Query 024172
Match_columns 271
No_of_seqs 135 out of 240
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 03:37:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024172.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024172hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wa7_B TIP, hypothetical 28.7 32.8 38 0.0013 20.2 2.7 20 10-29 2-21 (26)
2 1wlp_A Cytochrome B-245 light 12.9 1.4E+02 0.0046 17.9 2.2 14 11-24 3-16 (26)
3 2veb_A Protoglobin; hemoprotei 10.7 5.9E+02 0.02 21.7 6.6 61 73-150 105-168 (195)
4 1jb0_J Photosystem 1 reaction 8.9 80 0.0027 20.9 0.2 26 123-149 12-37 (41)
5 3u5c_V S26, YS25, 40S ribosoma 7.5 1.1E+02 0.0037 23.4 0.5 6 118-123 9-14 (87)
6 2xzm_Z RPS21E; ribosome, trans 7.4 1.1E+02 0.0038 23.8 0.5 6 118-123 24-29 (97)
7 3ubc_A Hemoglobin-like flavopr 7.1 5.3E+02 0.018 19.1 4.4 36 128-165 94-129 (131)
8 1jeb_A Hemoglobin zeta chain; 6.8 6.7E+02 0.023 18.9 4.9 36 128-165 102-137 (142)
9 3o71_B Peptide of deleted in c 6.5 2.1E+02 0.007 17.2 1.2 10 113-122 7-16 (27)
10 1out_A Hemoglobin I; heme, oxy 6.4 7.2E+02 0.025 19.0 4.9 37 127-165 102-138 (143)
No 1
>1wa7_B TIP, hypothetical 28.7 kDa protein in DHFR 3'region (ORF1); SH3 domain, ligand, tyrosine kinase, signal transduction, LYN; NMR {Saimiriine herpesvirus 2}
Probab=32.75 E-value=38 Score=20.21 Aligned_cols=20 Identities=35% Similarity=0.775 Sum_probs=14.5
Q ss_pred CCCCCCCCCCCCCCCCCCcc
Q 024172 10 GPGMPRPAADAQPNPFGNAF 29 (271)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~ 29 (271)
+||++.|+-+|-|.+-|.-.
T Consensus 2 ~PG~P~P~LPpRPaNLG~~q 21 (26)
T 1wa7_B 2 DPGMPTPPLPPRPANLGERQ 21 (26)
T ss_dssp CCCCCCCCCCCCTTSTTTSC
T ss_pred CCCCCCCCCCCCcccccccc
Confidence 48888888777777666543
No 2
>1wlp_A Cytochrome B-245 light chain; SH3 domain, polyproline, oxidoreductase/signaling protein complex; NMR {Homo sapiens}
Probab=12.92 E-value=1.4e+02 Score=17.94 Aligned_cols=14 Identities=29% Similarity=0.729 Sum_probs=9.6
Q ss_pred CCCCCCCCCCCCCC
Q 024172 11 PGMPRPAADAQPNP 24 (271)
Q Consensus 11 ~~~~~~~~~~~~~~ 24 (271)
-|--++|++|+|.|
T Consensus 3 ~~ikqpP~nPPPRp 16 (26)
T 1wlp_A 3 LGSKQPPSNPPPRP 16 (26)
T ss_dssp CSSCCCCSSCCCCC
T ss_pred ccccCCCCCcCCCC
Confidence 35667788888744
No 3
>2veb_A Protoglobin; hemoprotein structure, protein matrix tunnels, methanogenesis, archaea protein, transport protein; HET: HEM; 1.30A {Methanosarcina acetivorans} PDB: 2vee_A* 3r0g_A* 3qzz_A* 3qzx_A*
Probab=10.73 E-value=5.9e+02 Score=21.72 Aligned_cols=61 Identities=11% Similarity=0.094 Sum_probs=32.6
Q ss_pred eChHHHHHhhceeeccccccCCceeeecCCCCccCCCCCccCCCCCCcccch---hHHHHHHHHHHHHhhhcCCCChhhH
Q 024172 73 VNDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDLYIPF---MAFGTYVVLAGFTLGLQGKFTPEAL 149 (271)
Q Consensus 73 VdnsYV~~KL~lllFPf~hk~~W~R~~e~~~g~~~~~pPr~DinAPDLYIPl---MafvTYILL~g~~~G~~g~FsPE~L 149 (271)
-|+.|+.+++++-+-=.+-|+ .+.+| --|-+|||. .+++.-|.....-...++.-+||..
T Consensus 105 YD~~Yl~~r~rIGlvHvRI~k------~~~dG-----------V~~~~~i~~ry~ia~i~~i~~~i~~~l~~~~~~~~~~ 167 (195)
T 2veb_A 105 YDQAWLDYQYEIGLRHHRTKK------NQTDN-----------VESVPNIGYRYLVAFIYPITATMKPFLARKGHTPEEV 167 (195)
T ss_dssp CSHHHHHHHHHHHHHHSTTTT------TTTTT-----------CCCCSCCCHHHHHHTHHHHHHTTHHHHTSSSCCHHHH
T ss_pred chHHHHHHHHHHHHHHHHhcc------cccCC-----------CCcccCCchHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 488888887777654332221 11222 246678777 4444444333333344456778874
Q ss_pred H
Q 024172 150 N 150 (271)
Q Consensus 150 g 150 (271)
.
T Consensus 168 ~ 168 (195)
T 2veb_A 168 E 168 (195)
T ss_dssp H
T ss_pred H
Confidence 3
No 4
>1jb0_J Photosystem 1 reaction centre subunit IX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.18.1 PDB: 3pcq_J*
Probab=8.85 E-value=80 Score=20.91 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=18.8
Q ss_pred chhHHHHHHHHHHHHhhhcCCCChhhH
Q 024172 123 PFMAFGTYVVLAGFTLGLQGKFTPEAL 149 (271)
Q Consensus 123 PlMafvTYILL~g~~~G~~g~FsPE~L 149 (271)
|+++.+-..+++|+...++. |-|+.|
T Consensus 12 PVla~~w~~~tAg~lIEiNR-ffPD~L 37 (41)
T 1jb0_J 12 PVLAAIWMTITAGILIEFNR-FYPDLL 37 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HSCCCS
T ss_pred hHHHHHHHHHHHHHHHHHHH-hCcccc
Confidence 77888888888887776653 666654
No 5
>3u5c_V S26, YS25, 40S ribosomal protein S21-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_T 3u5g_V
Probab=7.53 E-value=1.1e+02 Score=23.38 Aligned_cols=6 Identities=50% Similarity=1.298 Sum_probs=3.7
Q ss_pred CCcccc
Q 024172 118 PDLYIP 123 (271)
Q Consensus 118 PDLYIP 123 (271)
=|||||
T Consensus 9 VDLYiP 14 (87)
T 3u5c_V 9 VELYVP 14 (87)
T ss_dssp CSSCCC
T ss_pred EEEEcc
Confidence 366666
No 6
>2xzm_Z RPS21E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_Z
Probab=7.35 E-value=1.1e+02 Score=23.75 Aligned_cols=6 Identities=50% Similarity=1.060 Sum_probs=5.0
Q ss_pred CCcccc
Q 024172 118 PDLYIP 123 (271)
Q Consensus 118 PDLYIP 123 (271)
=|||||
T Consensus 24 VDLYiP 29 (97)
T 2xzm_Z 24 IDAYLP 29 (97)
T ss_dssp CSSSCC
T ss_pred EeEecc
Confidence 589998
No 7
>3ubc_A Hemoglobin-like flavoprotein; oxygen-bound, autoxidation, nanotemplate, langmuir-blodgett, films, oxygen transport; HET: HEM; 1.65A {Methylacidiphilum infernorum V4} PDB: 3ubv_A* 3s1i_A* 3s1j_A*
Probab=7.09 E-value=5.3e+02 Score=19.13 Aligned_cols=36 Identities=25% Similarity=0.151 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHHHH
Q 024172 128 GTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGWFMQFM 165 (271)
Q Consensus 128 vTYILL~g~~~G~~g~FsPE~Lg~~~s~~l~~~~lEv~ 165 (271)
+.=.|+..+...+...||||.- .+..-+...+.+++
T Consensus 94 ~~~~Ll~~l~~~lg~~~t~e~~--~AW~~~~~~va~~~ 129 (131)
T 3ubc_A 94 VGDCLLKSIQEYLGQGFTEEAK--AAWTKVYGIAAQVM 129 (131)
T ss_dssp HHHHHHHHHHHHHGGGSCHHHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccCCHHHH--HHHHHHHHHHHHHH
Confidence 4456666777666678999973 44444444444443
No 8
>1jeb_A Hemoglobin zeta chain; oxygen transport, oxygen storage/transport complex; HET: HEM; 2.10A {Homo sapiens} SCOP: a.1.1.2
Probab=6.81 E-value=6.7e+02 Score=18.93 Aligned_cols=36 Identities=14% Similarity=0.136 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHHHH
Q 024172 128 GTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGWFMQFM 165 (271)
Q Consensus 128 vTYILL~g~~~G~~g~FsPE~Lg~~~s~~l~~~~lEv~ 165 (271)
+.=+|+..+...+...||||.- .+...+...+.+++
T Consensus 102 ~~~~ll~~l~~~lg~~~t~e~~--~AW~~~~~~v~~~l 137 (142)
T 1jeb_A 102 LSHCLLVTLAARFPADFTAEAH--AAWDKFLSVVSSVL 137 (142)
T ss_dssp HHHHHHHHHHHHCTTTCCHHHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccccCCHHHH--HHHHHHHHHHHHHH
Confidence 4456677777777778999973 45444444444444
No 9
>3o71_B Peptide of deleted in colorectal cancer; protein-peptide complex, kinase, DCC, transferase-protein BI complex; 1.95A {Rattus norvegicus}
Probab=6.46 E-value=2.1e+02 Score=17.21 Aligned_cols=10 Identities=50% Similarity=1.012 Sum_probs=7.9
Q ss_pred cCCCCCCccc
Q 024172 113 YDINAPDLYI 122 (271)
Q Consensus 113 ~DinAPDLYI 122 (271)
-|+.-|||.|
T Consensus 7 kDlkppdlwi 16 (27)
T 3o71_B 7 KDLRPPDLWI 16 (27)
T ss_pred CCCCCcceee
Confidence 4778889987
No 10
>1out_A Hemoglobin I; heme, oxygen transport, respiratory protein, erythrocyte; HET: HEM; 2.30A {Oncorhynchus mykiss} SCOP: a.1.1.2 PDB: 1ouu_A*
Probab=6.38 E-value=7.2e+02 Score=19.01 Aligned_cols=37 Identities=14% Similarity=0.257 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHHHH
Q 024172 127 FGTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGWFMQFM 165 (271)
Q Consensus 127 fvTYILL~g~~~G~~g~FsPE~Lg~~~s~~l~~~~lEv~ 165 (271)
.+.=+|+..+...+...||||+- .+...+...+.+++
T Consensus 102 ~~~~~Ll~~l~~~lg~~~t~e~~--~AW~k~~~~va~~l 138 (143)
T 1out_A 102 ILSHNILVTLAIHFPSDFTPEVH--IAVDKFLAAVSAAL 138 (143)
T ss_dssp HHHHHHHHHHHHHCTTTCCHHHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccccCCHHHH--HHHHHHHHHHHHHH
Confidence 35566777777777788999974 34444444444443
Done!