263 (271)
Q Consensus 235 ~~~~~~~~~~~~l~~~~~~~l~~~l~~~~ 263 (271)
+.+++++.+ .+||.-|-.+|++.|++-+
T Consensus 2 ~~~~iie~i-~~lTvlE~~eLvk~leekf 29 (40)
T 1dd4_C 2 TIDEIIEAI-EKLTVSELAELVKKLEDKF 29 (40)
T ss_dssp HHHHHHHHH-TTSCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHH-HhCcHHHHHHHHHHHHHHH
Confidence 457889986 6899999999999998753
No 28
>3mg1_A OCP, orange carotenoid protein; carotenoid binding protein, echinone, phycobilisome; HET: ECH; 1.65A {Synechocystis SP} PDB: 3mg2_A* 3mg3_A* 1m98_A*
Probab=23.79 E-value=60 Score=30.05 Aligned_cols=26 Identities=23% Similarity=0.198 Sum_probs=21.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 024169 236 VEMILEQILTALTYEEQKALYMKLGEI 262 (271)
Q Consensus 236 ~~~~~~~~~~~l~~~~~~~l~~~l~~~ 262 (271)
-+.++++| ++||+|||++.++-|-+.
T Consensus 64 ae~ll~qi-k~ms~eeQlqvMrDL~~~ 89 (323)
T 3mg1_A 64 AENALKEI-QAMGPLQQTQAMCDLANR 89 (323)
T ss_dssp HHHHHHHH-HHSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHH-HhCCHHHHHHHHHHHHhC
Confidence 56788887 679999999999887554
No 29
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=22.99 E-value=1e+02 Score=24.18 Aligned_cols=30 Identities=17% Similarity=0.262 Sum_probs=23.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q 024169 236 VEMILEQILTALTYEEQKALYMKLGEILQE 265 (271)
Q Consensus 236 ~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~ 265 (271)
.+.+.+.+...++++|+..+.+.|+++..+
T Consensus 129 ~~~~~~~~~~~l~~~e~~~l~~~L~~l~~~ 158 (166)
T 3deu_A 129 IHKTRGEILAGISSEEIELLIKLIAKLEHN 158 (166)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 345566677789999999999999887653
No 30
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=22.93 E-value=1.1e+02 Score=22.89 Aligned_cols=29 Identities=31% Similarity=0.323 Sum_probs=23.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q 024169 237 EMILEQILTALTYEEQKALYMKLGEILQE 265 (271)
Q Consensus 237 ~~~~~~~~~~l~~~~~~~l~~~l~~~~~~ 265 (271)
......+...++++|+..+.+.|+++.++
T Consensus 116 ~~~~~~~~~~l~~~e~~~l~~~l~~l~~~ 144 (146)
T 3tgn_A 116 LLTYEQVATQFTPNEQKVIQRFLTALVGE 144 (146)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 44556667889999999999999988654
No 31
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=22.91 E-value=99 Score=22.82 Aligned_cols=28 Identities=18% Similarity=0.224 Sum_probs=21.2
Q ss_pred CHHHHHHHHH--hcCCHHHHHHHHHHHHHH
Q 024169 235 RVEMILEQIL--TALTYEEQKALYMKLGEI 262 (271)
Q Consensus 235 ~~~~~~~~~~--~~l~~~~~~~l~~~l~~~ 262 (271)
+.+.+++.+. ..||+||+.+|.+.|+++
T Consensus 94 ~~~~~~~~~~~~~~ls~ee~~~l~~~L~~~ 123 (126)
T 1sd4_A 94 DMKSLVLNFAKNEELNNKEIEELRDILNDI 123 (126)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCCCHHHHHHHHHHHHhh
Confidence 4445555554 479999999999999875
No 32
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=21.78 E-value=1.1e+02 Score=22.97 Aligned_cols=29 Identities=24% Similarity=0.196 Sum_probs=22.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q 024169 237 EMILEQILTALTYEEQKALYMKLGEILQE 265 (271)
Q Consensus 237 ~~~~~~~~~~l~~~~~~~l~~~l~~~~~~ 265 (271)
+...+.+...++++|+..+.+.|+++..+
T Consensus 113 ~~~~~~~~~~l~~~e~~~l~~~l~~l~~~ 141 (155)
T 1s3j_A 113 KAIMARYLSFLTEEEMLQAAHITAKLAQA 141 (155)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 44556677889999999999998887553
No 33
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=21.70 E-value=95 Score=23.65 Aligned_cols=29 Identities=24% Similarity=0.323 Sum_probs=23.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q 024169 237 EMILEQILTALTYEEQKALYMKLGEILQE 265 (271)
Q Consensus 237 ~~~~~~~~~~l~~~~~~~l~~~l~~~~~~ 265 (271)
+...+.+...++++|+..+.+.|+++..+
T Consensus 124 ~~~~~~~~~~l~~~e~~~l~~~l~~l~~~ 152 (160)
T 3boq_A 124 NRILAELLRAVSDQDMVEASAALRGILES 152 (160)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 45556667789999999999999988754
No 34
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=21.57 E-value=1.2e+02 Score=22.34 Aligned_cols=31 Identities=23% Similarity=0.269 Sum_probs=24.3
Q ss_pred CHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q 024169 235 RVEMILEQILTALTYEEQKALYMKLGEILQE 265 (271)
Q Consensus 235 ~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~ 265 (271)
..+.+.+.+...++++|+..+.+.|+++..+
T Consensus 106 ~~~~~~~~~~~~l~~~e~~~l~~~l~~~~~~ 136 (142)
T 3bdd_A 106 HHQAIKTSMNQILTVEESEQFLATLDKLLIG 136 (142)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 3456667777889999999999988887554
No 35
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=21.52 E-value=96 Score=23.75 Aligned_cols=29 Identities=17% Similarity=0.373 Sum_probs=22.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q 024169 237 EMILEQILTALTYEEQKALYMKLGEILQE 265 (271)
Q Consensus 237 ~~~~~~~~~~l~~~~~~~l~~~l~~~~~~ 265 (271)
....+.+...++++|+..+.+.|+++..+
T Consensus 128 ~~~~~~~~~~l~~~e~~~l~~~l~~l~~~ 156 (162)
T 3cjn_A 128 RASHDRMFQGITPQERQAFLATLNKMLAN 156 (162)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 44556667789999999999999887654
No 36
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=21.04 E-value=1.2e+02 Score=23.55 Aligned_cols=29 Identities=14% Similarity=0.214 Sum_probs=23.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q 024169 237 EMILEQILTALTYEEQKALYMKLGEILQE 265 (271)
Q Consensus 237 ~~~~~~~~~~l~~~~~~~l~~~l~~~~~~ 265 (271)
....+.+...++++|+..+.+.|+++..+
T Consensus 121 ~~~~~~~~~~l~~ee~~~l~~~L~~l~~~ 149 (168)
T 2nyx_A 121 RTEIARIVEQMAPAERHGLVRALTAFTEA 149 (168)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 34555667789999999999999888654
No 37
>4gl8_A Oligopeptide ABC transporter oppaiv; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Borrelia burgdorferi B31}
Probab=20.92 E-value=85 Score=29.44 Aligned_cols=35 Identities=14% Similarity=0.114 Sum_probs=29.8
Q ss_pred CCCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc
Q 024169 232 QSFRVEMILEQILTALTYEEQKALYMKLGEILQER 266 (271)
Q Consensus 232 ~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~~ 266 (271)
++..++.+++++.+..++++|.++++++.+.+.++
T Consensus 454 ~n~e~D~ll~~a~~~~D~~~R~~~~~~~q~~l~e~ 488 (529)
T 4gl8_A 454 SNSEYDELLIKSDNERDIFKRQEILKKAEAIIIER 488 (529)
T ss_dssp CCHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHc
Confidence 34558889999988999999999999999988654
No 38
>1r8j_A KAIA; circadian clock protein; 2.03A {Synechococcus elongatus pcc 7942} SCOP: a.186.1.1 c.23.1.5 PDB: 1m2e_A 1m2f_A
Probab=20.58 E-value=62 Score=29.47 Aligned_cols=22 Identities=18% Similarity=0.159 Sum_probs=18.5
Q ss_pred HHhcCCHHHHHHHHHHHHHHHH
Q 024169 243 ILTALTYEEQKALYMKLGEILQ 264 (271)
Q Consensus 243 ~~~~l~~~~~~~l~~~l~~~~~ 264 (271)
..++|+++||.+|+++|+.-..
T Consensus 183 F~rnl~~~ErqeLl~~Lk~~YR 204 (289)
T 1r8j_A 183 FLRNLPAYESQKLHQAMQTSYR 204 (289)
T ss_dssp STTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHH
Confidence 3568999999999999997644
No 39
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=20.45 E-value=1.2e+02 Score=22.75 Aligned_cols=29 Identities=24% Similarity=0.227 Sum_probs=22.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q 024169 237 EMILEQILTALTYEEQKALYMKLGEILQE 265 (271)
Q Consensus 237 ~~~~~~~~~~l~~~~~~~l~~~l~~~~~~ 265 (271)
....+.+...++++|+..+.+.|+++..+
T Consensus 118 ~~~~~~~~~~l~~~e~~~l~~~l~~l~~~ 146 (150)
T 2rdp_A 118 QRDLANVLESFSDEEIVVFERCLRKLHQE 146 (150)
T ss_dssp HHHHHHHGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 34555566789999999999999887654
No 40
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=20.25 E-value=1e+02 Score=22.92 Aligned_cols=29 Identities=24% Similarity=0.251 Sum_probs=21.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q 024169 237 EMILEQILTALTYEEQKALYMKLGEILQE 265 (271)
Q Consensus 237 ~~~~~~~~~~l~~~~~~~l~~~l~~~~~~ 265 (271)
......+...++++|+..+.+.|+++..+
T Consensus 109 ~~~~~~~~~~l~~~e~~~l~~~l~~l~~~ 137 (145)
T 2a61_A 109 ENFIEKITSDLGKEKSSKILDYLKELKGV 137 (145)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 34555566779999999999888877543
No 41
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=20.21 E-value=1.2e+02 Score=23.02 Aligned_cols=30 Identities=17% Similarity=0.360 Sum_probs=23.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q 024169 236 VEMILEQILTALTYEEQKALYMKLGEILQE 265 (271)
Q Consensus 236 ~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~ 265 (271)
.....+.+...++++|+..+.+.|+++..+
T Consensus 124 ~~~~~~~~~~~l~~~e~~~l~~~l~~l~~~ 153 (162)
T 2fa5_A 124 VNEMEQRLMSVFSAEEQQTLERLIDRLAKD 153 (162)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Confidence 345566667789999999999988887653
Done!