Query 024169
Match_columns 271
No_of_seqs 186 out of 1372
Neff 5.4
Searched_HMMs 13730
Date Mon Mar 25 03:34:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024169.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024169hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1zavu1 a.108.1.1 (U:1-30) Rib 57.8 7.5 0.00054 22.1 3.8 27 235-262 2-28 (30)
2 d1tlha_ a.150.1.1 (A:) Anti-si 52.3 5.6 0.00041 28.4 3.3 32 233-265 47-78 (89)
3 d2fbha1 a.4.5.28 (A:8-144) Tra 41.5 13 0.00095 26.8 4.1 30 236-265 104-133 (137)
4 d1m98a1 a.175.1.1 (A:2-175) Or 40.3 11 0.00081 30.0 3.7 27 235-262 62-88 (174)
5 d2p97a1 d.157.1.12 (A:1-200) H 37.5 5.2 0.00038 31.3 1.2 32 184-215 160-196 (200)
6 d3deua1 a.4.5.28 (A:2-141) Tra 37.4 20 0.0015 25.8 4.7 30 236-265 107-136 (140)
7 d3broa1 a.4.5.28 (A:3-137) Tra 37.1 15 0.0011 26.2 3.9 30 236-265 106-135 (135)
8 d1lnwa_ a.4.5.28 (A:) MexR rep 34.6 23 0.0016 25.7 4.6 31 235-265 110-140 (141)
9 d1u7ga_ f.44.1.1 (A:) Ammonium 30.7 5.9 0.00043 35.1 0.5 37 165-204 280-316 (383)
10 d2etha1 a.4.5.28 (A:1-140) Put 27.8 36 0.0026 24.3 4.7 30 236-265 107-136 (140)
11 d1t6sa1 a.4.5.60 (A:1-85) Segr 26.4 39 0.0028 22.8 4.4 40 227-266 16-55 (85)
12 d1vmea2 d.157.1.3 (A:1-250) RO 25.2 17 0.0013 28.3 2.5 40 174-214 199-239 (250)
13 d1gyxa_ d.80.1.1 (A:) 4-oxaloc 24.0 29 0.0021 23.5 3.2 21 246-266 11-31 (76)
14 d2fbia1 a.4.5.28 (A:5-140) Pro 24.0 30 0.0022 24.7 3.5 29 235-263 104-132 (136)
15 d2fbka1 a.4.5.28 (A:8-179) Tra 23.8 29 0.0021 26.1 3.6 31 235-265 139-169 (172)
16 d1uqwa_ c.94.1.1 (A:) Hypothet 23.4 33 0.0024 28.8 4.2 35 233-267 416-450 (487)
17 d1lj9a_ a.4.5.28 (A:) Transcri 20.0 51 0.0037 23.8 4.1 29 236-264 104-132 (144)
No 1
>d1zavu1 a.108.1.1 (U:1-30) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Thermotoga maritima [TaxId: 2336]}
Probab=57.82 E-value=7.5 Score=22.09 Aligned_cols=27 Identities=33% Similarity=0.409 Sum_probs=22.8
Q ss_pred CHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 024169 235 RVEMILEQILTALTYEEQKALYMKLGEI 262 (271)
Q Consensus 235 ~~~~~~~~~~~~l~~~~~~~l~~~l~~~ 262 (271)
+++.+++.| .+|+..|-.+|+++|.+-
T Consensus 2 ~~eeiv~ai-ekltvaelaelvk~ledk 28 (30)
T d1zavu1 2 TIDEIIEAI-EKLTVSELAELVKKLEDK 28 (30)
T ss_dssp CHHHHHHHH-HHSBHHHHHHHHHHHHHH
T ss_pred CHHHHHHHH-HHhhHHHHHHHHHHHHhh
Confidence 678888865 679999999999998763
No 2
>d1tlha_ a.150.1.1 (A:) Anti-sigma factor AsiA {Bacteriophage T4 [TaxId: 10665]}
Probab=52.25 E-value=5.6 Score=28.36 Aligned_cols=32 Identities=22% Similarity=0.314 Sum_probs=24.3
Q ss_pred CCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q 024169 233 SFRVEMILEQILTALTYEEQKALYMKLGEILQE 265 (271)
Q Consensus 233 ~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~ 265 (271)
.++-.+.-+ +.+.||++||.+++++.|+...+
T Consensus 47 eft~~sFrq-m~~~Lt~~er~elie~FneG~~d 78 (89)
T d1tlha_ 47 KLNQNSFRK-IVSELTQEDKKTLIDEFNEGFEG 78 (89)
T ss_dssp ECCHHHHHH-HHHSSCHHHHHHHHHHCHHHHHH
T ss_pred HHHHhHHHH-HHHHCCHHHHHHHHHHHHhHHHH
Confidence 455555555 56889999999999999987543
No 3
>d2fbha1 a.4.5.28 (A:8-144) Transcriptional regulator PA3341 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=41.50 E-value=13 Score=26.77 Aligned_cols=30 Identities=23% Similarity=0.216 Sum_probs=24.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q 024169 236 VEMILEQILTALTYEEQKALYMKLGEILQE 265 (271)
Q Consensus 236 ~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~ 265 (271)
...+.+.+...+++||+..+.+.|.+++.+
T Consensus 104 ~~~~~~~~~~~l~~~e~~~l~~~l~~l~~~ 133 (137)
T d2fbha1 104 AASVRNDVLTGIDESEQALCQQVLLRILAN 133 (137)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 456667777889999999999999988654
No 4
>d1m98a1 a.175.1.1 (A:2-175) Orange carotenoid protein, N-terminal domain {Cyanobacteria (Arthrospira maxima) [TaxId: 129910]}
Probab=40.30 E-value=11 Score=30.01 Aligned_cols=27 Identities=22% Similarity=0.170 Sum_probs=22.0
Q ss_pred CHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 024169 235 RVEMILEQILTALTYEEQKALYMKLGEI 262 (271)
Q Consensus 235 ~~~~~~~~~~~~l~~~~~~~l~~~l~~~ 262 (271)
.-+.++++| ++||++||++.++-|-+.
T Consensus 62 ~ae~ll~qi-k~ms~~EQlq~MrDL~~~ 88 (174)
T d1m98a1 62 FAENTLQEI-RQMTPLQQTQAMCDLANR 88 (174)
T ss_dssp HHHHHHHHH-HHSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHH-HhCCHHHHHHHHHHHHhC
Confidence 367888987 679999999999887654
No 5
>d2p97a1 d.157.1.12 (A:1-200) Hypothetical protein Ava3068 {Anabaena variabilis [TaxId: 1172]}
Probab=37.54 E-value=5.2 Score=31.25 Aligned_cols=32 Identities=16% Similarity=0.274 Sum_probs=23.8
Q ss_pred HHHHHhhcCCCCCCCCCCCCCcch-----hhhhhhhh
Q 024169 184 FASGFKRAFKIKDFGDSIPGHGGI-----TDRMDCQM 215 (271)
Q Consensus 184 ~~S~iKR~~gIKD~G~~iPGHGGi-----LDR~Dsll 215 (271)
....++|-...+|+-.++||||.. -+|++.++
T Consensus 160 ~~~sl~rl~~l~~~~~i~pgHG~~~~~~~~~rl~~l~ 196 (200)
T d2p97a1 160 VVASVRRLAALEKVEAVLVGDGWSVFRDGRDRLKELV 196 (200)
T ss_dssp HHHHHHHHHTCTTCCEEEESBBCCBCSCHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcEEECCCCchHhcCHHHHHHHHH
Confidence 346688888899988999999954 34666554
No 6
>d3deua1 a.4.5.28 (A:2-141) Transcriptional regulator SlyA {Salmonella typhimurium [TaxId: 90371]}
Probab=37.38 E-value=20 Score=25.76 Aligned_cols=30 Identities=17% Similarity=0.262 Sum_probs=24.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q 024169 236 VEMILEQILTALTYEEQKALYMKLGEILQE 265 (271)
Q Consensus 236 ~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~ 265 (271)
.+...+.+...++++|+..+.+.|+++..|
T Consensus 107 ~~~~~~~~~~~l~~ee~~~~~~~L~~i~~n 136 (140)
T d3deua1 107 IHKTRGEILAGISSEEIELLIKLIAKLEHN 136 (140)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 455667778899999999999999888665
No 7
>d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854 {Oenococcus oeni [TaxId: 1247]}
Probab=37.05 E-value=15 Score=26.24 Aligned_cols=30 Identities=20% Similarity=0.180 Sum_probs=25.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q 024169 236 VEMILEQILTALTYEEQKALYMKLGEILQE 265 (271)
Q Consensus 236 ~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~ 265 (271)
.+...+.+...+++||+..+.+.|+++++|
T Consensus 106 ~~~~~~~~~~~l~~ee~~~~~~~L~~l~~N 135 (135)
T d3broa1 106 MDSDQSQMTSGLNKEEVVFLEKILKRMIES 135 (135)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 456666777889999999999999999876
No 8
>d1lnwa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]}
Probab=34.58 E-value=23 Score=25.70 Aligned_cols=31 Identities=23% Similarity=0.270 Sum_probs=25.3
Q ss_pred CHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q 024169 235 RVEMILEQILTALTYEEQKALYMKLGEILQE 265 (271)
Q Consensus 235 ~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~ 265 (271)
..+...+.+...+|++|+..+.+.|++++.-
T Consensus 110 ~~~~~~~~~~~~ls~~e~~~l~~~L~kl~a~ 140 (141)
T d1lnwa_ 110 IMSRVHDELFAPLTPVEQATLVHLLDQCLAA 140 (141)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Confidence 3455667778899999999999999998753
No 9
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=30.70 E-value=5.9 Score=35.08 Aligned_cols=37 Identities=27% Similarity=0.399 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHhhcCCCCCCCCCCCCC
Q 024169 165 WHALCLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGH 204 (271)
Q Consensus 165 ~~~l~l~~~~sl~a~~GDL~~S~iKR~~gIKD~G~~iPGH 204 (271)
|.+++++++++++..++ ...+||++++-|--+.+|-|
T Consensus 280 ~~A~~iG~i~g~i~~~~---~~~l~~~~~iDD~~~~~~vH 316 (383)
T d1u7ga_ 280 GGALIIGVVAGLAGLWG---VTMLKRLLRVDDPCDVFGVH 316 (383)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHCSCCGGGHHHHH
T ss_pred hhHHHHHhhccHHHHHH---HHHHHhhcccccccceEeeh
Confidence 67888899888888876 34678889999988888888
No 10
>d2etha1 a.4.5.28 (A:1-140) Putative transcriptional regulator TM0816 {Thermotoga maritima [TaxId: 2336]}
Probab=27.79 E-value=36 Score=24.30 Aligned_cols=30 Identities=17% Similarity=0.340 Sum_probs=24.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q 024169 236 VEMILEQILTALTYEEQKALYMKLGEILQE 265 (271)
Q Consensus 236 ~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~ 265 (271)
.....+.+..+++++|+..+.+.|+++.++
T Consensus 107 ~~~~~~~~~~~~~~~e~~~~~~~l~~i~~~ 136 (140)
T d2etha1 107 FESLLKSVLEKFSEEDFKVVSEGFNRMVEA 136 (140)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 456667778899999999999999888664
No 11
>d1t6sa1 a.4.5.60 (A:1-85) Segregation and condensation protein B, ScpB {Chlorobium tepidum [TaxId: 1097]}
Probab=26.44 E-value=39 Score=22.84 Aligned_cols=40 Identities=10% Similarity=0.076 Sum_probs=31.4
Q ss_pred HhhcCCCCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc
Q 024169 227 SFIVPQSFRVEMILEQILTALTYEEQKALYMKLGEILQER 266 (271)
Q Consensus 227 ~fi~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~~ 266 (271)
.|...+..|++.+.+.+-...+.++..+.++.|++.+.++
T Consensus 16 LFas~~Pls~~~L~~~l~~~~~~~~i~~~l~~L~~~y~~~ 55 (85)
T d1t6sa1 16 IFSSEEPVNLQTLSQITAHKFTPSELQEAVDELNRDYEAT 55 (85)
T ss_dssp HHHCSSCBCHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHhcC
Confidence 4556778999998875433588999999999999998653
No 12
>d1vmea2 d.157.1.3 (A:1-250) ROO-like flavoprotein TM0755, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=25.18 E-value=17 Score=28.31 Aligned_cols=40 Identities=18% Similarity=0.362 Sum_probs=25.3
Q ss_pred HHHhhhhhhHHHHHHhhcCCCCCCCCCCCCCcchh-hhhhhh
Q 024169 174 ASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGIT-DRMDCQ 214 (271)
Q Consensus 174 ~sl~a~~GDL~~S~iKR~~gIKD~G~~iPGHGGiL-DR~Dsl 214 (271)
....++.-+-....+||-.+. |...++||||-++ ++.+.+
T Consensus 199 ~~~~~~~~~~~~~sl~~l~~l-~~~~I~PGHGpi~~~~~~~~ 239 (250)
T d1vmea2 199 VTVIGHYKNYILEGAEKLSSL-KIKALLPGHGLIWKKDPQRL 239 (250)
T ss_dssp HHHHGGGHHHHHHHHHHHHTS-CCSEEEESSSCBBSSCHHHH
T ss_pred cccccccHHHHHHHHHHHHCC-CCCEEECCCChhHhcCHHHH
Confidence 334445555566778886665 4567999999877 334433
No 13
>d1gyxa_ d.80.1.1 (A:) 4-oxalocrotonate tautomerase homologue YdcE {Escherichia coli [TaxId: 562]}
Probab=24.04 E-value=29 Score=23.51 Aligned_cols=21 Identities=14% Similarity=0.306 Sum_probs=18.3
Q ss_pred cCCHHHHHHHHHHHHHHHHhc
Q 024169 246 ALTYEEQKALYMKLGEILQER 266 (271)
Q Consensus 246 ~l~~~~~~~l~~~l~~~~~~~ 266 (271)
+||+|++++|.+.+++.+.+.
T Consensus 11 ~lT~EQK~~L~~~iT~a~~~~ 31 (76)
T d1gyxa_ 11 ELDEQQKAALAADITDVIIRH 31 (76)
T ss_dssp CCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHH
Confidence 489999999999999987654
No 14
>d2fbia1 a.4.5.28 (A:5-140) Probable transcriptional regulator PA4135 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=24.00 E-value=30 Score=24.66 Aligned_cols=29 Identities=21% Similarity=0.174 Sum_probs=23.7
Q ss_pred CHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 024169 235 RVEMILEQILTALTYEEQKALYMKLGEIL 263 (271)
Q Consensus 235 ~~~~~~~~~~~~l~~~~~~~l~~~l~~~~ 263 (271)
..+...+.+..+|++||+..+.+.|+++-
T Consensus 104 ~~~~~~~~~~~~l~~ee~~~l~~~L~~l~ 132 (136)
T d2fbia1 104 DMEKNYQRIQERFGEEKLAQLLELLNELK 132 (136)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 34566777788899999999999999863
No 15
>d2fbka1 a.4.5.28 (A:8-179) Transcriptional regulator DR1159 {Deinococcus radiodurans [TaxId: 1299]}
Probab=23.78 E-value=29 Score=26.13 Aligned_cols=31 Identities=23% Similarity=0.284 Sum_probs=25.0
Q ss_pred CHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q 024169 235 RVEMILEQILTALTYEEQKALYMKLGEILQE 265 (271)
Q Consensus 235 ~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~ 265 (271)
......+.+...|+++|+..|.+.|++++.+
T Consensus 139 ~~~~~~~~~~~~l~~~E~~~l~~~L~kl~~~ 169 (172)
T d2fbka1 139 AHLATTQRVLAPLSAQEQRTLEELAGRMLAG 169 (172)
T ss_dssp HHHHHHHHHHTTSCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 3455666777899999999999999998764
No 16
>d1uqwa_ c.94.1.1 (A:) Hypothetical protein YliB {Escherichia coli [TaxId: 562]}
Probab=23.43 E-value=33 Score=28.82 Aligned_cols=35 Identities=23% Similarity=0.258 Sum_probs=30.6
Q ss_pred CCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcc
Q 024169 233 SFRVEMILEQILTALTYEEQKALYMKLGEILQERL 267 (271)
Q Consensus 233 ~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~~~ 267 (271)
...++.+++++.+..+++||.++++++-+.+.++.
T Consensus 416 ~~~~d~l~~~a~~~~d~~~r~~~~~~~~~~l~~~~ 450 (487)
T d1uqwa_ 416 NKQVDDFLAQALKTNDPAEKTRLYKAAQDIIWQES 450 (487)
T ss_dssp CHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhC
Confidence 44588999999889999999999999999988875
No 17
>d1lj9a_ a.4.5.28 (A:) Transcriptional regulator SlyA {Enterococcus faecalis [TaxId: 1351]}
Probab=20.02 E-value=51 Score=23.75 Aligned_cols=29 Identities=17% Similarity=-0.004 Sum_probs=22.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 024169 236 VEMILEQILTALTYEEQKALYMKLGEILQ 264 (271)
Q Consensus 236 ~~~~~~~~~~~l~~~~~~~l~~~l~~~~~ 264 (271)
.....+.+...+++||+..+.+.|..+.+
T Consensus 104 ~~~~~~~~~~~l~~ee~~~l~~~L~~l~~ 132 (144)
T d1lj9a_ 104 NQHSNQVALQGLSEVEISQLADYLVRMRK 132 (144)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 44555667788999999999999887744
Done!