BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024171
(271 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q04832|HEXP_LEIMA DNA-binding protein HEXBP OS=Leishmania major GN=HEXBP PE=4 SV=1
Length = 271
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 83/281 (29%), Positives = 109/281 (38%), Gaps = 99/281 (35%)
Query: 51 CNNCKRPGHFARECPNV--------AVCNNCGLPGHIASECTTQAR--------CWNCRE 94
C NC + GH+ARECP C CG GH++ EC +AR C+ C E
Sbjct: 18 CRNCGKEGHYARECPEADSKGDERSTTCFRCGEEGHMSRECPNEARSGAAGAMTCFRCGE 77
Query: 95 PGHMASNCHNEGI--------CHSCGKTGHRARDCSTH----------------VQSG-- 128
GHM+ +C N C+ CG+ GH +RDC + Q G
Sbjct: 78 AGHMSRDCPNSAKPGAAKGFECYKCGQEGHLSRDCPSSQGGSRGGYGQKRGRSGAQGGYS 137
Query: 129 GDLRLCNNCYKPGHIAADCTN---------DKACKNCRKTGHIARDCQN---------EP 170
GD R C C GHI+ DC N D+ C C GHI+RDC N +
Sbjct: 138 GD-RTCYKCGDAGHISRDCPNGQGGYSGAGDRTCYKCGDAGHISRDCPNGQGGYSGAGDR 196
Query: 171 VCNLCNIAGHVARQCPKGDSLGERGGGGGGERGGGGGGDGGGGGGRYVGYHDVICRSCNQ 230
C C +GH++R+CP S G D C C +
Sbjct: 197 KCYKCGESGHMSRECPSAGSTGS---------------------------GDRACYKCGK 229
Query: 231 MGHMSRDCVGPLI-----------ICRNCGGRGHMAYECPS 260
GH+SR+C C CG GH++ +CPS
Sbjct: 230 PGHISRECPEAGGSYGGSRGGGDRTCYKCGEAGHISRDCPS 270
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 73/175 (41%), Gaps = 54/175 (30%)
Query: 46 SQGNLCNNCKRPGHFARECPNVA------------------------VCNNCGLPGHIAS 81
++G C C + GH +R+CP+ C CG GHI+
Sbjct: 94 AKGFECYKCGQEGHLSRDCPSSQGGSRGGYGQKRGRSGAQGGYSGDRTCYKCGDAGHISR 153
Query: 82 ECTT---------QARCWNCREPGHMASNCHN---------EGICHSCGKTGHRARDCST 123
+C C+ C + GH++ +C N + C+ CG++GH +R+C +
Sbjct: 154 DCPNGQGGYSGAGDRTCYKCGDAGHISRDCPNGQGGYSGAGDRKCYKCGESGHMSRECPS 213
Query: 124 HVQSGGDLRLCNNCYKPGHIAADCTN------------DKACKNCRKTGHIARDC 166
+G R C C KPGHI+ +C D+ C C + GHI+RDC
Sbjct: 214 AGSTGSGDRACYKCGKPGHISRECPEAGGSYGGSRGGGDRTCYKCGEAGHISRDC 268
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 50/131 (38%), Gaps = 41/131 (31%)
Query: 152 ACKNCRKTGHIARDC--------QNEPVCNLCNIAGHVARQCPKGDSLGERGGGGGGERG 203
+C+NC K GH AR+C + C C GH++R+CP G G
Sbjct: 17 SCRNCGKEGHYARECPEADSKGDERSTTCFRCGEEGHMSRECPNEARSGAAGA------- 69
Query: 204 GGGGGDGGGGGGRYVGYHDVICRSCNQMGHMSRDC-------VGPLIICRNCGGRGHMAY 256
+ C C + GHMSRDC C CG GH++
Sbjct: 70 -------------------MTCFRCGEAGHMSRDCPNSAKPGAAKGFECYKCGQEGHLSR 110
Query: 257 ECPSGRIADRG 267
+CPS + RG
Sbjct: 111 DCPSSQGGSRG 121
>sp|P53849|GIS2_YEAST Zinc finger protein GIS2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=GIS2 PE=1 SV=1
Length = 153
Score = 91.3 bits (225), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 84/151 (55%), Gaps = 16/151 (10%)
Query: 51 CNNCKRPGHFARECPNVAVCNNCGLPGHIASECTTQ-----ARCWNCREPGHMASNCHNE 105
C C + GH A +C + +C NC PGH+ ++CT +C+NC E GH+ S C +
Sbjct: 6 CYVCGKIGHLAEDCDSERLCYNCNKPGHVQTDCTMPRTVEFKQCYNCGETGHVRSECTVQ 65
Query: 106 GICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYK---PGHIAADCTNDK-----ACKNCR 157
C +C +TGH +R+C ++ ++ +CYK P H+A DC + C C
Sbjct: 66 R-CFNCNQTGHISRECPEPKKTSRFSKV--SCYKCGGPNHMAKDCMKEDGISGLKCYTCG 122
Query: 158 KTGHIARDCQNEPVCNLCNIAGHVARQCPKG 188
+ GH++RDCQN+ +C CN GH+++ CPK
Sbjct: 123 QAGHMSRDCQNDRLCYNCNETGHISKDCPKA 153
Score = 85.9 bits (211), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/130 (39%), Positives = 70/130 (53%), Gaps = 16/130 (12%)
Query: 50 LCNNCKRPGHFARECP-----NVAVCNNCGLPGHIASECTTQARCWNCREPGHMASNC-- 102
LC NC +PGH +C C NCG GH+ SECT Q RC+NC + GH++ C
Sbjct: 24 LCYNCNKPGHVQTDCTMPRTVEFKQCYNCGETGHVRSECTVQ-RCFNCNQTGHISRECPE 82
Query: 103 ------HNEGICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADCTNDKACKNC 156
++ C+ CG H A+DC + G C C + GH++ DC ND+ C NC
Sbjct: 83 PKKTSRFSKVSCYKCGGPNHMAKDCMK--EDGISGLKCYTCGQAGHMSRDCQNDRLCYNC 140
Query: 157 RKTGHIARDC 166
+TGHI++DC
Sbjct: 141 NETGHISKDC 150
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 78/163 (47%), Gaps = 16/163 (9%)
Query: 104 NEGICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADCT-----NDKACKNCRK 158
++ C+ CGK GH A DC + RLC NC KPGH+ DCT K C NC +
Sbjct: 2 SQKACYVCGKIGHLAEDCDSE-------RLCYNCNKPGHVQTDCTMPRTVEFKQCYNCGE 54
Query: 159 TGHIARDCQNEPVCNLCNIAGHVARQCPKGDSLGERGGGGGGERGGGGGGDGGGGGGRYV 218
TGH+ +C + N CN GH++R+CP+ + GG +
Sbjct: 55 TGHVRSECTVQRCFN-CNQTGHISRECPEPKKTSRFSKVSCYK--CGGPNHMAKDCMKED 111
Query: 219 GYHDVICRSCNQMGHMSRDCVGPLIICRNCGGRGHMAYECPSG 261
G + C +C Q GHMSRDC + C NC GH++ +CP
Sbjct: 112 GISGLKCYTCGQAGHMSRDCQNDRL-CYNCNETGHISKDCPKA 153
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 47/118 (39%), Gaps = 31/118 (26%)
Query: 149 NDKACKNCRKTGHIARDCQNEPVCNLCNIAGHVARQCPKGDSLGERGGGGGGERGGGGGG 208
+ KAC C K GH+A DC +E +C CN GHV C ++ +
Sbjct: 2 SQKACYVCGKIGHLAEDCDSERLCYNCNKPGHVQTDCTMPRTVEFKQ------------- 48
Query: 209 DGGGGGGRYVGYHDVICRSCNQMGHMSRDCVGPLIICRNCGGRGHMAYECPSGRIADR 266
C +C + GH+ +C + C NC GH++ ECP + R
Sbjct: 49 ----------------CYNCGETGHVRSECT--VQRCFNCNQTGHISRECPEPKKTSR 88
Score = 33.1 bits (74), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 48 GNLCNNCKRPGHFARECPNVAVCNNCGLPGHIASEC 83
G C C + GH +R+C N +C NC GHI+ +C
Sbjct: 115 GLKCYTCGQAGHMSRDCQNDRLCYNCNETGHISKDC 150
>sp|Q3T0Q6|CNBP_BOVIN Cellular nucleic acid-binding protein OS=Bos taurus GN=CNBP PE=2
SV=1
Length = 170
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/167 (37%), Positives = 81/167 (48%), Gaps = 36/167 (21%)
Query: 49 NLCNNCKRPGHFARECPNVA----------------------VCNNCGLPGHIASECTTQ 86
N C C R GH+ARECP +C CG GH+A +C Q
Sbjct: 4 NECFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDCDLQ 63
Query: 87 A-RCWNCREPGHMASNCHN-----EGICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKP 140
C+NC GH+A +C E C++CGK GH ARDC D + C +C +
Sbjct: 64 EDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDH-----ADEQKCYSCGEF 118
Query: 141 GHIAADCTNDKACKNCRKTGHIARDCQ--NEPVCNLCNIAGHVARQC 185
GHI DCT K C C +TGH+A +C +E C C +GH+AR+C
Sbjct: 119 GHIQKDCTKVK-CYRCGETGHVAINCSKTSEVNCYRCGESGHLAREC 164
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 75/138 (54%), Gaps = 18/138 (13%)
Query: 44 SFSQGNLCNNCKRPGHFARECP-NVAVCNNCGLPGHIASECTTQAR-----CWNCREPGH 97
S S ++C C GH A++C C NCG GHIA +C R C+NC +PGH
Sbjct: 40 SSSLPDICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGH 99
Query: 98 MASNCH--NEGICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADC--TNDKAC 153
+A +C +E C+SCG+ GH +DC T V+ C C + GH+A +C T++ C
Sbjct: 100 LARDCDHADEQKCYSCGEFGHIQKDC-TKVK-------CYRCGETGHVAINCSKTSEVNC 151
Query: 154 KNCRKTGHIARDCQNEPV 171
C ++GH+AR+C E
Sbjct: 152 YRCGESGHLARECTIEAT 169
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 55/93 (59%), Gaps = 7/93 (7%)
Query: 39 RETRRSFSQGNLCNNCKRPGHFARECPNV--AVCNNCGLPGHIASECTTQARCWNCREPG 96
+E +R Q C NC +PGH AR+C + C +CG GHI +CT + +C+ C E G
Sbjct: 81 KEPKREREQ--CCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCT-KVKCYRCGETG 137
Query: 97 HMASNCH--NEGICHSCGKTGHRARDCSTHVQS 127
H+A NC +E C+ CG++GH AR+C+ +
Sbjct: 138 HVAINCSKTSEVNCYRCGESGHLARECTIEATA 170
Score = 32.3 bits (72), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 224 ICRSCNQMGHMSRDCVGPLIICRNCGGRGHMAYECPSGR 262
IC C + GH+++DC C NCG GH+A +C +
Sbjct: 46 ICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPK 84
>sp|P36627|BYR3_SCHPO Cellular nucleic acid-binding protein homolog
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=byr3 PE=4 SV=1
Length = 179
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 83/170 (48%), Gaps = 23/170 (13%)
Query: 35 PPLRRETRRSFSQGNLCNNCKRPGHFARECPNVAVCNNCGLPGHIASECT---TQARCWN 91
P + + TR G C NC GH AREC ++C NC GH ASECT + C+
Sbjct: 7 PTVPQTTR----PGPRCYNCGENGHQARECTKGSICYNCNQTGHKASECTEPQQEKTCYA 62
Query: 92 CREPGHMASNCHNE------GICHSCGKTGHRARDCSTH-VQSGGDL---RLCNNCY--- 138
C GH+ +C + C+ CG+ GH ARDC T+ QSGG R NCY
Sbjct: 63 CGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACG 122
Query: 139 KPGHIAADCTNDKACKNCRKTGHIARDCQNEP---VCNLCNIAGHVARQC 185
GH A DCT C +C K GH + +CQ +C CN GH+A C
Sbjct: 123 SYGHQARDCTMGVKCYSCGKIGHRSFECQQASDGQLCYKCNQPGHIAVNC 172
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 78/172 (45%), Gaps = 39/172 (22%)
Query: 108 CHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADCT---NDKACKNCRKTGHIAR 164
C++CG+ GH+AR+C+ +C NC + GH A++CT +K C C GH+ R
Sbjct: 19 CYNCGENGHQARECT-------KGSICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVR 71
Query: 165 DCQNEP------VCNLCNIAGHVARQCPKGDSLGERGGGGGGERGGGGGGDGGGGGGRYV 218
DC + P C C GH+AR C +G GGR+
Sbjct: 72 DCPSSPNPRQGAECYKCGRVGHIARDCRT---------------------NGQQSGGRFG 110
Query: 219 GY-HDVICRSCNQMGHMSRDCVGPLIICRNCGGRGHMAYECPSGRIADRGYR 269
G+ ++ C +C GH +RDC + C +CG GH ++EC Y+
Sbjct: 111 GHRSNMNCYACGSYGHQARDCTMG-VKCYSCGKIGHRSFECQQASDGQLCYK 161
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 72/176 (40%), Gaps = 36/176 (20%)
Query: 88 RCWNCREPGHMASNCHNEGICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADC 147
RC+NC E GH A C IC++C +TGH+A +C+ Q + C C GH+ DC
Sbjct: 18 RCYNCGENGHQARECTKGSICYNCNQTGHKASECTEPQQE----KTCYACGTAGHLVRDC 73
Query: 148 TND------KACKNCRKTGHIARDC--------------QNEPVCNLCNIAGHVARQCPK 187
+ C C + GHIARDC ++ C C GH AR C
Sbjct: 74 PSSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTM 133
Query: 188 GDSLGERGGGGGGERGGGGGGDGGGGGGRYVGYHDVICRSCNQMGHMSRDCVGPLI 243
G G G DG +C CNQ GH++ +C P+I
Sbjct: 134 GVKCYSCGKIGHRSFECQQASDG------------QLCYKCNQPGHIAVNCTSPVI 177
Score = 35.0 bits (79), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 224 ICRSCNQMGHMSRDCVGPLI--ICRNCGGRGHMAYECPSGRIADRGYRRY 271
IC +CNQ GH + +C P C CG GH+ +CPS +G Y
Sbjct: 37 ICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAECY 86
>sp|O42395|CNBP_CHICK Cellular nucleic acid-binding protein OS=Gallus gallus GN=CNBP PE=2
SV=1
Length = 172
Score = 82.4 bits (202), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 81/169 (47%), Gaps = 38/169 (22%)
Query: 49 NLCNNCKRPGHFARECPNVA-----------------------VCNNCGLPGHIASECTT 85
N C C R GH+ARECP +C CG GH+A +C
Sbjct: 4 NECFKCGRTGHWARECPTGIGRGRGMRSRGRAGFQFMSSSLPDICYRCGESGHLAKDCDL 63
Query: 86 QA--RCWNCREPGHMASNCHN-----EGICHSCGKTGHRARDCSTHVQSGGDLRLCNNCY 138
Q C+NC GH+A +C E C++CGK GH ARDC D + C +C
Sbjct: 64 QEDKACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDH-----ADEQKCYSCG 118
Query: 139 KPGHIAADCTNDKACKNCRKTGHIARDCQ--NEPVCNLCNIAGHVARQC 185
+ GHI DCT K C C +TGH+A +C +E C C +GH+AR+C
Sbjct: 119 EFGHIQKDCTKVK-CYRCGETGHVAINCSKTSEVNCYRCGESGHLAREC 166
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 75/139 (53%), Gaps = 19/139 (13%)
Query: 44 SFSQGNLCNNCKRPGHFAREC--PNVAVCNNCGLPGHIASECTTQAR-----CWNCREPG 96
S S ++C C GH A++C C NCG GHIA +C R C+NC +PG
Sbjct: 41 SSSLPDICYRCGESGHLAKDCDLQEDKACYNCGRGGHIAKDCKEPKREREQCCYNCGKPG 100
Query: 97 HMASNCH--NEGICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADC--TNDKA 152
H+A +C +E C+SCG+ GH +DC T V+ C C + GH+A +C T++
Sbjct: 101 HLARDCDHADEQKCYSCGEFGHIQKDC-TKVK-------CYRCGETGHVAINCSKTSEVN 152
Query: 153 CKNCRKTGHIARDCQNEPV 171
C C ++GH+AR+C E
Sbjct: 153 CYRCGESGHLARECTIEAT 171
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 68/174 (39%), Gaps = 57/174 (32%)
Query: 108 CHSCGKTGHRARDCST----------------HVQSGGDLRLCNNCYKPGHIAADC--TN 149
C CG+TGH AR+C T S +C C + GH+A DC
Sbjct: 6 CFKCGRTGHWARECPTGIGRGRGMRSRGRAGFQFMSSSLPDICYRCGESGHLAKDCDLQE 65
Query: 150 DKACKNCRKTGHIARDCQN-----EPVCNLCNIAGHVARQCPKGDSLGERGGGGGGERGG 204
DKAC NC + GHIA+DC+ E C C GH+AR C D
Sbjct: 66 DKACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHAD--------------- 110
Query: 205 GGGGDGGGGGGRYVGYHDVICRSCNQMGHMSRDCVGPLIICRNCGGRGHMAYEC 258
+ C SC + GH+ +DC + C CG GH+A C
Sbjct: 111 -----------------EQKCYSCGEFGHIQKDCTK--VKCYRCGETGHVAINC 145
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 55/93 (59%), Gaps = 7/93 (7%)
Query: 39 RETRRSFSQGNLCNNCKRPGHFARECPNV--AVCNNCGLPGHIASECTTQARCWNCREPG 96
+E +R Q C NC +PGH AR+C + C +CG GHI +CT + +C+ C E G
Sbjct: 83 KEPKREREQ--CCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCT-KVKCYRCGETG 139
Query: 97 HMASNCH--NEGICHSCGKTGHRARDCSTHVQS 127
H+A NC +E C+ CG++GH AR+C+ +
Sbjct: 140 HVAINCSKTSEVNCYRCGESGHLARECTIEATA 172
>sp|P62634|CNBP_RAT Cellular nucleic acid-binding protein OS=Rattus norvegicus GN=Cnbp
PE=2 SV=1
Length = 177
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 81/174 (46%), Gaps = 43/174 (24%)
Query: 49 NLCNNCKRPGHFARECPNVA-----------------------------VCNNCGLPGHI 79
N C C R GH+ARECP +C CG GH+
Sbjct: 4 NECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHL 63
Query: 80 ASECTTQA-RCWNCREPGHMASNCHN-----EGICHSCGKTGHRARDCSTHVQSGGDLRL 133
A +C Q C+NC GH+A +C E C++CGK GH ARDC D +
Sbjct: 64 AKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDH-----ADEQK 118
Query: 134 CNNCYKPGHIAADCTNDKACKNCRKTGHIARDCQ--NEPVCNLCNIAGHVARQC 185
C +C + GHI DCT K C C +TGH+A +C +E C C +GH+AR+C
Sbjct: 119 CYSCGEFGHIQKDCTKVK-CYRCGETGHVAINCSKTSEVNCYRCGESGHLAREC 171
Score = 74.3 bits (181), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 75/138 (54%), Gaps = 18/138 (13%)
Query: 44 SFSQGNLCNNCKRPGHFARECP-NVAVCNNCGLPGHIASECTTQAR-----CWNCREPGH 97
S S ++C C GH A++C C NCG GHIA +C R C+NC +PGH
Sbjct: 47 SSSLPDICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGH 106
Query: 98 MASNCH--NEGICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADC--TNDKAC 153
+A +C +E C+SCG+ GH +DC T V+ C C + GH+A +C T++ C
Sbjct: 107 LARDCDHADEQKCYSCGEFGHIQKDC-TKVK-------CYRCGETGHVAINCSKTSEVNC 158
Query: 154 KNCRKTGHIARDCQNEPV 171
C ++GH+AR+C E
Sbjct: 159 YRCGESGHLARECTIEAT 176
Score = 60.8 bits (146), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 55/93 (59%), Gaps = 7/93 (7%)
Query: 39 RETRRSFSQGNLCNNCKRPGHFARECPNV--AVCNNCGLPGHIASECTTQARCWNCREPG 96
+E +R Q C NC +PGH AR+C + C +CG GHI +CT + +C+ C E G
Sbjct: 88 KEPKREREQ--CCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCT-KVKCYRCGETG 144
Query: 97 HMASNCH--NEGICHSCGKTGHRARDCSTHVQS 127
H+A NC +E C+ CG++GH AR+C+ +
Sbjct: 145 HVAINCSKTSEVNCYRCGESGHLARECTIEATA 177
Score = 32.3 bits (72), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 224 ICRSCNQMGHMSRDCVGPLIICRNCGGRGHMAYEC 258
IC C + GH+++DC C NCG GH+A +C
Sbjct: 53 ICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDC 87
>sp|Q5R5R5|CNBP_PONAB Cellular nucleic acid-binding protein OS=Pongo abelii GN=CNBP PE=2
SV=1
Length = 177
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 81/174 (46%), Gaps = 43/174 (24%)
Query: 49 NLCNNCKRPGHFARECPNVA-----------------------------VCNNCGLPGHI 79
N C C R GH+ARECP +C CG GH+
Sbjct: 4 NECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHL 63
Query: 80 ASECTTQA-RCWNCREPGHMASNCHN-----EGICHSCGKTGHRARDCSTHVQSGGDLRL 133
A +C Q C+NC GH+A +C E C++CGK GH ARDC D +
Sbjct: 64 AKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDH-----ADEQK 118
Query: 134 CNNCYKPGHIAADCTNDKACKNCRKTGHIARDCQ--NEPVCNLCNIAGHVARQC 185
C +C + GHI DCT K C C +TGH+A +C +E C C +GH+AR+C
Sbjct: 119 CYSCGEFGHIQKDCTKVK-CYRCGETGHVAINCSKTSEVNCYRCGESGHLAREC 171
Score = 74.3 bits (181), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 75/138 (54%), Gaps = 18/138 (13%)
Query: 44 SFSQGNLCNNCKRPGHFARECP-NVAVCNNCGLPGHIASECTTQAR-----CWNCREPGH 97
S S ++C C GH A++C C NCG GHIA +C R C+NC +PGH
Sbjct: 47 SSSLPDICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGH 106
Query: 98 MASNCH--NEGICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADC--TNDKAC 153
+A +C +E C+SCG+ GH +DC T V+ C C + GH+A +C T++ C
Sbjct: 107 LARDCDHADEQKCYSCGEFGHIQKDC-TKVK-------CYRCGETGHVAINCSKTSEVNC 158
Query: 154 KNCRKTGHIARDCQNEPV 171
C ++GH+AR+C E
Sbjct: 159 YRCGESGHLARECTIEAT 176
Score = 60.8 bits (146), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 55/93 (59%), Gaps = 7/93 (7%)
Query: 39 RETRRSFSQGNLCNNCKRPGHFARECPNV--AVCNNCGLPGHIASECTTQARCWNCREPG 96
+E +R Q C NC +PGH AR+C + C +CG GHI +CT + +C+ C E G
Sbjct: 88 KEPKREREQ--CCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCT-KVKCYRCGETG 144
Query: 97 HMASNCH--NEGICHSCGKTGHRARDCSTHVQS 127
H+A NC +E C+ CG++GH AR+C+ +
Sbjct: 145 HVAINCSKTSEVNCYRCGESGHLARECTIEATA 177
Score = 32.3 bits (72), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 224 ICRSCNQMGHMSRDCVGPLIICRNCGGRGHMAYEC 258
IC C + GH+++DC C NCG GH+A +C
Sbjct: 53 ICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDC 87
>sp|P62633|CNBP_HUMAN Cellular nucleic acid-binding protein OS=Homo sapiens GN=CNBP PE=1
SV=1
Length = 177
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 81/174 (46%), Gaps = 43/174 (24%)
Query: 49 NLCNNCKRPGHFARECPNVA-----------------------------VCNNCGLPGHI 79
N C C R GH+ARECP +C CG GH+
Sbjct: 4 NECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHL 63
Query: 80 ASECTTQA-RCWNCREPGHMASNCHN-----EGICHSCGKTGHRARDCSTHVQSGGDLRL 133
A +C Q C+NC GH+A +C E C++CGK GH ARDC D +
Sbjct: 64 AKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDH-----ADEQK 118
Query: 134 CNNCYKPGHIAADCTNDKACKNCRKTGHIARDCQ--NEPVCNLCNIAGHVARQC 185
C +C + GHI DCT K C C +TGH+A +C +E C C +GH+AR+C
Sbjct: 119 CYSCGEFGHIQKDCTKVK-CYRCGETGHVAINCSKTSEVNCYRCGESGHLAREC 171
Score = 74.3 bits (181), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 75/138 (54%), Gaps = 18/138 (13%)
Query: 44 SFSQGNLCNNCKRPGHFARECP-NVAVCNNCGLPGHIASECTTQAR-----CWNCREPGH 97
S S ++C C GH A++C C NCG GHIA +C R C+NC +PGH
Sbjct: 47 SSSLPDICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGH 106
Query: 98 MASNCH--NEGICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADC--TNDKAC 153
+A +C +E C+SCG+ GH +DC T V+ C C + GH+A +C T++ C
Sbjct: 107 LARDCDHADEQKCYSCGEFGHIQKDC-TKVK-------CYRCGETGHVAINCSKTSEVNC 158
Query: 154 KNCRKTGHIARDCQNEPV 171
C ++GH+AR+C E
Sbjct: 159 YRCGESGHLARECTIEAT 176
Score = 60.8 bits (146), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 55/93 (59%), Gaps = 7/93 (7%)
Query: 39 RETRRSFSQGNLCNNCKRPGHFARECPNV--AVCNNCGLPGHIASECTTQARCWNCREPG 96
+E +R Q C NC +PGH AR+C + C +CG GHI +CT + +C+ C E G
Sbjct: 88 KEPKREREQ--CCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCT-KVKCYRCGETG 144
Query: 97 HMASNCH--NEGICHSCGKTGHRARDCSTHVQS 127
H+A NC +E C+ CG++GH AR+C+ +
Sbjct: 145 HVAINCSKTSEVNCYRCGESGHLARECTIEATA 177
Score = 32.3 bits (72), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 224 ICRSCNQMGHMSRDCVGPLIICRNCGGRGHMAYEC 258
IC C + GH+++DC C NCG GH+A +C
Sbjct: 53 ICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDC 87
>sp|P53996|CNBP_MOUSE Cellular nucleic acid-binding protein OS=Mus musculus GN=Cnbp PE=2
SV=2
Length = 178
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 81/175 (46%), Gaps = 44/175 (25%)
Query: 49 NLCNNCKRPGHFARECPNVA-----------------------------VCNNCGLPGHI 79
N C C R GH+ARECP +C CG GH+
Sbjct: 4 NECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHL 63
Query: 80 ASECTTQA--RCWNCREPGHMASNCHN-----EGICHSCGKTGHRARDCSTHVQSGGDLR 132
A +C Q C+NC GH+A +C E C++CGK GH ARDC D +
Sbjct: 64 AKDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDH-----ADEQ 118
Query: 133 LCNNCYKPGHIAADCTNDKACKNCRKTGHIARDCQ--NEPVCNLCNIAGHVARQC 185
C +C + GHI DCT K C C +TGH+A +C +E C C +GH+AR+C
Sbjct: 119 KCYSCGEFGHIQKDCTKVK-CYRCGETGHVAINCSKTSEVNCYRCGESGHLAREC 172
Score = 74.3 bits (181), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 75/139 (53%), Gaps = 19/139 (13%)
Query: 44 SFSQGNLCNNCKRPGHFAREC--PNVAVCNNCGLPGHIASECTTQAR-----CWNCREPG 96
S S ++C C GH A++C C NCG GHIA +C R C+NC +PG
Sbjct: 47 SSSLPDICYRCGESGHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPG 106
Query: 97 HMASNCH--NEGICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADC--TNDKA 152
H+A +C +E C+SCG+ GH +DC T V+ C C + GH+A +C T++
Sbjct: 107 HLARDCDHADEQKCYSCGEFGHIQKDC-TKVK-------CYRCGETGHVAINCSKTSEVN 158
Query: 153 CKNCRKTGHIARDCQNEPV 171
C C ++GH+AR+C E
Sbjct: 159 CYRCGESGHLARECTIEAT 177
Score = 60.8 bits (146), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 55/93 (59%), Gaps = 7/93 (7%)
Query: 39 RETRRSFSQGNLCNNCKRPGHFARECPNV--AVCNNCGLPGHIASECTTQARCWNCREPG 96
+E +R Q C NC +PGH AR+C + C +CG GHI +CT + +C+ C E G
Sbjct: 89 KEPKREREQ--CCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCT-KVKCYRCGETG 145
Query: 97 HMASNCH--NEGICHSCGKTGHRARDCSTHVQS 127
H+A NC +E C+ CG++GH AR+C+ +
Sbjct: 146 HVAINCSKTSEVNCYRCGESGHLARECTIEATA 178
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 68/180 (37%), Gaps = 63/180 (35%)
Query: 108 CHSCGKTGHRARDCST----------------------HVQSGGDLRLCNNCYKPGHIAA 145
C CG++GH AR+C T S +C C + GH+A
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAK 65
Query: 146 DC--TNDKACKNCRKTGHIARDCQN-----EPVCNLCNIAGHVARQCPKGDSLGERGGGG 198
DC D+AC NC + GHIA+DC+ E C C GH+AR C D
Sbjct: 66 DCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHAD--------- 116
Query: 199 GGERGGGGGGDGGGGGGRYVGYHDVICRSCNQMGHMSRDCVGPLIICRNCGGRGHMAYEC 258
+ C SC + GH+ +DC + C CG GH+A C
Sbjct: 117 -----------------------EQKCYSCGEFGHIQKDCTK--VKCYRCGETGHVAINC 151
>sp|O65639|CSP1_ARATH Cold shock protein 1 OS=Arabidopsis thaliana GN=CSP1 PE=2 SV=1
Length = 299
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 70/167 (41%), Gaps = 52/167 (31%)
Query: 51 CNNCKRPGHFARECPNVAV-------------CNNCGLPGHIASECTTQAR--------- 88
C NC GHFAR+C + C CG GH+A +CT ++
Sbjct: 134 CYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQKSVGNGDQRGAV 193
Query: 89 ------CWNCREPGHMASNCHNE-------------GICHSCGKTGHRARDCSTHVQSGG 129
C+ C + GH A +C + G C+SCG GH ARDC+T Q
Sbjct: 194 KGGNDGCYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDCATKRQP-- 251
Query: 130 DLRLCNNCYKPGHIAADCT--------NDKACKNCRKTGHIARDCQN 168
R C C GH+A DC ND AC C K GH AR+C +
Sbjct: 252 -SRGCYQCGGSGHLARDCDQRGSGGGGNDNACYKCGKEGHFARECSS 297
Score = 71.6 bits (174), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 84/220 (38%), Gaps = 77/220 (35%)
Query: 70 CNNCGLPGHIASEC-------------TTQARCWNCREPGHMASNCHNEGI--------- 107
C NCG GHI+ +C C+NC + GH A +C + G
Sbjct: 102 CYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDTGHFARDCTSAGNGDQRGATKG 161
Query: 108 ----CHSCGKTGHRARDCSTHVQSGGDLR--------LCNNCYKPGHIAADCTNDKA--- 152
C++CG GH ARDC+ GD R C C GH A DCT A
Sbjct: 162 GNDGCYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFARDCTQKVAAGN 221
Query: 153 ----------CKNCRKTGHIARDC----QNEPVCNLCNIAGHVARQCPKGDSLGERGGGG 198
C +C GHIARDC Q C C +GH+AR C
Sbjct: 222 VRSGGGGSGTCYSCGGVGHIARDCATKRQPSRGCYQCGGSGHLARDCD------------ 269
Query: 199 GGERGGGGGGDGGGGGGRYVGYHDVICRSCNQMGHMSRDC 238
+RG GGGG+ D C C + GH +R+C
Sbjct: 270 --QRGSGGGGN------------DNACYKCGKEGHFAREC 295
Score = 65.1 bits (157), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 78/202 (38%), Gaps = 65/202 (32%)
Query: 89 CWNCREPGHMASNCHNEGI-------------CHSCGKTGHRARDCSTHVQSGGDLRLCN 135
C+NC E GH++ +C G C++CG TGH ARDC++ GD R
Sbjct: 102 CYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDTGHFARDCTS--AGNGDQR--- 156
Query: 136 NCYKPGHIAADCTNDKACKNCRKTGHIARDCQNEPV---------------CNLCNIAGH 180
A + C C GH+ARDC + V C C GH
Sbjct: 157 --------GATKGGNDGCYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTCGDVGH 208
Query: 181 VARQCPKGDSLGERGGGGGGERGGGGGGDGGGGGGRYVGYHDVICRSCNQMGHMSRDCVG 240
AR C + + G GGGG C SC +GH++RDC
Sbjct: 209 FARDCTQKVAAGNVRSGGGGSG---------------------TCYSCGGVGHIARDCAT 247
Query: 241 ---PLIICRNCGGRGHMAYECP 259
P C CGG GH+A +C
Sbjct: 248 KRQPSRGCYQCGGSGHLARDCD 269
Score = 39.7 bits (91), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 60/154 (38%), Gaps = 40/154 (25%)
Query: 153 CKNCRKTGHIARDCQNEPV-------------CNLCNIAGHVARQCPKGDSLGERGGGGG 199
C NC + GHI++DC C C GH AR C + +RG G
Sbjct: 102 CYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDTGHFARDCTSAGNGDQRGATKG 161
Query: 200 GERGGGGGGDGG-----------GGG---GRYVGYHDVICRSCNQMGHMSRDCVGPLI-- 243
G G GD G G G G G +D C +C +GH +RDC +
Sbjct: 162 GNDGCYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDG-CYTCGDVGHFARDCTQKVAAG 220
Query: 244 ----------ICRNCGGRGHMAYECPSGRIADRG 267
C +CGG GH+A +C + R RG
Sbjct: 221 NVRSGGGGSGTCYSCGGVGHIARDCATKRQPSRG 254
>sp|O76743|GLH4_CAEEL ATP-dependent RNA helicase glh-4 OS=Caenorhabditis elegans GN=glh-4
PE=2 SV=2
Length = 1156
Score = 72.4 bits (176), Expect = 3e-12, Method: Composition-based stats.
Identities = 42/116 (36%), Positives = 54/116 (46%), Gaps = 18/116 (15%)
Query: 70 CNNCGLPGHIASEC----TTQARCWNCREPGHMASNCHN----EGICHSCGKTGHRARDC 121
C+NCG GHI+ EC + C NC + GH AS+C G C +CG GH A DC
Sbjct: 572 CHNCGEEGHISKECDKPKVPRFPCRNCEQLGHFASDCDQPRVPRGPCRNCGIEGHFAVDC 631
Query: 122 STHVQSGGDLRLCNNCYKPGHIAADCTNDKA-------CKNCRKTGHIARDCQNEP 170
G C NC + GH A DC N++ C+ C + GH +C P
Sbjct: 632 DQPKVPRGP---CRNCGQEGHFAKDCQNERVRMEPTEPCRRCAEEGHWGYECPTRP 684
Score = 70.5 bits (171), Expect = 1e-11, Method: Composition-based stats.
Identities = 42/113 (37%), Positives = 51/113 (45%), Gaps = 18/113 (15%)
Query: 89 CWNCREPGHMASNCHNEGI----CHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIA 144
C NC E GH++ C + C +C + GH A DC G C NC GH A
Sbjct: 572 CHNCGEEGHISKECDKPKVPRFPCRNCEQLGHFASDCDQPRVPRGP---CRNCGIEGHFA 628
Query: 145 ADCTNDKA----CKNCRKTGHIARDCQNEPV-------CNLCNIAGHVARQCP 186
DC K C+NC + GH A+DCQNE V C C GH +CP
Sbjct: 629 VDCDQPKVPRGPCRNCGQEGHFAKDCQNERVRMEPTEPCRRCAEEGHWGYECP 681
Score = 66.2 bits (160), Expect = 3e-10, Method: Composition-based stats.
Identities = 45/148 (30%), Positives = 57/148 (38%), Gaps = 54/148 (36%)
Query: 132 RLCNNCYKPGHIAADCTNDKA----CKNCRKTGHIARDCQNEPV----CNLCNIAGHVAR 183
R C+NC + GHI+ +C K C+NC + GH A DC V C C I GH A
Sbjct: 570 RGCHNCGEEGHISKECDKPKVPRFPCRNCEQLGHFASDCDQPRVPRGPCRNCGIEGHFAV 629
Query: 184 QC-----PKGDSLGERGGGGGGERGGGGGGDGGGGGGRYVGYHDVICRSCNQMGHMSRDC 238
C P+G CR+C Q GH ++DC
Sbjct: 630 DCDQPKVPRGP-----------------------------------CRNCGQEGHFAKDC 654
Query: 239 ------VGPLIICRNCGGRGHMAYECPS 260
+ P CR C GH YECP+
Sbjct: 655 QNERVRMEPTEPCRRCAEEGHWGYECPT 682
Score = 61.2 bits (147), Expect = 8e-09, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 43/88 (48%), Gaps = 15/88 (17%)
Query: 51 CNNCKRPGHFARECPNVAV----CNNCGLPGHIASEC----TTQARCWNCREPGHMASNC 102
C NC++ GHFA +C V C NCG+ GH A +C + C NC + GH A +C
Sbjct: 595 CRNCEQLGHFASDCDQPRVPRGPCRNCGIEGHFAVDCDQPKVPRGPCRNCGQEGHFAKDC 654
Query: 103 HNEGI-------CHSCGKTGHRARDCST 123
NE + C C + GH +C T
Sbjct: 655 QNERVRMEPTEPCRRCAEEGHWGYECPT 682
Score = 42.7 bits (99), Expect = 0.003, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 225 CRSCNQMGHMSRDCVGPLI---ICRNCGGRGHMAYECPSGRI 263
CR+C Q+GH + DC P + CRNCG GH A +C ++
Sbjct: 595 CRNCEQLGHFASDCDQPRVPRGPCRNCGIEGHFAVDCDQPKV 636
Score = 35.8 bits (81), Expect = 0.35, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 7/45 (15%)
Query: 51 CNNCKRPGHFARECPNVAV-------CNNCGLPGHIASECTTQAR 88
C NC + GHFA++C N V C C GH EC T+ +
Sbjct: 641 CRNCGQEGHFAKDCQNERVRMEPTEPCRRCAEEGHWGYECPTRPK 685
>sp|Q8T8R1|Y3800_DROME CCHC-type zinc finger protein CG3800 OS=Drosophila melanogaster
GN=CG3800 PE=1 SV=1
Length = 165
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 66/161 (40%), Gaps = 36/161 (22%)
Query: 45 FSQGNLCNNCKRPGHFARECP-------------------------------NVAVCNNC 73
S C C RPGHFAR+C N C C
Sbjct: 1 MSMSATCYKCNRPGHFARDCSLGGGGGPGGVGGGGGGGGGGMRGNDGGGMRRNREKCYKC 60
Query: 74 GLPGHIASECTTQA-RCWNCREPGHMASNCH--NEGICHSCGKTGHRARDCSTHVQSGGD 130
GH A C +A RC+ C GH++ +C + C+ C KTGH R+C V G
Sbjct: 61 NQFGHFARACPEEAERCYRCNGIGHISKDCTQADNPTCYRCNKTGHWVRNCPEAVNERGP 120
Query: 131 LRL-CNNCYKPGHIAADC-TNDKACKNCRKTGHIARDCQNE 169
+ C C + GHI+ +C K C C K+GH+ R+C +
Sbjct: 121 TNVSCYKCNRTGHISKNCPETSKTCYGCGKSGHLRRECDEK 161
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 68/180 (37%), Gaps = 53/180 (29%)
Query: 106 GICHSCGKTGHRARDCSTHVQSGG------------------------DLRLCNNCYKPG 141
C+ C + GH ARDCS G + C C + G
Sbjct: 5 ATCYKCNRPGHFARDCSLGGGGGPGGVGGGGGGGGGGMRGNDGGGMRRNREKCYKCNQFG 64
Query: 142 HIAADCTND-KACKNCRKTGHIARDCQ--NEPVCNLCNIAGHVARQCPKGDSLGERGGGG 198
H A C + + C C GHI++DC + P C CN GH R CP +++ ERG
Sbjct: 65 HFARACPEEAERCYRCNGIGHISKDCTQADNPTCYRCNKTGHWVRNCP--EAVNERGPT- 121
Query: 199 GGERGGGGGGDGGGGGGRYVGYHDVICRSCNQMGHMSRDCVGPLIICRNCGGRGHMAYEC 258
+V C CN+ GH+S++C C CG GH+ EC
Sbjct: 122 -----------------------NVSCYKCNRTGHISKNCPETSKTCYGCGKSGHLRREC 158
Score = 31.2 bits (69), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 225 CRSCNQMGHMSRDCVGPLIICRNCGGRGHMAYECPSG 261
C CNQ GH +R C C C G GH++ +C
Sbjct: 57 CYKCNQFGHFARACPEEAERCYRCNGIGHISKDCTQA 93
>sp|Q94C69|CSP3_ARATH Cold shock domain-containing protein 3 OS=Arabidopsis thaliana
GN=CSP3 PE=2 SV=1
Length = 301
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 76/217 (35%), Gaps = 67/217 (30%)
Query: 37 LRRETRRSFSQGNLCNNCKRPGHFARECP-----------------NVAVCNNCGLPGHI 79
L ++ S G C NC GH A++C C CG GH
Sbjct: 82 LNKKENSSRGSGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECYMCGDVGHF 141
Query: 80 ASECTTQAR------------CWNCREPGHMASNC----------------HNEGICHSC 111
A +C C++C E GH+A +C C+ C
Sbjct: 142 ARDCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDCRGGSGGNRYGGGGGRGSGGDGCYMC 201
Query: 112 GKTGHRARDC--STHVQSGGDLRLCNNCYKPGHIAADCTND---------KACKNCRKTG 160
G GH ARDC + GG C C GHIA CT+ +AC C TG
Sbjct: 202 GGVGHFARDCRQNGGGNVGGGGSTCYTCGGVGHIAKVCTSKIPSGGGGGGRACYECGGTG 261
Query: 161 HIARDCQNEPV-----------CNLCNIAGHVARQCP 186
H+ARDC C +C GH AR+C
Sbjct: 262 HLARDCDRRGSGSSGGGGGSNKCFICGKEGHFARECT 298
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 75/233 (32%), Gaps = 90/233 (38%)
Query: 89 CWNCREPGHMASNCHNEGI-----------------CHSCGKTGHRARDC-----STHVQ 126
C+NC E GHMA +C C+ CG GH ARDC
Sbjct: 96 CFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECYMCGDVGHFARDCRQSGGGNSGG 155
Query: 127 SGGDLRLCNNCYKPGHIAADC----------------TNDKACKNCRKTGHIARDCQN-- 168
GG R C +C + GH+A DC + C C GH ARDC+
Sbjct: 156 GGGGGRPCYSCGEVGHLAKDCRGGSGGNRYGGGGGRGSGGDGCYMCGGVGHFARDCRQNG 215
Query: 169 -------EPVCNLCNIAGHVARQC----PKGDSLGERGGGGGGERGGGGGGDGGGGGGRY 217
C C GH+A+ C P G G R
Sbjct: 216 GGNVGGGGSTCYTCGGVGHIAKVCTSKIPSGGGGGGRA---------------------- 253
Query: 218 VGYHDVICRSCNQMGHMSRDC----------VGPLIICRNCGGRGHMAYECPS 260
C C GH++RDC G C CG GH A EC S
Sbjct: 254 -------CYECGGTGHLARDCDRRGSGSSGGGGGSNKCFICGKEGHFARECTS 299
>sp|Q8WW36|ZCH13_HUMAN Zinc finger CCHC domain-containing protein 13 OS=Homo sapiens
GN=ZCCHC13 PE=2 SV=1
Length = 166
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 56/108 (51%), Gaps = 6/108 (5%)
Query: 84 TTQARCWNCREPGHMASNCHNEG-ICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGH 142
T C+ C E G A NC G IC++CG++GH A+DC + + C C + GH
Sbjct: 42 TLSYTCYCCGESGRNAKNCVLLGNICYNCGRSGHIAKDCKDPKRE--RRQHCYTCGRLGH 99
Query: 143 IAADC--TNDKACKNCRKTGHIARDCQNEPVCNLCNIAGHVARQCPKG 188
+A DC ++ C +C K GHI +DC + C C GHVA C K
Sbjct: 100 LARDCDRQKEQKCYSCGKLGHIQKDCA-QVKCYRCGEIGHVAINCSKA 146
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 53/101 (52%), Gaps = 8/101 (7%)
Query: 29 HSSYCDPPLRRETRRSFSQGNLCNNCKRPGHFARECPNVAV-----CNNCGLPGHIASEC 83
++ YC R + GN+C NC R GH A++C + C CG GH+A +C
Sbjct: 45 YTCYCCGESGRNAKNCVLLGNICYNCGRSGHIAKDCKDPKRERRQHCYTCGRLGHLARDC 104
Query: 84 TTQ--ARCWNCREPGHMASNCHNEGICHSCGKTGHRARDCS 122
Q +C++C + GH+ +C + C+ CG+ GH A +CS
Sbjct: 105 DRQKEQKCYSCGKLGHIQKDC-AQVKCYRCGEIGHVAINCS 144
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 53/114 (46%), Gaps = 16/114 (14%)
Query: 44 SFSQGNLCNNCKRPGHFARECPNVA-VCNNCGLPGHIASECTTQAR-----CWNCREPGH 97
S + C C G A+ C + +C NCG GHIA +C R C+ C GH
Sbjct: 40 STTLSYTCYCCGESGRNAKNCVLLGNICYNCGRSGHIAKDCKDPKRERRQHCYTCGRLGH 99
Query: 98 MASNC--HNEGICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADCTN 149
+A +C E C+SCGK GH +DC+ C C + GH+A +C+
Sbjct: 100 LARDCDRQKEQKCYSCGKLGHIQKDCAQ--------VKCYRCGEIGHVAINCSK 145
>sp|Q05313|GAG_FIVWO Gag polyprotein OS=Feline immunodeficiency virus (isolate Wo)
GN=gag PE=3 SV=1
Length = 450
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 29/44 (65%), Gaps = 6/44 (13%)
Query: 48 GNLCNNCKRPGHFARECPNVAVCNNCGLPGHIASECTTQARCWN 91
G +C NCKRPGH AR+C +V CN CG PGH+A A+CW
Sbjct: 374 GPVCFNCKRPGHLARQCRDVKKCNKCGKPGHLA------AKCWQ 411
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 59/139 (42%), Gaps = 33/139 (23%)
Query: 16 RSRSPRDRRFR----SRHSSYCD------------PPLRRETRRSFSQGNLCNNCKRP-G 58
+++SPR + R +SS+ D ++ ++S S N +CK+
Sbjct: 271 KAKSPRAVQLRQGAKEDYSSFIDRLFAQIDQEQNTAEVKLYLKQSLSIANANADCKKAMS 330
Query: 59 HFAREC---PNVAVCNNCGLPGH---IASECTTQAR----------CWNCREPGHMASNC 102
H E + C G PG+ + +E T+ + C+NC+ PGH+A C
Sbjct: 331 HLKPESTLEEKLRACQEIGFPGYKMQLLAEALTKVQVVQSKGPGPVCFNCKRPGHLARQC 390
Query: 103 HNEGICHSCGKTGHRARDC 121
+ C+ CGK GH A C
Sbjct: 391 RDVKKCNKCGKPGHLAAKC 409
>sp|P19027|GAG_FIVSD Gag polyprotein OS=Feline immunodeficiency virus (strain San Diego)
GN=gag PE=3 SV=1
Length = 450
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 29/44 (65%), Gaps = 6/44 (13%)
Query: 48 GNLCNNCKRPGHFARECPNVAVCNNCGLPGHIASECTTQARCWN 91
G +C NCK+PGH AR+C +V CN CG PGH+A A+CW
Sbjct: 374 GPVCFNCKKPGHLARQCRDVKKCNKCGKPGHLA------AKCWQ 411
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 67/160 (41%), Gaps = 30/160 (18%)
Query: 16 RSRSPRDRRFR----SRHSSYCDPPLRRETRRSFSQGNLCNNCKRPGHFARECPNVAVCN 71
+++SPR + R +SS+ D R F+Q + N + ++ ++A N
Sbjct: 271 KAKSPRAVQLRQGAKEDYSSFID--------RLFAQIDQEQNTAEVKLYLKQSLSIANAN 322
Query: 72 N--CGLPGHIASECTTQARCWNCRE---PGHMASNCHNEGICHSCGKTGHRARDCSTHVQ 126
H+ E T + + C+E PG+ + + + K VQ
Sbjct: 323 AECKKAMSHLKPESTLEEKLRACQEIGSPGY-----KMQLLAEALTKV--------QVVQ 369
Query: 127 SGGDLRLCNNCYKPGHIAADCTNDKACKNCRKTGHIARDC 166
S G +C NC KPGH+A C + K C C K GH+A C
Sbjct: 370 SKGSGPVCFNCKKPGHLARQCRDVKKCNKCGKPGHLAAKC 409
>sp|P16087|GAG_FIVPE Gag polyprotein OS=Feline immunodeficiency virus (isolate Petaluma)
GN=gag PE=3 SV=1
Length = 450
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 28/44 (63%), Gaps = 6/44 (13%)
Query: 48 GNLCNNCKRPGHFARECPNVAVCNNCGLPGHIASECTTQARCWN 91
G +C NCK+PGH AR+C V CN CG PGH+A A+CW
Sbjct: 374 GPVCFNCKKPGHLARQCREVKKCNKCGKPGHLA------AKCWQ 411
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 68/160 (42%), Gaps = 30/160 (18%)
Query: 16 RSRSPRDRRFR----SRHSSYCDPPLRRETRRSFSQGNLCNNCKRPGHFARECPNVAVCN 71
+++SPR + R +SS+ D R F+Q + N + ++ ++A N
Sbjct: 271 KAKSPRAVQLRQGAKEDYSSFID--------RLFAQIDQEQNTAEVKLYLKQSLSIANAN 322
Query: 72 -NCG-LPGHIASECTTQARCWNCRE---PGHMASNCHNEGICHSCGKTGHRARDCSTHVQ 126
+C H+ E T + + C+E PG+ + + + K VQ
Sbjct: 323 ADCKKAMSHLKPESTLEEKLRACQEIGSPGY-----KMQLLAEALTKV--------QVVQ 369
Query: 127 SGGDLRLCNNCYKPGHIAADCTNDKACKNCRKTGHIARDC 166
S G +C NC KPGH+A C K C C K GH+A C
Sbjct: 370 SKGSGPVCFNCKKPGHLARQCREVKKCNKCGKPGHLAAKC 409
>sp|A1L2T6|ZCHC7_XENLA Zinc finger CCHC domain-containing protein 7 OS=Xenopus laevis
GN=zcchc7 PE=2 SV=2
Length = 563
Score = 51.2 bits (121), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 56/137 (40%), Gaps = 26/137 (18%)
Query: 36 PLRRETRRSFSQGNLCNNCKRPGHFARECP---NVAVCNNCGLPGHIASECTTQARCWNC 92
PLRR R + +C NC + GH ++ CP + C CG GH + C ++ C NC
Sbjct: 252 PLRRSNRYYTDKNVVCRNCDKRGHLSKNCPVPKKLPACCLCGERGHYQNSCPSRY-CLNC 310
Query: 93 REPGHMASNC----HNEGICHSCGKTGHRARDCS-------THVQSG-----------GD 130
PGH C + CH C GH A C +++G D
Sbjct: 311 FLPGHFFKECIERAYWRKTCHRCSMPGHYADACPEIWRQYHLTIKAGPIKKPKSHSGQKD 370
Query: 131 LRLCNNCYKPGHIAADC 147
+ C NC K GH +C
Sbjct: 371 IVYCCNCAKKGHCIYEC 387
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 188 GDSLGERGGGGGGERGGGGGGDGGGG----GGRYVGYHDVICRSCNQMGHMSRDCVGP-- 241
D GERG G RY +V+CR+C++ GH+S++C P
Sbjct: 226 SDDEGERGAAWSISEKDVEAQIGNYTPLRRSNRYYTDKNVVCRNCDKRGHLSKNCPVPKK 285
Query: 242 LIICRNCGGRGHMAYECPS 260
L C CG RGH CPS
Sbjct: 286 LPACCLCGERGHYQNSCPS 304
Score = 31.2 bits (69), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 11/71 (15%)
Query: 119 RDCSTHVQSGGDLRLCNNCYKPGHIAADCTNDKACKNCRKTGHIARDC---QNEPVCNLC 175
+D + + LR N Y ++ C+NC K GH++++C + P C LC
Sbjct: 241 KDVEAQIGNYTPLRRSNRYYTDKNVV--------CRNCDKRGHLSKNCPVPKKLPACCLC 292
Query: 176 NIAGHVARQCP 186
GH CP
Sbjct: 293 GERGHYQNSCP 303
>sp|P31821|GAG_FIVT2 Gag polyprotein OS=Feline immunodeficiency virus (isolate TM2)
GN=gag PE=3 SV=1
Length = 449
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 77/196 (39%), Gaps = 38/196 (19%)
Query: 16 RSRSPRDRRFR----SRHSSYCDPPLRRETRRSFSQGNLCNNCKRPGHFARECPNVAVCN 71
+++SPR + + +SS+ D R F+Q + N + ++ ++A N
Sbjct: 271 KAKSPRAVQLKQGAKEDYSSFID--------RLFAQIDQEQNTAEVKLYLKQSLSIANAN 322
Query: 72 -NCG-LPGHIASECTTQARCWNCREPGHMASNCHNEGICHSCGKTGHRARDCSTHVQS-- 127
+C H+ E T + + C+E G S G + T VQ+
Sbjct: 323 PDCKRAMSHLKPESTLEEKLRACQEVG-------------SPGYKMQLLAEALTRVQTVQ 369
Query: 128 -GGDLRLCNNCYKPGHIAADCTNDKACKNCRKTGHIARDCQ--------NEPVCNLCNIA 178
G +C NC KPGH+A C K C NC K GH+A +C NE V
Sbjct: 370 TKGPRLVCFNCKKPGHLARQCKEAKRCNNCGKPGHLAANCWQGGRKTSGNEKVGRAAAPV 429
Query: 179 GHVARQCPKGDSLGER 194
V + P + E+
Sbjct: 430 NQVQQIVPSAPPMEEK 445
>sp|Q9P795|AIR1_SCHPO Protein air1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=air1 PE=1 SV=2
Length = 315
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 56/121 (46%), Gaps = 19/121 (15%)
Query: 46 SQGNLCNNCKRPGHFARECPNVAVCNNCG-LPGHIASECTTQARCWNCREPGHMASNCHN 104
S+ +C+NCK GH +++CP+V +C CG + HI+ C +C NC GH+A+ C
Sbjct: 86 SESIVCHNCKGNGHISKDCPHV-LCTTCGAIDDHISVRCPWTKKCMNCGLLGHIAARCSE 144
Query: 105 -----EGICHSCGKTGHRARDCST----HVQSGGDLRL--------CNNCYKPGHIAADC 147
+C +C H + C +V+ +R+ C NC H DC
Sbjct: 145 PRKRGPRVCRTCHTDTHTSSTCPLIWRYYVEKEHPVRIDVSEVRKFCYNCASDEHFGDDC 204
Query: 148 T 148
T
Sbjct: 205 T 205
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 40/87 (45%), Gaps = 16/87 (18%)
Query: 107 ICHSCGKTGHRARDCSTHVQSGGDLRLCNNC-YKPGHIAADCTNDKACKNCRKTGHIARD 165
+CH+C GH ++DC HV LC C HI+ C K C NC GHIA
Sbjct: 90 VCHNCKGNGHISKDC-PHV-------LCTTCGAIDDHISVRCPWTKKCMNCGLLGHIAAR 141
Query: 166 CQNEP------VCNLCNIAGHVARQCP 186
C +EP VC C+ H + CP
Sbjct: 142 C-SEPRKRGPRVCRTCHTDTHTSSTCP 167
Score = 35.8 bits (81), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 8/96 (8%)
Query: 168 NEPVCNLCNIAGHVARQCPKGDSLGERGGGGGGERGGGGGGDGGGGGGRYVGY---HDVI 224
++ + N ++ H + DS + + G D G RY G ++
Sbjct: 33 DQSITNSVSLEKHDFQGSDDHDSSTDLSDSTLEDVEGSEWADVSRG--RYFGSDPSESIV 90
Query: 225 CRSCNQMGHMSRDCVGPLIICRNCGG-RGHMAYECP 259
C +C GH+S+DC P ++C CG H++ CP
Sbjct: 91 CHNCKGNGHISKDC--PHVLCTTCGAIDDHISVRCP 124
Score = 34.7 bits (78), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 57/163 (34%), Gaps = 23/163 (14%)
Query: 47 QGNLCNNCKRPGHFARECPNVAVCNNCGLPGHIASECTTQARCWNC-REPGHMASNCHNE 105
+G+ + R +F + VC+NC GHI+ +C C C H++ C
Sbjct: 68 EGSEWADVSRGRYFGSDPSESIVCHNCKGNGHISKDC-PHVLCTTCGAIDDHISVRCPWT 126
Query: 106 GICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADC------------------ 147
C +CG GH A CS + G R+C C+ H ++ C
Sbjct: 127 KKCMNCGLLGHIAARCSEPRKRGP--RVCRTCHTDTHTSSTCPLIWRYYVEKEHPVRIDV 184
Query: 148 -TNDKACKNCRKTGHIARDCQNEPVCNLCNIAGHVARQCPKGD 189
K C NC H DC N CP G+
Sbjct: 185 SEVRKFCYNCASDEHFGDDCTLPSRSNYPESTAFCEANCPSGN 227
>sp|Q82851|POL_JEMBR Gag-Pol polyprotein OS=Jembrana disease virus GN=gag-pol PE=3 SV=1
Length = 1432
Score = 50.1 bits (118), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 122 STHVQSGGDLRLCNNCYKPGHIAADCTNDKACKNCRKTGHIARDCQNE 169
+ +V+ G+++ C C KPGHI DC N K C C K GH+ R+C+++
Sbjct: 358 AINVKGDGEVQRCYGCGKPGHIRRDCKNQK-CFKCGKPGHLQRNCKSK 404
Score = 45.8 bits (107), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 67 VAVCNNCGLPGHIASECTTQARCWNCREPGHMASNCHNE 105
V C CG PGHI +C Q +C+ C +PGH+ NC ++
Sbjct: 367 VQRCYGCGKPGHIRRDCKNQ-KCFKCGKPGHLQRNCKSK 404
Score = 45.4 bits (106), Expect = 4e-04, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 88 RCWNCREPGHMASNCHNEGICHSCGKTGHRARDCST 123
RC+ C +PGH+ +C N+ C CGK GH R+C +
Sbjct: 369 RCYGCGKPGHIRRDCKNQK-CFKCGKPGHLQRNCKS 403
Score = 43.1 bits (100), Expect = 0.002, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 51 CNNCKRPGHFARECPNVAVCNNCGLPGHIASECTTQAR 88
C C +PGH R+C N C CG PGH+ C ++ R
Sbjct: 370 CYGCGKPGHIRRDCKNQK-CFKCGKPGHLQRNCKSKNR 406
Score = 33.1 bits (74), Expect = 1.9, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 225 CRSCNQMGHMSRDCVGPLIICRNCGGRGHMAYECPS 260
C C + GH+ RDC C CG GH+ C S
Sbjct: 370 CYGCGKPGHIRRDCKNQK--CFKCGKPGHLQRNCKS 403
>sp|P03354|POL_RSVP Gag-Pro-Pol polyprotein OS=Rous sarcoma virus (strain Prague C)
GN=gag-pro-pol PE=1 SV=2
Length = 1603
Score = 49.7 bits (117), Expect = 2e-05, Method: Composition-based stats.
Identities = 35/96 (36%), Positives = 40/96 (41%), Gaps = 22/96 (22%)
Query: 116 HRARDCSTHVQSGGDLR-LCNNCYKPGHIAADCTNDKACKNCRKTGHIARDCQNEPVCNL 174
+R RD T SGG R LC C PGH A C + N R+ C L
Sbjct: 492 NRERDGQT--GSGGRARGLCYTCGSPGHYQAQCPKKRKSGNSRER------------CQL 537
Query: 175 CNIAGHVARQCPKGDSLGERGGGGGGERGGGGGGDG 210
CN GH A+QC K D G G+R G G G
Sbjct: 538 CNGMGHNAKQCRKRD-------GNQGQRPGKGLSSG 566
Score = 39.3 bits (90), Expect = 0.030, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 22/57 (38%)
Query: 91 NCREPGHMASNCHNEGICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADC 147
N G S G+C++CG GH C +SG C C GH A C
Sbjct: 492 NRERDGQTGSGGRARGLCYTCGSPGHYQAQCPKKRKSGNSRERCQLCNGMGHNAKQC 548
Score = 36.2 bits (82), Expect = 0.23, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 12/54 (22%)
Query: 68 AVCNNCGLPGHIASECTTQARCWNCREPGHMASNCHNEGICHSCGKTGHRARDC 121
+C CG PGH ++C + + N RE C C GH A+ C
Sbjct: 507 GLCYTCGSPGHYQAQCPKKRKSGNSRER------------CQLCNGMGHNAKQC 548
Score = 33.1 bits (74), Expect = 1.9, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 20/53 (37%), Gaps = 12/53 (22%)
Query: 50 LCNNCKRPGHFARECPNVAVCNNCGLPGHIASECTTQARCWNCREPGHMASNC 102
LC C PGH+ +CP N ++ RC C GH A C
Sbjct: 508 LCYTCGSPGHYQAQCPKKRKSGN------------SRERCQLCNGMGHNAKQC 548
Score = 32.7 bits (73), Expect = 3.2, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 29/87 (33%), Gaps = 27/87 (31%)
Query: 152 ACKNCRKTGHIARDCQNEPVCNLCNIAGHVARQCPKGDSLGERGGGGGGERGGGGGGDGG 211
A N + G + +C C GH QCPK +R G ER
Sbjct: 489 AVVNRERDGQTGSGGRARGLCYTCGSPGHYQAQCPK-----KRKSGNSRER--------- 534
Query: 212 GGGGRYVGYHDVICRSCNQMGHMSRDC 238
C+ CN MGH ++ C
Sbjct: 535 -------------CQLCNGMGHNAKQC 548
>sp|Q79666|POL_HV1MV Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group O
(isolate MVP5180) GN=gag-pol PE=3 SV=3
Length = 1446
Score = 48.5 bits (114), Expect = 5e-05, Method: Composition-based stats.
Identities = 33/92 (35%), Positives = 41/92 (44%), Gaps = 9/92 (9%)
Query: 134 CNNCYKPGHIAADC--TNDKACKNCRKTGHIARDCQNEPVCN----LCNIAGHVARQ-CP 186
C NC K GHIA +C + C C + GH +DC+N N + GH ARQ C
Sbjct: 396 CFNCGKEGHIAKNCRAPRKRGCWKCGQEGHQMKDCKNGRQANFFREVLASGGHEARQLCA 455
Query: 187 KGDSLGERGGGGGGERGGGGGGDGGGGGGRYV 218
+ GGG E G + GG GR V
Sbjct: 456 ETSVPISPTNGGGSE--GTRESESEGGSGRAV 485
Score = 42.4 bits (98), Expect = 0.004, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 70 CNNCGLPGHIASECTTQAR--CWNCREPGHMASNCHN 104
C NCG GHIA C + CW C + GH +C N
Sbjct: 396 CFNCGKEGHIAKNCRAPRKRGCWKCGQEGHQMKDCKN 432
Score = 42.0 bits (97), Expect = 0.004, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 88 RCWNCREPGHMASNCH--NEGICHSCGKTGHRARDCSTHVQS 127
+C+NC + GH+A NC + C CG+ GH+ +DC Q+
Sbjct: 395 KCFNCGKEGHIAKNCRAPRKRGCWKCGQEGHQMKDCKNGRQA 436
Score = 37.4 bits (85), Expect = 0.10, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 225 CRSCNQMGHMSRDCVGPLII-CRNCGGRGHMAYECPSGRIAD 265
C +C + GH++++C P C CG GH +C +GR A+
Sbjct: 396 CFNCGKEGHIAKNCRAPRKRGCWKCGQEGHQMKDCKNGRQAN 437
Score = 33.9 bits (76), Expect = 1.3, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 51 CNNCKRPGHFAREC--PNVAVCNNCGLPGHIASEC 83
C NC + GH A+ C P C CG GH +C
Sbjct: 396 CFNCGKEGHIAKNCRAPRKRGCWKCGQEGHQMKDC 430
>sp|Q1A267|POL_SIVMB Gag-Pol polyprotein OS=Simian immunodeficiency virus (isolate MB66)
GN=gag-pol PE=3 SV=4
Length = 1438
Score = 48.5 bits (114), Expect = 5e-05, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
Query: 39 RETRRSFSQGNLCNNCKRPGHFARECPNVAVCNNCGLPGHIASECTTQAR--CWNCREPG 96
R + SQ N+ KR + + C NCG GHIA C R CW C + G
Sbjct: 359 RVLAEAMSQAQHSNDAKRQFKGPKR---IVKCFNCGKEGHIARNCKAPRRKGCWKCGQEG 415
Query: 97 HMASNCHNE 105
H NC NE
Sbjct: 416 HQMRNCTNE 424
Score = 41.6 bits (96), Expect = 0.006, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 108 CHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADCTNDKACKNCRKT 159
C +CGK GH AR+C + G C C + GH +CTN++ R+T
Sbjct: 387 CFNCGKEGHIARNCKAPRRKG-----CWKCGQEGHQMRNCTNERQANFFRET 433
Score = 41.6 bits (96), Expect = 0.007, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 134 CNNCYKPGHIAADCT--NDKACKNCRKTGHIARDCQNEPVCNL 174
C NC K GHIA +C K C C + GH R+C NE N
Sbjct: 387 CFNCGKEGHIARNCKAPRRKGCWKCGQEGHQMRNCTNERQANF 429
Score = 37.4 bits (85), Expect = 0.12, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 51 CNNCKRPGHFAREC--PNVAVCNNCGLPGHIASECTTQARCWNCRE 94
C NC + GH AR C P C CG GH CT + + RE
Sbjct: 387 CFNCGKEGHIARNCKAPRRKGCWKCGQEGHQMRNCTNERQANFFRE 432
Score = 35.4 bits (80), Expect = 0.40, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 223 VICRSCNQMGHMSRDCVGPLII-CRNCGGRGHMAYECPSGRIAD 265
V C +C + GH++R+C P C CG GH C + R A+
Sbjct: 385 VKCFNCGKEGHIARNCKAPRRKGCWKCGQEGHQMRNCTNERQAN 428
Score = 35.4 bits (80), Expect = 0.48, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 153 CKNCRKTGHIARDCQ--NEPVCNLCNIAGHVARQC 185
C NC K GHIAR+C+ C C GH R C
Sbjct: 387 CFNCGKEGHIARNCKAPRRKGCWKCGQEGHQMRNC 421
>sp|Q9HFF2|YL92_SCHPO Uncharacterized protein C683.02c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC683.02c PE=4 SV=1
Length = 218
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 54/117 (46%), Gaps = 21/117 (17%)
Query: 22 DRRFRSRHSSYCDPPLRRETRRSFSQGNLCNNCKRPGHFARECP----NVAVCNNCGLPG 77
D R + + S Y LRR +R+ + C C++ GH ++CP NV++C CG
Sbjct: 54 DERQKKKRSEY--RRLRRINQRN--RDKFCFACRQQGHIVQDCPEAKDNVSICFRCGSKE 109
Query: 78 HIASECTTQ-----ARCWNCREPGHMASNCHNE--------GICHSCGKTGHRARDC 121
H + C+ + A+C+ C E GH++ C G C C H A+DC
Sbjct: 110 HSLNACSKKGPLKFAKCFICHENGHLSGQCEQNPKGLYPKGGCCKFCSSVHHLAKDC 166
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 18/92 (19%)
Query: 89 CWNCREPGHMASNC----HNEGICHSCGKTGHRARDCSTHVQSGGDLRL--CNNCYKPGH 142
C+ CR+ GH+ +C N IC CG H CS G L+ C C++ GH
Sbjct: 79 CFACRQQGHIVQDCPEAKDNVSICFRCGSKEHSLNACS----KKGPLKFAKCFICHENGH 134
Query: 143 IAADCTNDKA--------CKNCRKTGHIARDC 166
++ C + CK C H+A+DC
Sbjct: 135 LSGQCEQNPKGLYPKGGCCKFCSSVHHLAKDC 166
>sp|O92956|POL_RSVSB Gag-Pro-Pol polyprotein OS=Rous sarcoma virus (strain
Schmidt-Ruppin B) GN=gag-pro-pol PE=1 SV=2
Length = 1603
Score = 47.8 bits (112), Expect = 9e-05, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 39/85 (45%), Gaps = 16/85 (18%)
Query: 116 HRARDCSTHVQSGGDLR-LCNNCYKPGHIAADCTNDKACKNCRKTGHIARDCQNEPVCNL 174
+R RD T SGG R LC C PGH A C + N R+ C L
Sbjct: 492 NRERDGQT--GSGGRARRLCYTCGSPGHYQAQCPKKRKSGNSRER------------CQL 537
Query: 175 CNIAGHVARQCPKGDS-LGERGGGG 198
C+ GH A+QC + DS G+R G G
Sbjct: 538 CDGMGHNAKQCRRRDSNQGQRPGRG 562
Score = 36.2 bits (82), Expect = 0.28, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 12/53 (22%)
Query: 69 VCNNCGLPGHIASECTTQARCWNCREPGHMASNCHNEGICHSCGKTGHRARDC 121
+C CG PGH ++C + + N RE C C GH A+ C
Sbjct: 508 LCYTCGSPGHYQAQCPKKRKSGNSRER------------CQLCDGMGHNAKQC 548
Score = 35.8 bits (81), Expect = 0.34, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 21/57 (36%)
Query: 91 NCREPGHMASNCHNEGICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADC 147
N G S +C++CG GH C +SG C C GH A C
Sbjct: 492 NRERDGQTGSGGRARRLCYTCGSPGHYQAQCPKKRKSGNSRERCQLCDGMGHNAKQC 548
Score = 32.7 bits (73), Expect = 2.5, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 20/53 (37%), Gaps = 12/53 (22%)
Query: 50 LCNNCKRPGHFARECPNVAVCNNCGLPGHIASECTTQARCWNCREPGHMASNC 102
LC C PGH+ +CP N ++ RC C GH A C
Sbjct: 508 LCYTCGSPGHYQAQCPKKRKSGN------------SRERCQLCDGMGHNAKQC 548
>sp|Q04095|POL_RSVSA Gag-Pro-Pol polyprotein OS=Avian leukosis virus RSA GN=gag-pro-pol
PE=3 SV=2
Length = 1603
Score = 47.0 bits (110), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/96 (34%), Positives = 40/96 (41%), Gaps = 22/96 (22%)
Query: 116 HRARDCSTHVQSGGDLR-LCNNCYKPGHIAADCTNDKACKNCRKTGHIARDCQNEPVCNL 174
+R RD T SGG R LC C PGH A C + N R+ C L
Sbjct: 492 NRERDGQT--GSGGRARGLCYTCGSPGHYQAQCPKKRKSGNSRER------------CQL 537
Query: 175 CNIAGHVARQCPKGDSLGERGGGGGGERGGGGGGDG 210
C+ GH A+QC + D G G+R G G G
Sbjct: 538 CDGMGHNAKQCRRRD-------GNQGQRPGKGLSSG 566
Score = 39.3 bits (90), Expect = 0.034, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 22/57 (38%)
Query: 91 NCREPGHMASNCHNEGICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADC 147
N G S G+C++CG GH C +SG C C GH A C
Sbjct: 492 NRERDGQTGSGGRARGLCYTCGSPGHYQAQCPKKRKSGNSRERCQLCDGMGHNAKQC 548
Score = 36.2 bits (82), Expect = 0.25, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 12/54 (22%)
Query: 68 AVCNNCGLPGHIASECTTQARCWNCREPGHMASNCHNEGICHSCGKTGHRARDC 121
+C CG PGH ++C + + N RE C C GH A+ C
Sbjct: 507 GLCYTCGSPGHYQAQCPKKRKSGNSRER------------CQLCDGMGHNAKQC 548
Score = 33.1 bits (74), Expect = 2.4, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 20/53 (37%), Gaps = 12/53 (22%)
Query: 50 LCNNCKRPGHFARECPNVAVCNNCGLPGHIASECTTQARCWNCREPGHMASNC 102
LC C PGH+ +CP N ++ RC C GH A C
Sbjct: 508 LCYTCGSPGHYQAQCPKKRKSGN------------SRERCQLCDGMGHNAKQC 548
>sp|O91080|POL_HV1YF Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group N
(isolate YBF30) GN=gag-pol PE=3 SV=3
Length = 1449
Score = 47.0 bits (110), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 70 CNNCGLPGHIASECTTQAR--CWNCREPGHMASNCHNEG 106
C NCG GH+A C R CW C + GH +C NEG
Sbjct: 395 CFNCGKEGHLARNCKAPRRGGCWKCGQEGHQMKDCKNEG 433
Score = 44.3 bits (103), Expect = 0.001, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 88 RCWNCREPGHMASNCH--NEGICHSCGKTGHRARDC 121
+C+NC + GH+A NC G C CG+ GH+ +DC
Sbjct: 394 KCFNCGKEGHLARNCKAPRRGGCWKCGQEGHQMKDC 429
Score = 39.7 bits (91), Expect = 0.022, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 134 CNNCYKPGHIAADCTNDK--ACKNCRKTGHIARDCQNE 169
C NC K GH+A +C + C C + GH +DC+NE
Sbjct: 395 CFNCGKEGHLARNCKAPRRGGCWKCGQEGHQMKDCKNE 432
Score = 39.3 bits (90), Expect = 0.030, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Query: 108 CHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADCTND 150
C +CGK GH AR+C + G C C + GH DC N+
Sbjct: 395 CFNCGKEGHLARNCKAPRRGG-----CWKCGQEGHQMKDCKNE 432
Score = 33.5 bits (75), Expect = 1.7, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 225 CRSCNQMGHMSRDCVGPLI-ICRNCGGRGHMAYEC 258
C +C + GH++R+C P C CG GH +C
Sbjct: 395 CFNCGKEGHLARNCKAPRRGGCWKCGQEGHQMKDC 429
Score = 32.3 bits (72), Expect = 4.0, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 153 CKNCRKTGHIARDCQ--NEPVCNLCNIAGHVARQC 185
C NC K GH+AR+C+ C C GH + C
Sbjct: 395 CFNCGKEGHLARNCKAPRRGGCWKCGQEGHQMKDC 429
>sp|Q9IDV9|POL_HV1YB Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group N
(isolate YBF106) GN=gag-pol PE=3 SV=3
Length = 1449
Score = 47.0 bits (110), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 70 CNNCGLPGHIASECTTQAR--CWNCREPGHMASNCHNEG 106
C NCG GH+A C R CW C + GH +C NEG
Sbjct: 394 CFNCGKEGHLARNCKAPRRRGCWKCGQEGHQMKDCKNEG 432
Score = 42.4 bits (98), Expect = 0.004, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 108 CHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADCTNDKACKNCRK 158
C +CGK GH AR+C + G C C + GH DC N+ N RK
Sbjct: 394 CFNCGKEGHLARNCKAPRRRG-----CWKCGQEGHQMKDCKNEGXQANFRK 439
Score = 41.2 bits (95), Expect = 0.009, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
Query: 88 RCWNCREPGHMASNC---HNEGICHSCGKTGHRARDC 121
+C+NC + GH+A NC G C CG+ GH+ +DC
Sbjct: 393 KCFNCGKEGHLARNCKAPRRRG-CWKCGQEGHQMKDC 428
Score = 41.2 bits (95), Expect = 0.009, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 33/80 (41%), Gaps = 18/80 (22%)
Query: 108 CHSCGKTGHRAR-----------DCSTHVQSGGDLRL-----CNNCYKPGHIAADCT--N 149
C G H+AR S VQ G + C NC K GH+A +C
Sbjct: 352 CQGVGGPAHKARVLAEAMAQAQTATSVFVQRGNFKGIRKTIKCFNCGKEGHLARNCKAPR 411
Query: 150 DKACKNCRKTGHIARDCQNE 169
+ C C + GH +DC+NE
Sbjct: 412 RRGCWKCGQEGHQMKDCKNE 431
Score = 34.7 bits (78), Expect = 0.74, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 215 GRYVGYHDVI-CRSCNQMGHMSRDCVGPLII-CRNCGGRGHMAYEC 258
G + G I C +C + GH++R+C P C CG GH +C
Sbjct: 383 GNFKGIRKTIKCFNCGKEGHLARNCKAPRRRGCWKCGQEGHQMKDC 428
Score = 32.3 bits (72), Expect = 4.0, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 153 CKNCRKTGHIARDCQ--NEPVCNLCNIAGHVARQC 185
C NC K GH+AR+C+ C C GH + C
Sbjct: 394 CFNCGKEGHLARNCKAPRRRGCWKCGQEGHQMKDC 428
>sp|Q9QBZ9|POL_HV197 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype K (isolate 97ZR-EQTB11) GN=gag-pol PE=3 SV=2
Length = 1429
Score = 46.6 bits (109), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 24/80 (30%)
Query: 67 VAVCNNCGLPGHIA-------SECTTQA---------------RCWNCREPGHMASNCH- 103
+ C G PGH A S+ T A +C+NC + GH+A NC
Sbjct: 343 MTACQGVGGPGHKARVLAEAMSQVTNSAVMMQRGNFKGQRRIIKCFNCGKEGHLARNCRA 402
Query: 104 -NEGICHSCGKTGHRARDCS 122
+ C CGK GH+ +DCS
Sbjct: 403 PRKKGCWKCGKEGHQMKDCS 422
Score = 39.7 bits (91), Expect = 0.021, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 108 CHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADCTNDKA 152
C +CGK GH AR+C + G C C K GH DC+ +A
Sbjct: 387 CFNCGKEGHLARNCRAPRKKG-----CWKCGKEGHQMKDCSERQA 426
Score = 36.2 bits (82), Expect = 0.24, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 51 CNNCKRPGHFAREC--PNVAVCNNCGLPGHIASECTTQ 86
C NC + GH AR C P C CG GH +C+ +
Sbjct: 387 CFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCSER 424
Score = 35.4 bits (80), Expect = 0.38, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 215 GRYVGYHDVI-CRSCNQMGHMSRDCVGPLII-CRNCGGRGHMAYEC 258
G + G +I C +C + GH++R+C P C CG GH +C
Sbjct: 376 GNFKGQRRIIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDC 421
Score = 33.5 bits (75), Expect = 1.9, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 12/83 (14%)
Query: 108 CHSCGKTGHRAR---DCSTHVQSGGDLRLCNNCYKPGHIAADCTNDKACKNCRKTGHIAR 164
C G GH+AR + + V + + N I C NC K GH+AR
Sbjct: 346 CQGVGGPGHKARVLAEAMSQVTNSAVMMQRGNFKGQRRIIK-------CFNCGKEGHLAR 398
Query: 165 DCQ--NEPVCNLCNIAGHVARQC 185
+C+ + C C GH + C
Sbjct: 399 NCRAPRKKGCWKCGKEGHQMKDC 421
>sp|P05959|POL_HV1RH Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate RF/HAT3) GN=gag-pol PE=1 SV=3
Length = 1436
Score = 46.6 bits (109), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 58 GHFARECPNVAVCNNCGLPGHIASECTTQAR--CWNCREPGHMASNCHNEG 106
G+F R+ + C NCG GHIA C + CW C + GH +C NEG
Sbjct: 381 GNF-RDQRKIVKCFNCGKVGHIAKNCRAPRKKGCWKCGKEGHQMKDCTNEG 430
Score = 44.7 bits (104), Expect = 7e-04, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 34/80 (42%), Gaps = 18/80 (22%)
Query: 108 CHSCGKTGHRAR----------DCSTHVQSGGDLR------LCNNCYKPGHIAADC--TN 149
C G H+AR + +T + G+ R C NC K GHIA +C
Sbjct: 350 CQGVGGPSHKARILAEAMSQVTNSATIMLQKGNFRDQRKIVKCFNCGKVGHIAKNCRAPR 409
Query: 150 DKACKNCRKTGHIARDCQNE 169
K C C K GH +DC NE
Sbjct: 410 KKGCWKCGKEGHQMKDCTNE 429
Score = 44.7 bits (104), Expect = 8e-04, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 88 RCWNCREPGHMASNCH--NEGICHSCGKTGHRARDCSTHVQSGGDLR 132
+C+NC + GH+A NC + C CGK GH+ +DC+ + LR
Sbjct: 391 KCFNCGKVGHIAKNCRAPRKKGCWKCGKEGHQMKDCTNEGRQANFLR 437
Score = 38.5 bits (88), Expect = 0.046, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 51 CNNCKRPGHFAREC--PNVAVCNNCGLPGHIASECTTQARCWN 91
C NC + GH A+ C P C CG GH +CT + R N
Sbjct: 392 CFNCGKVGHIAKNCRAPRKKGCWKCGKEGHQMKDCTNEGRQAN 434
Score = 34.7 bits (78), Expect = 0.71, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 223 VICRSCNQMGHMSRDCVGPLII-CRNCGGRGHMAYECPS-GRIAD 265
V C +C ++GH++++C P C CG GH +C + GR A+
Sbjct: 390 VKCFNCGKVGHIAKNCRAPRKKGCWKCGKEGHQMKDCTNEGRQAN 434
>sp|P19560|POL_BIV29 Gag-Pol polyprotein OS=Bovine immunodeficiency virus (strain R29)
GN=gag-pol PE=1 SV=2
Length = 1475
Score = 46.2 bits (108), Expect = 3e-04, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 88 RCWNCREPGHMASNCHNEGICHSCGKTGHRARDCST 123
RC+ C + GH+ NC + C+ CGK GH+AR+C +
Sbjct: 404 RCYGCGKTGHLKRNCKQQK-CYHCGKPGHQARNCRS 438
Score = 42.4 bits (98), Expect = 0.004, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 70 CNNCGLPGHIASECTTQARCWNCREPGHMASNCHNE 105
C CG GH+ C Q +C++C +PGH A NC ++
Sbjct: 405 CYGCGKTGHLKRNCKQQ-KCYHCGKPGHQARNCRSK 439
Score = 40.8 bits (94), Expect = 0.011, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 8/40 (20%)
Query: 108 CHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADC 147
C+ CGKTGH R+C + C +C KPGH A +C
Sbjct: 405 CYGCGKTGHLKRNCKQ--------QKCYHCGKPGHQARNC 436
Score = 40.0 bits (92), Expect = 0.019, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 130 DLRLCNNCYKPGHIAADCTNDKACKNCRKTGHIARDCQNE 169
D R C C K GH+ +C K C +C K GH AR+C+++
Sbjct: 401 DGRRCYGCGKTGHLKRNCKQQK-CYHCGKPGHQARNCRSK 439
Score = 38.9 bits (89), Expect = 0.035, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 48 GNLCNNCKRPGHFARECPNVAVCNNCGLPGHIASECTTQAR 88
G C C + GH R C C +CG PGH A C ++ R
Sbjct: 402 GRRCYGCGKTGHLKRNCKQQK-CYHCGKPGHQARNCRSKNR 441
Score = 38.1 bits (87), Expect = 0.066, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 151 KACKNCRKTGHIARDCQNEPVCNLCNIAGHVARQC 185
+ C C KTGH+ R+C+ + C C GH AR C
Sbjct: 403 RRCYGCGKTGHLKRNCKQQK-CYHCGKPGHQARNC 436
Score = 33.5 bits (75), Expect = 1.7, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 225 CRSCNQMGHMSRDCVGPLIICRNCGGRGHMAYECPS 260
C C + GH+ R+C C +CG GH A C S
Sbjct: 405 CYGCGKTGHLKRNCKQQK--CYHCGKPGHQARNCRS 438
>sp|P23425|GAG_VILV2 Gag polyprotein OS=Maedi visna virus (strain 1514 / clone LV1-1KS2)
GN=gag PE=3 SV=1
Length = 442
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 27/45 (60%)
Query: 88 RCWNCREPGHMASNCHNEGICHSCGKTGHRARDCSTHVQSGGDLR 132
+C+NC +PGH+A C ICH CGK GH +DC Q G + R
Sbjct: 386 KCYNCGKPGHLARQCRQGIICHHCGKRGHMQKDCRQKKQQGNNRR 430
Score = 36.6 bits (83), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 51 CNNCKRPGHFARECPNVAVCNNCGLPGHIASEC 83
C NC +PGH AR+C +C++CG GH+ +C
Sbjct: 387 CYNCGKPGHLARQCRQGIICHHCGKRGHMQKDC 419
Score = 34.7 bits (78), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 134 CNNCYKPGHIAADCTNDKACKNCRKTGHIARDC 166
C NC KPGH+A C C +C K GH+ +DC
Sbjct: 387 CYNCGKPGHLARQCRQGIICHHCGKRGHMQKDC 419
Score = 32.0 bits (71), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%)
Query: 127 SGGDLRLCNNCYKPGHIAADCTNDKACKNCRKTGHIARDCQNEPVCNLCNIAGHVARQC 185
G ++L +P A ++ C NC K GH+AR C+ +C+ C GH+ + C
Sbjct: 361 EGFKMQLLAQALRPQGKAGHKGVNQKCYNCGKPGHLARQCRQGIICHHCGKRGHMQKDC 419
Score = 31.2 bits (69), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 225 CRSCNQMGHMSRDCVGPLIICRNCGGRGHMAYEC 258
C +C + GH++R C IIC +CG RGHM +C
Sbjct: 387 CYNCGKPGHLARQCRQG-IICHHCGKRGHMQKDC 419
>sp|P35955|GAG_VILVK Gag polyprotein OS=Maedi visna virus (strain KV1772) GN=gag PE=3
SV=1
Length = 442
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 27/45 (60%)
Query: 88 RCWNCREPGHMASNCHNEGICHSCGKTGHRARDCSTHVQSGGDLR 132
+C+NC +PGH+A C ICH CGK GH +DC Q G + R
Sbjct: 386 KCYNCGKPGHLARQCRQGIICHHCGKRGHMQKDCRQKKQQGNNRR 430
Score = 36.6 bits (83), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 51 CNNCKRPGHFARECPNVAVCNNCGLPGHIASEC 83
C NC +PGH AR+C +C++CG GH+ +C
Sbjct: 387 CYNCGKPGHLARQCRQGIICHHCGKRGHMQKDC 419
Score = 34.7 bits (78), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 134 CNNCYKPGHIAADCTNDKACKNCRKTGHIARDC 166
C NC KPGH+A C C +C K GH+ +DC
Sbjct: 387 CYNCGKPGHLARQCRQGIICHHCGKRGHMQKDC 419
Score = 32.7 bits (73), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%)
Query: 127 SGGDLRLCNNCYKPGHIAADCTNDKACKNCRKTGHIARDCQNEPVCNLCNIAGHVARQC 185
G ++L +P A ++ C NC K GH+AR C+ +C+ C GH+ + C
Sbjct: 361 EGFKMQLLAQALRPQGKAGQKGVNQKCYNCGKPGHLARQCRQGIICHHCGKRGHMQKDC 419
Score = 31.2 bits (69), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 225 CRSCNQMGHMSRDCVGPLIICRNCGGRGHMAYEC 258
C +C + GH++R C IIC +CG RGHM +C
Sbjct: 387 CYNCGKPGHLARQCRQG-IICHHCGKRGHMQKDC 419
>sp|P23424|GAG_VILV1 Gag polyprotein OS=Maedi visna virus (strain 1514 / clone LV1-1KS1)
GN=gag PE=3 SV=1
Length = 442
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 27/45 (60%)
Query: 88 RCWNCREPGHMASNCHNEGICHSCGKTGHRARDCSTHVQSGGDLR 132
+C+NC +PGH+A C ICH CGK GH +DC Q G + R
Sbjct: 386 KCYNCGKPGHLARQCRQGIICHHCGKRGHMQKDCRQKKQQGNNRR 430
Score = 36.6 bits (83), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 51 CNNCKRPGHFARECPNVAVCNNCGLPGHIASEC 83
C NC +PGH AR+C +C++CG GH+ +C
Sbjct: 387 CYNCGKPGHLARQCRQGIICHHCGKRGHMQKDC 419
Score = 34.7 bits (78), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 134 CNNCYKPGHIAADCTNDKACKNCRKTGHIARDC 166
C NC KPGH+A C C +C K GH+ +DC
Sbjct: 387 CYNCGKPGHLARQCRQGIICHHCGKRGHMQKDC 419
Score = 32.0 bits (71), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%)
Query: 127 SGGDLRLCNNCYKPGHIAADCTNDKACKNCRKTGHIARDCQNEPVCNLCNIAGHVARQC 185
G ++L +P A ++ C NC K GH+AR C+ +C+ C GH+ + C
Sbjct: 361 EGFKMQLLAQALRPQGKAGHKGVNQKCYNCGKPGHLARQCRQGIICHHCGKRGHMQKDC 419
Score = 31.2 bits (69), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 225 CRSCNQMGHMSRDCVGPLIICRNCGGRGHMAYEC 258
C +C + GH++R C IIC +CG RGHM +C
Sbjct: 387 CYNCGKPGHLARQCRQG-IICHHCGKRGHMQKDC 419
>sp|P03352|GAG_VILV Gag polyprotein OS=Maedi visna virus (strain 1514) GN=gag PE=3 SV=1
Length = 442
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 27/45 (60%)
Query: 88 RCWNCREPGHMASNCHNEGICHSCGKTGHRARDCSTHVQSGGDLR 132
+C+NC +PGH+A C ICH CGK GH +DC Q G + R
Sbjct: 386 KCYNCGKPGHLARQCRQGIICHHCGKRGHMQKDCRQKKQQGNNRR 430
Score = 36.6 bits (83), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 51 CNNCKRPGHFARECPNVAVCNNCGLPGHIASEC 83
C NC +PGH AR+C +C++CG GH+ +C
Sbjct: 387 CYNCGKPGHLARQCRQGIICHHCGKRGHMQKDC 419
Score = 34.7 bits (78), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 134 CNNCYKPGHIAADCTNDKACKNCRKTGHIARDC 166
C NC KPGH+A C C +C K GH+ +DC
Sbjct: 387 CYNCGKPGHLARQCRQGIICHHCGKRGHMQKDC 419
Score = 32.0 bits (71), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%)
Query: 127 SGGDLRLCNNCYKPGHIAADCTNDKACKNCRKTGHIARDCQNEPVCNLCNIAGHVARQC 185
G ++L +P A ++ C NC K GH+AR C+ +C+ C GH+ + C
Sbjct: 361 EGFKMQLLAQALRPQGKAGHKGVNQKCYNCGKPGHLARQCRQGIICHHCGKRGHMQKDC 419
Score = 31.2 bits (69), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 225 CRSCNQMGHMSRDCVGPLIICRNCGGRGHMAYEC 258
C +C + GH++R C IIC +CG RGHM +C
Sbjct: 387 CYNCGKPGHLARQCRQG-IICHHCGKRGHMQKDC 419
>sp|P24740|POL_HV1U4 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype A (isolate U455) GN=gag-pol PE=1 SV=3
Length = 1428
Score = 45.8 bits (107), Expect = 3e-04, Method: Composition-based stats.
Identities = 33/130 (25%), Positives = 51/130 (39%), Gaps = 31/130 (23%)
Query: 22 DRRFRSRHSSYCDPPLRRETRRSFSQGNLCNNCKR------PGHFARECPNVAVCNNCGL 75
DR F++ + ++ + N +CK PG E + C G
Sbjct: 294 DRFFKTLRAEQATQDVKNWMTETLLVQNANPDCKSILRALGPGATLEEM--MTACQGVGG 351
Query: 76 PGHIA---SECTTQA------------------RCWNCREPGHMASNCH--NEGICHSCG 112
PGH A +E +Q +C+NC + GH+A NC + C CG
Sbjct: 352 PGHKARVLAEAMSQVQQTSIMMQRGNFRGPRRIKCFNCGKEGHLAKNCRAPRKKGCWKCG 411
Query: 113 KTGHRARDCS 122
K GH+ +DC+
Sbjct: 412 KEGHQMKDCT 421
Score = 37.4 bits (85), Expect = 0.12, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 13/83 (15%)
Query: 108 CHSCGKTGHRAR---DCSTHVQSGGDLRLCNNCYKPGHIAADCTNDKACKNCRKTGHIAR 164
C G GH+AR + + VQ + N P I C NC K GH+A+
Sbjct: 346 CQGVGGPGHKARVLAEAMSQVQQTSIMMQRGNFRGPRRIK--------CFNCGKEGHLAK 397
Query: 165 DCQ--NEPVCNLCNIAGHVARQC 185
+C+ + C C GH + C
Sbjct: 398 NCRAPRKKGCWKCGKEGHQMKDC 420
Score = 35.4 bits (80), Expect = 0.48, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 215 GRYVGYHDVICRSCNQMGHMSRDCVGPLII-CRNCGGRGHMAYEC 258
G + G + C +C + GH++++C P C CG GH +C
Sbjct: 376 GNFRGPRRIKCFNCGKEGHLAKNCRAPRKKGCWKCGKEGHQMKDC 420
>sp|P24107|POL_HV2CA Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype
A (isolate CAM2) GN=gag-pol PE=3 SV=3
Length = 1462
Score = 45.8 bits (107), Expect = 3e-04, Method: Composition-based stats.
Identities = 36/136 (26%), Positives = 52/136 (38%), Gaps = 10/136 (7%)
Query: 22 DRRFRSRHSSYCDPPLRRETRRSFSQGNLCNNCKRPGHFARECPNV----AVCNNCGLPG 77
DR ++S + DP ++ ++ N +CK P + C G PG
Sbjct: 300 DRFYKSLRAEQTDPAVKNWMTQTLLVQNANPDCKLVLKGLGMNPTLEEMLTACQGVGGPG 359
Query: 78 HIASECTTQARCWNCREPGHMASNCHNEGI-CHSCGKTGHRARDCSTHVQSGGDLRLCNN 136
A + P A+ I C +CGK GH AR C + G C
Sbjct: 360 QKARLMAEALKEAMGPPPIPFAAAQQRRTIKCWNCGKEGHSARQCRAPRRQG-----CWK 414
Query: 137 CYKPGHIAADCTNDKA 152
C KPGHI +C + +A
Sbjct: 415 CGKPGHIMTNCPDRQA 430
Score = 34.3 bits (77), Expect = 1.0, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 153 CKNCRKTGHIARDCQ--NEPVCNLCNIAGHVARQCP 186
C NC K GH AR C+ C C GH+ CP
Sbjct: 391 CWNCGKEGHSARQCRAPRRQGCWKCGKPGHIMTNCP 426
Score = 33.9 bits (76), Expect = 1.1, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 225 CRSCNQMGHMSRDCVGPLII-CRNCGGRGHMAYECP 259
C +C + GH +R C P C CG GH+ CP
Sbjct: 391 CWNCGKEGHSARQCRAPRRQGCWKCGKPGHIMTNCP 426
>sp|Q8AII1|POL_SIVTN Gag-Pol polyprotein OS=Simian immunodeficiency virus (isolate TAN1)
GN=gag-pol PE=3 SV=4
Length = 1462
Score = 45.8 bits (107), Expect = 4e-04, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 86 QARCWNCREPGHMASNCH--NEGICHSCGKTGHRARDCSTHVQSGG 129
Q +C+NC + GH A NC + C CG+ GH+ +DC+T S G
Sbjct: 416 QLQCFNCGKVGHTARNCRAPRKKGCWRCGQEGHQMKDCTTRNNSTG 461
Score = 40.0 bits (92), Expect = 0.019, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 11/55 (20%)
Query: 35 PPLRRETRRSFSQGNL-CNNCKRPGHFAREC--PNVAVCNNCGLPGHIASECTTQ 86
PPL++ G L C NC + GH AR C P C CG GH +CTT+
Sbjct: 410 PPLKK--------GQLQCFNCGKVGHTARNCRAPRKKGCWRCGQEGHQMKDCTTR 456
Score = 34.7 bits (78), Expect = 0.65, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 134 CNNCYKPGHIAADC--TNDKACKNCRKTGHIARDC 166
C NC K GH A +C K C C + GH +DC
Sbjct: 419 CFNCGKVGHTARNCRAPRKKGCWRCGQEGHQMKDC 453
Score = 33.9 bits (76), Expect = 1.2, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 225 CRSCNQMGHMSRDCVGPLII-CRNCGGRGHMAYECPS 260
C +C ++GH +R+C P C CG GH +C +
Sbjct: 419 CFNCGKVGHTARNCRAPRKKGCWRCGQEGHQMKDCTT 455
Score = 32.3 bits (72), Expect = 3.3, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 153 CKNCRKTGHIARDCQ--NEPVCNLCNIAGHVARQC 185
C NC K GH AR+C+ + C C GH + C
Sbjct: 419 CFNCGKVGHTARNCRAPRKKGCWRCGQEGHQMKDC 453
>sp|P04584|POL_HV2RO Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype
A (isolate ROD) GN=gag-pol PE=1 SV=3
Length = 1464
Score = 45.4 bits (106), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 70 CNNCGLPGHIASECTTQAR--CWNCREPGHMASNC 102
C NCG GH A +C R CW C +PGH+ +NC
Sbjct: 391 CWNCGKEGHSARQCRAPRRQGCWKCGKPGHIMTNC 425
Score = 45.1 bits (105), Expect = 5e-04, Method: Composition-based stats.
Identities = 38/154 (24%), Positives = 59/154 (38%), Gaps = 12/154 (7%)
Query: 22 DRRFRSRHSSYCDPPLRRETRRSFSQGNLCNNCKRPGHFARECPNV----AVCNNCGLPG 77
DR ++S + DP ++ ++ N +CK P + C G PG
Sbjct: 300 DRFYKSLRAEQTDPAVKNWMTQTLLVQNANPDCKLVLKGLGMNPTLEEMLTACQGVGGPG 359
Query: 78 HIASECTTQARCWNCREPGHMASNCHNEGI-CHSCGKTGHRARDCSTHVQSGGDLRLCNN 136
A + P A+ + C +CGK GH AR C + G C
Sbjct: 360 QKARLMAEALKEVIGPAPIPFAAAQQRKAFKCWNCGKEGHSARQCRAPRRQG-----CWK 414
Query: 137 CYKPGHIAADCTNDKACKNCRKTGHIARDCQNEP 170
C KPGHI +C + +A +TG + ++ P
Sbjct: 415 CGKPGHIMTNCPDRQA--GFLRTGPLGKEAPQLP 446
Score = 33.9 bits (76), Expect = 1.1, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 225 CRSCNQMGHMSRDCVGPLII-CRNCGGRGHMAYECP 259
C +C + GH +R C P C CG GH+ CP
Sbjct: 391 CWNCGKEGHSARQCRAPRRQGCWKCGKPGHIMTNCP 426
>sp|O12158|POL_HV192 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype C (isolate 92BR025) GN=gag-pol PE=1 SV=2
Length = 1431
Score = 45.4 bits (106), Expect = 5e-04, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 34/89 (38%), Gaps = 8/89 (8%)
Query: 67 VAVCNNCGLPGHIASECTTQARCWNCREPGHMASNCHNEG---ICHSCGKTGHRARDCST 123
+ C G PGH A N SNC C +CGK GH AR+C
Sbjct: 345 MTACQGVGGPGHKARVLAEAMSKVNNTNIMMQRSNCKGPKRTIKCFNCGKEGHLARNCRA 404
Query: 124 HVQSGGDLRLCNNCYKPGHIAADCTNDKA 152
+ G C C K GH DCT +A
Sbjct: 405 PRKKG-----CWKCGKEGHQVKDCTERQA 428
Score = 39.7 bits (91), Expect = 0.023, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 12/83 (14%)
Query: 108 CHSCGKTGHRAR---DCSTHVQSGGDLRLCNNCYKPGHIAADCTNDKACKNCRKTGHIAR 164
C G GH+AR + + V + + +NC P C NC K GH+AR
Sbjct: 348 CQGVGGPGHKARVLAEAMSKVNNTNIMMQRSNCKGPKRTIK-------CFNCGKEGHLAR 400
Query: 165 DCQ--NEPVCNLCNIAGHVARQC 185
+C+ + C C GH + C
Sbjct: 401 NCRAPRKKGCWKCGKEGHQVKDC 423
Score = 38.1 bits (87), Expect = 0.075, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 51 CNNCKRPGHFAREC--PNVAVCNNCGLPGHIASECTTQ 86
C NC + GH AR C P C CG GH +CT +
Sbjct: 389 CFNCGKEGHLARNCRAPRKKGCWKCGKEGHQVKDCTER 426
Score = 34.3 bits (77), Expect = 0.89, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 225 CRSCNQMGHMSRDCVGPLII-CRNCGGRGHMAYEC 258
C +C + GH++R+C P C CG GH +C
Sbjct: 389 CFNCGKEGHLARNCRAPRKKGCWKCGKEGHQVKDC 423
>sp|P05961|POL_HV1MN Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate MN) GN=gag-pol PE=1 SV=3
Length = 1441
Score = 45.4 bits (106), Expect = 5e-04, Method: Composition-based stats.
Identities = 33/132 (25%), Positives = 51/132 (38%), Gaps = 33/132 (25%)
Query: 22 DRRFRSRHSSYCDPPLRRETRRSFSQGNLCNNCKR------PGHFARECPNVAVCNNCGL 75
DR +++ + ++ T + N +CK P E + C G
Sbjct: 301 DRFYKTLRAEQASQEVKNRTTETLLVQNANPDCKTILKALGPAATLEEM--MTACQGVGG 358
Query: 76 PGHIA-------SECTTQA----------------RCWNCREPGHMASNCH--NEGICHS 110
PGH A S+ T A +C+NC + GH+A NC + C
Sbjct: 359 PGHKARVLAEAMSQVTNSATIMMQRGNFRNQRKIIKCFNCGKEGHIAKNCRAPRKRGCWK 418
Query: 111 CGKTGHRARDCS 122
CGK GH+ +DC+
Sbjct: 419 CGKEGHQMKDCT 430
Score = 33.5 bits (75), Expect = 1.7, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 17/86 (19%)
Query: 108 CHSCGKTGHRAR---DCSTHVQSGGDLRLCNNCYKPGHIAADCTNDKA---CKNCRKTGH 161
C G GH+AR + + V + + + ++ N + C NC K GH
Sbjct: 353 CQGVGGPGHKARVLAEAMSQVTNSATIMMQRGNFR---------NQRKIIKCFNCGKEGH 403
Query: 162 IARDCQ--NEPVCNLCNIAGHVARQC 185
IA++C+ + C C GH + C
Sbjct: 404 IAKNCRAPRKRGCWKCGKEGHQMKDC 429
>sp|P35963|POL_HV1Y2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate YU-2) GN=gag-pol PE=1 SV=3
Length = 1435
Score = 45.1 bits (105), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 25/81 (30%)
Query: 67 VAVCNNCGLPGHIA-------SECTTQA----------------RCWNCREPGHMASNCH 103
+ C G PGH A S+ T A +C+NC + GH+A NC
Sbjct: 347 MTACQGVGGPGHKARVLAEAMSQVTNSATIMMQRGNFRNQRKTVKCFNCGKEGHIAKNCR 406
Query: 104 --NEGICHSCGKTGHRARDCS 122
+ C CGK GH+ +DC+
Sbjct: 407 APRKKGCWKCGKEGHQMKDCT 427
Score = 34.7 bits (78), Expect = 0.66, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 11/83 (13%)
Query: 108 CHSCGKTGHRAR---DCSTHVQSGGDLRLCNNCYKPGHIAADCTNDKACKNCRKTGHIAR 164
C G GH+AR + + V + + + ++ C N C K GHIA+
Sbjct: 350 CQGVGGPGHKARVLAEAMSQVTNSATIMMQRGNFRNQRKTVKCFN------CGKEGHIAK 403
Query: 165 DCQ--NEPVCNLCNIAGHVARQC 185
+C+ + C C GH + C
Sbjct: 404 NCRAPRKKGCWKCGKEGHQMKDC 426
Score = 32.7 bits (73), Expect = 2.7, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 223 VICRSCNQMGHMSRDCVGPLII-CRNCGGRGHMAYEC 258
V C +C + GH++++C P C CG GH +C
Sbjct: 390 VKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDC 426
>sp|Q73368|POL_HV1B9 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (strain 89.6) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 45.1 bits (105), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 25/81 (30%)
Query: 67 VAVCNNCGLPGHIA-------SECTTQA----------------RCWNCREPGHMASNCH 103
+ C G PGH A S+ T A +C+NC + GH+A NC
Sbjct: 347 MTACQGVGGPGHKARVLAEAMSQVTNSATIMMQRGNFRNQRKTVKCFNCGKEGHIAKNCR 406
Query: 104 --NEGICHSCGKTGHRARDCS 122
+ C CGK GH+ +DC+
Sbjct: 407 APRKKGCWKCGKEGHQMKDCT 427
Score = 34.7 bits (78), Expect = 0.66, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 11/83 (13%)
Query: 108 CHSCGKTGHRAR---DCSTHVQSGGDLRLCNNCYKPGHIAADCTNDKACKNCRKTGHIAR 164
C G GH+AR + + V + + + ++ C N C K GHIA+
Sbjct: 350 CQGVGGPGHKARVLAEAMSQVTNSATIMMQRGNFRNQRKTVKCFN------CGKEGHIAK 403
Query: 165 DCQ--NEPVCNLCNIAGHVARQC 185
+C+ + C C GH + C
Sbjct: 404 NCRAPRKKGCWKCGKEGHQMKDC 426
Score = 32.7 bits (73), Expect = 2.7, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 223 VICRSCNQMGHMSRDCVGPLII-CRNCGGRGHMAYEC 258
V C +C + GH++++C P C CG GH +C
Sbjct: 390 VKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDC 426
>sp|Q9WC63|POL_HV1S9 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype J (isolate SE9173) GN=gag-pol PE=3 SV=3
Length = 1432
Score = 44.7 bits (104), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 24/80 (30%)
Query: 67 VAVCNNCGLPGHIA---SECTTQA-------------------RCWNCREPGHMASNCH- 103
+ C G PGH A +E +Q +C+NC + GH+A NC
Sbjct: 347 MTACQGVGGPGHKARVLAEAMSQVTNTNIMMQRGNFRDHKRIVKCFNCGKQGHIAKNCRA 406
Query: 104 -NEGICHSCGKTGHRARDCS 122
+ C CGK GH+ +DC+
Sbjct: 407 PRKKGCWKCGKEGHQMKDCT 426
Score = 33.9 bits (76), Expect = 1.2, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 6/80 (7%)
Query: 108 CHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADCTNDKACKNCRKTGHIARDCQ 167
C G GH+AR ++ + N + G+ D C NC K GHIA++C+
Sbjct: 350 CQGVGGPGHKAR---VLAEAMSQVTNTNIMMQRGNFR-DHKRIVKCFNCGKQGHIAKNCR 405
Query: 168 --NEPVCNLCNIAGHVARQC 185
+ C C GH + C
Sbjct: 406 APRKKGCWKCGKEGHQMKDC 425
Score = 33.5 bits (75), Expect = 1.7, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 223 VICRSCNQMGHMSRDCVGPLII-CRNCGGRGHMAYEC 258
V C +C + GH++++C P C CG GH +C
Sbjct: 389 VKCFNCGKQGHIAKNCRAPRKKGCWKCGKEGHQMKDC 425
>sp|Q9WC54|POL_HV1S2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype J (isolate SE9280) GN=gag-pol PE=3 SV=3
Length = 1432
Score = 44.7 bits (104), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 24/80 (30%)
Query: 67 VAVCNNCGLPGHIA---SECTTQA-------------------RCWNCREPGHMASNCH- 103
+ C G PGH A +E +Q +C+NC + GH+A NC
Sbjct: 347 MTACQGVGGPGHKARVLAEAMSQVTNTNIMMQRGNFRDHKRIVKCFNCGKQGHIAKNCRA 406
Query: 104 -NEGICHSCGKTGHRARDCS 122
+ C CGK GH+ +DC+
Sbjct: 407 PRKKGCWKCGKEGHQMKDCT 426
Score = 33.9 bits (76), Expect = 1.2, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 6/80 (7%)
Query: 108 CHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADCTNDKACKNCRKTGHIARDCQ 167
C G GH+AR ++ + N + G+ D C NC K GHIA++C+
Sbjct: 350 CQGVGGPGHKAR---VLAEAMSQVTNTNIMMQRGNFR-DHKRIVKCFNCGKQGHIAKNCR 405
Query: 168 --NEPVCNLCNIAGHVARQC 185
+ C C GH + C
Sbjct: 406 APRKKGCWKCGKEGHQMKDC 425
Score = 33.5 bits (75), Expect = 1.7, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 223 VICRSCNQMGHMSRDCVGPLII-CRNCGGRGHMAYEC 258
V C +C + GH++++C P C CG GH +C
Sbjct: 389 VKCFNCGKQGHIAKNCRAPRKKGCWKCGKEGHQMKDC 425
>sp|P12497|POL_HV1N5 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate NY5) GN=gag-pol PE=1 SV=4
Length = 1435
Score = 44.7 bits (104), Expect = 7e-04, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 25/81 (30%)
Query: 67 VAVCNNCGLPGHIA-------SECTTQA----------------RCWNCREPGHMASNCH 103
+ C G PGH A S+ T A +C+NC + GH+A NC
Sbjct: 347 MTACQGVGGPGHKARVLAEAMSQVTNPATIMIQKGNFRNQRKTVKCFNCGKEGHIAKNCR 406
Query: 104 --NEGICHSCGKTGHRARDCS 122
+ C CGK GH+ +DC+
Sbjct: 407 APRKKGCWKCGKEGHQMKDCT 427
Score = 33.9 bits (76), Expect = 1.2, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 11/83 (13%)
Query: 108 CHSCGKTGHRAR---DCSTHVQSGGDLRLCNNCYKPGHIAADCTNDKACKNCRKTGHIAR 164
C G GH+AR + + V + + + ++ C N C K GHIA+
Sbjct: 350 CQGVGGPGHKARVLAEAMSQVTNPATIMIQKGNFRNQRKTVKCFN------CGKEGHIAK 403
Query: 165 DCQ--NEPVCNLCNIAGHVARQC 185
+C+ + C C GH + C
Sbjct: 404 NCRAPRKKGCWKCGKEGHQMKDC 426
Score = 32.7 bits (73), Expect = 2.7, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 223 VICRSCNQMGHMSRDCVGPLII-CRNCGGRGHMAYEC 258
V C +C + GH++++C P C CG GH +C
Sbjct: 390 VKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDC 426
>sp|P40507|AIR1_YEAST Protein AIR1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=AIR1 PE=1 SV=1
Length = 360
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 45/114 (39%), Gaps = 18/114 (15%)
Query: 51 CNNCKRPGHFARECPNVAVCNNCG-LPGHIASECTTQARCWNCREPGHMASNCHNEG--- 106
CNNC + GH R CP+V +C CG + H + C C NC GH S C ++
Sbjct: 76 CNNCSQRGHLKRNCPHV-ICTYCGFMDDHYSQHCPKAIICTNCNANGHYKSQCPHKWKKV 134
Query: 107 ICHSCGKTGH---------RARDCSTHVQSGGDLR----LCNNCYKPGHIAADC 147
C C H R+ T + GD C NC GH DC
Sbjct: 135 FCTLCNSKRHSRERCPSIWRSYLLKTKDANQGDFDFQTVFCYNCGNAGHFGDDC 188
Score = 32.7 bits (73), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 31/92 (33%), Gaps = 37/92 (40%)
Query: 169 EPVCNLCNIAGHVARQCPKGDSLGERGGGGGGERGGGGGGDGGGGGGRYVGYHDVICRSC 228
EP CN C+ GH+ R CP VIC C
Sbjct: 73 EPKCNNCSQRGHLKRNCPH-----------------------------------VICTYC 97
Query: 229 NQMG-HMSRDCVGPLIICRNCGGRGHMAYECP 259
M H S+ C IIC NC GH +CP
Sbjct: 98 GFMDDHYSQHCPK-AIICTNCNANGHYKSQCP 128
Score = 32.3 bits (72), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 50/157 (31%), Gaps = 43/157 (27%)
Query: 86 QARCWNCREPGHMASNCHNEGICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAA 145
+ +C NC + GH+ NC + IC CG + H +
Sbjct: 73 EPKCNNCSQRGHLKRNCPH-VICTYCG-------------------------FMDDHYSQ 106
Query: 146 DCTNDKACKNCRKTGHIARDC---QNEPVCNLCNIAGHVARQCPKGDSLGERGGGGGGER 202
C C NC GH C + C LCN H +CP S+ R +
Sbjct: 107 HCPKAIICTNCNANGHYKSQCPHKWKKVFCTLCNSKRHSRERCP---SIW-RSYLLKTKD 162
Query: 203 GGGGGGDGGGGGGRYVGYHDVICRSCNQMGHMSRDCV 239
G D + V C +C GH DC
Sbjct: 163 ANQGDFD----------FQTVFCYNCGNAGHFGDDCA 189
Score = 31.2 bits (69), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 37/111 (33%), Gaps = 38/111 (34%)
Query: 153 CKNCRKTGHIARDCQNEPVCNLCNIAG-HVARQCPKGDSLGERGGGGGGERGGGGGGDGG 211
C NC + GH+ R+C + +C C H ++ CPK
Sbjct: 76 CNNCSQRGHLKRNCPH-VICTYCGFMDDHYSQHCPKA----------------------- 111
Query: 212 GGGGRYVGYHDVICRSCNQMGHMSRDCVGPL--IICRNCGGRGHMAYECPS 260
+IC +CN GH C + C C + H CPS
Sbjct: 112 -----------IICTNCNANGHYKSQCPHKWKKVFCTLCNSKRHSRERCPS 151
>sp|P33458|GAG_CAEVC Gag polyprotein OS=Caprine arthritis encephalitis virus (strain
Cork) GN=gag PE=3 SV=1
Length = 441
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 23/34 (67%)
Query: 88 RCWNCREPGHMASNCHNEGICHSCGKTGHRARDC 121
RC+NC +PGH A C ICH+CGK GH ++C
Sbjct: 380 RCYNCGKPGHQARQCRQGIICHNCGKRGHMQKEC 413
Score = 38.9 bits (89), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 22/33 (66%)
Query: 51 CNNCKRPGHFARECPNVAVCNNCGLPGHIASEC 83
C NC +PGH AR+C +C+NCG GH+ EC
Sbjct: 381 CYNCGKPGHQARQCRQGIICHNCGKRGHMQKEC 413
Score = 35.0 bits (79), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Query: 108 CHSCGKTGHRARDCSTHVQSG-----GDLRLCNNCYKPGHIAADCTNDKACKNCRKTGHI 162
C G G + + + ++ G G + C NC KPGH A C C NC K GH+
Sbjct: 350 CRDVGSEGFKMQLLAQALRPGKGKGNGQPQRCYNCGKPGHQARQCRQGIICHNCGKRGHM 409
Query: 163 ARDC 166
++C
Sbjct: 410 QKEC 413
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 225 CRSCNQMGHMSRDCVGPLIICRNCGGRGHMAYEC 258
C +C + GH +R C IIC NCG RGHM EC
Sbjct: 381 CYNCGKPGHQARQCRQG-IICHNCGKRGHMQKEC 413
Score = 31.2 bits (69), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 18/33 (54%)
Query: 70 CNNCGLPGHIASECTTQARCWNCREPGHMASNC 102
C NCG PGH A +C C NC + GHM C
Sbjct: 381 CYNCGKPGHQARQCRQGIICHNCGKRGHMQKEC 413
>sp|Q9NUD5|ZCHC3_HUMAN Zinc finger CCHC domain-containing protein 3 OS=Homo sapiens
GN=ZCCHC3 PE=1 SV=1
Length = 404
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 129 GDLRLCNNCYKPGHIAADCTNDKACKNCRKTGHIARDCQNEPVCNLCNIAGHVARQCPKG 188
G + C C H++ CT D+ C C + GH++ C+ VCNLC GH QCPK
Sbjct: 331 GQPKTCFKCGSRTHMSGSCTQDR-CFRCGEEGHLSPYCRKGIVCNLCGKRGHAFAQCPKA 389
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 69 VCNNCGLPGHIASECTTQARCWNCREPGHMASNCHNEGICHSCGKTGHRARDCSTHV 125
C CG H++ CT Q RC+ C E GH++ C +C+ CGK GH C V
Sbjct: 335 TCFKCGSRTHMSGSCT-QDRCFRCGEEGHLSPYCRKGIVCNLCGKRGHAFAQCPKAV 390
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.139 0.481
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 117,963,479
Number of Sequences: 539616
Number of extensions: 5876664
Number of successful extensions: 117704
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1377
Number of HSP's successfully gapped in prelim test: 611
Number of HSP's that attempted gapping in prelim test: 54717
Number of HSP's gapped (non-prelim): 34032
length of query: 271
length of database: 191,569,459
effective HSP length: 116
effective length of query: 155
effective length of database: 128,974,003
effective search space: 19990970465
effective search space used: 19990970465
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)